Citrus Sinensis ID: 007082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
Protein Sequence
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLSLARPDDSSTQDAMGLR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHccccEEEEcccccccHHHHHHHHccccccEEEcccccccccHHHHHccccccccEEEcccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEccccccccccccccccEEEccccccccccccccccccccEEEccccccccHHHHHHHHccccccEEEcccccccccccccccccccEEEccccccccccHHHHHHccccccEEEccccccccccHHHHHcccccccEEEccccccccccHHHHHccccccEEEccccccccccccccccHHHHHcHHHccccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHcHHcccEEEccccccccHHHHHHHHcHHHccEEEcccccccHHHHHHHHHHHcccEEccccccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHcccEEEccccccccccccHHHcHccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccHHHHHHHHHHHHHccEEccccccccHHHHHHHHHHHHHccEEccccccccHHHHHHHHHHHHHccEEEcccccccHHHHHHHHHcHcccEEEcccccccccEcccccccccHHHHHHHHcHHHccEEEcccccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHcHHcccEEEccccccccHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHEccccccccHHHHHHccccHHHHHHHHHccccccccccccHHHccccc
Coil and Loop (DISEMBL)
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIElrgensvdAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTgmtclkeldlsrcvkVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLqnlsvldlgglpvtDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKmfprlsflnlawtgvtklpnissleclnlsnctidsilegnenkaplakISLAGTTFINEREAFLYIETSLLSFldvsnsslsrFCFLTQMKALEhldlsssmigddSVEMVACVGANlrnlnlsntrfssagvgilaghlpnleilslsgtqiDDYAISYMsmmpslkfidisnTDIKGFIQQVGAETDLVLSLTALQNLNHLERLnleqtqvsdatlfplstFKELIHLSLrnasltdvslhqlsslskltnlsirdavltnsglgsfkpprslklldlhggwllTEDAILQFCKMHPRIEVWHELSvicpsdqigsngpspsrtSLRASLVkqkqdpmpmshsflGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSlslarpddsstqdamglr
Flexible Loop (DISEMBL)
MERERESELVRLCIEaacqsgesvqkWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIelrgensvdAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTnsglgsfkppRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVkqkqdpmpmSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQysslslarpddsstqdamglr
Low Complexity Region (SEG)
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSllrhlirrrliFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSlklldlhggwllTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSReellelqysslslARPDDSSTQDAMGLR
Disordered region (IsUnstruct)
********LVRLCIEAACQSG**VQKW******LERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP********************************SFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLE***********************
Disordered Region (DISOPRED)
*****ES**VRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ***********************************LLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLE******************AMGL*
Disordered Region (DISEMBL)
*********VRLCIEAACQ***********RRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ***********************PMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLSL***************
Disordered Region (DISPRO)
*****ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVIC******************ASL********PMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSS******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLSLARPDDSSTQDAMGLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	619	2.2.26 [Sep-21-2011]
Q8YA32	1778	Internalin-I OS=Listeria	yes	no	0.537	0.187	0.263	2e-09
Q723X5	1775	Internalin-I OS=Listeria	yes	no	0.544	0.189	0.265	2e-08
Q8N1E6	418	F-box/LRR-repeat protein	yes	no	0.462	0.684	0.253	5e-07
Q8BID8	400	F-box/LRR-repeat protein	yes	no	0.462	0.715	0.253	6e-07
Q17R01	400	F-box/LRR-repeat protein	yes	no	0.462	0.715	0.253	6e-07
Q8CDU4	790	F-box/LRR-repeat protein	no	no	0.384	0.301	0.241	2e-06
P0DJM0	800	Internalin-A OS=Listeria	no	no	0.434	0.336	0.283	2e-05
Q723K6	800	Internalin-A OS=Listeria	no	no	0.420	0.325	0.275	2e-05
G2K3G6	800	Internalin-A OS=Listeria	no	no	0.420	0.325	0.275	3e-05
P34284	466	Uncharacterized F-box/LRR	yes	no	0.516	0.686	0.245	0.0001

>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlI PE=4 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 176/403 (43%), Gaps = 70/403 (17%)

Query: 81  EWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS 140
           E +  L     L++L ++D   +T+  + A+T +  LK L L  C  +T  G   L ++ 
Sbjct: 380 EDLGTLNNLPKLQTLVLSDNENLTN--ITAITDLPQLKTLTLDGC-GITSIGT--LDNLP 434

Query: 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
            LEKL L E  +T             S+ ++  LP             +L YLD+  + +
Sbjct: 435 KLEKLDLKENQIT-------------SISEITDLP-------------RLSYLDVSVNNL 468

Query: 201 SNRGAAVLKMFPRLSFLNLA---WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           +  G   LK  P L +LN++    + V+ L N  SL  +N+SN  I ++  G   + P  
Sbjct: 469 TTIGD--LKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINISNNVIRTV--GKMTELPSL 524

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
           K   A    I++    +  +   L  +D SN+ ++       +  L+ LD+ S+ I   S
Sbjct: 525 KEFYAQNNSISDIS--MIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHSNRITSTS 582

Query: 318 V--------------EMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
           V               ++  +G   NL +L   N  F+        G LPNLE L +S  
Sbjct: 583 VIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSLAPIGDLPNLETLIVSDN 642

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421
                ++  M  +P L+ +D+ N     ++   G E +    L++L +L +L  LNL   
Sbjct: 643 NSYLRSLGTMDGVPKLRILDLQN----NYLNYTGTEGN----LSSLSDLTNLTELNLRNN 694

Query: 422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464
              D  +  LST   LI+L+L +  + D+     S+LS LTNL
Sbjct: 695 VYID-DISGLSTLSRLIYLNLDSNKIEDI-----SALSNLTNL 731

Unknown. A role in virulence could not be demonstrated.
Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q723X5|INLI_LISMF Internalin-I OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlI PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 186/415 (44%), Gaps = 78/415 (18%)

Query: 81  EWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS 140
           E +  L     L++L ++D + +T+  + A+T M  LK L L  C  +T  G   L ++ 
Sbjct: 377 EDLGTLNNLPKLQTLILSDNKDLTN--INAITDMPQLKTLALDGC-GITSIGT--LDNLP 431

Query: 141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
            LEKL L E  LT             S+ ++  LP             +L YLD+  + +
Sbjct: 432 KLEKLDLKENQLT-------------SISEINDLP-------------RLSYLDVSVNYL 465

Query: 201 SNRGAAVLKMFPRLSFLNLA---WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           +  G   LK  P L +LN++    + V+ L N  SL  +N+SN  I ++  G   + P  
Sbjct: 466 TTIGE--LKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINVSNNVIRTV--GKMTELPSL 521

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
           K   A     N  +  +  +   L  +D SN+ ++       +  L++LD+ S+ I + S
Sbjct: 522 KEFYAQNN--NVSDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQNLDVHSNRITNTS 579

Query: 318 V--------------EMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
           V               ++  +G   NL  L   +  F+        G LP LEIL ++  
Sbjct: 580 VIHDLPSLETFYAQNNLITNIGTMDNLPELTYVDLSFNRIPSLAPIGDLPKLEILKVT-- 637

Query: 362 QIDDYA----ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN 417
             D+Y+    +  M  +  L+ +++ N     ++   G E +L    +AL +L +L  LN
Sbjct: 638 --DNYSYLRSLGTMDGVSKLRNLELQN----NYLNYTGTEGNL----SALSDLTNLTELN 687

Query: 418 L-EQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLT--NLSIRD 468
           L +   +SD  +  LST   LI+L+L +  + D+S L  L++L +LT  N  I D
Sbjct: 688 LRDNGYISD--ISGLSTLSRLIYLNLDSNKIKDISALSNLTTLQELTLENNQIED 740

Unknown. A role in virulence could not be demonstrated.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 45/331 (13%)

Query: 66  NAEAIELRG-----ENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKE 119
           N E++ L G     +N +   ++  +G+   LR+LN++ C+++T S+L  +   +  L+ 
Sbjct: 91  NIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLCKQITDSSLGRIAQYLKGLEV 147

Query: 120 LDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVT 177
           L+L  C  +T+ G+  +   +  L+ L L      +D GI  L+ +   +    G L + 
Sbjct: 148 LELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA--EGCLGLE 205

Query: 178 DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL-NLAWTGVTKLPNISSLECL 236
            L L+  Q LT L    +      +RG   L++   LSF   ++  G+  L ++ SL  L
Sbjct: 206 QLTLQDCQKLTDLSLKHI------SRGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSL 258

Query: 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD-VSNSSLSRFC 295
           NL +C  D+I +       +  + L+G                 +SF D V + SL+   
Sbjct: 259 NLRSC--DNISDTGIMHLAMGSLRLSGLD---------------VSFCDKVGDQSLA--- 298

Query: 296 FLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNL 353
           ++ Q +  L+ L L S  I DD +  +      LR LN+    R +  G+ ++A HL  L
Sbjct: 299 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 358

Query: 354 EILSLSG-TQIDDYAISYMSMMPSLKFIDIS 383
             + L G T+I    +  ++ +P LK +++ 
Sbjct: 359 TGIDLYGCTRITKRGLERITQLPCLKVLNLG 389

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Homo sapiens (taxid: 9606)

>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 45/331 (13%)

Query: 66  NAEAIELRG-----ENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKE 119
           N E++ L G     +N +   ++  +G+   LR+LN++ C+++T S+L  +   +  L+ 
Sbjct: 91  NIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLCKQITDSSLGRIAQYLKGLEV 147

Query: 120 LDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVT 177
           L+L  C  +T+ G+  +   +  L+ L L      +D GI  L+ +   +    G L + 
Sbjct: 148 LELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA--EGCLGLE 205

Query: 178 DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL-NLAWTGVTKLPNISSLECL 236
            L L+  Q LT L    +      +RG   L++   LSF   ++  G+  L ++ SL  L
Sbjct: 206 QLTLQDCQKLTDLSLKHI------SRGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSL 258

Query: 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD-VSNSSLSRFC 295
           NL +C  D+I +       +  + L+G                 +SF D V + SL+   
Sbjct: 259 NLRSC--DNISDTGIMHLAMGSLRLSGLD---------------VSFCDKVGDQSLA--- 298

Query: 296 FLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNL 353
           ++ Q +  L+ L L S  I DD +  +      LR LN+    R +  G+ ++A HL  L
Sbjct: 299 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 358

Query: 354 EILSLSG-TQIDDYAISYMSMMPSLKFIDIS 383
             + L G T+I    +  ++ +P LK +++ 
Sbjct: 359 TGIDLYGCTRITKRGLERITQLPCLKVLNLG 389

Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Mus musculus (taxid: 10090)

>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 45/331 (13%)

Query: 66  NAEAIELRG-----ENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKE 119
           N E++ L G     +N +   ++  +G+   LR+LN++ C+++T S+L  +   +  L+ 
Sbjct: 91  NIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLCKQITDSSLGRIAQYLKGLEV 147

Query: 120 LDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVT 177
           L+L  C  +T+ G+  +   +  L+ L L      +D GI  L+ +   +    G L + 
Sbjct: 148 LELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAA--EGCLGLE 205

Query: 178 DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFL-NLAWTGVTKLPNISSLECL 236
            L L+  Q LT L    +      +RG   L++   LSF   ++  G+  L ++ SL  L
Sbjct: 206 QLTLQDCQKLTDLSLKHI------SRGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSL 258

Query: 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD-VSNSSLSRFC 295
           NL +C  D+I +       +  + L+G                 +SF D V + SL+   
Sbjct: 259 NLRSC--DNISDTGIMHLAMGSLRLSGLD---------------VSFCDKVGDQSLA--- 298

Query: 296 FLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNL 353
           ++ Q +  L+ L L S  I DD +  +      LR LN+    R +  G+ ++A HL  L
Sbjct: 299 YIAQGLDGLKSLSLCSCHISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIAEHLSQL 358

Query: 354 EILSLSG-TQIDDYAISYMSMMPSLKFIDIS 383
             + L G T+I    +  ++ +P LK +++ 
Sbjct: 359 TGIDLYGCTRITKRGLERITQLPCLKVLNLG 389

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Bos taurus (taxid: 9913)

>sp|Q8CDU4|FXL13_MOUSE F-box/LRR-repeat protein 13 OS=Mus musculus GN=Fbxl13 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 129/311 (41%), Gaps = 73/311 (23%)

Query: 68  EAIELRGENSV-DAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV 126
           + I   G   + DA + +    +  +  + + DC+ +T S+L +L+ +  L  L+L+ C+
Sbjct: 454 KKIRFEGNKRISDACFKSIDRNYPGINHIYMVDCKGLTDSSLKSLSLLKQLTVLNLTNCI 513

Query: 127 KVTDAGMKHLLSIST---LEKLWLSETGLTADG--IALLSSLQNLSVLDLGGLP-VTDLV 180
           ++ D G+KH         L +L L+   L  D   I L     NL  L+L     +TDL 
Sbjct: 514 RIGDIGLKHFFDGPASIRLRELNLTNCSLLGDSSVIRLSERCPNLHYLNLRNCEHLTDLA 573

Query: 181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSN 240
           +  +  +  L  +DL G+ +SN G  +L                 KL  +S  +C+N+++
Sbjct: 574 IEYIASMLSLISVDLSGTLISNEGMTILSRH-------------RKLREVSVSDCVNITD 620

Query: 241 CTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300
             I +                             Y +TSLL                   
Sbjct: 621 FGIRA-----------------------------YCKTSLL------------------- 632

Query: 301 KALEHLDLS-SSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSL 358
             LEHLD+S  S + DD ++ +A     + +LN++   + + AG+ IL+     L IL +
Sbjct: 633 --LEHLDVSYCSQLTDDIIKTIAIFCTRITSLNIAGCPKITDAGMEILSARCHYLHILDI 690

Query: 359 SGT-QIDDYAI 368
           SG  Q+ D  I
Sbjct: 691 SGCIQLTDQII 701

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Mus musculus (taxid: 10090)

>sp|P0DJM0|INLA_LISMO Internalin-A OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=inlA PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)

Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 61  LGKTNVTDTVSQTDLDQVTTLQ-ADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 118

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 119 LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 171

Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D  + ++A + 
Sbjct: 172 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKL- 228

Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 229 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 282

Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
             I       G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K 
Sbjct: 283 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 340

Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
           L +L+L   +++D+S   +SSL+KL
Sbjct: 341 LTYLTLYFNNISDIS--PVSSLTKL 363

Mediates the entry of L.monocytogenes into cells.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|Q723K6|INLA_LISMF Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 149/312 (47%), Gaps = 52/312 (16%)

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLN 218
           L  L NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     L+  N
Sbjct: 94  LEYLNNLTQINFSNNQLTDIT--PLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFN 151

Query: 219 LAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
              T +  L N+++L  L LS+ TI  I             +L+G T + +         
Sbjct: 152 NQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ--------- 190

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
             LSF     + ++    L  +  LE LD+SS+ + D  + ++A +  NL +L  +N + 
Sbjct: 191 --LSF----GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKL-TNLESLIATNNQI 241

Query: 339 SS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 397
           S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I       G  
Sbjct: 242 SDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLT 295

Query: 398 --TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449
             T+L L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L   +++D
Sbjct: 296 KLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 353

Query: 450 VSLHQLSSLSKL 461
           +S   +SSL+KL
Sbjct: 354 IS--PVSSLTKL 363

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|G2K3G6|INLA_LISM4 Internalin-A OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=inlA PE=3 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 149/312 (47%), Gaps = 52/312 (16%)

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLN 218
           L  L NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     L+  N
Sbjct: 94  LEYLNNLTQINFSNNQLTDIT--PLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 151

Query: 219 LAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
              T +  L N+++L  L LS+ TI  I             +L+G T + +         
Sbjct: 152 NQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTNLQQ--------- 190

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
             LSF     + ++    L  +  LE LD+SS+ + D  + ++A +  NL +L  +N + 
Sbjct: 191 --LSF----GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKL-TNLESLIATNNQI 241

Query: 339 SS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 397
           S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I       G  
Sbjct: 242 SDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLT 295

Query: 398 --TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449
             T+L L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L   +++D
Sbjct: 296 KLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 353

Query: 450 VSLHQLSSLSKL 461
           +S   +SSL+KL
Sbjct: 354 IS--PVSSLTKL 363

Mediates the entry of Listeria monocytogenes into cells.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 174/427 (40%), Gaps = 107/427 (25%)

Query: 117 LKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP 175
           LKEL L  C  V D+ ++   S    LE L L       D     +S +NL         
Sbjct: 125 LKELSLKGCENVHDSALRTFTSRCPNLEHLSLYRCKRVTD-----ASCENLG-------- 171

Query: 176 VTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVL-KMFPRLSFLNLAWTGVTKLPNISSL 233
                    +   KL YL+L   S +++R    +    P LS+LN++W    +   +  +
Sbjct: 172 ---------RYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQII 222

Query: 234 ECLNLSNC-TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292
               LSNC ++D+++             L G   + E   F  +E               
Sbjct: 223 ----LSNCKSLDTLI-------------LRGCEGLTE-NVFGSVEA-------------- 250

Query: 293 RFCFLTQMKALEHLDL-SSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHL 350
                  M A++ L+L     + D +V+ +A     L  L +SN  + S   +  L  H 
Sbjct: 251 ------HMGAIKKLNLLQCFQLTDITVQNIANGATALEYLCMSNCNQISDRSLVSLGQHS 304

Query: 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410
            NL++L LSG           +++    FI ++    +G  Q                  
Sbjct: 305 HNLKVLELSGC----------TLLGDNGFIPLA----RGCRQ------------------ 332

Query: 411 NHLERLNLEQTQ-VSDATLFPLST-FKELIHLSLRNASL-TDVSLHQLSSLSKLT-NLSI 466
             LERL++E    +SD T+  L+     L  LSL +  L TD S+  L+S  + T N+  
Sbjct: 333 --LERLDMEDCSLISDHTINSLANNCTALRELSLSHCELITDESIQNLASKHRETLNVLE 390

Query: 467 RDAV--LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELS-VICPS 523
            D    LT+S L   +  ++LK +DL+    ++++AI++F    P IE+    + V  P+
Sbjct: 391 LDNCPQLTDSTLSHLRHCKALKRIDLYDCQNVSKEAIVRFQHHRPNIEIHAYFAPVTPPT 450

Query: 524 DQIGSNG 530
           DQ+ + G
Sbjct: 451 DQVVNRG 457

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	619
356513289	589	PREDICTED: uncharacterized protein LOC10	0.933	0.981	0.622	0.0
225426352	598	PREDICTED: uncharacterized protein LOC10	0.940	0.973	0.615	0.0
297742329	588	unnamed protein product [Vitis vinifera]	0.924	0.972	0.615	0.0
255537779	597	protein binding protein, putative [Ricin	0.930	0.964	0.643	0.0
449464060	586	PREDICTED: uncharacterized protein LOC10	0.930	0.982	0.558	1e-179
297803756	590	hypothetical protein ARALYDRAFT_492485 [	0.917	0.962	0.518	1e-152
186701224	600	leucine-rich repeat family protein [Arab	0.938	0.968	0.527	1e-152
42567079	597	leucine-rich repeat-containing protein [	0.933	0.968	0.508	1e-143
326513166	627	predicted protein [Hordeum vulgare subsp	0.915	0.904	0.5	1e-143
218196286	601	hypothetical protein OsI_18882 [Oryza sa	0.925	0.953	0.495	1e-142

>gi|356513289|ref|XP_003525346.1| PREDICTED: uncharacterized protein LOC100814174 [Glycine max]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/607 (62%), Positives = 474/607 (78%), Gaps = 29/607 (4%)

Query: 4   ERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVF 63
           + ESELV  CIEAAC+S ESV KWR Q RSL+RLP+HLADSLLR LI RRL++PSLLEVF
Sbjct: 2   KSESELVGFCIEAACESRESVDKWRMQSRSLDRLPSHLADSLLRRLIARRLLYPSLLEVF 61

Query: 64  KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS 123
           KH+AE +++RG+NSVDAEWMAYLGA+R+LR LN++DC RV++SALW +TGM+ L+ELDLS
Sbjct: 62  KHSAEEVDVRGDNSVDAEWMAYLGAYRHLRYLNLSDCHRVSTSALWPITGMSSLQELDLS 121

Query: 124 RCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS 183
           RC KV DAG+ H+LSI  LE+L +SET +TA G+ LL+SL+NLS+LDLGGLPV D+ L S
Sbjct: 122 RCFKVNDAGINHILSIPNLERLRISETSVTAKGVKLLASLKNLSLLDLGGLPVDDVALTS 181

Query: 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI 243
           LQVL +L Y+DLWGS++SN+GA+VL  FP+L++LNLAWT VTKLP +S LE LN+SNCTI
Sbjct: 182 LQVLKRLHYIDLWGSKISNKGASVLNTFPKLTYLNLAWTSVTKLPKLSFLEYLNMSNCTI 241

Query: 244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKAL 303
           DSILE  ++KAPLAK+ L+G  F+NE EA LY  T+ LSFLDV+NSS  RF FL++MK +
Sbjct: 242 DSILE--DDKAPLAKLILSGAMFMNEAEALLYANTNFLSFLDVANSSFHRFFFLSKMKVI 299

Query: 304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
           EHL+LSS M+GDDSVEMVAC G NL++LNLS TR SSAG+GILAGH+P+LEILSLS T +
Sbjct: 300 EHLNLSSCMMGDDSVEMVACAGGNLKSLNLSGTRVSSAGLGILAGHVPHLEILSLSQTPV 359

Query: 364 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 423
           DD AIS++SMMPSLK +D+SNT+IKGF+ Q   + + +LSL ALQNL  LERLNLE TQV
Sbjct: 360 DDTAISFISMMPSLKDVDLSNTNIKGFLHQGRTDVNSLLSLMALQNLK-LERLNLEHTQV 418

Query: 424 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 483
            D  L+PLS+F+EL +LSL++ASL D+SL+ LSS+ KLTNLSI DAVLTN GL  FK P 
Sbjct: 419 RDEALYPLSSFQELRYLSLKSASLADISLYYLSSIPKLTNLSICDAVLTNYGLDMFKAPE 478

Query: 484 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLV 543
           +LKLLDL G WLLTED IL FC+ HP++EV HEL  + P +Q G N  SPSR++ +   +
Sbjct: 479 TLKLLDLKGCWLLTEDTILSFCRNHPQVEVRHELGTLFPVNQNGLNHSSPSRSTSKTMQM 538

Query: 544 KQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLS 603
            +K+D +P+S  F+                          DQRLKYSR+ELL LQ++SL 
Sbjct: 539 TKKKDQIPLSPYFV--------------------------DQRLKYSRDELLALQFTSLP 572

Query: 604 LARPDDS 610
           LA   +S
Sbjct: 573 LASSSES 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426352|ref|XP_002266070.1| PREDICTED: uncharacterized protein LOC100261612 [Vitis vinifera]

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/604 (61%), Positives = 466/604 (77%), Gaps = 22/604 (3%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV LCIEAA QS ++V+KWRRQRR+L+R+P+HLA++LL  LIRRR++ PSLLEVFK 
Sbjct: 9   ETRLVCLCIEAASQSRDAVEKWRRQRRTLQRMPSHLAEALLHRLIRRRILNPSLLEVFKF 68

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+SVDAEWMAY+G F  L SLN+ADC+R+T+SALW + GM  LKELDLSRC
Sbjct: 69  SVEKIDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRC 128

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
           +K +D+G++HL+SI TL+KL +SETG+TADGI L+SSL NLSVLDLGGLPVTDLVL SLQ
Sbjct: 129 IKFSDSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQ 188

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLTKL+YLDLWGS++SN+GAA L +FP+LSFLN+AWT VT LP++ S+ CLN+SNCTI S
Sbjct: 189 VLTKLQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTTLPDLPSIACLNMSNCTIHS 248

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
           + EG   KA L KI+++G TF+N  EAFL+IETS LSFLDVS SSL+ FCFL+ MKALEH
Sbjct: 249 MFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALEH 308

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLS +M+GDDS++++AC+GANLRNLNLSNTR SSAGV ILAG +PNLE +SLS T +DD
Sbjct: 309 LDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDD 368

Query: 366 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV--LSLTALQNLNHLERLNLEQTQV 423
            AISY+SMM S+K I++SNT++KG I    ++++LV  LSL AL +LN+++RL+LE TQV
Sbjct: 369 VAISYISMMSSVKIINLSNTNVKGLIW---SDSELVWELSLAALHSLNYVKRLDLEGTQV 425

Query: 424 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 483
            D  L PL  F++L  LSL+   LTD+SL+QLSSL  L NLSI D VLTN GL SFKPP 
Sbjct: 426 EDEALCPLLRFQQLNELSLKGTRLTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPA 485

Query: 484 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLV 543
           +LKLLDL G WLLTEDAIL F K  P+IEV HEL  I PS+Q  SN  SPS+        
Sbjct: 486 TLKLLDLRGCWLLTEDAILSFHKNDPQIEVRHELVHITPSEQNASNRSSPSQKG------ 539

Query: 544 KQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLS 603
            +KQ  +P S S      +  M + F             + QR KYSREELL +++S+L+
Sbjct: 540 -KKQQKLPKSQSRSKEETVIGMEFPF----------LESSYQRWKYSREELLAMEHSTLA 588

Query: 604 LARP 607
           L  P
Sbjct: 589 LNFP 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742329|emb|CBI34478.3| unnamed protein product [Vitis vinifera]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/604 (61%), Positives = 465/604 (76%), Gaps = 32/604 (5%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV LCIEAA QS ++V+KWRRQRR+L+R+P+HLA++LL  LIRRR++ PSLLEVFK 
Sbjct: 9   ETRLVCLCIEAASQSRDAVEKWRRQRRTLQRMPSHLAEALLHRLIRRRILNPSLLEVFKF 68

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+SVDAEWMAY+G F  L SLN+ADC+R+T+SALW + GM  LKELDLSRC
Sbjct: 69  SVEKIDLRGESSVDAEWMAYIGGFCCLCSLNIADCQRITNSALWPIIGMPNLKELDLSRC 128

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
           +K +D+G++HL+SI TL+KL +SETG+TADGI L+SSL NLSVLDLGGLPVTDLVL SLQ
Sbjct: 129 IKFSDSGLRHLISIRTLQKLCISETGVTADGINLVSSLTNLSVLDLGGLPVTDLVLSSLQ 188

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLTKL+YLDLWGS++SN+GAA L +FP+LSFLN+AWT VT LP++ S+ CLN+SNCTI S
Sbjct: 189 VLTKLQYLDLWGSKISNKGAADLVVFPKLSFLNIAWTDVTTLPDLPSIACLNMSNCTIHS 248

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
           + EG   KA L KI+++G TF+N  EAFL+IETS LSFLDVS SSL+ FCFL+ MKALEH
Sbjct: 249 MFEGEGAKALLEKITVSGATFLNVSEAFLFIETSFLSFLDVSRSSLNSFCFLSCMKALEH 308

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLS +M+GDDS++++AC+GANLRNLNLSNTR SSAGV ILAG +PNLE +SLS T +DD
Sbjct: 309 LDLSFTMMGDDSIQLIACIGANLRNLNLSNTRVSSAGVSILAGCVPNLETISLSHTPVDD 368

Query: 366 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV--LSLTALQNLNHLERLNLEQTQV 423
            AISY+SMM S+K I++SNT++KG I    ++++LV  LSL AL +LN+++RL+LE TQV
Sbjct: 369 VAISYISMMSSVKIINLSNTNVKGLIW---SDSELVWELSLAALHSLNYVKRLDLEGTQV 425

Query: 424 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 483
            D  L PL  F++L  LSL+   LTD+SL+QLSSL  L NLSI D VLTN GL SFKPP 
Sbjct: 426 EDEALCPLLRFQQLNELSLKGTRLTDLSLYQLSSLPNLINLSIGDTVLTNGGLNSFKPPA 485

Query: 484 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLV 543
           +LKLLDL G WLLTEDAIL F K  P+IEV HEL  I PS+Q  SN  SPS+        
Sbjct: 486 TLKLLDLRGCWLLTEDAILSFHKNDPQIEVRHELVHITPSEQNASNRSSPSQKG------ 539

Query: 544 KQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLS 603
            +KQ  +P S S          R   + +           DQR KYSREELL +++S+L+
Sbjct: 540 -KKQQKLPKSQS----------RSKEETV----------IDQRWKYSREELLAMEHSTLA 578

Query: 604 LARP 607
           L  P
Sbjct: 579 LNFP 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537779|ref|XP_002509956.1| protein binding protein, putative [Ricinus communis] gi|223549855|gb|EEF51343.1| protein binding protein, putative [Ricinus communis]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/600 (64%), Positives = 463/600 (77%), Gaps = 24/600 (4%)

Query: 4   ERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVF 63
           E ES+LVRLCIEAAC+S ES+ KWRRQRR+LERLP+ LAD LLR L+ RRL+FPSLLEVF
Sbjct: 2   ETESQLVRLCIEAACESRESIDKWRRQRRTLERLPSPLADILLRRLLHRRLLFPSLLEVF 61

Query: 64  KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS 123
           K + E ++LRGEN+VDAEWMAYLGAFRYLR LN+ADC ++TSSALW+LTGMT LKELDLS
Sbjct: 62  KQSVEVVDLRGENAVDAEWMAYLGAFRYLRYLNLADCNKITSSALWSLTGMTSLKELDLS 121

Query: 124 RCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS 183
           R VKVTDAG++HLLSIS+LE L + ETGLTA G+ALL+SL NLSVLDLGGLPVTD+ L S
Sbjct: 122 RSVKVTDAGIRHLLSISSLEILRIPETGLTAKGVALLTSLTNLSVLDLGGLPVTDMALSS 181

Query: 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI 243
           LQVLTKLEYLDLWGS +SN G AVL++FP+LSFLNL WT VT+LP++ SLE LNLSNCTI
Sbjct: 182 LQVLTKLEYLDLWGSNISNNGVAVLQLFPKLSFLNLGWTSVTRLPSMLSLEYLNLSNCTI 241

Query: 244 DSILE--GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK 301
           +S+LE  G+ +KAPL K+ L+G TF NE EAF  IE   LSFLDVSNSSL  F FL  MK
Sbjct: 242 ESLLEGDGDGDKAPLTKVILSGATFPNEAEAFYNIEPRFLSFLDVSNSSLQGFYFLHDMK 301

Query: 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
            LEHLDLSS+M+GDD++E VAC+GANL NLNLS TR +SAG+ ILA H+P LE LSLS  
Sbjct: 302 MLEHLDLSSTMMGDDAIEAVACIGANLTNLNLSKTRVTSAGLAILAEHVPKLEYLSLSHA 361

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421
            +DD+A+SY+ MM SLK +D+SNT+IKGFI+Q+G ET+L+ SL ALQ L+ L+ LNLE T
Sbjct: 362 LVDDFALSYIGMMSSLKVVDLSNTNIKGFIRQMGVETNLIPSLKALQGLSGLQSLNLEHT 421

Query: 422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP 481
           QV DA + P+S+F+EL HLSL++ASL D +L+ LSSLSKLT+L I DAVLTN GL  F+P
Sbjct: 422 QVRDAAVAPVSSFQELSHLSLKSASLADETLYHLSSLSKLTSLVIGDAVLTNCGLDLFRP 481

Query: 482 PRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRAS 541
           P +LK+LDL G WLLTE+AI  FC  HP I++ HEL  +   ++  S   SPSR   R  
Sbjct: 482 PVALKMLDLRGCWLLTEEAISSFCTKHPAIKLRHELLNVSSPNESSSYRASPSRILSRPP 541

Query: 542 LVKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSS 601
            V +KQ  MP+S         + M   F              DQRLKYSREELL LQY S
Sbjct: 542 HVSRKQGKMPVS---------WPMPQHF-------------IDQRLKYSREELLALQYQS 579

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464060|ref|XP_004149747.1| PREDICTED: uncharacterized protein LOC101203036 [Cucumis sativus] gi|449505065|ref|XP_004162366.1| PREDICTED: uncharacterized protein LOC101225004 [Cucumis sativus]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 344/616 (55%), Positives = 436/616 (70%), Gaps = 40/616 (6%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV LCI +AC+S +SV+KWRRQ+R+LERLP+HLAD+LLR L  RRL++PSLLEVFK+
Sbjct: 2   ENRLVELCINSACRSKDSVEKWRRQKRTLERLPSHLADALLRRLHARRLLYPSLLEVFKY 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
             E ++L GEN+VD+EWMAYLG+FRYL+SLNV++C R++SS +W ++GMT L+EL++SRC
Sbjct: 62  TIEVVDLSGENAVDSEWMAYLGSFRYLQSLNVSNCHRLSSSGVWTISGMTTLRELNVSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
           +KVTDAG++HLLSI TLEKL ++ETG+TA G+ LLSSL+ L  LDLGGLPVTD  L SLQ
Sbjct: 122 LKVTDAGIRHLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLTKL+YLDLWGS++SN G+ VL+MFP+LSFLN+AWT VTK PN+  LECLN+SNC IDS
Sbjct: 182 VLTKLQYLDLWGSKISNSGSDVLQMFPKLSFLNIAWTSVTKFPNLPHLECLNMSNCIIDS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
            L+G   K P  K+  +G TF NE E   ++    L +LD SN+SL RFCFL++MKA+EH
Sbjct: 242 TLKGLGAKVPPRKLIASGATFSNETEDLGFVAMDALYYLDFSNASLHRFCFLSRMKAVEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+ IGD SVE++A VG NL+ LNLS T  SS+G+G LAG + NLE LSLS T +DD
Sbjct: 302 LDLSSTTIGDSSVELIASVGENLKYLNLSCTAVSSSGIGSLAGKVSNLETLSLSHTMVDD 361

Query: 366 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 425
            A+SYM+MMPSLK ID+S TDIKG+I     ET  V SLT LQNL+ LE LNLE T V D
Sbjct: 362 VALSYMNMMPSLKCIDLSETDIKGYIHLSAPETVKVFSLTELQNLDCLEMLNLEHTHVDD 421

Query: 426 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485
            +L PLS F++L HL LR+ S TD  L  LS L  L  LSIRDAVLTN    +FKP  +L
Sbjct: 422 ESLRPLSRFRKLSHLMLRSPSFTDTVLSYLSILPNLKTLSIRDAVLTNQAFDTFKPVATL 481

Query: 486 KLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPS----PSRTSLRAS 541
           + +DL G WLLTED +  F +  P+I+V HEL     S+   ++ PS    P +  L  +
Sbjct: 482 QKIDLRGCWLLTEDGLSVFHRRFPQIDVRHELFHFS-SNPTSTDQPSTHFIPKKIQLNQT 540

Query: 542 LVKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSS 601
               +   MP                       ++FV     DQRLKYS+EELL LQ+SS
Sbjct: 541 ---SRSTGMP-----------------------SYFV-----DQRLKYSKEELLALQFSS 569

Query: 602 LSLARPDDSSTQDAMG 617
           L    P  S++   MG
Sbjct: 570 L----PHGSTSVPEMG 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803756|ref|XP_002869762.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp. lyrata] gi|297315598|gb|EFH46021.1| hypothetical protein ARALYDRAFT_492485 [Arabidopsis lyrata subsp. lyrata]

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 315/607 (51%), Positives = 406/607 (66%), Gaps = 39/607 (6%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           ES LVRLCIE AC+SG++V++WR QRRSLERLP HLAD+LLR L+ +RL+FPSLLE FKH
Sbjct: 2   ESPLVRLCIEEACKSGDAVERWRLQRRSLERLPPHLADALLRRLLHKRLLFPSLLEGFKH 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+S++AEWMAY+G F  L SLN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct: 62  SVENIDLRGESSINAEWMAYIGGFVNLVSLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            KVTDAG+KHL S+  L+KLW+S+TG+T  GI+LL+SLQ LS+LDLGGLPVTD  L +LQ
Sbjct: 122 FKVTDAGIKHLQSVVNLKKLWISQTGVTKVGISLLASLQKLSLLDLGGLPVTDHNLIALQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
            LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT VT+ PNI  LECL+++ CTI S
Sbjct: 182 ELTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIVS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
             + + + A L K+ L+G  F  E EA  +   S +++LDVS +SL  F F+  M  LEH
Sbjct: 242 EPKTHCSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSFIETMINLEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+  GDDSV  VACVG NL+NLN+S+T+ +SAGVG LAGH+P LE  SLS T +DD
Sbjct: 302 LDLSSTAFGDDSVGFVACVGENLKNLNVSDTKITSAGVGNLAGHVPQLETFSLSQTFVDD 361

Query: 366 YAISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 424
            +I  +S MMP +K +D+  T I+        E     SL ALQ+L  L+ L+LE   + 
Sbjct: 362 LSILLISTMMPCVKALDLGMTSIR--------EEQAEPSLAALQSLTSLKTLSLEHPYLG 413

Query: 425 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484
           D  L  LS+   L HLSLR+ SLTD +LH LSSL  L +L +RDAVLT++GL  F+PP+ 
Sbjct: 414 DTALSALSSLTGLTHLSLRSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPKR 473

Query: 485 LKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ----IGSNGPSPSRTSLRA 540
           L+ LDL G WLLT+D I   CK +P I+V HE       DQ      S+ P       R 
Sbjct: 474 LRTLDLKGCWLLTKDDIAGLCKRYPHIKVRHEHDDSSSLDQNQFLPRSSTPQSFGKVPRR 533

Query: 541 SLVKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYS 600
           S  ++ +  + +  SFL                          DQR+KY+REEL+ LQ S
Sbjct: 534 SNNQRPESSVAVPRSFL--------------------------DQRVKYNREELVALQNS 567

Query: 601 SLSLARP 607
            LS   P
Sbjct: 568 PLSQLLP 574

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186701224|gb|ACC91251.1| leucine-rich repeat family protein [Arabidopsis halleri]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 321/608 (52%), Positives = 412/608 (67%), Gaps = 27/608 (4%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           ES LVRLCIE AC+SG +V++WR QRRSLERLP HLAD+LLR L+ +RL+FPSLLE FKH
Sbjct: 2   ESALVRLCIEEACKSGYAVERWRLQRRSLERLPPHLADALLRRLLHKRLLFPSLLEGFKH 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRGE+S++AEWMAY+G F  L SLN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct: 62  SVENIDLRGESSINAEWMAYIGGFVNLISLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            KVTDAG+KHL S+S L+KLW+S+TG+T  GI+LL+SL+ LS+LDLGGLPVTD  L +LQ
Sbjct: 122 WKVTDAGIKHLQSVSNLKKLWISQTGVTKVGISLLASLKKLSLLDLGGLPVTDHNLIALQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
            LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT VT+ PNI  LECL+++ CTI S
Sbjct: 182 ALTKLEYLDIWGSNVTNQGAISILQFSNLSFLNLSWTSVTQTPNIPHLECLHMNMCTIVS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
             + + + A L K+ L+G  F  E EA  +   S +++LDVS +SL  F FL  M  LEH
Sbjct: 242 EPKTHSSLASLKKLVLSGANFSAETEALSFTNKSSITYLDVSKTSLQNFSFLETMINLEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+  GDDSV  VACVG NLRNLN+S T+ +SAGVG LAGH+P LE  SLS T +DD
Sbjct: 302 LDLSSTAFGDDSVGFVACVGENLRNLNVSETKITSAGVGNLAGHVPQLETFSLSQTFVDD 361

Query: 366 YAISYMS-MMPSLKFIDISNTDIKGFI-QQVGAETDLVLSLTALQNLNHLERLNLEQTQV 423
            +I  +S MMP +K +D+  T I+GFI QQ   E     SL ALQ+L  L+ L+LE   +
Sbjct: 362 LSILLISTMMPCVKALDLGMTSIRGFILQQSPQEEQAEPSLAALQSLTSLKTLSLEHPYL 421

Query: 424 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 483
            D  L  LS+   L HLSLR+ SLTD +LH LSSL  L +L +RDAVLT++GL  F+PP+
Sbjct: 422 GDTALSALSSLTGLTHLSLRSTSLTDSTLHHLSSLPNLVSLGVRDAVLTSNGLEKFRPPK 481

Query: 484 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHE--LSVICPSDQIGSNGPSPSRTSLRAS 541
            L+ LDL G WLLT+D I   CK +P I+V HE  +S     +Q+     +P   S    
Sbjct: 482 RLRTLDLKGCWLLTKDDIAGLCKRYPHIKVRHEHDISSSLDQNQLLPRSSTPQTQSFGKL 541

Query: 542 LVKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSS 601
             +  Q P                  S+  +  +F       DQR+KY+REEL+ LQ S 
Sbjct: 542 PRRNNQRP-----------------ESYVAVPRSFL------DQRVKYNREELVALQKSP 578

Query: 602 LSLARPDD 609
           LS   P +
Sbjct: 579 LSQLLPRE 586

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567079|ref|NP_194115.3| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|20466546|gb|AAM20590.1| unknown protein [Arabidopsis thaliana] gi|22136448|gb|AAM91302.1| unknown protein [Arabidopsis thaliana] gi|51971383|dbj|BAD44356.1| putative protein [Arabidopsis thaliana] gi|332659411|gb|AEE84811.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 307/604 (50%), Positives = 404/604 (66%), Gaps = 26/604 (4%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           ES LVRLC++ AC+SG++V++WR QRRSLE LP HLAD+LLR L+++RL+FPSLLE FK+
Sbjct: 2   ESPLVRLCLKEACKSGDAVERWRLQRRSLESLPPHLADALLRRLLKKRLLFPSLLEGFKY 61

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+LRG++SV+AEWMAY+G F  L +LN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct: 62  SVENIDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            KVTDAGMKHL S+  L+KLW+S+TG+T  GI+LL+SL+ LS+LDLGGLPVTD  L SLQ
Sbjct: 122 FKVTDAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQ 181

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
            LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT +T+ PNI  LECL+++ CTI S
Sbjct: 182 ALTKLEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVS 241

Query: 246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
             + + + A L K+ L+G  F  E E+  +   S +++LDVS +SL  F FL  M  LEH
Sbjct: 242 EPKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEH 301

Query: 306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           LDLSS+  GDDSV  VACVG NL+NLN+S+T+ + +GVG LAGH+P LE LS+S T +DD
Sbjct: 302 LDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDD 361

Query: 366 YAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 424
            +I  +S  MP +K +D+      GF   +  + +   SL ALQ+L  LE L+LE   + 
Sbjct: 362 LSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPYLG 421

Query: 425 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484
           D  L  LS+   L HLSL + SLTD +LH LSSL  L +L +RD VLT++GL  F+PP  
Sbjct: 422 DKALSGLSSLTGLTHLSLTSTSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNR 481

Query: 485 LKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSP-SRTSLRASLV 543
           L+ LDL G WLLT+D I   CK +P I+V HE +     DQ   N   P S T      V
Sbjct: 482 LRTLDLQGCWLLTKDDIAGLCKRYPHIKVRHEHADSSSLDQ---NQLLPRSSTPQSFGKV 538

Query: 544 KQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLS 603
            ++ +  P S                     +  V  S  DQR+KY+REEL+ LQ S LS
Sbjct: 539 ARRNNQRPES---------------------SVAVPRSFLDQRVKYNREELVALQNSPLS 577

Query: 604 LARP 607
              P
Sbjct: 578 QLLP 581

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326513166|dbj|BAK06823.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 298/596 (50%), Positives = 409/596 (68%), Gaps = 29/596 (4%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E  L+  CI+AA +   SV+ WRRQRRSLERLP+ LAD+LLR L  RRL+FPSLLEVF+H
Sbjct: 36  EQRLLDRCIDAAARCPASVEAWRRQRRSLERLPSQLADALLRRLAARRLLFPSLLEVFRH 95

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + + I+L G+ +VDAEW+AYLG+FRYL  L +ADC++V  SA+W L+GM+ LKELDLSRC
Sbjct: 96  SVQEIDLSGDIAVDAEWLAYLGSFRYLGVLKLADCKKVDHSAIWPLSGMSMLKELDLSRC 155

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            K+TDAG+KH++SI +LEKL LSETGLT +G+ L+S+L+ L +LDLGG+ +TD  LRSLQ
Sbjct: 156 SKITDAGIKHIVSIDSLEKLHLSETGLTDNGVMLISALKGLILLDLGGIHMTDKALRSLQ 215

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLT+LE+LD+WGS++++ GA++L+ F  L FLN++WT VT+LP++ +++ LN+SNCTI S
Sbjct: 216 VLTQLEHLDVWGSEITDEGASILEAFTGLRFLNVSWTHVTRLPHLPNMKYLNMSNCTIYS 275

Query: 246 ILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALE 304
           I  G+ E   PL K + +  +F +  E F  I  S  SFLD+S  SLS    L +MK+LE
Sbjct: 276 ICGGDSEVHIPLQKFTASAASFGDIDEVFSSIVASSFSFLDMSGCSLSNLYGLQKMKSLE 335

Query: 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           HLD+S + + DD+VE VA +G  LR L+L NT  +S  + ILAG +PNL  LSL+ T+ID
Sbjct: 336 HLDISLNRVTDDAVEYVANIGMKLRYLSLKNTGITSQALCILAGTVPNLASLSLAYTKID 395

Query: 365 DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 424
           D A+ Y+SMMPSL+ ID+S+T IKGF  +V A ++ + SL  L++L +LE LNLE   +S
Sbjct: 396 DSALVYISMMPSLRVIDLSHTTIKGFT-RVEANSEKIPSLPLLEHLIYLESLNLEDAPLS 454

Query: 425 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484
           D  + P+++F+ L +L L++  L+D  LH LSS S L +L    +VL+NSGL  F PP  
Sbjct: 455 DEVIPPMTSFRALKYLYLKSDFLSDPGLHALSSASNLIHLGFCGSVLSNSGLLEFVPPAQ 514

Query: 485 LKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRA--SL 542
           L +LDL G W+LT DAI  F + HP IEV HEL+     ++ G++    SR   RA   +
Sbjct: 515 LHVLDLSGCWILTGDAISTFRRHHPSIEVRHELTQELQPNRGGTSQVHKSRQLPRAKTKV 574

Query: 543 VKQKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQ 598
           V    D               S R+S       FFV     DQR+KYSREE++E+Q
Sbjct: 575 VNSSAD---------------SRRHSG-----IFFV-----DQRIKYSREEMMEIQ 605

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218196286|gb|EEC78713.1| hypothetical protein OsI_18882 [Oryza sativa Indica Group]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 297/599 (49%), Positives = 403/599 (67%), Gaps = 26/599 (4%)

Query: 6   ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKH 65
           E+ LV  CI+AA     +V+ WRRQRRSLERLPA LAD+LLR L  RRL+FPSLLEVF+H
Sbjct: 11  ETPLVDRCIDAAAGGAATVEAWRRQRRSLERLPAQLADALLRRLAARRLLFPSLLEVFQH 70

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
           + E I+L G  +VDAEW+AYLGAFRYLR L +ADC+ V SSA+WAL+GM+ LKELDLSRC
Sbjct: 71  SVEEIDLSGHIAVDAEWLAYLGAFRYLRVLKLADCKNVNSSAVWALSGMSTLKELDLSRC 130

Query: 126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
            K++DAG+KH+ SI +LEKL +S+TGLT +G+  +SSL NL +LDLGG+  TD  LRSLQ
Sbjct: 131 SKISDAGIKHIASIESLEKLHVSQTGLTDNGVMAISSLINLRLLDLGGVRFTDKALRSLQ 190

Query: 186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
           VLT+LE+LD+WGS+++N GA+VL  F  LSFLN++WT VT LP + +L CLN+SNCTI S
Sbjct: 191 VLTQLEHLDIWGSEITNEGASVLIAFTSLSFLNISWTRVTCLPILLTLRCLNMSNCTIHS 250

Query: 246 ILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALE 304
           I  G  +    L K+ ++  +F N  E F  I  S L++LD+S+ S S   FL  M+ LE
Sbjct: 251 ICNGEFQVLIHLEKLVISAASFGNIDEVFSSILPSSLTYLDMSSCSSSNLYFLGNMRNLE 310

Query: 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           HLDLS S I  D++E +A +G NL  L+LSN+  +S  + +LAG +P+L  LSL+ T+ID
Sbjct: 311 HLDLSYSRIISDAIEYIANIGMNLMFLSLSNSEVTSQALCVLAGTVPSLTTLSLAHTKID 370

Query: 365 DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 424
           D A+ Y+SMMPSL+ +++S T IKGF+ +   +   VLSL+AL+ L +LE LNL  TQ+ 
Sbjct: 371 DSALLYISMMPSLRILNLSRTCIKGFMMENSVK---VLSLSALEELKYLESLNLNNTQLM 427

Query: 425 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484
           D  + PL++F+ L +L L++  L+D +LH LSS S L +L     +L+ +GL  F PP +
Sbjct: 428 DDVIPPLASFRALKYLFLKSDFLSDPALHALSSASNLIHLGFCGNILSTTGLRKFVPPAT 487

Query: 485 LKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVK 544
           L++LDL G W+LT DAI  FC  HP IEV HEL       Q    G S    S R    +
Sbjct: 488 LRMLDLSGCWILTGDAISAFCTCHPVIEVRHEL---IQELQANYGGTSHLHKSSR----Q 540

Query: 545 QKQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLS 603
            +Q    ++ S  G   L               +CF   D+++KYS+EE++ELQ+ + S
Sbjct: 541 PQQVKAKVAKSLAGPSRLAD-------------ICF--VDEKIKYSKEEMMELQHQAKS 584

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	619
TAIR|locus:2138131	597	AT4G23840 "AT4G23840" [Arabido	0.825	0.855	0.521	5.4e-134
TAIR|locus:2036199	585	AT1G15740 [Arabidopsis thalian	0.642	0.680	0.267	3.2e-22
UNIPROTKB|Q723K6	800	inlA "Internalin-A" [Listeria	0.479	0.371	0.285	2.9e-11
TAIR|locus:2143320	642	AT5G27920 "AT5G27920" [Arabido	0.623	0.601	0.252	1.2e-10
DICTYBASE|DDB_G0291424	902	DDB_G0291424 "Transcription fa	0.508	0.349	0.236	2.5e-10
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.441	0.252	0.264	5e-09
ZFIN|ZDB-GENE-030131-5920	411	fbxl14a "F-box and leucine-ric	0.457	0.688	0.267	1e-08
UNIPROTKB|Q17R01	400	FBXL14 "F-box/LRR-repeat prote	0.462	0.715	0.266	1.3e-08
MGI|MGI:2141676	400	Fbxl14 "F-box and leucine-rich	0.462	0.715	0.266	1.3e-08
RGD|1305523	400	Fbxl14 "F-box and leucine-rich	0.462	0.715	0.266	1.3e-08

TAIR|locus:2138131 AT4G23840 "AT4G23840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
 Identities = 267/512 (52%), Positives = 351/512 (68%)

Query:     6 ESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSXXXXXXXXXXXFPSLLEVFKH 65
             ES LVRLC++ AC+SG++V++WR QRRSLE LP HLAD+           FPSLLE FK+
Sbjct:     2 ESPLVRLCLKEACKSGDAVERWRLQRRSLESLPPHLADALLRRLLKKRLLFPSLLEGFKY 61

Query:    66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC 125
             + E I+LRG++SV+AEWMAY+G F  L +LN++DC+R+ SS LW +TG+T L ELDLSRC
Sbjct:    62 SVENIDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query:   126 VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQ 185
              KVTDAGMKHL S+  L+KLW+S+TG+T  GI+LL+SL+ LS+LDLGGLPVTD  L SLQ
Sbjct:   122 FKVTDAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQ 181

Query:   186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS 245
              LTKLEYLD+WGS V+N+GA  +  F  LSFLNL+WT +T+ PNI  LECL+++ CTI S
Sbjct:   182 ALTKLEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVS 241

Query:   246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEH 305
               + + + A L K+ L+G  F  E E+  +   S +++LDVS +SL  F FL  M  LEH
Sbjct:   242 EPKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEH 301

Query:   306 LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
             LDLSS+  GDDSV  VACVG NL+NLN+S+T+ + +GVG LAGH+P LE LS+S T +DD
Sbjct:   302 LDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDD 361

Query:   366 YAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 424
              +I  +S  MP +K +D+      GF   +  + +   SL ALQ+L  LE L+LE   + 
Sbjct:   362 LSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEKSLAALQSLTSLETLSLEHPYLG 421

Query:   425 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS 484
             D  L  LS+   L HLSL + SLTD +LH LSSL  L +L +RD VLT++GL  F+PP  
Sbjct:   422 DKALSGLSSLTGLTHLSLTSTSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPPNR 481

Query:   485 XXXXXXXXXXXXTEDAILQFCKMHPRIEVWHE 516
                         T+D I   CK +P I+V HE
Sbjct:   482 LRTLDLQGCWLLTKDDIAGLCKRYPHIKVRHE 513

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2036199 AT1G15740 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 3.2e-22, P = 3.2e-22
 Identities = 113/423 (26%), Positives = 201/423 (47%)

Query:    69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKV 128
             +++  G +  D+  ++  G    L SLN   C ++++  L  L+G++ L  L   R   +
Sbjct:   142 SVDFSGSDITDSGLVSLKGCTN-LESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAAI 200

Query:   129 TDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVL 187
             T  GM+ L ++  L+KL L +      G+  L +L  L  L++     +TD  +  L VL
Sbjct:   201 TAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVL 260

Query:   188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL-AWTGVTK-----LPNISSLECLNLSNC 241
             T L  L +  S++++ G + LK   +L+ LNL     VT      L  ++ L  LNL+ C
Sbjct:   261 TNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRC 320

Query:   242 TI-DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF-LDVSNSSLSRFCFLTQ 299
                DS  E   +   L  ++L      N     L   T L S  LD           L+ 
Sbjct:   321 NFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSG 380

Query:   300 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
             M  L+ L+LS + +G + +  ++ + +NL ++NLS T  + +G+  L+G L +L  L+L 
Sbjct:   381 MLELKSLELSDTEVGSNGLRHLSGL-SNLESINLSFTVVTDSGLRKLSG-LTSLRTLNLD 438

Query:   360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLE 419
                + D  +S ++ +  L  +D+    I          TD       L+NL  L+ L + 
Sbjct:   439 ARHVTDAGLSALTSLTGLTHLDLFGARI----------TDS--GTNHLRNLKKLQSLEIC 486

Query:   420 QTQVSDATLFPLSTFKELIHLSL-RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 478
                ++D  +  +     L  L+L +N++LTD +L  +S L+ L +L++ ++ +++SGL  
Sbjct:   487 GGGLTDTGVKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRH 546

Query:   479 FKP 481
              KP
Sbjct:   547 LKP 549

GO:0005886 "plasma membrane" evidence=ISM

UNIPROTKB|Q723K6 inlA "Internalin-A" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 190 (71.9 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 95/333 (28%), Positives = 162/333 (48%)

Query:   144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR 203
             K  L +T +T D ++  + L  ++ L    L +  +    L+ L  L  ++   +Q+++ 
Sbjct:    58 KTVLGKTNVT-DTVSQ-TDLDQVTTLQADRLGIKSI--DGLEYLNNLTQINFSNNQLTD- 112

Query:   204 GAAVLKMFPRLSFL---NLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS 260
                 LK   +L  +   N     +T L N+S+L  L L N  I  I +  +N   L ++ 
Sbjct:   113 -ITPLKDLTKLVDILMNNNQIADITPLANLSNLTGLTLFNNQITDI-DPLKNLTNLNRLE 170

Query:   261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320
             L+  T I++  A   + TSL   L   N  ++    L  +  LE LD+SS+ + D SV  
Sbjct:   171 LSSNT-ISDISALSGL-TSLQQ-LSFGNQ-VTDLKPLANLTTLERLDISSNKVSDISV-- 224

Query:   321 VACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 379
             +A +  NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  
Sbjct:   225 LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTD 277

Query:   380 IDISNTDIKGFIQQVGAE--TDLVLSLTALQNLNHLERL----NLE--QTQVSDATLFPL 431
             +D++N  I       G    T+L L    + N++ L  L    NLE  + Q+ D +  P+
Sbjct:   278 LDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PI 335

Query:   432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464
             S  K L +L+L   +++D+S   +SSL+KL  L
Sbjct:   336 SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL 366

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 107/424 (25%), Positives = 186/424 (43%)

Query:    68 EAIELRGENSVDAEWMAYLGAFRY-LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV 126
             +++ L    +V A  +  L    + L  ++V+ C         AL+  T L+EL + +C+
Sbjct:    98 KSLNLSRSTAVRARGLETLARMCHALERVDVSHCWGFGDREAAALSSATGLRELKMDKCL 157

Query:   127 KVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSL-QNLSVLDLGGLPVTDLVLRS 183
              ++D G+  ++   S L K+ L      +D GI LL  + + L  LD+  L +T+  +RS
Sbjct:   158 SLSDVGLARIVVGCSNLNKISLKWCMEISDLGIDLLCKICKGLKSLDVSYLKITNDSIRS 217

Query:   184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTI 243
             + +L KLE LD+    + + G         L FL     G   L  +    C  +S   +
Sbjct:   218 IALLVKLEVLDMVSCPLIDDGG--------LQFLE---NGSPSLQEVDVTRCDRVSLSGL 266

Query:   244 DSILEGNEN----KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQ 299
              SI+ G+ +    KA      ++G+ F+   +   +++T  +    VS+SSL      + 
Sbjct:   267 ISIVRGHPDIQLLKASHCVSEVSGS-FLKYIKGLKHLKTIWIDGAHVSDSSLVSLS--SS 323

Query:   300 MKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTRF-SSAGVGILAGHLPNLEILS 357
              ++L  + LS  + + D  +  +A    NL+ LNL+   F +   +  +A    NL  L 
Sbjct:   324 CRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLK 383

Query:   358 LSGTQ-IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL 416
             L     I +  +  +    S+   ++  TD  G +   G E      ++   NL  L +L
Sbjct:   384 LESCHLITEKGLQSLGCY-SMLVQELDLTDCYG-VNDRGLEY-----ISKCSNLQRL-KL 435

Query:   417 NLEQTQVSDATLFPL-STFKELIHLSL-RNASLTDVSLHQLSSLSKLTNLSIRD--AVLT 472
              L  T +SD  +F + S   +L+ L L R A   D  L  LS   K  N  I      LT
Sbjct:   436 GL-CTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLNRLILSYCCELT 494

Query:   473 NSGL 476
             ++G+
Sbjct:   495 DTGV 498

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009407 "toxin catabolic process" evidence=RCA

DICTYBASE|DDB_G0291424 DDB_G0291424 "Transcription factor SKN7" [Dictyostelium discoideum (taxid:44689)]

 Score = 182 (69.1 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 82/346 (23%), Positives = 160/346 (46%)

Query:     9 LVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSXXXXXXXXXXXFPSLLEVFKH-NA 67
             L+ +C+E   ++ + ++       +LE LP  L                  L +F++   
Sbjct:   360 LMDICLEELVKNIDKIE-------TLEPLPDELCQKIIPLFQRRKILSLKTLSLFRNCKL 412

Query:    68 EAIELRG-ENSVDAEWMAYL-GAFRY-LRSLNVADCRRVTSSALWALTGMTCLKELDLSR 124
               +EL G E +++ EW+    G  +  L S+N++    +T   + +L+ +  L  LD+S 
Sbjct:   413 SRLELYGKEIAINDEWLNITKGLMKSTLSSINISKNNSLTDQGIASLSSLAKLSSLDISY 472

Query:   125 CVKVTDAGMKHLLSIST-LEKLWLS-ETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVL 181
             C K+   G++ L+     L+KL +   + L    +   LS L+ L+ L +G   +TD + 
Sbjct:   473 CEKIDGTGLEPLVDAGVPLQKLHMEGNSSLNLVKVFNSLSKLKTLNSLCVGNTNITDDMC 532

Query:   182 RSLQVLTKLEYLDLW-GSQVSNRGAAVLKMFPRLSFLNLAWT------GVTKLPNISSLE 234
             + L +LT L +LD+   +Q+ N+G   +     L  L+++        G+  L ++S+L+
Sbjct:   533 KPLSLLTTLTHLDVARNTQLGNQGLESISKCVNLIDLDISCCTKINALGIRHLGSLSNLQ 592

Query:   235 CLNLSNCTIDS-ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS------ 287
              L+  NC ID   ++       L+ +SL    F ++  A      +LL+ LD+S      
Sbjct:   593 SLSAENCAIDDESMKYIGTLKSLSSLSLINNPF-SDTGAKNIGNLTLLTTLDLSMCANIT 651

Query:   288 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
             +++L  F  LTQ+  L +L+   ++       +   +G  L+ L +
Sbjct:   652 DAALVHFKNLTQISKL-NLNFCGNLTDSGVTSLTGGLG-QLKTLGI 695

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 77/291 (26%), Positives = 134/291 (46%)

Query:   115 TCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDL-- 171
             T L+ LD  R  + +T  G   +  +  L +L LS   LT+    L  +L +L  LDL  
Sbjct:   332 TSLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALTSLPYCL-GNLTHLRTLDLSN 390

Query:   172 ----GGLP--VTDL--VLRSLQVL-TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222
                 G L   V+ L  VL  L +L    +   L+ S V+     V K+  ++  + +  T
Sbjct:   391 NQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQ-T 449

Query:   223 GVTKLPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLL 281
               +  P +  L+ L LSNC++ S + G   ++  L  + L+          +L    + L
Sbjct:   450 ESSWAP-LFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRL 508

Query:   282 SFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341
               + +S +SL++      +  L+ LD+SS+MI D   E +  V  NLR +N S+  F   
Sbjct:   509 QTILLSGNSLTKLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGT 568

Query:   342 GVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFIDISNTDIKGFI 391
              +    G + +L++L +S   +     I ++S   SL+ + +SN  ++G I
Sbjct:   569 -IPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKI 618

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

ZFIN|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 86/322 (26%), Positives = 151/322 (46%)

Query:    92 LRSLNVADCRRVTSSALWA--LTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLS 148
             + SLN++ C  +T + L    +  +  L+ L+LS C ++TD+ +  +   +  LE L L 
Sbjct:    92 IESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLCKQITDSSLGRIAQYLKNLELLDLG 151

Query:   149 E-TGLTADGIALLS-SLQNLSVLDLGGLP-VTDLVLRSLQVLTK--------LEYLDLWG 197
               + +T  G+ L++  L NL  L+L     V+D+ +  L  +T+        LE+L L  
Sbjct:   152 GCSNITNTGLLLIAWGLHNLKSLNLRSCRHVSDVGIGHLAGMTRSAAEGCLTLEHLTLQD 211

Query:   198 SQ-VSNRGAA-VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP 255
              Q +++     + K   +L  LNL++ G      IS    ++LS+ T    L    N   
Sbjct:   212 CQKLTDLSLKHISKGLNKLKVLNLSFCG-----GISDAGMIHLSHMTQLWTL----NLRS 262

Query:   256 LAKISLAGTTFINEREAFLYIETSL-LSFLD-VSNSSLSRFCFLTQ-MKALEHLDLSSSM 312
                IS  G   ++     LY    L +SF D V + SL+   ++ Q +  L+ L L S  
Sbjct:   263 CDNISDTGIMHLSMGALRLY---GLDVSFCDKVGDQSLA---YIAQGLYQLKSLSLCSCH 316

Query:   313 IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISY 370
             I DD +  +      L+ LN+    R +  G+ ++A HL  L  + L G T+I    +  
Sbjct:   317 ISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIADHLTQLTGIDLYGCTKITKRGLER 376

Query:   371 MSMMPSLKFIDIS---NTDIKG 389
             ++ +P LK +++     T++KG
Sbjct:   377 ITQLPCLKVLNLGLWQMTEVKG 398

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IC

UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]

 Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 85/319 (26%), Positives = 152/319 (47%)

Query:    66 NAEAIELRG-ENSVD-AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDL 122
             N E++ L G  N  D     A++     LR+LN++ C+++T S+L  +   +  L+ L+L
Sbjct:    91 NIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLEL 150

Query:   123 SRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLV 180
               C  +T+ G+  +   +  L+ L L      +D GI  L+ +   S  + G L +  L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR-SAAE-GCLGLEQLT 208

Query:   181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN-LAWTGVTKLPNISSLECLNLS 239
             L+  Q LT     DL    +S RG   L++   LSF   ++  G+  L ++ SL  LNL 
Sbjct:   209 LQDCQKLT-----DLSLKHIS-RGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSLNLR 261

Query:   240 NCTIDSILEGNENKAPLAKISLAG--TTFINE--REAFLYIETSL-----LSFLD--VSN 288
             +C  D+I +       +  + L+G   +F ++   ++  YI   L     LS     +S+
Sbjct:   262 SC--DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query:   289 SSLSRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGIL 346
               ++R   + QM  L  L++   + I D  +E++A   + L  ++L   TR +  G+  +
Sbjct:   320 DGINRM--VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERI 377

Query:   347 AGHLPNLEILSLSGTQIDD 365
                LP L++L+L   Q+ D
Sbjct:   378 T-QLPCLKVLNLGLWQMTD 395

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 85/319 (26%), Positives = 152/319 (47%)

Query:    66 NAEAIELRG-ENSVD-AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDL 122
             N E++ L G  N  D     A++     LR+LN++ C+++T S+L  +   +  L+ L+L
Sbjct:    91 NIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLEL 150

Query:   123 SRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLV 180
               C  +T+ G+  +   +  L+ L L      +D GI  L+ +   S  + G L +  L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR-SAAE-GCLGLEQLT 208

Query:   181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN-LAWTGVTKLPNISSLECLNLS 239
             L+  Q LT     DL    +S RG   L++   LSF   ++  G+  L ++ SL  LNL 
Sbjct:   209 LQDCQKLT-----DLSLKHIS-RGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSLNLR 261

Query:   240 NCTIDSILEGNENKAPLAKISLAG--TTFINE--REAFLYIETSL-----LSFLD--VSN 288
             +C  D+I +       +  + L+G   +F ++   ++  YI   L     LS     +S+
Sbjct:   262 SC--DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query:   289 SSLSRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGIL 346
               ++R   + QM  L  L++   + I D  +E++A   + L  ++L   TR +  G+  +
Sbjct:   320 DGINRM--VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERI 377

Query:   347 AGHLPNLEILSLSGTQIDD 365
                LP L++L+L   Q+ D
Sbjct:   378 T-QLPCLKVLNLGLWQMTD 395

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

RGD|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 85/319 (26%), Positives = 152/319 (47%)

Query:    66 NAEAIELRG-ENSVD-AEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDL 122
             N E++ L G  N  D     A++     LR+LN++ C+++T S+L  +   +  L+ L+L
Sbjct:    91 NIESLNLSGCYNLTDNGLGHAFVQEIGSLRALNLSLCKQITDSSLGRIAQYLKGLEVLEL 150

Query:   123 SRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLV 180
               C  +T+ G+  +   +  L+ L L      +D GI  L+ +   S  + G L +  L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTR-SAAE-GCLGLEQLT 208

Query:   181 LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN-LAWTGVTKLPNISSLECLNLS 239
             L+  Q LT     DL    +S RG   L++   LSF   ++  G+  L ++ SL  LNL 
Sbjct:   209 LQDCQKLT-----DLSLKHIS-RGLTGLRLL-NLSFCGGISDAGLLHLSHMGSLRSLNLR 261

Query:   240 NCTIDSILEGNENKAPLAKISLAG--TTFINE--REAFLYIETSL-----LSFLD--VSN 288
             +C  D+I +       +  + L+G   +F ++   ++  YI   L     LS     +S+
Sbjct:   262 SC--DNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD 319

Query:   289 SSLSRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGIL 346
               ++R   + QM  L  L++   + I D  +E++A   + L  ++L   TR +  G+  +
Sbjct:   320 DGINRM--VRQMHGLRTLNIGQCVRITDKGLELIAEHLSQLTGIDLYGCTRITKRGLERI 377

Query:   347 AGHLPNLEILSLSGTQIDD 365
                LP L++L+L   Q+ D
Sbjct:   378 T-QLPCLKVLNLGLWQMTD 395

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00006759001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (629 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00001958001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (353 aa)							•		0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	619
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 102/425 (24%), Positives = 160/425 (37%), Gaps = 80/425 (18%)

Query: 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 197
           SI  LE L LS   L+ +    + S  +L VLDLGG  +   +  SL  LT LE+L L  
Sbjct: 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVT-KLPN----ISSLECLNLS-NCTIDSILEGNE 251
           +Q+  +    L     L ++ L +  ++ ++P     ++SL  L+L  N     I     
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLS 309
           N   L  + L            ++    L+S LD+S++SLS      + Q++ LE L L 
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS-LDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSA----------------GVGILAGHLP-- 351
           S+         +  +   L+ L L + +FS                      L G +P  
Sbjct: 317 SNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 352 -----NLEILSLSGTQIDDYAISYMSMMPSLK------------------------FIDI 382
                NL  L L    ++      +    SL+                        F+DI
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 383 SNTDIKGFIQQVGAETDLVLSLTALQNLN-----------------HLERLNLEQTQVSD 425
           SN +++G I     +      + +LQ L+                  LE L+L + Q S 
Sbjct: 436 SNNNLQGRINSRKWD------MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489

Query: 426 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485
           A    L +  EL+ L L    L+     +LSS  KL +L +    L+     SF     L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 486 KLLDL 490
             LDL
Sbjct: 550 SQLDL 554

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 49/269 (18%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTD--AGMKHLLSISTLEKLWLSE 149
           L         R   S L  LT    L+ELDLS      D    ++ LL  S+L++L L+ 
Sbjct: 58  LSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN 117

Query: 150 TGLTADGI-----ALLSSLQNLSVLDLGGLPVTDLVLRS----LQVLTKLEYLDLWGSQV 200
            GL   G+      L      L  L LG   +      +    L+    L+ L+L  + +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 201 SNRGAAVL----KMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTIDSIL 247
            + G   L    K    L  L+L   G+T          L ++ SLE LNL +  +    
Sbjct: 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-- 235

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR-----FC-FLTQMK 301
                 A  A ++           A L    SLL+ L +S + ++          L + +
Sbjct: 236 ------AGAAALA----------SALLSPNISLLT-LSLSCNDITDDGAKDLAEVLAEKE 278

Query: 302 ALEHLDLSSSMIGDDSVEMVACVGANLRN 330
           +L  LDL  +  G++  +++A       N
Sbjct: 279 SLLELDLRGNKFGEEGAQLLAESLLEPGN 307

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 16/173 (9%)

Query: 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNL-SNTRFSSAGVGILAGHLPNLEILSLS 359
             LE L+L    I D  ++ ++     L+ L L  +      G+  LA   PNL++L L 
Sbjct: 28  SGLEWLELYMCPISDPPLDQLSN-CNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLR 86

Query: 360 G-TQIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL-QNLNHLERL 416
               I D  I  ++   P L+ I++        I      TD+  SL+AL +N   L+ +
Sbjct: 87  ACENITDSGIVALATNCPKLQTINLGRHRNGHLI------TDV--SLSALGKNCTFLQTV 138

Query: 417 NLEQTQVSDATLFPLSTF--KELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSI 466
                 V+D  ++ L++   K L  LSL N   LTD S+  + + +   NLS+
Sbjct: 139 GFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSV 191

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 58/255 (22%), Positives = 100/255 (39%), Gaps = 21/255 (8%)

Query: 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF---INEREAFLYIETSLLSF 283
           L  + SL+ L+ S  +     E   N  PL  + L        I+E      + +  L  
Sbjct: 66  LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTS--LDL 123

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
            + + + +     L +   L+ LDLS + I      +      NL+NL+LS    S    
Sbjct: 124 DNNNITDIPPLIGLLKSN-LKELDLSDNKIESLPSPLRNL--PNLKNLDLSFNDLSDLPK 180

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL- 402
             L  +L NL  L LSG +I D     + ++ +L+ +D+SN  I   +  +    +L   
Sbjct: 181 --LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGL 237

Query: 403 ---------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH 453
                       ++ NL++LE L+L   Q+S  +     T    + LS  + S     + 
Sbjct: 238 ELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIA 297

Query: 454 QLSSLSKLTNLSIRD 468
            L  L +L    +  
Sbjct: 298 LLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 68/250 (27%), Positives = 117/250 (46%), Gaps = 34/250 (13%)

Query: 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETS 279
           W G+T   N S +  ++LS   I   +     + P +  I+L+           ++  +S
Sbjct: 60  WQGIT-CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118

Query: 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339
            L +L++SN++ +       +  LE LDLS++M+   S E+   +G+       S+ +  
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML---SGEIPNDIGS------FSSLKVL 169

Query: 340 SAGVGILAGHLPN-------LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI- 391
             G  +L G +PN       LE L+L+  Q+       +  M SLK+I +   ++ G I 
Sbjct: 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229

Query: 392 QQVGAET-----DLVLS-LT-----ALQNLNHLERLNLEQTQVSDATLFPLSTF--KELI 438
            ++G  T     DLV + LT     +L NL +L+ L L Q ++S     P S F  ++LI
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLI 287

Query: 439 HLSLRNASLT 448
            L L + SL+
Sbjct: 288 SLDLSDNSLS 297

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 81/310 (26%), Positives = 132/310 (42%), Gaps = 27/310 (8%)

Query: 127 KVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV 186
           K++      + S+  L  L LS+  L+ +   L+  LQNL +L L     T  +  +L  
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-KLPN--ISSLECLNL---SN 240
           L +L+ L LW ++ S      L     L+ L+L+   +T ++P    SS     L   SN
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 241 CTIDSILEGNENKAPLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CF 296
                I +       L ++ L   +F  E   E   + +  L+ FLD+SN++L       
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE---FTKLPLVYFLDISNNNLQGRINSR 447

Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEI 355
              M +L+ L L+ +        +    G+  L NL+LS  +FS A V    G L  L  
Sbjct: 448 KWDMPSLQMLSLARNKF---FGGLPDSFGSKRLENLDLSRNQFSGA-VPRKLGSLSELMQ 503

Query: 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE----TDLVLSLTAL---- 407
           L LS  ++       +S    L  +D+S+  + G I    +E    + L LS   L    
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 408 -QNLNHLERL 416
            +NL ++E L
Sbjct: 564 PKNLGNVESL 573

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 24/201 (11%)

Query: 275 YIETSLLSFLDVSNSSLS-----RFCFLTQMKALEHLDLSSSMIGDDSVEMVAC----VG 325
             +   L  LD+S+++L          L +  +L+ L L+++ +GD  + ++A     + 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 326 ANLRNLNLSNTRFSSAGVGILAG---HLPNLEILSLSGTQIDDYAISY----MSMMPSLK 378
             L  L L   R   A    LA       +L+ L+L+   I D  I      +    +L+
Sbjct: 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLE 196

Query: 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 438
            +D++N         +  E    L+ T     + LE LNL    ++DA    L++     
Sbjct: 197 VLDLNNN-------GLTDEGASALAETLASLKS-LEVLNLGDNNLTDAGAAALASALLSP 248

Query: 439 HLSLRNASLTDVSLHQLSSLS 459
           ++SL   SL+   +    +  
Sbjct: 249 NISLLTLSLSCNDITDDGAKD 269

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 40/172 (23%)

Query: 85  YLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
            L     L+ L +   + +    L AL      L+ LDL  C  +TD+G   +++++T  
Sbjct: 47  QLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSG---IVALAT-- 101

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLG----GLPVTDLVLRSL-QVLTKLEYLDLWGS 198
                             +   L  ++LG    G  +TD+ L +L +  T L+ +   G 
Sbjct: 102 ------------------NCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143

Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGN 250
            V+++G              LA      L  +S   C NL++ +I +IL  N
Sbjct: 144 DVTDKG-----------VWELASGCSKSLERLSLNNCRNLTDQSIPAILASN 184

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 10/237 (4%)

Query: 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLE 191
           G ++LL++  L  L L+   L ++   LL  L NL+ LDL    +TD+      + + L+
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSIL 247
            LDL  +++ +  + +  + P L  L+L++  ++ LP    N+S+L  L+LS   I  + 
Sbjct: 144 ELDLSDNKIESLPSPLRNL-PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307
              E  + L ++ L+  + I    + L    +L      +N        +  +  LE LD
Sbjct: 203 PEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           LS++ I   S         NLR L+LS    S+A   I    L    +L+L  T   
Sbjct: 262 LSNNQISSISSLGSL---TNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 18/166 (10%)

Query: 299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358
           ++  ++ ++LS++ +     + +    ++LR LNLSN  F+ +   I  G +PNLE L L
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS---IPRGSIPNLETLDL 147

Query: 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 418
           S   +     + +    SLK +D+    + G I              +L NL  LE L L
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP------------NSLTNLTSLEFLTL 195

Query: 419 EQTQVSDATLFPLSTFKEL--IHLSLRNAS-LTDVSLHQLSSLSKL 461
              Q+       L   K L  I+L   N S      +  L+SL+ L
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
           NL++L+LSN R +    G   G LPNL++L LSG  +   +    S +PSL+ +D+S  +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKG-LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 387 I 387
           +
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	619
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.43
PLN03150	623	hypothetical protein; Provisional	99.43
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.42
KOG4341	483	consensus F-box protein containing LRR [General fu	99.42
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.36
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
KOG4341	483	consensus F-box protein containing LRR [General fu	99.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
PLN03150	623	hypothetical protein; Provisional	98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.89
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.63
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.49
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.54
PRK15386	426	type III secretion protein GogB; Provisional	97.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.52
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.49
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.49
KOG4308	478	consensus LRR-containing protein [Function unknown	97.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.11
KOG4308	478	consensus LRR-containing protein [Function unknown	97.08
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.48
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.19
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.66
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.6
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.07
smart00370	26	LRR Leucine-rich repeats, outliers.	90.07
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.72
smart00370	26	LRR Leucine-rich repeats, outliers.	88.72
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	88.39
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.19
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	87.62
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.84
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	82.35
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	80.89
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.41
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	80.01

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.3e-47  Score=434.81  Aligned_cols=415  Identities=22%  Similarity=0.248  Sum_probs=245.3

Q ss_pred             CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcE
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK  144 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~  144 (619)
                      ++|++|+|++|. +.+..+..++.+++|++|+|++|. +....+..+.++++|++|++++| .+....+..++++++|++
T Consensus       140 ~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        140 PNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccE
Confidence            356666666665 444555556666666666666665 44444455666666666666666 444444555666666666


Q ss_pred             EEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCC
Q 007082          145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV  224 (619)
Q Consensus       145 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  224 (619)
                      |++++|.+.+..+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            66666666655555566666666666666666665666666666666666666666655666666666666666666655


Q ss_pred             CC-----CCCCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hh
Q 007082          225 TK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CF  296 (619)
Q Consensus       225 ~~-----l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~  296 (619)
                      ..     +.++++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+.  ..
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCChh
Confidence            42     224556666666666555 3344444566666666666655533222 223455566666666655432  33


Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      +..+++|+.|++++|.+.+..+..+..+ ++|+.|++++|++++..+..+ ..+++|+.|++++|.+++..+..+..+++
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  453 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPS  453 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCC-CCCCEEECcCCEeeeECChhH-hcCCCCCEEECcCCcccCccChhhccCCC
Confidence            4444555555555555554444444443 455555555555544433333 33455555555555554444444444444


Q ss_pred             -----------------------CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082          377 -----------------------LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST  433 (619)
Q Consensus       377 -----------------------L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  433 (619)
                                             |+.|++++|++++..|.            .+..+++|+.|++++|.+.+.+|..+..
T Consensus       454 L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  521 (968)
T PLN00113        454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR------------KLGSLSELMQLKLSENKLSGEIPDELSS  521 (968)
T ss_pred             CcEEECcCceeeeecCcccccccceEEECcCCccCCccCh------------hhhhhhccCEEECcCCcceeeCChHHcC
Confidence                                   55555555555544444            5666677777777777777777777777


Q ss_pred             CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      +++|++|+|++|.+++.+|..|..+++|+.|+|++|++++..|..+..+++|+.+++++|++.+
T Consensus       522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            7777777777777777777777777777777777777777777666667777777777777654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.8e-45  Score=416.10  Aligned_cols=434  Identities=22%  Similarity=0.224  Sum_probs=369.1

Q ss_pred             ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhh
Q 007082           56 FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH  135 (619)
Q Consensus        56 ~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~  135 (619)
                      +|..+....++|++|+|++|. +.+..+.  +.+++|++|+|++|. +....+..++++++|++|++++| .+....+..
T Consensus       109 ip~~~~~~l~~L~~L~Ls~n~-l~~~~p~--~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~  183 (968)
T PLN00113        109 IPDDIFTTSSSLRYLNLSNNN-FTGSIPR--GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNS  183 (968)
T ss_pred             CChHHhccCCCCCEEECcCCc-cccccCc--cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccC-cccccCChh
Confidence            343333246799999999998 5444443  468999999999987 66666777999999999999999 666667788


Q ss_pred             hcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCC
Q 007082          136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS  215 (619)
Q Consensus       136 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~  215 (619)
                      ++++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|+
T Consensus       184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            99999999999999999888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCC-----CCCCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCC
Q 007082          216 FLNLAWTGVTK-----LPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS  289 (619)
Q Consensus       216 ~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n  289 (619)
                      .|++++|.+..     +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSN  342 (968)
T ss_pred             EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCC
Confidence            99999998863     336899999999999988 5677777999999999999999865543 3557899999999999


Q ss_pred             Ccchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH
Q 007082          290 SLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  367 (619)
Q Consensus       290 ~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  367 (619)
                      .+.+.  ..+..+++|+.|++++|.+++..+..+... ++|+.|++++|.+.+..+..+ +.+++|+.|++++|.+++..
T Consensus       343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHH-hCCCCCCEEECcCCEeeeEC
Confidence            99764  567889999999999999988878777766 899999999999998877776 67999999999999999988


Q ss_pred             HHHhhCCCCCcEEEccCCccCcchhccccchh-----------hhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          368 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETD-----------LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       368 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      |..+..+++|+.|++++|++++.++.......           ....++.....++|+.|++++|++++..|..+..+++
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~  500 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE  500 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence            88899999999999999999887665111000           0001112233467788888888888888888888999


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      |+.|+|++|.+++.+|..+..+++|++|+|++|.+++..|..+..+++|+.|++++|++..
T Consensus       501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence            9999999999999889999999999999999999999999999999999999999999854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-43  Score=343.68  Aligned_cols=423  Identities=17%  Similarity=0.242  Sum_probs=303.8

Q ss_pred             CccEEeccCCCCCChHHHHHHhcC-CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhc-CCCCCc
Q 007082           66 NAEAIELRGENSVDAEWMAYLGAF-RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLL-SISTLE  143 (619)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~  143 (619)
                      ....||.++......++...-+-+ +.-+.|++++|+ +....+..|.++++|+++++.+| .++.  +..++ ...+|+
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N-~Lt~--IP~f~~~sghl~  128 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKN-ELTR--IPRFGHESGHLE  128 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccc-hhhh--ccccccccccee
Confidence            466777777662222222211222 356678888877 77777777888888888888888 4443  33444 345688


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC
Q 007082          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG  223 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  223 (619)
                      .|+|.+|.|+....+.++.++.|++|||+.|.++.+....|..-.++++|+|++|.|+......|.++.+|..|.|+.|+
T Consensus       129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR  208 (873)
T ss_pred             EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence            88888888888777888888888888888888887766677777788888888888887777777776666666666665


Q ss_pred             CCCCCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcC
Q 007082          224 VTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQM  300 (619)
Q Consensus       224 l~~l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~  300 (619)
                      ++.+|                   ...| .+++|+.|++..|.+.-. ....|.++++|+.|.+..|.+..+  ..|..+
T Consensus       209 ittLp-------------------~r~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l  268 (873)
T KOG4194|consen  209 ITTLP-------------------QRSFKRLPKLESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL  268 (873)
T ss_pred             ccccC-------------------HHHhhhcchhhhhhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence            55444                   3333 244444444444443322 223455666666666666666555  456667


Q ss_pred             CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  380 (619)
                      .++++|++..|++....-..+.++ ..|+.|++++|.|....+..+ .-+++|++|+|+.|+++...+..|..+..|++|
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL  346 (873)
T ss_pred             cccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchh-hhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence            777777777777766555555555 777777777777776666655 457777888888777777777777777778888


Q ss_pred             EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC---cccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082          381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT---LFPLSTFKELIHLSLRNASLTDVSLHQLSS  457 (619)
Q Consensus       381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  457 (619)
                      +|+.|.++..-..            +|.++++|++|||++|.++..+   ...|.++++|+.|+|.+|++..+.-..|++
T Consensus       347 nLs~Nsi~~l~e~------------af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg  414 (873)
T KOG4194|consen  347 NLSHNSIDHLAEG------------AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG  414 (873)
T ss_pred             cccccchHHHHhh------------HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence            8888877665555            6777788888888888776443   344677889999999999999888889999


Q ss_pred             CCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeeecccccccCCCCCC
Q 007082          458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIG  527 (619)
Q Consensus       458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (619)
                      +++|+.|||.+|.|..+-+.+|.++ .|+.|.+..-.+.|||.+.|+.+|+.+..........|..|+..
T Consensus       415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~L  483 (873)
T KOG4194|consen  415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPL  483 (873)
T ss_pred             CcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccc
Confidence            9999999999999999889999988 89999999999999999999999998777766666667666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-39  Score=315.48  Aligned_cols=365  Identities=21%  Similarity=0.295  Sum_probs=306.0

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhC-CCCCCEEeCCCCCCCChhhHhhhcCCCCC
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTL  142 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~~~~l~~l~~L  142 (619)
                      +...+.||+++|. +...-+..|.++++|+.+++..|. ++.  ++.++. ..+|+.|+|.+| .++...-+.+.-++.|
T Consensus        77 p~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~-Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   77 PSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNE-LTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELSALPAL  151 (873)
T ss_pred             ccceeeeeccccc-cccCcHHHHhcCCcceeeeeccch-hhh--cccccccccceeEEeeecc-ccccccHHHHHhHhhh
Confidence            3468899999998 666677789999999999999987 433  334554 457999999999 7887778888899999


Q ss_pred             cEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC
Q 007082          143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT  222 (619)
Q Consensus       143 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  222 (619)
                      |.|||+.|.++......|..-.++++|+|++|.|+......|.++.+|..|.|+.|.++...+..|.++++|+.|+|..|
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            99999999999887778888889999999999999998899999999999999999999999999999999999999999


Q ss_pred             CCCC-----CCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhh
Q 007082          223 GVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF  296 (619)
Q Consensus       223 ~l~~-----l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  296 (619)
                      +|..     +.++++|+.|.+..|.+..+.++.| .+.++++|+++.|++......                       +
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-----------------------~  288 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG-----------------------W  288 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc-----------------------c
Confidence            8874     4578888888888888888877766 666666666666666554443                       4


Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      +.+++.|+.|++++|.|....+..+... ++|++|+|++|+++......| ..+..|+.|+|++|.+.......|..+.+
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf-~~L~~Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSF-RVLSQLEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHH-HHHHHhhhhcccccchHHHHhhHHHHhhh
Confidence            5567888888888888887777777665 889999999988888877777 45888999999999998888888888999


Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      |+.|||++|.+++.+...         ...|.++++|+.|.+.+|++......+|.++++|++|||.+|.|..+-++.|+
T Consensus       367 L~~LdLr~N~ls~~IEDa---------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  367 LHKLDLRSNELSWCIEDA---------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             hhhhcCcCCeEEEEEecc---------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence            999999999988776552         12688899999999999999877778899999999999999999998888998


Q ss_pred             CCCCCCEEEcCC
Q 007082          457 SLSKLTNLSIRD  468 (619)
Q Consensus       457 ~l~~L~~L~L~~  468 (619)
                      .+ .|++|.+..
T Consensus       438 ~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  438 PM-ELKELVMNS  448 (873)
T ss_pred             cc-hhhhhhhcc
Confidence            88 888887654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=1.4e-33  Score=263.75  Aligned_cols=404  Identities=19%  Similarity=0.217  Sum_probs=275.4

Q ss_pred             CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEE
Q 007082           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL  145 (619)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L  145 (619)
                      .+++|++++|..  ...|.+++.+..++.|+.++|+ + ...++.+....+|+.|++++|. +. ..++.++.+..|+.+
T Consensus        69 ~l~vl~~~~n~l--~~lp~aig~l~~l~~l~vs~n~-l-s~lp~~i~s~~~l~~l~~s~n~-~~-el~~~i~~~~~l~dl  142 (565)
T KOG0472|consen   69 CLTVLNVHDNKL--SQLPAAIGELEALKSLNVSHNK-L-SELPEQIGSLISLVKLDCSSNE-LK-ELPDSIGRLLDLEDL  142 (565)
T ss_pred             ceeEEEeccchh--hhCCHHHHHHHHHHHhhcccch-H-hhccHHHhhhhhhhhhhccccc-ee-ecCchHHHHhhhhhh
Confidence            466777777652  2556666777777777777765 3 3345556667777777777773 22 234556666777777


Q ss_pred             EccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC
Q 007082          146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT  225 (619)
Q Consensus       146 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~  225 (619)
                      +..+|.+... |+.+..+.+|..+++.+|.+....+..+. ++.|++|+...|.+. ..|..++.+.+|..|++.+|++.
T Consensus       143 ~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  143 DATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR  219 (565)
T ss_pred             hccccccccC-chHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence            7777777654 44456666777777777777766555544 777888887777665 45667788888888888888776


Q ss_pred             CCC---CCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcC
Q 007082          226 KLP---NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQM  300 (619)
Q Consensus       226 ~l~---~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~  300 (619)
                      .+|   .|..|++++++.|++..+|+... .++++..|++..|++...|....  .+.+|.+||+++|.+++. ..++++
T Consensus       220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl  297 (565)
T KOG0472|consen  220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL  297 (565)
T ss_pred             cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc
Confidence            544   56667777777777777777666 77777777777777777776543  456777777777777777 556666


Q ss_pred             CCCCEEeCcCCCCChhHH-----------HHHHh-----------------------------cCCCCcEEEccCCCCCC
Q 007082          301 KALEHLDLSSSMIGDDSV-----------EMVAC-----------------------------VGANLRNLNLSNTRFSS  340 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~-----------~~~~~-----------------------------~~~~L~~L~L~~n~l~~  340 (619)
                       +|+.|.+.+|.+...--           ..+..                             ...+.+.|++++-+++.
T Consensus       298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~  376 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL  376 (565)
T ss_pred             -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence             77777777775421110           00000                             00345566666666666


Q ss_pred             chHHHHHh-cCCCCcEEEccCCCCChH-----------------------HHHHhhCCCCCcEEEccCCccCcchhcccc
Q 007082          341 AGVGILAG-HLPNLEILSLSGTQIDDY-----------------------AISYMSMMPSLKFIDISNTDIKGFIQQVGA  396 (619)
Q Consensus       341 ~~~~~~~~-~~~~L~~L~l~~n~l~~~-----------------------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~  396 (619)
                      .+.+.|-. .-.-....+++.|++...                       ++..++.+++|..|++++|.+.. +|.   
T Consensus       377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~---  452 (565)
T KOG0472|consen  377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPE---  452 (565)
T ss_pred             CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cch---
Confidence            54444321 111255666666665432                       34455667888888888777644 444   


Q ss_pred             chhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082          397 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  476 (619)
Q Consensus       397 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  476 (619)
                               .++.+-.|+.|+++.|.+. ..|..+..+..++.+-.++|++....++.+.++.+|+.|||.+|.+... |
T Consensus       453 ---------e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-P  521 (565)
T KOG0472|consen  453 ---------EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-P  521 (565)
T ss_pred             ---------hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-C
Confidence                     4667777888888888877 5677666666777777777888888888899999999999999999854 6


Q ss_pred             ccCCCCCCCcEEEcCCCccC
Q 007082          477 GSFKPPRSLKLLDLHGGWLL  496 (619)
Q Consensus       477 ~~~~~~~~L~~l~l~~n~~~  496 (619)
                      ..++++.+|++|+++||||.
T Consensus       522 p~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  522 PILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhccccceeEEEecCCccC
Confidence            67999999999999999995

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-31  Score=274.57  Aligned_cols=437  Identities=21%  Similarity=0.242  Sum_probs=321.1

Q ss_pred             HhccccccCchHHHH-HHHHHHHHhhcc---ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082           29 RQRRSLERLPAHLAD-SLLRHLIRRRLI---FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (619)
Q Consensus        29 ~~~~~l~~lp~~l~~-~~l~~L~~~~~~---~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  104 (619)
                      .+...++.||..+.. +.+.+|...+..   .|--+-.-+-+|+.||++.|.  ...+|..+..+++|+.|+++.|. +.
T Consensus         5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~--~~~fp~~it~l~~L~~ln~s~n~-i~   81 (1081)
T KOG0618|consen    5 ASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ--ISSFPIQITLLSHLRQLNLSRNY-IR   81 (1081)
T ss_pred             cccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccc--cccCCchhhhHHHHhhcccchhh-Hh
Confidence            345667777765544 334444443322   221111113459999999986  34666677788899999999875 54


Q ss_pred             hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCC-------------------C
Q 007082          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ-------------------N  165 (619)
Q Consensus       105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~-------------------~  165 (619)
                      .. +.+..++.+|++|.|.+|. + ...|..+..+.+|+.|++++|.+...+. .+..++                   .
T Consensus        82 ~v-p~s~~~~~~l~~lnL~~n~-l-~~lP~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~  157 (1081)
T KOG0618|consen   82 SV-PSSCSNMRNLQYLNLKNNR-L-QSLPASISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQRLGQTS  157 (1081)
T ss_pred             hC-chhhhhhhcchhheeccch-h-hcCchhHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhhhhcccc
Confidence            43 3567788999999999983 3 3457778888999999999987764321 111111                   2


Q ss_pred             CCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC--------------------
Q 007082          166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT--------------------  225 (619)
Q Consensus       166 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------------  225 (619)
                      .+.+++..|.+.+.++..+..+..  .|++..|.+..   ..+..+++|+.|....|++.                    
T Consensus       158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~  232 (1081)
T KOG0618|consen  158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT  232 (1081)
T ss_pred             chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce
Confidence            555666666666666555555554  58888887762   22344444444444444433                    


Q ss_pred             CC---CCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCC
Q 007082          226 KL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMK  301 (619)
Q Consensus       226 ~l---~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~  301 (619)
                      .+   +.-.+|+++++++|.+..+|+++..+++|+.+....|.+...+....  ...+|+.|.+.+|.+..+ +.....+
T Consensus       233 ~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~  310 (1081)
T KOG0618|consen  233 TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLK  310 (1081)
T ss_pred             eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccc
Confidence            22   12357889999999999999888899999999999999977776433  567888899999988888 4555689


Q ss_pred             CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 007082          302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID  381 (619)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  381 (619)
                      .|++|++..|.+...+...+......|..|+.+.|++....... ....+.|+.|.+.+|.+++.....+.++++|+.|+
T Consensus       311 sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~-e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  311 SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE-ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             eeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc-chhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            99999999999887666555444244788888888877653211 13467899999999999998877888999999999


Q ss_pred             ccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCC
Q 007082          382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  461 (619)
Q Consensus       382 L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  461 (619)
                      |++|++..+...            .+.++..|++|+||+|+++ .+|..+..++.|++|...+|.+...+  .+..++.|
T Consensus       390 LsyNrL~~fpas------------~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL  454 (1081)
T KOG0618|consen  390 LSYNRLNSFPAS------------KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQL  454 (1081)
T ss_pred             ecccccccCCHH------------HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcc
Confidence            999999776666            7899999999999999998 66799999999999999999998854  78889999


Q ss_pred             CEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082          462 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       462 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  495 (619)
                      +.+|++.|+++........+.++|++||++||.+
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            9999999999876555555669999999999986

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=9.6e-31  Score=257.51  Aligned_cols=358  Identities=21%  Similarity=0.237  Sum_probs=194.0

Q ss_pred             CCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCE
Q 007082           89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV  168 (619)
Q Consensus        89 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  168 (619)
                      +|-.+-.++++|..-.+..+.....+++++.|.|... .+ ...|+.++.+.+|++|.+.+|.+... -..+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L-~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KL-EQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hh-hhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHH
Confidence            4455666777766333555555666666666666665 22 23455566666666666666666543 233556666666


Q ss_pred             EEcCCCCCChh-HHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCcc
Q 007082          169 LDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCT  242 (619)
Q Consensus       169 L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~  242 (619)
                      +.+..|++... +|..+-.+..|..|||+.|++. ..|..+...+++-+|+|++|+|..+|     ++..|-.|+|++|.
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            66666654322 2444555666666666666665 34555666666666666666666655     34555566666666


Q ss_pred             ccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChhHHH
Q 007082          243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVE  319 (619)
Q Consensus       243 l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~  319 (619)
                      +..+|+.+..+..|++|.+++|.+....-. ....+++|+.|.+++.+-+-.   ..+..+.+|..+|++.|.++ ..|+
T Consensus       162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe  239 (1255)
T KOG0444|consen  162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLR-QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE  239 (1255)
T ss_pred             hhhcCHHHHHHhhhhhhhcCCChhhHHHHh-cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence            666666666666666666666654422111 011233444444444433222   34445555555666655554 2344


Q ss_pred             HHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc-hhccccch
Q 007082          320 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAET  398 (619)
Q Consensus       320 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~  398 (619)
                      .+..+ ++|+.|+|++|+|+......  +...+|++|+++.|+++. .|.++..++.|+.|.+.+|+++-. +|.     
T Consensus       240 cly~l-~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPS-----  310 (1255)
T KOG0444|consen  240 CLYKL-RNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPS-----  310 (1255)
T ss_pred             HHhhh-hhhheeccCcCceeeeeccH--HHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCcc-----
Confidence            44444 55556666666555532221  234455555666665554 234455555555555555554322 333     


Q ss_pred             hhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082          399 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       399 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                             .++.+..|+++..++|.+. ..|+.++.|..|+.|.|+.|.+-. .|+.+--++.|+.||+..|.
T Consensus       311 -------GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  311 -------GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             -------chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence                   4555555555555555554 555555555555555555555443 24455555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=2.5e-30  Score=254.59  Aligned_cols=356  Identities=18%  Similarity=0.242  Sum_probs=219.1

Q ss_pred             CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEE
Q 007082           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL  145 (619)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L  145 (619)
                      -++..|+++|..-.+.+|.....+++++-|.|...+ + ...+..++.|.+|+.|.+++|. +. .....+..++.|+.+
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L-~~vPeEL~~lqkLEHLs~~HN~-L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-L-EQVPEELSRLQKLEHLSMAHNQ-LI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhh-h-hhChHHHHHHhhhhhhhhhhhh-hH-hhhhhhccchhhHHH
Confidence            366677777763345666667777777777776644 2 2334556677777777777763 32 223445666777777


Q ss_pred             EccCCCCChhH-HHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCC
Q 007082          146 WLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV  224 (619)
Q Consensus       146 ~L~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  224 (619)
                      .+.+|.+...+ |..+-.+..|+.|+|++|++... |..+..-+++-.|+|++|+|..++...|.+++.|-.|+|++|++
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence            77776553322 33444666777777777776543 55666666777777777777666656666777777777777777


Q ss_pred             CCCC----CCCCCcEEEcCCcccccc-ccccCCCCCccEEeccCcccc--chhHHHhhhccCCCcEEeccCCCcchh-hh
Q 007082          225 TKLP----NISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFI--NEREAFLYIETSLLSFLDVSNSSLSRF-CF  296 (619)
Q Consensus       225 ~~l~----~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~  296 (619)
                      ..+|    .+..|++|.|++|.+... ...+..+.+|+.|.+++.+-+  .+|..  ...+.+|..+|++.|++..+ ..
T Consensus       163 e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp~vPec  240 (1255)
T KOG0444|consen  163 EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSENNLPIVPEC  240 (1255)
T ss_pred             hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccccCCCcchHH
Confidence            7665    456677777777765521 122224556666666665433  33332  23566677777777777666 45


Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCCh-HHHHHhhCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YAISYMSMMP  375 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~  375 (619)
                      +..+++|+.|++++|.++...... ... .+|++|+++.|+++.. |..+ ..+++|+.|.+.+|+++- -+|..++.+.
T Consensus       241 ly~l~~LrrLNLS~N~iteL~~~~-~~W-~~lEtLNlSrNQLt~L-P~av-cKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITELNMTE-GEW-ENLETLNLSRNQLTVL-PDAV-CKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             HhhhhhhheeccCcCceeeeeccH-HHH-hhhhhhccccchhccc-hHHH-hhhHHHHHHHhccCcccccCCccchhhhh
Confidence            666677777777777766543321 222 5677777777777665 3343 246677777777766442 1345566667


Q ss_pred             CCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC
Q 007082          376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS  446 (619)
Q Consensus       376 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  446 (619)
                      .|+.+..++|.+ ...|+            .+..|..|+.|.|++|.+- ..|+++.-++.|+.||+..|.
T Consensus       317 ~Levf~aanN~L-ElVPE------------glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  317 QLEVFHAANNKL-ELVPE------------GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhHHHHhhcccc-ccCch------------hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            777777766665 34555            5667777777777777665 456666667777777777764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=1.8e-31  Score=249.78  Aligned_cols=417  Identities=21%  Similarity=0.246  Sum_probs=280.4

Q ss_pred             HHHHHhccccccCchHHHHHHHHHHHHhhcc------ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcC
Q 007082           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVA   98 (619)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~------~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~   98 (619)
                      ..+..++..+..+|+.+.+  +..+......      +|..... ..++..|+.++|..  ...++.++++-.|..|+..
T Consensus        71 ~vl~~~~n~l~~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s-~~~l~~l~~s~n~~--~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   71 TVLNVHDNKLSQLPAAIGE--LEALKSLNVSHNKLSELPEQIGS-LISLVKLDCSSNEL--KELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             eEEEeccchhhhCCHHHHH--HHHHHHhhcccchHhhccHHHhh-hhhhhhhhccccce--eecCchHHHHhhhhhhhcc
Confidence            3445577788888888877  4444333322      3432222 23577788888762  3566667777788888888


Q ss_pred             CCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh
Q 007082           99 DCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD  178 (619)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~  178 (619)
                      +|+ ++ ..++++..+.+|..|++.+| .+....+..+. ++.|++||...|.++.. |+.++.+.+|+-|++..|++..
T Consensus       146 ~N~-i~-slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  146 NNQ-IS-SLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             ccc-cc-cCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhccccc
Confidence            776 43 34556677778888888887 55555555554 78888888888877654 5557888888888888888765


Q ss_pred             hHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC----CCCCCcEEEcCCccccccccccCCCC
Q 007082          179 LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKA  254 (619)
Q Consensus       179 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~~~l~~l~~~~~~~~  254 (619)
                      . | .|.+|..|++|.+..|.|..........++++..||+..|+++++|    -+.+|+.||+++|.++.+|..++++ 
T Consensus       221 l-P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-  297 (565)
T KOG0472|consen  221 L-P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-  297 (565)
T ss_pred             C-C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-
Confidence            4 3 7888888888888888887555555668888888888888888877    3677888888888888888888888 


Q ss_pred             CccEEeccCccccchhHHHhhh----------------------------------------ccCCCcEEeccCCCcchh
Q 007082          255 PLAKISLAGTTFINEREAFLYI----------------------------------------ETSLLSFLDVSNSSLSRF  294 (619)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~~~~----------------------------------------~~~~L~~L~l~~n~l~~~  294 (619)
                      +|+.|.+.||.+.++-......                                        ...+.+.|++++-.++.+
T Consensus       298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V  377 (565)
T KOG0472|consen  298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV  377 (565)
T ss_pred             eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC
Confidence            8888888888776543322110                                        011122333333333332


Q ss_pred             --hhhh--cCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082          295 --CFLT--QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  370 (619)
Q Consensus       295 --~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  370 (619)
                        ..|.  .-.-....++++|++.+. |..+..+-.-.+.+.+++|.++ ..+..+ ..+++|..|++++|-+.+.+ ..
T Consensus       378 PdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~is-fv~~~l-~~l~kLt~L~L~NN~Ln~LP-~e  453 (565)
T KOG0472|consen  378 PDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKIS-FVPLEL-SQLQKLTFLDLSNNLLNDLP-EE  453 (565)
T ss_pred             CHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccc-cchHHH-Hhhhcceeeecccchhhhcc-hh
Confidence              1111  111133444444444322 1111111011222333333333 223333 56899999999999887755 44


Q ss_pred             hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                      ++.+..|+.|+++.|+|.. .|.            .+..+..++.+-.++|++....+..+.++.+|..|||.+|.+..+
T Consensus       454 ~~~lv~Lq~LnlS~NrFr~-lP~------------~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I  520 (565)
T KOG0472|consen  454 MGSLVRLQTLNLSFNRFRM-LPE------------CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI  520 (565)
T ss_pred             hhhhhhhheeccccccccc-chH------------HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC
Confidence            6678889999999998854 454            455566677777788999977777799999999999999999885


Q ss_pred             hHHhhcCCCCCCEEEcCCCccC
Q 007082          451 SLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       451 ~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                       |..++++++|++|+++||+|.
T Consensus       521 -Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  521 -PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             -ChhhccccceeEEEecCCccC
Confidence             558899999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=5.7e-28  Score=248.87  Aligned_cols=431  Identities=19%  Similarity=0.223  Sum_probs=271.4

Q ss_pred             HHHHHHhccccccCchHHHHHHHHHHHHhhcc------ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEc
Q 007082           24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLI------FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV   97 (619)
Q Consensus        24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~------~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L   97 (619)
                      ++.++.++..+...|..++.  +.+|...+..      .|.... ...+++.|.|..|.  -...|..+..+.+|++|++
T Consensus        47 L~~l~lsnn~~~~fp~~it~--l~~L~~ln~s~n~i~~vp~s~~-~~~~l~~lnL~~n~--l~~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITL--LSHLRQLNLSRNYIRSVPSSCS-NMRNLQYLNLKNNR--LQSLPASISELKNLQYLDL  121 (1081)
T ss_pred             eEEeeccccccccCCchhhh--HHHHhhcccchhhHhhCchhhh-hhhcchhheeccch--hhcCchhHHhhhccccccc
Confidence            56667777888888877666  4443333221      121111 12345555555543  2344445555555555555


Q ss_pred             CCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCC
Q 007082           98 ADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVT  177 (619)
Q Consensus        98 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~  177 (619)
                      +.|+ +... +.-+..+..++.+..++|..     ...++.. .++.+++..+.+.+..+..+..+++  .|+|++|.+.
T Consensus       122 S~N~-f~~~-Pl~i~~lt~~~~~~~s~N~~-----~~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~  191 (1081)
T KOG0618|consen  122 SFNH-FGPI-PLVIEVLTAEEELAASNNEK-----IQRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME  191 (1081)
T ss_pred             chhc-cCCC-chhHHhhhHHHHHhhhcchh-----hhhhccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence            5554 2211 11233333333333333311     0111111 1444455544444444333333333  4666666554


Q ss_pred             hhHHHHhhcC--------------------CCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC----CCCCC
Q 007082          178 DLVLRSLQVL--------------------TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSL  233 (619)
Q Consensus       178 ~~~~~~~~~l--------------------~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~----~l~~L  233 (619)
                      ..   .+.++                    ++|+.|+.+.|.++...+  ...-.+|+++++++|.++.+|    .+.+|
T Consensus       192 ~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nl  266 (1081)
T KOG0618|consen  192 VL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANL  266 (1081)
T ss_pred             hh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccc
Confidence            21   12222                    344455555554442111  112357889999999888877    57899


Q ss_pred             cEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhh--hhhcCCC-CCEEeCcC
Q 007082          234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKA-LEHLDLSS  310 (619)
Q Consensus       234 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~-L~~L~l~~  310 (619)
                      +.++..+|.+.++|..++...+|+.|.+..|.+..+++..  .+.+.|++|++..|.+..++  .+..... ++.|..+.
T Consensus       267 e~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l--e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~  344 (1081)
T KOG0618|consen  267 EALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL--EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS  344 (1081)
T ss_pred             eEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc--cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh
Confidence            9999999999999999999999999999999888887743  35788999999999888773  3333333 66777777


Q ss_pred             CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc
Q 007082          311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  390 (619)
Q Consensus       311 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~  390 (619)
                      |.+....-..-... +.|+.|.+.+|.+++.....+ .++..|+.|+|++|++...+...+.+++.|++|+||+|+++..
T Consensus       345 n~l~~lp~~~e~~~-~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L  422 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNH-AALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL  422 (1081)
T ss_pred             ccccccccccchhh-HHHHHHHHhcCcccccchhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh
Confidence            76654332111112 678888899999988766666 5688999999999988888878888889999999999988754


Q ss_pred             hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082          391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                      . .            .+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++......-...++|++||++||.
T Consensus       423 p-~------------tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  423 P-D------------TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             h-H------------HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            4 4            6788888889988888887 455 77888899999999998877643333333789999999987


Q ss_pred             cCchhhccCCCCCCCcEEEcCCC
Q 007082          471 LTNSGLGSFKPPRSLKLLDLHGG  493 (619)
Q Consensus       471 l~~~~~~~~~~~~~L~~l~l~~n  493 (619)
                      -.......|..+..+...++.-|
T Consensus       488 ~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  488 RLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccccchhhhHHhhhhhheecccC
Confidence            44444445555666666666655

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=1.6e-26  Score=216.41  Aligned_cols=428  Identities=18%  Similarity=0.139  Sum_probs=252.4

Q ss_pred             HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (619)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  104 (619)
                      ..++|+..++..||.++|+                      ..+.+.|..|. |+..-+.+|+.+++||.|||++|. |+
T Consensus        49 ~~VdCr~~GL~eVP~~LP~----------------------~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~-Is  104 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPP----------------------ETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNN-IS  104 (498)
T ss_pred             ceEEccCCCcccCcccCCC----------------------cceEEEeccCC-cccCChhhccchhhhceecccccc-hh
Confidence            4678899999999999988                      68999999998 888888899999999999999987 99


Q ss_pred             hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHh
Q 007082          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL  184 (619)
Q Consensus       105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  184 (619)
                      .+.+.+|.++++|..|.+.++..+++..-..|+++..|+.|.+.-|.+.-...++|..+++|..|.+..|.+..+.-..|
T Consensus       105 ~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf  184 (498)
T KOG4237|consen  105 FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF  184 (498)
T ss_pred             hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence            99999999999999998888658888888888899999999888888888888889999999999998888776655577


Q ss_pred             hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCC--CccEEecc
Q 007082          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKA--PLAKISLA  262 (619)
Q Consensus       185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~--~L~~L~l~  262 (619)
                      ..+..++.+.+..|.+-.     ..+++.+.... .-+.+ ..+...-.....+.+..+..+.+.-+.+.  .+.+-..+
T Consensus       185 ~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~  257 (498)
T KOG4237|consen  185 QGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS  257 (498)
T ss_pred             cchhccchHhhhcCcccc-----ccccchhhhHH-hhchh-hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence            888888888887765211     01111111000 00000 00001111111122222222222222111  11111112


Q ss_pred             CccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCC
Q 007082          263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS  340 (619)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  340 (619)
                      .+....+-+...|..+++|+.|++++|.++.+  .+|.....+++|.+..|++....-..|..+ ..|+.|+|.+|+|+.
T Consensus       258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~l-s~L~tL~L~~N~it~  336 (498)
T KOG4237|consen  258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGL-SGLKTLSLYDNQITT  336 (498)
T ss_pred             ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcc-ccceeeeecCCeeEE
Confidence            22222333334455666666666666666555  456666666666666666665555555555 666666666666666


Q ss_pred             chHHHHHhcCCCCcEEEccCCCCChH-----HHHHh-----------hCCCCCcEEEccCCccCcchhccccchhhhh-h
Q 007082          341 AGVGILAGHLPNLEILSLSGTQIDDY-----AISYM-----------SMMPSLKFIDISNTDIKGFIQQVGAETDLVL-S  403 (619)
Q Consensus       341 ~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~-----------~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~-~  403 (619)
                      ..+..| ....+|.+|++-.|.+.-.     ..+++           +....++.+.+++..+...--. +.++..+. .
T Consensus       337 ~~~~aF-~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~-~~ee~~~~~s  414 (498)
T KOG4237|consen  337 VAPGAF-QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG-GPEELGCLTS  414 (498)
T ss_pred             Eecccc-cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC-CccccCCCCC
Confidence            555544 4455666666655543310     00111           1122445555555444322111 00000000 0


Q ss_pred             HHhhccCCcCCEE-EccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCC
Q 007082          404 LTALQNLNHLERL-NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP  482 (619)
Q Consensus       404 ~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  482 (619)
                      -+.-..++-+.+. ..++..+. .+|..+  .....+|++.+|.++.++..   .+.+| .+|+++|+++...-..|.++
T Consensus       415 ~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~  487 (498)
T KOG4237|consen  415 SPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNM  487 (498)
T ss_pred             CCCCCCcchhhhhHhhcccchh-hcCCCC--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccch
Confidence            0001112222222 22222222 333322  23456778888888775544   45667 78888888877766777777


Q ss_pred             CCCcEEEcCCC
Q 007082          483 RSLKLLDLHGG  493 (619)
Q Consensus       483 ~~L~~l~l~~n  493 (619)
                      .++..+-++.|
T Consensus       488 tql~tlilsyn  498 (498)
T KOG4237|consen  488 TQLSTLILSYN  498 (498)
T ss_pred             hhhheeEEecC
Confidence            77777777665

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-24  Score=203.76  Aligned_cols=107  Identities=23%  Similarity=0.233  Sum_probs=101.7

Q ss_pred             hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  485 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  485 (619)
                      .|..+++|++|+|++|++++.-+.+|.+...+++|.|..|++..+...+|.++..|+.|+|.+|+|+...|..|....+|
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            69999999999999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             cEEEcCCCccCCHHHHHHHHHhCCCee
Q 007082          486 KLLDLHGGWLLTEDAILQFCKMHPRIE  512 (619)
Q Consensus       486 ~~l~l~~n~~~~~~~~~~~~~~~~~~~  512 (619)
                      ..|++-+|||.|+|-+.|+.+|+..-.
T Consensus       349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  349 STLNLLSNPFNCNCRLAWLGEWLRKKS  375 (498)
T ss_pred             eeeehccCcccCccchHHHHHHHhhCC
Confidence            999999999999999999999986443

>PLN03210 Resistant to P

Probab=99.85  E-value=1.6e-20  Score=216.30  Aligned_cols=153  Identities=22%  Similarity=0.204  Sum_probs=71.7

Q ss_pred             HHHhcCCCccEEEcCCCCC-----CChHHHHHhhCCC-CCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHH
Q 007082           84 AYLGAFRYLRSLNVADCRR-----VTSSALWALTGMT-CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGI  157 (619)
Q Consensus        84 ~~~~~~~~L~~L~L~~~~~-----~~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~  157 (619)
                      ..|.++++|+.|.+..+..     +....+..+..++ +|+.|.+.++. +. ..|..+ ...+|++|++.++.+... +
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~-~lP~~f-~~~~L~~L~L~~s~l~~L-~  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LR-CMPSNF-RPENLVKLQMQGSKLEKL-W  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CC-CCCCcC-CccCCcEEECcCcccccc-c
Confidence            3456666666666643320     0111122233332 46666665552 22 122222 345566666666555432 2


Q ss_pred             HHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC-CCCCCC---CCCCC
Q 007082          158 ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTKLP---NISSL  233 (619)
Q Consensus       158 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~l~---~l~~L  233 (619)
                      ..+..+++|+.|+|+++......| .+..+++|++|++++|......|..+..+++|+.|++++| .+..+|   ++++|
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL  706 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL  706 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence            334455666666665544222222 2455566666666555433444555555555555555553 233333   23444


Q ss_pred             cEEEcCCc
Q 007082          234 ECLNLSNC  241 (619)
Q Consensus       234 ~~L~l~~~  241 (619)
                      +.|++++|
T Consensus       707 ~~L~Lsgc  714 (1153)
T PLN03210        707 YRLNLSGC  714 (1153)
T ss_pred             CEEeCCCC
Confidence            44444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.84  E-value=7.7e-20  Score=210.58  Aligned_cols=335  Identities=17%  Similarity=0.145  Sum_probs=242.0

Q ss_pred             hHhhhcCCCCCcEEEccCCCC------ChhHHHHhhcCC-CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchh
Q 007082          132 GMKHLLSISTLEKLWLSETGL------TADGIALLSSLQ-NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG  204 (619)
Q Consensus       132 ~~~~l~~l~~L~~L~L~~~~~------~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  204 (619)
                      ...+|.++++|+.|.+..+..      ....+..|..++ +|+.|++.++.+... |..| ...+|++|++.++.+.. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-~~~~L~~L~L~~s~l~~-L  626 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-RPENLVKLQMQGSKLEK-L  626 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-CccCCcEEECcCccccc-c
Confidence            345677888999888865532      112234455553 688999888876543 4555 46889999999988764 4


Q ss_pred             hHhhcCCCCCCEEecCCCC-CCCCC---CCCCCcEEEcCCcc-ccccccccCCCCCccEEeccCcc-ccchhHHHhhhcc
Q 007082          205 AAVLKMFPRLSFLNLAWTG-VTKLP---NISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTT-FINEREAFLYIET  278 (619)
Q Consensus       205 ~~~~~~~~~L~~L~l~~n~-l~~l~---~l~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~  278 (619)
                      +..+..+++|+.|+++++. +..++   .+++|++|++++|. +..+|..+..+++|+.|++++|. +..+|...   .+
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l  703 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NL  703 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CC
Confidence            5567788999999998763 44444   57889999998874 56788888888999999999875 44444322   67


Q ss_pred             CCCcEEeccCCCcc-hhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCC-------CchHHHHHhcC
Q 007082          279 SLLSFLDVSNSSLS-RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS-------SAGVGILAGHL  350 (619)
Q Consensus       279 ~~L~~L~l~~n~l~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~~~  350 (619)
                      ++|+.|++++|... .++.  ...+|+.|++++|.+...+ ..+ .+ ++|++|.+.++...       ...+ .....+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~lP-~~~-~l-~~L~~L~l~~~~~~~l~~~~~~l~~-~~~~~~  777 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEEFP-SNL-RL-ENLDELILCEMKSEKLWERVQPLTP-LMTMLS  777 (1153)
T ss_pred             CCCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccccc-ccc-cc-cccccccccccchhhccccccccch-hhhhcc
Confidence            88999999888542 2222  2468899999988876432 222 23 78888888764321       1111 112346


Q ss_pred             CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082          351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  430 (619)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  430 (619)
                      ++|+.|++++|......|..++++++|+.|++++|...+.+|.            .. ++++|+.|++++|.....+|..
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~~-~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------GI-NLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------CC-CccccCEEECCCCCcccccccc
Confidence            7999999999987777788899999999999999876666665            33 6889999999998544444432


Q ss_pred             ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc-cCchhhccCCCCCCCcEEEcCCCccC
Q 007082          431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLL  496 (619)
Q Consensus       431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~  496 (619)
                         ..+|+.|+|++|.++. +|..+..+++|+.|+|++|+ +.. ++.....++.|+.+++++|+-.
T Consensus       845 ---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        845 ---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             ---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCccc
Confidence               4689999999999987 56788999999999999954 554 5556777899999999998643

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=1.6e-20  Score=200.53  Aligned_cols=262  Identities=18%  Similarity=0.190  Sum_probs=133.7

Q ss_pred             CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC-CCCCcEEEcCCccc
Q 007082          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTI  243 (619)
Q Consensus       165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~~l  243 (619)
                      .-..|+++.+.++. +|..+.  ++|+.|++.+|+++.. |.   ..++|++|++++|+++.+|. .++|+.|++++|.+
T Consensus       202 ~~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        202 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             CCcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccCcccccceeeccCCch
Confidence            34556666665553 233332  2566666666655532 21   23556666666666655543 24566666666665


Q ss_pred             cccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHh
Q 007082          244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC  323 (619)
Q Consensus       244 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  323 (619)
                      ..+|..   ..+|+.|++++|.+..++..     .++|+.|++++|.++.++.+  ..+|+.|++++|.+++.+ .    
T Consensus       275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~-----p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP-~----  339 (788)
T PRK15387        275 THLPAL---PSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLP-T----  339 (788)
T ss_pred             hhhhhc---hhhcCEEECcCCcccccccc-----ccccceeECCCCccccCCCC--cccccccccccCcccccc-c----
Confidence            555442   23455566666655554431     24556666666655554321  234555566666555322 1    


Q ss_pred             cCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhh
Q 007082          324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS  403 (619)
Q Consensus       324 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~  403 (619)
                      ...+|+.|++++|+++..+.     ..++|+.|++++|+++..+ .   ...+|+.|++++|++++. |.          
T Consensus       340 lp~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~L-P~----------  399 (788)
T PRK15387        340 LPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV----------  399 (788)
T ss_pred             cccccceEecCCCccCCCCC-----CCcccceehhhccccccCc-c---cccccceEEecCCcccCC-CC----------
Confidence            11356666666666555321     1345555666666655422 1   123556666666665532 22          


Q ss_pred             HHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhcc
Q 007082          404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS  478 (619)
Q Consensus       404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  478 (619)
                        .   .++|+.|++++|++++ +|..   ..+|+.|++++|+++. +|..+..+++|+.|+|++|++++..+..
T Consensus       400 --l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        400 --L---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             --c---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHH
Confidence              1   1345566666666553 3322   2345556666666654 3445555666666666666666554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=2e-20  Score=199.68  Aligned_cols=266  Identities=20%  Similarity=0.215  Sum_probs=199.7

Q ss_pred             CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEec
Q 007082          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL  219 (619)
Q Consensus       140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  219 (619)
                      ..-..|+++++.++..+. .+.  ++|+.|++.+|+++.. |.   ..++|++|++++|+++.. |.   ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            456678888888775433 332  3688888888887754 22   257888888888888754 32   2467888888


Q ss_pred             CCCCCCCCCCC-CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhh
Q 007082          220 AWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLT  298 (619)
Q Consensus       220 ~~n~l~~l~~l-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  298 (619)
                      .+|.+..++.+ ++|+.|++++|.++.+|..   .++|+.|++++|.+..++..     ...|+.|++++|.++.++.+ 
T Consensus       270 s~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-----p~~L~~L~Ls~N~L~~LP~l-  340 (788)
T PRK15387        270 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-----PSELCKLWAYNNQLTSLPTL-  340 (788)
T ss_pred             cCCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-----cccccccccccCcccccccc-
Confidence            88888877643 5688888888888877753   46788888888888876542     24688888888888876532 


Q ss_pred             cCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCc
Q 007082          299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (619)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  378 (619)
                       ..+|++|++++|.+++.+.     ..++|+.|++++|.++..+ .    ..++|+.|++++|.+++.+.    ..++|+
T Consensus       341 -p~~Lq~LdLS~N~Ls~LP~-----lp~~L~~L~Ls~N~L~~LP-~----l~~~L~~LdLs~N~Lt~LP~----l~s~L~  405 (788)
T PRK15387        341 -PSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-A----LPSGLKELIVSGNRLTSLPV----LPSELK  405 (788)
T ss_pred             -ccccceEecCCCccCCCCC-----CCcccceehhhccccccCc-c----cccccceEEecCCcccCCCC----cccCCC
Confidence             2579999999999886432     1278899999999988753 2    24689999999999986442    246899


Q ss_pred             EEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082          379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS  457 (619)
Q Consensus       379 ~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  457 (619)
                      .|++++|++++ +|.            .   ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus       406 ~LdLS~N~Lss-IP~------------l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        406 ELMVSGNRLTS-LPM------------L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             EEEccCCcCCC-CCc------------c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            99999999976 343            1   246788999999998 67888999999999999999999988777643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=2.4e-18  Score=172.52  Aligned_cols=282  Identities=24%  Similarity=0.217  Sum_probs=137.2

Q ss_pred             EEEcCCCCCCC-hHHHHHhhCCCCCCEEeCCCCCCCChhhH----hhhcCCCCCcEEEccCCCCCh------hHHHHhhc
Q 007082           94 SLNVADCRRVT-SSALWALTGMTCLKELDLSRCVKVTDAGM----KHLLSISTLEKLWLSETGLTA------DGIALLSS  162 (619)
Q Consensus        94 ~L~L~~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~------~~~~~~~~  162 (619)
                      .|+|..+. ++ ......+..+++|++|++++| .+++...    ..+...+.|++++++++.+..      ..+..+..
T Consensus         2 ~l~L~~~~-l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGEL-LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCc-ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            35565554 33 333334556667888888877 4544322    223355667777777766551      12344556


Q ss_pred             CCCCCEEEcCCCCCChhHHHHhhcCCC---CCEEEccCCccCchhh----HhhcCCCCCCEEecCCCCCCCCCCCCCCcE
Q 007082          163 LQNLSVLDLGGLPVTDLVLRSLQVLTK---LEYLDLWGSQVSNRGA----AVLKMFPRLSFLNLAWTGVTKLPNISSLEC  235 (619)
Q Consensus       163 l~~L~~L~L~~n~~~~~~~~~~~~l~~---L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~  235 (619)
                      +++|+.|++++|.+.+..+..+..+.+   |++|++++|.+++...    ..+..+                  .++|+.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~------------------~~~L~~  141 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL------------------PPALEK  141 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC------------------CCCceE
Confidence            667777777776665544444443333   6666666666553211    122222                  033344


Q ss_pred             EEcCCcccc-----ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcC
Q 007082          236 LNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  310 (619)
Q Consensus       236 L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  310 (619)
                      |++++|.++     .+...+..+++|++|++++|.+.+.......                   ..+..+++|++|++++
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-------------------~~l~~~~~L~~L~L~~  202 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA-------------------EGLKANCNLEVLDLNN  202 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH-------------------HHHHhCCCCCEEeccC
Confidence            444444333     1222222333444444444443321100000                   1233345666666666


Q ss_pred             CCCChhHHHHHHhc---CCCCcEEEccCCCCCCchHHHHHhcC----CCCcEEEccCCCCChH----HHHHhhCCCCCcE
Q 007082          311 SMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGILAGHL----PNLEILSLSGTQIDDY----AISYMSMMPSLKF  379 (619)
Q Consensus       311 n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~  379 (619)
                      |.+++.....+...   +++|++|++++|.+++.....+...+    +.|++|++++|.+++.    ....+..+++|++
T Consensus       203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~  282 (319)
T cd00116         203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE  282 (319)
T ss_pred             CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence            66554443332211   14566666666666654444333322    5666666666666522    1233445566677


Q ss_pred             EEccCCccCcchhccccchhhhhhHHhhccC-CcCCEEEccCCC
Q 007082          380 IDISNTDIKGFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQ  422 (619)
Q Consensus       380 L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~  422 (619)
                      +++++|.+.......        ....+... +.|+++++.+|.
T Consensus       283 l~l~~N~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         283 LDLRGNKFGEEGAQL--------LAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             EECCCCCCcHHHHHH--------HHHHHhhcCCchhhcccCCCC
Confidence            777776665431110        00023333 566666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=9.7e-18  Score=168.17  Aligned_cols=278  Identities=26%  Similarity=0.269  Sum_probs=165.7

Q ss_pred             EEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHH----HhhCCCCCCEEeCCCCCCCC------hhhHhhhcC
Q 007082           69 AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVT------DAGMKHLLS  138 (619)
Q Consensus        69 ~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~----~l~~~~~L~~L~L~~~~~l~------~~~~~~l~~  138 (619)
                      .|+|..+..-...+...+..+++|+.|++++|. ++.....    .+...++|++|+++++. +.      ......+..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHh
Confidence            466766664446677777888888888888877 5444332    24466778888888873 33      122345567


Q ss_pred             CCCCcEEEccCCCCChhHHHHhhcCCC---CCEEEcCCCCCChh----HHHHhhcC-CCCCEEEccCCccCch----hhH
Q 007082          139 ISTLEKLWLSETGLTADGIALLSSLQN---LSVLDLGGLPVTDL----VLRSLQVL-TKLEYLDLWGSQVSNR----GAA  206 (619)
Q Consensus       139 l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~l~~n~i~~~----~~~  206 (619)
                      +++|+.|++++|.+....+..+..+.+   |++|++++|.+.+.    ....+..+ ++|++|++++|.+++.    ...
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            888888888888887655555554444   88999988887742    23344566 8889999988888743    233


Q ss_pred             hhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHH---HhhhccCCCcE
Q 007082          207 VLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---FLYIETSLLSF  283 (619)
Q Consensus       207 ~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~  283 (619)
                      .+..+++|++|++++|.++.-              .+..++..+...++|+.|++++|.+.+....   ..+..+++|++
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~--------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~  225 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDA--------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV  225 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchH--------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence            455666677777666665420              0001122222233444444444443322111   11234555666


Q ss_pred             EeccCCCcchh--h-hhh----cCCCCCEEeCcCCCCChhHHHHH----HhcCCCCcEEEccCCCCCCchHHHHH---hc
Q 007082          284 LDVSNSSLSRF--C-FLT----QMKALEHLDLSSSMIGDDSVEMV----ACVGANLRNLNLSNTRFSSAGVGILA---GH  349 (619)
Q Consensus       284 L~l~~n~l~~~--~-~~~----~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~---~~  349 (619)
                      |++++|.++..  . ...    ..+.|++|++++|.+++.....+    ... ++|+.+++++|.+++.....+.   ..
T Consensus       226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~~~~~~  304 (319)
T cd00116         226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLAESLLE  304 (319)
T ss_pred             EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHHHHHhh
Confidence            66666655532  1 111    23678888888888774433332    233 6788888888888765333221   22


Q ss_pred             C-CCCcEEEccCCCC
Q 007082          350 L-PNLEILSLSGTQI  363 (619)
Q Consensus       350 ~-~~L~~L~l~~n~l  363 (619)
                      . +.|+++++.+|.+
T Consensus       305 ~~~~~~~~~~~~~~~  319 (319)
T cd00116         305 PGNELESLWVKDDSF  319 (319)
T ss_pred             cCCchhhcccCCCCC
Confidence            3 5788888887754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=4.2e-18  Score=183.38  Aligned_cols=245  Identities=16%  Similarity=0.141  Sum_probs=123.2

Q ss_pred             CCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccc
Q 007082          189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF  266 (619)
Q Consensus       189 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~  266 (619)
                      +...|+++++.++. +|..+  .+.|+.|++++|.++.++.  .++|++|++++|.++.+|..+.  ++|+.|++++|.+
T Consensus       179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L  253 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI  253 (754)
T ss_pred             CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence            45666666666553 23222  2356666666666665542  3455666666665555554332  2455555555555


Q ss_pred             cchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHH
Q 007082          267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL  346 (619)
Q Consensus       267 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  346 (619)
                      ..+|..+                          ..+|+.|++++|.++.. +..+   +++|+.|++++|+++.... .+
T Consensus       254 ~~LP~~l--------------------------~s~L~~L~Ls~N~L~~L-P~~l---~~sL~~L~Ls~N~Lt~LP~-~l  302 (754)
T PRK15370        254 TELPERL--------------------------PSALQSLDLFHNKISCL-PENL---PEELRYLSVYDNSIRTLPA-HL  302 (754)
T ss_pred             CcCChhH--------------------------hCCCCEEECcCCccCcc-cccc---CCCCcEEECCCCccccCcc-cc
Confidence            5444322                          13455555555555432 2111   1455555555555554321 11


Q ss_pred             HhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC
Q 007082          347 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA  426 (619)
Q Consensus       347 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  426 (619)
                         .++|+.|++++|.++..+.. +  .++|+.|++++|.+++. |.            .+  .++|+.|++++|+++ .
T Consensus       303 ---p~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~L-P~------------~l--~~sL~~L~Ls~N~L~-~  360 (754)
T PRK15370        303 ---PSGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTSL-PA------------SL--PPELQVLDVSKNQIT-V  360 (754)
T ss_pred             ---hhhHHHHHhcCCccccCCcc-c--cccceeccccCCccccC-Ch------------hh--cCcccEEECCCCCCC-c
Confidence               23455666666665543221 1  24566666666665542 22            12  145666666666665 3


Q ss_pred             CcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch---hhccCCCCCCCcEEEcCCCccC
Q 007082          427 TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS---GLGSFKPPRSLKLLDLHGGWLL  496 (619)
Q Consensus       427 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~l~l~~n~~~  496 (619)
                      +|..+  .++|+.|+|++|+++.+++. +.  +.|+.|++++|++++.   .+..+...+.+..+++.+|++.
T Consensus       361 LP~~l--p~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        361 LPETL--PPTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CChhh--cCCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            34433  24566666666666654332 22  2466666666666532   1222233356666666666664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.6e-17  Score=178.89  Aligned_cols=246  Identities=17%  Similarity=0.215  Sum_probs=179.4

Q ss_pred             CCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC--CCCCcEEEcCCc
Q 007082          164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN--ISSLECLNLSNC  241 (619)
Q Consensus       164 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--l~~L~~L~l~~~  241 (619)
                      .+...|+++++.++.. |..+.  +.|+.|++++|.++... ..+.  .+|+.|++++|.++.++.  ..+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~LtsLP-~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTI-PACIP--EQITTLILDNNELKSLP-ENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCCcCC-hhhc--cCCCEEECCCCccccCChhhhccccEEECcCC
Confidence            4688999999888754 44442  58999999999998654 3332  589999999999998873  357999999999


Q ss_pred             cccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHH
Q 007082          242 TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV  321 (619)
Q Consensus       242 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  321 (619)
                      .+..+|..+.  .+|+.|++++|.+..+|..+    .++|+.|++++|.++.++.. ..++|+.|++++|.++.... .+
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l----~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~LP~-~l  323 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHNKISCLPENL----PEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTALPE-TL  323 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCCccCcccccc----CCCCcEEECCCCccccCccc-chhhHHHHHhcCCccccCCc-cc
Confidence            9999988764  58999999999999877543    25799999999988876321 12468888888888875432 22


Q ss_pred             HhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhh
Q 007082          322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV  401 (619)
Q Consensus       322 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~  401 (619)
                         .++|+.|++++|.++..+ ..+   +++|+.|++++|+++..+ ..+  .++|++|++++|+++..++.        
T Consensus       324 ---~~sL~~L~Ls~N~Lt~LP-~~l---~~sL~~L~Ls~N~L~~LP-~~l--p~~L~~LdLs~N~Lt~LP~~--------  385 (754)
T PRK15370        324 ---PPGLKTLEAGENALTSLP-ASL---PPELQVLDVSKNQITVLP-ETL--PPTITTLDVSRNALTNLPEN--------  385 (754)
T ss_pred             ---cccceeccccCCccccCC-hhh---cCcccEEECCCCCCCcCC-hhh--cCCcCEEECCCCcCCCCCHh--------
Confidence               167888888888887753 333   468888888888887543 333  36788888888888754332        


Q ss_pred             hhHHhhccCCcCCEEEccCCCCCCCCcccc----cCCCCCCEEecCCCCCCc
Q 007082          402 LSLTALQNLNHLERLNLEQTQVSDATLFPL----STFKELIHLSLRNASLTD  449 (619)
Q Consensus       402 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~  449 (619)
                           +.  .+|+.|++++|++. .+|..+    ..++++..|++.+|.++.
T Consensus       386 -----l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        386 -----LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             -----HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence                 22  25778888888877 344433    334677888888888764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.46  E-value=2.8e-16  Score=131.17  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=145.2

Q ss_pred             hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCC
Q 007082          296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP  375 (619)
Q Consensus       296 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  375 (619)
                      .+..+.+++.|.++.|.++...| .++.+ .+|+.|++++|++.+.+...  +.+++|+.|+++-|++.- .|..|+.+|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vpp-nia~l-~nlevln~~nnqie~lp~~i--ssl~klr~lnvgmnrl~~-lprgfgs~p  102 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPP-NIAEL-KNLEVLNLSNNQIEELPTSI--SSLPKLRILNVGMNRLNI-LPRGFGSFP  102 (264)
T ss_pred             cccchhhhhhhhcccCceeecCC-cHHHh-hhhhhhhcccchhhhcChhh--hhchhhhheecchhhhhc-CccccCCCc
Confidence            34455677788888888875443 45555 78888888888888874433  568999999999888754 466789999


Q ss_pred             CCcEEEccCCccCc-chhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHh
Q 007082          376 SLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ  454 (619)
Q Consensus       376 ~L~~L~L~~n~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  454 (619)
                      .|+.||+++|++.. .+|.            .|..++.|+.|+|++|.+. .+|..++.+++|+.|.+..|.+-. .|..
T Consensus       103 ~levldltynnl~e~~lpg------------nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpke  168 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPG------------NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKE  168 (264)
T ss_pred             hhhhhhccccccccccCCc------------chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHH
Confidence            99999999998865 4666            6888899999999999997 778899999999999999998876 4678


Q ss_pred             hcCCCCCCEEEcCCCccCchhhccCCCC---CCCcEEEcCCCccCCHH
Q 007082          455 LSSLSKLTNLSIRDAVLTNSGLGSFKPP---RSLKLLDLHGGWLLTED  499 (619)
Q Consensus       455 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~l~l~~n~~~~~~  499 (619)
                      ++.+++|++|.+.+|+++-..|+ ++.+   .+-+.+.+..|||....
T Consensus       169 ig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  169 IGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             HHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCChH
Confidence            89999999999999999876554 3333   34456778899997643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=8.4e-14  Score=126.84  Aligned_cols=209  Identities=20%  Similarity=0.253  Sum_probs=146.0

Q ss_pred             HHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhcc-------------ChhhHHHhcCCccEEeccCCCCCCh
Q 007082           14 IEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-------------FPSLLEVFKHNAEAIELRGENSVDA   80 (619)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-------------~p~~~~~~~~~l~~L~Ls~~~~~~~   80 (619)
                      +..||++|..+..=..-+..+..-...+.+..+.+|...+..             +...+.+|.+.++.||||.......
T Consensus       121 ~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s  200 (419)
T KOG2120|consen  121 VSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS  200 (419)
T ss_pred             HHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH
Confidence            466899987663222222222222222333344455555433             2234556777899999999873344


Q ss_pred             HHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhh-cCCCCCcEEEccCCCCChhHHH-
Q 007082           81 EWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTADGIA-  158 (619)
Q Consensus        81 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~-  158 (619)
                      .....+..|.+|+.|+|.+++ +.+.....+++-.+|+.|+|+.|+.++......+ .+|+.|..|+++.|.+...... 
T Consensus       201 tl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv  279 (419)
T KOG2120|consen  201 TLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV  279 (419)
T ss_pred             HHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence            566678899999999999987 7777777899999999999999998888776654 4899999999999977654433 


Q ss_pred             Hhhc-CCCCCEEEcCCCC--CChhHHHHh-hcCCCCCEEEccCC-ccCchhhHhhcCCCCCCEEecCCCC
Q 007082          159 LLSS-LQNLSVLDLGGLP--VTDLVLRSL-QVLTKLEYLDLWGS-QVSNRGAAVLKMFPRLSFLNLAWTG  223 (619)
Q Consensus       159 ~~~~-l~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~  223 (619)
                      .++. -++|+.|+++|+.  +.....+.+ ..|++|.+|||+++ .++......|.+++.|++|.++.|.
T Consensus       280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            2222 3689999999875  333333333 57999999999887 5666666677788777777777764

>PLN03150 hypothetical protein; Provisional

Probab=99.43  E-value=1.2e-13  Score=148.82  Aligned_cols=110  Identities=18%  Similarity=0.249  Sum_probs=98.7

Q ss_pred             CCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhh
Q 007082          376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL  455 (619)
Q Consensus       376 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  455 (619)
                      .++.|+|++|.+.+.+|.            .+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+
T Consensus       419 ~v~~L~L~~n~L~g~ip~------------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN------------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEEECCCCCccccCCH------------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence            478899999999998888            78999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEcCCCccCchhhccCCCC-CCCcEEEcCCCccCC
Q 007082          456 SSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLT  497 (619)
Q Consensus       456 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~  497 (619)
                      +.+++|+.|+|++|++++..|..+... ..+..+++.+|+..|
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            999999999999999999988877653 467789999998876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.42  E-value=5.1e-13  Score=124.81  Aligned_cols=198  Identities=21%  Similarity=0.247  Sum_probs=108.6

Q ss_pred             ccCCCcEEeccCCCcchh------hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcC
Q 007082          277 ETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL  350 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  350 (619)
                      .+++|++++||+|-+..-      ..+.++..|++|.+.+|.+....-..++.   .|..|.  .        ....+.-
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~--~--------~kk~~~~  156 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA--V--------NKKAASK  156 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH--H--------HhccCCC
Confidence            344555555555544221      34455666666666666655433333321   111111  0        0011234


Q ss_pred             CCCcEEEccCCCCChHHH----HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC
Q 007082          351 PNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA  426 (619)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  426 (619)
                      +.|+++....|++.+...    ..|...+.|+.+.++.|.+...-.        ..-...|..|++|++|||.+|-++..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--------~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--------TALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--------HHHHHHHHhCCcceeeecccchhhhH
Confidence            567777777766654332    334456677777777776532100        01112567777777777777766543


Q ss_pred             C----cccccCCCCCCEEecCCCCCCchhHHhh-----cCCCCCCEEEcCCCccCchhh----ccCCCCCCCcEEEcCCC
Q 007082          427 T----LFPLSTFKELIHLSLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGL----GSFKPPRSLKLLDLHGG  493 (619)
Q Consensus       427 ~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~l~l~~n  493 (619)
                      .    ...+..+++|++|++++|.+.......|     ...|+|+.+.+.+|.++....    ..+...+.|..|++++|
T Consensus       229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            2    2334566777777777777665433332     236778888888887765322    22334577888888888


Q ss_pred             cc
Q 007082          494 WL  495 (619)
Q Consensus       494 ~~  495 (619)
                      .+
T Consensus       309 ~l  310 (382)
T KOG1909|consen  309 RL  310 (382)
T ss_pred             cc
Confidence            87

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.42  E-value=2.2e-13  Score=130.02  Aligned_cols=322  Identities=23%  Similarity=0.333  Sum_probs=172.1

Q ss_pred             HhcC-CCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCC-CCChhHHH-Hh
Q 007082           86 LGAF-RYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGIA-LL  160 (619)
Q Consensus        86 ~~~~-~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~-~~~~~~~~-~~  160 (619)
                      +.++ ..|+.|++++|..+.+..+..+. +|++++.|.+.+|..+++.....++ .|++|++|++..| .+++.... .-
T Consensus       133 ~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  133 ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence            3344 37999999999988888887776 8999999999999888888777776 6888888888875 45554444 22


Q ss_pred             hcCCCCCEEEcCCCC-CChhHHHHh-hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEc
Q 007082          161 SSLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNL  238 (619)
Q Consensus       161 ~~l~~L~~L~L~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l  238 (619)
                      ..|++|++|+++.+. +++.....+ .+++.++.+.+.|+.  +....                                
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le--------------------------------  258 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELE--------------------------------  258 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHH--------------------------------
Confidence            356666666666553 222111111 122222222222210  00000                                


Q ss_pred             CCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcC-CCCChhH
Q 007082          239 SNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS-SMIGDDS  317 (619)
Q Consensus       239 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~-n~l~~~~  317 (619)
                            .+.                                               ..-..+..+..+++.. +.+++..
T Consensus       259 ------~l~-----------------------------------------------~~~~~~~~i~~lnl~~c~~lTD~~  285 (483)
T KOG4341|consen  259 ------ALL-----------------------------------------------KAAAYCLEILKLNLQHCNQLTDED  285 (483)
T ss_pred             ------HHH-----------------------------------------------HHhccChHhhccchhhhccccchH
Confidence                  000                                               0001112222222222 2344444


Q ss_pred             HHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEEEccCCC-CChHHHHHhh-CCCCCcEEEccCCccCcc--hh
Q 007082          318 VEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFIDISNTDIKGF--IQ  392 (619)
Q Consensus       318 ~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~L~~n~~~~~--~~  392 (619)
                      ...+...+..|+.|..+++ .+++.....+...+++|+.|-+++|+ +++.....++ +++.|+.+++..+.....  +.
T Consensus       286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh
Confidence            4444433344555555443 23444444444445555555555543 3332222222 334444444433322110  00


Q ss_pred             ccccchhhhhhHHhhccCCcCCEEEccCCC-CCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCcc
Q 007082          393 QVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  471 (619)
Q Consensus       393 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  471 (619)
                      .            .-.+++.|++|.+++|. +++.....+.                    ..-..+..|..+.|++++.
T Consensus       366 s------------ls~~C~~lr~lslshce~itD~gi~~l~--------------------~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  366 S------------LSRNCPRLRVLSLSHCELITDEGIRHLS--------------------SSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             h------------hccCCchhccCChhhhhhhhhhhhhhhh--------------------hccccccccceeeecCCCC
Confidence            0            12344555555555552 2222111111                    0112245566666666654


Q ss_pred             Cc-hhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeeecccccccCCCCC
Q 007082          472 TN-SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQI  526 (619)
Q Consensus       472 ~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (619)
                      .. ...+.+..++.|+.+++.++.-.....+..+...+|.+++..+.....|++..
T Consensus       414 i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~~v  469 (483)
T KOG4341|consen  414 ITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPGFV  469 (483)
T ss_pred             chHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcccc
Confidence            33 34455667788899999999998999999999999999999888888776543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=5.1e-14  Score=135.01  Aligned_cols=212  Identities=24%  Similarity=0.263  Sum_probs=138.9

Q ss_pred             CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCC
Q 007082          252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN  327 (619)
Q Consensus       252 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  327 (619)
                      +..+|+++.+.++........-....|++++.|+++.|-+..+    .....+++|+.|+++.|.+....-.......+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3444445555544444333211233566666666666666554    455678888888888877543222111112278


Q ss_pred             CcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  407 (619)
Q Consensus       328 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~  407 (619)
                      |+.|.++.|.++..........+|+|+.|++..|............+..|++|+|++|++.......           ..
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-----------~~  267 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-----------KV  267 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-----------cc
Confidence            9999999999887666666677999999999998522222223345678899999999886553221           46


Q ss_pred             ccCCcCCEEEccCCCCCCCC-ccc-----ccCCCCCCEEecCCCCCCchh-HHhhcCCCCCCEEEcCCCccCch
Q 007082          408 QNLNHLERLNLEQTQVSDAT-LFP-----LSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      +.++.|..|+++.|.+.+.- |+.     ...+++|++|+++.|++.... ...+..+++|+.|.+..|.++..
T Consensus       268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            78888889999998887532 222     245788999999999886642 34556678888888888888753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.36  E-value=5.4e-13  Score=124.69  Aligned_cols=168  Identities=26%  Similarity=0.320  Sum_probs=116.1

Q ss_pred             CCCcEEEccCCCCCCchH---HHHHhcCCCCcEEEccCCCCChHHHHH-------------hhCCCCCcEEEccCCccCc
Q 007082          326 ANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSLSGTQIDDYAISY-------------MSMMPSLKFIDISNTDIKG  389 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~-------------~~~~~~L~~L~L~~n~~~~  389 (619)
                      +.|++|+||+|-+....+   ..+...+.+|++|.|.+|.+.-.....             .+.-+.|+.+...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            456666666665544222   233345666666666666655332222             3456899999999999864


Q ss_pred             chhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc----ccccCCCCCCEEecCCCCCCchh----HHhhcCCCCC
Q 007082          390 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL----FPLSTFKELIHLSLRNASLTDVS----LHQLSSLSKL  461 (619)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L  461 (619)
                      ....        ..-..|+..+.|+.+.+..|.+.....    ..|..+++|++|||.+|.++...    ...+..+++|
T Consensus       172 ~ga~--------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  172 GGAT--------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             ccHH--------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            3221        111268888999999999998864333    45678999999999999887653    3456778999


Q ss_pred             CEEEcCCCccCchhhccC----C-CCCCCcEEEcCCCccCCHHHH
Q 007082          462 TNLSIRDAVLTNSGLGSF----K-PPRSLKLLDLHGGWLLTEDAI  501 (619)
Q Consensus       462 ~~L~L~~n~l~~~~~~~~----~-~~~~L~~l~l~~n~~~~~~~~  501 (619)
                      ++|++++|.+...+...+    . ..++|+.+.+.+|.+.-+...
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            999999999987544332    2 258999999999998665533

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=6.3e-15  Score=123.18  Aligned_cols=157  Identities=21%  Similarity=0.314  Sum_probs=122.2

Q ss_pred             CCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082          279 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (619)
Q Consensus       279 ~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  357 (619)
                      +.++.|.+++|.++.+ +.+..+.+|+.|++.+|++++ .|..+..+ ++|+.|++.-|++... |..| |.+|.|+.||
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl-~klr~lnvgmnrl~~l-prgf-gs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSL-PKLRILNVGMNRLNIL-PRGF-GSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhc-hhhhheecchhhhhcC-cccc-CCCchhhhhh
Confidence            4444555555555555 456677888888888888875 44456666 8888888888887665 4444 7799999999


Q ss_pred             ccCCCCCh-HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          358 LSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       358 l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      +.+|++.. ..|..|..+..|+-|++++|.+.-. |.            .++.+++|+.|.+.+|.+- ..|..++.+..
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~------------dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PP------------DVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccC-Ch------------hhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            99988775 4566777889999999999998644 44            5889999999999999887 67889999999


Q ss_pred             CCEEecCCCCCCchhHH
Q 007082          437 LIHLSLRNASLTDVSLH  453 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~  453 (619)
                      |++|.+.+|.++-++|+
T Consensus       175 lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  175 LRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHhcccceeeecChh
Confidence            99999999999887653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.34  E-value=1.1e-12  Score=125.35  Aligned_cols=149  Identities=22%  Similarity=0.330  Sum_probs=105.1

Q ss_pred             HHhcchhH--HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHH-HHHHhcCCCcc
Q 007082           17 ACQSGESV--QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEW-MAYLGAFRYLR   93 (619)
Q Consensus        17 ~~~~~~~~--~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~-~~~~~~~~~L~   93 (619)
                      +|+.|...  ...++++..+...+.++...++..+....          ...++.|.+.++..+.... -.....||+++
T Consensus        98 ~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rc----------gg~lk~LSlrG~r~v~~sslrt~~~~CpnIe  167 (483)
T KOG4341|consen   98 CCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRC----------GGFLKELSLRGCRAVGDSSLRTFASNCPNIE  167 (483)
T ss_pred             HHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhh----------ccccccccccccccCCcchhhHHhhhCCchh
Confidence            44444332  23334555666666555544444333321          1348999999988665444 44456799999


Q ss_pred             EEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCC-CCChhHHH-HhhcCCCCCEE
Q 007082           94 SLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSET-GLTADGIA-LLSSLQNLSVL  169 (619)
Q Consensus        94 ~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~-~~~~~~~~-~~~~l~~L~~L  169 (619)
                      +|++.+|..+++.....++ .|++|+.|+|..|..+++.....++ .|++|++++++.+ .+++.... .+.++..++.+
T Consensus       168 hL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~  247 (483)
T KOG4341|consen  168 HLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKL  247 (483)
T ss_pred             hhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhh
Confidence            9999999999999888887 7999999999999899988888776 7999999999988 45554333 34467777777


Q ss_pred             EcCCCC
Q 007082          170 DLGGLP  175 (619)
Q Consensus       170 ~L~~n~  175 (619)
                      .+.+|.
T Consensus       248 ~~kGC~  253 (483)
T KOG4341|consen  248 SLKGCL  253 (483)
T ss_pred             hhcccc
Confidence            777653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.8e-12  Score=123.26  Aligned_cols=212  Identities=20%  Similarity=0.244  Sum_probs=155.9

Q ss_pred             hccCCCcEEeccCCCcchhh---hhhcCCCCCEEeCcCCCCChhH-HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCC
Q 007082          276 IETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDS-VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP  351 (619)
Q Consensus       276 ~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  351 (619)
                      .++.+|+.+.+.++......   ....|++++.||++.|-+.... ...+....|+|+.|+++.|++....-......++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            36788999999999876663   6788999999999999887633 2334444499999999999876543333334688


Q ss_pred             CCcEEEccCCCCChHHHH-HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC-cc
Q 007082          352 NLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LF  429 (619)
Q Consensus       352 ~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~  429 (619)
                      .|+.|.++.|.++..... ....+|+|+.|++..|........            ....+..|+.|+|++|++-+.. ..
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------~~~i~~~L~~LdLs~N~li~~~~~~  265 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------STKILQTLQELDLSNNNLIDFDQGY  265 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc------------hhhhhhHHhhccccCCccccccccc
Confidence            999999999999865433 344899999999999963222222            3556778999999999876432 24


Q ss_pred             cccCCCCCCEEecCCCCCCchhH-Hh-----hcCCCCCCEEEcCCCccCch-hhccCCCCCCCcEEEcCCCccCCHH
Q 007082          430 PLSTFKELIHLSLRNASLTDVSL-HQ-----LSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWLLTED  499 (619)
Q Consensus       430 ~~~~l~~L~~L~L~~n~l~~~~~-~~-----~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~  499 (619)
                      ..+.++.|+.|+++.|.+..+.. +.     ...+++|+.|+++.|++... ....+..+++|+.+.+..|++....
T Consensus       266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~  342 (505)
T KOG3207|consen  266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET  342 (505)
T ss_pred             ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc
Confidence            56788999999999998877632 22     34579999999999999652 1223334578888888888886543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=7e-11  Score=104.00  Aligned_cols=124  Identities=28%  Similarity=0.359  Sum_probs=35.2

Q ss_pred             CccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEcc
Q 007082          255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS  334 (619)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  334 (619)
                      ++++|++.+|.+..+....  ..+.+|+.|++++|.++.++.+..+++|++|++++|.++.........+ ++|++|+++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~--~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l-p~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLG--ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL-PNLQELYLS   96 (175)
T ss_dssp             ----------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH--TT--EEE-T
T ss_pred             ccccccccccccccccchh--hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC-CcCCEEECc
Confidence            4455555555444432210  1345566666666666666666666667777777666665432211222 666666666


Q ss_pred             CCCCCCchHHHHHhcCCCCcEEEccCCCCChH---HHHHhhCCCCCcEEE
Q 007082          335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDY---AISYMSMMPSLKFID  381 (619)
Q Consensus       335 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~  381 (619)
                      +|++.+..--...+.+++|+.|++.+|.++..   -...+..+|+|+.||
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            66665532211123466666666666655432   122344555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=1.1e-11  Score=113.25  Aligned_cols=227  Identities=18%  Similarity=0.185  Sum_probs=137.5

Q ss_pred             HHHHHhcCCCccEEEcCCCCC------C-ChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCCh
Q 007082           82 WMAYLGAFRYLRSLNVADCRR------V-TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTA  154 (619)
Q Consensus        82 ~~~~~~~~~~L~~L~L~~~~~------~-~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~  154 (619)
                      +...+.-+.+|++|..+.-..      | ....+..+.-+++|+.+.++.|..  .........-|.|.++.+.+..+..
T Consensus       174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~  251 (490)
T KOG1259|consen  174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQD  251 (490)
T ss_pred             hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccc
Confidence            334444455677777665321      1 111111234456777777777731  1111111234677777777655443


Q ss_pred             hHHHHhhcCCCCCEEEcCC-CCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC---CC
Q 007082          155 DGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP---NI  230 (619)
Q Consensus       155 ~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~---~l  230 (619)
                      .+.  +-..+.+....-.. ....|.....+.....|+++|+++|.|+. +...+.-.|.++.|++++|++..+.   .+
T Consensus       252 ~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~nLa~L  328 (490)
T KOG1259|consen  252 VPS--LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQNLAEL  328 (490)
T ss_pred             ccc--ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeeehhhhhc
Confidence            211  11111111111111 11222222222334567888888887763 3445666778888888888777544   56


Q ss_pred             CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCEEe
Q 007082          231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLD  307 (619)
Q Consensus       231 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~  307 (619)
                      ++|+.|++++|.++.+..+-..+-++++|.+.+|.+.+...   ...+-+|..||+++|++..+   ..++++|.|+++.
T Consensus       329 ~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  329 PQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG---LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             ccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh---hHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            78888888888888776666678888888888888776654   34667888999999988777   4677889999999


Q ss_pred             CcCCCCChh
Q 007082          308 LSSSMIGDD  316 (619)
Q Consensus       308 l~~n~l~~~  316 (619)
                      +.+|.+...
T Consensus       406 L~~NPl~~~  414 (490)
T KOG1259|consen  406 LTGNPLAGS  414 (490)
T ss_pred             hcCCCcccc
Confidence            999987654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.07  E-value=1e-10  Score=103.00  Aligned_cols=97  Identities=27%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             CCCCEEecCCCCCCCC---CCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEecc
Q 007082          212 PRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS  287 (619)
Q Consensus       212 ~~L~~L~l~~n~l~~l---~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  287 (619)
                      .+|+.|++++|.++.+   +.++.|++|++++|.++.+.+.+. .+++|++|++++|++...........+++|+.|++.
T Consensus        42 ~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred             cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence            3444444444443322   234455555555555555443332 345555555555554443332233344444444444


Q ss_pred             CCCcchh-----hhhhcCCCCCEEeC
Q 007082          288 NSSLSRF-----CFLTQMKALEHLDL  308 (619)
Q Consensus       288 ~n~l~~~-----~~~~~~~~L~~L~l  308 (619)
                      +|++...     ..+..+|+|+.||-
T Consensus       122 ~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  122 GNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCcccchhhHHHHHHHHcChhheeCC
Confidence            4444322     23344455555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=1.5e-10  Score=105.96  Aligned_cols=131  Identities=26%  Similarity=0.397  Sum_probs=91.2

Q ss_pred             CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  380 (619)
                      ..|+++|+++|.|+.. .+...-. |.++.|++++|.+.....  + ..+++|+.||+++|.++... .+-..+.+++.|
T Consensus       284 q~LtelDLS~N~I~~i-DESvKL~-Pkir~L~lS~N~i~~v~n--L-a~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI-DESVKLA-PKLRRLILSQNRIRTVQN--L-AELPQLQLLDLSGNLLAECV-GWHLKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchhhh-hhhhhhc-cceeEEeccccceeeehh--h-hhcccceEeecccchhHhhh-hhHhhhcCEeee
Confidence            4577777887777642 2233333 788888888888776544  2 34788888888888776542 223367788888


Q ss_pred             EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC-CcccccCCCCCCEEecCCCCCCchh
Q 007082          381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTDVS  451 (619)
Q Consensus       381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~  451 (619)
                      .|++|.+....              .+..+.+|..||+++|++... -...++++|-|+.+.|.+|.+.+++
T Consensus       358 ~La~N~iE~LS--------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  358 KLAQNKIETLS--------------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ehhhhhHhhhh--------------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            88888775332              567778888888888887642 2356778888999999999888753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.8e-10  Score=105.41  Aligned_cols=194  Identities=23%  Similarity=0.290  Sum_probs=98.3

Q ss_pred             CcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEE
Q 007082          281 LSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       281 L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L  356 (619)
                      |+++|+++..++.-   ..++.|.+|+.|.+.++++.+.....+++. .+|+.|+++.| .++......++.+|..|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            44555554444332   344555555555555555555555555544 55555555553 34444444444555555555


Q ss_pred             EccCCCCChHHHHH-hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCC--CCCCCccc-cc
Q 007082          357 SLSGTQIDDYAISY-MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ--VSDATLFP-LS  432 (619)
Q Consensus       357 ~l~~n~l~~~~~~~-~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~-~~  432 (619)
                      +++.|.+....... +.+                                   --++|+.|+|+++.  +....... ..
T Consensus       266 NlsWc~l~~~~Vtv~V~h-----------------------------------ise~l~~LNlsG~rrnl~~sh~~tL~~  310 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAH-----------------------------------ISETLTQLNLSGYRRNLQKSHLSTLVR  310 (419)
T ss_pred             CchHhhccchhhhHHHhh-----------------------------------hchhhhhhhhhhhHhhhhhhHHHHHHH
Confidence            55554433222111 110                                   01345555555531  11111111 23


Q ss_pred             CCCCCCEEecCCC-CCCchhHHhhcCCCCCCEEEcCCCccCchhhcc---CCCCCCCcEEEcCCCccCCHHHHHHHHHhC
Q 007082          433 TFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS---FKPPRSLKLLDLHGGWLLTEDAILQFCKMH  508 (619)
Q Consensus       433 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  508 (619)
                      .+++|.+|||++| .++......|-.++.|++|.++.|..  ++|+.   +...|+|.+||+.|+-  .+-...-+....
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v--sdt~mel~~e~~  386 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV--SDTTMELLKEML  386 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc--CchHHHHHHHhC
Confidence            4666777777665 35554445566677777777777653  23333   3445788888888773  244555566666


Q ss_pred             CCeeee
Q 007082          509 PRIEVW  514 (619)
Q Consensus       509 ~~~~~~  514 (619)
                      +.+.+.
T Consensus       387 ~~lkin  392 (419)
T KOG2120|consen  387 SHLKIN  392 (419)
T ss_pred             cccccc
Confidence            665554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.97  E-value=3.9e-11  Score=119.12  Aligned_cols=193  Identities=21%  Similarity=0.268  Sum_probs=144.2

Q ss_pred             CCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEE
Q 007082          254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN  332 (619)
Q Consensus       254 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  332 (619)
                      ..-...+++.|++..++..+.  .+..|+.+.+..|.+..+ ..+..+..|++++++.|++.-.......   --|+.|.
T Consensus        75 tdt~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~---lpLkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD---LPLKVLI  149 (722)
T ss_pred             cchhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc---CcceeEE
Confidence            334455666666666665432  445666677777776666 5677788899999999998765544332   5699999


Q ss_pred             ccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCc
Q 007082          333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH  412 (619)
Q Consensus       333 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~  412 (619)
                      +++|+++....+ + +..+.|..||.+.|++...+ ..++++.+|+.|.+..|++....++             +..+ .
T Consensus       150 ~sNNkl~~lp~~-i-g~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp~E-------------l~~L-p  212 (722)
T KOG0532|consen  150 VSNNKLTSLPEE-I-GLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLPEE-------------LCSL-P  212 (722)
T ss_pred             EecCccccCCcc-c-ccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCCHH-------------HhCC-c
Confidence            999999886443 3 46789999999999988754 4578899999999999999877665             4455 4


Q ss_pred             CCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC---CCCCCEEEcCCCc
Q 007082          413 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS---LSKLTNLSIRDAV  470 (619)
Q Consensus       413 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~  470 (619)
                      |..||++.|+++ .+|..|..+..|++|-|.+|.++.. |..+..   ..=.++|+..-++
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence            899999999998 7899999999999999999999884 444332   2334677777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=1.6e-09  Score=111.85  Aligned_cols=178  Identities=29%  Similarity=0.402  Sum_probs=97.9

Q ss_pred             CCCcEEeccCCCcchhhhhhcCC--CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          279 SLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       279 ~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      +.+..+++.+|.++.++......  +|+.|++++|.+.... ..+..+ ++|+.|++++|++++.....  +..+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l-~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNL-PNLKNLDLSFNDLSDLPKLL--SNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhcc-ccccccccCCchhhhhhhhh--hhhhhhhhe
Confidence            44555555555555443222222  5666666666655431 122222 56666666666666543322  135666666


Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      ++++|++....+. ......|+++.+++|+....+.             .+..+.++..+.+.+|++.. .+..+..+++
T Consensus       192 ~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~-------------~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~  256 (394)
T COG4886         192 DLSGNKISDLPPE-IELLSALEELDLSNNSIIELLS-------------SLSNLKNLSGLELSNNKLED-LPESIGNLSN  256 (394)
T ss_pred             eccCCccccCchh-hhhhhhhhhhhhcCCcceecch-------------hhhhcccccccccCCceeee-ccchhccccc
Confidence            6666666654432 2334446666666664322221             35566666666666666653 2455566666


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  477 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  477 (619)
                      ++.|++++|.++.+..  ++...+++.|++++|.++...+.
T Consensus       257 l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         257 LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            7777777777766543  66667777777777776655443

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=2e-09  Score=116.33  Aligned_cols=108  Identities=20%  Similarity=0.257  Sum_probs=99.8

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082          352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  431 (619)
Q Consensus       352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  431 (619)
                      .++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|.            .+..+++|+.|+|++|++++.+|..+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~------------~~~~l~~L~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------SLGSITSLEVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh------------HHhCCCCCCEEECCCCCCCCCCchHH
Confidence            378999999999999999999999999999999999999998            79999999999999999999999999


Q ss_pred             cCCCCCCEEecCCCCCCchhHHhhcCC-CCCCEEEcCCCcc
Q 007082          432 STFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVL  471 (619)
Q Consensus       432 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l  471 (619)
                      +.+++|+.|+|++|++++.+|..+... .++..+++.+|..
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            999999999999999999999888763 4678899999864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.89  E-value=4.1e-09  Score=108.77  Aligned_cols=157  Identities=29%  Similarity=0.380  Sum_probs=106.5

Q ss_pred             CCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEc
Q 007082          280 LLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL  358 (619)
Q Consensus       280 ~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  358 (619)
                      +|+.|++++|.+... ..+..+++|+.|++++|++.+...... .. +.|+.|++++|++.......  +....|++|.+
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~-~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NL-SNLNNLDLSGNKISDLPPEI--ELLSALEELDL  216 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hh-hhhhheeccCCccccCchhh--hhhhhhhhhhh
Confidence            455555555555555 356677778888888777776544321 22 77888888888887765432  22455888888


Q ss_pred             cCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCC
Q 007082          359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI  438 (619)
Q Consensus       359 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  438 (619)
                      ++|.+... +..+..+.++..+.+.+|++... +.            .++.++++++|++++|+++....  +..+.+++
T Consensus       217 ~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~-~~------------~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~  280 (394)
T COG4886         217 SNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PE------------SIGNLSNLETLDLSNNQISSISS--LGSLTNLR  280 (394)
T ss_pred             cCCcceec-chhhhhcccccccccCCceeeec-cc------------hhccccccceecccccccccccc--ccccCccC
Confidence            88853332 23466777888888888877553 22            56778889999999998875433  77888899


Q ss_pred             EEecCCCCCCchhHHhhc
Q 007082          439 HLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       439 ~L~L~~n~l~~~~~~~~~  456 (619)
                      .|++++|.++...+....
T Consensus       281 ~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         281 ELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             EEeccCccccccchhhhc
Confidence            999999988877655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.86  E-value=7e-11  Score=117.38  Aligned_cols=195  Identities=20%  Similarity=0.279  Sum_probs=148.1

Q ss_pred             ccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcE
Q 007082          277 ETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI  355 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  355 (619)
                      .+..-...+++.|.+..+ ..+..+..|+.+.+..|.+-. .+..+..+ ..|+.++++.|+++.......  .+ -|+.
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L-~~lt~l~ls~NqlS~lp~~lC--~l-pLkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-IPEAICNL-EALTFLDLSSNQLSHLPDGLC--DL-PLKV  147 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-cchhhhhh-hHHHHhhhccchhhcCChhhh--cC-ccee
Confidence            455566788899998887 456677788888888777653 44555555 889999999999988766543  24 4999


Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCC
Q 007082          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  435 (619)
Q Consensus       356 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  435 (619)
                      |-+++|+++..+ ..++..+.|.+|+.+.|++....+             .+.++.+|+.|++..|++. ..|..+..++
T Consensus       148 li~sNNkl~~lp-~~ig~~~tl~~ld~s~nei~slps-------------ql~~l~slr~l~vrRn~l~-~lp~El~~Lp  212 (722)
T KOG0532|consen  148 LIVSNNKLTSLP-EEIGLLPTLAHLDVSKNEIQSLPS-------------QLGYLTSLRDLNVRRNHLE-DLPEELCSLP  212 (722)
T ss_pred             EEEecCccccCC-cccccchhHHHhhhhhhhhhhchH-------------HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc
Confidence            999999998754 446788999999999999876555             4888999999999999998 5577777554


Q ss_pred             CCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccC--CCCCCCcEEEcCCC
Q 007082          436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF--KPPRSLKLLDLHGG  493 (619)
Q Consensus       436 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~l~l~~n  493 (619)
                       |..||++.|+++. +|..|..++.|++|.|.+|.+........  +...-.++|+..-|
T Consensus       213 -Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  213 -LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -eeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence             8999999999998 46788999999999999999986432211  11233345555555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.5e-09  Score=78.38  Aligned_cols=59  Identities=25%  Similarity=0.392  Sum_probs=28.0

Q ss_pred             cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082          412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                      +|++|++++|+++...+..|..+++|++|++++|.++.+.+..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444333444444444444444444444444444444444444444443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=2.9e-10  Score=117.45  Aligned_cols=110  Identities=25%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             CCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEE
Q 007082          227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL  306 (619)
Q Consensus       227 l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L  306 (619)
                      +..+.+|+.|++.+|.+..+...+..+++|+.|++++|.++.+.+.   ..++.|+.|++++|.+..+..+..++.|+.+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLSGNLISDISGLESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheeccCcchhccCCccchhhhcc
Confidence            3445555666666666555544444555566666666555554432   2344566677777777666666666777777


Q ss_pred             eCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCC
Q 007082          307 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS  340 (619)
Q Consensus       307 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  340 (619)
                      ++++|.+..........+ .+++.+++.+|.+..
T Consensus       168 ~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  168 DLSYNRIVDIENDELSEL-ISLEELDLGGNSIRE  200 (414)
T ss_pred             cCCcchhhhhhhhhhhhc-cchHHHhccCCchhc
Confidence            777776665444101222 556666666665554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=2.2e-09  Score=77.50  Aligned_cols=61  Identities=30%  Similarity=0.400  Sum_probs=58.1

Q ss_pred             CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082          435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       435 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  495 (619)
                      ++|++|++++|+++.+.+..|..+++|++|++++|.++...+..|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999999999999999999999999999999999999999999999999975

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=3.6e-09  Score=116.69  Aligned_cols=178  Identities=20%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             cCCCccEEEcCCCCC-CChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCC
Q 007082           88 AFRYLRSLNVADCRR-VTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL  166 (619)
Q Consensus        88 ~~~~L~~L~L~~~~~-~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L  166 (619)
                      .+++|++|-+.++.. +.......|..++.|++|||++|..+ ...|..++++-+||+|+++++.+... |..++++..|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHL-PSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcccc-chHHHHHHhh
Confidence            455677777776642 33333444666777777777776433 34566667777777777777777643 5556777777


Q ss_pred             CEEEcCCCCCChhHHHHhhcCCCCCEEEccCCcc--CchhhHhhcCCCCCCEEecCCCCC---CCCCCCCCCc----EEE
Q 007082          167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV--SNRGAAVLKMFPRLSFLNLAWTGV---TKLPNISSLE----CLN  237 (619)
Q Consensus       167 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l---~~l~~l~~L~----~L~  237 (619)
                      .+|++..+......+.....+.+|++|.+.....  +...-..+.++.+|+.+.......   ..+..+..|.    .+.
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~  700 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS  700 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence            7777776654333344455577777777755431  122223334444444444433322   1111111111    222


Q ss_pred             cCCccccccccccCCCCCccEEeccCcccc
Q 007082          238 LSNCTIDSILEGNENKAPLAKISLAGTTFI  267 (619)
Q Consensus       238 l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~  267 (619)
                      +.++.....+..+..+.+|+.|.+.++...
T Consensus       701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  701 IEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             hcccccceeecccccccCcceEEEEcCCCc
Confidence            222333344444445555555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=9.3e-10  Score=113.65  Aligned_cols=242  Identities=24%  Similarity=0.281  Sum_probs=156.8

Q ss_pred             CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcC
Q 007082          231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  310 (619)
Q Consensus       231 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  310 (619)
                      ..++.+.+..|.+..+...+..+.+|+.+++.+|.+..+...  ...+++|++|++++|.++.+..+..++.|+.|++++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG  149 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhhheecc
Confidence            445555566666666545566778888888888888766552  235678888888888888887777777788888888


Q ss_pred             CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc
Q 007082          311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  390 (619)
Q Consensus       311 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~  390 (619)
                      |.+....  .+..+ ..|+.+++++|++....... ...+.+++.+++.+|.+....  .+..+..+..+++..|.++..
T Consensus       150 N~i~~~~--~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  150 NLISDIS--GLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             Ccchhcc--CCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceec
Confidence            8776432  22223 77888888888877765521 134777888888888766432  223334444446667766533


Q ss_pred             hhccccchhhhhhHHhhccCCc--CCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCC
Q 007082          391 IQQVGAETDLVLSLTALQNLNH--LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  468 (619)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  468 (619)
                      -+              +..+..  |+.+++++|.+.. .+..+..+..+..|++.+|++....  .+...+.+..+....
T Consensus       224 ~~--------------l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~  286 (414)
T KOG0531|consen  224 EG--------------LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLND  286 (414)
T ss_pred             cC--------------cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCc
Confidence            21              122222  7888888888763 2255666778888888888877643  455566677777777


Q ss_pred             CccCch---hhcc-CCCCCCCcEEEcCCCccCC
Q 007082          469 AVLTNS---GLGS-FKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       469 n~l~~~---~~~~-~~~~~~L~~l~l~~n~~~~  497 (619)
                      |.+...   .... ....+.+..+.+.+|+...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             chhcchhhhhccccccccccccccccccCcccc
Confidence            776632   1111 3345777888888887644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.70  E-value=5.1e-08  Score=88.49  Aligned_cols=203  Identities=18%  Similarity=0.176  Sum_probs=94.2

Q ss_pred             hhcCCCCCcEEEccCCCCChhHHHHhh----cCCCCCEEEcCCCC---CChhHH-------HHhhcCCCCCEEEccCCcc
Q 007082          135 HLLSISTLEKLWLSETGLTADGIALLS----SLQNLSVLDLGGLP---VTDLVL-------RSLQVLTKLEYLDLWGSQV  200 (619)
Q Consensus       135 ~l~~l~~L~~L~L~~~~~~~~~~~~~~----~l~~L~~L~L~~n~---~~~~~~-------~~~~~l~~L~~L~l~~n~i  200 (619)
                      .+..+..++.++|++|.|.......++    +-.+|+..+++.-.   ..+..+       .++..||.|+..+|+.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            344566777777777777665544333    34566666665421   122222       2334566666666666665


Q ss_pred             CchhhHh----hcCCCCCCEEecCCCCCCCCCCC---CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHH
Q 007082          201 SNRGAAV----LKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF  273 (619)
Q Consensus       201 ~~~~~~~----~~~~~~L~~L~l~~n~l~~l~~l---~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  273 (619)
                      ....|..    ++.-+.|.+|.+++|.+..+..-   ..|.+|        +...-....|.|+.+....|++...+...
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~nKKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AYNKKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HHHhhhccCCCceEEEeccchhccCcHHH
Confidence            5433322    33334444444444444322200   000000        00111224566666666666665544322


Q ss_pred             h---hhccCCCcEEeccCCCcchh-------hhhhcCCCCCEEeCcCCCCChhHHHHHHhcC---CCCcEEEccCCCCCC
Q 007082          274 L---YIETSLLSFLDVSNSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSS  340 (619)
Q Consensus       274 ~---~~~~~~L~~L~l~~n~l~~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~  340 (619)
                      .   +..-..|+.+.+..|.+..-       ..+..+.+|+.||+..|.++-.....++...   +.|++|.+.+|-++.
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            1   11223555555555555322       2334455566666666555543333222111   344555555555544


Q ss_pred             chHHH
Q 007082          341 AGVGI  345 (619)
Q Consensus       341 ~~~~~  345 (619)
                      .+...
T Consensus       257 ~G~~~  261 (388)
T COG5238         257 EGVKS  261 (388)
T ss_pred             ccHHH
Confidence            44433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=1.1e-08  Score=93.95  Aligned_cols=78  Identities=28%  Similarity=0.409  Sum_probs=46.9

Q ss_pred             CCEEEcCCCCCChhHH-HHh-hcCCCCCEEEccCCccCc--hhhHhhcCCCCCCEEecCCCCCCC----CC-CCCCCcEE
Q 007082          166 LSVLDLGGLPVTDLVL-RSL-QVLTKLEYLDLWGSQVSN--RGAAVLKMFPRLSFLNLAWTGVTK----LP-NISSLECL  236 (619)
Q Consensus       166 L~~L~L~~n~~~~~~~-~~~-~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~l~~----l~-~l~~L~~L  236 (619)
                      ++.|-+.++.|..... ..| ..++.++++||.+|.|++  .+...+.++|.|+.|+++.|.+.+    +| ...+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            4455555655544322 223 346778888888888773  444556777777777777776652    33 34456666


Q ss_pred             EcCCccc
Q 007082          237 NLSNCTI  243 (619)
Q Consensus       237 ~l~~~~l  243 (619)
                      -+.+..+
T Consensus       127 VLNgT~L  133 (418)
T KOG2982|consen  127 VLNGTGL  133 (418)
T ss_pred             EEcCCCC
Confidence            6655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=9.1e-09  Score=113.60  Aligned_cols=288  Identities=23%  Similarity=0.269  Sum_probs=142.1

Q ss_pred             CCCCcEEEccCCC--CChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCE
Q 007082          139 ISTLEKLWLSETG--LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF  216 (619)
Q Consensus       139 l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~  216 (619)
                      ++.|++|-+..|.  +.....+.|..++.|+.|||++|.-.+..|..++++-+|++|+++++.+. ..|..+.++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            4456666666654  33333444566666666666666555555666666666666666666665 45556666666666


Q ss_pred             EecCCCCCC-CCC----CCCCCcEEEcCCcccc---ccccccCCCCCccEEeccCccccchhHHHhhhccCCCc----EE
Q 007082          217 LNLAWTGVT-KLP----NISSLECLNLSNCTID---SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS----FL  284 (619)
Q Consensus       217 L~l~~n~l~-~l~----~l~~L~~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L  284 (619)
                      |++..+.-. .++    .+++|++|.+......   .....+..+.+|+.+....... .+..  .+.....|.    .+
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e--~l~~~~~L~~~~~~l  699 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLE--DLLGMTRLRSLLQSL  699 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHh--hhhhhHHHHHHhHhh
Confidence            666655321 111    3566666665443311   1112223444444444433222 0000  001111111    22


Q ss_pred             eccCCCcch-hhhhhcCCCCCEEeCcCCCCChhHHHHHHh-----cCCCCcEEEccCCC-CCCchHHHHHhcCCCCcEEE
Q 007082          285 DVSNSSLSR-FCFLTQMKALEHLDLSSSMIGDDSVEMVAC-----VGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILS  357 (619)
Q Consensus       285 ~l~~n~l~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~  357 (619)
                      .+..+.... ...+..+.+|+.|.+.++.+.+........     .++++..+...++. ..+.....   -.|+|+.|.
T Consensus       700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~  776 (889)
T KOG4658|consen  700 SIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLS  776 (889)
T ss_pred             hhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh---ccCcccEEE
Confidence            222222222 255667788888888887765433211100     00233333333432 22222222   268899999


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEccCCccCcc-hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcc---cccC
Q 007082          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF---PLST  433 (619)
Q Consensus       358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~  433 (619)
                      +..+.....+......+..+..+.+..+.+.+. .-.            ..++++++..+.+..-.+......   ....
T Consensus       777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~------------~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~  844 (889)
T KOG4658|consen  777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLC------------SLGGLPQLYWLPLSFLKLEELIVEECPKLGK  844 (889)
T ss_pred             EecccccccCCCHHHHhhhcccEEecccccccceeee------------cCCCCceeEecccCccchhheehhcCccccc
Confidence            988765555444455566666666666666554 222            345555665555555333321111   1234


Q ss_pred             CCCCCEEecCCC
Q 007082          434 FKELIHLSLRNA  445 (619)
Q Consensus       434 l~~L~~L~L~~n  445 (619)
                      +|.+..+.+.+|
T Consensus       845 ~P~~~~~~i~~~  856 (889)
T KOG4658|consen  845 LPLLSTLTIVGC  856 (889)
T ss_pred             Cccccccceecc
Confidence            566666666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.65  E-value=1e-09  Score=112.20  Aligned_cols=135  Identities=22%  Similarity=0.267  Sum_probs=96.0

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082          352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  431 (619)
Q Consensus       352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  431 (619)
                      .|...+.+.|.+.... ..+.-++.|+.|+|++|+++..-              .+..|+.|+.|||+.|.+....--..
T Consensus       165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--------------~Lr~l~~LkhLDlsyN~L~~vp~l~~  229 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--------------NLRRLPKLKHLDLSYNCLRHVPQLSM  229 (1096)
T ss_pred             hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--------------HHHhcccccccccccchhccccccch
Confidence            5666777777776533 45666788888888888876542              46778888888888888874322223


Q ss_pred             cCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchh-hccCCCCCCCcEEEcCCCccCCHHHHHHH
Q 007082          432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLLTEDAILQF  504 (619)
Q Consensus       432 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  504 (619)
                      .++. |..|.+++|.++...  .+.++.+|+.||+++|-+.+.. ...+..+..|+.|.+.|||+.|..+-...
T Consensus       230 ~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaa  300 (1096)
T KOG1859|consen  230 VGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAA  300 (1096)
T ss_pred             hhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence            3444 889999999888743  6788899999999999887742 11223347888999999999886655443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.63  E-value=1.1e-07  Score=86.26  Aligned_cols=238  Identities=17%  Similarity=0.129  Sum_probs=140.7

Q ss_pred             HHHhhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCC---CChhH-------HHHhhcCCCCCEEEcCC
Q 007082          108 LWALTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETG---LTADG-------IALLSSLQNLSVLDLGG  173 (619)
Q Consensus       108 ~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~---~~~~~-------~~~~~~l~~L~~L~L~~  173 (619)
                      ...+..+..+..++||+| .+......+++    +-.+|+..+++.-.   ..+..       ..++.+||+|+..+|+.
T Consensus        23 ~eel~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD  101 (388)
T COG5238          23 VEELEMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD  101 (388)
T ss_pred             HHHHHhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence            344567889999999999 56666666665    45788888887631   22221       24667899999999999


Q ss_pred             CCCChhHHH----HhhcCCCCCEEEccCCccCch----hhHh---------hcCCCCCCEEecCCCCCCCCC--------
Q 007082          174 LPVTDLVLR----SLQVLTKLEYLDLWGSQVSNR----GAAV---------LKMFPRLSFLNLAWTGVTKLP--------  228 (619)
Q Consensus       174 n~~~~~~~~----~~~~l~~L~~L~l~~n~i~~~----~~~~---------~~~~~~L~~L~l~~n~l~~l~--------  228 (619)
                      |.+....|.    .++.-..|++|.+++|.+.-.    +..+         ..+-|.|+......|++...+        
T Consensus       102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l  181 (388)
T COG5238         102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL  181 (388)
T ss_pred             cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence            987765544    446778999999999976421    1111         124466777777777665433        


Q ss_pred             -CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh------hhhhcCC
Q 007082          229 -NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF------CFLTQMK  301 (619)
Q Consensus       229 -~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~  301 (619)
                       ...+|+++.+..|.|..-  ++                 ..........+.+|+.||+.+|.++..      ..+...+
T Consensus       182 ~sh~~lk~vki~qNgIrpe--gv-----------------~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPE--GV-----------------TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             HhhcCceeEEeeecCcCcc--hh-----------------HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence             223556666665555410  00                 001111222445555566665555433      2344455


Q ss_pred             CCCEEeCcCCCCChhHHHHHHhc-----CCCCcEEEccCCCCCCch------HHHHHhcCCCCcEEEccCCCCCh
Q 007082          302 ALEHLDLSSSMIGDDSVEMVACV-----GANLRNLNLSNTRFSSAG------VGILAGHLPNLEILSLSGTQIDD  365 (619)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~------~~~~~~~~~~L~~L~l~~n~l~~  365 (619)
                      .|+.|.+..|.++..+...+...     .|+|..|...+|.+.+..      +...-+.+|-|..|.+.+|.+..
T Consensus       243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            67778887777766555444322     266777777766543311      11122345666666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=8.6e-08  Score=88.21  Aligned_cols=61  Identities=20%  Similarity=0.167  Sum_probs=32.1

Q ss_pred             CCCcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChh-HHHHHHhcCCCCcEEEccCCCCCC
Q 007082          279 SLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSS  340 (619)
Q Consensus       279 ~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~  340 (619)
                      +++..+-+..|.+...   .....++.+-.|+++.+++.+- ....+.++ +.|..|.++++.+.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f-~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF-PQLVDLRVSENPLSD  263 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC-chhheeeccCCcccc
Confidence            4555555555544333   3344455555666666665542 23344444 666666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.48  E-value=4.9e-07  Score=97.51  Aligned_cols=228  Identities=18%  Similarity=0.263  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhcc-----ChhhHHHhcCCccEEeccCCCCCChH
Q 007082            7 SELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-----FPSLLEVFKHNAEAIELRGENSVDAE   81 (619)
Q Consensus         7 ~~l~~~c~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-----~p~~~~~~~~~l~~L~Ls~~~~~~~~   81 (619)
                      +++.+...+.+...   +..-.+.+ .-..+++.-.+.+...|......     .+.....|  +++..++.+.. ....
T Consensus         3 ~sl~~~a~~~ia~~---i~ng~y~~-~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f--~ltki~l~~~~-~~~~   75 (699)
T KOG3665|consen    3 SSLADIACQKIAEY---IQNGSYNN-LQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKF--NLTKIDLKNVT-LQHQ   75 (699)
T ss_pred             CchhhhhHHHHHHH---HhcCCccc-cceecChhhhHHHHHHHHhccCCCchhHHHhhhhhh--eeEEeecccee-cchh
Confidence            45555555544443   22222222 23345556666666666543111     11112223  58888888766 4455


Q ss_pred             HHHHHhcCCCccEEEcCCCCCCChHH-----------HHHhh---CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEE
Q 007082           82 WMAYLGAFRYLRSLNVADCRRVTSSA-----------LWALT---GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLW  146 (619)
Q Consensus        82 ~~~~~~~~~~L~~L~L~~~~~~~~~~-----------~~~l~---~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~  146 (619)
                      ....+.... |++|.|.+...+....           +..+.   .-.+|++|+++|...+....+..++ .+|.|++|.
T Consensus        76 ~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~  154 (699)
T KOG3665|consen   76 TLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLV  154 (699)
T ss_pred             HHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEE
Confidence            555555555 8888888754222111           11111   2258999999998777777777887 589999999


Q ss_pred             ccCCCCChh-HHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCc-hhhHhhcCCCCCCEEecCCCCC
Q 007082          147 LSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGV  224 (619)
Q Consensus       147 L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l  224 (619)
                      +.+-.+... ......++|+|..||+++++++..  ..++++++|+.|.+.+-.+.. ..-..+-++++|+.||++....
T Consensus       155 i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  155 ISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             ecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            998766443 345667899999999999998876  678899999999988866653 3334566788888888887654


Q ss_pred             CCCC-----------CCCCCcEEEcCCcccc
Q 007082          225 TKLP-----------NISSLECLNLSNCTID  244 (619)
Q Consensus       225 ~~l~-----------~l~~L~~L~l~~~~l~  244 (619)
                      ..-+           .+|+|+.||.|+..+.
T Consensus       233 ~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  233 NDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             ccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            4211           3667777777766554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=1e-08  Score=105.02  Aligned_cols=123  Identities=25%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082          141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA  220 (619)
Q Consensus       141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  220 (619)
                      .|...+.++|.+... ..++.-++.|+.|+|++|++...  +.+..|++|++|||+.|.+....--....+. |..|.++
T Consensus       165 ~L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            344445555544422 23444455566666666665544  2455566666666666655432222223333 5555555


Q ss_pred             CCCCCC---CCCCCCCcEEEcCCcccccccc--ccCCCCCccEEeccCcccc
Q 007082          221 WTGVTK---LPNISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTTFI  267 (619)
Q Consensus       221 ~n~l~~---l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~  267 (619)
                      +|.++.   +.++.+|+.||+++|-+....+  .+..+..|+.|.+.||.+.
T Consensus       241 nN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            555443   3345555555555555443222  1224445555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.39  E-value=6.3e-07  Score=96.67  Aligned_cols=139  Identities=19%  Similarity=0.295  Sum_probs=88.8

Q ss_pred             CCccEEeccCCCCCChHHHHHHhc-CCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGA-FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      .+|++||++|...+...|+..++. +|.|++|.+++-....+.......++|+|+.||+|++ .+++.  ..++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence            468888888877777777777765 6888888888755333333333447788888888887 44442  5566777888


Q ss_pred             EEEccCCCCCh-hHHHHhhcCCCCCEEEcCCCCCChh---HH---HHhhcCCCCCEEEccCCccCchhhH
Q 007082          144 KLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVTDL---VL---RSLQVLTKLEYLDLWGSQVSNRGAA  206 (619)
Q Consensus       144 ~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~---~~---~~~~~l~~L~~L~l~~n~i~~~~~~  206 (619)
                      .|.+.+-.+.. .....+-.+++|+.||++.......   .-   +.-..+|+|+.||.+++.+....-.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE  268 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence            87777766654 2233455778888888876542221   11   1113467778888777776654433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.23  E-value=1.9e-06  Score=91.87  Aligned_cols=115  Identities=33%  Similarity=0.412  Sum_probs=69.8

Q ss_pred             HHhcCCCccEEEcCCCCCCChHHHHH-hhCCCCCCEEeCCCC-CCCChhh---HhhhcCCCCCcEEEccCCC-CChhHHH
Q 007082           85 YLGAFRYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRC-VKVTDAG---MKHLLSISTLEKLWLSETG-LTADGIA  158 (619)
Q Consensus        85 ~~~~~~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~L~~~-~~l~~~~---~~~l~~l~~L~~L~L~~~~-~~~~~~~  158 (619)
                      ....++.|+.|.+.+|..+.+..... ...+++|+.|+++++ .......   ......+++|+.|+++.+. +++....
T Consensus       183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            34456777777777776666554433 346777888777762 2222111   1222356777777777776 6666555


Q ss_pred             Hhhc-CCCCCEEEcCCCC-CChhHHHHh-hcCCCCCEEEccCCc
Q 007082          159 LLSS-LQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDLWGSQ  199 (619)
Q Consensus       159 ~~~~-l~~L~~L~L~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~  199 (619)
                      .++. |++|++|.+.++. +++.....+ ..++.|++|+++++.
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            5553 7777777766666 555544444 356777777777664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.08  E-value=5.7e-06  Score=72.28  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=78.3

Q ss_pred             CCCEEecCCCCCC---CCCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccC
Q 007082          213 RLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN  288 (619)
Q Consensus       213 ~L~~L~l~~n~l~---~l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  288 (619)
                      +...+++++|.+.   .+|.++.|.+|.+.+|.|+.+.+.+. ..++|+.|.+.+|.+..+........|++|++|.+-+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            4556667777655   35667788889999999998888877 6778899999998888766666667888888888888


Q ss_pred             CCcchh-----hhhhcCCCCCEEeCcCCCCCh
Q 007082          289 SSLSRF-----CFLTQMKALEHLDLSSSMIGD  315 (619)
Q Consensus       289 n~l~~~-----~~~~~~~~L~~L~l~~n~l~~  315 (619)
                      |.++..     ..+..+++|+.||+.+-...+
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E  154 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE  154 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence            887665     356678888888888755443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.08  E-value=3e-07  Score=74.82  Aligned_cols=88  Identities=22%  Similarity=0.208  Sum_probs=43.4

Q ss_pred             CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082          373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL  452 (619)
Q Consensus       373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  452 (619)
                      ....|+..+|++|.+....+.            .-..++.++.|++++|.++ .+|..+..++.|+.|+++.|.+... |
T Consensus        51 ~~~el~~i~ls~N~fk~fp~k------------ft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p  116 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKK------------FTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-P  116 (177)
T ss_pred             CCceEEEEecccchhhhCCHH------------Hhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-h
Confidence            334444445555555444333            2233345555555555555 3344455555555555555555543 2


Q ss_pred             HhhcCCCCCCEEEcCCCccCch
Q 007082          453 HQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       453 ~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      ..+..+.++-.|+..+|.+...
T Consensus       117 ~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  117 RVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             HHHHHHHhHHHhcCCCCccccC
Confidence            3333355555555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.07  E-value=4.4e-07  Score=73.84  Aligned_cols=88  Identities=17%  Similarity=0.304  Sum_probs=42.0

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082          352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  431 (619)
Q Consensus       352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  431 (619)
                      .|...++++|.+...++..-..++.++.|++++|.++.. |.            .+..++.|+.|+++.|.+. ..|..+
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv-Pe------------E~Aam~aLr~lNl~~N~l~-~~p~vi  119 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV-PE------------ELAAMPALRSLNLRFNPLN-AEPRVI  119 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc-hH------------HHhhhHHhhhcccccCccc-cchHHH
Confidence            344445555555444443333444555555555555432 22            2445555555555555554 334444


Q ss_pred             cCCCCCCEEecCCCCCCchhHH
Q 007082          432 STFKELIHLSLRNASLTDVSLH  453 (619)
Q Consensus       432 ~~l~~L~~L~L~~n~l~~~~~~  453 (619)
                      ..+.++-.|+..+|.+..+..+
T Consensus       120 ~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  120 APLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             HHHHhHHHhcCCCCccccCcHH
Confidence            4455555555555555444333

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.01  E-value=4.5e-06  Score=72.92  Aligned_cols=107  Identities=22%  Similarity=0.350  Sum_probs=81.2

Q ss_pred             cCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchH-HHHHhcCCCCcEE
Q 007082          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV-GILAGHLPNLEIL  356 (619)
Q Consensus       278 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L  356 (619)
                      ......+|+++|.+.....|..++.|.+|.+++|.|+...+..-... ++|+.|.+.+|.+...+- ..+ ..||+|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPL-ASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc-cccceEEecCcchhhhhhcchh-ccCCcccee
Confidence            45677889999999988999999999999999999988766544444 899999999998765322 223 458899999


Q ss_pred             EccCCCCChHHH---HHhhCCCCCcEEEccCCc
Q 007082          357 SLSGTQIDDYAI---SYMSMMPSLKFIDISNTD  386 (619)
Q Consensus       357 ~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~  386 (619)
                      .+-+|.++....   ..+..+|+|+.||+.+-.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            999988776432   234467888888876543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.96  E-value=9.2e-06  Score=86.55  Aligned_cols=89  Identities=28%  Similarity=0.370  Sum_probs=61.3

Q ss_pred             hhhcCCCCCEEeCcCCC-CChhHHHHHHhcCCCCcEEEccCCC-CCCchHHHHHhcCCCCcEEEccCCCCC-hH-HHHHh
Q 007082          296 FLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQID-DY-AISYM  371 (619)
Q Consensus       296 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~-~~~~~  371 (619)
                      ....+++|+.++++++. +++.....+...|++|+.|.+.+|. +++.+...+...++.|++|++++|... +. .....
T Consensus       238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~  317 (482)
T KOG1947|consen  238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL  317 (482)
T ss_pred             hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence            34556778888888766 7777777777766888888877776 777777777777888888888876542 22 22223


Q ss_pred             hCCCCCcEEEccC
Q 007082          372 SMMPSLKFIDISN  384 (619)
Q Consensus       372 ~~~~~L~~L~L~~  384 (619)
                      .++++|+.|.+..
T Consensus       318 ~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  318 KNCPNLRELKLLS  330 (482)
T ss_pred             HhCcchhhhhhhh
Confidence            4567766655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=1.8e-05  Score=52.09  Aligned_cols=38  Identities=32%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082          435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       435 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  473 (619)
                      ++|++|++++|+++.+.+ .++++++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            356667777776666433 46667777777777776664

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=2.1e-05  Score=51.79  Aligned_cols=37  Identities=35%  Similarity=0.510  Sum_probs=20.1

Q ss_pred             cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082          412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  449 (619)
Q Consensus       412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  449 (619)
                      +|++|++++|++++ +|..++.+++|+.|++++|++++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence            45566666666652 34445566666666666666554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.54  E-value=0.00029  Score=70.27  Aligned_cols=138  Identities=12%  Similarity=0.097  Sum_probs=77.0

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEI  355 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~  355 (619)
                      .+..++.|++++|.++.++.  -..+|++|.+++|.--...+..+.   ++|+.|++++| .+...        .++|+.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~sL--------P~sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEISGL--------PESVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccccc--------ccccce
Confidence            46778888888887777652  334688888877432222333332   67888888877 44321        346777


Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCC
Q 007082          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  435 (619)
Q Consensus       356 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  435 (619)
                      |++.++......    .-.++|+.|.+.+++.......            .-.--++|++|++++|... ..|..+  ..
T Consensus       117 L~L~~n~~~~L~----~LPssLk~L~I~~~n~~~~~~l------------p~~LPsSLk~L~Is~c~~i-~LP~~L--P~  177 (426)
T PRK15386        117 LEIKGSATDSIK----NVPNGLTSLSINSYNPENQARI------------DNLISPSLKTLSLTGCSNI-ILPEKL--PE  177 (426)
T ss_pred             EEeCCCCCcccc----cCcchHhheecccccccccccc------------ccccCCcccEEEecCCCcc-cCcccc--cc
Confidence            777765543211    1124566777644321100000            0000147888888887654 233333  25


Q ss_pred             CCCEEecCCCC
Q 007082          436 ELIHLSLRNAS  446 (619)
Q Consensus       436 ~L~~L~L~~n~  446 (619)
                      +|+.|+++.+.
T Consensus       178 SLk~L~ls~n~  188 (426)
T PRK15386        178 SLQSITLHIEQ  188 (426)
T ss_pred             cCcEEEecccc
Confidence            78888877663

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.53  E-value=0.00035  Score=69.76  Aligned_cols=13  Identities=15%  Similarity=0.291  Sum_probs=6.8

Q ss_pred             CCCCCCEEeCCCC
Q 007082          113 GMTCLKELDLSRC  125 (619)
Q Consensus       113 ~~~~L~~L~L~~~  125 (619)
                      .|.+++.|++++|
T Consensus        50 ~~~~l~~L~Is~c   62 (426)
T PRK15386         50 EARASGRLYIKDC   62 (426)
T ss_pred             HhcCCCEEEeCCC
Confidence            3455555555555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.52  E-value=7.3e-05  Score=63.47  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             HhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCC
Q 007082           86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN  165 (619)
Q Consensus        86 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~  165 (619)
                      |.++++|+.+.+.. . +......+|.++++|+.+.+..+  +.......|.+++.|+.+.+.+ .+.......|..+++
T Consensus         8 F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            55666777777764 2 44444455667777777777663  4444455566676777777754 444444456666777


Q ss_pred             CCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCC
Q 007082          166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL  214 (619)
Q Consensus       166 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L  214 (619)
                      |+.+++..+ +..+....|.++ +|+.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            777777654 555555566666 777777654 3444555566666555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=6.2e-05  Score=66.04  Aligned_cols=84  Identities=31%  Similarity=0.528  Sum_probs=71.7

Q ss_pred             CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhC-CCCCCEEeCCCCCCCChhhHhhhcCCCCCcE
Q 007082           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTCLKELDLSRCVKVTDAGMKHLLSISTLEK  144 (619)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~  144 (619)
                      .++.+|-+++. +..+-.+.+.+++.++.|.+.+|+.+.+..+..+++ .++|+.|++++|..+++.+...+..+++|+.
T Consensus       102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            48888888877 777788888899999999999999888888888875 4799999999999999999888888899988


Q ss_pred             EEccCC
Q 007082          145 LWLSET  150 (619)
Q Consensus       145 L~L~~~  150 (619)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            888764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.49  E-value=0.00013  Score=61.95  Aligned_cols=119  Identities=19%  Similarity=0.268  Sum_probs=46.4

Q ss_pred             hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082          348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  427 (619)
Q Consensus       348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  427 (619)
                      ..+++|+.+.+.. .+.......|.++++|+.+.+.++ +......            .|.++++|+.+.+.+ .+....
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~------------~F~~~~~l~~i~~~~-~~~~i~   73 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN------------AFSNCKSLESITFPN-NLKSIG   73 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT------------TTTT-TT-EEEEETS-TT-EE-
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee------------eeecccccccccccc-cccccc
Confidence            3455566666553 344444445555656666666553 3333222            455665566666654 332233


Q ss_pred             cccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082          428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS  484 (619)
Q Consensus       428 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  484 (619)
                      ...|..+++|+.+++..+ ++.+....|.++ .|+.+.+.. .+.......|..+++
T Consensus        74 ~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   74 DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             cccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            344555666666666544 444444555555 566666554 333333334444433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.42  E-value=1.7e-05  Score=81.99  Aligned_cols=41  Identities=34%  Similarity=0.408  Sum_probs=18.9

Q ss_pred             CCCCEEeCcCCCCChhHHHHHHhc---CCCCcEEEccCCCCCCc
Q 007082          301 KALEHLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSA  341 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~  341 (619)
                      ..++.++++.|.+++.....+...   ++.++.+.+++|.+.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            344555555555554433332211   13455555555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.28  E-value=7.2e-05  Score=68.52  Aligned_cols=102  Identities=26%  Similarity=0.414  Sum_probs=52.8

Q ss_pred             CCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCC--ccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCC-C
Q 007082          350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT--DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-A  426 (619)
Q Consensus       350 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~  426 (619)
                      +..|+.|.+.+..++..  ..+..+++|+.|.++.|  .+.+-++.            -...+++|++|++++|++.. .
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v------------l~e~~P~l~~l~ls~Nki~~ls  107 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV------------LAEKAPNLKVLNLSGNKIKDLS  107 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee------------hhhhCCceeEEeecCCcccccc
Confidence            44555555555555433  23445666777777777  33333322            23445677777777776653 1


Q ss_pred             CcccccCCCCCCEEecCCCCCCch---hHHhhcCCCCCCEEE
Q 007082          427 TLFPLSTFKELIHLSLRNASLTDV---SLHQLSSLSKLTNLS  465 (619)
Q Consensus       427 ~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~  465 (619)
                      ....+..+.+|..|++.+|..+..   -...|.-+++|++||
T Consensus       108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            112233455666666666654332   223445556665554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.22  E-value=0.0001  Score=67.52  Aligned_cols=60  Identities=27%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             CCCcEEeccCCCcchhhhhhcCCCCCEEeCcCC--CCChhHHHHHHhcCCCCcEEEccCCCCC
Q 007082          279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS--MIGDDSVEMVACVGANLRNLNLSNTRFS  339 (619)
Q Consensus       279 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~L~~L~L~~n~l~  339 (619)
                      ..|+.+++.+..++.+..+..+++|+.|.++.|  ++.+... .+...+|+|+++++++|++.
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccc
Confidence            445555555555555555555666666666666  3322221 12222255555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=8.8e-05  Score=68.20  Aligned_cols=82  Identities=21%  Similarity=0.215  Sum_probs=42.1

Q ss_pred             CccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHH-HHHHhcCCCCcEEEc
Q 007082          255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNL  333 (619)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L  333 (619)
                      +.++|++.||.+.++.-   ...++.|+.|.|+-|.++.+..+..|++|++|+|..|.|.+..- ..+..+ ++|+.|+|
T Consensus        20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhhHhh
Confidence            34444444544444332   12445555666666666555555666666666666665554322 223333 56666666


Q ss_pred             cCCCCCC
Q 007082          334 SNTRFSS  340 (619)
Q Consensus       334 ~~n~l~~  340 (619)
                      ..|...+
T Consensus        96 ~ENPCc~  102 (388)
T KOG2123|consen   96 DENPCCG  102 (388)
T ss_pred             ccCCccc
Confidence            5555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=7.3e-05  Score=68.70  Aligned_cols=101  Identities=23%  Similarity=0.216  Sum_probs=72.0

Q ss_pred             cCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (619)
Q Consensus       278 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  357 (619)
                      +.+.+.|++.+|.+..+.....++.|+.|.|+-|.|+...  .+..+ .+|++|.|..|.|.+..--.+..++|+|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rC-trLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRC-TRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHH-HHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4567778888888888888888888888888888887543  33443 78888888888887765555557788888888


Q ss_pred             ccCCCCChHHH-----HHhhCCCCCcEEE
Q 007082          358 LSGTQIDDYAI-----SYMSMMPSLKFID  381 (619)
Q Consensus       358 l~~n~l~~~~~-----~~~~~~~~L~~L~  381 (619)
                      |..|.-.+..+     ..+.-+|+|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            88876443322     2345677777765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.08  E-value=6e-05  Score=78.05  Aligned_cols=108  Identities=31%  Similarity=0.372  Sum_probs=48.5

Q ss_pred             ccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhcC----C-CCCcEEEccCCCCChhHH----H
Q 007082           92 LRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLLS----I-STLEKLWLSETGLTADGI----A  158 (619)
Q Consensus        92 L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~~----l-~~L~~L~L~~~~~~~~~~----~  158 (619)
                      +..|.|.+|. +.+.....    +...+.|+.|++++| .+.+.....+++    . ..|+.|++..|.++....    +
T Consensus        89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            4555555554 33333332    234455666666665 334444333331    1 334445555555443322    2


Q ss_pred             HhhcCCCCCEEEcCCCCCChh----HHHHhh----cCCCCCEEEccCCccC
Q 007082          159 LLSSLQNLSVLDLGGLPVTDL----VLRSLQ----VLTKLEYLDLWGSQVS  201 (619)
Q Consensus       159 ~~~~l~~L~~L~L~~n~~~~~----~~~~~~----~l~~L~~L~l~~n~i~  201 (619)
                      .+.....++.++++.|.+...    .+..+.    ...++++|++.++.++
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            333445555555555554211    111222    2445555555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.0018  Score=57.08  Aligned_cols=82  Identities=27%  Similarity=0.365  Sum_probs=59.7

Q ss_pred             CccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcC-CCCCcEEEccCC-CCChhHHHHhhcCCCCCE
Q 007082           91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSET-GLTADGIALLSSLQNLSV  168 (619)
Q Consensus        91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~-l~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~  168 (619)
                      .++.++-+++. |...++..+.+++.++.|.+.+|..+.+...+.+++ .++|+.|++++| .|++.....+..+++|+.
T Consensus       102 ~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            46667777765 777777777888888888888887777777776664 577777777776 577666666677777777


Q ss_pred             EEcCC
Q 007082          169 LDLGG  173 (619)
Q Consensus       169 L~L~~  173 (619)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            76654

>TIGR00864 PCC polycystin cation channel protein

Probab=96.19  E-value=0.003  Score=76.14  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=49.0

Q ss_pred             EcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeee--ecccccccCCCCC
Q 007082          465 SIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV--WHELSVICPSDQI  526 (619)
Q Consensus       465 ~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  526 (619)
                      ||++|+|+.+.+..|..+++|+.|+|++|||.|+|.+.||.+|+..-.+  .......|..|..
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~   64 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGA   64 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChH
Confidence            5889999988888888899999999999999999999999999755432  2233455666553

Note: this model has been restricted to the amino half because for technical reasons.

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.77  E-value=0.078  Score=30.17  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=10.2

Q ss_pred             CCccEEEcCCCCCCChHHHHHh
Q 007082           90 RYLRSLNVADCRRVTSSALWAL  111 (619)
Q Consensus        90 ~~L~~L~L~~~~~~~~~~~~~l  111 (619)
                      ++|++|+|++|..+++..+..+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            4444444444444444444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.70  E-value=0.042  Score=29.84  Aligned_cols=12  Identities=33%  Similarity=0.382  Sum_probs=7.2

Q ss_pred             CCEEEcCCCccC
Q 007082          461 LTNLSIRDAVLT  472 (619)
Q Consensus       461 L~~L~L~~n~l~  472 (619)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            555666666655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.66  E-value=0.028  Score=30.53  Aligned_cols=6  Identities=33%  Similarity=0.551  Sum_probs=2.2

Q ss_pred             EEccCC
Q 007082          416 LNLEQT  421 (619)
Q Consensus       416 L~L~~n  421 (619)
                      |+|++|
T Consensus         5 Ldls~n   10 (22)
T PF00560_consen    5 LDLSGN   10 (22)
T ss_dssp             EEETSS
T ss_pred             EECCCC
Confidence            333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.60  E-value=0.077  Score=30.18  Aligned_cols=24  Identities=46%  Similarity=0.793  Sum_probs=19.8

Q ss_pred             CCCCCEEeCCCCCCCChhhHhhhc
Q 007082          114 MTCLKELDLSRCVKVTDAGMKHLL  137 (619)
Q Consensus       114 ~~~L~~L~L~~~~~l~~~~~~~l~  137 (619)
                      |++|++|+|++|..+++.++..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            578999999999888888877664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.62  E-value=0.12  Score=26.00  Aligned_cols=12  Identities=42%  Similarity=0.581  Sum_probs=4.0

Q ss_pred             CcEEEcCCcccc
Q 007082          233 LECLNLSNCTID  244 (619)
Q Consensus       233 L~~L~l~~~~l~  244 (619)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.07  E-value=0.29  Score=27.70  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=8.9

Q ss_pred             CCCEEecCCCCCCchhHHh
Q 007082          436 ELIHLSLRNASLTDVSLHQ  454 (619)
Q Consensus       436 ~L~~L~L~~n~l~~~~~~~  454 (619)
                      +|+.|+|++|+++.+++..
T Consensus         3 ~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCEEECCCCcCCcCCHHH
Confidence            4445555555544444333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.07  E-value=0.29  Score=27.70  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=8.9

Q ss_pred             CCCEEecCCCCCCchhHHh
Q 007082          436 ELIHLSLRNASLTDVSLHQ  454 (619)
Q Consensus       436 ~L~~L~L~~n~l~~~~~~~  454 (619)
                      +|+.|+|++|+++.+++..
T Consensus         3 ~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCEEECCCCcCCcCCHHH
Confidence            4445555555544444333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.76  E-value=0.26  Score=27.32  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=9.9

Q ss_pred             CCCCEEeCcCCCCChhHHHHH
Q 007082          301 KALEHLDLSSSMIGDDSVEMV  321 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~  321 (619)
                      ++|++|++++|.+++.....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            455555555555555544443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.72  E-value=0.31  Score=27.57  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=12.9

Q ss_pred             CCCcEEEcCCccccccccccC
Q 007082          231 SSLECLNLSNCTIDSILEGNE  251 (619)
Q Consensus       231 ~~L~~L~l~~~~l~~l~~~~~  251 (619)
                      ++|+.|++++|.+..+|...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.72  E-value=0.31  Score=27.57  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=12.9

Q ss_pred             CCCcEEEcCCccccccccccC
Q 007082          231 SSLECLNLSNCTIDSILEGNE  251 (619)
Q Consensus       231 ~~L~~L~l~~~~l~~l~~~~~  251 (619)
                      ++|+.|++++|.+..+|...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666665543

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=88.39  E-value=0.15  Score=39.98  Aligned_cols=30  Identities=7%  Similarity=0.060  Sum_probs=15.2

Q ss_pred             Cccccccceeecccccccccccceeecccc
Q 007082          553 SHSFLGGVLLFSMRYSFKCIHLTFFVCFSK  582 (619)
Q Consensus       553 ~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~  582 (619)
                      ....|+|+++++++++++++.+++||+++|
T Consensus        64 s~gaiagi~vg~~~~v~~lv~~l~w~f~~r   93 (96)
T PTZ00382         64 STGAIAGISVAVVAVVGGLVGFLCWWFVCR   93 (96)
T ss_pred             ccccEEEEEeehhhHHHHHHHHHhheeEEe
Confidence            334477777776655544333223443333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.19  E-value=0.32  Score=26.89  Aligned_cols=17  Identities=59%  Similarity=0.769  Sum_probs=6.6

Q ss_pred             CCCcEEEccCCCCChHH
Q 007082          351 PNLEILSLSGTQIDDYA  367 (619)
Q Consensus       351 ~~L~~L~l~~n~l~~~~  367 (619)
                      ++|++|++++|.+++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            34444444444444433

...

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=87.62  E-value=0.17  Score=42.57  Aligned_cols=20  Identities=15%  Similarity=-0.064  Sum_probs=12.3

Q ss_pred             cccccceeeccccccccccc
Q 007082          555 SFLGGVLLFSMRYSFKCIHL  574 (619)
Q Consensus       555 ~~i~~v~~~~~~~~~~~~~~  574 (619)
                      ..++|++||+.+.+++++++
T Consensus        49 nIVIGvVVGVGg~ill~il~   68 (154)
T PF04478_consen   49 NIVIGVVVGVGGPILLGILA   68 (154)
T ss_pred             cEEEEEEecccHHHHHHHHH
Confidence            34788888876655544443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.84  E-value=0.017  Score=52.25  Aligned_cols=64  Identities=11%  Similarity=0.089  Sum_probs=31.9

Q ss_pred             hccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      |+-++.|..|+++.|++. ..|..+.+...+..+++.+|..+. .|..+...++++++++.+|.+.
T Consensus        61 ~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhccCcch
Confidence            333444555555555544 344555555555555555554444 2344555555555555555543

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=82.35  E-value=0.41  Score=49.25  Aligned_cols=49  Identities=20%  Similarity=0.187  Sum_probs=0.0

Q ss_pred             cccceeecccccccccccceeecccccchhhccC-HHHHHHhhhccccccC
Q 007082          557 LGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYS-REELLELQYSSLSLAR  606 (619)
Q Consensus       557 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~  606 (619)
                      ++++++++++++++++++ +++|++++++|+++. +.+...-.|..+....
T Consensus       354 ~l~vVlgvavlivVv~vi-v~vc~~~rrrR~~~~~~~~~~~~~YtsLPtNE  403 (439)
T PF02480_consen  354 LLGVVLGVAVLIVVVGVI-VWVCLRCRRRRRQRDKILNPFSPVYTSLPTNE  403 (439)
T ss_dssp             ---------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHH-hheeeeehhcccccccccCcCCCccccCCCCC
Confidence            344444444333333332 556666666665555 3333333333334433

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=80.89  E-value=0.13  Score=41.97  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=15.7

Q ss_pred             cccceeecccccccccccceeecccccchh
Q 007082          557 LGGVLLFSMRYSFKCIHLTFFVCFSKTDQR  586 (619)
Q Consensus       557 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~r  586 (619)
                      |++|++|+++.++.++++ ++||++|+++|
T Consensus        66 i~~Ii~gv~aGvIg~Ill-i~y~irR~~Kk   94 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIILL-ISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHS--
T ss_pred             eeehhHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            677777777655554443 45555444443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.41  E-value=2.8  Score=24.22  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=14.0

Q ss_pred             CCCCEEeCcCCCCChhHHHHHH
Q 007082          301 KALEHLDLSSSMIGDDSVEMVA  322 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~  322 (619)
                      ++|++|+|++|.+++.+...+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHH
Confidence            4566777777777666655544

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=80.01  E-value=0.53  Score=31.92  Aligned_cols=18  Identities=0%  Similarity=-0.060  Sum_probs=16.1

Q ss_pred             CccCCHHHHHHHHHhCCC
Q 007082          493 GWLLTEDAILQFCKMHPR  510 (619)
Q Consensus       493 n~~~~~~~~~~~~~~~~~  510 (619)
                      |||.|+|.+.++..|...
T Consensus         1 NP~~CdC~l~~~~~w~~~   18 (51)
T smart00082        1 NPFICDCELRWLLRWLQA   18 (51)
T ss_pred             CCccCcCCchHHHHHHHh
Confidence            899999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	619
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		8e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-07
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		1e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-06
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-04
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		2e-04

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 54/317 (17%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
           DG+  L+   NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     
Sbjct: 57  DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+  N   T +  L N+++L  L LS+ TI  I             +L+G T + +    
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                  LSF   S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  
Sbjct: 156 -------LSF---SSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392
           +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I     
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 QVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
             G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L  
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 314
Query: 445 ASLTDVSLHQLSSLSKL 461
            +++D+S   +SSL+KL
Sbjct: 315 NNISDIS--PVSSLTKL 329

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 54/317 (17%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
           DG+  L+   NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     
Sbjct: 57  DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+  N   T +  L N+++L  L LS+ TI  I             +L+G T + +    
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                     L+ S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  
Sbjct: 156 ----------LNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392
           +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I     
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 QVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
             G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L  
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 314
Query: 445 ASLTDVSLHQLSSLSKL 461
            +++D+S   +SSL+KL
Sbjct: 315 NNISDIS--PVSSLTKL 329

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 30  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 87
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 88  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 140
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 141 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 197
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 198 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 251
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
             I       G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K 
Sbjct: 252 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 309
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
           L +L+L   +++D+S   +SSL+KL
Sbjct: 310 LTYLTLYFNNISDIS--PVSSLTKL 332

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 31  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 88
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 89  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 141
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 198
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 199 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
             I       G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K 
Sbjct: 253 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 310
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
           L +L+L   +++D+S   +SSL+KL
Sbjct: 311 LTYLTLYFNNISDIS--PVSSLTKL 333

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 54/317 (17%)
Query: 155 DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPR 213
           DG+  L+   NL+ ++     +TD+    L+ LTKL  + +  +Q+++    A L     
Sbjct: 57  DGVEYLN---NLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTG 111
Query: 214 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+  N   T +  L N+++L  L LS+ TI  I             +L+G T + +    
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI------------SALSGLTSLQQ---- 155
Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                  LSF   S++ ++    L  +  LE LD+SS+ + D SV  +A +  NL +L  
Sbjct: 156 -------LSF---SSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIA 202
Query: 334 SNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392
           +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N  I     
Sbjct: 203 TNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
Query: 393 QVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
             G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K L +L+L  
Sbjct: 257 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF 314
Query: 445 ASLTDVSLHQLSSLSKL 461
            +++D+S   +SSL+KL
Sbjct: 315 NNISDIS--PVSSLTKL 329

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 26  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 83
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 84  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 193
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 194 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 247
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
             I       G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K 
Sbjct: 248 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 305
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
           L +L+L   +++D+S   +SSL+KL
Sbjct: 306 LTYLTLYFNNISDIS--PVSSLTKL 328

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 56/325 (17%)
Query: 171 LGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
           LG   VTD V ++ L  +T L+  D  G + S  G   L    +++F N   T +T L N
Sbjct: 26  LGKTNVTDTVSQTDLDQVTTLQA-DRLGIK-SIDGVEYLNNLTQINFSNNQLTDITPLKN 83
Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINEREAFL----------YIET 278
           ++ L  + ++N  I  I        PLA ++ L G T  N +   +           +E 
Sbjct: 84  LTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 136
Query: 279 SLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDLSSSMIGDDSVEMVACVG 325
           S  +  D+S     +SL +  F         L  +  LE LD+SS+ + D SV  +A + 
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL- 193
Query: 326 ANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
            NL +L  +N + S    +GIL     NL+ LSL+G Q+ D  I  ++ + +L  +D++N
Sbjct: 194 TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 247
Query: 385 TDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 436
             I       G    T+L L      +++ L  L  L  L L + Q+ D  + P+S  K 
Sbjct: 248 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKN 305
Query: 437 LIHLSLRNASLTDVSLHQLSSLSKL 461
           L +L+L   +++D+S   +SSL+KL
Sbjct: 306 LTYLTLYFNNISDIS--PVSSLTKL 328

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 156 GIALLSSLQNLSVLDLG--GLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPR 213
           G   L +L+NL  LDL    +  +D     L+ L+ L+ L+L  ++  +      K  P+
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401
Query: 214 LSFLNLAWTGV------TKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTF 266
           L  L+LA+T +      +   N+  L+ LNLS+  +D   E   +  P L  ++L G  F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Query: 267 -------INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 319
                   N  +    +E  +LSF D+S  S+ +  F T +K + H+DLS + +   S+E
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS--SIDQHAF-TSLKMMNHVDLSHNRLTSSSIE 518
Query: 320 MVA 322
            ++
Sbjct: 519 ALS 521

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           L++ ++ ++    L  +  +  L+LS + + +  V  +A + + ++ L+L++T+ +   V
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQS-IKTLDLTSTQITD--V 122
Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403
             LAG L NL++L L   QI +  IS ++ + +L+++ I N  +                
Sbjct: 123 TPLAG-LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS--------------D 165
Query: 404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463
           LT L NL+ L  L  +  ++SD  + PL++   LI + L+N  ++DVS   L++ S L  
Sbjct: 166 LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221
Query: 464 LSIRDAVLTN 473
           +++ +  +TN
Sbjct: 222 VTLTNQTITN 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	619
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-30
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-20
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-17
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-15
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  131 bits (330), Expect = 2e-32
 Identities = 99/521 (19%), Positives = 196/521 (37%), Gaps = 44/521 (8%)

Query: 18  CQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENS 77
           C+S   +++W R++  +    A    +++R     ++    L          +   G   
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRF--PKVRSVELKGKPHFADFNLVPDGWGG 91

Query: 78  VDAEWMAYLGA-FRYLRSLNVADCRRVTSSALWAL-TGMTCLKELDLSRCVKVTDAGMKH 135
               W+  + + + +L  + +     VT   L  +       K L LS C   +  G+  
Sbjct: 92  YVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150

Query: 136 LLSI-STLEKLWLSETGLTADGIALLSSL----QNLSVLDLGGLP--VTDLVLRSL-QVL 187
           + +    L++L L E+ +       LS       +L  L++  L   V+   L  L    
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 188 TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSIL 247
             L+ L L  +    + A +L+  P+L  L          P++ S   + LS C     L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFCFLTQMKALEHL 306
            G  +         A    +    + L   T+L LS+  V +  L +   L Q   L+ L
Sbjct: 271 SGFWD------AVPAYLPAVYSVCSRL---TTLNLSYATVQSYDLVK--LLCQCPKLQRL 319

Query: 307 DLSSSMIGDDSVEMVACVGANLRNLNLS---------NTRFSSAGVGILAGHLPNLEILS 357
            +    I D  +E++A    +LR L +          N   +  G+  ++   P LE + 
Sbjct: 320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378

Query: 358 LSGTQIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL-QNLNHLER 415
               Q+ + A+  ++   P++    +   + K          D  +   A+ ++   L R
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD--IGFGAIVEHCKDLRR 436

Query: 416 LNLEQTQVSDATLFPLSTF-KELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRDAVLTN 473
           L+L    ++D     + T+ K++  LS+  A  +D+ +H + S    L  L IRD    +
Sbjct: 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

Query: 474 SGLGS-FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV 513
             L +      +++ L +     ++  A     +  P++ V
Sbjct: 496 KALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLNV 535

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  125 bits (316), Expect = 1e-30
 Identities = 77/527 (14%), Positives = 159/527 (30%), Gaps = 64/527 (12%)

Query: 23  SVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEW 82
            +    R+  ++        D L R      L    L    +     +           W
Sbjct: 46  KIDSETREHVTMALCYTATPDRLSRRF--PNLRSLKLKGKPRAAMFNLIPENWGGYVTPW 103

Query: 83  MAYLGA-FRYLRSLNVADCRRVTSSALWALTGMTC--LKELDLSRCVKVTDAGMKHLLSI 139
           +  +    R L+S++      V+   L  L       L+ L L +C   T  G+  +++ 
Sbjct: 104 VTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTH 162

Query: 140 -STLEKLWLSETGLTADGIALLS-------SLQNLSVLDLGGLPVTDLVLRSL-QVLTKL 190
              ++ L + E+  +      L        SL+ L+        ++   L ++ +    L
Sbjct: 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222

Query: 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNL--------AWTGVTKLPNISSLECLNLSNCT 242
             + +   ++        K    L                    L     L  L LS   
Sbjct: 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281

Query: 243 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKA 302
            + +       A + K+ L       E                           + +   
Sbjct: 282 PNEMPILFPFAAQIRKLDLLYALLETE----------------------DHCTLIQKCPN 319

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-----------TRFSSAGVGILAGHLP 351
           LE L+  +  IGD  +E++A     L+ L +                S  G+  LA    
Sbjct: 320 LEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 352 NLEILSLSGTQIDDYAISYMSMM-PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410
            LE +++  + I + ++  +     +L    +   D +  I  +  +  +   L   + L
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 411 NHLERLNLEQTQVSDATLFPLSTF-KELIHLSLRNASLTDVSLHQL-SSLSKLTNLSIRD 468
                  L Q  ++D  L  +  +   +  + L     +D  L +       L  L +R 
Sbjct: 439 RRF-AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497

Query: 469 AVLTNSGLGSF-KPPRSLKLLDLHGGWLLTED-AILQFCKMHPRIEV 513
              +   + +      SL+ L + G         ++Q  + +  IE+
Sbjct: 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  100 bits (250), Expect = 3e-22
 Identities = 58/370 (15%), Positives = 111/370 (30%), Gaps = 49/370 (13%)

Query: 33  SLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGEN-SVDAEWMAYLGAFRY 91
            LE +  +     L  +         L+  FK  A   E  G + + D           +
Sbjct: 211 DLETIARNC--RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268

Query: 92  LRSLNVADCRRVTSSALWAL-TGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSET 150
            R L       +  + +  L      +++LDL   +  T+     +     LE L     
Sbjct: 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

Query: 151 GLTADGI-ALLSSLQNLSVLDLGGLP-----------VTDLVLRSL-QVLTKLEYLDLWG 197
            +   G+  L    + L  L +               V+   L +L Q   +LEY+ ++ 
Sbjct: 329 -IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           S ++N     +                T L N+     + L      + L  +     L 
Sbjct: 388 SDITNESLESI---------------GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
                            Y+    L+  D+  S + ++        +  + L      D+ 
Sbjct: 433 I-GCKKLRRFA-----FYLRQGGLT--DLGLSYIGQYS-----PNVRWMLLGYVGESDEG 479

Query: 318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM---M 374
           +   +    NL+ L +    FS   +      LP+L  L + G +        M M    
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539

Query: 375 PSLKFIDISN 384
            +++ I    
Sbjct: 540 WNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 33/253 (13%), Positives = 81/253 (32%), Gaps = 32/253 (12%)

Query: 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
           +     ++ ++    + + ++    NLR+L L                     ++  +  
Sbjct: 49  SETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKP-----------RAAMFNLIPENWG 97

Query: 362 QIDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 420
                 ++ +S  +  LK +      +          +DL L   A    + LE L L++
Sbjct: 98  GYVTPWVTEISNNLRQLKSVHFRRMIV----------SDLDLDRLAKARADDLETLKLDK 147

Query: 421 -TQVSDATLFPLSTF-KELIHLSLRNASLTDVSLHQLSSLSK----LTNLSIRD---AVL 471
            +  +   L  + T  +++  L +  +S ++     L  L++    L  L+      A +
Sbjct: 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI 207

Query: 472 TNSGLGS-FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG 530
           +   L +  +  RSL  + +    +L      +                I   ++  +  
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267

Query: 531 PSPSRTSLRASLV 543
                  L  S +
Sbjct: 268 FPRKLCRLGLSYM 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (294), Expect = 4e-28
 Identities = 84/405 (20%), Positives = 162/405 (40%), Gaps = 69/405 (17%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L         +   +   + T +  +  L   R   +    +  +  ++ L ++  S   
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQ 79

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           LT   I  L +L  L  + +    + D  +  L  LT L  L L+ +Q+++     LK  
Sbjct: 80  LT--DITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNL 133

Query: 212 PRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 268
             L+ L L+   ++ +  +S   SL+ L+  N   D          PLA +         
Sbjct: 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK--------PLANL--------- 176

Query: 269 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD-DSVEMVACVGAN 327
                     + L  LD+S++ +S    L ++  LE L  +++ I D   + ++     N
Sbjct: 177 ----------TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL----TN 222

Query: 328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 387
           L  L+L+  +     +G L   L NL  L L+  QI +  ++ +S +  L  + +    I
Sbjct: 223 LDELSLNGNQLKD--IGTL-ASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQI 277

Query: 388 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 447
                          +++ L  L  L  L L + Q+ D  + P+S  K L +L+L   ++
Sbjct: 278 S--------------NISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 321

Query: 448 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           +D+S   +SSL+KL  L   +  +++  + S     ++  L    
Sbjct: 322 SDIS--PVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGH 362

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (267), Expect = 1e-24
 Identities = 71/344 (20%), Positives = 141/344 (40%), Gaps = 34/344 (9%)

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
            ++L       LG   VTD V  S   L ++  L      + +     ++    L+ +N 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINF 75

Query: 220 AWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYI 276
           +   +T +  +     L  + ++N  I  I     N   L  ++L     I + +    +
Sbjct: 76  SNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN-NQITDIDPLKNL 133

Query: 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
               L+ L++S++++S    L+ + +L+ L   + +     +  +      L  L++S+ 
Sbjct: 134 TN--LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL----TTLERLDISSN 187

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGA 396
           + S   + +L   L NLE L  +  QI D  I+ + ++ +L  + ++   +K        
Sbjct: 188 KVSD--ISVL-AKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGTLASL 242

Query: 397 E--TDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 448
              TDL L+      L  L  L  L  L L   Q+S+  + PL+    L +L L    L 
Sbjct: 243 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLE 300

Query: 449 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           D+S   +S+L  LT L++    +++  +        L+ L  + 
Sbjct: 301 DIS--PISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYN 340

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 5e-19
 Identities = 66/336 (19%), Positives = 139/336 (41%), Gaps = 41/336 (12%)

Query: 88  AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147
             + L +LN  +    T S + AL+G+T L++L     V      +K L +++TLE+L +
Sbjct: 129 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDI 184

Query: 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV 207
           S   ++   I++L+ L NL  L      ++D+    L +LT L+ L L G+Q+ + G   
Sbjct: 185 SSNKVS--DISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGT-- 238

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLA 262
           L     L+ L+LA   ++ L  +S    L  L L    I +I  L G      L  + L 
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTA---LTNLELN 295

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
               + +      ++   L++L +  +++S    ++ +  L+ L   ++ + D  V  +A
Sbjct: 296 EN-QLEDISPISNLKN--LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLA 350

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382
            +  N+  L+  + + S         +L  +  L L+     +  ++Y + +     +  
Sbjct: 351 NL-TNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 418
                             +++   + +       ++
Sbjct: 407 VTG--------------ALIAPATISDGGSYTEPDI 428

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 3e-14
 Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 49/277 (17%)

Query: 224 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 283
           +     ++      L    +        ++  L +                      ++ 
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDT----VSQTDLDQ----------------------VTT 50

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           L      +     +  +  L  ++ S++ + D +  +       L ++ ++N + +    
Sbjct: 51  LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLT--KLVDILMNNNQIAD--- 104

Query: 344 GILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF--IQQVGAETDL 400
            I    +L NL  L+L   QI D  I  +  + +L  +++S+  I     +  + +   L
Sbjct: 105 -ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161

Query: 401 VLS-----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 455
                   L  L NL  LERL++   +VSD  +  L+    L  L   N  ++D++   L
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDIT--PL 217

Query: 456 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
             L+ L  LS+    L +  +G+     +L  LDL  
Sbjct: 218 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 51/291 (17%), Positives = 104/291 (35%), Gaps = 50/291 (17%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           L     L SL   + + ++   +  L  +T L EL L+   ++ D  +  L S++ L  L
Sbjct: 195 LAKLTNLESLIATNNQ-ISD--ITPLGILTNLDELSLNGN-QLKD--IGTLASLTNLTDL 248

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
            L+   ++   +A LS L  L+ L LG   ++++    L  LT L  L+L  +Q+ +   
Sbjct: 249 DLANNQIS--NLAPLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--I 302

Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKIS 260
           + +     L++L L +  ++ +  +S    L+ L   N  +  +  L    N        
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN-------- 354

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEM 320
                               +++L   ++ +S    L  +  +  L L+     +  V  
Sbjct: 355 --------------------INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVN- 393

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YAISY 370
                AN+   N       +           +     ++         +SY
Sbjct: 394 ---YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSY 441

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 13/178 (7%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L +L + + +    S +  L     L  L L     ++D  +  + S++ L++L+     
Sbjct: 289 LTNLELNENQLEDISPISNLKN---LTYLTLYFN-NISD--ISPVSSLTKLQRLFFYNNK 342

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           ++   ++ L++L N++ L  G   ++DL    L  LT++  L L     +N         
Sbjct: 343 VS--DVSSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 212 PRLSFL---NLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
              + +     A      + +  S    +++        E +   +    I    TTF
Sbjct: 399 SIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (295), Expect = 1e-27
 Identities = 86/438 (19%), Positives = 153/438 (34%), Gaps = 41/438 (9%)

Query: 86  LGAFRYLRSLNVADCRRVTS--SALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTL 142
             A   L  L + + +   S    L      T ++ L LS   +  T       L  + L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGS---- 198
             L LS   L   G    + L  L    L    +  L   SL  L  + YL+L  S    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 199 -----QVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILE 248
                 +        +    L  LN+    +  +       + +L+ L+LSN        
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 249 GNENKAPLAKISLAGTTFIN---------EREAFLYIETSLLSFLDVSNSSLSR---FCF 296
            NE    LA   L     +N         E +AF ++    L  LD+  + + +      
Sbjct: 371 TNETFVSLAHSPL---HILNLTKNKISKIESDAFSWLGH--LEVLDLGLNEIGQELTGQE 425

Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA-GHLPNLEI 355
              ++ +  + LS +     +    A V  +L+ L L      +          L NL I
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLER 415
           L LS   I +     +  +  L+ +D+ +      + ++    +    +  L+ L+HL  
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHN----NLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 416 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 475
           LNLE     +  +       EL  + L   +L  +     ++   L +L+++  ++T+  
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 476 LGSFKP-PRSLKLLDLHG 492
              F P  R+L  LD+  
Sbjct: 601 KKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 2e-25
 Identities = 74/443 (16%), Positives = 158/443 (35%), Gaps = 50/443 (11%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEK 144
               + L +L+++    ++S+ L     +  L+EL LS   ++   +    + + S+L+K
Sbjct: 117 FVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV---LTKLEYLDLWGSQVS 201
           L LS   +         ++  L  L L  + +   +   L +    T +  L L  SQ+S
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 202 NRGAAVLK--MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKA 254
                      +  L+ L+L++  +  +       +  LE   L    I  +   + +  
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 255 P-LAKISLAG--------TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKAL 303
             +  ++L             + + + F +     L  L++ ++ +        T +  L
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 304 EHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
           ++L LS+S     ++     V    + L  LNL+  + S       +  L +LE+L L  
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-LGHLEVLDLGL 414

Query: 361 TQI-DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLE 419
            +I  +        + ++  I +S        +             +   +  L+RL L 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR------------NSFALVPSLQRLMLR 462

Query: 420 QTQVSDATLFP--LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL--------SIRDA 469
           +  + +    P      + L  L L N ++ +++   L  L KL  L         +   
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

Query: 470 VLTNSGLGSFKPPRSLKLLDLHG 492
                 +   K    L +L+L  
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLES 545

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (271), Expect = 1e-24
 Identities = 72/397 (18%), Positives = 144/397 (36%), Gaps = 37/397 (9%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSLQNLSVLDL 171
            +  D S            L  +     + +  L L+   L     A  +    L+ LD+
Sbjct: 6   HEVADCSHL---------KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 56

Query: 172 GGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--- 228
           G   ++ L     Q L  L+ L+L  +++S            L+ L+L    + K+    
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 229 --NISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAG---TTFINEREAFLYIETSLLS 282
                +L  L+LS+  + S   G       L ++ L+           E       S L 
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK--SEELDIFANSSLK 174

Query: 283 FLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMV--ACVGANLRNLNLSNTRF 338
            L++S++ +  F       +  L  L L++  +G    E +       ++RNL+LSN++ 
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 339 SSAGVGILAG-HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE 397
           S+       G    NL +L LS   ++       + +P L++  +   +I+         
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS 457
                ++  L       + ++    +     F     K L HL++ +  +  +  +  + 
Sbjct: 295 LF---NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 458 LSKLTNLSIRDAVLTNSGL--GSFK--PPRSLKLLDL 490
           L  L  LS+ ++  +   L   +F       L +L+L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 77/412 (18%), Positives = 140/412 (33%), Gaps = 47/412 (11%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
              +  L SL+V     ++         +  LK L+L    +++    K     + L +L
Sbjct: 45  FTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTEL 102

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
            L    +           +NL  LDL    ++   L +   L  L+ L L     +N+  
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS----NNK-- 156

Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265
             ++                     SSL+ L LS+  I     G                
Sbjct: 157 --IQALKSEELDIF---------ANSSLKKLELSSNQIKEFSPG----------CFHAIG 195

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD-DSVEMVACV 324
            +      L+     L+ + +  S   + C      ++ +L LS+S +    +   +   
Sbjct: 196 RLFG----LF-----LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246

Query: 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
             NL  L+LS    +  G       LP LE   L    I       +  + +++++++  
Sbjct: 247 WTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 385 TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
           +  K  I          +   + Q L  LE LN+E   +        +    L +LSL N
Sbjct: 306 SFTKQSISLASLPK---IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 445 --ASLTDVSLHQLSSL--SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
              SL  ++     SL  S L  L++    ++     +F     L++LDL  
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.7 bits (218), Expect = 3e-18
 Identities = 64/357 (17%), Positives = 132/357 (36%), Gaps = 49/357 (13%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
           +  V D   L +T +      + T +  L+L  +Q+    AA    + +L+ L++ +  +
Sbjct: 5   SHEVADCSHLKLTQV---PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 225 TKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279
           +KL       +  L+ LNL +  +  + +           + A  T              
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDK----------TFAFCT-------------- 97

Query: 280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
            L+ L + ++S+ +       + K L  LDLS + +   S ++   V   NL+ L LSN 
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNN 155

Query: 337 RFSSAGVGILA-GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 395
           +  +     L      +L+ L LS  QI +++      +  L  + ++N  +   + +  
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE-- 213

Query: 396 AETDLVLSLTALQNLNHLERLNLEQTQVS--DATLFPLSTFKELIHLSLRNASLTDVSLH 453
                   L        +  L+L  +Q+S    T F    +  L  L L   +L  V   
Sbjct: 214 -------KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 454 QLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 510
             + L +L    +    + +    S     +++ L+L   +     ++    K+   
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 65/333 (19%), Positives = 115/333 (34%), Gaps = 32/333 (9%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC---VKVTDAGMKHLLSISTL 142
               + L  LN+ D   +        TG+  LK L LS     ++         L+ S L
Sbjct: 325 FQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV-LRSLQVLTKLEYLDLWGSQVS 201
             L L++  ++       S L +L VLDLG   +   +  +  + L  +  + L  ++  
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 202 NRGAAVLKMFPRLSFLNLAW---TGVTKLPNI----SSLECLNLSNCTIDSI----LEGN 250
                   + P L  L L       V   P+      +L  L+LSN  I +I    LEG 
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 251 ENKAPLAKISLAG---TTFINEREAFLYIET----SLLSFLDVSNSSLSRFCF--LTQMK 301
           E    L  + L                 I      S L  L++ ++            + 
Sbjct: 504 EK---LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 361
            L+ +DL  + +      +      +L++LNL     +S    +      NL  L +   
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQ-VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQV 394
             D    +  S+   + +I+ ++T+I       
Sbjct: 620 PFD---CTCESIAWFVNWINETHTNIPELSSHY 649

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (292), Expect = 2e-27
 Identities = 82/444 (18%), Positives = 155/444 (34%), Gaps = 49/444 (11%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV--KVTDAGMKHLLSIS--- 140
           L   + L SL +     ++S  L        LK LD        ++   M  L   +   
Sbjct: 125 LHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 141 -------------------TLEKLWLSETGLTADGIALLS--SLQNLSVLDLGGLPVTDL 179
                                + L    T         L   ++Q+L +     +   D+
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 180 VLRSLQVLTK--LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSL 233
                + L +  +E ++L      N  +     F  L  L+L  T +++LP     +S+L
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303

Query: 234 ECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS 292
           + L LS    +++ + +  N   L  +S+ G T   E           L  LD+S+  + 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 293 RF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 348
                   L  +  L+ L+LS +       E        L  L+L+ TR           
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQ 422

Query: 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ 408
           +L  L++L+LS + +D  +      +P+L+ +++                  +    +LQ
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN---------IQKTNSLQ 473

Query: 409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468
            L  LE L L    +S       ++ K + H+ L +  LT  S+  LS L  +  L++  
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532

Query: 469 AVLTNSGLGSFKPPRSLKLLDLHG 492
             ++             + ++L  
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.7 bits (236), Expect = 1e-20
 Identities = 70/418 (16%), Positives = 126/418 (30%), Gaps = 60/418 (14%)

Query: 117 LKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL 174
            + L+ S      + +     L     L  L L+   +         S   L  L L   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRL---INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 175 PVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----N 229
           P+  +   +L     L++L    + +S+     L     L  L L    ++ +       
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 230 ISSLECLNLSNCTIDSILEG-------------NENKAPLAKISLAGTTFINERE----- 271
              L+ L+  N  I  + +              N N   +A I          +      
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 272 --------------AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
                             +       +D  + S + F  L +M  +E ++L      + S
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFFNIS 270

Query: 318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377
                C  + L+ L+L+ T  S    G+    L  L+ L LS  + ++      S  PSL
Sbjct: 271 SNTFHCF-SGLQELDLTATHLSELPSGL--VGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFK 435
             + I     +  +               L+NL +L  L+L    +  +      L    
Sbjct: 328 THLSIKGNTKRLELG-----------TGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 492
            L  L+L       +         +L  L +    L        F+    LK+L+L  
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 67/271 (24%), Positives = 113/271 (41%), Gaps = 22/271 (8%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE-TGLTADGIALLSSLQNLSV 168
            L G++ LK+L LS   K  +       +  +L  L +   T     G   L +L+NL  
Sbjct: 296 GLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 169 LDLGG--LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226
           LDL    +  +D     L+ L+ L+ L+L  ++  +      K  P+L  L+LA+T +  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 227 LP------NISSLECLNLSNCTIDSILEGNENKAP-LAKISLAG---TTFINEREAFLYI 276
                   N+  L+ LNLS+  +D   E   +  P L  ++L G        ++   L  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 277 ETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
              L   L +S    SS+ +  F T +K + H+DLS + +   S  + A        LNL
Sbjct: 475 LGRL-EILVLSFCDLSSIDQHAF-TSLKMMNHVDLSHNRL--TSSSIEALSHLKGIYLNL 530

Query: 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           ++   S     +L   L     ++L    +D
Sbjct: 531 ASNHISIILPSLLPI-LSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 19/168 (11%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFIDIS 383
           +   L  S     +      +  L NL  L L+      I +           L  + ++
Sbjct: 34  STECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQ---HRLDTLVLT 89

Query: 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 443
              +    +            TAL     L+ L   QT +S     PL   K L  L L 
Sbjct: 90  ANPLIFMAE------------TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 444 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 491
           +  ++ + L +     KL  L  ++  +           +    L L+
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 21/167 (12%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
            N  NL L+          I      + E L  S   +     +  S + +L F+D++  
Sbjct: 17  YNCENLGLNE---------IPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 386 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 445
            I    +               Q+ + L+ L L    +       LS  K L HL     
Sbjct: 68  QIYWIHED------------TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
            ++ +    L +   L +L +    +++  L    P   LK+LD   
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (278), Expect = 1e-26
 Identities = 64/363 (17%), Positives = 145/363 (39%), Gaps = 33/363 (9%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPV 176
              L       +    +     ++   +  L +  +T   +     L++++ L + G  V
Sbjct: 2   AATLATLPA-PINQ--IFPDADLAEGIRAVLQKASVT--DVVTQEELESITKLVVAGEKV 56

Query: 177 TDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SL 233
             +  + ++ LT LEYL+L G+Q+++     L    +L+ L +    +T +  +    +L
Sbjct: 57  ASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNL 112

Query: 234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293
             L L+   I  I     N   +  ++L     +++      +  + L++L V+ S +  
Sbjct: 113 RELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNM--TGLNYLTVTESKVKD 169

Query: 294 FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 353
              +  +  L  L L+ + I D S  + +    +L        + +   +  +  ++  L
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDIS-PLASLT--SLHYFTAYVNQITD--ITPV-ANMTRL 223

Query: 354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF--IQQVGAETDLVLS------LT 405
             L +   +I D  +S ++ +  L +++I    I     ++ +     L +       ++
Sbjct: 224 NSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS 281

Query: 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLS 465
            L NL+ L  L L   Q+ +  +  +     L  L L    +TD+    L+SLSK+ +  
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSAD 339

Query: 466 IRD 468
             +
Sbjct: 340 FAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (253), Expect = 2e-23
 Identities = 66/347 (19%), Positives = 142/347 (40%), Gaps = 46/347 (13%)

Query: 85  YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144
                  +  L VA  + V S  +  +  +T L+ L+L+   ++TD  +  L ++  L  
Sbjct: 39  TQEELESITKLVVAGEK-VAS--IQGIEYLTNLEYLNLNGN-QITD--ISPLSNLVKLTN 92

Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
           L++    +T   I+ L +L NL  L L    ++D+    L  LTK+  L+L  +      
Sbjct: 93  LYIGTNKIT--DISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNL-SD 147

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKI 259
            + L     L++L +  + V  +  I+    L  L+L+   I+ I  L    +   L   
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS---LHYF 204

Query: 260 SLAGTTFINEREAFLYIET-SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD-DS 317
           +       N+      +   + L+ L + N+ ++    L  +  L  L++ ++ I D ++
Sbjct: 205 TAYV----NQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA 260

Query: 318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377
           V+ +      L+ LN+ + + S   + +L  +L  L  L L+  Q+ +  +  +  + +L
Sbjct: 261 VKDLT----KLKMLNVGSNQISD--ISVL-NNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 424
             + +S   I                +  L +L+ ++  +     + 
Sbjct: 314 TTLFLSQNHIT--------------DIRPLASLSKMDSADFANQVIK 346

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  111 bits (279), Expect = 3e-26
 Identities = 87/466 (18%), Positives = 167/466 (35%), Gaps = 83/466 (17%)

Query: 70  IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMTCLKELDLSRC 125
           ++++ E   DA W   L   +  + + + DC  +T +       AL     L EL+L   
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN 66

Query: 126 VKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSL----QNLSVLDLGGLPV 176
            ++ D G+  +L         ++KL L    LT  G  +LSS       L  L L    +
Sbjct: 67  -ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

Query: 177 TDLVLRSL-----QVLTKLEYLDLWGSQVSNRG----AAVLKMFPRLSFLNLAWT----- 222
            D  L+ L         +LE L L    +S       A+VL+  P    L ++       
Sbjct: 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185

Query: 223 GVTKL-----PNISSLECLNLSNCTID--------SILEGNENKAPLAKISLAGTTFINE 269
           GV  L      +   LE L L +C +          I+    +   L +++L      + 
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS---LRELALGSNKLGDV 242

Query: 270 -----REAFLYIETSLLSFLDVSNSSLSRFCF------LTQMKALEHLDLSSSMIGDDSV 318
                    L+  + L + L +    ++          L   ++L+ L L+ + +GD+  
Sbjct: 243 GMAELCPGLLHPSSRLRT-LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 319 ----EMVACVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYM 371
               E +   G  L +L + +  F++A     +        L  L +S  +++D  +  +
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 372 SMM-----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 426
                     L+ + +++ D+          +   L+   L   + L  L+L    + DA
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDS----SCSS---LA-ATLLANHSLRELDLSNNCLGDA 413

Query: 427 TLFPLSTFKE-----LIHLSLRNASLTDVSLHQLSS-LSKLTNLSI 466
            +  L          L  L L +   ++    +L +      +L +
Sbjct: 414 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 459

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  101 bits (255), Expect = 3e-23
 Identities = 74/413 (17%), Positives = 144/413 (34%), Gaps = 75/413 (18%)

Query: 117 LKELDLSRCVKVTDAGMKHLLS-ISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDL 171
           ++ LD+    +++DA    LL  +   + + L + GLT          L     L+ L+L
Sbjct: 5   IQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 172 GGLPVTDLVLRSL-----QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226
               + D+ +  +         K++ L L    ++  G  VL                + 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL---------------SST 108

Query: 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 286
           L  + +L+ L+LS+  +     G+     L +  L     +         E   L +  +
Sbjct: 109 LRTLPTLQELHLSDNLL-----GDAGLQLLCEGLLDPQCRL---------EKLQLEYCSL 154

Query: 287 SNSSLSRFCF-LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSA 341
           S +S       L      + L +S++ I +  V ++          L  L L +   +S 
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214

Query: 342 GVGILAGHL---PNLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQ 393
               L G +    +L  L+L   ++ D  ++ +          L+ + I    I      
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI------ 268

Query: 394 VGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS-----TFKELIHLSLRNASLT 448
             A+    L    L+    L+ L+L   ++ D     L         +L  L +++ S T
Sbjct: 269 -TAKGCGDLC-RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

Query: 449 DVSLHQLSSL----SKLTNLSIRDAVLTNSGLGSF-----KPPRSLKLLDLHG 492
                  SS+      L  L I +  L ++G+        +P   L++L L  
Sbjct: 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  101 bits (254), Expect = 4e-23
 Identities = 79/460 (17%), Positives = 154/460 (33%), Gaps = 87/460 (18%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWL 147
           ++SL++       +     L  +   + + L  C  +T+A  K + S       L +L L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNL 63

Query: 148 SETGLTADGIALLSSL-----QNLSVLDLGGLPVTD----LVLRSLQVLTKLEYLDLWGS 198
               L   G+  +          +  L L    +T     ++  +L+ L  L+ L L  +
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 199 QVSNRGA-----AVLKMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTID 244
            + + G       +L    RL  L L +  ++          L      + L +SN    
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN--- 180

Query: 245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC------FLT 298
                         I+ AG   + +    L      L  L + +  ++          + 
Sbjct: 181 -------------DINEAGVRVLCQ---GLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 299 QMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSAGVGILA---GHLP 351
              +L  L L S+ +GD  +  +        + LR L +     ++ G G L        
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 352 NLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406
           +L+ LSL+G ++ D     +          L+ + + +           A      S + 
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF-------TAACCSHFS-SV 336

Query: 407 LQNLNHLERLNLEQTQVSDATLFPLSTF-----KELIHLSLRNASLTDVSLHQLSSL--- 458
           L     L  L +   ++ DA +  L          L  L L +  ++D S   L++    
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 459 -SKLTNLSIRDAVLTNSGLGSF-----KPPRSLKLLDLHG 492
              L  L + +  L ++G+        +P   L+ L L+ 
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 62/284 (21%), Positives = 96/284 (33%), Gaps = 80/284 (28%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSL- 163
            +     L+EL L    K+ D GM  L        S L  LW+ E G+TA G   L  + 
Sbjct: 222 IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 164 ---QNLSVLDLGGLPVTDLVLRSL-----QVLTKLEYLDLWGSQVSNRG----AAVLKMF 211
              ++L  L L G  + D   R L     +   +LE L +     +       ++VL   
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 212 PRLSFLNLAW-----TGVTKL------PNISSLECLNLSNCTIDSILEGNENKAPLAKIS 260
             L  L ++       GV +L      P  S L  L L++C                 +S
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPG-SVLRVLWLADC----------------DVS 383

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV-- 318
            +  + +                             L    +L  LDLS++ +GD  +  
Sbjct: 384 DSSCSSLAA--------------------------TLLANHSLRELDLSNNCLGDAGILQ 417

Query: 319 --EMVACVGANLRNLNLSNTRFSSAGVGILAGHL---PNLEILS 357
             E V   G  L  L L +  +S      L       P+L ++S
Sbjct: 418 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 48/289 (16%), Positives = 97/289 (33%), Gaps = 53/289 (18%)

Query: 231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290
             ++ L++    +      +   A L                    +   L    ++ + 
Sbjct: 3   LDIQSLDIQCEEL-----SDARWAELLP-------------LLQQCQVVRLDDCGLTEAR 44

Query: 291 LSRFCF-LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANLRNLNLSNTRFSSAGVGI 345
                  L    AL  L+L S+ +GD  V  V          ++ L+L N   + AG G+
Sbjct: 45  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 346 LAGHL---PNLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQVGAE 397
           L+  L   P L+ L LS   + D  +  +          L+ + +    +        A 
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-------SAA 157

Query: 398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE-----LIHLSLRNASLTDVSL 452
           +   L+ + L+     + L +    +++A +  L    +     L  L L +  +T  + 
Sbjct: 158 SCEPLA-SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 453 HQLSSL----SKLTNLSIRDAVLTNSGL-----GSFKPPRSLKLLDLHG 492
             L  +    + L  L++    L + G+     G   P   L+ L +  
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 24/149 (16%)

Query: 92  LRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHL-----LSISTL 142
           L SL V  C   T++     + +      L EL +S   ++ DAG++ L        S L
Sbjct: 315 LESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVL 372

Query: 143 EKLWLSETGLTADGIALLSSL----QNLSVLDLGGLPVTDLVLRSL-----QVLTKLEYL 193
             LWL++  ++    + L++      +L  LDL    + D  +  L     Q    LE L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 194 DLWGSQVSNRG----AAVLKMFPRLSFLN 218
            L+    S        A+ K  P L  ++
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (262), Expect = 1e-23
 Identities = 61/391 (15%), Positives = 123/391 (31%), Gaps = 57/391 (14%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG------LTADGIALLSSLQNLSV-- 168
           L EL L      ++     L +++ L    L          L     +++  L ++++  
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP 228
             L         +     L  +  + L  + VS +    +    +   L++    + + P
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSL--AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 229 --NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 286
             ++  L+ L L+        +     +                          LS+LD+
Sbjct: 324 TLDLPFLKSLTLTMNKGSISFKKVALPS--------------------------LSYLDL 357

Query: 287 SNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341
           S ++LS      +  L    +L HLDLS +     S   +      L++L+  ++     
Sbjct: 358 SRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAIIMSANFMGL--EELQHLDFQHSTLKRV 414

Query: 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 401
                   L  L  L +S T            + SL  + ++    K             
Sbjct: 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-------- 466

Query: 402 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 461
                  N  +L  L+L + Q+   +     T   L  L++ + +L  +     + L  L
Sbjct: 467 ---NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 462 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           + L      +  S       P+SL   +L  
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 70/392 (17%), Positives = 128/392 (32%), Gaps = 60/392 (15%)

Query: 117 LKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL 174
            K +DLS      +      +    S L+ L LS   +          L +LS L L G 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 175 PVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------ 228
           P+      S   LT LE L    +++++  +  +     L  LN+A   +          
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
           N+++L  ++LS   I +I                          FL     +   LD+S 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVN---------------DL-----QFLRENPQVNLSLDMSL 190

Query: 289 SSLSRFCFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA------ 341
           + +        Q   L  L L  +    + ++      A L    L    F         
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 342 GVGILAGHLPNLEILSLSGTQIDDYAISYM--SMMPSLKFIDISNTDIKGFIQQVGAETD 399
              I+ G L ++ I     T  +D++   +    + ++  + ++   IK           
Sbjct: 251 EPSIMEG-LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK----------- 298

Query: 400 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 459
               L  +      + L++ + Q+     FP      L  L+L     +     +  +L 
Sbjct: 299 ---YLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSI--SFKKVALP 350

Query: 460 KLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 491
            L+ L +    L+ SG  S+    +  L  L 
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 54/313 (17%), Positives = 106/313 (33%), Gaps = 58/313 (18%)

Query: 211 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265
                 ++L++  +  L      N S L+ L+LS C I++I                   
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI------------------- 71

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVAC 323
              E +A+       LS L ++ + +  F     + + +LE+L    + +       +  
Sbjct: 72  ---EDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMP-SLKF 379
           +   L+ LN+++    S  +     +L NL  + LS      I    + ++   P     
Sbjct: 127 LI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 380 IDISNTDIKGFIQQVGAETDL-VLSL-----------TALQNLNHLERLNLEQTQVSD-- 425
           +D+S   I     Q      L  L+L           T LQNL  L    L   +  D  
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 426 -ATLFPLSTFKELIHLSLRNASL-----TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
              +F  S  + L  +++    L         + +   L+ ++ +S+    +    L   
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDV 303

Query: 480 KPPRSLKLLDLHG 492
                 + L +  
Sbjct: 304 PKHFKWQSLSIIR 316

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 51/291 (17%), Positives = 106/291 (36%), Gaps = 24/291 (8%)

Query: 87  GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL--LSISTLEK 144
             F  L +++      V+   L  +      + L + RC       +K    L +  L+ 
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC------QLKQFPTLDLPFLKS 332

Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVL--TKLEYLDLWGSQVSN 202
           L L+    +        +L +LS LDL    ++     S   L    L +LDL  +    
Sbjct: 333 LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 203 RGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENKAP- 255
             A        L  L+   + + ++       ++  L  L++S        +G       
Sbjct: 391 MSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 256 LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMI 313
           L  + +AG +F +   + ++  T+ L+FLD+S   L +        +  L+ L++S + +
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
                     +  +L  L+ S  R  ++   +      +L   +L+   + 
Sbjct: 510 LFLDSSHYNQL-YSLSTLDCSFNRIETSKGILQH-FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 55/262 (20%), Positives = 91/262 (34%), Gaps = 39/262 (14%)

Query: 89  FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWL 147
             +L+SL +   +    S  +    +  L  LDLSR  +  +       L  ++L  L L
Sbjct: 327 LPFLKSLTLTMNK---GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAA 206
           S  G      A    L+ L  LD     +  +   S    L KL YLD+  +        
Sbjct: 384 SFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 207 VLKMFPRLSFLNLA---WTGVTK---LPNISSLECLNLSNCTIDSILEGNENKAPLAKIS 260
           +      L+ L +A   +   T      N ++L  L+LS C ++ I  G           
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG----------- 491

Query: 261 LAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSV 318
                F              L  L++S+++L         Q+ +L  LD S + I     
Sbjct: 492 ----VFDT---------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 319 EMVACVGANLRNLNLSNTRFSS 340
            +      +L   NL+N   + 
Sbjct: 539 ILQH-FPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
                 L+ L+         +   A   +  L  LD+S             L +++L  L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTL 453

Query: 146 WLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
            ++      + ++ + ++  NL+ LDL    +  +       L +L+ L++  + +    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI 246
           ++       LS L+ ++  +            SL   NL+N ++  I
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (256), Expect = 4e-23
 Identities = 71/426 (16%), Positives = 140/426 (32%), Gaps = 44/426 (10%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L+ LN+      T         +T L+ L +      ++        +++L +L +    
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           L       L S++++  L L       L+     +L+ + YL+L  + ++    + L + 
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 212 PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 271
              S +       + L + S  E L L    I  + E   +   L  +     +  +   
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 272 AFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NL 328
               +ET  +  L +    L        + ++ ++ + + +S +    V         +L
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV--FLVPCSFSQHLKSL 336

Query: 329 RNLNLSNTRFSSAGVG--ILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISN 384
             L+LS        +      G  P+L+ L LS   +         +  + +L  +DIS 
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 385 TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
                                + Q    +  LNL  T +    +      + L  L + N
Sbjct: 397 NTFHPM-------------PDSCQWPEKMRFLNLSSTGI---RVVKTCIPQTLEVLDVSN 440

Query: 445 ASLTDVSLH------------QLSSL------SKLTNLSIRDAVLTNSGLGSFKPPRSLK 486
            +L   SL             +L +L        L  + I    L +   G F    SL+
Sbjct: 441 NNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 487 LLDLHG 492
            + LH 
Sbjct: 501 KIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 67/370 (18%), Positives = 139/370 (37%), Gaps = 42/370 (11%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           + ++ L LS   +T  G   L +  NL VL L    +  +   +   L  LE+LDL  + 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENK 253
           +S+  ++       L +LNL       L       N+++L+ L + N    S +      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI------ 139

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSS 311
                           R  F  +  + L+ L++   SL  +    L  ++ + HL L  S
Sbjct: 140 ---------------RRIDFAGL--TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH--LPNLEILSLSGTQIDDYAIS 369
                       + +++R L L +T  +      L        ++ L+  G+ + D + +
Sbjct: 183 ESAFLLEIFADIL-SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 370 YMS----MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 425
            +      +  L  ++  +  + G      +E+D+V  L  ++ +  + RL++ Q  +  
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-IRRLHIPQFYLFY 300

Query: 426 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPP 482
                 S  +++  +++ N+ +  V       L  L  L + + ++    L         
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 483 RSLKLLDLHG 492
            SL+ L L  
Sbjct: 361 PSLQTLVLSQ 370

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 24/228 (10%)

Query: 279 SLLSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLN 332
           + L  L + +S ++      F  L     LEHLDLS + +   S+        ++L+ LN
Sbjct: 50  ANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDNHL--SSLSSSWFGPLSSLKYLN 104

Query: 333 LSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKGFI 391
           L    + + GV  L  +L NL+ L +       +      + + SL  ++I    ++   
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-- 162

Query: 392 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 451
                         +L+++  +  L L  ++ +            + +L LR+ +L    
Sbjct: 163 ----------YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 452 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 499
              L      + +       +     SF     L    L    +  +D
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (257), Expect = 6e-23
 Identities = 85/425 (20%), Positives = 160/425 (37%), Gaps = 26/425 (6%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
                 L+ L +       +    A   +  L+ LDL    K+          +  L +L
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFEL 102

Query: 146 WLSETGLTADGI--ALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQVSN 202
            L   GL+   +      +L+ L+ LDL    +  L L  S   L  L+ +D   +Q+  
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 203 RGAAVLK--MFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE--GNENKAPLAK 258
                L+      LSF +LA   +    ++   +C+N     +  IL+  GN     +  
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

Query: 259 ISLAGTTFINEREAFL--YIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD 316
                 +        L  +I  +   F ++ +   + F  L +  ++ HLDLS   +   
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS-SVRHLDLSHGFVFSL 281

Query: 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376
           +  +   +  +L+ LNL+  + +        G L NL++L+LS   + +   S    +P 
Sbjct: 282 NSRVFETLK-DLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 377 LKFIDISNTDI----KGFIQQVGAETDLVLS---LTALQNLNHLERLNLEQTQVSDATLF 429
           + +ID+    I        + +     L L    LT +  +  +  + L   ++   TL 
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV--TLP 397

Query: 430 PLSTFKELIHLSLRNASLTDVSLHQ-LSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKL 487
            ++    LIHLS     L ++ +   L  +  L  L +     ++ SG  +     SL+ 
Sbjct: 398 KINLTANLIHLS--ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 488 LDLHG 492
           L L  
Sbjct: 456 LFLGE 460

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (257), Expect = 6e-23
 Identities = 61/359 (16%), Positives = 125/359 (34%), Gaps = 52/359 (14%)

Query: 117 LKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGL 174
           ++ LDLS      +     + L     L+ L L+   +          L NL VL+L   
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKD---LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 175 PVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLE 234
            + +L   +   L K+ Y+DL  + ++       K   +L  L+L    +T +  I S+ 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 294
            + LS   + ++                           + +  +L+   +    +L   
Sbjct: 385 DIFLSGNKLVTL-------------------------PKINLTANLIHLSENRLENLDIL 419

Query: 295 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG----HL 350
            FL ++  L+ L L+ +     S +       +L  L L       A    L       L
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410
            +L++L L+   ++       S + +L+ + +++  +                L+     
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--------------VLSHNDLP 525

Query: 411 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLR-NASLTDVSLHQLSSLSKLTNLSIRD 468
            +LE L++ + Q+          F  L  L +  N  + +  L    +    TN++I  
Sbjct: 526 ANLEILDISRNQL---LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 66/390 (16%), Positives = 129/390 (33%), Gaps = 48/390 (12%)

Query: 139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWG 197
           ++T E+L LS   +     +    L+ L +L+LG       +   + + L  L  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTK-------LPNISSLECLNLSNCTIDSILEGN 250
           S++        +    L  L L + G++          N+ +L  L+LS   I S+    
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 251 E--NKAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNSSLSRFCFLT--------Q 299
                  L  I  +              ++   LSF  ++ +SL     +         +
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 300 MKALEHLDLSSSMIGDDSVEMVA-----------CVGANLRNLNLSNTRFSSAGVGILAG 348
              LE LD+S +    D     +            +  ++                  AG
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 349 -HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407
               ++  L LS   +          +  LK ++++   I              ++  A 
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK------------IADEAF 310

Query: 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 467
             L++L+ LNL    + +          ++ ++ L+   +  +       L KL  L   
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD-- 368

Query: 468 DAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 497
              L ++ L +     S+  + L G  L+T
Sbjct: 369 ---LRDNALTTIHFIPSIPDIFLSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 69/436 (15%), Positives = 147/436 (33%), Gaps = 60/436 (13%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSET 150
           L  L+++  +  +     +   +  LK +D S   + +        L   TL    L+  
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 151 GLT----ADGIALLSSLQN--LSVLDLGGLPVTDLVLR------------SLQVLTKLEY 192
            L      D    ++  +N  L +LD+ G   T  +              SL +   +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 193 LDLWGSQVSNRGAAVLKMFPRLS--FLNLAWTGVTKLP-----NISSLECLNLSNCTIDS 245
                  + +          R S   L+L+   V  L       +  L+ LNL+   I+ 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 246 ILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKA 302
           I +        L  ++L+    + E  +  +     ++++D+  + ++         ++ 
Sbjct: 305 IADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 362
           L+ LDL  + +             ++ ++ LS  +  +     L        ++ LS  +
Sbjct: 364 LQTLDLRDNALTTI------HFIPSIPDIFLSGNKLVT-----LPKINLTANLIHLSENR 412

Query: 363 IDDYAISYMSM-MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421
           +++  I Y  + +P L+ + ++                             LE+L L + 
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-----------TPSENPSLEQLFLGEN 461

Query: 422 Q--VSDATLFPLSTFKE---LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 476
              ++  T      F+    L  L L +  L  +     S L+ L  LS+    LT    
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 477 GSFKPPRSLKLLDLHG 492
                  +L++LD+  
Sbjct: 522 NDLPA--NLEILDISR 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (253), Expect = 1e-22
 Identities = 80/442 (18%), Positives = 156/442 (35%), Gaps = 42/442 (9%)

Query: 85  YLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV--KVTDAGMKHLLSISTL 142
            +G  + L+ LNVA     +       + +T L+ LDLS      +    ++ L  +  L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 143 E-KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQV 200
              L LS   +          +  L  L L     +  V++  +Q L  LE   L   + 
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 201 SNRG------AAVLKMFPRLSFLNLAWTGVTKLPN--------ISSLECLNLSNCTIDSI 246
            N G       + L+    L+        +    +        ++++   +L + TI+ +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL 306
            + + N      + L       +   F  ++   L  L  +++          + +LE L
Sbjct: 298 KDFSYNFG-WQHLELVN----CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352

Query: 307 DLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 365
           DLS + +        +  G  +L+ L+LS     +     L   L  LE L    + +  
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQ 410

Query: 366 YA-ISYMSMMPSLKFIDISNTDIKGFIQQV--GAETDLVLSL-----------TALQNLN 411
            +  S    + +L ++DIS+T  +     +  G  +  VL +                L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 471
           +L  L+L Q Q+   +    ++   L  L++ + +   +       L+ L  L      +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 472 TNSGLGSFKP-PRSLKLLDLHG 492
             S     +  P SL  L+L  
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 74/367 (20%), Positives = 117/367 (31%), Gaps = 52/367 (14%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
            + + L LS   L   G     S   L VLDL    +  +   + Q L+ L  L L G+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKA 254
           + +           L  L    T +  L      ++ +L+ LN+++  I S         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---- 143

Query: 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALE-HLDL 308
                      F N          + L  LD+S++ +          L QM  L   LDL
Sbjct: 144 ----------YFSN---------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368
           S + +    ++  A     L  L L N   S   +      L  LE+  L   +  +   
Sbjct: 185 SLNPMN--FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 369 SYM---SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 425
                 S +  L  + I    +      +    DL         L ++   +L    +  
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL------FNCLTNVSSFSLVSVTIE- 295

Query: 426 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 485
             +   S      HL L N         +L SL +LT  S +          S     SL
Sbjct: 296 -RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDLPSL 349

Query: 486 KLLDLHG 492
           + LDL  
Sbjct: 350 EFLDLSR 356

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 82/431 (19%), Positives = 154/431 (35%), Gaps = 59/431 (13%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSE 149
           L +L +     + S AL A +G++ L++L         + +  + HL +   L++L ++ 
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAH 133

Query: 150 TGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY----LDLWGSQVSNRG 204
             + +  +    S+L NL  LDL    +  +    L+VL ++      LDL  + ++   
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI----LEGNENKAPLAKIS 260
               K   RL  L L     +   N+       L+   +  +         N     K +
Sbjct: 194 PGAFKEI-RLHKLTLRNNFDS--LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 261 LAGTTFINERE-AFLYIETSL------------LSFLDVSNSSLSRFCFLTQMKALEHLD 307
           L G   +   E    Y++  L            +S   + + ++ R    +     +HL+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
           L +   G    +       +L+ L  ++ +  +A   +    LP+LE L LS   +    
Sbjct: 311 LVNCKFG----QFPTLKLKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKG 363

Query: 368 ISYMSM--MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 425
               S     SLK++D+S   +                      L  LE L+ + + +  
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSN-------------FLGLEQLEHLDFQHSNLK- 409

Query: 426 ATLFPLSTFKE---LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL-GSFKP 481
             +   S F     LI+L + +           + LS L  L +       + L   F  
Sbjct: 410 -QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 482 PRSLKLLDLHG 492
            R+L  LDL  
Sbjct: 469 LRNLTFLDLSQ 479

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 52/288 (18%), Positives = 98/288 (34%), Gaps = 42/288 (14%)

Query: 87  GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW 146
             F  L +++      VT   +   +     + L+L  C            ++       
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC------KFGQFPTLKLKSLKR 329

Query: 147 LSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
           L+ T            L +L  LDL    L       +S    T L+YLDL  + V    
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENKAP-LA 257
           +  L +  +L  L+   + + ++       ++ +L  L++S+        G  N    L 
Sbjct: 390 SNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----------------------- 294
            + +AG +F       ++ E   L+FLD+S   L +                        
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 295 ---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339
                   + +L+ LD S + I     + +    ++L  LNL+   F+
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.3 bits (239), Expect = 5e-21
 Identities = 55/273 (20%), Positives = 97/273 (35%), Gaps = 61/273 (22%)

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLA 262
              F      NL    VT     +   S++ +  +N  I S+  ++   N          
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN---------- 66

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
                             ++ L ++ + L+    LT +K L  L L  + I D  +  + 
Sbjct: 67  ------------------VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LSSLK 106

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFI 380
            +   L++L+L +   S      + G  HLP LE L L   +I D  I+ +S +  L  +
Sbjct: 107 DL-KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL 158

Query: 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 440
            + +  I                +  L  L  L+ L L +  +SD  L  L+  K L  L
Sbjct: 159 SLEDNQIS--------------DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVL 202

Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
            L +    +  ++  S+L     +   D  L  
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.8 bits (235), Expect = 2e-20
 Identities = 49/269 (18%), Positives = 93/269 (34%), Gaps = 55/269 (20%)

Query: 224 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 283
           +      +     NL   ++         +  L                        +  
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDA----VTQNELNS----------------------IDQ 47

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +  +NS +     +  +  +  L L+ + + D  ++ +  +  NL  L L   +     +
Sbjct: 48  IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNL-KNLGWLFLDENKIKD--L 102

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403
             L   L  L+ LSL    I D  I+ +  +P L+ + + N  I                
Sbjct: 103 SSLK-DLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT--------------D 145

Query: 404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463
           +T L  L  L+ L+LE  Q+SD  + PL+   +L +L L    ++D+    L+ L  L  
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDV 201

Query: 464 LSIRDAVLTNSGLGSFKP---PRSLKLLD 489
           L +      N  +        P ++K  D
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 3e-18
 Identities = 47/254 (18%), Positives = 92/254 (36%), Gaps = 48/254 (18%)

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
             K  L +  +T       + L ++  +      +  +  + +Q L  +  L L G++++
Sbjct: 23  TIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT 78

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPL 256
           +     L     L +L L    +  L ++     L+ L+L +  I  I  L         
Sbjct: 79  D--IKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ---- 132

Query: 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD 316
                                   L  L + N+ ++    L+++  L+ L L  + I D 
Sbjct: 133 ------------------------LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD- 167

Query: 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD---YAISYMSM 373
            +  +A +   L+NL LS    S   +  LA  L NL++L L   +  +      S + +
Sbjct: 168 -IVPLAGLT-KLQNLYLSKNHISD--LRALA-GLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 374 MPSLKFIDISNTDI 387
             ++K  D S    
Sbjct: 223 PNTVKNTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 1e-15
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 50/287 (17%)

Query: 108 LWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS 167
           ++         + +L +   VTD        +++++++  + + + +  +  +  L N++
Sbjct: 14  IFPDDAFAETIKDNLKKK-SVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVT 68

Query: 168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL 227
            L L G  +TD+  + L  L  L +L L  +++ +   + LK   +L  L+L   G++ +
Sbjct: 69  KLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI 124

Query: 228 PNISS---LECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 282
             +     LE L L N  I  I  L                                 L 
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITVLSRLTK----------------------------LD 156

Query: 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
            L + ++ +S    L  +  L++L LS + I D  +  +A +  NL  L L +    +  
Sbjct: 157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK-NLDVLELFSQECLN-- 211

Query: 343 VGILAGHLPNLEIL-SLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 388
                 H  NL +  ++  T         +S     +  ++     +
Sbjct: 212 --KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 9e-11
 Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 17/166 (10%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           L   + L  L + + + +    L +L  +  LK L L     ++D  +  L+ +  LE L
Sbjct: 83  LTNLKNLGWLFLDENK-IKD--LSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESL 136

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
           +L    +T   I +LS L  L  L L    ++D  +  L  LTKL+ L L  + +S+  A
Sbjct: 137 YLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRA 192

Query: 206 AVLKMFPRLSFLNLAWTGVT-----KLPNISSLECLNLSNCTIDSI 246
             L     L  L L              N+     +  ++ ++ + 
Sbjct: 193 --LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 4e-10
 Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 10/160 (6%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
            L  +  L+ L L    K+TD  +  L  ++ L+ L L +  ++   I  L+ L  L  L
Sbjct: 126 GLVHLPQLESLYLGNN-KITD--ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNL 180

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA---AVLKMFPRLSFLNLAWTGVTK 226
            L    ++DL  R+L  L  L+ L+L+  +  N+     + L +   +   + +      
Sbjct: 181 YLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 227 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
           + +    E  N+     +   E +        I  A   F
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 413 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 472
           +       T +    +FP   F E I  +L+  S+TD      + L+ +  +   ++ + 
Sbjct: 1   MGETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 473 N-SGLGSFKPPRSLKLLDLHG 492
           +  G+       ++  L L+G
Sbjct: 57  SVQGIQYLP---NVTKLFLNG 74

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 92.1 bits (229), Expect = 3e-20
 Identities = 51/397 (12%), Positives = 119/397 (29%), Gaps = 87/397 (21%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSI-----STLEKLWLSETGLTADGIALLSSLQ 164
             +    +  LDLS    +       L+       +++  L LS   L       L    
Sbjct: 17  FTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-- 73

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
                          +L ++     +  L+L G+ +S + +  L                
Sbjct: 74  ---------------ILAAIP--ANVTSLNLSGNFLSYKSSDEL-------------VKT 103

Query: 225 TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284
                  ++  L+L           +++ +                +AF  +  S+ S L
Sbjct: 104 LAAIP-FTITVLDLGWNDF-----SSKSSSEFK-------------QAFSNLPASITS-L 143

Query: 285 DVSNSSLSRFC-------FLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNL 333
           ++  + L                  +  L+L  + +   +     + +A + A++ +L+L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203

Query: 334 SNTRFSSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM----PSLKFIDISNT 385
           S           LA        ++  L+L    +   ++  + ++      L+ + +   
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 386 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE-----LIHL 440
            +K     +  E        A  N+  +  ++    ++  +   P+S             
Sbjct: 264 IVK----NMSKE-QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG 477
           SL N  L     HQ +         +R+++ T   L 
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 37/226 (16%)

Query: 296 FLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLRNLNLSNTRFSSAGVGILAGHLP 351
           F +    +  LDLS + +   S     +  A   A++ +LNLS           L   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 352 ----NLEILSLSGTQIDDYAISYMSMM-----PSLKFIDISNTDIKGFIQQVGAETDLVL 402
               N+  L+LSG  +   +   +         ++  +D+   D         +++    
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-------SSKSSSEF 129

Query: 403 SLTALQNLN-HLERLNLEQTQVSDATLFPLSTF-----KELIHLSLRNASLTDVSLHQLS 456
              A  NL   +  LNL    +   +   L          +  L+LR  +L   +  +L+
Sbjct: 130 K-QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188

Query: 457 SL-----SKLTNLSIRDAVLTNSGLGSF-----KPPRSLKLLDLHG 492
                  + +T+L +   +L               P  +  L+L  
Sbjct: 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 42/245 (17%), Positives = 87/245 (35%), Gaps = 43/245 (17%)

Query: 281 LSFLDVSNSSLSR-------FCFLTQMKALEHLDLSSSMIGDDSV----EMVACVGANLR 329
           ++ LD+S ++L           F     ++  L+LS + +G  +     +++A + AN+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 330 NLNLSNTRFSSAGVGILAGHLPN----LEILSLSGTQIDDYAISYMSMM-----PSLKFI 380
           +LNLS    S      L   L      + +L L        + S           S+  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 381 DISNTDIKGFIQQVGAETDLVLSLTALQNLN-HLERLNLEQTQVSDATLFPLSTF----- 434
           ++   D+       G ++   L    L  +  ++  LNL    ++      L+ F     
Sbjct: 144 NLRGNDL-------GIKSSDELI-QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 435 KELIHLSLRNASLTDVSLHQLSSL-----SKLTNLSIRDAVLTNSGL----GSFKPPRSL 485
             +  L L    L   S  +L+ +     + + +L++    L    L          + L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 486 KLLDL 490
           + + L
Sbjct: 256 QTVYL 260

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 29/263 (11%), Positives = 71/263 (26%), Gaps = 50/263 (19%)

Query: 92  LRSLNVADCRRVTSSALWALTGM-----TCLKELDLSRCVKVTDAGMKHLLSI-----ST 141
           +  L++      +S +              +  L+L     +       L+ I     + 
Sbjct: 111 ITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPAN 168

Query: 142 LEKLWLSETGLTADGIALLSSL-----QNLSVLDLGGLPVTDLVLRSL-----QVLTKLE 191
           +  L L    L +   A L+        +++ LDL    +       L      +   + 
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 192 YLDLWGSQVSNRG----AAVLKMFPRLSFLNLAWTGVTK------------LPNISSLEC 235
            L+L  + +          +      L  + L +  V               PNI  +  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 236 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC 295
           ++ +   I        +  P++   +   +   +      +    L F     +++    
Sbjct: 289 VDKNGKEI-----HPSHSIPISN-LIRELSGKADV---PSLLNQCLIFAQKHQTNIED-- 337

Query: 296 FLTQMKALEHLDLSSSMIGDDSV 318
            L     L     +   + +   
Sbjct: 338 -LNIPDELRESIQTCKPLLEHHH 359

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.1 bits (229), Expect = 7e-20
 Identities = 63/336 (18%), Positives = 111/336 (33%), Gaps = 47/336 (13%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
              +LDLG   +  L          LE L+L  + VS            L  L L    +
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 225 TKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279
             +P      +S+L  L++S   I  +L+                 F +           
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDY---------------MFQD---------LY 128

Query: 280 LLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
            L  L+V +     +S   F + + +LE L L    +     E ++ +   L  L L + 
Sbjct: 129 NLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHL 186

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGA 396
             ++         L  L++L +S     D          +L  + I++ ++         
Sbjct: 187 NINAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-------- 237

Query: 397 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456
                +   A+++L +L  LNL    +S      L     L  + L    L  V  +   
Sbjct: 238 ----AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
            L+ L  L++    LT      F    +L+ L L  
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 59/339 (17%), Positives = 117/339 (34%), Gaps = 73/339 (21%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
                  L+EL+L+               +S +E                 ++L NL  L
Sbjct: 51  EFASFPHLEELELNEN------------IVSAVEP-------------GAFNNLFNLRTL 85

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP- 228
            L    +  + L     L+ L  LD+  +++      + +    L  L +    +  +  
Sbjct: 86  GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145

Query: 229 ----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284
                ++SLE L L  C + SI                        EA  ++    L  L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSI----------------------PTEALSHLHG--LIVL 181

Query: 285 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
            + + +++        ++  L+ L++S      D++      G NL +L++++   ++  
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 402
              +  HL  L  L+LS   I     S +  +  L+ I +    +             V+
Sbjct: 241 YLAVR-HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA------------VV 287

Query: 403 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 441
              A + LN+L  LN+   Q++       S F  + +L 
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTT---LEESVFHSVGNLE 323

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 62/286 (21%), Positives = 108/286 (37%), Gaps = 42/286 (14%)

Query: 87  GAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTL 142
           GAF  L +L     R  R+    L   TG++ L +LD+S    V + D   + L +   L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN---L 130

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
           + L + +  L        S L +L  L L    +T +   +L  L  L  L L    ++ 
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 203 RGAAVLKMFPRLSFLNLA-WTGVTKLPNIS----SLECLNLSNCTIDSILEGNENKAPLA 257
                 K   RL  L ++ W  +  +        +L  L++++C + ++           
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV----------- 239

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGD 315
                         A  +     L FL++S + +S      L ++  L+ + L    +  
Sbjct: 240 -----------PYLAVRH--LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-- 284

Query: 316 DSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
             VE  A  G   LR LN+S  + ++    +    + NLE L L  
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS-VGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 20/199 (10%)

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 362
              LDL  + I   + +  A    +L  L L+    S+   G     L NL  L L   +
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNR 91

Query: 363 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-- 420
           +    +   + + +L  +DIS   I             +L     Q+L +L+ L +    
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIV------------ILLDYMFQDLYNLKSLEVGDND 139

Query: 421 -TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
              +S      L++   L  L+L   +LT +    LS L  L  L +R   +      SF
Sbjct: 140 LVYISHRAFSGLNS---LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 480 KPPRSLKLLDLHGGWLLTE 498
           K    LK+L++     L  
Sbjct: 197 KRLYRLKVLEISHWPYLDT 215

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 375 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 434
              + +D+    IK             L+     +  HLE L L +  VS       +  
Sbjct: 32  TETRLLDLGKNRIK------------TLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79

Query: 435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
             L  L LR+  L  + L   + LS LT L I +  +       F+   +LK L++  
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 52/325 (16%), Positives = 118/325 (36%), Gaps = 75/325 (23%)

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
             K+   ++ +T       + L  ++ L   G  VT +    +Q L  L  L+L  +Q++
Sbjct: 21  AIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT 76

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISL 261
           +                     +  L N++ +  L LS   + ++       A L     
Sbjct: 77  D---------------------LAPLKNLTKITELELSGNPLKNV----SAIAGLQS--- 108

Query: 262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV 321
                              +  LD++++ ++    L  +  L+ L L  + I +  +  +
Sbjct: 109 -------------------IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN--ISPL 147

Query: 322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381
           A +  NL+ L++ N + S   +  LA +L  L  L     +I D  IS ++ +P+L  + 
Sbjct: 148 AGL-TNLQYLSIGNAQVSD--LTPLA-NLSKLTTLKADDNKISD--ISPLASLPNLIEVH 201

Query: 382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 441
           + N  I                ++ L N ++L  + L    +++           ++   
Sbjct: 202 LKNNQIS--------------DVSPLANTSNLFIVTLTNQTITN--QPVFYNNNLVVPNV 245

Query: 442 LRNASLTDVSLHQLSSLSKLTNLSI 466
           ++  S   ++   +S      + ++
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 79/322 (24%)

Query: 184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSN 240
              L     +    S V++           ++ L+   TGVT +  +    +L  L L +
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 241 CTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300
             I  +       APL  ++                    ++ L++S + L     +  +
Sbjct: 73  NQITDL-------APLKNLTK-------------------ITELELSGNPLKNVSAIAGL 106

Query: 301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
           ++++ LDL+S+ I D +               L+               L NL++L L  
Sbjct: 107 QSIKTLDLTSTQITDVT--------------PLAG--------------LSNLQVLYLDL 138

Query: 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 420
            QI +  IS ++ + +L+++ I N  +                LT L NL+ L  L  + 
Sbjct: 139 NQITN--ISPLAGLTNLQYLSIGNAQVS--------------DLTPLANLSKLTTLKADD 182

Query: 421 TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 480
            ++SD  + PL++   LI + L+N  ++DVS   L++ S L  +++ +  +TN  +    
Sbjct: 183 NKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 481 PPRSLKLLDLHGGWLLTEDAIL 502
                 ++    G  +    I 
Sbjct: 239 NLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 52/281 (18%), Positives = 106/281 (37%), Gaps = 41/281 (14%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L +       +   +       +  +  L       VT   ++ +  ++ L  L L +  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTT--IEGVQYLNNLIGLELKDNQ 74

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           +T   +A L +L  ++ L+L G P+ +  + ++  L  ++ LDL  +Q+++     L   
Sbjct: 75  IT--DLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD--VTPLAGL 128

Query: 212 PRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN 268
             L  L L    +T +  ++   +L+ L++ N  +  +        PLA +         
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-------TPLANL--------- 172

Query: 269 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 328
                     S L+ L   ++ +S    L  +  L  + L ++ I D  V  +A    NL
Sbjct: 173 ----------SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD--VSPLANTS-NL 219

Query: 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369
             + L+N   ++  V      +    +   SG  I    IS
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 16/210 (7%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           +     L  L + D + +T   L  L  +T + EL+LS    + +  +  +  + +++ L
Sbjct: 59  VQYLNNLIGLELKDNQ-ITD--LAPLKNLTKITELELSGN-PLKN--VSAIAGLQSIKTL 112

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
            L+ T +T   +  L+ L NL VL L    +T+  +  L  LT L+YL +  +QVS+   
Sbjct: 113 DLTSTQIT--DVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--L 166

Query: 206 AVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLA 262
             L    +L+ L      ++ +  ++   +L  ++L N  I  +     N + L  ++L 
Sbjct: 167 TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLT 225

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLS 292
             T  N+   +             S + ++
Sbjct: 226 NQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 418 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGL 476
            + T ++   +FP       I ++   +++TD      + L  +T LS     +T   G+
Sbjct: 4   TQPTAINV--IFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGV 59

Query: 477 GSFKPPRSLKLLDLHG 492
                  +L  L+L  
Sbjct: 60  QYLN---NLIGLELKD 72

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 54/271 (19%), Positives = 97/271 (35%), Gaps = 57/271 (21%)

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264
              F      NL    VT     +   S++ +  +N  I S+ +G +             
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQY------------ 66

Query: 265 TFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV 324
              N            ++ L ++ + L+    L  +K L  L L  + + D  +  +  +
Sbjct: 67  -LPN------------VTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSSLKDL 111

Query: 325 GANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382
              L++L+L +   S      + G  HLP LE L L   +I D  I+ +S +  L  + +
Sbjct: 112 -KKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSL 163

Query: 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 442
            +  I                +  L  L  L+ L L +  +SD  L  L+  K L  L L
Sbjct: 164 EDNQIS--------------DIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 207

Query: 443 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 473
            +    +  ++  S+L     +   D  L  
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 48/261 (18%)

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195
             + +   K  L +  +T       + L ++  +      +  +  + +Q L  +  L L
Sbjct: 20  DDAFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL 75

Query: 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGN 250
            G+++++     L     L +L L    V  L ++     L+ L+L +  I  I  L   
Sbjct: 76  NGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 310
                                         L  L + N+ ++    L+++  L+ L L  
Sbjct: 134 PQ----------------------------LESLYLGNNKITDITVLSRLTKLDTLSLED 165

Query: 311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 370
           + I    +  +A +   L+NL LS    S   +  LA  L NL++L L   +  +  I++
Sbjct: 166 NQI--SDIVPLAGL-TKLQNLYLSKNHISD--LRALA-GLKNLDVLELFSQECLNKPINH 219

Query: 371 MS---MMPSLKFIDISNTDIK 388
            S   +  ++K  D S    +
Sbjct: 220 QSNLVVPNTVKNTDGSLVTPE 240

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 49/264 (18%), Positives = 101/264 (38%), Gaps = 45/264 (17%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170
                   + +L +   VTD        +++++++  + + + +  +  +  L N++ L 
Sbjct: 20  DDAFAETIKDNLKKK-SVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI 230
           L G  +TD+  + L  L  L +L L  ++V +   + LK   +L  L+L   G++ +  +
Sbjct: 75  LNGNKLTDI--KPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 231 S---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285
                LE L L N  I  I  L                                 L  L 
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTK----------------------------LDTLS 162

Query: 286 VSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI 345
           + ++ +S    L  +  L++L LS + I D  +  +A +  NL  L L +    +  +  
Sbjct: 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLK-NLDVLELFSQECLNKPINH 219

Query: 346 LAGHLPNLEILSLSGTQIDDYAIS 369
            +  +    + +  G+ +    IS
Sbjct: 220 QSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 13/178 (7%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L+SL++     ++   +  L  +  L+ L L    K+TD  +  L  ++ L+ L L +  
Sbjct: 114 LKSLSLEHNG-ISD--INGLVHLPQLESLYLGNN-KITD--ITVLSRLTKLDTLSLEDNQ 167

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           ++   I  L+ L  L  L L    ++DL  R+L  L  L+ L+L+  +  N+        
Sbjct: 168 ISD--IVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 212 PRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
              + +      +     IS     E  N+     +   E +        I  A   F
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           L   + L  L + + + V    L +L  +  LK L L     ++D  +  L+ +  LE L
Sbjct: 86  LANLKNLGWLFLDENK-VKD--LSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESL 139

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGA 205
           +L    +T   I +LS L  L  L L    ++D  +  L  LTKL+ L L  + +S+  A
Sbjct: 140 YLGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRA 195

Query: 206 AVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI 246
             L     L  L L        P     N+     +  ++ ++ + 
Sbjct: 196 --LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 90.1 bits (224), Expect = 2e-19
 Identities = 61/363 (16%), Positives = 134/363 (36%), Gaps = 63/363 (17%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           ++++  + +    + +     ALL S + + +L+L  L + ++   +      ++ L + 
Sbjct: 42  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 101

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE 251
            + +      V +  P L+ L L    ++ LP     N   L  L++SN  ++ I +   
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-- 159

Query: 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311
                        TF           T+ L  L +S++ L+     + + +L H ++S +
Sbjct: 160 -------------TFQA---------TTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYN 196

Query: 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371
           ++   ++ +       +  L+ S+   +     +       L IL L    + D   +++
Sbjct: 197 LLSTLAIPI------AVEELDASHNSINV----VRGPVNVELTILKLQHNNLTD--TAWL 244

Query: 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS--DATLF 429
              P L  +D+S  +++             +       +  LERL +   ++   +    
Sbjct: 245 LNYPGLVEVDLSYNELE------------KIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292

Query: 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 489
           P+ T   L  L L +  L  V         +L NL +    +    L +     +LK L 
Sbjct: 293 PIPT---LKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLT 345

Query: 490 LHG 492
           L  
Sbjct: 346 LSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 28/212 (13%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +D+    +        +   + +   +S +      ++      +  LNL++ +      
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDT 86

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403
              A     ++ L +    I          +P L  + +   D+              L 
Sbjct: 87  YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------------SLP 133

Query: 404 LTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 460
                N   L  L++      ++ D T    +    L +L L +  LT V L  + SL  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT---SLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 461 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
                     ++ + L +   P +++ LD   
Sbjct: 191 AN--------VSYNLLSTLAIPIAVEELDASH 214

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 88.6 bits (220), Expect = 8e-19
 Identities = 66/371 (17%), Positives = 132/371 (35%), Gaps = 41/371 (11%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTA-DGIALLSSLQNLSVL 169
              +  L  LD      +TD  M  +  ++ L KL  +   +T  D    LS   NL+ L
Sbjct: 38  EEQLATLTSLDCHNS-SITD--MTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYL 90

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP- 228
                 +T+L    +  LTKL YL+   ++++      +   P L++LN A   +T++  
Sbjct: 91  ACDSNKLTNL---DVTPLTKLTYLNCDTNKLTK---LDVSQNPLLTYLNCARNTLTEIDV 144

Query: 229 -NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 287
            + + L  L+       + L+       L  +  +         +       LL+ L+  
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSFNKITELDVSQN----KLLNRLNCD 199

Query: 288 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA 347
            +++++   L Q   L  LD SS+ +    +++       L   + S    +     +  
Sbjct: 200 TNNITKL-DLNQNIQLTFLDCSSNKL--TEIDVTPLT--QLTYFDCSVNPLTE----LDV 250

Query: 348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407
             L  L  L    T + +  +++ + +   +            +        L      +
Sbjct: 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKE-LDVTHNTQLYLLDCQAAGI 309

Query: 408 QNLN-----HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 462
             L+      L  L L  T++++     +S   +L  LS  NA + D S   +  +  L 
Sbjct: 310 TELDLSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQDFSS--VGKIPALN 364

Query: 463 NLSIRDAVLTN 473
           N    +     
Sbjct: 365 NNFEAEGQTIT 375

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 7e-16
 Identities = 49/353 (13%), Positives = 101/353 (28%), Gaps = 68/353 (19%)

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVS 201
                 +   + A        L  L+ LD     +TD+    ++ LT L  L    + ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKI 259
                 L     L++L      +T L    ++ L  LN     +  +             
Sbjct: 78  T---LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL------ 128

Query: 260 SLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 319
                                L++L+ + ++L+    ++    L  LD   +        
Sbjct: 129 ---------------------LTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLD- 165

Query: 320 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 379
                   L  L+ S  + +     +       L  L+     I    ++       L F
Sbjct: 166 --VTPQTQLTTLDCSFNKITE----LDVSQNKLLNRLNCDTNNITKLDLNQN---IQLTF 216

Query: 380 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 439
           +D S+  +          T++ ++      L  L   +     +++     +ST  +L  
Sbjct: 217 LDCSSNKL----------TEIDVT-----PLTQLTYFDCSVNPLTE---LDVSTLSKLTT 258

Query: 440 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           L      L ++    L+  ++L                       L LLD   
Sbjct: 259 LHCIQTDLLEID---LTHNTQLIYFQAEG--CRKIKELDVTHNTQLYLLDCQA 306

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 50/319 (15%), Positives = 96/319 (30%), Gaps = 75/319 (23%)

Query: 89  FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
             +   L   DC          +T  T L  LD S               I+ L+     
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN------------KITELD----- 186

Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVL 208
                      +S  + L+ L+     +T L L       +L +LD   ++++      +
Sbjct: 187 -----------VSQNKLLNRLNCDTNNITKLDLNQ---NIQLTFLDCSSNKLTE---IDV 229

Query: 209 KMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTT 265
               +L++ + +   +T+L    +S L  L+     +  I L  N               
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ------------- 276

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 325
                          L +         +   +T    L  LD  ++ I +  +       
Sbjct: 277 ---------------LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN---- 317

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
             L  L L+NT  +     +   H   L+ LS     I D   S +  +P+L     +  
Sbjct: 318 PKLVYLYLNNTELTE----LDVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEG 371

Query: 386 DIKGFIQQVGAETDLVLSL 404
                 ++      L +++
Sbjct: 372 QTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 23/142 (16%)

Query: 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410
            N      +  ++          + +L  +D  N+ I                +T ++ L
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--------------DMTGIEKL 63

Query: 411 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 470
             L +L      ++      LS    L +L+  +  LT++    ++ L+KLT L+     
Sbjct: 64  TGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNK 117

Query: 471 LTNSGLGSFKPPRSLKLLDLHG 492
           LT   +        L  L+   
Sbjct: 118 LTKLDVSQNP---LLTYLNCAR 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.5 bits (214), Expect = 6e-18
 Identities = 61/363 (16%), Positives = 134/363 (36%), Gaps = 63/363 (17%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           ++++  + +    + +     ALL S + + +L+L  L + ++   +      ++ L + 
Sbjct: 48  ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG 107

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE 251
            + +      V +  P L+ L L    ++ LP     N   L  L++SN  ++ I +   
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-- 165

Query: 252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311
                        TF           T+ L  L +S++ L+     + + +L H ++S +
Sbjct: 166 -------------TFQA---------TTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYN 202

Query: 312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 371
           ++   ++ +       +  L+ S+   +     +       L IL L    + D   +++
Sbjct: 203 LLSTLAIPI------AVEELDASHNSINV----VRGPVNVELTILKLQHNNLTD--TAWL 250

Query: 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS--DATLF 429
              P L  +D+S  +++             +       +  LERL +   ++   +    
Sbjct: 251 LNYPGLVEVDLSYNELE------------KIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298

Query: 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 489
           P+ T   L  L L +  L  V         +L NL +    +    L +     +LK L 
Sbjct: 299 PIPT---LKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLT 351

Query: 490 LHG 492
           L  
Sbjct: 352 LSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 2e-14
 Identities = 65/370 (17%), Positives = 120/370 (32%), Gaps = 72/370 (19%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
            L     ++ L+L+   ++ +          T++KL++    +      +  ++  L+VL
Sbjct: 70  LLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            L    ++ L         KL  L +      N     L+     +F             
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSN----NN----LERIEDDTFQAT---------- 170

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289
            +SL+ L LS+  +  +                     +            L   +VS +
Sbjct: 171 -TSLQNLQLSSNRLTHVDLSL---------------IPS------------LFHANVSYN 202

Query: 290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH 349
            LS          +E LD S + I  + V         L  L L +   +         +
Sbjct: 203 LLSTLAIPIA---VEELDASHNSI--NVVRGPVN--VELTILKLQHNNLTDTAW---LLN 252

Query: 350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN---TDIKGFIQQVGAETDLVLS--- 403
            P L  + LS  +++         M  L+ + ISN     +  + Q +     L LS   
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312

Query: 404 LTALQ----NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 459
           L  ++      + LE L L+   +       LST   L +L+L +      SL  L    
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWDCNSLRAL--FR 367

Query: 460 KLTNLSIRDA 469
            +   ++ DA
Sbjct: 368 NVARPAVDDA 377

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 30/212 (14%), Positives = 65/212 (30%), Gaps = 28/212 (13%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +D+    +        +   + +   +S +      ++      +  LNL++ +      
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDT 92

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403
              A     ++ L +    I          +P L  + +   D+              L 
Sbjct: 93  YAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------------SLP 139

Query: 404 LTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 460
                N   L  L++      ++ D T         L +L L +  LT V L  + SL  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVDLSLIPSLFH 196

Query: 461 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
                     ++ + L +   P +++ LD   
Sbjct: 197 AN--------VSYNLLSTLAIPIAVEELDASH 220

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 53/406 (13%), Positives = 118/406 (29%), Gaps = 57/406 (14%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS----RCVKVTDAGMKHL----L 137
               + L  + + +C  +T      L  +  L+ L+++           A    L     
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 138 SISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           +   ++  ++    L      A L  +  L +LD     V    L +     KL  L L 
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLD 603

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGN 250
            +Q+            ++  L  +   +  +P      ++  +  ++ S   I S     
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN- 662

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL 308
                    S+     IN             S + +S + + +F          +  + L
Sbjct: 663 ------ISCSMDDYKGIN------------ASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 309 SS---SMIGDDSVEMVACVGANLRNL---NLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 362
           S+   + I ++S++       N   L   +L   + +S      A  LP L  + +S   
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 363 IDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT 421
                  +       LK   I +       + +          T +     L +L +   
Sbjct: 765 FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILR------QWPTGITTCPSLIQLQIGSN 816

Query: 422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 467
            +            +L  L + +     + +  +    +     + 
Sbjct: 817 DIRK---VDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 51/421 (12%), Positives = 126/421 (29%), Gaps = 40/421 (9%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL 145
           +G    L+ L+        S  L+    +T     +  +           L     L   
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELT-PDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 146 WLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL------VLRSLQVLTKLEYLDLWGSQ 199
            L +  +       +  ++  S + L    + +L      + +++Q LTKL+ +    S 
Sbjct: 402 DLLQDAIN--RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAK 258
            +    AV        +            N+  L  + L NC   + L       P L  
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 259 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV 318
           +++A     N            +S   +                ++   +  + + +   
Sbjct: 520 LNIAC----N----------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378
                    L  L+  + +     +    G    L  L L   QI++    + +    ++
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRH--LEAF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622

Query: 379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI 438
            +  S+  +K       A+     S+  + +++      +     + +            
Sbjct: 623 GLGFSHNKLKYIPNIFNAK-----SVYVMGSVD-FSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 439 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-------SGLGSFKPPRSLKLLDLH 491
            ++L    +        ++ S ++ + + + ++T+          G++K    L  +DL 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 492 G 492
            
Sbjct: 737 F 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 27/214 (12%), Positives = 56/214 (26%), Gaps = 24/214 (11%)

Query: 296 FLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE 354
            L     +  L L+     G     +       L+ L+      + +G       L    
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLT--ELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 355 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT--------- 405
                      Y   ++     L   D+    I    +    + D  +SL          
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 406 -------ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 458
                  A+Q L  L+ +    +     T   ++   E  +         +      S+L
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPF---TYDNIAVDWEDANSDYAK--QYENEELSWSNL 490

Query: 459 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
             LT++ + +                L+ L++  
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 8e-18
 Identities = 81/422 (19%), Positives = 149/422 (35%), Gaps = 41/422 (9%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCV--KVTDAGMKHLLSISTLE-KLWLS 148
           L+ LNVA     +       + +T L+ LDLS      +    ++ L  +  L   L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 149 ETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLR-SLQVLTKLEYLDLWGSQVSNRG--- 204
              +          +  L  L L     +  V++  +Q L  LE   L   +  N G   
Sbjct: 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 205 ---AAVLKMFPRLSFLNLAWTGVTKLPN--------ISSLECLNLSNCTIDSILEGNENK 253
               + L+    L+        +    +        ++++   +L + TI+ + + + N 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI 313
                + L       +   F  ++   L  L  +++          + +LE LDLS + +
Sbjct: 305 G-WQHLELVN----CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 314 GDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD-YAISYM 371
                   +  G  +L+ L+LS     +     L   L  LE L    + +      S  
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVF 417

Query: 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FP 430
             + +L ++DIS+T  +     +               L+ LE L +      +  L   
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGI------------FNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 490
            +  + L  L L    L  +S    +SLS L  L++    L +   G F    SL+ + L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525

Query: 491 HG 492
           H 
Sbjct: 526 HT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 71/370 (19%), Positives = 121/370 (32%), Gaps = 58/370 (15%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
            + + L LS   L   G     S   L VLDL    +  +   + Q L+ L  L L G+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKA 254
           + +           L  L    T +  L      ++ +L+ LN+++  I S         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL------ 141

Query: 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALE-HLDL 308
                      F N          + L  LD+S++ +          L QM  L   LDL
Sbjct: 142 --------PEYFSN---------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL------SGTQ 362
           S + +  + ++  A     L  L L N   S   +      L  LE+  L      +   
Sbjct: 185 SLNPM--NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 363 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 422
           ++ +  S +  + +L   +     +  ++            +     L ++   +L    
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDD---------IIDLFNCLTNVSSFSLVSVT 293

Query: 423 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 482
           +    +   S      HL L N         +L SL +LT  S +          S    
Sbjct: 294 IE--RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-----GGNAFSEVDL 346

Query: 483 RSLKLLDLHG 492
            SL+ LDL  
Sbjct: 347 PSLEFLDLSR 356

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 70/410 (17%), Positives = 134/410 (32%), Gaps = 53/410 (12%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           +      L+ LDLSRC ++         S+S L  L L+   + +  +   S L +L  L
Sbjct: 47  SFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLP 228
                 +  L    +  L  L+ L++  + + + +          L  L+L+   +  + 
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 229 NIS---------SLECLNLSNCTIDSI--------------LEGNENKAPLAKISLAGTT 265
                           L+LS   ++ I              L  N +   + K  + G  
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG 325
            +      L    +  +      S+L   C LT    +E   L+      D +  +    
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT----IEEFRLAYLDYYLDDIIDLFNCL 281

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
            N+ + +L +                +LE+++    Q           + SLK +  ++ 
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSN 335

Query: 386 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK--ELIHLSLR 443
                            +  +  +L  LE L+L +  +S       S F    L +L L 
Sbjct: 336 KGG--------------NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 444 NASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 492
              +  +S      L +L +L  + + L   S    F   R+L  LD+  
Sbjct: 382 FNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 46/301 (15%)

Query: 76  NSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135
             +D      +  F  L +++      VT   +   +     + L+L  C          
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--- 321

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTKLEYL 193
            L + +L++L  +              L +L  LDL    L       +S    T L+YL
Sbjct: 322 -LKLKSLKRLTFTSNKGG--NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSIL 247
           DL  + V    +  L +  +L  L+   + + ++       ++ +L  L++S+       
Sbjct: 379 DLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALE 304
            G             G +               L  L ++ +S          T+++ L 
Sbjct: 438 NG----------IFNGLS--------------SLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 305 HLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
            LDLS   +  + +   A     +L+ LN+++ +  S   GI    L +L+ + L     
Sbjct: 474 FLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR-LTSLQKIWLHTNPW 530

Query: 364 D 364
           D
Sbjct: 531 D 531

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 22/242 (9%)

Query: 259 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGD 315
           I+        ++    +     +  +D+SNS +        L+Q   L++L L    + D
Sbjct: 73  IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 132

Query: 316 DSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYM-- 371
             V  +A   +NL  LNLS  + FS   +  L      L+ L+LS      +  +     
Sbjct: 133 PIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191

Query: 372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFP 430
            +  ++  +++S     G+ + +       LS    +   +L  L+L     + +     
Sbjct: 192 HVSETITQLNLS-----GYRKNL---QKSDLSTLV-RRCPNLVHLDLSDSVMLKNDCFQE 242

Query: 431 LSTFKELIHLSLRN-ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD 489
                 L HLSL     +   +L +L  +  L  L +   ++ +  L   K   +L  L 
Sbjct: 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-IVPDGTLQLLK--EALPHLQ 299

Query: 490 LH 491
           ++
Sbjct: 300 IN 301

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 76.1 bits (187), Expect = 4e-15
 Identities = 39/259 (15%), Positives = 97/259 (37%), Gaps = 29/259 (11%)

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
           SL   LD++  +L       ++ +   +         D           +++++LSN+  
Sbjct: 47  SLWQTLDLTGKNLHPDV-TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 105

Query: 339 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN----TDIKGFIQQV 394
             + +  +      L+ LSL G ++ D  ++ ++   +L  +++S     ++    +Q +
Sbjct: 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTL 163

Query: 395 GAE---------------TDLVLSLTALQNLNHLERLNLE--QTQVSDATLFPLSTF-KE 436
            +                T+  + +        + +LNL   +  +  + L  L      
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223

Query: 437 LIHLSLRN-ASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGW 494
           L+HL L +   L +    +   L+ L +LS+     +    L       +LK L + G  
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG-- 281

Query: 495 LLTEDAILQFCKMHPRIEV 513
           ++ +  +    +  P +++
Sbjct: 282 IVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 64/356 (17%), Positives = 110/356 (30%), Gaps = 74/356 (20%)

Query: 33  SLERLPAHLADSLLRHLIRRRLIFPSLLEV---FKHNAEAIELRGENSVDAEWMAYLGAF 89
           S + LP  L   +   L    L+   +  V   +   A    L     +  + +      
Sbjct: 8   SWDSLPDELLLGIFSCLCLPELL--KVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTG 65

Query: 90  RYLR--SLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL 147
           R L    +     R      L        ++ +DLS  V         L   S L+ L L
Sbjct: 66  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125

Query: 148 SETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSL-QVLTKLEYLDL-WGSQVSNRG 204
               L+   +  L+   NL  L+L G    ++  L++L    ++L+ L+L W    + + 
Sbjct: 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264
             V                V  +    ++  LNLS                         
Sbjct: 186 VQVA---------------VAHVS--ETITQLNLSGYR---------------------- 206

Query: 265 TFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS-SMIGDDSVEMVAC 323
                               ++  S LS      +   L HLDLS   M+ +D  +    
Sbjct: 207 -------------------KNLQKSDLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFQ 245

Query: 324 VGANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 378
           +   L++L+LS         +  L   +P L+ L + G   D         +P L+
Sbjct: 246 L-NYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 17/77 (22%), Positives = 31/77 (40%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L  L+++D   + +        +  L+ L LSRC  +    +  L  I TL+ L +    
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283

Query: 152 LTADGIALLSSLQNLSV 168
                  L  +L +L +
Sbjct: 284 PDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 33  SLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYL 92
           +L     +L  S L  L+RR    P+L+         ++L     +  +         YL
Sbjct: 201 NLSGYRKNLQKSDLSTLVRR---CPNLVH--------LDLSDSVMLKNDCFQEFFQLNYL 249

Query: 93  RSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGL 152
           + L+++ C  +    L  L  +  LK L +     V D  ++ L     L  L ++ +  
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLK--EALPHLQINCSHF 305

Query: 153 TADGIALLSSLQNLSVLDL 171
           T      + + +N  +  +
Sbjct: 306 TTIARPTIGNKKNQEIWGI 324

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 60/265 (22%)

Query: 208 LKMFPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI--LEGNENKAPLAKISLA 262
                     NL    VT L +      ++  N  N  I S+  ++   N          
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTN---------- 64

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
                             L  L +S++ +S    L  +  LE L ++ + + + +     
Sbjct: 65  ------------------LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN----G 102

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI 382
              A L  L L N          L  HL NLEILS+   ++    I  +  +  L+ +D+
Sbjct: 103 IPSACLSRLFLDNNELRD--TDSLI-HLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDL 157

Query: 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL-S 441
              +I               +   L  L  +  ++L   +  +    P+    EL    +
Sbjct: 158 HGNEIT--------------NTGGLTRLKKVNWIDLTGQKCVN---EPVKYQPELYITNT 200

Query: 442 LRNASLTDVSLHQLSSLSKLTNLSI 466
           +++     +S + +S+     +  +
Sbjct: 201 VKDPDGRWISPYYISNGGSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 36/249 (14%), Positives = 82/249 (32%), Gaps = 51/249 (20%)

Query: 224 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 283
           V   P +++    NL   ++  +     ++  L+                       +  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDL----VSQKELSG----------------------VQN 45

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
            +  NS++     +     L+ L LS + I D  +  +  +   L  L+++  R  +   
Sbjct: 46  FNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSPLKDL-TKLEELSVNRNRLKN--- 99

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 403
            +       L  L L   ++ D     +  + +L+ + I N  +K              S
Sbjct: 100 -LNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK--------------S 142

Query: 404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 463
           +  L  L+ LE L+L   ++++     L+  K++  + L      +  +     L     
Sbjct: 143 IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 464 LSIRDAVLT 472
           +   D    
Sbjct: 201 VKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 44/278 (15%)

Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216
           +     L N    +LG   VTDLV  S + L+ ++  +   S + +   A ++ F  L  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKE 67

Query: 217 LNLAWTGVTKLPNISS---LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           L+L+   ++ L  +     LE L+++   + ++  G  +                     
Sbjct: 68  LHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL-NGIPSAC------------------- 107

Query: 274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 333
                  LS L + N+ L     L  +K LE L + ++ +   S+ M+  + + L  L+L
Sbjct: 108 -------LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL--KSIVMLGFL-SKLEVLDL 157

Query: 334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---MMPSLKFIDISNTDIKGF 390
                ++   G L   L  +  + L+G +  +  + Y     +  ++K  D        +
Sbjct: 158 HGNEITN--TGGLT-RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY-Y 213

Query: 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 428
           I   G+  D  +        + +     E   V +   
Sbjct: 214 ISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEA 251

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 50/231 (21%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170
             G+    + +L +   VTD  +     +S ++      + + +  +A +    NL  L 
Sbjct: 15  DPGLANAVKQNLGKQ-SVTD--LVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI 230
           L    ++DL    L+ LTKLE L +  +++ N     +     LS L L    +    ++
Sbjct: 70  LSHNQISDL--SPLKDLTKLEELSVNRNRLKN--LNGIP-SACLSRLFLDNNELRDTDSL 124

Query: 231 S---SLECLNLSNCTIDSI--LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285
               +LE L++ N  + SI  L                                 L  LD
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFLSK----------------------------LEVLD 156

Query: 286 VSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
           +  + ++    LT++K +  +DL+     ++ V+           L ++NT
Sbjct: 157 LHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVK-------YQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD 170
           L  +  L+ L +    K+    +  L  +S LE L L    +T      L+ L+ ++ +D
Sbjct: 124 LIHLKNLEILSIRNN-KLKS--IVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWID 178

Query: 171 LGGLPVTDLVLRSLQVLTKLEYL-DLWGSQVSN 202
           L G    +  ++    L     + D  G  +S 
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDPDGRWISP 211

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 403 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 462
            +     L +  + NL +  V+D  L        + + +  N+++  ++   +   + L 
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLK 66

Query: 463 NLSIRDAVLTN-SGLGSFKPPRSLKLLDLHG 492
            L +    +++ S L        L+ L ++ 
Sbjct: 67  ELHLSHNQISDLSPLKDLT---KLEELSVNR 94

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 49/376 (13%), Positives = 104/376 (27%), Gaps = 94/376 (25%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           ++  ++E   L    +T +    +                       L     ++ + L 
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSV--------------------FAVLLEDDSVKEIVLS 40

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPL 256
           G+ +    A  L                  + +   LE    S+     +   +E    L
Sbjct: 41  GNTIGTEAARWLSEN---------------IASKKDLEIAEFSDIFTGRV--KDEIPEAL 83

Query: 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC------FLTQMKALEHLDLSS 310
             +  A                  L  + +S+++           FL++   LEHL L +
Sbjct: 84  RLLLQALLKCPK------------LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131

Query: 311 SMIGDDSVEMVA------------CVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEI 355
           + +G  +   +A                 LR++     R  +  +   A        L  
Sbjct: 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 356 LSLSGTQIDDYAISY-----MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410
           + +    I    I +     ++    LK +D+ +                 L+  AL++ 
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-------THLGSSALA-IALKSW 243

Query: 411 NHLERLNLEQTQVSD------ATLFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LS 459
            +L  L L    +S          F       L  L L+   +   ++  L +     + 
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303

Query: 460 KLTNLSIRDAVLTNSG 475
            L  L +     +   
Sbjct: 304 DLLFLELNGNRFSEED 319

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 50/349 (14%), Positives = 90/349 (25%), Gaps = 97/349 (27%)

Query: 59  LLEVFKHNAEAIELR-GENSVDAEWMAYLGAF----RYLRSLNVADCR---------RVT 104
           +  V   +    E+    N++  E   +L       + L     +D              
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSETGLTADGI-AL 159
              L AL     L  + LS          + L+      + LE L+L   GL       +
Sbjct: 84  RLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAA----VLKMFPRLS 215
             +LQ L+            V +  +    L  +    +++ N          +    L 
Sbjct: 143 ARALQELA------------VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190

Query: 216 FLNLAWTGVTK----------LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265
            + +   G+            L     L+ L+L + T       +   + LA        
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIA------ 239

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA--- 322
                                          L     L  L L+  ++       V    
Sbjct: 240 -------------------------------LKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 323 --CVGANLRNLNLSNTRFSSAGVGILA----GHLPNLEILSLSGTQIDD 365
                  L+ L L         V  L       +P+L  L L+G +  +
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKH----LLSISTLEKLWLSETGLTADG-IALLSSLQ 164
            L     LK LDL      T  G       L S   L +L L++  L+A G  A++ +  
Sbjct: 211 GLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 165 N-----LSVLDLGGLPVTDLVLRSL-----QVLTKLEYLDLWGSQVSNRGAAVLKM 210
                 L  L L    +    +R+L     + +  L +L+L G++ S     V ++
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 325

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357
            QM +L ++ L++  + D +  +      N+++L ++N   ++     ++G L NLE L 
Sbjct: 41  AQMNSLTYITLANINVTDLT-GIEYAH--NIKDLTINNIHATN--YNPISG-LSNLERLR 94

Query: 358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN 417
           + G  +    I  +S + SL  +DIS++                  LT +  L  +  ++
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD------------SILTKINTLPKVNSID 142

Query: 418 LEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468
           L     ++D  + PL T  EL  L+++   + D     +    KL  L    
Sbjct: 143 LSYNGAITD--IMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 28/169 (16%), Positives = 68/169 (40%), Gaps = 25/169 (14%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
               N  L  +  ++    I    + +L  ++L+   + D  ++ +    ++K + I+N 
Sbjct: 23  KAYLNGLLGQSSTAN----ITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76

Query: 386 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 445
                            +   +  L++LERL +    V+   +  LS    L  L + ++
Sbjct: 77  HAT--------------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 446 SLTDVSLHQLSSLSKLTNLSIRD-AVLTN-SGLGSFKPPRSLKLLDLHG 492
           +  D  L ++++L K+ ++ +     +T+   L +      LK L++  
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP---ELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 6e-15
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 12/159 (7%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L  + +A+   VT   L  +     +K+L ++     T+     +  +S LE+L +    
Sbjct: 46  LTYITLANIN-VTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGKD 99

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKM 210
           +T+D I  LS L +L++LD+      D +L  +  L K+  +DL     +++     LK 
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMPLKT 157

Query: 211 FPRLSFLNLAWTGVTKLPNIS---SLECLNLSNCTIDSI 246
            P L  LN+ + GV     I     L  L   + TI   
Sbjct: 158 LPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 69/223 (30%)

Query: 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
            ++SL  + L+N  +  +  G E                N            +  L ++N
Sbjct: 42  QMNSLTYITLANINVTDL-TGIEY-------------AHN------------IKDLTINN 75

Query: 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG 348
              + +  ++ +  LE L +    +  D +             NLS              
Sbjct: 76  IHATNYNPISGLSNLERLRIMGKDVTSDKIP------------NLSG------------- 110

Query: 349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS-NTDIKGFIQQVGAETDLVLSLTAL 407
            L +L +L +S +  DD  ++ ++ +P +  ID+S N  I                +  L
Sbjct: 111 -LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--------------DIMPL 155

Query: 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 450
           + L  L+ LN++   V D     +  F +L  L   + ++   
Sbjct: 156 KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 16/184 (8%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           ST +       G ++      + + +L+ + L  + VTD  L  ++    ++ L +    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIH 77

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVT--KLPNIS---SLECLNLSNCTI-DSILEGNENK 253
            +N     +     L  L +    VT  K+PN+S   SL  L++S+    DSIL      
Sbjct: 78  ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 254 APLAKISLAGTTFINEREAFLYIETSL--LSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311
             +  I L+    I +         +L  L  L++    +  +  +     L  L   S 
Sbjct: 136 PKVNSIDLSYNGAITDIMPL----KTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191

Query: 312 MIGD 315
            IG 
Sbjct: 192 TIGG 195

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 80.3 bits (198), Expect = 4e-16
 Identities = 64/385 (16%), Positives = 125/385 (32%), Gaps = 29/385 (7%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
            + +  +   ++++ L     +L  S  N+  LDL G P++ +    L   TKLE L+L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPL 256
            + +       L+    L  L+L    V +L    S+E L+ +N  I  +          
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG--K 122

Query: 257 AKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMI 313
             I LA    I           S + +LD+      +++          LEHL+L  + I
Sbjct: 123 KNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
               V+        L+ L+LS+ + +  G          +  +SL   ++     + +  
Sbjct: 182 --YDVKGQVVFA-KLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKA-LRF 235

Query: 374 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV--------SD 425
             +L+  D+          +     +  +   A Q +  L   N E+  V          
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 426 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-------KLTNLSIRDAVLTNSGLGS 478
               P      LI L  +  +L      +   L        +   +              
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 479 FKPPRSLKLLDLHGGWLLTEDAILQ 503
               ++   L+     L  + +  +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGR 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 56/346 (16%), Positives = 118/346 (34%), Gaps = 47/346 (13%)

Query: 159 LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
           +  +     +  +    +   +    Q    ++ LDL G+ +S   AA L  F +L  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 219 LAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLY 275
           L+   + +  ++   S+L  L+L+N  +  +L G                          
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS------------------------ 100

Query: 276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
                +  L  +N+++SR       +  +++ L+++ I         C  + ++ L+L  
Sbjct: 101 -----IETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKL 153

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN---TDIKGFIQ 392
               +     LA     LE L+L    I D  +    +   LK +D+S+     +    Q
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211

Query: 393 QVGAETDLVLS---LT----ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 445
                T + L    L     AL+   +LE  +L        TL    +  + +  ++   
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQ 270

Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 491
           ++  ++       +  T          +          +LK  +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 57/394 (14%), Positives = 123/394 (31%), Gaps = 54/394 (13%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPV 176
            K   ++    +  A      S   +++L LS   L+    A L+    L +L+L    +
Sbjct: 12  YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 177 TDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLE 234
            +     L+ L+ L  LDL  + V       L + P +  L+ A   ++++        +
Sbjct: 71  YET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 235 CLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 293
            + L+N  I  + + +E     +  + L          A L   +  L  L++  + +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183

Query: 294 FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL 353
                    L+ LDLSS+ +     E  +   A +  ++L N +       +      NL
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSA--AGVTWISLRNNKLVLIEKAL--RFSQNL 239

Query: 354 EILSLSG--------------------------TQIDDYAISYMSMMPSLKFIDISNTDI 387
           E   L G                           ++        ++     +      D+
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 388 -KGFIQQVGAETDLVLSLTALQN------------LNHLERLNLEQTQVSDATLFPLSTF 434
              F  ++ A      +L + Q                   ++  + Q            
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468
           +  I L  +  +L +   +   + ++L     + 
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 49/359 (13%), Positives = 98/359 (27%), Gaps = 23/359 (6%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           ++ L++      T +          L+ L+L     + D  +K  +  + L+ L LS   
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYD--VKGQVVFAKLKTLDLSSNK 202

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           L   G     S   ++ + L    +  +  ++L+    LE+ DL G+             
Sbjct: 203 LAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHC-------GT 253

Query: 212 PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 271
            R  F             +  L   N   CT+ ++                   F +   
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY-----CCEDLPAPFADRLI 308

Query: 272 AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 331
           A    E +LLS        L              +D           ++          L
Sbjct: 309 ALKRKEHALLSGQGSETERLECERE--NQARQREIDALKEQYRTVIDQVTLRK-QAKITL 365

Query: 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 391
                            H   L+          +   +     P      I     + ++
Sbjct: 366 EQKKKALDEQVSNGRRAHA-ELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424

Query: 392 QQVGAETDLVLSLTALQN-LNHLERLNLEQTQVSDATLFPLSTFK-ELIHLSLRNASLT 448
           +Q   + + +      Q+    L   N    +++      L++    L  L +R  +L 
Sbjct: 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 6e-16
 Identities = 100/451 (22%), Positives = 166/451 (36%), Gaps = 69/451 (15%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLE 143
           LG+   L+ LNV+         +     +  L+ LDLS          G         L+
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDL------GGLPVTDLVLRSLQVLTKLEYLDLWG 197
            L +S   ++  G   +S   NL  LD+       G+P        L   + L++LD+ G
Sbjct: 182 HLAISGNKIS--GDVDVSRCVNLEFLDVSSNNFSTGIP-------FLGDCSALQHLDISG 232

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVT-KLP--NISSLECLNLSNC----TIDSILEGN 250
           +++S   +  +     L  LN++       +P   + SL+ L+L+       I   L G 
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSL-----LSFLDVSNSSLSR---FCFLTQMKA 302
            +   L  + L+G  F         +         L  L +S+++ S       L +M+ 
Sbjct: 293 CDT--LTGLDLSGNHFYGA------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 303 LEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSL 358
           L+ LDLS     G+    +     A+L  L+LS+  FS  G     +       L+ L L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLS-ASLLTLDLSSNNFS--GPILPNLCQNPKNTLQELYL 401

Query: 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI-QQVGAETDL-VLSL----------TA 406
                       +S    L  + +S   + G I   +G+ + L  L L            
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 407 LQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464
           L  +  LE L L+   ++     P  LS    L  +SL N  LT      +  L  L  L
Sbjct: 462 LMYVKTLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 465 SIRDAVLTN---SGLGSFKPPRSLKLLDLHG 492
            + +   +    + LG  +   SL  LDL+ 
Sbjct: 520 KLSNNSFSGNIPAELGDCR---SLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 3e-14
 Identities = 89/415 (21%), Positives = 148/415 (35%), Gaps = 88/415 (21%)

Query: 112 TGMTC----LKELDLSRCVKVTDAGM--KHLLSISTLEKLWLSETGLTADGIALLSSLQN 165
            G+TC    +  +DLS              LLS++ LE L+LS + +    ++      +
Sbjct: 43  DGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSAS 101

Query: 166 LSVLDL------GGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAA-VLKMFPRLSFLN 218
           L+ LDL      G +      L SL   + L++L++  + +   G          L  L+
Sbjct: 102 LTSLDLSRNSLSGPVTT----LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

Query: 219 LAW--------TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 270
           L+          G         L+ L +S       + G+        + ++        
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNK----ISGD--------VDVSRCVN---- 201

Query: 271 EAFLYIETSLLSFLDVSNSSLS-RFCFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANL 328
                     L FLDVS+++ S    FL    AL+HLD+S + + GD S  +  C    L
Sbjct: 202 ----------LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT--EL 249

Query: 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI--SYMSMMPSLKFIDISNTD 386
           + LN+S+ +F      I    L +L+ LSL+  +     I         +L  +D+S   
Sbjct: 250 KLLNISSNQFVGP---IPPLPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNH 305

Query: 387 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLR 443
             G +                 + + LE L L     S     P+ T    + L  L L 
Sbjct: 306 FYGAVP------------PFFGSCSLLESLALSSNNFSGE--LPMDTLLKMRGLKVLDLS 351

Query: 444 NASLTDV---SLHQLSSLSKLTNLSIRDAVLT---NSGLGSFKPPRSLKLLDLHG 492
               +     SL  LS  + L  L +     +      L    P  +L+ L L  
Sbjct: 352 FNEFSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQN 403

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 29/270 (10%)

Query: 138 SISTLEKLWLSETGLTADGI--ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195
            + TLE L L    LT  G   + LS+  NL+ + L    +T  + + +  L  L  L L
Sbjct: 464 YVKTLETLILDFNDLT--GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 196 WGSQVSNR--GA--AVLKMFPRLSFLNLAW---TGVTKLPN-ISSLECLNLSNCTIDSIL 247
                +N   G   A L     L +L+L      G   +P  +        +N       
Sbjct: 522 S----NNSFSGNIPAELGDCRSLIWLDLNTNLFNG--TIPAAMFKQSGKIAANFIAGKRY 575

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIET-SLLSFLDVSNSSLSRF--CFLTQMKALE 304
              +N     +   AG     +      +   S  +  ++++               ++ 
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 305 HLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA--GHLPNLEILSLSGT 361
            LD+S   + G    E+ +     L  LNL +   S     I    G L  L IL LS  
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPY--LFILNLGHNDISG---SIPDEVGDLRGLNILDLSSN 690

Query: 362 QIDDYAISYMSMMPSLKFIDISNTDIKGFI 391
           ++D      MS +  L  ID+SN ++ G I
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 60/297 (20%), Positives = 103/297 (34%), Gaps = 43/297 (14%)

Query: 90  RYLRSLNVADCRRVTSSALWAL-----TGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLE 143
             LR LN+A  R +T      +     +G   L E++L+ C ++  AG++ LL       
Sbjct: 72  SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRAR 129

Query: 144 KLWLSETGLTADGI-----ALLSSLQNLSVLDLGGLPVTD----LVLRSLQVLTKLEYLD 194
           KL L    L  +        LL     ++ L L   P+T     +++  L   T + +L 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 195 LWGSQVSNRG----AAVLKMFPRLSFLNLAWTGVTK---------LPNISSLECLNLSNC 241
           L  + + + G    AA L    +L  LN+A+ G                 SLE L+L   
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249

Query: 242 TID-----SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF 296
            +       + +        A++ ++ T      E +      +LS +  + +S  R   
Sbjct: 250 ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWS----VILSEVQRNLNSWDRA-R 304

Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVAC---VGANLRNLNLSNTRFSSAGVGILAGHL 350
           + +   L   DL  S     +    A    V   +R L        S          
Sbjct: 305 VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQF 361

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 55/374 (14%), Positives = 107/374 (28%), Gaps = 86/374 (22%)

Query: 118 KELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGI-----ALLSSLQNLSVLDLG 172
           + LD                 +S+L +L L+   +T          L S    L  ++L 
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA 109

Query: 173 GLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS 231
              +    LR+L  V  +   L L  + +       L        L           +  
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL-----RDLLLH---------DQC 155

Query: 232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 291
            +  L LSN  +          A L +                                 
Sbjct: 156 QITTLRLSNNPL-----TAAGVAVLMEG-------------------------------- 178

Query: 292 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSNTRFSSAGVGILAG 348
                L    ++ HL L  + +GD+ +E++A        L+ LN++           LA 
Sbjct: 179 -----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233

Query: 349 HL---PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405
                P+LE+L L   ++       +  +                   V     ++LS  
Sbjct: 234 AAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILS-E 292

Query: 406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK----L 461
             +NLN  +R  +++               EL+   L ++    ++  + + L +    +
Sbjct: 293 VQRNLNSWDRARVQRH-------------LELLLRDLEDSRGATLNPWRKAQLLRVEGEV 339

Query: 462 TNLSIRDAVLTNSG 475
             L  +     +  
Sbjct: 340 RALLEQLGSSGSPS 353

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 38/273 (13%), Positives = 83/273 (30%), Gaps = 30/273 (10%)

Query: 227 LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTF-INEREAFLYIETSL---- 280
              I +L+ L  +      + + G +   P   +      +    +     + +SL    
Sbjct: 19  GCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLN 78

Query: 281 LSFLDVSNSSLSRFCFLTQM--KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
           L+ + ++    +    +      AL+ ++L+S  +    +  +  V    R L L     
Sbjct: 79  LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL 138

Query: 339 SSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMM----PSLKFIDISNTDIKGF 390
                  L   L      +  L LS   +    ++ +        S+  + + +T +   
Sbjct: 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD- 197

Query: 391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF----KELIHLSLRNAS 446
               G E   +L+   L     L+ LN+      D     L+        L  L L    
Sbjct: 198 ---EGLE---LLA-AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 447 LTDVSLHQLSSLSKL--TNLSIRDAVLTNSGLG 477
           L+      L  L         +  ++   + + 
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 90  RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS----TLEKL 145
             +++++  D   + S     + G+  ++++ L +C  + D  ++ L  +     ++ ++
Sbjct: 61  YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEM 119

Query: 146 WLSE-TGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLTKLEYLDL 195
            +     +T  GI  L   +NL  L L  LP V +         T L  L+L
Sbjct: 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 58  SLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTC- 116
               + K+  +AI+    + + +    ++   +Y+  + +  C  +    L  L+ +   
Sbjct: 54  PTGPLDKYKIQAIDATD-SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112

Query: 117 ---LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE-TGLTADGIALLSSLQNLSVLDL 171
              + E+++  C  VTD G+  L     L+ L+LS+  G+      + +   +L  L+L
Sbjct: 113 QKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
           GA +R       +     +         ++ +  + + I      +M  +  ++ I +  
Sbjct: 35  GAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCK 94

Query: 385 TDIKGFIQQVGAETDLVLS-LTALQNLNH-LERLNLEQ-TQVSDATLFPLSTFKELIHLS 441
                    +    D  L  L+ L+NL   +  + +     V+D  +  L  F+ L +L 
Sbjct: 95  CH------YI---EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLF 145

Query: 442 LRNAS-LTDVSLHQLSSLSKLTNLSIR 467
           L +   + +      +  + L +L ++
Sbjct: 146 LSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFK 435
           ++ ID +++ I                   ++ L ++E++ L +   + D  L  LS  +
Sbjct: 63  IQAIDATDSCIMSIGFDH------------MEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 436 E----LIHLSLRN-ASLTDVSLHQLSSLSKLTNLSIRD-AVLTNSGLGSFKPPRSLKLLD 489
                ++ + + +  ++TD  +  L     L  L + D   +            SL  L+
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170

Query: 490 LH 491
           L 
Sbjct: 171 LK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 413 LERLNLEQTQVSDATLFPLSTFKELIHLSLRN-ASLTDVSLHQLSSLSK----LTNLSIR 467
           ++ ++   + +       +   + +  + L     + D  L +LS L      +  + I 
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122

Query: 468 DAV-LTNSGLGSFKPPRSLKLLDLHGGWLLT--EDAILQFCKMHPRIEV 513
               +T+ G+ +    R+LK L L     +   E  +  F    P +E+
Sbjct: 123 SCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG-SQVSNRGAAVLKMFP----RLSFLNL 219
            +  +D     +  +    ++ L  +E + L     + +     L         +  + +
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 220 AW------TGVTKLPNISSLECLNLSNCT 242
                    G+  L +  +L+ L LS+  
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLP 150

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 49/408 (12%), Positives = 125/408 (30%), Gaps = 65/408 (15%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC----VKVTDAGMKHLLSIST 141
               + L  + V +C  +T    + L  +  ++ ++++       +      + L     
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 142 ---LEKLWLSETGLTADGI-ALLSSLQNLSVLDLG-----GLPVTDLVLRSLQVLTKLEY 192
              ++ +++    L    +   L  ++ L +L+       G         +     KL  
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL------PAFGSEIKLAS 357

Query: 193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSI 246
           L+L  +Q++   A       ++  L+ A   +  +P      ++S +  ++ S   I S+
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 247 LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE 304
              N +                            +S +++SN+ +S+F     +    L 
Sbjct: 418 DGKNFDPLDPTPFKG-----------------INVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 305 HLDLSSSMIGDDSVEMVACVGA------NLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 358
            ++L  +M+ +     +            L +++L   + +       A  LP L  + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 359 SGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL-TALQNLNHLERL 416
           S          +      +LK   I N       + +             +     L +L
Sbjct: 521 SYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLR-------EWPEGITLCPSLTQL 571

Query: 417 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 464
            +    +             +  L +++     + L  +    +    
Sbjct: 572 QIGSNDIRK---VNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.8 bits (166), Expect = 6e-12
 Identities = 47/400 (11%), Positives = 115/400 (28%), Gaps = 53/400 (13%)

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG----LPVTDLVLRSLQVLTKLE 191
           L S   +  L L   G +      +  L  L VL LG     +       + +      E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 192 YLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE 251
                           +   PR  F +L    +   P   S++  +      D+ +    
Sbjct: 137 QKQKMRMHYQK---TFVDYDPREDFSDLIKDCINSDPQQKSIK-KSSRITLKDTQIGQLS 192

Query: 252 NKAP-----------LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM 300
           N              L +  +  + F+ E     +   +           L        +
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK----WDNL 248

Query: 301 KALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH-------LPN 352
           K L  +++ +   +      + A     ++ +N++  R  S                   
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALP--EMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 353 LEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDL-VLSL------ 404
           ++I+ +    +  + + + +  M  L  ++     ++G +   G+E  L  L+L      
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366

Query: 405 ----TALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRNASLTDVSLHQLSS-- 457
                       +E L+    ++     +F   +   +  +      +  V         
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 458 -----LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
                   ++++++ +  ++      F     L  ++L G
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 45/342 (13%), Positives = 104/342 (30%), Gaps = 66/342 (19%)

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD-LGGLPVTDLVLRSLQVLTKLEYLD 194
           ++ ++ L + ++  +   A+ I      +N           +          L  L  ++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL------KWDNLKDLTDVE 255

Query: 195 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGN 250
           ++                            TKLP     +  ++ +N++     S  +  
Sbjct: 256 VYNCPNL-----------------------TKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLD 307
           ++   LA   +                   +  + +  ++L  F     L +MK L  L+
Sbjct: 293 DDWQALADAPVG----------------EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE 336

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
              + +        + +   L +LNL+  + +        G    +E LS +  ++    
Sbjct: 337 CLYNQLEGKLPAFGSEI--KLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIP 393

Query: 368 ISY-MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 426
             +    +  +  ID S  +I           +            ++  +NL   Q+S  
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVD-----GKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 427 TLFPLSTFKELIHLSLRNASLTDVSLHQLS----SLSKLTNL 464
                ST   L  ++L    LT++  + L     +      L
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 59/345 (17%), Positives = 116/345 (33%), Gaps = 55/345 (15%)

Query: 159 LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
           +  +     +  +    +   +    Q    ++ LDL G+ +S   AA L  F +L  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 219 LAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLY 275
           L+   + +  ++   S+L  L+L+N  +  +L G                          
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS------------------------ 100

Query: 276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
                +  L  +N+++SR       +  +++ L+++ I         C  + ++ L+L  
Sbjct: 101 -----IETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKL 153

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN---TDIKGFIQ 392
               +     LA     LE L+L    I D  +    +   LK +D+S+     +    Q
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211

Query: 393 QVGAETDLVLS---LT----ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 445
                T + L    L     AL+   +LE  +L        T         L     +N 
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT---------LRDFFSKNQ 262

Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 490
            +  V+   +  L+           L + G    +   +     L
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 61/327 (18%), Positives = 117/327 (35%), Gaps = 24/327 (7%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
            + +  +   ++++ L     +L  S  N+  LDL G P++ +    L   TKLE L+L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSI-LEGNENKAP 255
            + +       L+    L  L+L    V +L    S+E L+ +N  I  +     +    
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG--- 121

Query: 256 LAKISLAG---TTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLS 309
              I LA    T   +  E       S + +LD+      +++          LEHL+L 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCR----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 369
            + I    V+      A L+ L+LS+ + +  G          +  +SL   ++     +
Sbjct: 178 YNFI--YDVKGQVVF-AKLKTLDLSSNKLAFMGPEF--QSAAGVTWISLRNNKLVLIEKA 232

Query: 370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 429
            +    +L+  D+          +     +  +   A Q +  L   N E+  V     +
Sbjct: 233 -LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 430 PLSTFKELIHLSLRNASLTDVSLHQLS 456
                ++L         L  +  H   
Sbjct: 292 GAYCCEDLPAPFADR--LIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 44/267 (16%), Positives = 104/267 (38%), Gaps = 29/267 (10%)

Query: 228 PNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGTTFINEREAFLYIETSLLSFLDV 286
            N +  +   +++ ++   L      A  + ++ L+G   +++  A      + L  L++
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNL 65

Query: 287 SNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 346
           S++ L     L  +  L  LDL+++ + +  V      G ++  L+ +N   S     + 
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYVQELLV------GPSIETLHAANNNISR----VS 115

Query: 347 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 406
                  + + L+  +I             ++++D+   +I             V     
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----------VNFAEL 164

Query: 407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 466
             + + LE LNL+   +    +     F +L  L L +  L  +   +  S + +T +S+
Sbjct: 165 AASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISL 221

Query: 467 RDAVLTNSGL-GSFKPPRSLKLLDLHG 492
           R+  L    +  + +  ++L+  DL G
Sbjct: 222 RNNKLVL--IEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 53/278 (19%), Positives = 87/278 (31%), Gaps = 44/278 (15%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
            +   V D   +  +          +KELDLS    ++      L   + LE L LS   
Sbjct: 12  YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV 69

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF 211
           L       L SL  L  LDL         ++ L V   +E L    + +S    +     
Sbjct: 70  LY--ETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCS---RG 119

Query: 212 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
                + LA   +T L        S ++ L+L    ID++                    
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------------------- 159

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326
                       + L  L++  + +           L+ LDLSS+ +     E  +   A
Sbjct: 160 --NFAELAASSDT-LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA--A 214

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
            +  ++L N +       +      NLE   L G    
Sbjct: 215 GVTWISLRNNKLVLIEKAL--RFSQNLEHFDLRGNGFH 250

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 31/223 (13%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
            + L++ +    SL    F  ++  L  L LSS+ +        +  G  +L+ L+LS  
Sbjct: 30  ATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM---MPSLKFIDISNTDIKGFIQQ 393
              +     L   L  LE L    + +    +S  S+   + +L ++DIS+T  +     
Sbjct: 89  GVITMSSNFL--GLEQLEHLDFQHSNLK--QMSEFSVFLSLRNLIYLDISHTHTR----- 139

Query: 394 VGAETDLVLSLTALQNLNHLERLNLE----QTQVSDATLFPLSTFKELIHLSLRNASLTD 449
                  V        L+ LE L +     Q          L     L  L L    L  
Sbjct: 140 -------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---NLTFLDLSQCQLEQ 189

Query: 450 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           +S    +SLS L  L++      +     +K   SL++LD   
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 23/241 (9%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTKLEYLDLWG 197
           S+  +L L    L +    +   L  L+ L L    L       +S    T L+YLDL  
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS------SLECLNLSNCTIDSI----L 247
           + V    +  L    +L  L+   + + ++   S      +L  L++S+           
Sbjct: 88  NGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALE 304
            G  +   L  + +AG +F       ++ E   L+FLD+S      LS   F   + +L+
Sbjct: 147 NGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQ 202

Query: 305 HLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
            L++S +     S++        +L+ L+ S     ++    L     +L  L+L+    
Sbjct: 203 VLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

Query: 364 D 364
            
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 59/274 (21%)

Query: 211 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT 265
               + L L    +  LP      ++ L  L+LS+  +                     +
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK-------------GCCSQS 73

Query: 266 FINEREAFLYIETSLLSFLDVSNSSLSR----FCFLTQMKALEHLDLSSSMIGDDSVEMV 321
                       T+ L +LD+S + +      F  L Q   LEHLD   S +     + +
Sbjct: 74  DFG---------TTSLKYLDLSFNGVITMSSNFLGLEQ---LEHLDFQHSNL-----KQM 116

Query: 322 ACVGA-----NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM-SMMP 375
           +         NL  L++S+T    A  GI  G L +LE+L ++G    +  +  + + + 
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 435
           +L F+D+S   ++             LS TA  +L+ L+ LN+          FP     
Sbjct: 176 NLTFLDLSQCQLE------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 436 ELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRD 468
            L  L      +      +L    S L  L++  
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 41/239 (17%), Positives = 82/239 (34%), Gaps = 41/239 (17%)

Query: 110 ALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSE---TGLTADGIALLSSLQN 165
               +T L +L LS   +       +     ++L+ L LS      ++++       L+ 
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQ 102

Query: 166 LSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA-WTG 223
           L  LD     +  +   S+   L  L YLD+  +        +      L  L +A  + 
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 224 VTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
                      + +L  L+LS C ++ +                   F +          
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPT---------------AFNS---------L 198

Query: 279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
           S L  L++S+++           + +L+ LD S + I     + +    ++L  LNL+ 
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 10/157 (6%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTLEKLWLSE- 149
           L  L+         S       +  L  LD+S    +V   G+     +S+LE L ++  
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGN 160

Query: 150 TGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK 209
           +        + + L+NL+ LDL    +  L   +   L+ L+ L++  +   +      K
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 210 MFPRLSFLNLAWTGVTKLPN------ISSLECLNLSN 240
               L  L+ +   +            SSL  LNL+ 
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 78/341 (22%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
           + ++LDL    +T++     + L  L  L L  +++S           +L  L L+   +
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 225 TKLPNI--SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 282
            +LP     +L+ L +    I  + +                                  
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSV-------------------------------- 140

Query: 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSA 341
                            +  +  ++L ++ +    +E  A  G   L  + +++T  ++ 
Sbjct: 141 --------------FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185

Query: 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 401
              I  G  P+L  L L G +I     + +  + +L  + +S   I              
Sbjct: 186 ---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA------------ 230

Query: 402 LSLTALQNLNHLERLNLEQTQVS--DATLFPLSTFKELIHLSLRNASLTDVS------LH 453
           +   +L N  HL  L+L   ++      L      K +  + L N +++ +         
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADH---KYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 454 QLSSLSKLTNLSIRDAVLTNSGL--GSFKPPRSLKLLDLHG 492
             +  +  + +S+    +    +   +F+       + L  
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 49/288 (17%), Positives = 96/288 (33%), Gaps = 43/288 (14%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
               +  L  L L    K++         +  LE+L+LS+  L      +  +LQ    L
Sbjct: 71  DFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE---L 126

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG--AAVLKMFPRLSFLNLAWTGVTKL 227
            +    +T +       L ++  ++L  + + + G      +   +LS++ +A T +T +
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186

Query: 228 PNI--SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285
           P     SL  L+L    I  +             SL G                 L+ L 
Sbjct: 187 PQGLPPSLTELHLDGNKITKVDAA----------SLKGLN--------------NLAKLG 222

Query: 286 VSNSSLSRFCF--LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           +S +S+S      L     L  L L+++ +    V         ++ + L N   S+ G 
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 344 GILAG-----HLPNLEILSLSGTQIDDYAIS--YMSMMPSLKFIDISN 384
                        +   +SL    +  + I       +     + + N
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 38/261 (14%), Positives = 74/261 (28%), Gaps = 79/261 (30%)

Query: 87  GAFRYLRSLNVADCR--RVTSSAL--WALTGMTCLKELDLSRCVKVTDAGMKHLLSI--- 139
             F  L  + V +     + SS +   A  GM  L  + ++           ++ +I   
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT---------NITTIPQG 189

Query: 140 --STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 197
              +L +L L    +T    A L  L NL+ L L    ++ +   SL     L  L L  
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           ++        L   P              L +   ++ + L N           N     
Sbjct: 250 NK--------LVKVPGG------------LADHKYIQVVYLHN-----------NN---- 274

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
                             I         + ++      + T+  +   + L S+ +    
Sbjct: 275 ------------------ISA-------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 318 VEMVACVG-ANLRNLNLSNTR 337
           ++            + L N +
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 45/339 (13%), Positives = 105/339 (30%), Gaps = 79/339 (23%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
           + ++LDL    +++L     + L  L  L L  +++S           +L  L ++   +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 225 TKLPNI--SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 282
            ++P    SSL  L + +  I  + +G                                 
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGV-------------------------------- 142

Query: 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
                          + ++ +  +++  + + +   E  A  G  L  L +S  + +   
Sbjct: 143 --------------FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-- 186

Query: 343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 402
             I       L  L L   +I    +  +     L  + + +  I+            ++
Sbjct: 187 --IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR------------MI 232

Query: 403 SLTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVS------LH 453
              +L  L  L  L+L+    ++V       L   K L  + L   ++T V       + 
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPAG----LPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 454 QLSSLSKLTNLSIRDAVLTNSGL--GSFKPPRSLKLLDL 490
                +    +S+ +  +    +   +F+       +  
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 25/216 (11%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
            + LD+ N   S L +  F   ++ L  L L ++ I    +   A      L+ L +S  
Sbjct: 56  TTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKN 112

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGA 396
                   I      +L  L +   +I        S + ++  I++    +         
Sbjct: 113 HLVE----IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL--------- 159

Query: 397 ETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 456
             +      A   L  L  L + + +++     P    + L  L L +  +  + L  L 
Sbjct: 160 -ENSGFEPGAFDGLK-LNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQAIELEDLL 214

Query: 457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
             SKL  L +    +     GS     +L+ L L  
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 46/289 (15%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
              G+  L  L L    K++    K    +  L+KL++S+  L      L SSL     L
Sbjct: 73  DFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE---L 128

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKL 227
            +    +  +       L  +  +++ G+ + N G      F   +L++L ++   +T +
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGLKLNYLRISEAKLTGI 187

Query: 228 PNI--SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 285
           P     +L  L+L +  I +I                      E E  L    S L  L 
Sbjct: 188 PKDLPETLNELHLDHNKIQAI----------------------ELEDLL--RYSKLYRLG 223

Query: 286 VSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
           + +     +      + +  L  L L ++ +    V         L+ + L     +  G
Sbjct: 224 LGHNQIRMIENGSL-SFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 343 VGILAG-----HLPNLEILSLSGTQIDDYAISYM--SMMPSLKFIDISN 384
           V                 +SL    +  + +       +     I   N
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 36/192 (18%), Positives = 63/192 (32%), Gaps = 23/192 (11%)

Query: 87  GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLS----RCVKVTDAGMKHLLSISTL 142
                L  L + D R +        +G+  +  +++                 L     L
Sbjct: 120 NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL----KL 174

Query: 143 EKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN 202
             L +SE  LT     L  +L  L    L    +  + L  L   +KL  L L  +Q+  
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNEL---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 203 RGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSI-------LEGNE 251
                L   P L  L+L    ++++P    ++  L+ + L    I  +       +    
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 252 NKAPLAKISLAG 263
            +A    ISL  
Sbjct: 292 KRAYYNGISLFN 303

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 68/373 (18%), Positives = 115/373 (30%), Gaps = 42/373 (11%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGS 198
           + +  + LS   +        S LQ+L  L +    P   +   + + L+ L  L L  +
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKL-------PNISSLECLNLSNCTIDSILEGN- 250
           Q              L  L L    +            ++SLE L L +  I  I   + 
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 251 -ENKAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 308
             N      + L      +   E  L  +    + L +S+           ++ +    L
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS---------ITLQDMNEYWL 200

Query: 309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368
                G            ++  L+LS   F  +        +   +I SL  +   +   
Sbjct: 201 GWEKCG------NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDL------VLSLTALQNLNHLERLNLEQTQ 422
           S         F D  N   KG         DL       L  +   +   LE+L L Q +
Sbjct: 255 S----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 423 VSDATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 479
           ++       + F     L+ L+L    L  +      +L KL  L +    +   G  SF
Sbjct: 311 INK---IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367

Query: 480 KPPRSLKLLDLHG 492
               +LK L L  
Sbjct: 368 LGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 67/386 (17%), Positives = 127/386 (32%), Gaps = 65/386 (16%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           + + +  L+ L + +              +S+L  L L             + L NL VL
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 170 DLGG--LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL 227
            L    L    L     + LT LE L L  + +        K+ P   FLN+        
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-------KIQPASFFLNM-------- 153

Query: 228 PNISSLECLNLSNCTIDSILEG---NENKAPLAKISLAGTTF-------INEREAFLYIE 277
                   L+L+   + SI E    N        + L+  T        +   +     +
Sbjct: 154 ---RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 278 TSLLSFLDVSNSSLS-----RFCFLTQMKALEHLDLSSSMIGDDSV------EMVACV-- 324
            + ++ LD+S +        RF        ++ L LS+S     S       +       
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 325 ---GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 381
               + ++  +LS ++  +    + + H  +LE L+L+  +I+    +    +  L  ++
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329

Query: 382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK---ELI 438
           +S   +              +     +NL+ LE L+L    +         +F     L 
Sbjct: 330 LSQNFLGS------------IDSRMFENLDKLEVLDLSYNHIRA---LGDQSFLGLPNLK 374

Query: 439 HLSLRNASLTDVSLHQLSSLSKLTNL 464
            L+L    L  V       L+ L  +
Sbjct: 375 ELALDTNQLKSVPDGIFDRLTSLQKI 400

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 62/353 (17%), Positives = 110/353 (31%), Gaps = 64/353 (18%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           L+ L V               G++ L  L L    +           ++ LE L L++  
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCN 114

Query: 152 LTADGI--ALLSSLQNLSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRGAAVL 208
           L    +       L +L +L L    +  +   S    + +   LDL  ++V +     L
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 209 KMFP--RLSFLNLAWTGVTKLPNI-------------SSLECLNLSNCTIDSILEG---- 249
             F     + L L+   +  +                +S+  L+LS       +      
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 250 ----------NENKAPLAKISLAGTTFINERE-AFLYIETSLLSFLDVSNSSLSR----- 293
                       + +     S   T F +     F  +E S +   D+S S +       
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294

Query: 294 FCFLTQMK---------------------ALEHLDLSSSMIGDDSVEMVACVG-ANLRNL 331
           F   T ++                      L  L+LS + +G  S++         L  L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--SIDSRMFENLDKLEVL 352

Query: 332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
           +LS     + G     G LPNL+ L+L   Q+          + SL+ I +  
Sbjct: 353 DLSYNHIRALGDQSFLG-LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 21/184 (11%)

Query: 87  GAFRYLRSLNVAD-----CRRVTSSALWALTGMTCLKELDLSR-----------CVKVTD 130
           G      S+   D      +   +   +     T ++ L LS              K  D
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 131 AGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL 190
                 L  S ++   LS++ + A   ++ S   +L  L L    +  +   +   LT L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDS 245
             L+L  + + +  + + +   +L  L+L++  +  L       + +L+ L L    + S
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 246 ILEG 249
           + +G
Sbjct: 386 VPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 38/293 (12%), Positives = 81/293 (27%), Gaps = 28/293 (9%)

Query: 223 GVTKLPNI-SSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSL 280
           G+ ++P + + +  ++LS  +I  + E +      L  + +   T         +   S 
Sbjct: 21  GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 281 LSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLS 334
           L  L +  +   +     F  L     LE L L+   +    +         +L  L L 
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLAN---LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQV 394
           +             ++    +L L+  ++       +       F  +  + I   +Q +
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT--LQDM 195

Query: 395 GAETDLVLSLTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVS 451
                             +  L+L      +      F      ++  L L N+     S
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 452 LH--QLSSLSKLTNLSIRDAVLTNSGL----------GSFKPPRSLKLLDLHG 492
                       T   +  + +    L            F     L+ L L  
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 49/271 (18%), Positives = 97/271 (35%), Gaps = 56/271 (20%)

Query: 210 MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT 264
           +      LNL    +  +      ++  LE L LS   I +I  G               
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG--------------- 106

Query: 265 TFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS---SMIGDDSV 318
            F            + L+ L++ +   +++    F   +  L+ L L +     I   + 
Sbjct: 107 AFNG---------LANLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPIESIPSYAF 156

Query: 319 EMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL 377
             +     +LR L+L    R S    G   G L NL  L+L+   + +  I  ++ +  L
Sbjct: 157 NRIP----SLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLRE--IPNLTPLIKL 209

Query: 378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 437
             +D+S   +              +   + Q L HL++L + Q+Q+           + L
Sbjct: 210 DELDLSGNHLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 438 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468
           + ++L + +LT +     + L  L  + +  
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 19/227 (8%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
              L++       +    F   ++ LE L LS + I   ++E+ A  G ANL  L L + 
Sbjct: 66  TRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELFDN 122

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN----TDI-KGFI 391
           R ++   G     L  L+ L L    I+       + +PSL+ +D+      + I +G  
Sbjct: 123 RLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 392 QQVGAETDLVLS------LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 445
           + +     L L+      +  L  L  L+ L+L    +S            L  L +  +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
            +  +  +   +L  L  +++    LT      F P   L+ + LH 
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 49/255 (19%), Positives = 80/255 (31%), Gaps = 53/255 (20%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
           +   +  L+ L LSR   +    +     ++ L  L L +  LT         L  L  L
Sbjct: 83  SFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            L   P+  +   +   +  L  LDL       R    L      +F  L          
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGE---LKR----LSYISEGAFEGL---------- 184

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN- 288
            S+L  LNL+ C +  I                                  L  LD+S  
Sbjct: 185 -SNLRYLNLAMCNLREI-----------------PNLTP---------LIKLDELDLSGN 217

Query: 289 --SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGI 345
             S++    F   +  L+ L +  S I    +E  A     +L  +NL++   +     +
Sbjct: 218 HLSAIRPGSF-QGLMHLQKLWMIQSQI--QVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 346 LAGHLPNLEILSLSG 360
               L +LE + L  
Sbjct: 275 FT-PLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 51/251 (20%), Positives = 97/251 (38%), Gaps = 32/251 (12%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
           +    L L E  +    +     L++L +L L    +  + + +   L  L  L+L+   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF--- 120

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-LAK 258
             NR    L   P  +F+ L           S L+ L L N  I+SI     N+ P L +
Sbjct: 121 -DNR----LTTIPNGAFVYL-----------SKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 259 ISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS---SMI 313
           + L     ++     AF  +    L +L+++  +L     LT +  L+ LDLS    S I
Sbjct: 165 LDLGELKRLSYISEGAFEGLSN--LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
              S + +     +L+ L +  ++            L +L  ++L+   +        + 
Sbjct: 223 RPGSFQGL----MHLQKLWMIQSQIQVIERNAFDN-LQSLVEINLAHNNLTLLPHDLFTP 277

Query: 374 MPSLKFIDISN 384
           +  L+ I + +
Sbjct: 278 LHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 9/161 (5%)

Query: 87  GAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK 144
           GAF YL  L     R   + S   +A   +  L+ LDL    +++         +S L  
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRG 204
           L L+   L    I  L+ L  L  LDL G  ++ +   S Q L  L+ L +  SQ+    
Sbjct: 190 LNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 205 AAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSN 240
                    L  +NLA   +T LP      +  LE ++L +
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 60/371 (16%), Positives = 123/371 (33%), Gaps = 28/371 (7%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
                L +S+  ++    + + SL  L +L +    +  L +   +   +LEYLDL  ++
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEG---N 250
           +             L  L+L++     LP      N+S L+ L LS   ++        +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDL 308
            N + +  +         + E      T  L  +  +N          +  +  LE  ++
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 309 SSSMIGDDSVEMV-----ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 363
              +  +     +           L NL L+N   +      +   + +  +   S + +
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 364 DDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 422
                  +      +  D S T +K   I QV ++          +  +++   N   + 
Sbjct: 258 K------LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 423 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN--SGLGSFK 480
                +   S     +HL   N  LTD        L++L  L ++   L           
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 481 PPRSLKLLDLH 491
             +SL+ LD+ 
Sbjct: 372 QMKSLQQLDIS 382

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 65/398 (16%), Positives = 133/398 (33%), Gaps = 69/398 (17%)

Query: 110 ALTGMTCLKELDLSRC-VKVTDAGMKHLLSISTL------------EKLWLSETGLTADG 156
               M+ LK L LS   ++ +       L+IS +            +   L +    +  
Sbjct: 110 EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF 216
           I   ++ +   +LD+    V +L L +++ + +      + S ++            L+ 
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 217 LNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 273
           +   W    ++  +   +++   ++SN  +   L+  +                     F
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD---------------------F 268

Query: 274 LYIETSL--LSFLDVSNSSLS-----RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG- 325
            Y  TSL  LS   V +          +   + M  +++  +S +      V M+     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN-IKNFTVSGT----RMVHMLCPSKI 323

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID--DYAISYMSMMPSLKFIDIS 383
           +   +L+ SN   +        GHL  LE L L   Q+          + M SL+ +DIS
Sbjct: 324 SPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382

Query: 384 NTDIK-----GFIQQVGAETDLVLSLTALQNL------NHLERLNLEQTQVSDATLFPLS 432
              +      G      +   L +S   L +         ++ L+L   ++      P  
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS---IPKQ 439

Query: 433 TFK--ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 468
             K   L  L++ +  L  V       L+ L  + +  
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 37/278 (13%)

Query: 94  SLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHL----LSISTLEKLWLSE 149
           +LN  +    +   +  L   T +    +S          +       S+  L    +  
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 150 TGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK 209
                    +     N+++ +        + +     ++   +LD   + +++       
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 210 MFPRLSFLNLAWTGVTKLPNIS-------SLECLNLSNCTIDSILEGNENKAPLAKISLA 262
               L  L L    + +L  I+       SL+ L++S  ++    +  +     +     
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS----- 400

Query: 263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA 322
                             L  L++S++ L+   F      ++ LDL S+ I   S+    
Sbjct: 401 ------------------LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI--KSIPKQV 440

Query: 323 CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
                L+ LN+++ +  S   GI    L +L+ + L  
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDR-LTSLQKIWLHT 477

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 57/364 (15%), Positives = 122/364 (33%), Gaps = 73/364 (20%)

Query: 137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
                  +L L+  GL++    L     +L  L      +T+L     Q L  L   +  
Sbjct: 68  CLDRQAHELELNNLGLSS----LPELPPHLESLVASCNSLTELP-ELPQSLKSLLVDNNN 122

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENK 253
              +S+       + P L +L ++   + KLP +   S L+ +++ N ++  + +   + 
Sbjct: 123 LKALSD-------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS- 174

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMI 313
                                      L F+   N+ L     L  +  L  +   ++ +
Sbjct: 175 ---------------------------LEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207

Query: 314 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 373
                  +     +L ++   N       +  L  +LP L  +      +     +   +
Sbjct: 208 KKLPDLPL-----SLESIVAGNNILEE--LPEL-QNLPFLTTIYADNNLL----KTLPDL 255

Query: 374 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL----NHLERLNLEQTQVSDATLF 429
            PSL+ +++ +  +    +   + T L +S      L     +L  LN    ++      
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315

Query: 430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP-PRSLKLL 488
           P S    L  L++ N  L ++     +   +L  L       + + L      P++LK L
Sbjct: 316 PPS----LEELNVSNNKLIELP----ALPPRLERLI-----ASFNHLAEVPELPQNLKQL 362

Query: 489 DLHG 492
            +  
Sbjct: 363 HVEY 366

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 62/400 (15%), Positives = 135/400 (33%), Gaps = 91/400 (22%)

Query: 117 LKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGL 174
             EL+L+        G+  L      LE L  S   LT   +  L  SL++L V +    
Sbjct: 73  AHELELNNL------GLSSLPELPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLK 124

Query: 175 PVTDL--VLRSLQV-------------LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
            ++DL  +L  L V              + L+ +D+  + +      +  + P L F+  
Sbjct: 125 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK----LPDLPPSLEFIAA 180

Query: 220 AWTGVTKLPNI---SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYI 276
               + +LP +     L  +   N ++  + +   +                        
Sbjct: 181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS------------------------ 216

Query: 277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 336
               L  +   N+ L     L  +  L  +   ++++     + +  +  +L  LN+ + 
Sbjct: 217 ----LESIVAGNNILEELPELQNLPFLTTIYADNNLL-----KTLPDLPPSLEALNVRDN 267

Query: 337 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGA 396
             +   +  L   L  L++     + + +         P+L +++ S+ +I+       +
Sbjct: 268 YLTD--LPELPQSLTFLDVSENIFSGLSELP-------PNLYYLNASSNEIRSLCDLPPS 318

Query: 397 ETDLVLS---LTAL-QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452
             +L +S   L  L      LERL      +++    P    + L  L +    L +   
Sbjct: 319 LEELNVSNNKLIELPALPPRLERLIASFNHLAE---VP-ELPQNLKQLHVEYNPLREFP- 373

Query: 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
                   + +L      + +      + P++LK L +  
Sbjct: 374 ---DIPESVEDLR-----MNSHLAEVPELPQNLKQLHVET 405

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 60/357 (16%), Positives = 118/357 (33%), Gaps = 69/357 (19%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSI---STLEKLWLSETGLTADGIALLSSLQNLSVLDLGG 173
           L+ L +S         ++ L  +   S L+ + +    L      L     +L  +  G 
Sbjct: 133 LEYLGVSNN------QLEKLPELQNSSFLKIIDVDNNSLKK----LPDLPPSLEFIAAGN 182

Query: 174 LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS-- 231
             + +L    LQ L  L  +    + +      +  +   L  +      + +LP +   
Sbjct: 183 NQLEEL--PELQNLPFLTAIYADNNSLKK----LPDLPLSLESIVAGNNILEELPELQNL 236

Query: 232 -SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 290
             L  +   N  + ++ +   +   L  +++      +  E         L+FLDVS + 
Sbjct: 237 PFLTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDLPELP-----QSLTFLDVSENI 288

Query: 291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL 350
            S    L     L +L+ SS+ I             +L  LN+SN +        L    
Sbjct: 289 FSGLSEL--PPNLYYLNASSNEIRSLCDLP-----PSLEELNVSNNKLIE-----LPALP 336

Query: 351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS------- 403
           P LE L  S   + +  +    +  +LK + +    ++ F     +  DL ++       
Sbjct: 337 PRLERLIASFNHLAE--VP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392

Query: 404 --LTALQNLN--------------HLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 444
                L+ L+               +E L +   +V D   F   T  +L      +
Sbjct: 393 ELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 29/220 (13%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT 336
           L  L +       +    F   + +L  L+L  + +    +   A    + LR L L N 
Sbjct: 101 LEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNN 157

Query: 337 RFSSAGVGILAGHLPNLEILSLSG----TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ 392
              S         +P+L  L L        I + A   +    +LK++++   +IK    
Sbjct: 158 PIESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGL---FNLKYLNLGMCNIK---- 209

Query: 393 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452
                      +  L  L  LE L +      +           L  L + N+ ++ +  
Sbjct: 210 ----------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           +    L+ L  L++    L++     F P R L  L LH 
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 27/257 (10%)

Query: 134 KHLLSI-----STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLT 188
           + L  +     S    L L E  +          L +L VL LG   +  + + +   L 
Sbjct: 64  RGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123

Query: 189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE 248
            L  L+L+     N     L + P  +F  L           S L  L L N  I+SI  
Sbjct: 124 SLNTLELF----DNW----LTVIPSGAFEYL-----------SKLRELWLRNNPIESIPS 164

Query: 249 GNENKAP-LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 307
              N+ P L ++ L     +       +     L +L++   ++     LT +  LE L+
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224

Query: 308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
           +S +   +        +  +L+ L + N++ S        G L +L  L+L+   +    
Sbjct: 225 MSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDG-LASLVELNLAHNNLSSLP 282

Query: 368 ISYMSMMPSLKFIDISN 384
               + +  L  + + +
Sbjct: 283 HDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 48/255 (18%), Positives = 80/255 (31%), Gaps = 53/255 (20%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
               +  L+ L L R   +    +     +++L  L L +  LT         L  L  L
Sbjct: 94  TFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            L   P+  +   +   +  L  LDL       +    L+     +F  L          
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGE---LKK----LEYISEGAFEGL---------- 195

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN- 288
             +L+ LNL  C I  +                                  L  L++S  
Sbjct: 196 -FNLKYLNLGMCNIKDM-----------------PNLTP---------LVGLEELEMSGN 228

Query: 289 --SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGI 345
               +    F   + +L+ L + +S +    +E  A  G A+L  LNL++   SS    +
Sbjct: 229 HFPEIRPGSF-HGLSSLKKLWVMNSQV--SLIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 346 LAGHLPNLEILSLSG 360
               L  L  L L  
Sbjct: 286 FT-PLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 87  GAFRY---LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
           GAF Y   LR L + +   + S   +A   +  L  LDL    K+          +  L+
Sbjct: 141 GAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR 203
            L L    +    +  L+ L  L  L++ G    ++   S   L+ L+ L +  SQVS  
Sbjct: 200 YLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 204 GAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSN 240
                     L  LNLA   ++ LP      +  L  L+L +
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 28/176 (15%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFIDIS 383
           +L  L L         VG   G L +L  L L     T I   A  Y+     L+ + + 
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNG-LASLNTLELFDNWLTVIPSGAFEYL---SKLRELWLR 155

Query: 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ----TQVSDATLFPLSTFKELIH 439
           N  I+             +   A   +  L RL+L +      +S+     L     L +
Sbjct: 156 NNPIE------------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF---NLKY 200

Query: 440 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495
           L+L   ++    +  L+ L  L  L +          GSF    SLK L +    +
Sbjct: 201 LNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 55/329 (16%), Positives = 93/329 (28%), Gaps = 70/329 (21%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
             ++ L LS   +T    + L    NL  L L    +  +   S   L  LE+LDL  + 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI 259
                   L       F  L           SSL  LNL      ++ E           
Sbjct: 112 --------LSNLSSSWFKPL-----------SSLTFLNLLGNPYKTLGET---------- 142

Query: 260 SLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 319
                       +     T L      +  + ++     Q K    L             
Sbjct: 143 ------------SLFSHLTKLQILRVGNMDTFTKI----QRKDFAGLT------------ 174

Query: 320 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 379
                   L  L +  +   S     L   + N+  L L   Q       ++ +  S++ 
Sbjct: 175 -------FLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 380 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 439
           +++ +TD+  F       T    SL       +++ +  E        L  +S    L+ 
Sbjct: 227 LELRDTDLDTF-HFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQIS---GLLE 281

Query: 440 LSLRNASLTDVSLHQLSSLSKLTNLSIRD 468
           L      L  V       L+ L  + +  
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 58/356 (16%), Positives = 109/356 (30%), Gaps = 81/356 (22%)

Query: 157 IALLSSLQNLSVLDLGGLPVTDLVLRSLQVL-----TKLEYLDLWGSQVSNRGAAVLKMF 211
                   N + L      +      SL  +       ++ LDL  ++++    + L+  
Sbjct: 16  SLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC 75

Query: 212 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTF 266
             L  L L   G+  +      ++ SLE L+LS   + ++                   F
Sbjct: 76  VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS---------------WF 120

Query: 267 INEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC 323
                       S L+FL++      +L      + +  L+ L +               
Sbjct: 121 KP---------LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV--------------- 156

Query: 324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 383
                     +   F+       AG L  LE L +  + +  Y    +  + ++  + + 
Sbjct: 157 ---------GNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL--FPLSTFKELIHL- 440
                            +L    +   + +E L L  T +               LI   
Sbjct: 207 MKQHI------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 441 SLRNASLTDVSLHQL----SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           + RN  +TD SL Q+    + +S L  L      L +   G F    SL+ + LH 
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 15/178 (8%)

Query: 87  GAFRY---LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
             F+    L  LN+      T       + +T L+ L +      T    K    ++ LE
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG------ 197
           +L +  + L +     L S+QN+S L L       L+   + V + +E L+L        
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 198 --SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEG 249
             S++S      L        + +    + ++      IS L  L  S   + S+ +G
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 13/170 (7%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 386
           NL+ L L++   ++      +  L +LE L LS   + + + S+   + SL F+++    
Sbjct: 77  NLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 387 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNA 445
            K  + +           + L  L  L   N++  T++       L+    L  L +  +
Sbjct: 136 YK-TLGETSL-------FSHLTKLQILRVGNMDTFTKIQRKDFAGLT---FLEELEIDAS 184

Query: 446 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 495
            L       L S+  +++L +                 S++ L+L    L
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 62/375 (16%), Positives = 117/375 (31%), Gaps = 38/375 (10%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
              + L LS+  ++   +  +S L  L VL L    +  L          LEYLD+  ++
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLP------NISSLECLNLSNCTIDSILEGNENK 253
           + N     +     L  L+L++     LP      N++ L  L LS      +       
Sbjct: 112 LQNISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 254 APLAKISLAGTTFI---NEREAFLYIETSLLSFLDVSNSSLS--RFCFLTQMKALEHLDL 308
             L+ I L   ++     E E+     T++L  +   NS  S      +  +  L+  ++
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 309 SSSMIGD---DSVEMVACVGANLRNLNLSNTRFSSAGV-----GILAGHLPNLEI--LSL 358
             +        +       G  L N+ L +   +               +  L I  L++
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 418
           +     +      + + SL    + N               L            +    L
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVF------------LFSKEALYSVFAEMNIKML 336

Query: 419 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 478
             +      +    +      L+      TD      S+L +L  L ++   L N    +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 479 FKPP--RSLKLLDLH 491
                  SL+ LD+ 
Sbjct: 397 LMTKNMSSLETLDVS 411

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 43/327 (13%), Positives = 100/327 (30%), Gaps = 39/327 (11%)

Query: 159 LLSSLQNLSV-LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKM-FPRLSF 216
           +       SV +++    +  L L ++++  +     +       RG  +L +    +  
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 217 LNLAWTGVTKLPNISSLECLNLSNCTIDSILEGN-----ENKAPLAKISLAGTTFINERE 271
                  + +      +E LN+ N TI   ++       E       I           +
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 272 AFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 328
             LY   + ++   +S S        C      +   L+ + ++  D   +  + +   L
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSVFQGCSTL-KRL 379

Query: 329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISN 384
           + L L      +     +A    N+  L      ++           +   S+  +++S+
Sbjct: 380 QTLILQRNGLKN--FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437

Query: 385 TDIKGFIQQVGAETDLVL-SLTALQNLNHLERLNLEQTQVSDATLFPLSTFK--ELIHLS 441
             +          T  V   L        ++ L+L   ++      P        L  L+
Sbjct: 438 NML----------TGSVFRCLPP-----KVKVLDLHNNRIMS---IPKDVTHLQALQELN 479

Query: 442 LRNASLTDVSLHQLSSLSKLTNLSIRD 468
           + +  L  V       L+ L  + + D
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 40/278 (14%), Positives = 87/278 (31%), Gaps = 53/278 (19%)

Query: 114 MTCLKELDLSRC----VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVL 169
              ++ L++           +       ++ +L    +          AL S    +++ 
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN 229
            L       + +      +   +L+   +  ++          RL  L L   G+     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 230 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 289
           +                                         A +    S L  LDVS +
Sbjct: 395 V-----------------------------------------ALMTKNMSSLETLDVSLN 413

Query: 290 SLSR--FCFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL 346
           SL+   +       +++  L+LSS+M+         C+   ++ L+L N R  S    + 
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVKVLDLHNNRIMSIPKDVT 470

Query: 347 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
             HL  L+ L+++  Q+          + SL++I + +
Sbjct: 471 --HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 27/220 (12%)

Query: 281 LSFLDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLS-N 335
              + +     S +    F    + L  L L S+++    ++  A  G A L  L+LS N
Sbjct: 34  SQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDN 90

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 395
            +  S       G L  L  L L    + +        + +L+++ + +  ++       
Sbjct: 91  AQLRSVDPATFHG-LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ------- 142

Query: 396 AETDLVLSLTALQNLNHLERLNLEQ---TQVSDATLFPLSTFKELIHLSLRNASLTDVSL 452
                 L     ++L +L  L L     + V +     L     L  L L    +  V  
Sbjct: 143 -----ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH---SLDRLLLHQNRVAHVHP 194

Query: 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
           H    L +L  L +    L+     +  P R+L+ L L+ 
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 38/231 (16%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG-S 198
           +  ++++L    ++    A   + +NL++L L    +  +   +   L  LE LDL   +
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 199 QVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNENK 253
           Q+ +   A      RL  L+L   G+ +L       +++L+ L L +  + ++ +     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD---- 147

Query: 254 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS 310
                      TF +            L+ L +     SS+    F   + +L+ L L  
Sbjct: 148 -----------TFRD---------LGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQ 186

Query: 311 SMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
           + +    V   A      L  L L     S+     LA  L  L+ L L+ 
Sbjct: 187 NRV--AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP-LRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 39/170 (22%), Positives = 66/170 (38%), Gaps = 25/170 (14%)

Query: 87  GAFRYLRSLNV---ADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS--- 140
            AF  L  L     +D  ++ S       G+  L  L L RC          L  +    
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC---------GLQELGPGL 124

Query: 141 -----TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195
                 L+ L+L +  L A        L NL+ L L G  ++ +  R+ + L  L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 196 WGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSN 240
             ++V++      +   RL  L L    ++ LP      + +L+ L L++
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 13/149 (8%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSE----TGLTADGIALLSSLQN 165
           +      L  L L     +          ++ LE+L LS+      +          L  
Sbjct: 51  SFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---TFHGLGR 106

Query: 166 LSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT 225
           L  L L    + +L     + L  L+YL L  + +        +    L+ L L    ++
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 226 KLP-----NISSLECLNLSNCTIDSILEG 249
            +P      + SL+ L L    +  +   
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 58/365 (15%), Positives = 123/365 (33%), Gaps = 54/365 (14%)

Query: 163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT 222
               +VL++G   +T L      +   +  L +      N   ++  + P L  L ++  
Sbjct: 39  NNGNAVLNVGESGLTTL---PDCLPAHITTLVIPD----NNLTSLPALPPELRTLEVSGN 91

Query: 223 GVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
            +T LP     +  L   +     + ++  G      L K+ + G    +     L +  
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQLTS-----LPVLP 140

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF 338
             L  L VS++ L+          L  L   ++ +    +       + L+ L++S+ + 
Sbjct: 141 PGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSLPMLP-----SGLQELSVSDNQL 193

Query: 339 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAET 398
           +S         L  L   +   T +        ++   LK + +S   +           
Sbjct: 194 ASLPTLP--SELYKLWAYNNRLTSLP-------ALPSGLKELIVSGNRLTSLPVLPSELK 244

Query: 399 DLVLS---LTAL-QNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTDVSL 452
           +L++S   LT+L    + L  L++ + Q++     P  L        ++L    L++ +L
Sbjct: 245 ELMVSGNRLTSLPMLPSGLLSLSVYRNQLTR---LPESLIHLSSETTVNLEGNPLSERTL 301

Query: 453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 512
             L  ++     S     +    +     PR  + L L     L      +        +
Sbjct: 302 QALREITSAPGYSGP---IIRFDMAGASAPRETRALHLAAADWLVPAREGEPA----PAD 354

Query: 513 VWHEL 517
            WH  
Sbjct: 355 RWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 54/323 (16%), Positives = 101/323 (31%), Gaps = 43/323 (13%)

Query: 115 TCLKELDLSRCVKVTDAGMKHL-LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG 173
             +  L +          +  L      L  L +S   LT+    L   L  LS+     
Sbjct: 61  AHITTLVIPDN------NLTSLPALPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPL 113

Query: 174 LPVTDLV--LRSLQV-----------LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220
             +  L   L  L +              L+ L +      N+ A++  +   L  L   
Sbjct: 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD----NQLASLPALPSELCKLWAY 169

Query: 221 WTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279
              +T LP   S L+ L++S+  + S+         L K+        N R   L    S
Sbjct: 170 NNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE---LYKLWAY-----NNRLTSLPALPS 221

Query: 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339
            L  L VS + L+    L     L+ L +S + +    +       + L +L++   + +
Sbjct: 222 GLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPMLP-----SGLLSLSVYRNQLT 274

Query: 340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD 399
                +   HL +   ++L G  + +  +  +  + S                    ET 
Sbjct: 275 RLPESL--IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332

Query: 400 LVLSLTALQNLNHLERLNLEQTQ 422
            +    A   +   E       +
Sbjct: 333 ALHLAAADWLVPAREGEPAPADR 355

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 31/161 (19%)

Query: 225 TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284
            +  N      L+L    I  I    EN                     L         +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVI----EN---------------------LGATLDQFDAI 47

Query: 285 DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGV 343
           D S++ + +      ++ L+ L ++++ I     E +     +L  L L+N        +
Sbjct: 48  DFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDL 106

Query: 344 GILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 381
             LA  L +L  L +     T    Y +  +  +P ++ +D
Sbjct: 107 DPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 18/122 (14%)

Query: 349 HLPNLEILSLSGTQIDDYAISYM-SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407
           +      L L G +I    I  + + +     ID S+ +I+               L   
Sbjct: 17  NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIR--------------KLDGF 60

Query: 408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSI 466
             L  L+ L +   ++            +L  L L N SL ++  L  L+SL  LT L I
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120

Query: 467 RD 468
             
Sbjct: 121 LR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 20/131 (15%)

Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLE 354
            T       LDL    I    +E +         ++ S+          L G   L  L+
Sbjct: 15  YTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRK-----LDGFPLLRRLK 67

Query: 355 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE 414
            L ++  +I          +P L  + ++N  +                L  L +L  L 
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-----------GDLDPLASLKSLT 116

Query: 415 RLNLEQTQVSD 425
            L + +  V++
Sbjct: 117 YLCILRNPVTN 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
           A +R L L N + +   +  L     NLE LSL    +    +S +  +P LK +++S  
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSEN 81

Query: 386 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRN 444
            I G                  + L +L  LNL   ++ D +TL PL   + L  L L N
Sbjct: 82  RIFG------------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 445 ASLTDVSLHQLSSLSKLTNLSIRD 468
             +T+++ ++ S    L  L+  D
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 29/157 (18%)

Query: 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
             +++  L L NC  +             KI      F+N            L FL + N
Sbjct: 22  TPAAVRELVLDNCKSNDG-----------KIEGLTAEFVN------------LEFLSLIN 58

Query: 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILA 347
             L     L ++  L+ L+LS + I      +   +  NL +LNLS  +    + +  L 
Sbjct: 59  VGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL-PNLTHLNLSGNKLKDISTLEPLK 117

Query: 348 GHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 381
             L  L+ L L     T ++DY  S   ++P L ++D
Sbjct: 118 -KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPV 176
           ++EL L  C                LE L L   GL +  ++ L  L  L  L+L    +
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENRI 83

Query: 177 TDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVTKLPN 229
              +    + L  L +L+L G+++ +      LK    L  L+L    VT L +
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 100/633 (15%), Positives = 179/633 (28%), Gaps = 187/633 (29%)

Query: 1   MERERESELVRLCIEAACQSGESVQKWRRQRRSLERLPAHLAD--SLLRHLIRRRLIFPS 58
           M ++  S  +RL         E + +     + +E +   L      L   I+     PS
Sbjct: 56  MSKDAVSGTLRL-FWTLLSKQEEMVQ-----KFVEEV---LRINYKFLMSPIKTEQRQPS 106

Query: 59  LLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLK 118
           ++    +  +   L  +N V                 NV   R         L     L 
Sbjct: 107 MMTR-MYIEQRDRLYNDNQV-------------FAKYNV--SRL---QPYLKLR--QALL 145

Query: 119 ELDLSRCVKVTDAGM----KHLLSISTL--EKL---------WLSETGLTADGIALLSSL 163
           EL  ++ V +   G+    K  +++      K+         WL+          +L  L
Sbjct: 146 ELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEML 202

Query: 164 QNLSV-LDLGGLPVTD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
           Q L   +D      +D    + LR   +  +L  L               K +     L 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS------------KPYEN-CLLV 249

Query: 219 LA--WTGVTKLPNISSLECLNLSNCTI----------DSILEGNENKAPLAKISLAGTTF 266
           L                   NL +C I          D +         L   S+  T  
Sbjct: 250 LLNVQN-----AKA--WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-- 299

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA 326
               E     ++ LL +LD     L R       + L       S+I             
Sbjct: 300 --PDEV----KSLLLKYLDCRPQDLPR-------EVLTTNPRRLSIIA-----------E 335

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID--DYAISY--MSMMPSLKFIDI 382
           ++R+   +   +       L        I+  S   ++  +Y   +  +S+ P       
Sbjct: 336 SIRDGLATWDNWKHVNCDKLT------TIIESSLNVLEPAEYRKMFDRLSVFPP------ 383

Query: 383 SNTDIKGFIQQVGAETDLVLSL--------TALQNLNHLERLNLEQTQVSDATLFPLSTF 434
            +  I            ++LSL          +  +N L + +L + Q  ++T+   S  
Sbjct: 384 -SAHI----------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-- 430

Query: 435 KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS---------- 484
              I+L L+     + +LH+    S + + +I     ++       PP            
Sbjct: 431 ---IYLELKVKLENEYALHR----SIVDHYNIPKTFDSD----DLIPPYLDQYFYSHIGH 479

Query: 485 -LKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLV 543
            LK ++      L     L F  +  +I            D    N       +L   L 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIR----------HDSTAWNASGSILNTL-QQLK 528

Query: 544 KQKQ---DPMPMSHSFLGGVLLFSMRYSFKCIH 573
             K    D  P     +  +L F  +     I 
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 7e-07
 Identities = 70/481 (14%), Positives = 135/481 (28%), Gaps = 149/481 (30%)

Query: 9   LVRLCIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAE 68
           L +L  +            R    S  +L  H   + LR L++ +               
Sbjct: 202 LQKLLYQIDPNWTS-----RSDHSSNIKLRIHSIQAELRRLLKSK--------------- 241

Query: 69  AIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKV 128
                                 Y   L V     V ++  W    ++C K L  +R  +V
Sbjct: 242 ---------------------PYENCLLVLL--NVQNAKAWNAFNLSC-KILLTTRFKQV 277

Query: 129 TDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDL-----GGLP-VTDLVL 181
           TD       +  +L+        LT D   +LL    +    DL        P    ++ 
Sbjct: 278 TDFLSAATTTHISLDHH---SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 182 RSLQVLTKLEYLDLWG--SQV-SNRGAAVLKMF-----P---RLSFLNLAWTGV----TK 226
            S++     + L  W     V  ++   +++       P   R  F  L+   V      
Sbjct: 335 ESIR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAH 386

Query: 227 LPNISSLECL--NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 284
           +P    L  +  ++    +  ++      + + K     T  I      +Y+E       
Sbjct: 387 IP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS----IYLE------- 434

Query: 285 DVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV-GANLRNLNLSNTRFSSAGV 343
                         ++K      L  S++  D   +       +L    L    +S    
Sbjct: 435 -------------LKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSH--- 476

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQ---------- 393
             +  HL N+E         +       ++   + F+D        F++Q          
Sbjct: 477 --IGHHLKNIE-------HPERM-----TLFRMV-FLDFR------FLEQKIRHDSTAWN 515

Query: 394 -VGAETDLVLSLTA-----LQNLNHLERL--NLEQTQVSDATLFPLSTFKELIHLSLRNA 445
             G+  + +  L         N    ERL   +             S + +L+ ++L   
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Query: 446 S 446
            
Sbjct: 576 D 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 80/484 (16%), Positives = 148/484 (30%), Gaps = 167/484 (34%)

Query: 159 LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN 218
           +LS  ++  V +     V D+  +S  +L+K E   +  S   +  +  L++F       
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDM-PKS--ILSKEEIDHIIMS--KDAVSGTLRLF------- 68

Query: 219 LAWTGVTKLPNISSLECLNLSNCTIDSILEGN----------ENKAPLAKISLAGTTFIN 268
             WT ++K   +            ++ +L  N          E + P    S+    +I 
Sbjct: 69  --WTLLSKQEEMVQK--------FVEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIE 114

Query: 269 EREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK-ALEHLDLSSS-----MIGD-DSVEMV 321
           +R+  LY +  + +  +VS     R     +++ AL  L  + +     ++G   +  + 
Sbjct: 115 QRDR-LYNDNQVFAKYNVS-----RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VA 167

Query: 322 ACVGANLRN-------------LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 368
             V     +             LNL N   S   V         LE+L     QID    
Sbjct: 168 LDV---CLSYKVQCKMDFKIFWLNLKNCN-SPETV---------LEMLQKLLYQIDPNWT 214

Query: 369 SYMSMMPSLKF-IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 427
           S      ++K  I     +++  ++    E  L L L  +QN       NL   +     
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNL-SCK----I 268

Query: 428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 487
           L  L+T         R   +TD           L+  +     L +  +    P     L
Sbjct: 269 L--LTT---------RFKQVTDF----------LSAATTTHISLDHHSMT-LTPDEVKSL 306

Query: 488 LDLHGGWLLTEDAIL--QFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASLVKQ 545
           L     +L      L  +    +PR      LS+I                   A  ++ 
Sbjct: 307 LLK---YLDCRPQDLPREVLTTNPRR-----LSII-------------------AESIRD 339

Query: 546 KQDPMPMSHSFLGGVLLFSMRYSFKCIHLTFFVCFSKTDQRLKYSREELLELQYSSLSLA 605
                                +                D     + ++L  +  SSL++ 
Sbjct: 340 -----------------GLATW----------------DNWKHVNCDKLTTIIESSLNVL 366

Query: 606 RPDD 609
            P +
Sbjct: 367 EPAE 370

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.7 bits (133), Expect = 2e-08
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 21/152 (13%)

Query: 303 LEHLDLSSSMIGDDSVEMVACVGA-NLRNLNL---SNTRFSSAGVGILA-----GHLPNL 353
           L+ L++ S  + D  VE +      NL  L L            + +          PNL
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 354 EILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 410
           + L +   +  +          ++P L+ +DIS     G +   GA     L L  +  +
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISA----GVLTDEGAR----LLLDHVDKI 306

Query: 411 NHLERLNLEQTQVSDATLFPL-STFKELIHLS 441
            HL+ +N++   +SD     L  +    I +S
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.6 bits (130), Expect = 5e-08
 Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 28/188 (14%)

Query: 296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV-GILAGHLPNLE 354
            L  M  L +L +  +    +++ +      NL++L + +     + V  IL   LPNLE
Sbjct: 167 VLDAMPLLNNLKIKGT----NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 355 ILSLSGTQIDD---------YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 405
            L L     D            +      P+LK++ I + + +           +V    
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ---------NVVVEMFL 273

Query: 406 ALQNLNHLERLNLEQTQVSD----ATLFPLSTFKELIHLSLRNASLTDVSLHQL-SSLSK 460
               L  LE +++    ++D      L  +   K L  ++++   L+D    +L  SL  
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM 333

Query: 461 LTNLSIRD 468
             ++S   
Sbjct: 334 KIDVSDSQ 341

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 7e-07
 Identities = 39/261 (14%), Positives = 87/261 (33%), Gaps = 38/261 (14%)

Query: 121 DLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIA------LLSSLQNLSVLDLGGL 174
           +   C  + D  +++    +  E L+  +       I+      L   L  + +L+   +
Sbjct: 120 EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI 179

Query: 175 PVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLE 234
             T+ +    +    L+ L++    + +     +                + LPN   LE
Sbjct: 180 KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDI--------------LGSDLPN---LE 222

Query: 235 CLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 294
            L L     D     + +      +  +   F N       ++   +   +  N  +  F
Sbjct: 223 KLVLYVGVEDYG--FDGDMNVFRPL-FSKDRFPN-------LKWLGIVDAEEQNVVVEMF 272

Query: 295 CFLTQMKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSNTRFSSAGVGILAGHLP 351
                +  LE +D+S+ ++ D+   ++        +L+ +N+     S      L   LP
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP 332

Query: 352 NLEILSLSGTQIDDYAISYMS 372
               + +S +Q  D   SY  
Sbjct: 333 MK--IDVSDSQEYDDDYSYPM 351

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 44/271 (16%), Positives = 92/271 (33%), Gaps = 40/271 (14%)

Query: 132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGG--LPVTDLVLRSLQVLTK 189
             + + + S  +K  +             ++ + L   +L      V    L S + L +
Sbjct: 317 TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQE 376

Query: 190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249
           LE  + W           L +   +  L+        L   S+L+ ++         L  
Sbjct: 377 LEPENKWCL---------LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR- 426

Query: 250 NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLS 309
                          +      + L +E + +  L +++  L+  C L Q+  + HLDLS
Sbjct: 427 ---------------SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS 471

Query: 310 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQIDDY- 366
            + +      + A     L  L  S+    +     + G  +LP L+ L L   ++    
Sbjct: 472 HNRLRALPPALAALR--CLEVLQASDNALEN-----VDGVANLPRLQELLLCNNRLQQSA 524

Query: 367 AISYMSMMPSLKFIDISN---TDIKGFIQQV 394
           AI  +   P L  +++        +G  +++
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 40/245 (16%), Positives = 85/245 (34%), Gaps = 22/245 (8%)

Query: 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL 280
                       L    LS      +    E+   L ++       +      +      
Sbjct: 339 ECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR-ALDP 397

Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
           L +   +    S    +  M+A    DL S  + ++SV       A++R L+L++   + 
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK--MEYADVRVLHLAHKDLTV 455

Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
             +  L   L  +  L LS  ++     + ++ +  L+ +  S+  ++            
Sbjct: 456 --LCHL-EQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE------------ 499

Query: 401 VLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 459
             ++  + NL  L+ L L   ++   A + PL +   L+ L+L+  SL      Q     
Sbjct: 500 --NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557

Query: 460 KLTNL 464
            L ++
Sbjct: 558 MLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 83  MAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTL 142
           + +L     +  L+++  R    +   AL  + CL+ L  S        G+ +L     L
Sbjct: 456 LCHLEQLLLVTHLDLSHNR--LRALPPALAALRCLEVLQASDNALENVDGVANLPR---L 510

Query: 143 EKLWLSETGLTA-DGIALLSSLQNLSVLDLGGLPVT---DLVLRSLQVLTKLEYLD 194
           ++L L    L     I  L S   L +L+L G  +     +  R  ++L  +  + 
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 38/251 (15%), Positives = 67/251 (26%), Gaps = 35/251 (13%)

Query: 210 MFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGN--ENKAPLAKISLA 262
           +      L    T +  +          LE + +S   +  ++E +   N   L +I + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 263 GTTFINEREAFLYIETSLLSFLDVSN---SSLSRFCFLTQMKALEHLDLSS----SMIGD 315
               +       +     L +L +SN     L     +        LD+        I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIER 146

Query: 316 DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP 375
           +S      +      L L+             G     E+       +++          
Sbjct: 147 NSF---VGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 435
               +DIS T I              L    L+NL  L   +    +     L  L    
Sbjct: 203 GPVILDISRTRIH------------SLPSYGLENLKKLRARSTYNLK----KLPTLEKLV 246

Query: 436 ELIHLSLRNAS 446
            L+  SL   S
Sbjct: 247 ALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 24/170 (14%), Positives = 53/170 (31%), Gaps = 10/170 (5%)

Query: 87  GAFRYLRSL---NVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE 143
           GAF     L    ++    +        + +  L E+ + +   +     +   ++  L+
Sbjct: 48  GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLP-VTDLVLRSLQVLT-KLEYLDLWGSQVS 201
            L +S TG+               +LD+     +  +   S   L+ +   L L  + + 
Sbjct: 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 202 NRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI 246
               +                 + +LP       S    L++S   I S+
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 30/209 (14%), Positives = 63/209 (30%), Gaps = 23/209 (11%)

Query: 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNT-RFSSAGVGIL 346
             + +  F +    LE +++S + +  + +E         L  + +              
Sbjct: 43  RVIQKGAF-SGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100

Query: 347 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS-NTDIKGFIQQVGAETDLVLSLT 405
              LPNL+ L +S T I      +         +DI  N +I              +   
Sbjct: 101 QN-LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------TIERN 147

Query: 406 ALQNL-NHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 462
           +   L      L L +  + +   + F  +   EL      N +L ++        S   
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL--NLSDNNNLEELPNDVFHGASGPV 205

Query: 463 NLSIRDAVLTNSGLGSFKPPRSLKLLDLH 491
            L I    + +      +  + L+    +
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTY 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 18/122 (14%)

Query: 375 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 434
            +   +    T ++            V+   A      LE++ + Q  V    +     F
Sbjct: 30  RNAIELRFVLTKLR------------VIQKGAFSGFGDLEKIEISQNDVL--EVIEADVF 75

Query: 435 ---KELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 490
               +L  + +  A +L  ++     +L  L  L I +  + +             LLD+
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 491 HG 492
             
Sbjct: 136 QD 137

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 29/157 (18%)

Query: 229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 288
             S ++ L L N   +             K+      F              L FL   N
Sbjct: 15  TPSDVKELVLDNSRSNEG-----------KLEGLTDEFEE------------LEFLSTIN 51

Query: 289 SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILA 347
             L+    L ++  L+ L+LS + +    +E++A    NL +LNLS  +    + +  L 
Sbjct: 52  VGLTSIANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110

Query: 348 GHLPNLEILSLSG---TQIDDYAISYMSMMPSLKFID 381
             L NL+ L L     T ++DY  +   ++P L ++D
Sbjct: 111 K-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 15/120 (12%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
           ++++ L L N+R +   +  L      LE LS     +    I+ +  +  LK +++S+ 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELSDN 74

Query: 386 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRN 444
            + G                  +   +L  LNL   ++ D +T+ PL   + L  L L N
Sbjct: 75  RVSG------------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 92  LRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG 151
           ++ L + + R               L+ L       +T   + +L  ++ L+KL LS+  
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTS--IANLPKLNKLKKLELSDNR 75

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRG---AAV 207
           ++     L     NL+ L+L G  + DL  +  L+ L  L+ LDL+  +V+N       V
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135

Query: 208 LKMFPRLSFL 217
            K+ P+L++L
Sbjct: 136 FKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 138 SISTLEKLWLSETGLTADGI-ALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLW 196
           + S +++L L  +      +  L    + L  L    + +T +   +L  L KL+ L+L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 197 GSQVSNRGAAVLKMFPRLSFLNLA------WTGVTKLPNISSLECLNLSNC 241
            ++VS     + +  P L+ LNL+       + +  L  + +L+ L+L NC
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 52/268 (19%), Positives = 91/268 (33%), Gaps = 50/268 (18%)

Query: 117 LKELDLSRCVKVTDAGMKHLLSIS--------TLEKLWLSETGLTADGIALLSSLQNLSV 168
           LK L +    ++    +   L +         TLE L ++ T       A    L  L++
Sbjct: 70  LKRLTVRA-ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 169 LDLGGLPVTDLVLRSLQVL-TKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW---TGV 224
            ++        +    Q L   L+ L +  +   N     +++FP LS L+L+     G 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 225 TKLPN------ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 278
             L +        +L+ L L N  +++                      +   + L    
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETP---------------------SGVCSALAAAR 227

Query: 279 SLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
             L  LD+S++SL              L  L+LS + +     ++   + A L  L+LS 
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLPAKLSVLDLSY 283

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQI 363
            R            LP +  LSL G   
Sbjct: 284 NRLDR---NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 54/284 (19%), Positives = 83/284 (29%), Gaps = 36/284 (12%)

Query: 152 LTADGIALLSSLQNLSVLDLGGLPVTDL-----VLRSLQVLTKLEYLDLWGSQVSNRGAA 206
           L A  + L    ++L  L        DL     +++SL  L +L             GA 
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGAL 89

Query: 207 VLKMFPRLSFLNLAWTGVTKLPNIS-------SLECLNLSNCTIDSILEGNENKAPLAKI 259
            +     L  L L    VT              L  LNL N +  +            K 
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 260 SLAGTTFINEREAFLYIET----SLLSFLDVSN------SSLSRFCFLTQMKALEHLDLS 309
            L   +           E       LS LD+S+        L       +   L+ L L 
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 310 SSMIGDDSVEMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 367
           ++ +   S    A   A   L+ L+LS+     A           L  L+LS T +    
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV- 268

Query: 368 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 411
                +   L  +D+S   +                L  + NL+
Sbjct: 269 --PKGLPAKLSVLDLSYNRLDRN--------PSPDELPQVGNLS 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 47/229 (20%), Positives = 77/229 (33%), Gaps = 29/229 (12%)

Query: 279 SLLSFLDVSNSSLSRFCFLTQMKA--LEHLDLSSSMIGDDSVEMVACV--GANLRNLNLS 334
           SL   L   ++      F   +K+  L+ L + ++ I    +     V   + L+ L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 335 NTRFSSAG-VGILAGHLPNLEILSLS----GTQIDDYAISYMSMMPSLKFIDISNTDIKG 389
           N   +      +L    P+L IL+L      T+    A     + P LK + I+      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-- 161

Query: 390 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS----TFKELIHLSLRNA 445
                     L  S   ++    L  L+L             +     F  L  L+LRNA
Sbjct: 162 ----------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 446 SLTDVSLHQLSSLSKLTNLSIRDA---VLTNS-GLGSFKPPRSLKLLDL 490
            +   S    +  +    L   D     L ++ G  S   P  L  L+L
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 25/221 (11%)

Query: 110 ALTGMTCLKELDLSRCVKVTDAGMKHLLSIS--TLEKLWLSETGLTADGIALLS----SL 163
            + G++ L+EL L    +VT      LL  +   L  L L           L        
Sbjct: 90  RVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 164 QNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR----GAAVLKMFPRLSFLNL 219
             L VL +      +     ++V   L  LDL  +          A     FP L  L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 220 AWTGVTKLPNI--------SSLECLNLSNCTIDSILEGNENKAP--LAKISLAGTTFINE 269
              G+     +          L+ L+LS+ ++           P  L  ++L+ T     
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--- 265

Query: 270 REAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 310
           ++    +   L S LD+S + L R     ++  + +L L  
Sbjct: 266 KQVPKGLPAKL-SVLDLSYNRLDRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 44/260 (16%), Positives = 90/260 (34%), Gaps = 34/260 (13%)

Query: 237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF 296
           +  NC   + +E       L  +     T  +  +    I++  L  L V  + +     
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 297 LTQMKA-----LEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGH- 349
              ++      L+ L L +  + G     ++   G +L  LNL N  +++    +     
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 350 --LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 407
              P L++LS++     +++   + + P+L  +D+S+    G    +       L    L
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI--SALCPLKFPTL 203

Query: 408 QNL----NHLERLNLEQTQVSDA---------------TLFPLSTF---KELIHLSLRNA 445
           Q L      +E  +   + ++ A                     +     +L  L+L   
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 446 SLTDVSLHQLSSLSKLTNLS 465
            L  V     + LS L +LS
Sbjct: 264 GLKQVPKGLPAKLSVL-DLS 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 45/271 (16%), Positives = 87/271 (32%), Gaps = 49/271 (18%)

Query: 105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQ 164
            S+       +  + L       +      +   +S  ++ + ++           ++  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALR----PYHDVLSQWQRHYNADRNRW-HSAWRQANSN 56

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLT--KLEYLDLWGSQVSNRGAAVLKMFP-------RLS 215
           N  +    G  +       L+  T      L+L            L  FP        L 
Sbjct: 57  NPQIETRTGRALKAT-ADLLEDATQPGRVALELRSVP--------LPQFPDQAFRLSHLQ 107

Query: 216 FLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINERE 271
            + +   G+ +LP      + LE L L+   + ++     +   L ++S+          
Sbjct: 108 HMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA-------- 159

Query: 272 AFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG--ANLR 329
                    L+ L    +S         +  L+ L L  + I      + A +    NL+
Sbjct: 160 ------CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----RSLPASIANLQNLK 209

Query: 330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
           +L + N+  S+ G  I   HLP LE L L G
Sbjct: 210 SLKIRNSPLSALGPAI--HHLPKLEELDLRG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 114 MTCLKELDLSRCVKVTD--AGMKHLLSISTLEKLWLSETGLTA--DGIALLSSLQNLSVL 169
           ++ L+ + +     + +    M+       LE L L+   L A    IA L+ L+ LS+ 
Sbjct: 103 LSHLQHMTIDAA-GLMELPDTMQQFAG---LETLTLARNPLRALPASIASLNRLRELSIR 158

Query: 170 D---LGGLPVT---DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFP-------RLSF 216
               L  LP            Q L  L+ L L  +         ++  P        L  
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--------IRSLPASIANLQNLKS 210

Query: 217 LNLAWTGVTKLP----NISSLECLNLSNC 241
           L +  + ++ L     ++  LE L+L  C
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 51/299 (17%), Positives = 87/299 (29%), Gaps = 52/299 (17%)

Query: 90  RYLRSLNVADCRRVTSSALW-ALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLS 148
               +L       +        L+        D +R             + +  +    +
Sbjct: 12  SGRENLYFQGSTALRP--YHDVLSQWQRHYNADRNRWHSAWR-----QANSNNPQIETRT 64

Query: 149 ETGLTADGIAL-LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV 207
              L A    L  ++      L+L  +P+          L+ L+++ +  +         
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAG-------- 115

Query: 208 LKMFP-------RLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSIL--EGNENKA 254
           L   P        L  L LA   +  LP    +++ L  L++  C   + L        A
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 255 PLAKISLAGTTFINEREAFLYIETSL---------LSFLDVSNSSLSRF-CFLTQMKALE 304
                 L     +      +    SL         L  L + NS LS     +  +  LE
Sbjct: 176 SGEHQGLVNLQSLRLEWTGI---RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 305 HLDLSSSMIGDDSVEMVACVG--ANLRNLNLSN-TRFSSAGVGILAGHLPNLEILSLSG 360
            LDL                G  A L+ L L + +   +  + I    L  LE L L G
Sbjct: 233 ELDLRGC---TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRG 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 42/283 (14%), Positives = 87/283 (30%), Gaps = 37/283 (13%)

Query: 229 NISSLECLNLSNCT-IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 287
           + S  E L     T +    +                     +       ++       +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRT 64

Query: 288 NSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG 344
             +L                 L+L S  +     +       +L+++ +           
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS--HLQHMTIDAAGLMELPDT 122

Query: 345 ILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 402
           +       LE L+L+   +     +I+ ++    L+ + I        + ++        
Sbjct: 123 M--QQFAGLETLTLARNPLRALPASIASLN---RLRELSIRACPE---LTELPEPLASTD 174

Query: 403 SLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNASLTDVSLHQLSSLSK 460
           +    Q L +L+ L LE T +      P  ++  + L  L +RN+ L+ +    +  L K
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGI---RSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPK 230

Query: 461 LTNLSIRDAVLTNSGLGSFKPP-----RSLKLLDLHGGWLLTE 498
           L  L +R      + L ++ PP       LK L L     L  
Sbjct: 231 LEELDLRG----CTALRNY-PPIFGGRAPLKRLILKDCSNLLT 268

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 37/152 (24%)

Query: 115 TCLKELDLSRCVKVTD--------AGMKHLLSISTLEKLWLSETGLTA--DGIALLSSLQ 164
             L+EL +  C ++T+                +  L+ L L  TG+ +    IA L +L+
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209

Query: 165 NLSVLD--LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFP-------RLS 215
           +L + +  L  L        ++  L KLE LDL G          L+ +P        L 
Sbjct: 210 SLKIRNSPLSALG------PAIHHLPKLEELDLRGC---TA----LRNYPPIFGGRAPLK 256

Query: 216 FLNLAW-TGVTKLP----NISSLECLNLSNCT 242
            L L   + +  LP     ++ LE L+L  C 
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 21/181 (11%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN- 384
            +   L+LS     +  +  L      L  L+L   ++    +     +P L  +D+S+ 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHN 87

Query: 385 --TDIKGFIQQVGAETDLVLS---LTAL-----QNLNHLERLNLEQTQVSDATLFPLSTF 434
               +    Q + A T L +S   LT+L     + L  L+ L L+  ++      P    
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL---KTLPPGLL 144

Query: 435 K---ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH 491
               +L  LSL N +LT++    L+ L  L  L +++  L     G F     L    LH
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLH 203

Query: 492 G 492
           G
Sbjct: 204 G 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 36/170 (21%), Positives = 51/170 (30%), Gaps = 35/170 (20%)

Query: 87  GAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI------- 139
                   L   +  R   + L     +  L  LDLS            L S+       
Sbjct: 49  ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH---------NQLQSLPLLGQTL 99

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
             L  L +S   LT+  +  L  L  L  L L G  +  L    L    KLE L L  + 
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249
                   L   P      L            +L+ L L   ++ +I +G
Sbjct: 160 --------LTELPAGLLNGL-----------ENLDTLLLQENSLYTIPKG 190

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)

Query: 297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 356
           L+ +KA +HL LS++ I  + +  ++ +  NLR L+L         +  L      LE L
Sbjct: 44  LSTLKACKHLALSTNNI--EKISSLSGM-ENLRILSLGRNLIKK--IENLDAVADTLEEL 98

Query: 357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL 416
            +S  QI    +S +  + +L+ + +SN  I  +             +  L  L+ LE L
Sbjct: 99  WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNW-----------GEIDKLAALDKLEDL 145

Query: 417 NLE 419
            L 
Sbjct: 146 LLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 38/214 (17%), Positives = 67/214 (31%), Gaps = 64/214 (29%)

Query: 182 RSLQVLTKLEYLDLWGSQVS-NRGAAVLKMFPRLSFLNLAWTGVTKLPNISS---LECLN 237
           R   V T+ E ++L G      +  A L        L L+   + K+ ++S    L  L+
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILS 76

Query: 238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 297
           L    I  I E  +                             L  L +S + ++    +
Sbjct: 77  LGRNLIKKI-ENLDAV------------------------ADTLEELWISYNQIASLSGI 111

Query: 298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 357
            ++  L  L +S++ I +            +  L                  L  LE L 
Sbjct: 112 EKLVNLRVLYMSNNKITNWG---------EIDKL----------------AALDKLEDLL 146

Query: 358 LSG----------TQIDDYAISYMSMMPSLKFID 381
           L+G              +Y I  +  +P+LK +D
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 26/199 (13%)

Query: 302 ALEHLDLSSSMIGDDSVEMVACVG-ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
            L+ LDLS   I   ++E  A    ++L  L L+     S  +G  +G L +L+ L    
Sbjct: 53  ELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVE 109

Query: 361 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ 420
           T +       +  + +LK +++++  I+   +                NL +LE L+L  
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY----------FSNLTNLEHLDLSS 158

Query: 421 TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-------KLTNLSIRDAVLTN 473
            ++        +  + L  + L N SL D+SL+ ++ +        +L  L++    L +
Sbjct: 159 NKI---QSIYCTDLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214

Query: 474 SGLGSFKPPRSLKLLDLHG 492
              G F    SL+ + LH 
Sbjct: 215 VPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 46/220 (20%), Positives = 74/220 (33%), Gaps = 39/220 (17%)

Query: 165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV 224
           +   LDL   P+  L   S     +L+ LDL   ++        +    LS L L    +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 225 TKLP-----NISSLECLNLSNCTIDSILEG-------------NENKAPLAKISLAGTTF 266
             L       +SSL+ L      + S+                  N   +    L    F
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--IQSFKLPE-YF 145

Query: 267 INEREAFLYIETSLLSFLDVSNSSLSR-----FCFLTQMKALE-HLDLSSSMIGDDSVEM 320
            N          + L  LD+S++ +          L QM  L   LDLS + +  + ++ 
Sbjct: 146 SN---------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM--NFIQP 194

Query: 321 VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 360
            A     L+ L L   +  S   GI    L +L+ + L  
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFD-RLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 35/176 (19%), Positives = 64/176 (36%), Gaps = 40/176 (22%)

Query: 87  GAFRYLRSLNVADCR--RVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIS---- 140
           GA++ L  L+        + S AL A +G++ L++L              +L S+     
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET---------NLASLENFPI 120

Query: 141 ----TLEKLWLSE---TGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL 193
               TL++L ++               S+L NL  LDL    +  +    L+VL ++  L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEG 249
           +L      N     +      +F  +             L+ L L    + S+ +G
Sbjct: 179 NLSLDLSLNP----MNFIQPGAFKEI------------RLKELALDTNQLKSVPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 32/200 (16%)

Query: 281 LSFLDVSNSSLSR-----FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 335
           L  LD+S   +       +  L+    L  L L+ + I   ++   + + ++L+ L    
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSH---LSTLILTGNPIQSLALGAFSGL-SSLQKLVAVE 109

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQV 394
           T  +S       GHL  L+ L+++   I  + +  Y S + +L+ +D+S+  I+      
Sbjct: 110 TNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ------ 162

Query: 395 GAETDLVLSLTALQNLNHLE----RLNLEQTQVSDATLFPLSTFK--ELIHLSLRNASLT 448
                  +  T L+ L+ +      L+L    +          FK   L  L+L    L 
Sbjct: 163 ------SIYCTDLRVLHQMPLLNLSLDLSLNPM---NFIQPGAFKEIRLKELALDTNQLK 213

Query: 449 DVSLHQLSSLSKLTNLSIRD 468
            V       L+ L  + +  
Sbjct: 214 SVPDGIFDRLTSLQKIWLHT 233

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 21/143 (14%)

Query: 109 WALTGMTCLKELDLSRC-VKVTDAGM-KHLLSISTLEKLWLSETGLTADGIALLSSLQNL 166
           W  T +T L  L LS   +    +     +     L  L LS   L      L S LQ L
Sbjct: 58  WTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLRYLDLSSNHLHTLDEFLFSDLQAL 114

Query: 167 SVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK 226
            VL L    +  +   + + + +L+ L L  +Q        +  FP     +        
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ--------ISRFPVELIKD-------- 158

Query: 227 LPNISSLECLNLSNCTIDSILEG 249
              +  L  L+LS+  +  +   
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 27/174 (15%)

Query: 284 LDVSN---SSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-----NLRNLNLSN 335
           LD+S+   S L      T++  L  L LS + +  + +       A     NLR L+LS+
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFIS----SEAFVPVPNLRYLDLSS 97

Query: 336 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 395
               +    + +  L  LE+L L    I     +    M  L+ + +S   I  F  ++ 
Sbjct: 98  NHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL- 155

Query: 396 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 449
                   +     L  L  L+L   ++      PL+  ++L         L +
Sbjct: 156 --------IKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPAWVKNGLYLHN 198

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 92  LRSLNVADCRRVTSSALW----ALTGMTCLKELDLSRCVKVTDAGMKHL---LSI-STLE 143
           L  +N+ +   +    L     AL   T +K+  +    +  D     L   L + +TL+
Sbjct: 38  LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLK 96

Query: 144 KLWLSETGLTADGI-ALLSSLQN---LSVLDLG------GLPVTDLVLRSLQVLTKLEYL 193
            L +    ++  GI AL+ +LQ+   L  L +       G  V   +   L+  T L   
Sbjct: 97  SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156

Query: 194 DLWGSQVSNRGAA 206
               +Q   R  A
Sbjct: 157 GYHFTQQGPRLRA 169

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 115 TCLKELDLSRCVKVTDAGMKHL---LSI-STLEKLWLSETGLTADG-IALLSSLQN---L 166
             L+E++L+  + +    +K     L   + ++K  +  T        AL   L+    L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 167 SVLDLGGLPVTDL-------VLRSLQVLTKLEYLDLWGSQVSNRG----AAVLKMFPRLS 215
             L++    ++          L+S   L +L  +D     + N      A +L+    L 
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIEL-RIDNQSQPLGNNVEMEIANMLEKNTTLL 154

Query: 216 FLNLAWT 222
                +T
Sbjct: 155 KFGYHFT 161

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 19/182 (10%)

Query: 326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 385
           A+ + L+L + + SS         L  L +L L+  ++          + +L+ + +++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 386 DIK----GFIQQVGAETDLVLS---LTALQ-----NLNHLERLNLEQTQVSDATLFPLST 433
            ++    G   Q+    +L L    L +L      +L  L  L+L   ++      P   
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL---QSLPKGV 152

Query: 434 F---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 490
           F     L  L L N  L  V       L++L  L + +  L     G+F     LK+L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 491 HG 492
             
Sbjct: 213 QE 214

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 50/249 (20%)

Query: 142 LEKLWLSETGLTA--DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
             +L L+   L++  D +        ++VL++    +  L     ++   LEYLD     
Sbjct: 61  FSELQLNRLNLSSLPDNL-----PPQITVLEITQNALISL----PELPASLEYLDACD-- 109

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAK 258
             NR + + ++   L  L++    +T LP   + LE +N  N  +  + E   +      
Sbjct: 110 --NRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTS------ 161

Query: 259 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGD--D 316
                                 L  L V N+ L+        ++LE LD+S++++     
Sbjct: 162 ----------------------LEVLSVRNNQLT--FLPELPESLEALDVSTNLLESLPA 197

Query: 317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 376
                               R +     I    L     + L    +       +S   +
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENI--LSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 377 LKFIDISNT 385
                    
Sbjct: 256 QPDYHGPRI 264

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 92  LRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHLLSI----STLE 143
           L+ +N+ + +RV+   + +L         +++  L+    ++D+  + L+ +     +L 
Sbjct: 43  LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLR 101

Query: 144 KLWLSETGLTADGI-ALLSSLQN---LSVLDLGGLPVTDL-------VLRSLQVLTKLEY 192
            L +    LT + +  LL S      +          + L       ++ +++    L  
Sbjct: 102 VLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 161

Query: 193 LDLWGSQVSNRGAA 206
           + +  + +  R   
Sbjct: 162 VGISFASMEARHRV 175

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 315 DDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPN---LEILSLSGTQIDDYAISY 370
           +  +  +     +L+ +N++N  R S   +  L     N   +E  SL+ T I D     
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89

Query: 371 MSMM----PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 426
           +  +    PSL+ +++ +  +            L+ S    Q++   +  N  Q+ + + 
Sbjct: 90  LIELIETSPSLRVLNVESNFLTP----ELLAR-LLRSTLVTQSIVEFKADNQRQSVLGNQ 144

Query: 427 TLFPLSTFKELIHLSLRNASLTDVSLH 453
                    +++     N SL  V + 
Sbjct: 145 VE------MDMMMAIEENESLLRVGIS 165

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 399 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK---ELIHLSLRNASLTDVSLHQL 455
             + SL  L    +L  L +E  Q        L   +   EL +L++  + L  V+    
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 456 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 492
               +L+ L++    L +    + +   SL+ L L G
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSG 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	619
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.02
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.75
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	92.36
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	88.31
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	82.18

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.9e-51  Score=446.30  Aligned_cols=485  Identities=18%  Similarity=0.173  Sum_probs=302.6

Q ss_pred             HHHHHHhccccccCchHHHHHHHHHHHHhhcc----ChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCC
Q 007082           24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLI----FPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVAD   99 (619)
Q Consensus        24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~----~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~   99 (619)
                      ...++|+...+..+|..++.. ++.|.-.+..    .|..+.. +++|++|+|++|. +....+..|+++++|++|+|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~-l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNS-TECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTT-CCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccCcCCCCCc-CcEEEccCCccCcCChhHhcc-CccceEEECCCCc-cceeChhhccCccccCeeeCCC
Confidence            345778889999999887761 1111111100    1222221 3455555555554 4444444555555555555555


Q ss_pred             CCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh
Q 007082          100 CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL  179 (619)
Q Consensus       100 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  179 (619)
                      |. +....+.+|+++++|++|++++| .++...+..++++++|++|++++|.+++.....+..+++|++|++++|.+.+.
T Consensus        91 n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  168 (606)
T 3t6q_A           91 NP-LIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL  168 (606)
T ss_dssp             CC-CSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred             Cc-ccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence            54 44444444555555666666555 44444444455556666666666655543323333456666666666666655


Q ss_pred             HHHHhhcCCCCC--EEEccCCccCchhhHhhcCC----------------------------------------------
Q 007082          180 VLRSLQVLTKLE--YLDLWGSQVSNRGAAVLKMF----------------------------------------------  211 (619)
Q Consensus       180 ~~~~~~~l~~L~--~L~l~~n~i~~~~~~~~~~~----------------------------------------------  211 (619)
                      .+..|+.+++|+  +|++++|.+.+..+..|...                                              
T Consensus       169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~  248 (606)
T 3t6q_A          169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF  248 (606)
T ss_dssp             CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred             ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence            555566666666  55555555544333222110                                              


Q ss_pred             -----CCCCEEecCCCCCCCC-----CCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHH---------
Q 007082          212 -----PRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREA---------  272 (619)
Q Consensus       212 -----~~L~~L~l~~n~l~~l-----~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---------  272 (619)
                           .+|+.|++++|.++.+     ..+++|++|++++|.++.+|..+..+++|++|++++|.+...++.         
T Consensus       249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  328 (606)
T 3t6q_A          249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT  328 (606)
T ss_dssp             GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred             chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence                 0233333333433322     235666666776666666666666666666666666666654332         


Q ss_pred             ---------------HhhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEc
Q 007082          273 ---------------FLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL  333 (619)
Q Consensus       273 ---------------~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L  333 (619)
                                     ..+..+++|++|++++|.+...    ..+..+++|++|++++|.+.+..+..+... ++|++|++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l  407 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDL  407 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEEC
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEEC
Confidence                           1123444555555555554443    134555666666666666655545455444 66777777


Q ss_pred             cCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcC
Q 007082          334 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL  413 (619)
Q Consensus       334 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L  413 (619)
                      ++|++++..+...++.+++|++|++++|.+++..+..+..+++|++|++++|++++....         ....+..+++|
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~~~l~~L  478 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---------KTNSLQTLGRL  478 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---------SSCGGGGCTTC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---------cchhhccCCCc
Confidence            777666544433335577777777777777776666677777788888877777653110         00168889999


Q ss_pred             CEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCC
Q 007082          414 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG  493 (619)
Q Consensus       414 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n  493 (619)
                      ++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++| .|++++|++++..|..+..+++|+.+++++|
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence            999999999998888999999999999999999999999999999999 9999999999988888888899999999999


Q ss_pred             ccCCHHHHHHHHHhCCC--eeeecccccccCCC
Q 007082          494 WLLTEDAILQFCKMHPR--IEVWHELSVICPSD  524 (619)
Q Consensus       494 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  524 (619)
                      ||.|+|...++.+|...  ..+.......|..|
T Consensus       558 ~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p  590 (606)
T 3t6q_A          558 PLDCTCSNIYFLEWYKENMQKLEDTEDTLCENP  590 (606)
T ss_dssp             CEECSGGGHHHHHHHHHCGGGEECGGGCBEEES
T ss_pred             CccccCCcHHHHHHHHhCcccccCCCCCeeCCc
Confidence            99999998888887642  22333444556554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-49  Score=432.77  Aligned_cols=442  Identities=18%  Similarity=0.153  Sum_probs=309.1

Q ss_pred             HHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCC
Q 007082           24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV  103 (619)
Q Consensus        24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  103 (619)
                      ...++|++..++.+|..++.                      ++++|+|++|. +....+..|+++++|++|++++|. +
T Consensus        13 ~~~~~c~~~~l~~ip~~~~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l   68 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIPS----------------------STKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-I   68 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCT----------------------TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred             CCceEccCCCcccCCCCCCC----------------------CcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCc-c
Confidence            34678899999999987654                      56777777766 555445556667777777777665 5


Q ss_pred             ChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh-hHHH
Q 007082          104 TSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLR  182 (619)
Q Consensus       104 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~  182 (619)
                      +...+.+|.++++|++|+|++| .++...+..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ..|.
T Consensus        69 ~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~  147 (606)
T 3vq2_A           69 ETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA  147 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred             cccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH
Confidence            5555555666777777777776 4555556666667777777777776666554556666777777777766654 3356


Q ss_pred             HhhcCCCCCEEEccCCccCchhhHhhcCCC---------------------------CCCEEecCCCCC-----------
Q 007082          183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMFP---------------------------RLSFLNLAWTGV-----------  224 (619)
Q Consensus       183 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~---------------------------~L~~L~l~~n~l-----------  224 (619)
                      .|+++++|++|++++|.+++..+..|..+.                           +|+.|++++|.+           
T Consensus       148 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~  227 (606)
T 3vq2_A          148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN  227 (606)
T ss_dssp             GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHT
T ss_pred             hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcc
Confidence            666667777777766666655444333322                           233333333322           


Q ss_pred             ----------------------------------------------------------------------CC---CCCCC
Q 007082          225 ----------------------------------------------------------------------TK---LPNIS  231 (619)
Q Consensus       225 ----------------------------------------------------------------------~~---l~~l~  231 (619)
                                                                                            ..   ++.++
T Consensus       228 l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~  307 (606)
T 3vq2_A          228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF  307 (606)
T ss_dssp             TTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTC
T ss_pred             ccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccc
Confidence                                                                                  21   11233


Q ss_pred             CCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEe
Q 007082          232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLD  307 (619)
Q Consensus       232 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~  307 (619)
                      +|++|++++|.+..+|. + .+++|++|++++|......   .+..+++|++|++++|.+++.    ..+..+++|++|+
T Consensus       308 ~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  382 (606)
T 3vq2_A          308 KWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD  382 (606)
T ss_dssp             CCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred             cCCEEEcccccCccccc-C-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence            44444444444444442 2 4455555555555322211   233566777777777776554    4566777788888


Q ss_pred             CcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCcc
Q 007082          308 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI  387 (619)
Q Consensus       308 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~  387 (619)
                      +++|.+++.. ..+..+ ++|+.|++++|++.+..+...++.+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       383 L~~n~l~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  460 (606)
T 3vq2_A          383 LSFNGAIIMS-ANFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF  460 (606)
T ss_dssp             CCSCSEEEEC-CCCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCccccch-hhccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence            8777766533 334444 78888888888877765533346788899999999888887777888889999999999988


Q ss_pred             Ccc-hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEc
Q 007082          388 KGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI  466 (619)
Q Consensus       388 ~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  466 (619)
                      ++. +|.            .+..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus       461 ~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  528 (606)
T 3vq2_A          461 KDNTLSN------------VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC  528 (606)
T ss_dssp             GGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred             CCcchHH------------hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence            873 566            7899999999999999999888999999999999999999999999999999999999999


Q ss_pred             CCCccCchhhccCCCCC-CCcEEEcCCCccCCHHHHHHHHHhCCC
Q 007082          467 RDAVLTNSGLGSFKPPR-SLKLLDLHGGWLLTEDAILQFCKMHPR  510 (619)
Q Consensus       467 ~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~~~  510 (619)
                      ++|+++.. |..+..++ +|+.+++++|||.|+|...|+.+|...
T Consensus       529 ~~N~l~~~-p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~  572 (606)
T 3vq2_A          529 SFNRIETS-KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE  572 (606)
T ss_dssp             TTSCCCCE-ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT
T ss_pred             CCCcCccc-CHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc
Confidence            99999954 55577776 699999999999999999999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-48  Score=423.89  Aligned_cols=444  Identities=18%  Similarity=0.198  Sum_probs=359.8

Q ss_pred             cchhHHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCC
Q 007082           20 SGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVAD   99 (619)
Q Consensus        20 ~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~   99 (619)
                      .......++|++..+..+|..++.                      +++.|+|++|. ++...+..|.++++|++|+|++
T Consensus         5 ~~~~~~~~~c~~~~l~~ip~~l~~----------------------~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~   61 (570)
T 2z63_A            5 EVVPNITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSR   61 (570)
T ss_dssp             EEETTTEEECCSSCCSSCCSSSCS----------------------SCCEEECCSCC-CCEECTTTTTTCSSCCEEECTT
T ss_pred             ccCCCcEEEeCCCCccccCCCccc----------------------cccEEEccCCc-cCccChhHhhCCCCceEEECCC
Confidence            333344578888899999986554                      68888888887 6555556778888888888888


Q ss_pred             CCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh
Q 007082          100 CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL  179 (619)
Q Consensus       100 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~  179 (619)
                      |. ++...+.+|.++++|++|+|++| .++...+..|+++++|++|++++|.++......++.+++|++|++++|.+.+.
T Consensus        62 n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~  139 (570)
T 2z63_A           62 CE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  139 (570)
T ss_dssp             CC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC
T ss_pred             Cc-CCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee
Confidence            86 66666666888888888888888 56666667788888888888888888776555678888888888888887763


Q ss_pred             -HHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCC----CEEecCCCCCCCC---------------------------
Q 007082          180 -VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKL---------------------------  227 (619)
Q Consensus       180 -~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L----~~L~l~~n~l~~l---------------------------  227 (619)
                       .|..|+++++|++|++++|.+++..+..+..+++|    +.+++++|.+..+                           
T Consensus       140 ~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  219 (570)
T 2z63_A          140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT  219 (570)
T ss_dssp             CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHH
T ss_pred             cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhh
Confidence             46778888888888888888887766666666666    6677766654422                           


Q ss_pred             -----------------------------------------------------------CCCCCCcEEEcCCcccccccc
Q 007082          228 -----------------------------------------------------------PNISSLECLNLSNCTIDSILE  248 (619)
Q Consensus       228 -----------------------------------------------------------~~l~~L~~L~l~~~~l~~l~~  248 (619)
                                                                                 ..+++|++|++++|.+..+|.
T Consensus       220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~  299 (570)
T 2z63_A          220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD  299 (570)
T ss_dssp             HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB
T ss_pred             hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh
Confidence                                                                       124677777888887777777


Q ss_pred             ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhH--HHHHHhcCC
Q 007082          249 GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS--VEMVACVGA  326 (619)
Q Consensus       249 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~  326 (619)
                      .+..+ +|++|++++|.+..++.    ..+++|+.|++++|.+........+++|++|++++|.+++..  +..+..+ +
T Consensus       300 ~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~  373 (570)
T 2z63_A          300 FSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-T  373 (570)
T ss_dssp             CCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-S
T ss_pred             hhccC-CccEEeeccCcccccCc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc-C
Confidence            77777 88888888888775554    367888888888888776644478899999999999988654  4566666 9


Q ss_pred             CCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH-HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       327 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      +|++|++++|.+.+....  +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.            
T Consensus       374 ~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------  439 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------------  439 (570)
T ss_dssp             CCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT------------
T ss_pred             ccCEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh------------
Confidence            999999999998886554  3679999999999999887655 4678899999999999999988887            


Q ss_pred             hhccCCcCCEEEccCCCCC-CCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082          406 ALQNLNHLERLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS  484 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  484 (619)
                      .+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  519 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS  519 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence            7899999999999999987 568889999999999999999999998999999999999999999999998888999999


Q ss_pred             CcEEEcCCCccCCHHHHHHHH-HhC
Q 007082          485 LKLLDLHGGWLLTEDAILQFC-KMH  508 (619)
Q Consensus       485 L~~l~l~~n~~~~~~~~~~~~-~~~  508 (619)
                      |+.+++++|++.|+|...++. .|.
T Consensus       520 L~~L~l~~N~~~~~~~~~~~~~~wl  544 (570)
T 2z63_A          520 LQKIWLHTNPWDCSCPRIDYLSRWL  544 (570)
T ss_dssp             CCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             CcEEEecCCcccCCCcchHHHHHHH
Confidence            999999999999999765554 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-48  Score=432.10  Aligned_cols=425  Identities=19%  Similarity=0.155  Sum_probs=320.7

Q ss_pred             CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcC-CCCCc
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLS-ISTLE  143 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~-l~~L~  143 (619)
                      ++|++|++++|. +.+..+..++.+++|++|++++|. +....+.  ..+++|++|++++| .+++..+..+.. +++|+
T Consensus       223 ~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~--~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~  297 (768)
T 3rgz_A          223 SALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQ-FVGPIPP--LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLT  297 (768)
T ss_dssp             CSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSC-CEESCCC--CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCS
T ss_pred             CCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCc-ccCccCc--cccCCCCEEECcCC-ccCCccCHHHHhhcCcCC
Confidence            445555555554 444444455555555555555544 2211111  14455555555555 333333444443 36777


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHH-hhcCCCCCEEEccCCccCchhhHhhcCCC-CCCEEecCC
Q 007082          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFP-RLSFLNLAW  221 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~  221 (619)
                      +|++++|.+++..+..|+.+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..|..+..++ +|+.|++++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~  377 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS  377 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccC
Confidence            7777777666665666777777777777777766544443 67777777777777777766666666665 777777777


Q ss_pred             CCCCC-----CCC--CCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcch
Q 007082          222 TGVTK-----LPN--ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR  293 (619)
Q Consensus       222 n~l~~-----l~~--l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  293 (619)
                      |.+.+     +..  +++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+
T Consensus       378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~  456 (768)
T 3rgz_A          378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEG  456 (768)
T ss_dssp             SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-HHhcCCCCCEEECCCCcccC
Confidence            76652     112  677999999999888 5677777899999999999998865443 35678999999999999986


Q ss_pred             h--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHh
Q 007082          294 F--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM  371 (619)
Q Consensus       294 ~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  371 (619)
                      .  ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|++++..+..+ +.+++|++|++++|.+++..|..+
T Consensus       457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l  534 (768)
T 3rgz_A          457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAEL  534 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGG
T ss_pred             cCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-CCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHH
Confidence            5  678889999999999999998877777777 999999999999998777766 679999999999999998888899


Q ss_pred             hCCCCCcEEEccCCccCcchhccccchhh----------------------------------------hh---------
Q 007082          372 SMMPSLKFIDISNTDIKGFIQQVGAETDL----------------------------------------VL---------  402 (619)
Q Consensus       372 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~----------------------------------------~~---------  402 (619)
                      ..+++|++|++++|++++.+|........                                        +.         
T Consensus       535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence            99999999999999999887763211000                                        00         


Q ss_pred             ---------hHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082          403 ---------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       403 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  473 (619)
                               ....+..+++|++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|||++|+++|
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence                     00135567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCCCcEEEcCCCccCC
Q 007082          474 SGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       474 ~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      .+|..+..++.|+.||+++|++..
T Consensus       695 ~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          695 RIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             cCChHHhCCCCCCEEECcCCcccc
Confidence            999999999999999999999854

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-48  Score=436.14  Aligned_cols=445  Identities=19%  Similarity=0.221  Sum_probs=294.2

Q ss_pred             HHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCCh
Q 007082           26 KWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTS  105 (619)
Q Consensus        26 ~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  105 (619)
                      .++|+...++.+|. ++.                      ++++|||++|. +....+..|.++++|++|+|++|..+..
T Consensus         8 ~~dcs~~~L~~vP~-lp~----------------------~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~   63 (844)
T 3j0a_A            8 IAFYRFCNLTQVPQ-VLN----------------------TTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLT   63 (844)
T ss_dssp             EEEESCCCSSCCCS-SCT----------------------TCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCE
T ss_pred             EEEccCCCCCCCCC-CCC----------------------CcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccc
Confidence            56788889999997 544                      68888888877 6665566677888888888888754444


Q ss_pred             HHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHH--HhhcCCCCCEEEcCCCCCChhHH-H
Q 007082          106 SALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIA--LLSSLQNLSVLDLGGLPVTDLVL-R  182 (619)
Q Consensus       106 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~-~  182 (619)
                      ..+.+|.++++|++|+|++| .+....+..|+++++|++|++++|.+++..+.  .|+.+++|++|++++|.+.+..+ .
T Consensus        64 i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~  142 (844)
T 3j0a_A           64 IDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP  142 (844)
T ss_dssp             ECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG
T ss_pred             cCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch
Confidence            44566777888888888887 56666677777888888888888877764333  36777888888888887766543 4


Q ss_pred             HhhcCCCCCEEEccCCccCchhhHhhcCC--CC------------------------------CCEEecCCCCCCC----
Q 007082          183 SLQVLTKLEYLDLWGSQVSNRGAAVLKMF--PR------------------------------LSFLNLAWTGVTK----  226 (619)
Q Consensus       183 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~--~~------------------------------L~~L~l~~n~l~~----  226 (619)
                      .|+++++|++|++++|.+++..+..+..+  ++                              |+.|++++|.+..    
T Consensus       143 ~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  222 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG  222 (844)
T ss_dssp             GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred             hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence            67778888888888777765544444332  22                              5666666654321    


Q ss_pred             -------------------------------------CCC--CCCCcEEEcCCccccccccc-cCCCCCccEEeccCccc
Q 007082          227 -------------------------------------LPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTF  266 (619)
Q Consensus       227 -------------------------------------l~~--l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~  266 (619)
                                                           +..  .++|+.|++++|.+..+++. +..+++|+.|++++|.+
T Consensus       223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i  302 (844)
T 3j0a_A          223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI  302 (844)
T ss_dssp             GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC
T ss_pred             HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC
Confidence                                                 000  24567777777766655443 33677777777777777


Q ss_pred             cchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHH
Q 007082          267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVG  344 (619)
Q Consensus       267 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  344 (619)
                      .+.++. .+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++... 
T Consensus       303 ~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~-  379 (844)
T 3j0a_A          303 NKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIHF-  379 (844)
T ss_dssp             CEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSCCCSS-
T ss_pred             CCCChH-HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCCcccC-
Confidence            665443 345667777777777777655  456667777777777777665554444444 667777776666654311 


Q ss_pred             HHHhcCCCCcEEE--------------------ccCCCCChH-HHHHhhCCCCCcEEEccCCccCcchhccccc------
Q 007082          345 ILAGHLPNLEILS--------------------LSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGFIQQVGAE------  397 (619)
Q Consensus       345 ~~~~~~~~L~~L~--------------------l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~------  397 (619)
                           +++|+.|+                    +++|++++. .+..+..+++|++|++++|++++..+.....      
T Consensus       380 -----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~  454 (844)
T 3j0a_A          380 -----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE  454 (844)
T ss_dssp             -----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCC
T ss_pred             -----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccc
Confidence                 22222222                    222222221 1122335566666666666655432210000      


Q ss_pred             -----hhhh-------hhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEE
Q 007082          398 -----TDLV-------LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLS  465 (619)
Q Consensus       398 -----~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  465 (619)
                           ...+       .....|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++++++..+.  ++|+.|+
T Consensus       455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~  532 (844)
T 3j0a_A          455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD  532 (844)
T ss_dssp             BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEE
T ss_pred             cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEE
Confidence                 0000       0001467778888888888888888888888889999999999998887766665  7899999


Q ss_pred             cCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhC
Q 007082          466 IRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH  508 (619)
Q Consensus       466 L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  508 (619)
                      |++|++++..|..+   .+|+.+++++|||.|+|.+.++..|.
T Consensus       533 Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~  572 (844)
T 3j0a_A          533 ISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWL  572 (844)
T ss_dssp             EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred             CCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHH
Confidence            99999988877665   58899999999999999888777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.5e-47  Score=417.16  Aligned_cols=475  Identities=18%  Similarity=0.216  Sum_probs=291.7

Q ss_pred             HHHHHhccccccCchHHHHHHHHHHHHhhcc---Ch-hhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCC
Q 007082           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLI---FP-SLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADC  100 (619)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~---~p-~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~  100 (619)
                      +.++|++..+..+|..++. .++.|...+..   .| ..+.. +++|++|+|++|. +....+..|+++++|++|+|++|
T Consensus         7 ~~~~cs~~~L~~ip~~~~~-~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLPT-NITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCSCT-TCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccccccCC-CCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC
Confidence            4578889999999987763 12222111111   22 22332 4788999998887 66666777888899999999888


Q ss_pred             CCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhH
Q 007082          101 RRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLV  180 (619)
Q Consensus       101 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  180 (619)
                      . ++.....+|+++++|++|++++| .+....+..|+++++|++|++++|.+++..+..++.+++|++|++++|.+.+..
T Consensus        84 ~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           84 E-LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             C-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             c-cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence            6 66555556888889999999988 566665667888899999999998888776677788889999999999888877


Q ss_pred             HHHhh--cCCCCCEEEccCCccCchhhHhhcCC---------------------------CC------------------
Q 007082          181 LRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMF---------------------------PR------------------  213 (619)
Q Consensus       181 ~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~---------------------------~~------------------  213 (619)
                      +..+.  .+++|++|++++|.+++..+..|..+                           ++                  
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            76654  46889999998888776655544322                           22                  


Q ss_pred             --------CCEEecCCCCCCC-----CCCCCCCcEEEcCCcccccccc-ccCC---------------------------
Q 007082          214 --------LSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNEN---------------------------  252 (619)
Q Consensus       214 --------L~~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~-~~~~---------------------------  252 (619)
                              |+.|++++|.+..     +..+++|++|++++|.+..+++ .+..                           
T Consensus       242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~  321 (680)
T 1ziw_A          242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID  321 (680)
T ss_dssp             TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred             hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence                    4555555554432     2245556666665555543322 1112                           


Q ss_pred             ------CCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC----------------------------cchh--hh
Q 007082          253 ------KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS----------------------------LSRF--CF  296 (619)
Q Consensus       253 ------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~----------------------------l~~~--~~  296 (619)
                            +++|++|++++|.+.+.++. .+..+++|++|++++|.                            ++..  ..
T Consensus       322 ~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~  400 (680)
T 1ziw_A          322 DFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA  400 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred             hhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence                  23333333333333332221 12233333333333332                            1111  12


Q ss_pred             hhcCCCCCEEeCcCCCCChhHH-HHHHhcCCCCcEEEccCCCCCCchHHHH-------------------------HhcC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVGIL-------------------------AGHL  350 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~-------------------------~~~~  350 (619)
                      +..+++|++|++++|.+++..+ ..+..+ ++|++|++++|++++..+..+                         ++.+
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTC-TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCc-ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            3334444444444444432211 122222 444444444443322211111                         1234


Q ss_pred             CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082          351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  430 (619)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  430 (619)
                      ++|++|++++|++++..+..|.++++|++|++++|++++..+...+.    .....|.++++|++|++++|+++...+..
T Consensus       480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~N~l~~i~~~~  555 (680)
T 1ziw_A          480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG----GPIYFLKGLSHLHILNLESNGFDEIPVEV  555 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT----SCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC----CcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence            44555555555555444444455555555555555554332110000    00013677888888888888888655567


Q ss_pred             ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCC-CCCCCcEEEcCCCccCCHHHH-HHHHHhC
Q 007082          431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGGWLLTEDAI-LQFCKMH  508 (619)
Q Consensus       431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~-~~~~~~~  508 (619)
                      |..+++|+.|+|++|+++++++..|..+++|+.|+|++|++++..+..+. .+++|+.+++++|||.|+|.. .||.+|.
T Consensus       556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~  635 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI  635 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCS
T ss_pred             cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHH
Confidence            88899999999999999988888888899999999999999988777666 578999999999999999985 7777776


Q ss_pred             CC
Q 007082          509 PR  510 (619)
Q Consensus       509 ~~  510 (619)
                      ..
T Consensus       636 ~~  637 (680)
T 1ziw_A          636 NE  637 (680)
T ss_dssp             SC
T ss_pred             Hh
Confidence            43

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.9e-46  Score=414.94  Aligned_cols=413  Identities=22%  Similarity=0.238  Sum_probs=320.8

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      +++|++|+|++|. +.+..+. ++.+++|++|++++|. ++...+..+.++++|++|++++| .+....+..  .+++|+
T Consensus       199 l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~  272 (768)
T 3rgz_A          199 CVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQ  272 (768)
T ss_dssp             CTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTCC
T ss_pred             CCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCCC
Confidence            3456666666665 3333333 5566666666666665 55455556666666666666666 333222221  566666


Q ss_pred             EEEccCCCCChhHHHHhhc-CCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHh-hcCCCCCCEEecCC
Q 007082          144 KLWLSETGLTADGIALLSS-LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAV-LKMFPRLSFLNLAW  221 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~  221 (619)
                      +|++++|.+++..+..+.. +++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|.. +..+++|++|++++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            6666666665444444444 477888888877777777777777888888888888777555544 77788888888888


Q ss_pred             CCCC-CCC----CCC-CCcEEEcCCcccc-ccccccCC--CCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082          222 TGVT-KLP----NIS-SLECLNLSNCTID-SILEGNEN--KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (619)
Q Consensus       222 n~l~-~l~----~l~-~L~~L~l~~~~l~-~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  292 (619)
                      |.+. .++    .++ +|++|++++|.+. .++..+..  +++|++|++++|.+.+..+. .+..+++|+.|++++|.++
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS  431 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEE
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCccc
Confidence            8776 333    344 7888888888777 35555554  77899999999988854433 3558899999999999987


Q ss_pred             hh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082          293 RF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  370 (619)
Q Consensus       293 ~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  370 (619)
                      +.  ..+..+++|++|++++|.+.+..+..+... ++|++|++++|++++..+..+ +.+++|++|++++|++++..|..
T Consensus       432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGG
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCcCCHHH-hcCCCCCEEEccCCccCCcCChH
Confidence            65  678899999999999999998888777777 999999999999998767666 67999999999999999988999


Q ss_pred             hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc-------------------
Q 007082          371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL-------------------  431 (619)
Q Consensus       371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------  431 (619)
                      ++.+++|++|++++|++++.+|.            .+..+++|++|++++|.+++.+|..+                   
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~  577 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGNIPA------------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY  577 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCG------------GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred             HhcCCCCCEEECCCCcccCcCCH------------HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence            99999999999999999999998            89999999999999999887666543                   


Q ss_pred             ---------------------------------------------------cCCCCCCEEecCCCCCCchhHHhhcCCCC
Q 007082          432 ---------------------------------------------------STFKELIHLSLRNASLTDVSLHQLSSLSK  460 (619)
Q Consensus       432 ---------------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  460 (619)
                                                                         ..+++|+.|+|++|++++.+|..++.+++
T Consensus       578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~  657 (768)
T 3rgz_A          578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY  657 (768)
T ss_dssp             EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence                                                               33578999999999999999999999999


Q ss_pred             CCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          461 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       461 L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      |+.|+|++|+++|.+|..+..+++|+.||+++|.+..
T Consensus       658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence            9999999999999999999999999999999999854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.8e-45  Score=394.19  Aligned_cols=434  Identities=21%  Similarity=0.226  Sum_probs=282.6

Q ss_pred             HHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChH
Q 007082           27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS  106 (619)
Q Consensus        27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  106 (619)
                      ++++...++.+|..++.                      ++++|+|++|. +.+..+..|+++++|++|++++|. ++..
T Consensus        10 c~~~~~~l~~ip~~~~~----------------------~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~   65 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTA----------------------AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTI   65 (549)
T ss_dssp             EECTTSCCSSCCSCCCT----------------------TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEE
T ss_pred             EECCCCccccccccCCC----------------------CccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCcc
Confidence            56677888888876543                      57778887776 555555567777778888887776 6665


Q ss_pred             HHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChh-HHHHhhcCCCCCEEEcCCCC-CChhHHHHh
Q 007082          107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLP-VTDLVLRSL  184 (619)
Q Consensus       107 ~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~  184 (619)
                      .+.+|.++++|++|++++| .+....+..++++++|++|++++|.+++. .+..++.+++|++|++++|. +....+..|
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  144 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF  144 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             ChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence            5566777777888888777 56666666677777788888877777653 23456777777777777776 444434567


Q ss_pred             hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCccccccc---ccc-CCCCC
Q 007082          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL---EGN-ENKAP  255 (619)
Q Consensus       185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l~---~~~-~~~~~  255 (619)
                      .++++|++|++++|.+++..|..+..+++|+.|++++|.+..++     .+++|++|++++|.+..++   ..+ ..+++
T Consensus       145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             hcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence            77777777777777777766666666666666666666555432     3556666666666555431   111 13444


Q ss_pred             ccEEeccCccccchhHHH---h----------------------------------------------------------
Q 007082          256 LAKISLAGTTFINEREAF---L----------------------------------------------------------  274 (619)
Q Consensus       256 L~~L~l~~~~~~~~~~~~---~----------------------------------------------------------  274 (619)
                      |+.|++++|.+.+.....   .                                                          
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~  304 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST  304 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred             ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence            444444444433211100   0                                                          


Q ss_pred             -hhccCCCcEEeccCCCcchhh--hhhcCCCCCEEeCcCCCCChhHHHH---HHhcCCCCcEEEccCCCCCCchH-HHHH
Q 007082          275 -YIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEM---VACVGANLRNLNLSNTRFSSAGV-GILA  347 (619)
Q Consensus       275 -~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~-~~~~  347 (619)
                       +....+|+.|++++|.+..++  .+..+++|++|++++|.+++..+..   +..+ ++|+.|++++|++++... ...+
T Consensus       305 ~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~  383 (549)
T 2z81_A          305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW-PSLQTLVLSQNHLRSMQKTGEIL  383 (549)
T ss_dssp             HHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS-TTCCEEECTTSCCCCHHHHHHHG
T ss_pred             hhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcc-ccCcEEEccCCcccccccchhhh
Confidence             112244555555555555441  2245666666666666666654432   2222 666666666666666432 1223


Q ss_pred             hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082          348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  427 (619)
Q Consensus       348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  427 (619)
                      +.+++|++|++++|+++.. |..+..+++|++|++++|++++....             +  .++|++|++++|++++..
T Consensus       384 ~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~~~-------------~--~~~L~~L~Ls~N~l~~~~  447 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC-------------I--PQTLEVLDVSNNNLDSFS  447 (549)
T ss_dssp             GGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCCTT-------------S--CTTCSEEECCSSCCSCCC
T ss_pred             hcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCcccccch-------------h--cCCceEEECCCCChhhhc
Confidence            5566666777766666642 33455666666777766666543221             1  246777888887777542


Q ss_pred             cccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHH-HHHHH
Q 007082          428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI-LQFCK  506 (619)
Q Consensus       428 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~  506 (619)
                          ..+++|++|+|++|+++.++.  ...+++|+.|+|++|++++..+..+..+++|+.|++++|+|.|+|.. .++.+
T Consensus       448 ----~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~  521 (549)
T 2z81_A          448 ----LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR  521 (549)
T ss_dssp             ----CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred             ----ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHH
Confidence                478999999999999997543  46789999999999999999888899999999999999999999984 44445


Q ss_pred             hC
Q 007082          507 MH  508 (619)
Q Consensus       507 ~~  508 (619)
                      |.
T Consensus       522 ~l  523 (549)
T 2z81_A          522 WL  523 (549)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.9e-45  Score=400.24  Aligned_cols=462  Identities=17%  Similarity=0.179  Sum_probs=343.8

Q ss_pred             HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (619)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  104 (619)
                      ..++|++..+..||+.++.                      ++++|||++|. ++...+..|+++++|++|+|++|+ ++
T Consensus        34 ~~~~c~~~~l~~vP~~lp~----------------------~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N~-i~   89 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLPF----------------------STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQ   89 (635)
T ss_dssp             TEEECTTSCCSSCCSSSCT----------------------TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred             CEEECCCCCcCccCCCCCc----------------------CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCCc-CC
Confidence            3567899999999988766                      79999999998 776667789999999999999997 88


Q ss_pred             hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh-HHHH
Q 007082          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRS  183 (619)
Q Consensus       105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~  183 (619)
                      .....+|.++++|++|+|++| .++...+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+... .+..
T Consensus        90 ~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  168 (635)
T 4g8a_A           90 TIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  168 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             CcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh
Confidence            777778999999999999999 68877778899999999999999999988777899999999999999998764 4677


Q ss_pred             hhcCCCCCEEEccCCccCchhhHhhcCCCCC----CEEecCCCCCCCCC-----------------------------C-
Q 007082          184 LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL----SFLNLAWTGVTKLP-----------------------------N-  229 (619)
Q Consensus       184 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L----~~L~l~~n~l~~l~-----------------------------~-  229 (619)
                      +..+++|++|++++|.+++..+..|..+.++    ..++++.|.+..++                             . 
T Consensus       169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l  248 (635)
T 4g8a_A          169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL  248 (635)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred             hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCC
Confidence            8899999999999999988777666544332    24555555443211                             0 


Q ss_pred             --------------------------------------------------------CCCCcEEEcCCccccccccccCCC
Q 007082          230 --------------------------------------------------------ISSLECLNLSNCTIDSILEGNENK  253 (619)
Q Consensus       230 --------------------------------------------------------l~~L~~L~l~~~~l~~l~~~~~~~  253 (619)
                                                                              ..+++.+.+.++.+..+.. +...
T Consensus       249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~  327 (635)
T 4g8a_A          249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN  327 (635)
T ss_dssp             TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSC
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccc
Confidence                                                                    1122233333333322221 2234


Q ss_pred             CCccEEeccCccccchhHHH------------------hhhccCCCcEEeccCCCcchh----hhhhcCCCCCEEeCcCC
Q 007082          254 APLAKISLAGTTFINEREAF------------------LYIETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSS  311 (619)
Q Consensus       254 ~~L~~L~l~~~~~~~~~~~~------------------~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~L~~L~l~~n  311 (619)
                      ..++.|++.+|.+...+...                  ....+++|+.+++++|.+...    ..+..+.+|+++++..+
T Consensus       328 ~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~  407 (635)
T 4g8a_A          328 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN  407 (635)
T ss_dssp             CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC
T ss_pred             hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc
Confidence            56777777777665443210                  111334455555555444322    22334445555555544


Q ss_pred             CCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCc-c
Q 007082          312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG-F  390 (619)
Q Consensus       312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~-~  390 (619)
                      ....... .+... ++|+.+++.++......+...+..+++++.++++.|.+....+..+..++.|+.|++++|++.. .
T Consensus       408 ~~~~~~~-~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~  485 (635)
T 4g8a_A          408 GVITMSS-NFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  485 (635)
T ss_dssp             SEEEECS-CCTTC-TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             ccccccc-ccccc-ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc
Confidence            4322111 12222 6677777776655443333334668899999999999988888888899999999999998544 4


Q ss_pred             hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082          391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                      .|.            .|..+++|++|+|++|++++..|..|.++++|++|+|++|+++++++..|..+++|+.|+|++|+
T Consensus       486 ~~~------------~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          486 LPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             ECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             Cch------------hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence            555            78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhccCCCC-CCCcEEEcCCCccCCHHHHHHHHHhCCC--eeeecccccccCCCCC
Q 007082          471 LTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMHPR--IEVWHELSVICPSDQI  526 (619)
Q Consensus       471 l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  526 (619)
                      +++..|..+..+ ++|+.|++++|||.|+|.+.||.+|...  ..+.+.....|..|..
T Consensus       554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~  612 (635)
T 4g8a_A          554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  612 (635)
T ss_dssp             CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred             CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence            999999999887 6899999999999999999999888732  1223333455665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=379.52  Aligned_cols=449  Identities=18%  Similarity=0.179  Sum_probs=327.1

Q ss_pred             HHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChH
Q 007082           27 WRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSS  106 (619)
Q Consensus        27 ~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  106 (619)
                      +++++..++.+|..++                      +++++|+|++|. +.+..+..|+++++|++|+|++|+ ++..
T Consensus         5 l~ls~n~l~~ip~~~~----------------------~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~   60 (520)
T 2z7x_B            5 VDRSKNGLIHVPKDLS----------------------QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNR-IQYL   60 (520)
T ss_dssp             EECTTSCCSSCCCSCC----------------------TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSC-CCEE
T ss_pred             EecCCCCccccccccc----------------------ccccEEECCCCc-ccccChhhccccccccEEecCCCc-cCCc
Confidence            4566777777876543                      379999999998 766777889999999999999998 7777


Q ss_pred             HHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChh-HHHHhhcCCCCCEEEcCCCCCChhHHHHhh
Q 007082          107 ALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQ  185 (619)
Q Consensus       107 ~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~  185 (619)
                      .+.+|+++++|++|+|++| .++.. +..  .+++|++|++++|.+++. .+..|+.+++|++|++++|.+.+.   .+.
T Consensus        61 ~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~  133 (520)
T 2z7x_B           61 DISVFKFNQELEYLDLSHN-KLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVL  133 (520)
T ss_dssp             EGGGGTTCTTCCEEECCSS-CCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGG
T ss_pred             ChHHhhcccCCCEEecCCC-ceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcc
Confidence            7778999999999999999 66643 222  789999999999999874 457899999999999999998873   566


Q ss_pred             cCCCC--CEEEccCCcc--CchhhHhhcCCC-CCCEEecCCCCCCC------CCCCCCCcEEEcCCcc-------ccccc
Q 007082          186 VLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNLAWTGVTK------LPNISSLECLNLSNCT-------IDSIL  247 (619)
Q Consensus       186 ~l~~L--~~L~l~~n~i--~~~~~~~~~~~~-~L~~L~l~~n~l~~------l~~l~~L~~L~l~~~~-------l~~l~  247 (619)
                      .+++|  ++|++++|.+  .+..|..+..+. +...+++++|.+..      +..+++|+.+++++|.       +....
T Consensus       134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  213 (520)
T 2z7x_B          134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL  213 (520)
T ss_dssp             GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred             ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence            77777  9999999998  666777666644 22244555555432      2245666666666654       33333


Q ss_pred             cccCCCCCccEEeccCccccchhHH--HhhhccCCCcEEeccCCCcchh--hhh-----hcC------------------
Q 007082          248 EGNENKAPLAKISLAGTTFINEREA--FLYIETSLLSFLDVSNSSLSRF--CFL-----TQM------------------  300 (619)
Q Consensus       248 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~--~~~-----~~~------------------  300 (619)
                      +.+..+++|+.|++.++.+.+....  ......++|++|++++|.+.+.  ..+     ..+                  
T Consensus       214 ~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~  293 (520)
T 2z7x_B          214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS  293 (520)
T ss_dssp             HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTH
T ss_pred             hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchh
Confidence            3444555666666655554432111  0111234555555555554421  111     333                  


Q ss_pred             --------CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCCh--HHHHH
Q 007082          301 --------KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD--YAISY  370 (619)
Q Consensus       301 --------~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~  370 (619)
                              .+|+.|++++|.+.....  ... +++|++|++++|++++..+..+ +.+++|++|++++|++++  ..+..
T Consensus       294 ~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~  369 (520)
T 2z7x_B          294 YIYEIFSNMNIKNFTVSGTRMVHMLC--PSK-ISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEM  369 (520)
T ss_dssp             HHHHHHHTCCCSEEEEESSCCCCCCC--CSS-CCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred             hhhcccccCceeEEEcCCCccccccc--hhh-CCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHH
Confidence                    345555555555543221  022 3899999999999998666655 679999999999999997  45577


Q ss_pred             hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                      +..+++|++|++++|++++.+|..           .+..+++|++|++++|++++..|..+.  ++|+.|++++|+++.+
T Consensus       370 ~~~l~~L~~L~Ls~N~l~~~l~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i  436 (520)
T 2z7x_B          370 TTQMKSLQQLDISQNSVSYDEKKG-----------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI  436 (520)
T ss_dssp             HTTCTTCCEEECCSSCCBCCGGGC-----------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC
T ss_pred             HhhCCCCCEEECCCCcCCcccccc-----------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc
Confidence            899999999999999999855542           478899999999999999877776654  7999999999999964


Q ss_pred             hHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHH-HHhCCCeeeecccccccCCC
Q 007082          451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF-CKMHPRIEVWHELSVICPSD  524 (619)
Q Consensus       451 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  524 (619)
                       |..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|+|...|+ ..|.............|..|
T Consensus       437 -p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p  510 (520)
T 2z7x_B          437 -PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  510 (520)
T ss_dssp             -CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred             -chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCc
Confidence             55566999999999999999976555588899999999999999999999988 66654322223334455554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.8e-42  Score=371.99  Aligned_cols=416  Identities=19%  Similarity=0.207  Sum_probs=356.7

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      .+++++|+|++|. +....+..|+++++|++|+|++|. +....+.+|.++++|++|+|++| .+....+..++++++|+
T Consensus        32 ~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  108 (606)
T 3t6q_A           32 PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALK  108 (606)
T ss_dssp             CTTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCC
T ss_pred             CCcCcEEEccCCc-cCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCC-cccccChhhhccccccc
Confidence            4579999999998 777777789999999999999997 77777778999999999999999 67777788899999999


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCC--EEecCC
Q 007082          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLS--FLNLAW  221 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~--~L~l~~  221 (619)
                      +|++++|.+++..+..++.+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..|..+++|+  .|++++
T Consensus       109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~  188 (606)
T 3t6q_A          109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG  188 (606)
T ss_dssp             EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred             EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence            999999999988777899999999999999999886545566699999999999999998899999999999  899999


Q ss_pred             CCCCCCCC----CC----------------------------------------------------CCcEEEcCCccccc
Q 007082          222 TGVTKLPN----IS----------------------------------------------------SLECLNLSNCTIDS  245 (619)
Q Consensus       222 n~l~~l~~----l~----------------------------------------------------~L~~L~l~~~~l~~  245 (619)
                      |.+..++.    ..                                                    +|+.|++++|.+..
T Consensus       189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            98875331    11                                                    56778888888887


Q ss_pred             cccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHH-HH
Q 007082          246 ILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVE-MV  321 (619)
Q Consensus       246 l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~-~~  321 (619)
                      +++. +..+++|++|++++|.+..++..  +..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+. .+
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCSCCCSS--CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             cCHHHhccccCCCEEeccCCccCCCChh--hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            7766 44889999999999999877764  45789999999999998876  4678899999999999987743333 34


Q ss_pred             HhcCCCCcEEEccCCCCCCch--HHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchh
Q 007082          322 ACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD  399 (619)
Q Consensus       322 ~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~  399 (619)
                      ..+ ++|++|++++|.+++..  +..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..     
T Consensus       347 ~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----  419 (606)
T 3t6q_A          347 ENL-ENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-----  419 (606)
T ss_dssp             TTC-TTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-----
T ss_pred             hcc-CcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-----
Confidence            455 89999999999998764  3334 67899999999999998888888889999999999999998776542     


Q ss_pred             hhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch---hHHhhcCCCCCCEEEcCCCccCchhh
Q 007082          400 LVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV---SLHQLSSLSKLTNLSIRDAVLTNSGL  476 (619)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~  476 (619)
                            .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+..+++|++|++++|++++..|
T Consensus       420 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          420 ------PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             ------TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             ------hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence                  488999999999999999988889999999999999999999873   22568889999999999999999988


Q ss_pred             ccCCCCCCCcEEEcCCCccCC
Q 007082          477 GSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       477 ~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      ..+..+++|+.|++++|++..
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCG
T ss_pred             hhhccccCCCEEECCCCccCc
Confidence            999999999999999998854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.3e-42  Score=372.19  Aligned_cols=406  Identities=17%  Similarity=0.152  Sum_probs=309.9

Q ss_pred             ccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEE
Q 007082           67 AEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLW  146 (619)
Q Consensus        67 l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~  146 (619)
                      -.+++.+++. ++ .+|..+  .++|++|+|++|. ++.....+|.++++|++|++++| .++...+..|.++++|++|+
T Consensus        13 ~~~~~c~~~~-l~-~ip~~~--~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~   86 (606)
T 3vq2_A           13 NITYQCMDQK-LS-KVPDDI--PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLI   86 (606)
T ss_dssp             TTEEECTTSC-CS-SCCTTS--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred             CCceEccCCC-cc-cCCCCC--CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeE
Confidence            4678888876 32 223222  2789999999987 77777777999999999999999 77877788899999999999


Q ss_pred             ccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCc-hhhHhhcCCCCCCEEecCCCCCC
Q 007082          147 LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSN-RGAAVLKMFPRLSFLNLAWTGVT  225 (619)
Q Consensus       147 L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~  225 (619)
                      +++|.+++..+..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..|..|.++++|++|++++|.++
T Consensus        87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            99999999888899999999999999999988877789999999999999999986 56889999999999999999887


Q ss_pred             CCC-----CCCC----CcEEEcCCccccccccccC---------------------------------------------
Q 007082          226 KLP-----NISS----LECLNLSNCTIDSILEGNE---------------------------------------------  251 (619)
Q Consensus       226 ~l~-----~l~~----L~~L~l~~~~l~~l~~~~~---------------------------------------------  251 (619)
                      .++     .+.+    +.+|++++|.+..+++..+                                             
T Consensus       167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            543     1111    3355555555544433332                                             


Q ss_pred             ----------------------------------------------------------CCCCccEEeccCccccchhHHH
Q 007082          252 ----------------------------------------------------------NKAPLAKISLAGTTFINEREAF  273 (619)
Q Consensus       252 ----------------------------------------------------------~~~~L~~L~l~~~~~~~~~~~~  273 (619)
                                                                                .+++|++|++++|.+..++.  
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~--  324 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT--  324 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCC--
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccccc--
Confidence                                                                      22233333444443332221  


Q ss_pred             hhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhH--HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCC
Q 007082          274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS--VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP  351 (619)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  351 (619)
                       + .+++|+.|++++|.......+..+++|++|++++|.+++..  +..+..+ ++|++|++++|.+++.. .. +..++
T Consensus       325 -~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~-~~-~~~l~  399 (606)
T 3vq2_A          325 -L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAIIMS-AN-FMGLE  399 (606)
T ss_dssp             -C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEEEC-CC-CTTCT
T ss_pred             -C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC-CcccEeECCCCccccch-hh-ccCCC
Confidence             1 44555555555553332234556677777777777776542  4455555 78888888888776653 22 25678


Q ss_pred             CCcEEEccCCCCChHHH-HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCC-CCcc
Q 007082          352 NLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLF  429 (619)
Q Consensus       352 ~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~  429 (619)
                      +|++|++++|.+.+..+ ..+..+++|++|++++|++++..|.            .+.++++|++|++++|.+++ ..|.
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG------------IFLGLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh------------hhcCCCCCCEEECCCCcCCCcchHH
Confidence            88888888888777665 5677888888888888888877776            78889999999999998887 3678


Q ss_pred             cccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       430 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      .+..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++..
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred             hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence            88889999999999999999888889999999999999999999888889889999999999998853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.2e-42  Score=381.08  Aligned_cols=408  Identities=14%  Similarity=0.168  Sum_probs=300.8

Q ss_pred             CCccEEeccCCCCCChHHHHHHhcCCCccEEEc-CCCCCCChH-------------------------------------
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNV-ADCRRVTSS-------------------------------------  106 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~-------------------------------------  106 (619)
                      .+++.|+|+++. +.+.++..++++++|++|+| ++|. +...                                     
T Consensus       323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEECccCC-CCCcCchHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            479999999998 77888899999999999999 5553 2111                                     


Q ss_pred             ---HHHHhh-----------CCCCCCEEeCCC--CCCCChhhHhhhcCCCCCcEEEccCCCCCh----------------
Q 007082          107 ---ALWALT-----------GMTCLKELDLSR--CVKVTDAGMKHLLSISTLEKLWLSETGLTA----------------  154 (619)
Q Consensus       107 ---~~~~l~-----------~~~~L~~L~L~~--~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~----------------  154 (619)
                         ....+.           ....++.+.+..  | .++. .|..++++++|++|+|++|.+++                
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~  478 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK  478 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccC-cccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence               000011           111222222322  2 3333 45667888888888888888887                


Q ss_pred             -hHHHHhh--cCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCc-cCc-hhhHhhcCCC-------CCCEEecCCC
Q 007082          155 -DGIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMFP-------RLSFLNLAWT  222 (619)
Q Consensus       155 -~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~~-------~L~~L~l~~n  222 (619)
                       ..|..++  ++++|++|+|++|.+.+..|..|.++++|++|++++|. +++ .+|..+..++       +|+.|++++|
T Consensus       479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence             2455555  88888888888888888888888888888888888887 777 6776555444       8888888888


Q ss_pred             CCCCCC------CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCC-CcEEeccCCCcchhh
Q 007082          223 GVTKLP------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFC  295 (619)
Q Consensus       223 ~l~~l~------~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~  295 (619)
                      .++.+|      .+++|+.|++++|.+..+| .+..+++|+.|++++|.+..++..  +..+++ |+.|++++|.++.++
T Consensus       559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECCSSCCCSCC
T ss_pred             cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECcCCCCCcCc
Confidence            877655      4678888888888888777 666888888888888888866653  456777 888888888887663


Q ss_pred             -hhhcC--CCCCEEeCcCCCCChhHHHHH---Hh-cCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH
Q 007082          296 -FLTQM--KALEHLDLSSSMIGDDSVEMV---AC-VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  368 (619)
Q Consensus       296 -~~~~~--~~L~~L~l~~n~l~~~~~~~~---~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  368 (619)
                       .+..+  ++|+.|++++|.+.+..+...   .. .+++|+.|++++|.++..+ ..++..+++|+.|++++|.++..+.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcCCccCh
Confidence             33333  348889999888876433211   10 0147889999999988664 4444678899999999998885544


Q ss_pred             HHhhCC-------CCCcEEEccCCccCcchhccccchhhhhhHHhhc--cCCcCCEEEccCCCCCCCCcccccCCCCCCE
Q 007082          369 SYMSMM-------PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELIH  439 (619)
Q Consensus       369 ~~~~~~-------~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  439 (619)
                      ..+...       ++|++|+|++|+++ .+|.            .+.  .+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~------------~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~  780 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD------------DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA  780 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG------------GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCE
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchH------------HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCE
Confidence            433322       38999999999888 4455            455  88999999999999986 6888888999999


Q ss_pred             EecCC------CCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          440 LSLRN------ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       440 L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      |+|++      |.+.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++..
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            99876      778888888889999999999999999 55566554  689999999998744

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-42  Score=377.13  Aligned_cols=409  Identities=13%  Similarity=0.180  Sum_probs=317.1

Q ss_pred             CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCC------CC---------hHHHH-----------------Hh-
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRR------VT---------SSALW-----------------AL-  111 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~------~~---------~~~~~-----------------~l-  111 (619)
                      .+++.|+|+++. +.+.++..++++++|++|+|++|..      +.         .....                 .+ 
T Consensus        81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            479999999998 7788888999999999999999852      01         00000                 00 


Q ss_pred             ------------------hCCCCCCEEeCCC-CCCCChhhHhhhcCCCCCcEEEccCCCCChh-----------------
Q 007082          112 ------------------TGMTCLKELDLSR-CVKVTDAGMKHLLSISTLEKLWLSETGLTAD-----------------  155 (619)
Q Consensus       112 ------------------~~~~~L~~L~L~~-~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-----------------  155 (619)
                                        .....++.+.+.. +..++. .+..++++++|++|++++|.+++.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                              0011222222322 224445 566788888888998888888874                 


Q ss_pred             HHHHhh--cCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCc-cCc-hhhHhhcCC------CCCCEEecCCCCCC
Q 007082          156 GIALLS--SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-VSN-RGAAVLKMF------PRLSFLNLAWTGVT  225 (619)
Q Consensus       156 ~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~------~~L~~L~l~~n~l~  225 (619)
                      .|..++  ++++|++|++++|.+.+..|..|.++++|++|++++|. +++ ..|..+..+      ++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            566666  88888999988888888888888888889999988887 887 777777665      88888998888887


Q ss_pred             CCC------CCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCC-CcEEeccCCCcchhh-h
Q 007082          226 KLP------NISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSL-LSFLDVSNSSLSRFC-F  296 (619)
Q Consensus       226 ~l~------~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~-~  296 (619)
                      .++      .+++|++|++++|.+. .+| .+..+++|++|++++|.+..++..  +..+++ |+.|++++|.++.++ .
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~~L~~L~Ls~N~l~~lp~~  395 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN--FCGFTEQVENLSFAHNKLKYIPNI  395 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT--SEEECTTCCEEECCSSCCSSCCSC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh--hhhhcccCcEEEccCCcCcccchh
Confidence            665      4678888999998888 777 666888899999999888866654  457788 999999999888663 3


Q ss_pred             hhcC--CCCCEEeCcCCCCChhHHHHHH-------hcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH
Q 007082          297 LTQM--KALEHLDLSSSMIGDDSVEMVA-------CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA  367 (619)
Q Consensus       297 ~~~~--~~L~~L~l~~n~l~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  367 (619)
                      +..+  ++|++|++++|.+++..+..+.       .. ++|+.|++++|+++..... ++..+++|++|++++|.++..+
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~-~~~~l~~L~~L~Ls~N~l~~i~  473 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIP  473 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTH-HHHTTCCCSEEECCSSCCSBCC
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHH-HHccCCCCCEEECCCCCCCCcC
Confidence            3333  4899999999999887666554       33 6899999999999976444 4466899999999999998655


Q ss_pred             HHHhhCCC-------CCcEEEccCCccCcchhccccchhhhhhHHhhc--cCCcCCEEEccCCCCCCCCcccccCCCCCC
Q 007082          368 ISYMSMMP-------SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELI  438 (619)
Q Consensus       368 ~~~~~~~~-------~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  438 (619)
                      ...+....       +|++|++++|+++ .+|.            .+.  .+++|++|+|++|++++ +|..+..+++|+
T Consensus       474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~------------~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD------------DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             SSSSEETTEECTTGGGCCEEECCSSCCC-BCCG------------GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             HHHhccccccccccCCccEEECcCCcCC-ccCh------------hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence            44444333       8999999999998 4555            455  89999999999999997 788899999999


Q ss_pred             EEec------CCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          439 HLSL------RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       439 ~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      .|+|      ++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.|++++|++.|
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            9999      56778888889999999999999999999 45566554  799999999998876

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-41  Score=370.33  Aligned_cols=386  Identities=13%  Similarity=0.141  Sum_probs=318.1

Q ss_pred             CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCC------CC--------------------------hhhHhhhc
Q 007082           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVK------VT--------------------------DAGMKHLL  137 (619)
Q Consensus        90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~------l~--------------------------~~~~~~l~  137 (619)
                      .+++.|+|+++. +....+.+++++++|++|+|++|..      ..                          ...+..+.
T Consensus        81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            589999999987 6666677899999999999999832      00                          00000000


Q ss_pred             -------------------CCCCCcEEEcc--CCCCChhHHHHhhcCCCCCEEEcCCCCCChh-----------------
Q 007082          138 -------------------SISTLEKLWLS--ETGLTADGIALLSSLQNLSVLDLGGLPVTDL-----------------  179 (619)
Q Consensus       138 -------------------~l~~L~~L~L~--~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------  179 (619)
                                         ....++.+.+.  .|.+++ .|..++++++|++|++++|.+.+.                 
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence                               01122222222  356666 577899999999999999999985                 


Q ss_pred             HHHHhh--cCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC-CCC--CC----C------CCCCcEEEcCCcccc
Q 007082          180 VLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--LP----N------ISSLECLNLSNCTID  244 (619)
Q Consensus       180 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~--l~----~------l~~L~~L~l~~~~l~  244 (619)
                      .|..++  ++++|++|++++|.+.+..|..|.++++|++|++++|. ++.  +|    .      +++|++|++++|.++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            788888  99999999999999999999999999999999999998 874  43    3      389999999999999


Q ss_pred             cccc--ccCCCCCccEEeccCcccc-chhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCC-CCEEeCcCCCCChhHHH
Q 007082          245 SILE--GNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSVE  319 (619)
Q Consensus       245 ~l~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~-L~~L~l~~n~l~~~~~~  319 (619)
                      .+|.  .+..+++|+.|++++|.+. .++   .+..+++|+.|++++|.++.+ ..+..+++ |++|++++|.++. .+.
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~  394 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN  394 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCS
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cch
Confidence            9998  8889999999999999999 555   566889999999999999876 56888999 9999999999984 333


Q ss_pred             HHHhc-CCCCcEEEccCCCCCCchHHHHHh-------cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcch
Q 007082          320 MVACV-GANLRNLNLSNTRFSSAGVGILAG-------HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI  391 (619)
Q Consensus       320 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~  391 (619)
                      .+... .++|+.|++++|.+++..+..+ .       .+++|++|++++|.++..++..+..+++|++|++++|+++...
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~  473 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNF-DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP  473 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSS-CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhh-cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence            33332 1389999999999998766554 3       4679999999999999877777888999999999999998443


Q ss_pred             hccccchhhhhhHHhhcc-------CCcCCEEEccCCCCCCCCccccc--CCCCCCEEecCCCCCCchhHHhhcCCCCCC
Q 007082          392 QQVGAETDLVLSLTALQN-------LNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLT  462 (619)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  462 (619)
                      +.            .+..       +++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+
T Consensus       474 ~~------------~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          474 KN------------SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             SS------------SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             HH------------HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence            33            3333       349999999999999 6788876  89999999999999999 677888999999


Q ss_pred             EEEc------CCCccCchhhccCCCCCCCcEEEcCCCccC
Q 007082          463 NLSI------RDAVLTNSGLGSFKPPRSLKLLDLHGGWLL  496 (619)
Q Consensus       463 ~L~L------~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  496 (619)
                      .|+|      ++|++.+..|..+..+++|+.|++++|.+.
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  579 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR  579 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence            9999      568888899999999999999999999983

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.8e-42  Score=368.16  Aligned_cols=433  Identities=16%  Similarity=0.174  Sum_probs=303.8

Q ss_pred             HHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC
Q 007082           25 QKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT  104 (619)
Q Consensus        25 ~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  104 (619)
                      +.+++++..++.+|..++.                      ++++|+|++|. +....+..|+++++|++|+|++|. ++
T Consensus        34 ~~l~ls~~~L~~ip~~~~~----------------------~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~   89 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLPP----------------------RTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNR-IR   89 (562)
T ss_dssp             CEEECTTSCCCSCCTTSCT----------------------TCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCC-CC
T ss_pred             cEEEcCCCCCccCCCCCCC----------------------CcCEEECCCCC-ccccChhhhccCCCccEEECCCCC-CC
Confidence            4566777778888865443                      68889998887 666556678888889999998887 77


Q ss_pred             hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhH-HHHhhcCCCCCEEEcCCCCCChhHHHH
Q 007082          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADG-IALLSSLQNLSVLDLGGLPVTDLVLRS  183 (619)
Q Consensus       105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~  183 (619)
                      ...+.+|.++++|++|+|++| .++.. +..  .+++|++|++++|.+++.. +..|+++++|++|++++|.+.+.   .
T Consensus        90 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~  162 (562)
T 3a79_B           90 SLDFHVFLFNQDLEYLDVSHN-RLQNI-SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D  162 (562)
T ss_dssp             EECTTTTTTCTTCCEEECTTS-CCCEE-CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T
T ss_pred             cCCHHHhCCCCCCCEEECCCC-cCCcc-Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c
Confidence            666677888888999999888 55532 222  7888889999888887754 36788888899999888888764   3


Q ss_pred             hhcCCCC--CEEEccCCcc--CchhhHhhcCCC-CCCEEecCCCCCCC------CCCCCCCcEEEcCCcc-----ccccc
Q 007082          184 LQVLTKL--EYLDLWGSQV--SNRGAAVLKMFP-RLSFLNLAWTGVTK------LPNISSLECLNLSNCT-----IDSIL  247 (619)
Q Consensus       184 ~~~l~~L--~~L~l~~n~i--~~~~~~~~~~~~-~L~~L~l~~n~l~~------l~~l~~L~~L~l~~~~-----l~~l~  247 (619)
                      +..+++|  ++|++++|.+  ++..+..+..+. ..-.++++.|.+..      +..+++|+.+++++|.     +....
T Consensus       163 ~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~  242 (562)
T 3a79_B          163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL  242 (562)
T ss_dssp             TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred             hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence            4444555  8888888887  666666665543 11133445554432      1234556666666653     11222


Q ss_pred             cccCCCCCccEEeccCccccchhH--HHhhhccCCCcEEeccCCCcchh-------------------------------
Q 007082          248 EGNENKAPLAKISLAGTTFINERE--AFLYIETSLLSFLDVSNSSLSRF-------------------------------  294 (619)
Q Consensus       248 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~-------------------------------  294 (619)
                      ..+...++|+.+++.++.+.+...  .......++|++|++++|.+++.                               
T Consensus       243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~  322 (562)
T 3a79_B          243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKE  322 (562)
T ss_dssp             HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHH
T ss_pred             HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChh
Confidence            223344444444444443332110  00011123444444444443311                               


Q ss_pred             --hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChH--HHHH
Q 007082          295 --CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISY  370 (619)
Q Consensus       295 --~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~  370 (619)
                        ..+....+|++|++++|.+.....  ... +++|++|++++|.+++..+..+ +.+++|++|++++|++++.  .+..
T Consensus       323 ~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~  398 (562)
T 3a79_B          323 ALYSVFAEMNIKMLSISDTPFIHMVC--PPS-PSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALM  398 (562)
T ss_dssp             HHHHHHHTCCCSEEEEESSCCCCCCC--CSS-CCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred             hhhhhhccCcceEEEccCCCcccccC--ccC-CCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhh
Confidence              111122567888888777654321  022 3899999999999998666555 6799999999999999973  4567


Q ss_pred             hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                      +..+++|++|++++|++++.+|..           .+..+++|++|++++|++++..|..+.  ++|+.|+|++|+++.+
T Consensus       399 ~~~l~~L~~L~l~~N~l~~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i  465 (562)
T 3a79_B          399 TKNMSSLETLDVSLNSLNSHAYDR-----------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI  465 (562)
T ss_dssp             TTTCTTCCEEECTTSCCBSCCSSC-----------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred             hcCCCCCCEEECCCCcCCCccChh-----------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence            889999999999999998855542           588899999999999999877666553  7999999999999975


Q ss_pred             hHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHH
Q 007082          451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK  506 (619)
Q Consensus       451 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  506 (619)
                      ++ .+..+++|++|+|++|++++..+..+..+++|+.+++++|+|.|+|...++.+
T Consensus       466 p~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  520 (562)
T 3a79_B          466 PK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS  520 (562)
T ss_dssp             CT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred             Ch-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence            44 45599999999999999997655558889999999999999999999988865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.2e-41  Score=351.26  Aligned_cols=374  Identities=18%  Similarity=0.139  Sum_probs=229.0

Q ss_pred             CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEE
Q 007082           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKL  145 (619)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L  145 (619)
                      ++++|+|++|. +....+..|+++++|++|++++|.........+|.++++|++|+|++| .++...+..++++++|++|
T Consensus        31 ~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           31 HVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred             ccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence            46666666655 444444445555555555555554211222333455555555555555 3444444445555555555


Q ss_pred             EccCCCCChhHHHH--hhcCCCCCEEEcCCCCCChhHHHH-hhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC
Q 007082          146 WLSETGLTADGIAL--LSSLQNLSVLDLGGLPVTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT  222 (619)
Q Consensus       146 ~L~~~~~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n  222 (619)
                      ++++|.+++..+..  |+.+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..+           
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-----------  177 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF-----------  177 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG-----------
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc-----------
Confidence            55555554433332  444555555555555544443332 4444555555555544444433333322           


Q ss_pred             CCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCC
Q 007082          223 GVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKA  302 (619)
Q Consensus       223 ~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  302 (619)
                            ...+|+.|++++|.+..++.....                .                      .....+..+++
T Consensus       178 ------~~~~L~~L~l~~n~l~~~~~~~~~----------------~----------------------~~~~~~~~~~~  213 (455)
T 3v47_A          178 ------QGKHFTLLRLSSITLQDMNEYWLG----------------W----------------------EKCGNPFKNTS  213 (455)
T ss_dssp             ------TTCEEEEEECTTCBCTTCSTTCTT----------------H----------------------HHHCCTTTTCE
T ss_pred             ------ccccccccccccCcccccchhhcc----------------c----------------------cccccccccce
Confidence                  013344444444444433221100                0                      00001112233


Q ss_pred             CCEEeCcCCCCChhHHHHHHhcC--CCCcEEEccCCCCCC----------chHHHHH-hcCCCCcEEEccCCCCChHHHH
Q 007082          303 LEHLDLSSSMIGDDSVEMVACVG--ANLRNLNLSNTRFSS----------AGVGILA-GHLPNLEILSLSGTQIDDYAIS  369 (619)
Q Consensus       303 L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~L~~n~l~~----------~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~  369 (619)
                      |++|++++|.+++..+..+....  ++|+.|++++|...+          .....+. -.+++|++|++++|.+++..+.
T Consensus       214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence            44444444444433333332211  334444444332211          1111110 1247899999999999998888


Q ss_pred             HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082          370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  449 (619)
Q Consensus       370 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  449 (619)
                      .+..+++|++|++++|++++..+.            .|.++++|++|++++|.+++..+..|..+++|++|+|++|.+++
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDN------------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred             hcccCCCCCEEECCCCcccccChh------------HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence            899999999999999999988887            79999999999999999998888999999999999999999999


Q ss_pred             hhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082          450 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH  508 (619)
Q Consensus       450 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~  508 (619)
                      ..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|. +.++.+|.
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l  421 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL  421 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence            989999999999999999999999888788899999999999999999996 55555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.9e-41  Score=361.61  Aligned_cols=388  Identities=19%  Similarity=0.206  Sum_probs=326.8

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      +++|++|+|++|. +....+..|+++++|++|+|++|. ++...+.+|.++++|++|++++| .++......++++++|+
T Consensus        51 l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~  127 (570)
T 2z63_A           51 FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLK  127 (570)
T ss_dssp             CSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCC
T ss_pred             CCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccccc-ccccCCCcccccccccc
Confidence            5689999999997 666666778899999999999987 77666677889999999999998 56655555588899999


Q ss_pred             EEEccCCCCChh-HHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCC----CEEEccCCccCchh--------------
Q 007082          144 KLWLSETGLTAD-GIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL----EYLDLWGSQVSNRG--------------  204 (619)
Q Consensus       144 ~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L----~~L~l~~n~i~~~~--------------  204 (619)
                      +|++++|.+++. .+..|+++++|++|++++|.+.+..+..++.+++|    ++|++++|.+.+..              
T Consensus       128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l  207 (570)
T 2z63_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL  207 (570)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred             EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence            999999988763 36778899999999999999887766667666666    67777776554332              


Q ss_pred             -------------------------------------------------------------------hHhhcCCCCCCEE
Q 007082          205 -------------------------------------------------------------------AAVLKMFPRLSFL  217 (619)
Q Consensus       205 -------------------------------------------------------------------~~~~~~~~~L~~L  217 (619)
                                                                                         +..+..+++|+.|
T Consensus       208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L  287 (570)
T 2z63_A          208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF  287 (570)
T ss_dssp             ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred             ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence                                                                               2334556889999


Q ss_pred             ecCCCCCCCCC----CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcch
Q 007082          218 NLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR  293 (619)
Q Consensus       218 ~l~~n~l~~l~----~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  293 (619)
                      ++++|.+..++    .+ +|++|++++|.+..+|.  ..+++|+.|++++|......+.   ..+++|+.|++++|.++.
T Consensus       288 ~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~  361 (570)
T 2z63_A          288 SLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSF  361 (570)
T ss_dssp             EEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBE
T ss_pred             EecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCc
Confidence            99999888765    45 99999999999998876  4789999999999988765543   578999999999999876


Q ss_pred             h----hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHH
Q 007082          294 F----CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS  369 (619)
Q Consensus       294 ~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  369 (619)
                      .    ..+..+++|++|++++|.+.+.... +..+ ++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+.
T Consensus       362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  439 (570)
T 2z63_A          362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  439 (570)
T ss_dssp             EEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETC-TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             cccccccccccCccCEEECCCCcccccccc-cccc-CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence            5    5678899999999999998875544 4455 89999999999988765533447799999999999999998888


Q ss_pred             HhhCCCCCcEEEccCCccC-cchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC
Q 007082          370 YMSMMPSLKFIDISNTDIK-GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  448 (619)
Q Consensus       370 ~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  448 (619)
                      .+..+++|++|++++|.++ +.+|.            .+..+++|++|++++|++++..|..|..+++|++|++++|+++
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence            8999999999999999997 56776            7899999999999999999888999999999999999999999


Q ss_pred             chhHHhhcCCCCCCEEEcCCCccCch
Q 007082          449 DVSLHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       449 ~~~~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      +.++..|..+++|+.|++++|++++.
T Consensus       508 ~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          508 SVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCHHHhhcccCCcEEEecCCcccCC
Confidence            99888899999999999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.7e-40  Score=362.93  Aligned_cols=416  Identities=18%  Similarity=0.186  Sum_probs=285.5

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      .+++++|+|++|. +....+..|+++++|++|+|++|. ++...+.+|.++++|++|+|++| .++......|+++++|+
T Consensus        24 ~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           24 PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             CTTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCS
T ss_pred             CCCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCC
Confidence            3689999999998 666666679999999999999987 77777778899999999999999 67766666799999999


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhc--CCCCCCEEecCC
Q 007082          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLK--MFPRLSFLNLAW  221 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~  221 (619)
                      +|++++|.+++..+..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.  .+++|+.|++++
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            999999999888777899999999999999999988888889999999999999999988877665  568999999999


Q ss_pred             CCCCCCCC--------------------------------CCCCcEEEcCCccccccccccC-CC--CCccEEeccCccc
Q 007082          222 TGVTKLPN--------------------------------ISSLECLNLSNCTIDSILEGNE-NK--APLAKISLAGTTF  266 (619)
Q Consensus       222 n~l~~l~~--------------------------------l~~L~~L~l~~~~l~~l~~~~~-~~--~~L~~L~l~~~~~  266 (619)
                      |.+..++.                                .++|++|++++|.+..+++..+ .+  ++|++|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            98875431                                2578888888888886654433 44  4599999999999


Q ss_pred             cchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCc---------------------------------CC
Q 007082          267 INEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS---------------------------------SS  311 (619)
Q Consensus       267 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~---------------------------------~n  311 (619)
                      .+.++. .+..+++|++|++++|.+.+.  ..+..+++|++|+++                                 +|
T Consensus       261 ~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n  339 (680)
T 1ziw_A          261 NVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN  339 (680)
T ss_dssp             CEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred             CccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence            877643 356789999999999988665  344555555555554                                 44


Q ss_pred             CCChhHHHHHHhcCCCCcEEEccCCCCCC--chHHHHHh-cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC
Q 007082          312 MIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAG-HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  388 (619)
Q Consensus       312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~  388 (619)
                      .+++..+..+..+ ++|++|++++|.+..  .....+.. ..++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus       340 ~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  418 (680)
T 1ziw_A          340 DIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG  418 (680)
T ss_dssp             CBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred             ccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence            4444333333333 444444444443211  10000000 0134555555555666655666667777777777777776


Q ss_pred             cchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC--------------------------CcccccCCCCCCEEec
Q 007082          389 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA--------------------------TLFPLSTFKELIHLSL  442 (619)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------------------~~~~~~~l~~L~~L~L  442 (619)
                      +.++..           .|.++++|++|++++|++.+.                          .|..|..+++|+.|++
T Consensus       419 ~~~~~~-----------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          419 QELTGQ-----------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             EECCSG-----------GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             cccCcc-----------cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            554421           455555555555555554433                          3444555555555555


Q ss_pred             CCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc--------cCCCCCCCcEEEcCCCcc
Q 007082          443 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG--------SFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       443 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~l~l~~n~~  495 (619)
                      ++|+++++.+..|..+++|++|++++|++++....        .+..+++|+.|++++|.+
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence            55555555555555555555555555555543211        134445555555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.2e-40  Score=361.45  Aligned_cols=385  Identities=15%  Similarity=0.153  Sum_probs=312.6

Q ss_pred             CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeC-CCCCCCChhhH-----------------------------------
Q 007082           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDL-SRCVKVTDAGM-----------------------------------  133 (619)
Q Consensus        90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L-~~~~~l~~~~~-----------------------------------  133 (619)
                      .+++.|+|+++. +....+.+|+++++|++|+| ++| .+.+..+                                   
T Consensus       323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CCEEEEECccCC-CCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            589999999987 77677788999999999999 665 3222100                                   


Q ss_pred             -----hhh-----------cCCCCCcEEEccC--CCCChhHHHHhhcCCCCCEEEcCCCCCCh-----------------
Q 007082          134 -----KHL-----------LSISTLEKLWLSE--TGLTADGIALLSSLQNLSVLDLGGLPVTD-----------------  178 (619)
Q Consensus       134 -----~~l-----------~~l~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------  178 (619)
                           ..+           .....++.+.+..  |.+++ .|..|+++++|++|+|++|.+.+                 
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                 000           0112233333332  55666 46679999999999999999998                 


Q ss_pred             hHHHHhh--cCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC-CCC--C-----------CCCCCCcEEEcCCcc
Q 007082          179 LVLRSLQ--VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG-VTK--L-----------PNISSLECLNLSNCT  242 (619)
Q Consensus       179 ~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~--l-----------~~l~~L~~L~l~~~~  242 (619)
                      .+|..++  ++++|++|++++|.+.+..|..|.++++|+.|++++|. ++.  +           ..+++|+.|++++|.
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            3778877  99999999999999999999999999999999999998 764  2           245699999999999


Q ss_pred             cccccc--ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCC-CCEEeCcCCCCChhHH
Q 007082          243 IDSILE--GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKA-LEHLDLSSSMIGDDSV  318 (619)
Q Consensus       243 l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~-L~~L~l~~n~l~~~~~  318 (619)
                      +..+|.  .+..+++|+.|++++|.+..++   .+..+++|+.|++++|.+..+ ..+..+++ |++|++++|.++. .+
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp  635 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IP  635 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CC
T ss_pred             CCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cc
Confidence            999998  8889999999999999999666   567899999999999999866 46888898 9999999999984 33


Q ss_pred             HHHHhc-CCCCcEEEccCCCCCCchHHHH--Hh--cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhc
Q 007082          319 EMVACV-GANLRNLNLSNTRFSSAGVGIL--AG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQ  393 (619)
Q Consensus       319 ~~~~~~-~~~L~~L~L~~n~l~~~~~~~~--~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  393 (619)
                      ..+... .++|+.|++++|++.+..+...  .+  .+++|+.|++++|.++..+...+..+++|++|+|++|+++...+.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence            333322 1349999999999987533110  01  245899999999999987777777999999999999999844333


Q ss_pred             cccchhhhhhHHhhc-------cCCcCCEEEccCCCCCCCCccccc--CCCCCCEEecCCCCCCchhHHhhcCCCCCCEE
Q 007082          394 VGAETDLVLSLTALQ-------NLNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLTNL  464 (619)
Q Consensus       394 ~~~~~~~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  464 (619)
                                  .+.       ++++|++|+|++|+++ .+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus       716 ------------~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          716 ------------SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             ------------SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             ------------HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence                        222       3449999999999999 6788886  89999999999999999 57788899999999


Q ss_pred             EcCC------CccCchhhccCCCCCCCcEEEcCCCcc
Q 007082          465 SIRD------AVLTNSGLGSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       465 ~L~~------n~l~~~~~~~~~~~~~L~~l~l~~n~~  495 (619)
                      +|++      |++.+..|..+..+++|+.|++++|++
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            9976      888888999999999999999999998

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=375.63  Aligned_cols=420  Identities=18%  Similarity=0.159  Sum_probs=301.3

Q ss_pred             cEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEc
Q 007082           68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWL  147 (619)
Q Consensus        68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L  147 (619)
                      +..|.++++ ++. +|.   -.++|++|+|++|. ++...+.+|.++++|++|+|++|.......+..|.++++|++|+|
T Consensus         7 ~~~dcs~~~-L~~-vP~---lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L   80 (844)
T 3j0a_A            7 RIAFYRFCN-LTQ-VPQ---VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL   80 (844)
T ss_dssp             EEEEESCCC-SSC-CCS---SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred             eEEEccCCC-CCC-CCC---CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence            467777776 322 232   45799999999987 777767789999999999999996555555788999999999999


Q ss_pred             cCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHH--hhcCCCCCEEEccCCccCchhh-HhhcCCCCCCEEecCCCCC
Q 007082          148 SETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRS--LQVLTKLEYLDLWGSQVSNRGA-AVLKMFPRLSFLNLAWTGV  224 (619)
Q Consensus       148 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l  224 (619)
                      ++|.+.+..+..|+++++|++|+|++|.+.+..+..  |.++++|++|++++|.+.+..+ ..|.++++|++|++++|.+
T Consensus        81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            999999988889999999999999999998865554  8899999999999999987655 5799999999999999998


Q ss_pred             CCCC-----CC--CCCcEEEcCCccccc-cccccCCCCC------ccEEeccCccccchhHHH-----------------
Q 007082          225 TKLP-----NI--SSLECLNLSNCTIDS-ILEGNENKAP------LAKISLAGTTFINEREAF-----------------  273 (619)
Q Consensus       225 ~~l~-----~l--~~L~~L~l~~~~l~~-l~~~~~~~~~------L~~L~l~~~~~~~~~~~~-----------------  273 (619)
                      +.+.     .+  ++|+.|++++|.+.. .+..+..+++      |+.|++++|.+....+..                 
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            7543     23  678888888887764 3333334433      788888877554321110                 


Q ss_pred             ------------------hhh--ccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEE
Q 007082          274 ------------------LYI--ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  331 (619)
Q Consensus       274 ------------------~~~--~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  331 (619)
                                        .+.  ..++|+.|++++|.+...  ..+..+++|+.|++++|.+++..+..+..+ ++|++|
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L  319 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVL  319 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC-SSCCEE
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC-CCCCEE
Confidence                              011  125788888888887765  456778888888888888877766666665 788888


Q ss_pred             EccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchh------------------c
Q 007082          332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ------------------Q  393 (619)
Q Consensus       332 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~------------------~  393 (619)
                      ++++|.+++..+..+ +.+++|++|++++|.+....+..|..+++|++|++++|.+++...                  .
T Consensus       320 ~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~  398 (844)
T 3j0a_A          320 NLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK  398 (844)
T ss_dssp             EEESCCCSCCCSCSC-SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC
T ss_pred             ECCCCCCCccCHHHh-cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc
Confidence            888888777655444 567888888888888877766667778888888888877664311                  0


Q ss_pred             ccc-------c---hhhhhhHHhhccCCcCCEEEccCCCCCCCCc------------------------------ccccC
Q 007082          394 VGA-------E---TDLVLSLTALQNLNHLERLNLEQTQVSDATL------------------------------FPLST  433 (619)
Q Consensus       394 ~~~-------~---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------------~~~~~  433 (619)
                      ...       .   ...+.....+..+++|++|+|++|++++..+                              ..|..
T Consensus       399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  478 (844)
T 3j0a_A          399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG  478 (844)
T ss_dssp             CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred             cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC
Confidence            000       0   0000112234567777777777777764322                              23455


Q ss_pred             CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      +++|+.|+|++|.+++.++..|..+++|+.|+|++|++++..+..+.  ++|+.|++++|.+..
T Consensus       479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA  540 (844)
T ss_dssp             BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred             cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence            56666666666666666666677777777777777777766555544  677777777776644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.9e-38  Score=338.03  Aligned_cols=404  Identities=17%  Similarity=0.164  Sum_probs=269.6

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      |+.....|.+++. ++ .+|..  -.++|++|+|++|. ++...+.+|.++++|++|++++| .++...+..|+++++|+
T Consensus         4 C~~~~~c~~~~~~-l~-~ip~~--~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            4 CDASGVCDGRSRS-FT-SIPSG--LTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             ECTTSEEECTTSC-CS-SCCSC--CCTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred             CCCCceEECCCCc-cc-ccccc--CCCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCC
Confidence            3344456777765 32 22322  23799999999998 77766677899999999999999 77877778899999999


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh-HHHHhhcCCCCCEEEccCCc-cCchhhHhhcCCCCCCEEecCC
Q 007082          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQ-VSNRGAAVLKMFPRLSFLNLAW  221 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~  221 (619)
                      +|++++|.+++..+..|+.+++|++|++++|.+.+. .+..+.++++|++|++++|. +....+..|..+++|++|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            999999999999888899999999999999998864 45678999999999999998 5555557899999999999999


Q ss_pred             CCCCC-----CCCCCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchh--HHHhhhccCCCcEEeccCCCcch
Q 007082          222 TGVTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINER--EAFLYIETSLLSFLDVSNSSLSR  293 (619)
Q Consensus       222 n~l~~-----l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~  293 (619)
                      |.++.     +..+++|++|++++|.+..++..+. .+++|+.|++++|.+.+.+  +......+++|+.|++++|.+++
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred             CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence            99874     4578899999999999988887765 7899999999999988753  11122356788888888887754


Q ss_pred             h------hhhhcCCCCCEEeCcCCCCCh------------------------------hH-----HHHHHhcCCCCcEEE
Q 007082          294 F------CFLTQMKALEHLDLSSSMIGD------------------------------DS-----VEMVACVGANLRNLN  332 (619)
Q Consensus       294 ~------~~~~~~~~L~~L~l~~n~l~~------------------------------~~-----~~~~~~~~~~L~~L~  332 (619)
                      .      ..+..+++|+.+++++|.+.+                              ..     ...+.. .++|+.|+
T Consensus       238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~-~~~L~~L~  316 (549)
T 2z81_A          238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKRIT  316 (549)
T ss_dssp             HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH-STTCCEEE
T ss_pred             hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh-cccceEEE
Confidence            3      122333444444444433211                              00     001111 15566666


Q ss_pred             ccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH---hhCCCCCcEEEccCCccCcchh--ccccchhhhhhHHhh
Q 007082          333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY---MSMMPSLKFIDISNTDIKGFIQ--QVGAETDLVLSLTAL  407 (619)
Q Consensus       333 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~L~L~~n~~~~~~~--~~~~~~~~~~~~~~~  407 (619)
                      +++|++...+. .+++.+++|++|++++|.+++..+..   ++.+++|++|++++|++++..+  .            .+
T Consensus       317 l~~n~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------~~  383 (549)
T 2z81_A          317 VENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE------------IL  383 (549)
T ss_dssp             EESSCCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH------------HG
T ss_pred             eccCccccCCH-HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh------------hh
Confidence            66666654432 23244666666666666666554322   4456666666666666655432  2            35


Q ss_pred             ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcE
Q 007082          408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL  487 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  487 (619)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|.++++... +  .++|+.|++++|++++..    ..+++|+.
T Consensus       384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~  455 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC-I--PQTLEVLDVSNNNLDSFS----LFLPRLQE  455 (549)
T ss_dssp             GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT-S--CTTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred             hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch-h--cCCceEEECCCCChhhhc----ccCChhcE
Confidence            56666666666666665 3455555556666666666655543211 1  134444444444444321    23344444


Q ss_pred             EEcCCCcc
Q 007082          488 LDLHGGWL  495 (619)
Q Consensus       488 l~l~~n~~  495 (619)
                      |++++|.+
T Consensus       456 L~Ls~N~l  463 (549)
T 2z81_A          456 LYISRNKL  463 (549)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcc
Confidence            44444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.2e-39  Score=341.76  Aligned_cols=404  Identities=16%  Similarity=0.134  Sum_probs=324.2

Q ss_pred             HHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCC
Q 007082           24 VQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRV  103 (619)
Q Consensus        24 ~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  103 (619)
                      ++.+++++..+..+++....                   ..++|++|+|++|. +.+..+..|+++++|++|+|++|+ +
T Consensus        23 L~~L~Ls~n~i~~~~~~~~~-------------------~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l   81 (520)
T 2z7x_B           23 TTILNISQNYISELWTSDIL-------------------SLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK-L   81 (520)
T ss_dssp             CSEEECCSSCCCCCCHHHHT-------------------TCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSC-C
T ss_pred             ccEEECCCCcccccChhhcc-------------------ccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCc-e
Confidence            45566677777777643221                   15689999999998 777778889999999999999997 6


Q ss_pred             ChHHHHHhhCCCCCCEEeCCCCCCCCh-hhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCC--CEEEcCCCCC--Ch
Q 007082          104 TSSALWALTGMTCLKELDLSRCVKVTD-AGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNL--SVLDLGGLPV--TD  178 (619)
Q Consensus       104 ~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~L~~n~~--~~  178 (619)
                      +....  . .+++|++|++++| .++. ..+..++++++|++|++++|.+++.   .+..+++|  ++|++++|.+  .+
T Consensus        82 ~~lp~--~-~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           82 VKISC--H-PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             CEEEC--C-CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             eecCc--c-ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccc
Confidence            64322  2 7899999999999 5555 3457899999999999999999873   47778888  9999999988  55


Q ss_pred             hHHHHhhc--------------------------CCCCCEEEccCCc-------cCchhhHhhcCCCCCCEEecCCCCCC
Q 007082          179 LVLRSLQV--------------------------LTKLEYLDLWGSQ-------VSNRGAAVLKMFPRLSFLNLAWTGVT  225 (619)
Q Consensus       179 ~~~~~~~~--------------------------l~~L~~L~l~~n~-------i~~~~~~~~~~~~~L~~L~l~~n~l~  225 (619)
                      ..|..+..                          +++|+.|++++|.       +.+..+ .+..+++|+.|++++|.+.
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred             cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence            55555554                          5677777777765       444444 6778888888888877665


Q ss_pred             CC-----C---CCCCCcEEEcCCcccc-cccccc-----CCCCCccEEeccCccccchhHHHh--hhccCCCcEEeccCC
Q 007082          226 KL-----P---NISSLECLNLSNCTID-SILEGN-----ENKAPLAKISLAGTTFINEREAFL--YIETSLLSFLDVSNS  289 (619)
Q Consensus       226 ~l-----~---~l~~L~~L~l~~~~l~-~l~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~n  289 (619)
                      .-     .   ..++|++|++++|.+. .+|..+     ..+++|+.+++++|.+ .++....  .....+|+.|++++|
T Consensus       234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n  312 (520)
T 2z7x_B          234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGT  312 (520)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred             HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCC
Confidence            31     1   2458999999999998 788888     7889999999999988 5552211  112367999999999


Q ss_pred             CcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCch--HHHHHhcCCCCcEEEccCCCCCh-H
Q 007082          290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGILAGHLPNLEILSLSGTQIDD-Y  366 (619)
Q Consensus       290 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~l~~n~l~~-~  366 (619)
                      .+........+++|++|++++|.+++..+..+..+ ++|++|++++|++++..  +..+ +.+++|++|++++|.+++ .
T Consensus       313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCC-SSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCCG
T ss_pred             ccccccchhhCCcccEEEeECCccChhhhhhhccC-CCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCccc
Confidence            99877655789999999999999998777777666 99999999999999842  3444 779999999999999998 5


Q ss_pred             HHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC
Q 007082          367 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS  446 (619)
Q Consensus       367 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  446 (619)
                      +...+..+++|++|++++|++++..+.            .+.  ++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus       391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          391 KKGDCSWTKSLLSLNMSSNILTDTIFR------------CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ  455 (520)
T ss_dssp             GGCSCCCCTTCCEEECCSSCCCGGGGG------------SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             ccchhccCccCCEEECcCCCCCcchhh------------hhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence            544578899999999999999887665            332  79999999999999 677777799999999999999


Q ss_pred             CCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082          447 LTDVSLHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       447 l~~~~~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      ++.+++..+..+++|++|++++|+++..
T Consensus       456 l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          456 LKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccCHHHhccCCcccEEECcCCCCccc
Confidence            9987666699999999999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.1e-35  Score=312.79  Aligned_cols=342  Identities=22%  Similarity=0.316  Sum_probs=194.1

Q ss_pred             CCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCE
Q 007082           89 FRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSV  168 (619)
Q Consensus        89 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~  168 (619)
                      +++|+.|++.++. +..  +..+..+++|++|++++| .+++..+  +.++++|++|++++|.+.+..+  ++.+++|++
T Consensus        45 l~~l~~L~l~~~~-i~~--l~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           45 LDQVTTLQADRLG-IKS--IDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHTCCEEECCSSC-CCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccccEEecCCCC-Ccc--CcchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            3456666666554 332  123555666666666666 3443322  5566666666666666665543  666666666


Q ss_pred             EEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC---CCCCCCCCcEEEcCCccccc
Q 007082          169 LDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT---KLPNISSLECLNLSNCTIDS  245 (619)
Q Consensus       169 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~---~l~~l~~L~~L~l~~~~l~~  245 (619)
                      |++++|.+.+..+  +.++++|++|++++|.+.+..  .+..+++|+.|+++ +.+.   .+..+++|++|++++|.+..
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSD  191 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCC
Confidence            6666666665532  666666666666666665432  35566666666664 2222   23355566666666666555


Q ss_pred             cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcC
Q 007082          246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG  325 (619)
Q Consensus       246 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  325 (619)
                      ++. +..+++|++|++++|.+.+.++   +..+++|+.|++++|.++..+.+..+++|++|++++|.+++..+  +..+ 
T Consensus       192 ~~~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-  264 (466)
T 1o6v_A          192 ISV-LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGL-  264 (466)
T ss_dssp             CGG-GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTC-
T ss_pred             Chh-hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcC-
Confidence            432 4456666666666666655443   23456666666666666555555666666666666666655433  3333 


Q ss_pred             CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      ++|++|++++|.+++..+   +..+++|++|++++|.+++..+  +..+++|++|++++|++++..+             
T Consensus       265 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------------  326 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-------------  326 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-------------
T ss_pred             CCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-------------
Confidence            566666666666655433   2445666666666666555433  4555666666666666554432             


Q ss_pred             hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  473 (619)
                       +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence             34555666666666655543  345555666666666666655544  5555666666666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-35  Score=311.18  Aligned_cols=342  Identities=20%  Similarity=0.297  Sum_probs=299.0

Q ss_pred             CCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEE
Q 007082          114 MTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYL  193 (619)
Q Consensus       114 ~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L  193 (619)
                      +++|++|+++++ .+..  ...+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        45 l~~l~~L~l~~~-~i~~--l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRL-GIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCC-CCcc--CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            468999999998 4544  3357789999999999999998765  8999999999999999988765  8999999999


Q ss_pred             EccCCccCchhhHhhcCCCCCCEEecCCCCCCCC---CCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchh
Q 007082          194 DLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER  270 (619)
Q Consensus       194 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l---~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~  270 (619)
                      ++++|.+.+..+  +..+++|++|++++|.+..+   ..+++|++|+++ +.+..+++ +..+++|+.|++++|.+...+
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  193 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDIS  193 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCCh
Confidence            999999987654  89999999999999988764   478999999996 45555544 678999999999999998875


Q ss_pred             HHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcC
Q 007082          271 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL  350 (619)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  350 (619)
                      .   +..+++|++|++++|.+.....+..+++|++|++++|.+++..  .+..+ ++|+.|++++|.+++..+   +..+
T Consensus       194 ~---l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~---~~~l  264 (466)
T 1o6v_A          194 V---LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TNLTDLDLANNQISNLAP---LSGL  264 (466)
T ss_dssp             G---GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCCCGG---GTTC
T ss_pred             h---hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhhcC-CCCCEEECCCCccccchh---hhcC
Confidence            3   5688999999999999998877889999999999999998752  45555 999999999999998765   3679


Q ss_pred             CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082          351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  430 (619)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  430 (619)
                      ++|++|++++|.+++..+  +..+++|++|++++|++.+..              .+..+++|++|++++|++++..+  
T Consensus       265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--------------~~~~l~~L~~L~L~~n~l~~~~~--  326 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--------------PISNLKNLTYLTLYFNNISDISP--  326 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------------GGGGCTTCSEEECCSSCCSCCGG--
T ss_pred             CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch--------------hhcCCCCCCEEECcCCcCCCchh--
Confidence            999999999999998765  889999999999999998754              36789999999999999998765  


Q ss_pred             ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++..
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            78899999999999999986  478899999999999999999876  7889999999999999854

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=5.8e-35  Score=317.71  Aligned_cols=452  Identities=14%  Similarity=0.102  Sum_probs=318.7

Q ss_pred             HHHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCC-------------
Q 007082           13 CIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVD-------------   79 (619)
Q Consensus        13 c~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~-------------   79 (619)
                      .+..||++|..+..+......+.......+..              .+. ..+++++|+|+++..+.             
T Consensus        36 ~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~--------------~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~  100 (592)
T 3ogk_B           36 SASLVCRRWFKIDSETREHVTMALCYTATPDR--------------LSR-RFPNLRSLKLKGKPRAAMFNLIPENWGGYV  100 (592)
T ss_dssp             HHTTSCHHHHHHHHHHCCEEEESCGGGSCHHH--------------HHH-HCTTCSEEEEECSCGGGGGTCSCTTSCCBC
T ss_pred             HHHHHhHHHHHhhhccccEEEEeeccccChHH--------------HHH-hCCCCeEEEecCCcchhhcccccccccccc
Confidence            44568899988866654443332221111121              111 24679999998754211             


Q ss_pred             h-HHHHHHhcCCCccEEEcCCCCCCChHHHHHhhC-CCC-CCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCCCCChh
Q 007082           80 A-EWMAYLGAFRYLRSLNVADCRRVTSSALWALTG-MTC-LKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTAD  155 (619)
Q Consensus        80 ~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~-L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~~~~~~  155 (619)
                      . .+...+..+++|++|+|++|. +++..+..++. +++ |++|+|++|..++......+. ++++|++|++++|.+++.
T Consensus       101 ~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~  179 (592)
T 3ogk_B          101 TPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK  179 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred             hHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc
Confidence            1 234445589999999999996 88888877775 455 999999999655555554443 799999999999987554


Q ss_pred             ----HHHHhhcCCCCCEEEcCCCCCC----hhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCC---
Q 007082          156 ----GIALLSSLQNLSVLDLGGLPVT----DLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV---  224 (619)
Q Consensus       156 ----~~~~~~~l~~L~~L~L~~n~~~----~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l---  224 (619)
                          ....+..+++|++|++++|.+.    +..+..+.++++|++|++++|.+.+ .+..+..+++|+.|+++....   
T Consensus       180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~  258 (592)
T 3ogk_B          180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG  258 (592)
T ss_dssp             CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT
T ss_pred             chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc
Confidence                3445678999999999999987    4455666789999999999998876 567899999999999984322   


Q ss_pred             -----CCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hh
Q 007082          225 -----TKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CF  296 (619)
Q Consensus       225 -----~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~  296 (619)
                           ..+..+++|+.|+++++....++..+..+++|++|++++|.+...........+++|+.|+++ +.+...   ..
T Consensus       259 ~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~  337 (592)
T 3ogk_B          259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL  337 (592)
T ss_dssp             CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH
T ss_pred             hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH
Confidence                 245678899999998877777877777888999999999886654443335678888888888 444332   34


Q ss_pred             hhcCCCCCEEeCc-----------CCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEcc----CC
Q 007082          297 LTQMKALEHLDLS-----------SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS----GT  361 (619)
Q Consensus       297 ~~~~~~L~~L~l~-----------~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~----~n  361 (619)
                      ...+++|++|+++           .+.+++.....+...+++|++|+++.+.+++..+..+...+++|+.|+++    .|
T Consensus       338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred             HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence            4677888888888           46777776666555558888888888888887777775568888888886    56


Q ss_pred             CCChH-----HHHHhhCCCCCcEEEccCCc--cCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC-CcccccC
Q 007082          362 QIDDY-----AISYMSMMPSLKFIDISNTD--IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLST  433 (619)
Q Consensus       362 ~l~~~-----~~~~~~~~~~L~~L~L~~n~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~  433 (619)
                      .+++.     .+..+..+++|++|++++|.  +++.....           ....+++|++|++++|++++. .+..+..
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~-----------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  486 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY-----------IGQYSPNVRWMLLGYVGESDEGLMEFSRG  486 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH-----------HHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH-----------HHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence            67652     44456678888888887544  44443330           223478888888888887753 3334467


Q ss_pred             CCCCCEEecCCCCCCchh-HHhhcCCCCCCEEEcCCCccCchhhccCC-CCCCCcEEEcCCC
Q 007082          434 FKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGSFK-PPRSLKLLDLHGG  493 (619)
Q Consensus       434 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~l~l~~n  493 (619)
                      +++|++|+|++|.+++.. +..+..+++|++|+|++|++++.....+. .++.+....+..+
T Consensus       487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            788888888888876653 33445688888888888888776444443 3466655555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.8e-36  Score=315.37  Aligned_cols=313  Identities=19%  Similarity=0.186  Sum_probs=219.6

Q ss_pred             CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcC
Q 007082          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLS  239 (619)
Q Consensus       165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~  239 (619)
                      +++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++.++     .+++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            3444444444444444444444444444444444444444444444444444444444333222     23444444444


Q ss_pred             Ccccccccc-ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHH
Q 007082          240 NCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSV  318 (619)
Q Consensus       240 ~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~  318 (619)
                      +|.+..+++ .+..+++|++|++++|.+..+.+                       ..+..+++|++|++++|.+++...
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----------------------RAFSGLNSLEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----------------------TSSTTCTTCCEEEEESCCCSSCCH
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeCh-----------------------hhccCCCCCCEEECCCCcCcccCh
Confidence            444443322 22234444444444443332221                       245667778888888888777766


Q ss_pred             HHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccch
Q 007082          319 EMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAET  398 (619)
Q Consensus       319 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~  398 (619)
                      ..+..+ ++|+.|++++|.+.+.....+ ..+++|++|++++|.+.+..+.......+|++|++++|++++..+.     
T Consensus       170 ~~l~~l-~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----  242 (477)
T 2id5_A          170 EALSHL-HGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL-----  242 (477)
T ss_dssp             HHHTTC-TTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH-----
T ss_pred             hHhccc-CCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH-----
Confidence            667666 888888888888877655444 6688999999999876665555555566999999999999876655     


Q ss_pred             hhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhcc
Q 007082          399 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS  478 (619)
Q Consensus       399 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  478 (619)
                             .+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++++..+..
T Consensus       243 -------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          243 -------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             -------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             -------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence                   7899999999999999999888888999999999999999999999999999999999999999999988888


Q ss_pred             CCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082          479 FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  514 (619)
Q Consensus       479 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  514 (619)
                      |..+++|+.|++++|+|.|+|.+.|+.++.......
T Consensus       316 ~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~  351 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN  351 (477)
T ss_dssp             BSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCT
T ss_pred             cCCCcccCEEEccCCCccCccchHhHHhhhhccccC
Confidence            899999999999999999999999998876554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.9e-34  Score=303.68  Aligned_cols=392  Identities=22%  Similarity=0.281  Sum_probs=265.4

Q ss_pred             CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHH----HHHhhCCCCCCEEeCCCCCCCChhhHhhhc-CC
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSA----LWALTGMTCLKELDLSRCVKVTDAGMKHLL-SI  139 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~-~l  139 (619)
                      +++++|||+++...+..+...+..+++|++|++++|. ++...    ...+..+++|++|++++| .+++..+..+. .+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence            4688999988883334455558888899999999887 66543    334667788888888888 56665555444 34


Q ss_pred             C----CCcEEEccCCCCCh----hHHHHhhcCCCCCEEEcCCCCCChhHHHHhhc-----CCCCCEEEccCCccCchh--
Q 007082          140 S----TLEKLWLSETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV-----LTKLEYLDLWGSQVSNRG--  204 (619)
Q Consensus       140 ~----~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~i~~~~--  204 (619)
                      +    +|++|++++|.+++    ..+..+..+++|++|++++|.+.+..+..+..     .++|++|++++|.+++..  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            4    68888888888774    33566777788888888888776655544432     456777777777766533  


Q ss_pred             --hHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccc-----cccccCCCCCccEEeccCccccchhHHHhhhc
Q 007082          205 --AAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFINEREAFLYIE  277 (619)
Q Consensus       205 --~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  277 (619)
                        +..+..+++                   |++|++++|.+..     +...+.                        ..
T Consensus       161 ~l~~~l~~~~~-------------------L~~L~L~~n~i~~~~~~~l~~~l~------------------------~~  197 (461)
T 1z7x_W          161 PLASVLRAKPD-------------------FKELTVSNNDINEAGVRVLCQGLK------------------------DS  197 (461)
T ss_dssp             HHHHHHHHCTT-------------------CCEEECCSSBCHHHHHHHHHHHHH------------------------HS
T ss_pred             HHHHHHhhCCC-------------------CCEEECcCCCcchHHHHHHHHHHh------------------------cC
Confidence              333333333                   3333333333331     111111                        12


Q ss_pred             cCCCcEEeccCCCcchh------hhhhcCCCCCEEeCcCCCCChhHHHHHHh----cCCCCcEEEccCCCCCCchHH---
Q 007082          278 TSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVAC----VGANLRNLNLSNTRFSSAGVG---  344 (619)
Q Consensus       278 ~~~L~~L~l~~n~l~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~---  344 (619)
                      .++|++|++++|.++..      ..+..+++|++|++++|.+++.....+..    .+++|++|++++|.+++....   
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  277 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC  277 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence            33555555555555441      34567788888888888887765544432    237888888888888875422   


Q ss_pred             HHHhcCCCCcEEEccCCCCChHHHHHhhC-----CCCCcEEEccCCccCcc----hhccccchhhhhhHHhhccCCcCCE
Q 007082          345 ILAGHLPNLEILSLSGTQIDDYAISYMSM-----MPSLKFIDISNTDIKGF----IQQVGAETDLVLSLTALQNLNHLER  415 (619)
Q Consensus       345 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~~~~~----~~~~~~~~~~~~~~~~~~~l~~L~~  415 (619)
                      ..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++.    ++.            .+..+++|++
T Consensus       278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~------------~l~~~~~L~~  345 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS------------VLAQNRFLLE  345 (461)
T ss_dssp             HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH------------HHHHCSSCCE
T ss_pred             HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH------------HHhhCCCccE
Confidence            22245888999999999888766555542     36899999999988765    333            5778899999


Q ss_pred             EEccCCCCCCCCcccccC-----CCCCCEEecCCCCCCc----hhHHhhcCCCCCCEEEcCCCccCchhhccCC-----C
Q 007082          416 LNLEQTQVSDATLFPLST-----FKELIHLSLRNASLTD----VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK-----P  481 (619)
Q Consensus       416 L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~  481 (619)
                      |++++|.+++..+..+..     .++|++|++++|.+++    ..+..+..+++|++|++++|++++.....+.     .
T Consensus       346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~  425 (461)
T 1z7x_W          346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP  425 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred             EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence            999999887665555443     6799999999999996    6777888899999999999999876443322     2


Q ss_pred             CCCCcEEEcCCCccCCH--HHHHHHHHhCCCeee
Q 007082          482 PRSLKLLDLHGGWLLTE--DAILQFCKMHPRIEV  513 (619)
Q Consensus       482 ~~~L~~l~l~~n~~~~~--~~~~~~~~~~~~~~~  513 (619)
                      ..+|+.|++.++.+...  ..+..+.+..|.+++
T Consensus       426 ~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i  459 (461)
T 1z7x_W          426 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  459 (461)
T ss_dssp             TCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             CcchhheeecccccCHHHHHHHHHHhccCCCcEe
Confidence            35799999999988653  345566677777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.8e-35  Score=318.78  Aligned_cols=401  Identities=15%  Similarity=0.141  Sum_probs=309.5

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      |...+.+|++++. ++. +|..+  .++|++|++++|. ++...+.+|.++++|++|+|++| .++...+..|.++++|+
T Consensus        30 ~~~~~~l~ls~~~-L~~-ip~~~--~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~  103 (562)
T 3a79_B           30 NELESMVDYSNRN-LTH-VPKDL--PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLE  103 (562)
T ss_dssp             ---CCEEECTTSC-CCS-CCTTS--CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred             cCCCcEEEcCCCC-Ccc-CCCCC--CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCC
Confidence            3456899999998 443 44332  3799999999988 77766678999999999999999 78887788899999999


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChh-HHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCC--CEEecC
Q 007082          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDL-VLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRL--SFLNLA  220 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L--~~L~l~  220 (619)
                      +|++++|.++..+..   .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++.   .+..+++|  +.|+++
T Consensus       104 ~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          104 YLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             EEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            999999999865433   789999999999999874 357899999999999999998864   34455555  999999


Q ss_pred             CCCC--CCCC--CCCCCc----EEEcCCccccc-ccc-ccCCCCCccEEeccCccc-----cchhHHHhhhccCCCcEEe
Q 007082          221 WTGV--TKLP--NISSLE----CLNLSNCTIDS-ILE-GNENKAPLAKISLAGTTF-----INEREAFLYIETSLLSFLD  285 (619)
Q Consensus       221 ~n~l--~~l~--~l~~L~----~L~l~~~~l~~-l~~-~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~~L~  285 (619)
                      +|.+  +...  .+..+.    .+++++|.+.. ++. .+..+++|+.+++++|..     .+...  .+..++.|+.++
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~  255 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVT  255 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEE
Confidence            9988  4322  222222    45677777663 332 233788999999999852     22222  345789999999


Q ss_pred             ccCCCcchh-----hhhhcCCCCCEEeCcCCCCChhHH-------------------------------HHHHhcCCCCc
Q 007082          286 VSNSSLSRF-----CFLTQMKALEHLDLSSSMIGDDSV-------------------------------EMVACVGANLR  329 (619)
Q Consensus       286 l~~n~l~~~-----~~~~~~~~L~~L~l~~n~l~~~~~-------------------------------~~~~~~~~~L~  329 (619)
                      +.++.+...     ......++|++|++++|.+++..+                               ..+... .+|+
T Consensus       256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~-~~L~  334 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIK  334 (562)
T ss_dssp             EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT-CCCS
T ss_pred             ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc-Ccce
Confidence            988877653     223344689999999887764222                               112122 5688


Q ss_pred             EEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc--hhccccchhhhhhHHhh
Q 007082          330 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF--IQQVGAETDLVLSLTAL  407 (619)
Q Consensus       330 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~~~~~~~~~~~  407 (619)
                      +|++++|.+.....   .+.+++|++|++++|.+++..+..+..+++|++|++++|++++.  .|.            .+
T Consensus       335 ~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------~~  399 (562)
T 3a79_B          335 MLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL------------MT  399 (562)
T ss_dssp             EEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH------------TT
T ss_pred             EEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh------------hh
Confidence            99999888866431   14689999999999999998888899999999999999999874  344            68


Q ss_pred             ccCCcCCEEEccCCCCCCCCc-ccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCc
Q 007082          408 QNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK  486 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  486 (619)
                      ..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+..+.  ++|++|++++|+++.. |..+..+++|+
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~  476 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQ  476 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCS
T ss_pred             cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCC
Confidence            899999999999999998455 4588899999999999999987665543  7999999999999954 55555899999


Q ss_pred             EEEcCCCccCC
Q 007082          487 LLDLHGGWLLT  497 (619)
Q Consensus       487 ~l~l~~n~~~~  497 (619)
                      .|++++|.+..
T Consensus       477 ~L~L~~N~l~~  487 (562)
T 3a79_B          477 ELNVASNQLKS  487 (562)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCCCCC
Confidence            99999999853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.4e-35  Score=307.14  Aligned_cols=371  Identities=18%  Similarity=0.136  Sum_probs=270.2

Q ss_pred             CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCC-------------CCEEeCCCCCCCChh
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTC-------------LKELDLSRCVKVTDA  131 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~-------------L~~L~L~~~~~l~~~  131 (619)
                      +++++|++++|. + +.+|..++++++|++|++++|. +....+.+++.+++             +++|++++| .++..
T Consensus        11 ~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~l   86 (454)
T 1jl5_A           11 TFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL   86 (454)
T ss_dssp             -------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCC
T ss_pred             ccchhhhcccCc-h-hhCChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccC
Confidence            579999999998 5 7889999999999999999876 44444445555554             699999999 45542


Q ss_pred             hHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCC
Q 007082          132 GMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF  211 (619)
Q Consensus       132 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~  211 (619)
                      . .   ..++|++|++++|.+++.+    ...++|++|++++|.+.+..  .  ..++|++|++++|.+++ .| .|..+
T Consensus        87 p-~---~~~~L~~L~l~~n~l~~lp----~~~~~L~~L~l~~n~l~~l~--~--~~~~L~~L~L~~n~l~~-lp-~~~~l  152 (454)
T 1jl5_A           87 P-E---LPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNNLKALS--D--LPPLLEYLGVSNNQLEK-LP-ELQNS  152 (454)
T ss_dssp             C-S---CCTTCSEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC--S--CCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             C-C---CcCCCCEEEccCCcCCccc----cccCCCcEEECCCCccCccc--C--CCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence            1 1   2479999999999998743    23589999999999987642  1  12699999999999987 55 59999


Q ss_pred             CCCCEEecCCCCCCCCCC-CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC
Q 007082          212 PRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (619)
Q Consensus       212 ~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  290 (619)
                      ++|++|++++|.++.++. .++|++|++++|.+..+| .+..+++|+.|++++|.+.+++..     .++|++|++++|.
T Consensus       153 ~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~  226 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNI  226 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCc
Confidence            999999999999998874 568999999999999987 577999999999999999886542     3689999999999


Q ss_pred             cchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082          291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  370 (619)
Q Consensus       291 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  370 (619)
                      ++.++.+..+++|++|++++|.+++...     ..++|+.|++++|++++..     ..+++|++|++++|.+++..   
T Consensus       227 l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~-----~~~~~L~~L~ls~N~l~~l~---  293 (454)
T 1jl5_A          227 LEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLS---  293 (454)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEES---
T ss_pred             CCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccC-----cccCcCCEEECcCCccCccc---
Confidence            9988778999999999999999886331     2389999999999998853     23689999999999998742   


Q ss_pred             hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                       ...++|++|++++|++++.. .               ..++|++|++++|++++ +|..   +++|++|++++|+++++
T Consensus       294 -~~~~~L~~L~l~~N~l~~i~-~---------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l  352 (454)
T 1jl5_A          294 -ELPPNLYYLNASSNEIRSLC-D---------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV  352 (454)
T ss_dssp             -CCCTTCCEEECCSSCCSEEC-C---------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred             -CcCCcCCEEECcCCcCCccc-C---------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc
Confidence             12379999999999997632 1               12589999999999986 4543   58999999999999975


Q ss_pred             hHHhhcCCCCCCEEEcCCCccCc--hhhccCCCC-------------CCCcEEEcCCCccCC
Q 007082          451 SLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPP-------------RSLKLLDLHGGWLLT  497 (619)
Q Consensus       451 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~-------------~~L~~l~l~~n~~~~  497 (619)
                      +.    .+++|++|++++|++++  ..|..+..+             ++|+.|++++|++.+
T Consensus       353 p~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          353 PE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             CC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             cc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            43    47899999999999998  667777666             789999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.5e-33  Score=281.61  Aligned_cols=306  Identities=20%  Similarity=0.291  Sum_probs=218.7

Q ss_pred             cCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCE
Q 007082          137 LSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF  216 (619)
Q Consensus       137 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~  216 (619)
                      ..+++|++|+++++.+....  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            34667777777777766542  36667777777777777766543  66777777777777766653  23555555555


Q ss_pred             EecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhh
Q 007082          217 LNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCF  296 (619)
Q Consensus       217 L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  296 (619)
                      |++++|.+.                   .++. +..+++|+.|++++|......+.  +..+++|++|++++|.+.....
T Consensus       115 L~l~~n~i~-------------------~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~  172 (347)
T 4fmz_A          115 LYLNEDNIS-------------------DISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP  172 (347)
T ss_dssp             EECTTSCCC-------------------CCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             EECcCCccc-------------------Cchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh
Confidence            555555544                   3333 33455555555555533332222  3456666666666666666655


Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      +..+++|++|++++|.+.+...  +... ++|+.+++++|.+++..+   +..+++|++|++++|.+++..+  +..+++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~~l~~  244 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP--LANLSQ  244 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             hccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc--hhcCCC
Confidence            6777788888888877776544  4444 788888888888877654   3568889999999888887655  778899


Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      |++|++++|.+++.  .            .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+..+.
T Consensus       245 L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          245 LTWLEIGTNQISDI--N------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             CCEEECCSSCCCCC--G------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             CCEEECCCCccCCC--h------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence            99999999988764  2            578889999999999988864  4578889999999999999998888899


Q ss_pred             CCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccC
Q 007082          457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL  496 (619)
Q Consensus       457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~  496 (619)
                      .+++|++|++++|++++..+  +..+++|+.+++++|++.
T Consensus       309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99999999999999988766  677899999999999873

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=100.00  E-value=8.2e-34  Score=308.88  Aligned_cols=462  Identities=19%  Similarity=0.222  Sum_probs=319.9

Q ss_pred             HHHHHHhcchhHHHHHHhccccccCchHHHHHHHHHHHHhhccChhhHHHhcCCccEEeccCCCCCCh------------
Q 007082           13 CIEAACQSGESVQKWRRQRRSLERLPAHLADSLLRHLIRRRLIFPSLLEVFKHNAEAIELRGENSVDA------------   80 (619)
Q Consensus        13 c~~~~~~~~~~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~~p~~~~~~~~~l~~L~Ls~~~~~~~------------   80 (619)
                      .+..||++|+.+..+.+....+.......+...++               .+++++.|+++++..+..            
T Consensus        29 ~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~   93 (594)
T 2p1m_B           29 SVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR---------------RFPKVRSVELKGKPHFADFNLVPDGWGGYV   93 (594)
T ss_dssp             HHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHH---------------HCTTCCEEEEECSCGGGGGTCSCTTSCCBC
T ss_pred             HHHHHHHHHHHhhhhhceEEeeccccccCHHHHHh---------------hCCCceEEeccCCCchhhcccccccccchh
Confidence            34567888877755554444443333222221111               135788888888652211            


Q ss_pred             --HHHHHHhcCCCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc-CCCCCcEEEccCCCCChhH
Q 007082           81 --EWMAYLGAFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL-SISTLEKLWLSETGLTADG  156 (619)
Q Consensus        81 --~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~  156 (619)
                        .+...+..+++|++|+|++|. +++..+..+. .+++|++|+|++|..+++..+..+. ++++|++|++++|.+++..
T Consensus        94 ~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~  172 (594)
T 2p1m_B           94 YPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS  172 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred             hHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence              123345578888888888887 7777777776 6888888888888655555454444 7888888888888765543


Q ss_pred             HHHhh----cCCCCCEEEcCCCC--CChhHHHH-hhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC
Q 007082          157 IALLS----SLQNLSVLDLGGLP--VTDLVLRS-LQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN  229 (619)
Q Consensus       157 ~~~~~----~l~~L~~L~L~~n~--~~~~~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~  229 (619)
                      ...+.    .+++|++|++++|.  +....... +.++++|++|++++|.-.+..+..+..+++|+.|++..+..     
T Consensus       173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-----  247 (594)
T 2p1m_B          173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA-----  247 (594)
T ss_dssp             GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC-----
T ss_pred             hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC-----
Confidence            33332    56788888888875  44333333 35678888888888732223666777777888877665432     


Q ss_pred             CCCCcEEEcCCccccccccccCCCCCccEE-eccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCE
Q 007082          230 ISSLECLNLSNCTIDSILEGNENKAPLAKI-SLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEH  305 (619)
Q Consensus       230 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~  305 (619)
                             ++..+.+..++..+..+++|+.+ .+.+.....++..  ...+++|++|++++|.++..   ..+..+++|++
T Consensus       248 -------~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~  318 (594)
T 2p1m_B          248 -------EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR  318 (594)
T ss_dssp             -------CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG--HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred             -------ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH--HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence                   23445556666666677888877 4444333233322  23578888888888887654   34568899999


Q ss_pred             EeCcCCCCChhHHHHHHhcCCCCcEEEc---------cCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh-CCC
Q 007082          306 LDLSSSMIGDDSVEMVACVGANLRNLNL---------SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMP  375 (619)
Q Consensus       306 L~l~~n~l~~~~~~~~~~~~~~L~~L~L---------~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~  375 (619)
                      |++++| +++.....+...+++|++|++         ..+.+++.....+...+++|++|.+..|.+++.....+. .++
T Consensus       319 L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~  397 (594)
T 2p1m_B          319 LWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP  397 (594)
T ss_dssp             EEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT
T ss_pred             EeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC
Confidence            999988 666666666655589999998         335777777777766799999999988999988777665 689


Q ss_pred             CCcEEEcc--C----CccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC-CCCCCEEecCCCCCC
Q 007082          376 SLKFIDIS--N----TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-FKELIHLSLRNASLT  448 (619)
Q Consensus       376 ~L~~L~L~--~----n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~  448 (619)
                      +|++|+++  +    +.+++.....     .+.  ..+..+++|++|++++ .+++..+..+.. +++|+.|+|++|.++
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~~~~-----~~~--~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~  469 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEPLDI-----GFG--AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS  469 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCCTHH-----HHH--HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred             CcceeEeecccCCCcccccCCchhh-----HHH--HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence            99999999  3    4454221110     000  0367889999999987 676655556655 899999999999998


Q ss_pred             chhHHhh-cCCCCCCEEEcCCCccCchhhcc-CCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082          449 DVSLHQL-SSLSKLTNLSIRDAVLTNSGLGS-FKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  514 (619)
Q Consensus       449 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  514 (619)
                      +..+..+ ..+++|++|+|++|.+++..+.. ...+++|+.|++++|+. ...++..+...+|.+.+.
T Consensus       470 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~  536 (594)
T 2p1m_B          470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVE  536 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEE
Confidence            8766665 67999999999999997765543 34479999999999998 777788888888888664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.9e-34  Score=291.34  Aligned_cols=312  Identities=18%  Similarity=0.248  Sum_probs=228.9

Q ss_pred             CCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEe
Q 007082          139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN  218 (619)
Q Consensus       139 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  218 (619)
                      +++++.|+++++.++..+...|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            46777777777777666666677777777777777777766666777777777777777777776666677766666666


Q ss_pred             cCCCCCCCCC-----CCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082          219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (619)
Q Consensus       219 l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  292 (619)
                      +++|.++.++     .+++|++|++++|.+..+++. +..+++|++|++++|.+...                       
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------  180 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------------------  180 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----------------------
Confidence            6666665433     345566666666666555433 33555555555555554433                       


Q ss_pred             hhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh
Q 007082          293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS  372 (619)
Q Consensus       293 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  372 (619)
                         .+..+++|++|++++|.+++..      ..+.|++|++++|.+.....    ..+++|+.|++++|.+++.  ..+.
T Consensus       181 ---~~~~l~~L~~L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          181 ---DLSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             ---CGGGCTTCSEEECCSSCCSEEE------CCSSCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred             ---ccccccccceeecccccccccC------CCCcceEEECCCCeeeeccc----cccccccEEECCCCCCccc--HHHc
Confidence               2344566677777766665432      11678888888887776532    2357899999999998875  4678


Q ss_pred             CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082          373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL  452 (619)
Q Consensus       373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  452 (619)
                      .+++|++|++++|.+++..+.            .|..+++|++|++++|++++ ++..+..+++|++|+|++|+++++ |
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~  311 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-E  311 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-G
T ss_pred             CCCCccEEECCCCcCCCcChh------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-C
Confidence            899999999999999988777            78999999999999999985 466677889999999999999975 4


Q ss_pred             HhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHH
Q 007082          453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  505 (619)
Q Consensus       453 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  505 (619)
                      ..+..+++|++|++++|++++..   +..+++|+.|++++|+|.|+|...++.
T Consensus       312 ~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~  361 (390)
T 3o6n_A          312 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFR  361 (390)
T ss_dssp             GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred             ccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHHHH
Confidence            56778899999999999998763   566799999999999999987655444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.6e-34  Score=313.56  Aligned_cols=390  Identities=19%  Similarity=0.200  Sum_probs=291.9

Q ss_pred             CccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEE
Q 007082           91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLD  170 (619)
Q Consensus        91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~  170 (619)
                      ++++|+|++|+ ++.....+|.++++|++|+|++| .++...+.+|.++++|++|+|++|.++..++..|.++++|++|+
T Consensus        53 ~~~~LdLs~N~-i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCC-CCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            79999999988 88777778999999999999999 78877778899999999999999999998888999999999999


Q ss_pred             cCCCCCChhHHHHhhcCCCCCEEEccCCccCch-hhHhhcCCCCCCEEecCCCCCCCCC--------CC-CCCcEEEcCC
Q 007082          171 LGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR-GAAVLKMFPRLSFLNLAWTGVTKLP--------NI-SSLECLNLSN  240 (619)
Q Consensus       171 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~l~--------~l-~~L~~L~l~~  240 (619)
                      +++|.+.+..+..|+++++|++|++++|.+... .|..+..+++|++|++++|.++.+.        .+ .....++++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            999999988777899999999999999999764 5778899999999999999998654        12 2345677888


Q ss_pred             ccccccccccCCCCCccEEeccCccccchhHH------------------------------------------------
Q 007082          241 CTIDSILEGNENKAPLAKISLAGTTFINEREA------------------------------------------------  272 (619)
Q Consensus       241 ~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~------------------------------------------------  272 (619)
                      |.+..++...+....++.+++.+|........                                                
T Consensus       211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            87776665555444444444444322110000                                                


Q ss_pred             -------------------------------HhhhccCCCcEEeccCCCcchh---------------------hhhhcC
Q 007082          273 -------------------------------FLYIETSLLSFLDVSNSSLSRF---------------------CFLTQM  300 (619)
Q Consensus       273 -------------------------------~~~~~~~~L~~L~l~~n~l~~~---------------------~~~~~~  300 (619)
                                                     ..+.....++.|++.+|.+...                     .....+
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l  370 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  370 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred             hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence                                           0011223444555554443222                     112234


Q ss_pred             CCCCEEeCcCCCCChh--HHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH-HHHhhCCCCC
Q 007082          301 KALEHLDLSSSMIGDD--SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSL  377 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L  377 (619)
                      ++|+.+++++|.+...  .+...... .+|+.+++..+....... .+ ..+++|+.+++.++...... ...+..++++
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~~~~~~~-~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNGVITMSS-NF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCSEEEECS-CC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             cccccchhhccccccccccccchhhh-hhhhhhhccccccccccc-cc-cccccccchhhhhcccccccccccccccccc
Confidence            5566666666554321  12222233 566666666655443322 11 34677777777776544332 2346678888


Q ss_pred             cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCC-CCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV-SDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      +.++++.|.+.+..+.            .+..+++|++|++++|.+ .+..|..|..+++|++|+|++|++++++|..|.
T Consensus       448 ~~l~ls~n~l~~~~~~------------~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~  515 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNG------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  515 (635)
T ss_dssp             CEEECTTSCCEECCTT------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cccccccccccccccc------------ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence            8899999888877777            788999999999999964 445778899999999999999999999999999


Q ss_pred             CCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      ++++|++|+|++|++++..+..|..+++|+.|++++|.+..
T Consensus       516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence            99999999999999999988899999999999999999854

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.7e-33  Score=294.33  Aligned_cols=324  Identities=20%  Similarity=0.166  Sum_probs=211.8

Q ss_pred             CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh-hHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEe
Q 007082          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD-LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN  218 (619)
Q Consensus       140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  218 (619)
                      ++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            344444444444444433444444444444444444432 2223344444444444444444444444444444444444


Q ss_pred             cCCCCCCC-------CCCCCCCcEEEcCCccccccc-cc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCC
Q 007082          219 LAWTGVTK-------LPNISSLECLNLSNCTIDSIL-EG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS  289 (619)
Q Consensus       219 l~~n~l~~-------l~~l~~L~~L~l~~~~l~~l~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n  289 (619)
                      +++|.+++       +..+++|++|++++|.+..+. .. +..+++|++|++++|.+.+..+.. +..+           
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l-----------  177 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNF-----------  177 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGG-----------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhcc-----------
Confidence            44444432       334455555555555555442 22 335566666666666555433221 0011           


Q ss_pred             CcchhhhhhcCCCCCEEeCcCCCCChhHHH--------HHHhcCCCCcEEEccCCCCCCchHHHHHhc--CCCCcEEEcc
Q 007082          290 SLSRFCFLTQMKALEHLDLSSSMIGDDSVE--------MVACVGANLRNLNLSNTRFSSAGVGILAGH--LPNLEILSLS  359 (619)
Q Consensus       290 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~L~~L~l~  359 (619)
                               ...+|+.|++++|.+.+....        .+... ++|++|++++|++++..+..+...  .++|+.|+++
T Consensus       178 ---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          178 ---------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             ---------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ---------ccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence                     013455555555554432211        11222 789999999999999877766442  3899999999


Q ss_pred             CCCCChHH----------HHHhh--CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082          360 GTQIDDYA----------ISYMS--MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  427 (619)
Q Consensus       360 ~n~l~~~~----------~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  427 (619)
                      +|...+..          ...+.  ..++|++|++++|.+.+..+.            .+..+++|++|++++|.+++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS------------VFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT------------TTTTCTTCCEEECTTSCCCEEC
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchh------------hcccCCCCCEEECCCCcccccC
Confidence            98644321          11122  247999999999999998888            7999999999999999999888


Q ss_pred             cccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       428 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      +..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence            8999999999999999999999989999999999999999999999989999999999999999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.9e-33  Score=280.23  Aligned_cols=307  Identities=23%  Similarity=0.296  Sum_probs=232.8

Q ss_pred             hhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCC
Q 007082          111 LTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKL  190 (619)
Q Consensus       111 l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  190 (619)
                      +..+++|++|++++| .+..  ...+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~-~i~~--~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGE-KVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCC-cccc--chhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            346789999999999 4544  2457889999999999999988655  89999999999999998875  468999999


Q ss_pred             CEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchh
Q 007082          191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER  270 (619)
Q Consensus       191 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~  270 (619)
                      ++|++++|.+.+..+  +..+++|+.|++++|...                   ..++.+..+++|++|++++|.+...+
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~-------------------~~~~~~~~l~~L~~L~l~~~~~~~~~  171 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNL-------------------SDLSPLSNMTGLNYLTVTESKVKDVT  171 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTC-------------------CCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCc-------------------ccccchhhCCCCcEEEecCCCcCCch
Confidence            999999999987544  777777777777766322                   11122334445555555555544443


Q ss_pred             HHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcC
Q 007082          271 EAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHL  350 (619)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  350 (619)
                      .   +..+++|+.|++++|.+.....+..+++|+.+++++|.+++..+  +... ++|++|++++|++++..+   +..+
T Consensus       172 ~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l~~~~~---~~~l  242 (347)
T 4fmz_A          172 P---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITDLSP---LANL  242 (347)
T ss_dssp             G---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG---GTTC
T ss_pred             h---hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCccCCCcc---hhcC
Confidence            3   33566666666666666666556777888888888887776544  4444 788888888888877654   3668


Q ss_pred             CCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc
Q 007082          351 PNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP  430 (619)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  430 (619)
                      ++|++|++++|.+++.  ..+..+++|++|++++|++++.  .            .+..+++|++|++++|.+++..+..
T Consensus       243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S------------VLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h------------hhcCCCCCCEEECcCCcCCCcChhH
Confidence            8888999988888875  3577888999999999988765  2            5778889999999999988888888


Q ss_pred             ccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          431 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       431 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|+++
T Consensus       307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8889999999999999988766  788899999999999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.5e-34  Score=301.16  Aligned_cols=394  Identities=19%  Similarity=0.180  Sum_probs=139.8

Q ss_pred             hHHHHHHhccccccCchHHHHHHHHHHHHhhcc-------ChhhHHH------------hcCCccEEeccCCCCCChHHH
Q 007082           23 SVQKWRRQRRSLERLPAHLADSLLRHLIRRRLI-------FPSLLEV------------FKHNAEAIELRGENSVDAEWM   83 (619)
Q Consensus        23 ~~~~~~~~~~~l~~lp~~l~~~~l~~L~~~~~~-------~p~~~~~------------~~~~l~~L~Ls~~~~~~~~~~   83 (619)
                      .++...++...++.+|+.+..  ++.|...+..       .|..+..            ...++++|++++|. +.+ ++
T Consensus        12 ~L~~L~l~~n~l~~iP~~i~~--L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~-lp   87 (454)
T 1jl5_A           12 FLQEPLRHSSNLTEMPVEAEN--VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSS-LP   87 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC-CC
T ss_pred             cchhhhcccCchhhCChhHhc--ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-ccc-CC
Confidence            356677777778888877765  3322222111       1211110            01234555555554 221 11


Q ss_pred             HHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCC-CCCcEEEccCCCCChhHHHHhhc
Q 007082           84 AYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI-STLEKLWLSETGLTADGIALLSS  162 (619)
Q Consensus        84 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~  162 (619)
                      .   -.++|++|++++|. ++.. +   ...++|++|++++| .++.     +... ++|++|++++|.+++.+  .|+.
T Consensus        88 ~---~~~~L~~L~l~~n~-l~~l-p---~~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~~lp--~~~~  151 (454)
T 1jl5_A           88 E---LPPHLESLVASCNS-LTEL-P---ELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEKLP--ELQN  151 (454)
T ss_dssp             S---CCTTCSEEECCSSC-CSSC-C---CCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSSCC--CCTT
T ss_pred             C---CcCCCCEEEccCCc-CCcc-c---cccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCCCCc--ccCC
Confidence            1   12455555555554 3321 1   12245555555555 3322     1111 45555555555555432  3555


Q ss_pred             CCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC-CCCCcEEEcCCc
Q 007082          163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNC  241 (619)
Q Consensus       163 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~  241 (619)
                      +++|++|++++|.+.+. |.   ..++|++|++++|.+++. | .+..+++|+.|++++|.+++++. .++|++|++++|
T Consensus       152 l~~L~~L~l~~N~l~~l-p~---~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n  225 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN  225 (454)
T ss_dssp             CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCcCccc-CC---CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence            55555555555555442 11   123555555555555542 2 35555555555555555555442 234555555555


Q ss_pred             cccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHH
Q 007082          242 TIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMV  321 (619)
Q Consensus       242 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  321 (619)
                      .+..+|. +..+++|++|++++|.+.+++.     ..++|+.|++++|.+++++.  .+++|++|++++|.+++..    
T Consensus       226 ~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~--~~~~L~~L~ls~N~l~~l~----  293 (454)
T 1jl5_A          226 ILEELPE-LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGLS----  293 (454)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEES----
T ss_pred             cCCcccc-cCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc--ccCcCCEEECcCCccCccc----
Confidence            5555542 4455555555555555554332     12445555555554444321  1244455555544444311    


Q ss_pred             HhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhh
Q 007082          322 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV  401 (619)
Q Consensus       322 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~  401 (619)
                       ...++|+.|++++|++++..     ...++|++|++++|++++.+ .   .+++|++|++++|++++. |.        
T Consensus       294 -~~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~lp-~---~~~~L~~L~L~~N~l~~l-p~--------  354 (454)
T 1jl5_A          294 -ELPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIELP-A---LPPRLERLIASFNHLAEV-PE--------  354 (454)
T ss_dssp             -CCCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCC-CC--------
T ss_pred             -CcCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccccc-c---cCCcCCEEECCCCccccc-cc--------
Confidence             01134444444444444321     11124444444444444321 1   134444444444444321 11        


Q ss_pred             hhHHhhccCCcCCEEEccCCCCCC--CCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch--hhc
Q 007082          402 LSLTALQNLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS--GLG  477 (619)
Q Consensus       402 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~  477 (619)
                             .+++|++|++++|++++  .+|..+.      .|  +.|.+.+.+|.   .+++|+.|++++|++++.  +| 
T Consensus       355 -------~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP-  415 (454)
T 1jl5_A          355 -------LPQNLKQLHVEYNPLREFPDIPESVE------DL--RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIP-  415 (454)
T ss_dssp             -------CCTTCCEEECCSSCCSSCCCCCTTCC------EE--ECCC---------------------------------
T ss_pred             -------hhhhccEEECCCCCCCcCCCChHHHH------hh--hhccccccccc---ccCcCCEEECCCCcCCccccch-
Confidence                   13344444444444443  2222221      11  12223332222   138899999999999873  33 


Q ss_pred             cCCCCCCCcEEEcCCCccCC
Q 007082          478 SFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       478 ~~~~~~~L~~l~l~~n~~~~  497 (619)
                           ++++.+++.+|.+.|
T Consensus       416 -----~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          416 -----ESVEDLRMNSERVVD  430 (454)
T ss_dssp             --------------------
T ss_pred             -----hhHhheeCcCcccCC
Confidence                 457778888888755

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.1e-34  Score=295.90  Aligned_cols=345  Identities=19%  Similarity=0.184  Sum_probs=173.0

Q ss_pred             cCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCC
Q 007082           88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS  167 (619)
Q Consensus        88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  167 (619)
                      ++++|++|++++|. ++..  ..+..+++|++|++++| .++..   .++.+++|++|++++|.+++..   ++.+++|+
T Consensus        40 ~l~~L~~L~Ls~n~-l~~~--~~l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~  109 (457)
T 3bz5_A           40 QLATLTSLDCHNSS-ITDM--TGIEKLTGLTKLICTSN-NITTL---DLSQNTNLTYLACDSNKLTNLD---VTPLTKLT  109 (457)
T ss_dssp             HHTTCCEEECCSSC-CCCC--TTGGGCTTCSEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred             HcCCCCEEEccCCC-cccC--hhhcccCCCCEEEccCC-cCCeE---ccccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence            34444444444443 3322  13444444444444444 23322   1344444555555554444431   44444555


Q ss_pred             EEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCC-CCCC--CCCCCCCcEEEcCCcccc
Q 007082          168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWT-GVTK--LPNISSLECLNLSNCTID  244 (619)
Q Consensus       168 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~--l~~l~~L~~L~l~~~~l~  244 (619)
                      +|++++|.+.+. +  ++.+++|++|++++|.+++.   .+..+++|+.|++++| .+..  +..+++|++|++++|.++
T Consensus       110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc
Confidence            555555544443 1  44445555555555544442   1444445555555544 2221  224455555555555555


Q ss_pred             ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhc
Q 007082          245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV  324 (619)
Q Consensus       245 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  324 (619)
                      .++  +..+++|+.|++++|.+.+.+    +..+++|+.|++++|.+++++ +..+++|++|++++|.+++..+.   .+
T Consensus       184 ~l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~---~l  253 (457)
T 3bz5_A          184 ELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVS---TL  253 (457)
T ss_dssp             CCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCT---TC
T ss_pred             eec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHH---HC
Confidence            543  445555555555555555441    334555555555555555544 45555666666666655554321   11


Q ss_pred             CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082          325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL  404 (619)
Q Consensus       325 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~  404 (619)
                       ++|+.|++++|               +|+.|++++|.+.+..|  ++.+++|+.|++++|...+.+|...   ..+..+
T Consensus       254 -~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L~~L  312 (457)
T 3bz5_A          254 -SKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGITEL  312 (457)
T ss_dssp             -TTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCCSCC
T ss_pred             -CCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---CcceEe
Confidence             55555555433               33444455554443332  3445566666666665554444310   001111


Q ss_pred             HhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082          405 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS  484 (619)
Q Consensus       405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  484 (619)
                       .+.++++|++|++++|++++.   .+..+++|+.|++++|+++++        +.|..|++++|.++|.     ..+..
T Consensus       313 -~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~  375 (457)
T 3bz5_A          313 -DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTIT  375 (457)
T ss_dssp             -CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEE
T ss_pred             -chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeee
Confidence             244556777788888777763   267777788888887777762        3455556666666654     12344


Q ss_pred             CcEEEcCCCccC
Q 007082          485 LKLLDLHGGWLL  496 (619)
Q Consensus       485 L~~l~l~~n~~~  496 (619)
                      +..+++++|.+.
T Consensus       376 l~~l~l~~N~l~  387 (457)
T 3bz5_A          376 MPKETLTNNSLT  387 (457)
T ss_dssp             CCCBCCBTTBEE
T ss_pred             cCccccccCcEE
Confidence            556667776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.4e-34  Score=291.54  Aligned_cols=331  Identities=18%  Similarity=0.168  Sum_probs=229.7

Q ss_pred             cCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCC
Q 007082           88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS  167 (619)
Q Consensus        88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  167 (619)
                      .++++++|+++++. ++......+..+++|++|++++| .++...+..+..+++|++|++++|.+++..+..|+.+++|+
T Consensus        43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            35677788887765 55555555677778888888877 56665556677777888888888777776666777777888


Q ss_pred             EEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC--CCCCCcEEEcCCccccc
Q 007082          168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDS  245 (619)
Q Consensus       168 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~l~~L~~L~l~~~~l~~  245 (619)
                      +|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.++.++  .+++|+.|++++|.+..
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence            8888887777665555677778888888887777766666777777777777776665432  34444444444444332


Q ss_pred             cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcC
Q 007082          246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG  325 (619)
Q Consensus       246 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  325 (619)
                      ++                                                   ..++|++|++++|.+......    ..
T Consensus       201 ~~---------------------------------------------------~~~~L~~L~l~~n~l~~~~~~----~~  225 (390)
T 3o6n_A          201 LA---------------------------------------------------IPIAVEELDASHNSINVVRGP----VN  225 (390)
T ss_dssp             EE---------------------------------------------------CCSSCSEEECCSSCCCEEECC----CC
T ss_pred             cC---------------------------------------------------CCCcceEEECCCCeeeecccc----cc
Confidence            21                                                   112344444444444332111    11


Q ss_pred             CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      ++|+.|++++|.+++..   .++.+++|++|++++|.+++..+..+..+++|++|++++|++++.. .            
T Consensus       226 ~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~------------  289 (390)
T 3o6n_A          226 VELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-L------------  289 (390)
T ss_dssp             SSCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-C------------
T ss_pred             ccccEEECCCCCCcccH---HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-c------------
Confidence            56777777777776642   2366889999999999998887888888999999999999987753 3            


Q ss_pred             hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  485 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  485 (619)
                      .+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++...   +..+++|+.|++++|++.......+  +..+
T Consensus       290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~--~~~~  363 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL--FRNV  363 (390)
T ss_dssp             SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHH--TTTC
T ss_pred             ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHHHH--HHHH
Confidence            4577899999999999988 55667888899999999999998863   6778999999999999987543332  1233


Q ss_pred             cEEEcCCCccCC
Q 007082          486 KLLDLHGGWLLT  497 (619)
Q Consensus       486 ~~l~l~~n~~~~  497 (619)
                      ....+.+++..|
T Consensus       364 ~~~~~~~~~~~c  375 (390)
T 3o6n_A          364 ARPAVDDADQHC  375 (390)
T ss_dssp             CTTTBCCCCSCC
T ss_pred             HhhcccccCcee
Confidence            333355666555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-33  Score=294.85  Aligned_cols=345  Identities=15%  Similarity=0.157  Sum_probs=279.9

Q ss_pred             cCCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCc
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLE  143 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~  143 (619)
                      .+++++|++++|. +.+. + .++.+++|++|++++|. ++..   .++.+++|++|++++| .++..   .++++++|+
T Consensus        41 l~~L~~L~Ls~n~-l~~~-~-~l~~l~~L~~L~Ls~n~-l~~~---~~~~l~~L~~L~Ls~N-~l~~~---~~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSS-ITDM-T-GIEKLTGLTKLICTSNN-ITTL---DLSQNTNLTYLACDSN-KLTNL---DVTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSC-CCCC-T-TGGGCTTCSEEECCSSC-CSCC---CCTTCTTCSEEECCSS-CCSCC---CCTTCTTCC
T ss_pred             cCCCCEEEccCCC-cccC-h-hhcccCCCCEEEccCCc-CCeE---ccccCCCCCEEECcCC-CCcee---ecCCCCcCC
Confidence            4689999999998 5443 3 68999999999999998 6654   2789999999999999 56654   278999999


Q ss_pred             EEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCC
Q 007082          144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTG  223 (619)
Q Consensus       144 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~  223 (619)
                      +|++++|.+++..   ++.+++|++|++++|.+.+.   .++.+++|++|++++|...+..  .+..+++|+.|++++|.
T Consensus       110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCeec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            9999999998853   88999999999999999885   3889999999999999544443  47889999999999999


Q ss_pred             CCCCC--CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCC
Q 007082          224 VTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK  301 (619)
Q Consensus       224 l~~l~--~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  301 (619)
                      ++.++  .+++|+.|++++|.++.++  +..+++|+.|++++|.+.+++    +..+++|+.|++++|.+++.+ ...++
T Consensus       182 l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~-~~~l~  254 (457)
T 3bz5_A          182 ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD-VSTLS  254 (457)
T ss_dssp             CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCT
T ss_pred             cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC-HHHCC
Confidence            98765  7889999999999999873  678999999999999999965    558899999999999998874 56678


Q ss_pred             CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHH--------HhhC
Q 007082          302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS--------YMSM  373 (619)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~~  373 (619)
                      +|+.|++++|               +|+.|++++|.+.+..+   .+.+++|+.|++++|...+..+.        .+++
T Consensus       255 ~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~  316 (457)
T 3bz5_A          255 KLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ  316 (457)
T ss_dssp             TCCEEECTTC---------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred             CCCEEeccCC---------------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence            8888877654               45566666666555433   14567777777777654332221        1445


Q ss_pred             CCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHH
Q 007082          374 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLH  453 (619)
Q Consensus       374 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  453 (619)
                      +++|++|++++|++++.               .+..+++|+.|++++|++++        ++.|..|++++|.+++.   
T Consensus       317 ~~~L~~L~L~~N~l~~l---------------~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~---  370 (457)
T 3bz5_A          317 NPKLVYLYLNNTELTEL---------------DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE---  370 (457)
T ss_dssp             CTTCCEEECTTCCCSCC---------------CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---
T ss_pred             cccCCEEECCCCccccc---------------ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---
Confidence            68999999999999884               36789999999999999985        35678889999999885   


Q ss_pred             hhcCCCCCCEEEcCCCccCchhhccCC
Q 007082          454 QLSSLSKLTNLSIRDAVLTNSGLGSFK  480 (619)
Q Consensus       454 ~~~~l~~L~~L~L~~n~l~~~~~~~~~  480 (619)
                        ..+..|+.+++++|+++|.+|..+.
T Consensus       371 --~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          371 --GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             --EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             --ceeeecCccccccCcEEEEcChhHh
Confidence              3456788899999999998876553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.4e-33  Score=300.00  Aligned_cols=313  Identities=18%  Similarity=0.252  Sum_probs=228.5

Q ss_pred             CCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEe
Q 007082          139 ISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLN  218 (619)
Q Consensus       139 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  218 (619)
                      +++++.++++++.+...++..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45667777777777666666667777777777777777776666777777777777777777776666666666666666


Q ss_pred             cCCCCCCCCC-----CCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082          219 LAWTGVTKLP-----NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (619)
Q Consensus       219 l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  292 (619)
                      +++|.++.++     .+++|++|++++|.+..+++. +..+++|+.|++++|.+.+.+                      
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------  187 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------------  187 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence            6666655433     345555555655555554432 334555555555555444332                      


Q ss_pred             hhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh
Q 007082          293 RFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS  372 (619)
Q Consensus       293 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  372 (619)
                          +..+++|+.|++++|.+++..      ..++|+.|++++|.+.....    ...++|+.|++++|.+++.  ..+.
T Consensus       188 ----~~~l~~L~~L~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l~  251 (597)
T 3oja_B          188 ----LSLIPSLFHANVSYNLLSTLA------IPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AWLL  251 (597)
T ss_dssp             ----GGGCTTCSEEECCSSCCSEEE------CCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCCC--GGGG
T ss_pred             ----hhhhhhhhhhhcccCcccccc------CCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCCC--hhhc
Confidence                344566777777777666532      11678888888887776533    2256899999999998874  5678


Q ss_pred             CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082          373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL  452 (619)
Q Consensus       373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  452 (619)
                      .+++|++|++++|.+.+..|.            .|..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++++ |
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i-~  317 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-E  317 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC-G
T ss_pred             cCCCCCEEECCCCccCCCCHH------------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc-C
Confidence            899999999999999998887            79999999999999999985 566777899999999999999974 5


Q ss_pred             HhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHH
Q 007082          453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK  506 (619)
Q Consensus       453 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  506 (619)
                      ..+..+++|+.|+|++|.+++..   +..+++|+.|++++|+|.|+|...++..
T Consensus       318 ~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~  368 (597)
T 3oja_B          318 RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRN  368 (597)
T ss_dssp             GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred             cccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHHHHH
Confidence            56788999999999999998763   5667999999999999999986555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.5e-32  Score=285.53  Aligned_cols=370  Identities=23%  Similarity=0.243  Sum_probs=256.3

Q ss_pred             CCccEEEcCCCCCCChHHHHH-hhCCCCCCEEeCCCCCCCChhh----HhhhcCCCCCcEEEccCCCCChhHHHHhh-cC
Q 007082           90 RYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAG----MKHLLSISTLEKLWLSETGLTADGIALLS-SL  163 (619)
Q Consensus        90 ~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l  163 (619)
                      ++|++|+|++|+ +++..... +..+++|++|++++| .+++..    +..+..+++|++|++++|.+.+..+..+. .+
T Consensus         3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            467888888776 66665554 667788888888888 566543    34455677888888888877765554333 34


Q ss_pred             C----CCCEEEcCCCCCCh----hHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcE
Q 007082          164 Q----NLSVLDLGGLPVTD----LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLEC  235 (619)
Q Consensus       164 ~----~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~  235 (619)
                      +    +|++|++++|.+.+    ..+..+..+++|++|++++|.+++..+..+...-              ....++|++
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------~~~~~~L~~  146 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL--------------LDPQCRLEK  146 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH--------------TSTTCCCCE
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH--------------hcCCCcceE
Confidence            4    57788887777774    4466677777777777777777654444332200              001234455


Q ss_pred             EEcCCccccc-----cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhh-----hcCCCC
Q 007082          236 LNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFL-----TQMKAL  303 (619)
Q Consensus       236 L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~-----~~~~~L  303 (619)
                      |++++|.++.     ++..                         +..+++|++|++++|.+...  ..+     ...++|
T Consensus       147 L~L~~n~l~~~~~~~l~~~-------------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L  201 (461)
T 1z7x_W          147 LQLEYCSLSAASCEPLASV-------------------------LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL  201 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHH-------------------------HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred             EECCCCCCCHHHHHHHHHH-------------------------HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc
Confidence            5555554442     2222                         23445566666666655443  112     236799


Q ss_pred             CEEeCcCCCCChhH----HHHHHhcCCCCcEEEccCCCCCCchHHHH----HhcCCCCcEEEccCCCCChH----HHHHh
Q 007082          304 EHLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFSSAGVGIL----AGHLPNLEILSLSGTQIDDY----AISYM  371 (619)
Q Consensus       304 ~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~----~~~~~  371 (619)
                      ++|++++|.+++..    +..+... ++|++|++++|.+++.....+    ...+++|++|++++|.+++.    .+..+
T Consensus       202 ~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  280 (461)
T 1z7x_W          202 EALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL  280 (461)
T ss_dssp             CEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             eEEEccCCCCcHHHHHHHHHHHHhC-CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence            99999999998864    4445555 999999999999988654433    23589999999999999986    45667


Q ss_pred             hCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC----CcccccCCCCCCEEecCCCCC
Q 007082          372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA----TLFPLSTFKELIHLSLRNASL  447 (619)
Q Consensus       372 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l  447 (619)
                      ..+++|++|++++|.+++..+..      +. -......++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       281 ~~~~~L~~L~Ls~n~i~~~~~~~------l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          281 RAKESLKELSLAGNELGDEGARL------LC-ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHH------HH-HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             hhCCCcceEECCCCCCchHHHHH------HH-HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence            77999999999999987554330      00 00112347999999999999875    355566789999999999999


Q ss_pred             CchhHHhhcC-----CCCCCEEEcCCCccCc----hhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082          448 TDVSLHQLSS-----LSKLTNLSIRDAVLTN----SGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  509 (619)
Q Consensus       448 ~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  509 (619)
                      ++..+..+..     .++|++|++++|.+++    ..+..+..+++|+.|++++|++ .+.+...+.+..+
T Consensus       354 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i-~~~~~~~l~~~l~  423 (461)
T 1z7x_W          354 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVR  423 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC-CHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC-CHHHHHHHHHHhc
Confidence            8876665543     6899999999999997    5677777789999999999998 5556666665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=100.00  E-value=7.4e-33  Score=301.15  Aligned_cols=428  Identities=17%  Similarity=0.177  Sum_probs=325.8

Q ss_pred             cEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCC-------------hHHHHHhh-CCCCCCEEeCCCCCCCChhhH
Q 007082           68 EAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVT-------------SSALWALT-GMTCLKELDLSRCVKVTDAGM  133 (619)
Q Consensus        68 ~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-------------~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~  133 (619)
                      ..+.+..+.  .......+.++++|++|+|++|..+.             ...+..+. .+++|++|+|++| .+++..+
T Consensus        53 ~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~  129 (592)
T 3ogk_B           53 EHVTMALCY--TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL  129 (592)
T ss_dssp             CEEEESCGG--GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred             cEEEEeecc--ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH
Confidence            445554432  22345677899999999998765322             12233333 8999999999999 7888888


Q ss_pred             hhhcC-CCC-CcEEEccCCC-CChhHH-HHhhcCCCCCEEEcCCCCCChh----HHHHhhcCCCCCEEEccCCccC----
Q 007082          134 KHLLS-IST-LEKLWLSETG-LTADGI-ALLSSLQNLSVLDLGGLPVTDL----VLRSLQVLTKLEYLDLWGSQVS----  201 (619)
Q Consensus       134 ~~l~~-l~~-L~~L~L~~~~-~~~~~~-~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~----  201 (619)
                      ..+.. +++ |++|++++|. ++.... .....+++|++|+|++|.+.+.    .+..+..+++|++|++++|.++    
T Consensus       130 ~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~  209 (592)
T 3ogk_B          130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP  209 (592)
T ss_dssp             HHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred             HHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence            77775 445 9999999985 443333 3445899999999999987554    4455678999999999999987    


Q ss_pred             chhhHhhcCCCCCCEEecCCCCCCCCC----CCCCCcEEEcCCcccc----ccccccCCCCCccEEeccCccccchhHHH
Q 007082          202 NRGAAVLKMFPRLSFLNLAWTGVTKLP----NISSLECLNLSNCTID----SILEGNENKAPLAKISLAGTTFINEREAF  273 (619)
Q Consensus       202 ~~~~~~~~~~~~L~~L~l~~n~l~~l~----~l~~L~~L~l~~~~l~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  273 (619)
                      +..+..+..+++|+.|++++|.+..++    .+++|++|+++.+...    ..+..+..+++|+.|++.++.....+.. 
T Consensus       210 ~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-  288 (592)
T 3ogk_B          210 KDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-  288 (592)
T ss_dssp             HHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-
T ss_pred             HHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-
Confidence            345566778999999999999887655    6899999999854322    3444556889999999998765555543 


Q ss_pred             hhhccCCCcEEeccCCCcchh---hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccC-----------CCCC
Q 007082          274 LYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-----------TRFS  339 (619)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~  339 (619)
                       +..+++|++|++++|.++..   ..+..+++|++|+++ +.+.+.....+...+++|++|++++           +.++
T Consensus       289 -~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~  366 (592)
T 3ogk_B          289 -FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS  366 (592)
T ss_dssp             -GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred             -HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence             44789999999999997665   346889999999999 5666666666665569999999993           6788


Q ss_pred             CchHHHHHhcCCCCcEEEccCCCCChHHHHHhhC-CCCCcEEEcc----CCccCcc-----hhccccchhhhhhHHhhcc
Q 007082          340 SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDIS----NTDIKGF-----IQQVGAETDLVLSLTALQN  409 (619)
Q Consensus       340 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~L~----~n~~~~~-----~~~~~~~~~~~~~~~~~~~  409 (619)
                      +.....+...+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.     ++.            .+.+
T Consensus       367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------------~~~~  434 (592)
T 3ogk_B          367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------LLIG  434 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------------HHHH
T ss_pred             HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH------------HHHh
Confidence            7777776677999999999999999988877775 9999999997    5667653     222            4678


Q ss_pred             CCcCCEEEccCCC--CCCCCccccc-CCCCCCEEecCCCCCCch-hHHhhcCCCCCCEEEcCCCccCchhhc-cCCCCCC
Q 007082          410 LNHLERLNLEQTQ--VSDATLFPLS-TFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGLG-SFKPPRS  484 (619)
Q Consensus       410 l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~  484 (619)
                      +++|++|++++|.  +++..+..+. .+++|+.|+|++|.+++. .+..+..+++|++|+|++|.+++.... .+..+++
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  514 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS  514 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence            9999999998653  6655555554 489999999999999885 455668899999999999998765433 3456799


Q ss_pred             CcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082          485 LKLLDLHGGWLLTEDAILQFCKMHPRIEVW  514 (619)
Q Consensus       485 L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  514 (619)
                      |+.|++++|++ .+.++..+....|.+.+.
T Consensus       515 L~~L~ls~n~i-t~~~~~~l~~~~p~l~~~  543 (592)
T 3ogk_B          515 LRYLWVQGYRA-SMTGQDLMQMARPYWNIE  543 (592)
T ss_dssp             CCEEEEESCBC-CTTCTTGGGGCCTTEEEE
T ss_pred             cCeeECcCCcC-CHHHHHHHHHhCCCcEEE
Confidence            99999999995 444555555666665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.7e-33  Score=299.44  Aligned_cols=311  Identities=18%  Similarity=0.184  Sum_probs=218.9

Q ss_pred             cCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCC
Q 007082           88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS  167 (619)
Q Consensus        88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  167 (619)
                      .+++++.|++++|. +.......+.++++|++|+|++| .++...+..|+.+++|++|++++|.+++.++..|+.+++|+
T Consensus        49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            35677778887765 55555555677778888888877 56666666777778888888888877777666777788888


Q ss_pred             EEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC--CCCCCcEEEcCCccccc
Q 007082          168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP--NISSLECLNLSNCTIDS  245 (619)
Q Consensus       168 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~l~~L~~L~l~~~~l~~  245 (619)
                      +|+|++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.++.++  .+++|+.|++++|.+..
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence            8888888777666555677788888888888777777777777777777777777666443  34444444444444332


Q ss_pred             cccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcC
Q 007082          246 ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVG  325 (619)
Q Consensus       246 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  325 (619)
                      ++                                                   ..++|+.|++++|.++.....    ..
T Consensus       207 l~---------------------------------------------------~~~~L~~L~ls~n~l~~~~~~----~~  231 (597)
T 3oja_B          207 LA---------------------------------------------------IPIAVEELDASHNSINVVRGP----VN  231 (597)
T ss_dssp             EE---------------------------------------------------CCTTCSEEECCSSCCCEEECS----CC
T ss_pred             cc---------------------------------------------------CCchhheeeccCCcccccccc----cC
Confidence            21                                                   112334444444433322111    01


Q ss_pred             CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      ++|+.|++++|.+++.  . .++.+++|+.|++++|.+++..|..|..+++|++|+|++|.+++. |.            
T Consensus       232 ~~L~~L~L~~n~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~------------  295 (597)
T 3oja_B          232 VELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NL------------  295 (597)
T ss_dssp             SCCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-EC------------
T ss_pred             CCCCEEECCCCCCCCC--h-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cc------------
Confidence            4566666666666664  2 235688888888888888888788888888999999999888775 33            


Q ss_pred             hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchh
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  475 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  475 (619)
                      .+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++..   +..+++|+.|++++|++++..
T Consensus       296 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             ccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence            4567889999999999888 56777788889999999999988763   667888999999999988753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=289.94  Aligned_cols=294  Identities=15%  Similarity=0.166  Sum_probs=170.5

Q ss_pred             CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082          141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA  220 (619)
Q Consensus       141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  220 (619)
                      ++++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            44555555555544444445555555555555555554444455555555555555555554444445555555555555


Q ss_pred             CCCCCC-----CCCCCCCcEEEcCCcccccccc-ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh
Q 007082          221 WTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF  294 (619)
Q Consensus       221 ~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  294 (619)
                      +|.+..     +..+++|++|++++|.+..+++ .+..+++|++|++++|.+..++.. .+..+++|+.|++++|.+...
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEE
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEe
Confidence            555442     2345566666666666665543 344677777777777777665543 233455555555555555444


Q ss_pred             --hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh
Q 007082          295 --CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS  372 (619)
Q Consensus       295 --~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  372 (619)
                        ..+..+++|++|++++|                         ...+..+...+ ...+|++|++++|.+++.++..+.
T Consensus       192 ~~~~~~~l~~L~~L~l~~~-------------------------~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~  245 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHW-------------------------PYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVR  245 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECC-------------------------TTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHT
T ss_pred             ChhhcccCcccceeeCCCC-------------------------ccccccCcccc-cCccccEEECcCCcccccCHHHhc
Confidence              23444455555555544                         33332222221 234666666666666666555666


Q ss_pred             CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082          373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL  452 (619)
Q Consensus       373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  452 (619)
                      .+++|++|++++|++++..+.            .|..+++|++|+|++|++++..+..|..+++|+.|+|++|.++++.+
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          246 HLVYLRFLNLSYNPISTIEGS------------MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             TCTTCCEEECCSSCCCEECTT------------SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             CccccCeeECCCCcCCccChh------------hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence            667777777777776665555            56667777777777777776666677777777777777777777666


Q ss_pred             HhhcCCCCCCEEEcCCCccCc
Q 007082          453 HQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       453 ~~~~~l~~L~~L~L~~n~l~~  473 (619)
                      ..|..+++|+.|+|++|++..
T Consensus       314 ~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          314 SVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             GGBSCGGGCCEEECCSSCEEC
T ss_pred             hHcCCCcccCEEEccCCCccC
Confidence            666777777777777777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=1.8e-29  Score=274.57  Aligned_cols=400  Identities=19%  Similarity=0.176  Sum_probs=222.6

Q ss_pred             cCCccEEeccCCCCCChHHHHHHh-cCCCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhHhhhc----
Q 007082           64 KHNAEAIELRGENSVDAEWMAYLG-AFRYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGMKHLL----  137 (619)
Q Consensus        64 ~~~l~~L~Ls~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~~~l~----  137 (619)
                      +++|++|+|++|. +++..+..+. .+++|++|+|++|..++...+..+. ++++|++|++++|. +++.....+.    
T Consensus       104 ~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence            6789999999998 7777666665 7999999999999667776666655 89999999999994 5544433333    


Q ss_pred             CCCCCcEEEccCCC--CChhHHH-HhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCc-------cCchhhHh
Q 007082          138 SISTLEKLWLSETG--LTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ-------VSNRGAAV  207 (619)
Q Consensus       138 ~l~~L~~L~L~~~~--~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------i~~~~~~~  207 (619)
                      .+++|++|++++|.  +...... .+..+++|++|++++|...+..+..+..+++|++|++..+.       +.+ .+..
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence            67899999999986  5544333 34678999999999995444477888899999999976553       333 3446


Q ss_pred             hcCCCCCCEE-ecCCCCCCCCC----CCCCCcEEEcCCccccc--cccccCCCCCccEEeccCccccchhHHHhhhccCC
Q 007082          208 LKMFPRLSFL-NLAWTGVTKLP----NISSLECLNLSNCTIDS--ILEGNENKAPLAKISLAGTTFINEREAFLYIETSL  280 (619)
Q Consensus       208 ~~~~~~L~~L-~l~~n~l~~l~----~l~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  280 (619)
                      +.++++|+.| .+.......++    .+++|++|++++|.+..  +...+..+++|++|++.+| +...........+++
T Consensus       261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            7888888887 34333222222    34566666666665442  2222335555555555555 221111111123444


Q ss_pred             CcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEcc-
Q 007082          281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS-  359 (619)
Q Consensus       281 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~-  359 (619)
                      |+.|++.++...+             ...++.+++.....+...+++|+.|.+..+.+++..+..+...+++|+.|+++ 
T Consensus       340 L~~L~L~~~~~~g-------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~  406 (594)
T 2p1m_B          340 LRELRVFPSEPFV-------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI  406 (594)
T ss_dssp             CCEEEEECSCTTC-------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             CCEEEEecCcccc-------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeec
Confidence            5555442210000             00223444444444443235555555555555554444443345555555555 


Q ss_pred             -C----CCCC----h-HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhcc-CCcCCEEEccCCCCCCCCc
Q 007082          360 -G----TQID----D-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQN-LNHLERLNLEQTQVSDATL  428 (619)
Q Consensus       360 -~----n~l~----~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~  428 (619)
                       +    +.++    + ..+..+..+++|++|++++ .+++....            .+.. +++|++|++++|.+++..+
T Consensus       407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~------------~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE------------YIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH------------HHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH------------HHHHhchhccEeeccCCCCcHHHH
Confidence             2    3333    1 1122234455555555544 33332222            2222 4555555555555544333


Q ss_pred             ccc-cCCCCCCEEecCCCCCCchhHH-hhcCCCCCCEEEcCCCccCchhhccC-CCCCCCcEEEcCCC
Q 007082          429 FPL-STFKELIHLSLRNASLTDVSLH-QLSSLSKLTNLSIRDAVLTNSGLGSF-KPPRSLKLLDLHGG  493 (619)
Q Consensus       429 ~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~l~l~~n  493 (619)
                      ..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.++...+..+
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            333 3455555555555555443332 22335555555555555544333333 22445544444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.5e-29  Score=250.89  Aligned_cols=287  Identities=17%  Similarity=0.212  Sum_probs=177.1

Q ss_pred             CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082          141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA  220 (619)
Q Consensus       141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  220 (619)
                      +++.++++++.++..+. .  -.++|+.|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~-~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK-D--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCC-S--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCc-c--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            56666666665554321 1  12467777777777776665667777777777777777776666666666666666666


Q ss_pred             CCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh----hh
Q 007082          221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----CF  296 (619)
Q Consensus       221 ~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~  296 (619)
                      +|.++.++                   ..++  ++|++|++++|.+...+.. .+..+++|+.|++++|.+...    ..
T Consensus       109 ~n~l~~l~-------------------~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~  166 (330)
T 1xku_A          109 KNQLKELP-------------------EKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGA  166 (330)
T ss_dssp             SSCCSBCC-------------------SSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred             CCcCCccC-------------------hhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChhh
Confidence            66555443                   2221  3444444444444433322 122333344444443333221    23


Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      +..+++                         |++|++++|.++....    ...++|++|++++|.+++..+..+..+++
T Consensus       167 ~~~l~~-------------------------L~~L~l~~n~l~~l~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  217 (330)
T 1xku_A          167 FQGMKK-------------------------LSYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLNN  217 (330)
T ss_dssp             GGGCTT-------------------------CCEEECCSSCCCSCCS----SCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred             ccCCCC-------------------------cCEEECCCCccccCCc----cccccCCEEECCCCcCCccCHHHhcCCCC
Confidence            344444                         4445555444444321    11367777777777777776667777888


Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      |++|++++|.+++..+.            .+..+++|++|++++|+++ .+|..+..+++|++|++++|.++++.+..|.
T Consensus       218 L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          218 LAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             CCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CCEEECCCCcCceeChh------------hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            88888888888776665            6777888888888888877 5667777788888888888888877666664


Q ss_pred             C------CCCCCEEEcCCCccCc--hhhccCCCCCCCcEEEcCCCc
Q 007082          457 S------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGW  494 (619)
Q Consensus       457 ~------l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~l~l~~n~  494 (619)
                      .      .+.|+.|++++|++..  ..|..|..+.+++.+++++|.
T Consensus       285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            3      3678888888888764  455677777888888888873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.3e-29  Score=252.39  Aligned_cols=287  Identities=17%  Similarity=0.181  Sum_probs=177.2

Q ss_pred             CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082          141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA  220 (619)
Q Consensus       141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  220 (619)
                      +++.++++++.++..+. .+  .++|+.|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            45666666665554321 11  2567777777777776666667777777777777777777667777777777777766


Q ss_pred             CCCCCCCCC--CCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhh
Q 007082          221 WTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL  297 (619)
Q Consensus       221 ~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  297 (619)
                      +|.++.++.  .++|++|++++|.+..++.. +..+++|++|++++|.+......                     ...+
T Consensus       111 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~  169 (332)
T 2ft3_A          111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE---------------------PGAF  169 (332)
T ss_dssp             SSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC---------------------TTSS
T ss_pred             CCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC---------------------cccc
Confidence            666665542  24566666666655555443 22344444444444433211000                     0122


Q ss_pred             hcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCC
Q 007082          298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL  377 (619)
Q Consensus       298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  377 (619)
                      ..+ +|++|++++|.+++                         ... .   ..++|++|++++|.+++..+..+..+++|
T Consensus       170 ~~l-~L~~L~l~~n~l~~-------------------------l~~-~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L  219 (332)
T 2ft3_A          170 DGL-KLNYLRISEAKLTG-------------------------IPK-D---LPETLNELHLDHNKIQAIELEDLLRYSKL  219 (332)
T ss_dssp             CSC-CCSCCBCCSSBCSS-------------------------CCS-S---SCSSCSCCBCCSSCCCCCCTTSSTTCTTC
T ss_pred             cCC-ccCEEECcCCCCCc-------------------------cCc-c---ccCCCCEEECCCCcCCccCHHHhcCCCCC
Confidence            333 56666666665543                         211 1   12466667777777666665666677777


Q ss_pred             cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082          378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS  457 (619)
Q Consensus       378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  457 (619)
                      ++|++++|++++..+.            .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..
T Consensus       220 ~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          220 YRLGLGHNQIRMIENG------------SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             SCCBCCSSCCCCCCTT------------GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             CEEECCCCcCCcCChh------------HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            7777777777776665            5777777777777777777 56666777777888888887777776666554


Q ss_pred             ------CCCCCEEEcCCCccC--chhhccCCCCCCCcEEEcCCCc
Q 007082          458 ------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLDLHGGW  494 (619)
Q Consensus       458 ------l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~l~l~~n~  494 (619)
                            .++|+.|++++|++.  +..+..|..+++|+.+++++|.
T Consensus       287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                  356788888888877  4566677777888888887774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=3.2e-29  Score=261.39  Aligned_cols=258  Identities=16%  Similarity=0.222  Sum_probs=195.9

Q ss_pred             CCEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082          214 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL  291 (619)
Q Consensus       214 L~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  291 (619)
                      ...++..+..++.+|.  .++++.|++++|.+..++..                        .+..+++|++|++++|.+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~------------------------~~~~l~~L~~L~Ls~n~i  100 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN------------------------SFKHLRHLEILQLSRNHI  100 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT------------------------TTSSCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH------------------------HhhCCCCCCEEECCCCcC
Confidence            3445555555555442  24455555555555544422                        233445555555555554


Q ss_pred             chh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC-CCCChHHH
Q 007082          292 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAI  368 (619)
Q Consensus       292 ~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~  368 (619)
                      +.+  ..+..+++|++|++++|.+++.....+..+ ++|++|++++|+++......+ ..+++|++|++++ +.+....+
T Consensus       101 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECT
T ss_pred             CccChhhccCCccCCEEECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCc
Confidence            444  345667777777777777776555555555 778888888888777654444 6688999999998 45666666


Q ss_pred             HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC
Q 007082          369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  448 (619)
Q Consensus       369 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  448 (619)
                      ..|..+++|++|++++|+++.. |             .+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLREI-P-------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCSSC-C-------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             chhhcccccCeecCCCCcCccc-c-------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence            6788999999999999998754 3             4778899999999999999888999999999999999999999


Q ss_pred             chhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCe
Q 007082          449 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRI  511 (619)
Q Consensus       449 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  511 (619)
                      ++.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|||.|+|.+.|+..|....
T Consensus       245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~  307 (440)
T 3zyj_A          245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDM  307 (440)
T ss_dssp             EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred             EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence            999999999999999999999999988888999999999999999999999999998876543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.8e-29  Score=250.39  Aligned_cols=294  Identities=18%  Similarity=0.209  Sum_probs=199.4

Q ss_pred             EEecCCCCCCCCCC--CCCCcEEEcCCcccccccc-ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082          216 FLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (619)
Q Consensus       216 ~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  292 (619)
                      ..+.+++.++.+|.  .++|++|++++|.++.++. .+..+++|++|++++|.+.+.++. .+..+++|++|++++|.++
T Consensus        35 ~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCS
T ss_pred             EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCC
Confidence            34444444444442  2355566666665555554 334566666666666665554332 2345566666666666666


Q ss_pred             hh--hhhhcCCCCCEEeCcCCCCChhHH-HHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEEEccCCCCChHHH
Q 007082          293 RF--CFLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGTQIDDYAI  368 (619)
Q Consensus       293 ~~--~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  368 (619)
                      ..  ..+..+++|++|++++|.+++... ..+..+ ++|++|++++| .+....+..+ +.+++|++|++++|.+++..+
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTCCEECT
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCcCccCH
Confidence            55  236667777777777777765433 234444 78888888877 3555544444 568888888888888888777


Q ss_pred             HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccccc---CCCCCCEEecCCC
Q 007082          369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS---TFKELIHLSLRNA  445 (619)
Q Consensus       369 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n  445 (619)
                      ..+..+++|++|++++|.+....+.            .+..+++|++|++++|.+++..+..+.   ....++.++++++
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~  259 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHILLLEI------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV  259 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCSTTHHHH------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred             HHHhccccCCeecCCCCccccchhh------------hhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence            7888888899999988888655444            566788899999999988876554443   3577889999999


Q ss_pred             CCCch----hHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhCCCeeeecccccc
Q 007082          446 SLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHPRIEVWHELSVI  520 (619)
Q Consensus       446 ~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~  520 (619)
                      .+++.    +|..+..+++|++|++++|+++......|..+++|+.|++++|++.|+|. +.++..|.............
T Consensus       260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~  339 (353)
T 2z80_A          260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK  339 (353)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCB
T ss_pred             cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccCCCCcc
Confidence            98874    56778999999999999999997655557889999999999999999996 66666665332222123344


Q ss_pred             cCCC
Q 007082          521 CPSD  524 (619)
Q Consensus       521 ~~~~  524 (619)
                      |..|
T Consensus       340 C~~p  343 (353)
T 2z80_A          340 CSGS  343 (353)
T ss_dssp             BTTT
T ss_pred             cCCC
Confidence            5543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=4.1e-29  Score=247.63  Aligned_cols=260  Identities=18%  Similarity=0.169  Sum_probs=194.1

Q ss_pred             CEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082          215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL  291 (619)
Q Consensus       215 ~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  291 (619)
                      +.++.+++.++.+|.  .+++++|++++|.+..++...+ .+++|++|++++|.+......                   
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------   70 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC-------------------   70 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE-------------------
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc-------------------
Confidence            456666666666652  3467777777777777666543 666666676666666533100                   


Q ss_pred             chhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHh
Q 007082          292 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM  371 (619)
Q Consensus       292 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  371 (619)
                        ...+..+++|++|++++|.++... ..+..+ ++|++|++++|++++......+..+++|++|++++|.+.+..+..+
T Consensus        71 --~~~~~~~~~L~~L~Ls~n~i~~l~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  146 (306)
T 2z66_A           71 --SQSDFGTTSLKYLDLSFNGVITMS-SNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  146 (306)
T ss_dssp             --EHHHHSCSCCCEEECCSCSEEEEE-EEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred             --ccccccccccCEEECCCCccccCh-hhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc
Confidence              012233444555555554443221 112222 5666666666666554332223668899999999999888777788


Q ss_pred             hCCCCCcEEEccCCccCc-chhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          372 SMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       372 ~~~~~L~~L~L~~n~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                      ..+++|++|++++|.+++ ..|.            .+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++.
T Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          147 NGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             ccCcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence            899999999999999987 4566            789999999999999999988889999999999999999999998


Q ss_pred             hHHhhcCCCCCCEEEcCCCccCchhhccCCCC-CCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082          451 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAILQFCKMHP  509 (619)
Q Consensus       451 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~  509 (619)
                      .+..+..+++|+.|++++|++++..+..+..+ ++|+.|++++|++.|+|...++.+|..
T Consensus       215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~  274 (306)
T 2z66_A          215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  274 (306)
T ss_dssp             CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred             ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence            88889999999999999999999988888888 499999999999999998888777764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1e-28  Score=258.54  Aligned_cols=256  Identities=20%  Similarity=0.242  Sum_probs=196.6

Q ss_pred             CEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcc
Q 007082          215 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLS  292 (619)
Q Consensus       215 ~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  292 (619)
                      ..++..+..++.+|.  .++++.|++++|.+..+++.                        .+..+++|+.|++++|.++
T Consensus        57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~------------------------~~~~l~~L~~L~Ls~n~i~  112 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD------------------------TFRHLHHLEVLQLGRNSIR  112 (452)
T ss_dssp             CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT------------------------TTTTCTTCCEEECCSSCCC
T ss_pred             cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH------------------------HcCCCCCCCEEECCCCccC
Confidence            445555555555542  23555555555555544322                        1234445555555555444


Q ss_pred             hh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC-CCCChHHHH
Q 007082          293 RF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAIS  369 (619)
Q Consensus       293 ~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~  369 (619)
                      ..  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|+++......+ ..+++|++|++++ +.+....+.
T Consensus       113 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~  190 (452)
T 3zyi_A          113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEG  190 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTT
T ss_pred             CcChhhccCcccCCEEECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChh
Confidence            44  346667777777777777776655555555 788888888888877654444 6789999999998 556666666


Q ss_pred             HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082          370 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  449 (619)
Q Consensus       370 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  449 (619)
                      .|..+++|++|++++|++++. |             .+..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKDM-P-------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSSC-C-------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred             hccCCCCCCEEECCCCccccc-c-------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence            788999999999999999865 3             47788999999999999999889999999999999999999999


Q ss_pred             hhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCC
Q 007082          450 VSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR  510 (619)
Q Consensus       450 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~  510 (619)
                      +.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|||.|+|.+.|+..|...
T Consensus       257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~  317 (452)
T 3zyi_A          257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE  317 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred             ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence            9999999999999999999999998888889999999999999999999999988777643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=6.2e-28  Score=241.83  Aligned_cols=269  Identities=15%  Similarity=0.148  Sum_probs=153.6

Q ss_pred             CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEec
Q 007082          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL  219 (619)
Q Consensus       140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  219 (619)
                      +.|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|.++++|++|++++|.++.... .+.  ++|+.|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-KMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS-SCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh-hhc--ccccEEEC
Confidence            455555555555555544455555556666666555555555555556666666666655543221 111  23333333


Q ss_pred             CCCCCCCCCCCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccch-hHHHhhhccCCCcEEeccCCCcchhhhh
Q 007082          220 AWTGVTKLPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINE-REAFLYIETSLLSFLDVSNSSLSRFCFL  297 (619)
Q Consensus       220 ~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~  297 (619)
                      ++|.+.                   .++.. +..+++|+.|++++|.+... .....+..+++|++|++++|.++.++..
T Consensus       129 ~~n~l~-------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~  189 (330)
T 1xku_A          129 HENEIT-------------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG  189 (330)
T ss_dssp             CSSCCC-------------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred             CCCccc-------------------ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc
Confidence            333332                   22221 12333333333333333211 0011233456666666666655433110


Q ss_pred             hcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCC
Q 007082          298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL  377 (619)
Q Consensus       298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  377 (619)
                       ..                         ++|++|++++|++++..+..+ +.+++|++|++++|.+++..+..+..+++|
T Consensus       190 -~~-------------------------~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          190 -LP-------------------------PSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             -CC-------------------------TTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             -cc-------------------------ccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence             01                         345555555555555434333 457777777777777777666667778888


Q ss_pred             cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC------CCCCCEEecCCCCCCc--
Q 007082          378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNASLTD--  449 (619)
Q Consensus       378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~--  449 (619)
                      ++|++++|+++ .+|.            .+..+++|++|++++|.+++..+..|..      .+.++.|++++|.+..  
T Consensus       243 ~~L~L~~N~l~-~lp~------------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          243 RELHLNNNKLV-KVPG------------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             CEEECCSSCCS-SCCT------------TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             CEEECCCCcCc-cCCh------------hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence            88888888877 3444            5778888888888888888776666643      3678899999998764  


Q ss_pred             hhHHhhcCCCCCCEEEcCCCc
Q 007082          450 VSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       450 ~~~~~~~~l~~L~~L~L~~n~  470 (619)
                      +.|..|..+++++.++|++|+
T Consensus       310 i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC----
T ss_pred             cCccccccccceeEEEecccC
Confidence            456788889999999999885

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=4.5e-28  Score=242.99  Aligned_cols=262  Identities=15%  Similarity=0.208  Sum_probs=149.3

Q ss_pred             CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEec
Q 007082          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL  219 (619)
Q Consensus       140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  219 (619)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+. +.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS-CC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc-cc--ccCCEEEC
Confidence            4555555555555554444555555555555555555555555555555555665555555532222 11  45566666


Q ss_pred             CCCCCCCCC-----CCCCCcEEEcCCccccc--c-ccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082          220 AWTGVTKLP-----NISSLECLNLSNCTIDS--I-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL  291 (619)
Q Consensus       220 ~~n~l~~l~-----~l~~L~~L~l~~~~l~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  291 (619)
                      ++|.+..++     .+++|++|++++|.+..  + +..+..+ +|+.|++++|.+..++...                  
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~------------------  191 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL------------------  191 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS------------------
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc------------------
Confidence            666555433     45666666666666642  2 2222233 6666666666655433211                  


Q ss_pred             chhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHh
Q 007082          292 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM  371 (619)
Q Consensus       292 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  371 (619)
                              .++|++|++++|.+++..+..+                          ..+++|++|++++|.+++..+..+
T Consensus       192 --------~~~L~~L~l~~n~i~~~~~~~l--------------------------~~l~~L~~L~L~~N~l~~~~~~~~  237 (332)
T 2ft3_A          192 --------PETLNELHLDHNKIQAIELEDL--------------------------LRYSKLYRLGLGHNQIRMIENGSL  237 (332)
T ss_dssp             --------CSSCSCCBCCSSCCCCCCTTSS--------------------------TTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred             --------cCCCCEEECCCCcCCccCHHHh--------------------------cCCCCCCEEECCCCcCCcCChhHh
Confidence                    1345555555555543322222                          335556666666666665555556


Q ss_pred             hCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC------CCCCCEEecCCC
Q 007082          372 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST------FKELIHLSLRNA  445 (619)
Q Consensus       372 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n  445 (619)
                      ..+++|++|++++|+++ .+|.            .+..+++|++|++++|.+++..+..|..      ..+|+.|++++|
T Consensus       238 ~~l~~L~~L~L~~N~l~-~lp~------------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLS-RVPA------------GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCT------------TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             hCCCCCCEEECCCCcCe-ecCh------------hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence            66667777777777665 3444            4666777777777777777655555543      356778888888


Q ss_pred             CCC--chhHHhhcCCCCCCEEEcCCCc
Q 007082          446 SLT--DVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       446 ~l~--~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                      .+.  +..+..|..+++|+.+++++|+
T Consensus       305 ~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          305 PVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccCcccccccchhhhhhccccc
Confidence            776  5566777888888888888774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.7e-29  Score=249.13  Aligned_cols=250  Identities=17%  Similarity=0.207  Sum_probs=212.0

Q ss_pred             CCCcEEEcCCcccc---ccccccCCCCCccEEeccC-ccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCC
Q 007082          231 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE  304 (619)
Q Consensus       231 ~~L~~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~  304 (619)
                      .+++.|++++|.+.   .+|..+..+++|++|++++ |.+.+..+. .+..+++|++|++++|.+++.  ..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            46777777777776   4677777888888888884 766643332 245788888888888888744  5688899999


Q ss_pred             EEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCC-CCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082          305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (619)
Q Consensus       305 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  383 (619)
                      +|++++|.+++..+..+..+ ++|++|++++|++++..+..+ +.++ +|++|++++|.+++..|..+..++ |++|+++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            99999999887777777777 999999999999987666666 4566 999999999999988888888887 9999999


Q ss_pred             CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCE
Q 007082          384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  463 (619)
Q Consensus       384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  463 (619)
                      +|.+++..+.            .+..+++|++|++++|.+++..+. +..+++|++|+|++|.+++..|..+..+++|++
T Consensus       206 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          206 RNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             SSEEEECCGG------------GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             CCcccCcCCH------------HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence            9999988887            899999999999999999876665 788999999999999999889999999999999


Q ss_pred             EEcCCCccCchhhccCCCCCCCcEEEcCCCccCCH
Q 007082          464 LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE  498 (619)
Q Consensus       464 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  498 (619)
                      |++++|++++.+|.. ..+++|+.+++++|++.|+
T Consensus       273 L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             EECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            999999999988876 7789999999999998773

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.1e-28  Score=238.67  Aligned_cols=222  Identities=16%  Similarity=0.216  Sum_probs=187.7

Q ss_pred             CCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCC-CCCchHHHHHhcCCCCcE
Q 007082          279 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEI  355 (619)
Q Consensus       279 ~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~  355 (619)
                      ++++.|++++|.++..  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|. +....+..+ ..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATF-HGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHh-cCCcCCCE
Confidence            3455555555555544  246677888888888888877666666666 888899998887 776655554 66899999


Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCC
Q 007082          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  435 (619)
Q Consensus       356 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  435 (619)
                      |++++|.+++..+..+..+++|++|++++|++++..+.            .|..+++|++|++++|++++..+..|..++
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------------TFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh------------HhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            99999999988888889999999999999999887766            789999999999999999977777799999


Q ss_pred             CCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082          436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  514 (619)
Q Consensus       436 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  514 (619)
                      +|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.|+|...++.+|.......
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~  256 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS  256 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE
T ss_pred             ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccc
Confidence            9999999999999998999999999999999999999988888889999999999999999999998888887665544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1e-28  Score=244.97  Aligned_cols=252  Identities=16%  Similarity=0.174  Sum_probs=149.3

Q ss_pred             CCCcEEEccCCCCCh--hHHHHhhcCCCCCEEEcCC-CCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCE
Q 007082          140 STLEKLWLSETGLTA--DGIALLSSLQNLSVLDLGG-LPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSF  216 (619)
Q Consensus       140 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~  216 (619)
                      .++++|++++|.+++  ..+..++.+++|++|++++ |.+.+..|..|.++++|++|++++|.+++..|..|..+++|  
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L--  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL--  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC--
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC--
Confidence            355666666666554  4445556666666666663 55555555556666666666666666655555555544333  


Q ss_pred             EecCCCCCCCCCCCCCCcEEEcCCcccc-ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhh
Q 007082          217 LNLAWTGVTKLPNISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC  295 (619)
Q Consensus       217 L~l~~n~l~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (619)
                                       ++|++++|.+. .+|..+..+                                          
T Consensus       128 -----------------~~L~Ls~N~l~~~~p~~~~~l------------------------------------------  148 (313)
T 1ogq_A          128 -----------------VTLDFSYNALSGTLPPSISSL------------------------------------------  148 (313)
T ss_dssp             -----------------CEEECCSSEEESCCCGGGGGC------------------------------------------
T ss_pred             -----------------CEEeCCCCccCCcCChHHhcC------------------------------------------
Confidence                             33333333333 223322223                                          


Q ss_pred             hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCC
Q 007082          296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP  375 (619)
Q Consensus       296 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  375 (619)
                           ++|++|++++|.+++..+..+..+.++|++|++++|++++..+..+ +.++ |++|++++|.+++..+..+..++
T Consensus       149 -----~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          149 -----PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             -----TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred             -----CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence                 3333333333333322232333321245555555555554434333 3344 77777777777766666677777


Q ss_pred             CCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhh
Q 007082          376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL  455 (619)
Q Consensus       376 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  455 (619)
                      +|++|++++|++++.++.             +..+++|++|++++|++++.+|..+..+++|++|+|++|++++.+|.. 
T Consensus       222 ~L~~L~L~~N~l~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGK-------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             CCSEEECCSSEECCBGGG-------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             CCCEEECCCCceeeecCc-------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence            788888888777765553             566778888888888887777777878888888888888887766654 


Q ss_pred             cCCCCCCEEEcCCCc-cCc
Q 007082          456 SSLSKLTNLSIRDAV-LTN  473 (619)
Q Consensus       456 ~~l~~L~~L~L~~n~-l~~  473 (619)
                      ..+++|+.+++++|+ +.|
T Consensus       288 ~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEES
T ss_pred             ccccccChHHhcCCCCccC
Confidence            667778888888876 444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=7.1e-28  Score=239.57  Aligned_cols=266  Identities=20%  Similarity=0.203  Sum_probs=177.8

Q ss_pred             CCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecC
Q 007082          141 TLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA  220 (619)
Q Consensus       141 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  220 (619)
                      +++..+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            44555666666665555666677788888888888887777778888888888888888776544  6666666666666


Q ss_pred             CCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcC
Q 007082          221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQM  300 (619)
Q Consensus       221 ~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  300 (619)
                      +|.++.++..++|++|++++|.+..++..                                                 .+
T Consensus        89 ~n~l~~l~~~~~L~~L~l~~n~l~~~~~~-------------------------------------------------~~  119 (317)
T 3o53_A           89 NNYVQELLVGPSIETLHAANNNISRVSCS-------------------------------------------------RG  119 (317)
T ss_dssp             SSEEEEEEECTTCCEEECCSSCCSEEEEC-------------------------------------------------CC
T ss_pred             CCccccccCCCCcCEEECCCCccCCcCcc-------------------------------------------------cc
Confidence            66665555555555555555555443321                                                 12


Q ss_pred             CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  380 (619)
                      ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.+.+++|++|++++|.+++..  ....+++|++|
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L  196 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTL  196 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEE
T ss_pred             CCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEE
Confidence            345555555555544433333333 566666666666666555555455677777777777777652  22347788888


Q ss_pred             EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC-chhHHhhcCCC
Q 007082          381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLS  459 (619)
Q Consensus       381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~  459 (619)
                      ++++|++++..+             .+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++ +..+..+..++
T Consensus       197 ~Ls~N~l~~l~~-------------~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          197 DLSSNKLAFMGP-------------EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             ECCSSCCCEECG-------------GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             ECCCCcCCcchh-------------hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence            888888876543             4677788888888888887 45667778888888888888887 66777888888


Q ss_pred             CCCEEEcCCC-ccCch
Q 007082          460 KLTNLSIRDA-VLTNS  474 (619)
Q Consensus       460 ~L~~L~L~~n-~l~~~  474 (619)
                      +|+.+++++| .+++.
T Consensus       263 ~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          263 RVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHHHHHHHSS
T ss_pred             cceEEECCCchhccCC
Confidence            8888888753 34444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2e-25  Score=225.72  Aligned_cols=281  Identities=19%  Similarity=0.132  Sum_probs=159.0

Q ss_pred             CCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCE
Q 007082          113 GMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEY  192 (619)
Q Consensus       113 ~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  192 (619)
                      .|+.....+++++ .++.. +..+  .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++
T Consensus        29 ~C~~~~~c~~~~~-~l~~i-P~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSG-SLNSI-PSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCST-TCSSC-CTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCC-Ccccc-cccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            4566666777766 44432 2222  247777777777777766556777777777777777777766666777777777


Q ss_pred             EEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCcccccccc--ccCCCCCccEEeccCcc-ccch
Q 007082          193 LDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILE--GNENKAPLAKISLAGTT-FINE  269 (619)
Q Consensus       193 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~-~~~~  269 (619)
                      |++++|.+++..+..|..+++|++|++++|.++.+                   +.  .+..+++|++|++++|. +..+
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-------------------~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-------------------GETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS-------------------CSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc-------------------CchhhhccCCCCcEEECCCCcccccc
Confidence            77777777766666666666666666666655443                   32  22244455555555442 2222


Q ss_pred             hHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHH
Q 007082          270 REAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA  347 (619)
Q Consensus       270 ~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  347 (619)
                      ++. .+..+++|++|++++|.+++.  ..+..+++|++|++++|.++......+... ++|+.|++++|.+++..+..+ 
T Consensus       166 ~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l-  242 (353)
T 2z80_A          166 QRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSEL-  242 (353)
T ss_dssp             CTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT-TTEEEEEEESCBCTTCCCC---
T ss_pred             CHH-HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc-ccccEEECCCCcccccccccc-
Confidence            211 122334444444444444333  234445555555555555544333323223 555555555555544321111 


Q ss_pred             hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc----hhccccchhhhhhHHhhccCCcCCEEEccCCCC
Q 007082          348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF----IQQVGAETDLVLSLTALQNLNHLERLNLEQTQV  423 (619)
Q Consensus       348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  423 (619)
                                           ......+.++.++++++.+.+.    +|.            .+..+++|++|++++|++
T Consensus       243 ---------------------~~~~~~~~l~~l~L~~~~l~~~~l~~l~~------------~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          243 ---------------------STGETNSLIKKFTFRNVKITDESLFQVMK------------LLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             -------------------------CCCCCCEEEEESCBCCHHHHHHHHH------------HHHTCTTCCEEECCSSCC
T ss_pred             ---------------------ccccccchhhccccccccccCcchhhhHH------------HHhcccCCCEEECCCCCC
Confidence                                 0112345556666666655442    333            567777888888888877


Q ss_pred             CCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082          424 SDATLFPLSTFKELIHLSLRNASLTDVSL  452 (619)
Q Consensus       424 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  452 (619)
                      +...+..|..+++|++|+|++|.+++..+
T Consensus       290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            74433345777888888888888777543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=7.2e-26  Score=224.28  Aligned_cols=241  Identities=19%  Similarity=0.283  Sum_probs=169.9

Q ss_pred             CCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCcccccc---ccccCCCCCccEEec
Q 007082          190 LEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI---LEGNENKAPLAKISL  261 (619)
Q Consensus       190 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~l  261 (619)
                      -+.++.+++.++... ..+  .++|+.|++++|.++.++     .+++|++|++++|.+..+   +..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~~ip-~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSCC-SCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccCC-CCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            357888888877543 322  368999999999998654     678999999999998855   455557788888888


Q ss_pred             cCccccchhHHHhhhccCCCcEEeccCCCcchhh---hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCC
Q 007082          262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRF  338 (619)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  338 (619)
                      ++|.+..++..  +..+++|++|++++|.++...   .+..+                         ++|++|++++|.+
T Consensus        86 s~n~i~~l~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-------------------------~~L~~L~l~~n~l  138 (306)
T 2z66_A           86 SFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-------------------------RNLIYLDISHTHT  138 (306)
T ss_dssp             CSCSEEEEEEE--EETCTTCCEEECTTSEEESSTTTTTTTTC-------------------------TTCCEEECTTSCC
T ss_pred             CCCccccChhh--cCCCCCCCEEECCCCcccccccchhhhhc-------------------------cCCCEEECCCCcC
Confidence            88877765543  334555555555555554431   23333                         5555555555555


Q ss_pred             CCchHHHHHhcCCCCcEEEccCCCCCh-HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEE
Q 007082          339 SSAGVGILAGHLPNLEILSLSGTQIDD-YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN  417 (619)
Q Consensus       339 ~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  417 (619)
                      .+..+..+ +.+++|++|++++|.+++ ..+..+..+++|++|++++|++++..+.            .+..+++|++|+
T Consensus       139 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~  205 (306)
T 2z66_A          139 RVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------------AFNSLSSLQVLN  205 (306)
T ss_dssp             EECSTTTT-TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEE
T ss_pred             Cccchhhc-ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH------------HhcCCCCCCEEE
Confidence            44433333 456777777777777765 3455667778888888888888777666            677788888888


Q ss_pred             ccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCC-CCCEEEcCCCccCc
Q 007082          418 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS-KLTNLSIRDAVLTN  473 (619)
Q Consensus       418 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~  473 (619)
                      +++|.+++..+..+..+++|+.|++++|.+++..+..+..++ +|++|+|++|++++
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            888888776666777788888888888888887777777774 78888888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=5.8e-26  Score=225.75  Aligned_cols=246  Identities=17%  Similarity=0.198  Sum_probs=202.4

Q ss_pred             CcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCC
Q 007082          233 LECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS  311 (619)
Q Consensus       233 L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n  311 (619)
                      ++..+++.+.+...+..++ .+++|++|++++|.+...++. .+..+++|++|++++|.+++...+..+++|++|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence            4455666666665555554 667888888888888876643 34678899999999998887766888999999999999


Q ss_pred             CCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcch
Q 007082          312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI  391 (619)
Q Consensus       312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~  391 (619)
                      .+++..     .. ++|++|++++|++++..+    ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        91 ~l~~l~-----~~-~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           91 YVQELL-----VG-PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             EEEEEE-----EC-TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             cccccc-----CC-CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            887644     22 899999999999988754    34789999999999999988878889999999999999999876


Q ss_pred             hccccchhhhhhHHhh-ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082          392 QQVGAETDLVLSLTAL-QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       392 ~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                      +.            .+ ..+++|++|++++|.+++. + ....+++|++|+|++|.++++++. +..+++|+.|++++|+
T Consensus       161 ~~------------~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          161 FA------------ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK  225 (317)
T ss_dssp             GG------------GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC
T ss_pred             HH------------HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCc
Confidence            66            44 5789999999999999865 2 334589999999999999997654 8899999999999999


Q ss_pred             cCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHH
Q 007082          471 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC  505 (619)
Q Consensus       471 l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  505 (619)
                      +++. |..+..+++|+.|++++|++.|++...++.
T Consensus       226 l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          226 LVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             CCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             ccch-hhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            9964 667888999999999999999887655543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=9.6e-25  Score=233.98  Aligned_cols=266  Identities=19%  Similarity=0.193  Sum_probs=147.0

Q ss_pred             CCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEE
Q 007082          115 TCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLD  194 (619)
Q Consensus       115 ~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~  194 (619)
                      .++++|++++| .++. .+..+.  ++|++|++++|.++..+.    .+++|++|++++|.+++...    .+++|++|+
T Consensus        40 ~~l~~L~ls~n-~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGES-GLTT-LPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSS-CCSC-CCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCC-CcCc-cChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            35777777777 4442 222222  567777777776664322    45566666666666554321    455666666


Q ss_pred             ccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCC-CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHH
Q 007082          195 LWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF  273 (619)
Q Consensus       195 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  273 (619)
                      +++|.+++...    .+++|+.|++++|.++.++. +++|++|++++|.+..+|.                         
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~-------------------------  158 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA-------------------------  158 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-------------------------
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCC-------------------------
Confidence            66665554322    34455555555555544442 2444444444444443332                         


Q ss_pred             hhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCC
Q 007082          274 LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL  353 (619)
Q Consensus       274 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L  353 (619)
                         ..++|+.|++++|.++.++  ..+++|+.|++++|.+++...     ..++|+.|++++|.++...     ..+++|
T Consensus       159 ---~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~-----~~~~~L  223 (622)
T 3g06_A          159 ---LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP-----ALPSGL  223 (622)
T ss_dssp             ---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC-----CCCTTC
T ss_pred             ---ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccC-----CCCCCC
Confidence               1234444444444444433  334556666666665554221     1156666666666666542     124667


Q ss_pred             cEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082          354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST  433 (619)
Q Consensus       354 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  433 (619)
                      ++|++++|.+++.+    ..+++|++|++++|+++... .               .+++|+.|+|++|+++ .+|..+..
T Consensus       224 ~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp-~---------------~~~~L~~L~Ls~N~L~-~lp~~l~~  282 (622)
T 3g06_A          224 KELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLP-M---------------LPSGLLSLSVYRNQLT-RLPESLIH  282 (622)
T ss_dssp             CEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC-C---------------CCTTCCEEECCSSCCC-SCCGGGGG
T ss_pred             CEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCC-c---------------ccccCcEEeCCCCCCC-cCCHHHhh
Confidence            77777777666533    34566777777777665422 1               3456777777777776 45666667


Q ss_pred             CCCCCEEecCCCCCCchhHHhhcC
Q 007082          434 FKELIHLSLRNASLTDVSLHQLSS  457 (619)
Q Consensus       434 l~~L~~L~L~~n~l~~~~~~~~~~  457 (619)
                      +++|+.|+|++|.+++..+..+..
T Consensus       283 l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          283 LSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             SCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             ccccCEEEecCCCCCCcCHHHHHh
Confidence            777777777777777766665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.1e-24  Score=231.36  Aligned_cols=261  Identities=18%  Similarity=0.182  Sum_probs=141.1

Q ss_pred             CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-CCCCCcEEEcCCccc
Q 007082          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-NISSLECLNLSNCTI  243 (619)
Q Consensus       165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~l~~L~~L~l~~~~l  243 (619)
                      +++.|++++|.++.. |..+.  ++|++|++++|.++...+    .+++|++|++++|.++.++ .+++|++|++++|.+
T Consensus        41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL  113 (622)
T ss_dssp             CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCC
T ss_pred             CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcC
Confidence            355555555555422 22222  455556665555553222    3455555555555555544 345666666666666


Q ss_pred             cccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHh
Q 007082          244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC  323 (619)
Q Consensus       244 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  323 (619)
                      ..+|.   .+++|+.|++++|.+..++.     .+++|++|++++|.++.++.  .+++|+.|++++|.+++..     .
T Consensus       114 ~~l~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~-----~  178 (622)
T 3g06_A          114 THLPA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP-----M  178 (622)
T ss_dssp             CCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC-----C
T ss_pred             CCCCC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc-----c
Confidence            65555   34566666666666665443     13566666666666655432  3456666666666665533     1


Q ss_pred             cCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhh
Q 007082          324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS  403 (619)
Q Consensus       324 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~  403 (619)
                      .+++|+.|++++|.+++...     .+++|+.|++++|.++..+    ..+++|++|++++|++++.. .          
T Consensus       179 ~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L~~lp-~----------  238 (622)
T 3g06_A          179 LPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP-V----------  238 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCCSCCC-C----------
T ss_pred             cCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccccC----CCCCCCCEEEccCCccCcCC-C----------
Confidence            22566666666666655321     2456666666666655432    12355666666666655421 1          


Q ss_pred             HHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc
Q 007082          404 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  477 (619)
Q Consensus       404 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  477 (619)
                           .+++|++|++++|.+++ +|.   .+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++++..+.
T Consensus       239 -----~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          239 -----LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             -----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             -----CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCCCcCHH
Confidence                 23556666666666553 232   345566666666666543 44555566666666666666655444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=8.2e-26  Score=220.24  Aligned_cols=215  Identities=20%  Similarity=0.224  Sum_probs=171.7

Q ss_pred             CCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082          280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (619)
Q Consensus       280 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  357 (619)
                      ++++|++++|.++..  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+++|++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAF-SGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence            455555555555544  256667778888888877776665556555 788888888888877655554 5688999999


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEccCCccCcc-hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      +++|.+.+..+..+..+++|++|++++|.+++. +|.            .+..+++|++|++++|++++..+..+..+++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG------------GGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCch------------hhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence            999998887766688899999999999999874 466            7899999999999999999877778877777


Q ss_pred             CC----EEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhCC
Q 007082          437 LI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHP  509 (619)
Q Consensus       437 L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~  509 (619)
                      |+    .|++++|.++++.+..+.. .+|++|++++|++++..+..+..+++|+.|++++|+|.|+|. +.++..|..
T Consensus       175 L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~  251 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  251 (276)
T ss_dssp             CTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             ccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHH
Confidence            77    8999999999987766654 489999999999998877778889999999999999999995 555556543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=225.91  Aligned_cols=242  Identities=19%  Similarity=0.236  Sum_probs=160.3

Q ss_pred             CCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCC-----CCCCCCCcEEEcCCccccccccc-cCCCCCccEEecc
Q 007082          189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLA  262 (619)
Q Consensus       189 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~  262 (619)
                      ..+.++..+..++. +|..+  .++++.|++++|.++.     +.++++|++|++++|.+..++.. +..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            45678888887774 34333  3689999999999875     44788999999999999887754 3477788888888


Q ss_pred             CccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCC-CCCc
Q 007082          263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSA  341 (619)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~  341 (619)
                      +|.+..++.. .+..+++|++|++++|.+                      +......+..+ ++|++|++++|. +...
T Consensus       121 ~n~l~~~~~~-~~~~l~~L~~L~L~~N~i----------------------~~~~~~~~~~l-~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTTIPNG-AFVYLSKLKELWLRNNPI----------------------ESIPSYAFNRI-PSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSSCCTT-TSCSCSSCCEEECCSCCC----------------------CEECTTTTTTC-TTCCEEECCCCTTCCEE
T ss_pred             CCcCCeeCHh-HhhccccCceeeCCCCcc----------------------cccCHHHhhhC-cccCEeCCCCCCCccee
Confidence            7777765542 233444555555555544                      44333333333 555555555532 2222


Q ss_pred             hHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCC
Q 007082          342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT  421 (619)
Q Consensus       342 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  421 (619)
                      .... +..+++|++|++++|.++..+  .+..+++|++|+|++|++++..+.            .|.++++|++|++++|
T Consensus       177 ~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          177 SEGA-FEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPG------------SFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CTTT-TTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTC
T ss_pred             Ccch-hhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChh------------hhccCccCCEEECCCC
Confidence            2222 245666777777776666543  356677777777777777766666            6777777777777777


Q ss_pred             CCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       422 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      ++++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            777766777777777777777777777777667777777777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.6e-25  Score=231.29  Aligned_cols=225  Identities=19%  Similarity=0.200  Sum_probs=180.6

Q ss_pred             CCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEE
Q 007082          253 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN  332 (619)
Q Consensus       253 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  332 (619)
                      +++|+.|++++|.+.+.++. .+..+++|++|++++|.+++...+..+++|++|++++|.+++..+     . ++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~-~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----G-PSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----C-TTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----C-CCcCEEE
Confidence            34666666666666655432 345667777777777777666457778888888888888776442     2 7899999


Q ss_pred             ccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhc-cCC
Q 007082          333 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NLN  411 (619)
Q Consensus       333 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~-~l~  411 (619)
                      +++|.+++..+    ..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|.            .+. .++
T Consensus       106 L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~~~l~  169 (487)
T 3oja_A          106 AANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA------------ELAASSD  169 (487)
T ss_dssp             CCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG------------GGGGGTT
T ss_pred             CcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH------------HHhhhCC
Confidence            99999988754    3478999999999999998888888999999999999999988776            554 789


Q ss_pred             cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcC
Q 007082          412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  491 (619)
Q Consensus       412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~  491 (619)
                      +|++|+|++|.+++.  ..+..+++|+.|+|++|.++++++. +..+++|+.|+|++|.+++ +|..+..+++|+.++++
T Consensus       170 ~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          170 TLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             TCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred             cccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence            999999999999865  2344689999999999999997664 8889999999999999997 46668888999999999


Q ss_pred             CCccCCHHHHHHH
Q 007082          492 GGWLLTEDAILQF  504 (619)
Q Consensus       492 ~n~~~~~~~~~~~  504 (619)
                      +|++.|++...++
T Consensus       246 ~N~l~c~~~~~~~  258 (487)
T 3oja_A          246 GNGFHCGTLRDFF  258 (487)
T ss_dssp             TCCBCHHHHHHHH
T ss_pred             CCCCcCcchHHHH
Confidence            9999988765444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=5.1e-25  Score=213.64  Aligned_cols=213  Identities=20%  Similarity=0.270  Sum_probs=175.2

Q ss_pred             CcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC
Q 007082          281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG  360 (619)
Q Consensus       281 L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  360 (619)
                      .+.++++++.++.++. .-.+++++|++++|.+++..+..+..+ ++|++|++++|.++......+ +.+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTT-SSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhh-cCCCCCCEEECCC
Confidence            4555555555555422 112567788888777776655555555 788888888888877654433 6689999999999


Q ss_pred             CCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEE
Q 007082          361 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL  440 (619)
Q Consensus       361 n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  440 (619)
                      |.+++..+..|..+++|++|++++|++++..+.            .|..+++|++|++++|.+++..+..|..+++|++|
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------------VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHH------------HhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            999988877888999999999999999988777            78999999999999999998777778999999999


Q ss_pred             ecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082          441 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH  508 (619)
Q Consensus       441 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~  508 (619)
                      +|++|.++++.+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|||.|+|. +.++.+|.
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l  231 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWL  231 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHH
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHH
Confidence            999999999888889999999999999999998887788889999999999999999995 55555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=7.1e-25  Score=214.36  Aligned_cols=213  Identities=24%  Similarity=0.264  Sum_probs=170.3

Q ss_pred             cCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082          278 TSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (619)
Q Consensus       278 ~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  357 (619)
                      +++++.++++++.++.++. .-.++++.|++++|.+++..+..+..+ ++|+.|++++|.+++....   +.+++|++|+
T Consensus         9 l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCEEE
T ss_pred             cCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCEEE
Confidence            3444455555554444421 112567777777777776666666655 7788888888777765432   4688999999


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCC
Q 007082          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL  437 (619)
Q Consensus       358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  437 (619)
                      +++|.++.. |..+..+++|++|++++|++++..+.            .|.++++|++|++++|++++..+..|..+++|
T Consensus        84 Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           84 LSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             CCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHH------------HHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            999998854 44577899999999999999988777            79999999999999999998888888999999


Q ss_pred             CEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082          438 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  509 (619)
Q Consensus       438 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  509 (619)
                      +.|+|++|+++++++..|..+++|+.|+|++|+++.. |..+.....|+.+++++|||.|+|.+.++.+|..
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~  221 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence            9999999999998888889999999999999999954 5666677899999999999999999888877753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1.8e-24  Score=226.24  Aligned_cols=242  Identities=19%  Similarity=0.210  Sum_probs=161.1

Q ss_pred             CCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCC-----CCCCCCCcEEEcCCccccccccc-cCCCCCccEEecc
Q 007082          189 KLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLA  262 (619)
Q Consensus       189 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~  262 (619)
                      ....++.++..++. +|..+  .++++.|++++|.++.     +.++++|++|++++|.+..++.. +..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            45678888877765 34333  3689999999999885     44789999999999999987754 4478888888888


Q ss_pred             CccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCc
Q 007082          263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSA  341 (619)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~  341 (619)
                      +|.+..++.. .+..+++|++|++++|.++.+                      ....+..+ ++|+.|++++| .+...
T Consensus       132 ~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~l-~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTVIPSG-AFEYLSKLRELWLRNNPIESI----------------------PSYAFNRV-PSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSBCCTT-TSSSCTTCCEEECCSCCCCEE----------------------CTTTTTTC-TTCCEEECCCCTTCCEE
T ss_pred             CCcCCccChh-hhcccCCCCEEECCCCCccee----------------------CHhHHhcC-CcccEEeCCCCCCcccc
Confidence            8887766543 233445555555555544443                      33333333 45555555542 22222


Q ss_pred             hHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCC
Q 007082          342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT  421 (619)
Q Consensus       342 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  421 (619)
                      .... +..+++|++|++++|.+++..  .+..+++|++|++++|++++..+.            .|.++++|++|++++|
T Consensus       188 ~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          188 SEGA-FEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             CTTT-TTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECTTS
T ss_pred             Chhh-ccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeCCC
Confidence            2222 245666777777777666542  355677777777777777776666            6777777777777777


Q ss_pred             CCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          422 QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       422 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      ++++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus       253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            777666777777777777777777777776666777777777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=4.5e-25  Score=219.97  Aligned_cols=231  Identities=16%  Similarity=0.150  Sum_probs=131.9

Q ss_pred             CCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcC
Q 007082          232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSS  310 (619)
Q Consensus       232 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~  310 (619)
                      .++.|++++|.+..+|+.++.+++|++|++++|.+..++..  +..+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            44444444444444555444555555555555555433321  22444455555555544433 3455566666666666


Q ss_pred             CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc
Q 007082          311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  390 (619)
Q Consensus       311 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~  390 (619)
                      |.+.+..+..       +....+.+.          ++.+++|++|++++|.++. .|..+..+++|++|++++|++++.
T Consensus       160 n~~~~~~p~~-------~~~~~~~~~----------~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          160 CPELTELPEP-------LASTDASGE----------HQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL  221 (328)
T ss_dssp             ETTCCCCCSC-------SEEEC-CCC----------EEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCC
T ss_pred             CCCccccChh-------Hhhccchhh----------hccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcC
Confidence            5444332221       111111100          1346666666666666663 344466666777777777766653


Q ss_pred             hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082          391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                       |.            .+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|+
T Consensus       222 -~~------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          222 -GP------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             -CG------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             -ch------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence             22            46666677777777776666666666677777777777776666666666677777777777777


Q ss_pred             cCchhhccCCCCCCCcEEEcCCCcc
Q 007082          471 LTNSGLGSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       471 l~~~~~~~~~~~~~L~~l~l~~n~~  495 (619)
                      +.+.+|..+..+++++.+++..+.+
T Consensus       289 ~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          289 NLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             chhhccHHHhhccCceEEeCCHHHH
Confidence            7766676676677777777666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=2e-24  Score=211.52  Aligned_cols=222  Identities=18%  Similarity=0.242  Sum_probs=159.4

Q ss_pred             CEEecCCCCCCCCC--CCCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082          215 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL  291 (619)
Q Consensus       215 ~~L~l~~n~l~~l~--~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  291 (619)
                      +.++.+++.++.+|  -.+++++|++++|.+..++.. +..+++|++|++++|.+.++.+                    
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------   73 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--------------------   73 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--------------------
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH--------------------
Confidence            45566666666555  234566666666666655533 3345555555555554443322                    


Q ss_pred             chhhhhhcCCCCCEEeCcCCC-CChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082          292 SRFCFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  370 (619)
Q Consensus       292 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  370 (619)
                         ..+..+++|++|++++|. +++..+..+..+ ++|++|++++|.+++..+..+ +.+++|++|++++|.+++..+..
T Consensus        74 ---~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A           74 ---AAFTGLALLEQLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             ---TTTTTCTTCCEEECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ---hhcCCccCCCEEeCCCCCCccccCHHHhcCC-cCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhH
Confidence               345566777777777775 665555555555 778888888887777655444 56888888888888888777777


Q ss_pred             hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                      +..+++|++|++++|++++..+.            .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             hccCCCccEEECCCCcccccCHH------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence            78888888888888888876665            678888888888888888887788888888888888888888888


Q ss_pred             hHHhhcCCCCCCEEEcCCCccCc
Q 007082          451 SLHQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       451 ~~~~~~~l~~L~~L~L~~n~l~~  473 (619)
                      .+..+..+++|+.|++++|++..
T Consensus       217 ~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CHHHcccCcccCEEeccCCCccC
Confidence            87888888888889998888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.8e-25  Score=234.99  Aligned_cols=234  Identities=21%  Similarity=0.217  Sum_probs=112.9

Q ss_pred             CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCcccc
Q 007082          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTID  244 (619)
Q Consensus       165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~  244 (619)
                      +|++|+|++|.+.+..+..|..+++|++|++++|.+++..+  |..+++|++|++++|.++.++..++|++|++++|.+.
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            66666666666666656666666666777766666665443  4454444444444444443333333333333333333


Q ss_pred             ccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhc
Q 007082          245 SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACV  324 (619)
Q Consensus       245 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  324 (619)
                      .++.                                                 ..+++|++|++++|.+++..+..+..+
T Consensus       113 ~~~~-------------------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l  143 (487)
T 3oja_A          113 RVSC-------------------------------------------------SRGQGKKNIYLANNKITMLRDLDEGCR  143 (487)
T ss_dssp             CEEE-------------------------------------------------CCCSSCEEEECCSSCCCSGGGBCGGGG
T ss_pred             CCCc-------------------------------------------------cccCCCCEEECCCCCCCCCCchhhcCC
Confidence            2211                                                 112345555555555544433333333


Q ss_pred             CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082          325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL  404 (619)
Q Consensus       325 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~  404 (619)
                       ++|+.|++++|.+++..+..+.+.+++|++|++++|.+++..+  ...+++|++|+|++|.+++..+            
T Consensus       144 -~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~------------  208 (487)
T 3oja_A          144 -SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP------------  208 (487)
T ss_dssp             -SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG------------
T ss_pred             -CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH------------
Confidence             4455555555555544444433345555555555555554321  2234555555555555544332            


Q ss_pred             HhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC-chhHHhhcCCCCCCEEEc
Q 007082          405 TALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT-DVSLHQLSSLSKLTNLSI  466 (619)
Q Consensus       405 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  466 (619)
                       .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|+.+++
T Consensus       209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence             24444555555555555542 3444444555555555555554 333444444444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.4e-25  Score=222.55  Aligned_cols=246  Identities=20%  Similarity=0.137  Sum_probs=184.8

Q ss_pred             CCCcEEEcCCccccccccccCCCCCccEEeccCccccc--hhHH-----HhhhccCCCcEEeccCCCcchh--hhh--hc
Q 007082          231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN--EREA-----FLYIETSLLSFLDVSNSSLSRF--CFL--TQ  299 (619)
Q Consensus       231 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~-----~~~~~~~~L~~L~l~~n~l~~~--~~~--~~  299 (619)
                      ++|+.|++++|.+ .+|..+...  |+.|++++|.+..  .+..     ..+..+++|++|++++|.+++.  ..+  ..
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            4455566666666 555544432  6666777666643  1111     1222578888888888888754  222  78


Q ss_pred             CCCCCEEeCcCCCCChhHHHHHHhc----CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHH--HHHh--
Q 007082          300 MKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--ISYM--  371 (619)
Q Consensus       300 ~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~--  371 (619)
                      +++|++|++++|.+++. +..+..+    .++|++|++++|++++..+..+ +.+++|++|++++|++.+..  +..+  
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            89999999999999876 4444443    2789999999999998866665 67999999999999988752  3344  


Q ss_pred             hCCCCCcEEEccCCccCcch--hccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc-ccccCCCCCCEEecCCCCCC
Q 007082          372 SMMPSLKFIDISNTDIKGFI--QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLT  448 (619)
Q Consensus       372 ~~~~~L~~L~L~~n~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  448 (619)
                      ..+++|++|++++|++++..  +.           ..+..+++|++|++++|++++..| ..+..+++|++|+|++|.++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCS-----------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHH-----------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ccCCCCCEEECCCCcCcchHHHHH-----------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            78999999999999998432  21           146788999999999999998764 45667899999999999999


Q ss_pred             chhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          449 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       449 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      .+ |..+.  ++|++|++++|++++. |. +..+++|+.|++++|++..
T Consensus       267 ~i-p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 QV-PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SC-CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hh-hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            64 44544  8999999999999987 54 8889999999999999853

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=9e-25  Score=217.80  Aligned_cols=203  Identities=17%  Similarity=0.179  Sum_probs=164.1

Q ss_pred             ccCCCcEEeccCCCcchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcE
Q 007082          277 ETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI  355 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  355 (619)
                      ..+.++.|++++|.++.+ ..+..+++|++|++++|.++ ..+..+..+ ++|++|++++|.++.. +..+ +.+++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLRAL-PASI-ASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCCCC-CGGG-GGCTTCCE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccccC-cHHH-hcCcCCCE
Confidence            346666667766666655 34556777777777777776 344445555 7888888888877744 3333 56888888


Q ss_pred             EEccCCCCChHHHHHhh---------CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCC
Q 007082          356 LSLSGTQIDDYAISYMS---------MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA  426 (619)
Q Consensus       356 L~l~~n~l~~~~~~~~~---------~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  426 (619)
                      |++++|++.+..|..+.         .+++|++|++++|+++ .+|.            .+..+++|++|++++|.+++ 
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~------------~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA------------SIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG------------GGGGCTTCCEEEEESSCCCC-
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH------------hhcCCCCCCEEEccCCCCCc-
Confidence            88888776666555444         4999999999999998 5666            78999999999999999995 


Q ss_pred             CcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          427 TLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       427 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      +|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++.+..|..+..+++|+.|++++|++..
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            56679999999999999999999999999999999999999999999999999999999999999999865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=2e-25  Score=221.32  Aligned_cols=250  Identities=20%  Similarity=0.191  Sum_probs=162.5

Q ss_pred             hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCC--CC-----------CCCCCcEEEcCCcccc-cccccc
Q 007082          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK--LP-----------NISSLECLNLSNCTID-SILEGN  250 (619)
Q Consensus       185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~--l~-----------~l~~L~~L~l~~~~l~-~l~~~~  250 (619)
                      +..++|++|++++|.+  ..|..+...  |+.|++++|.+..  ++           ++++|++|++++|.+. .+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            4456777788888877  344444332  6666777666642  11           3566677777776666 355544


Q ss_pred             --CCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCC
Q 007082          251 --ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL  328 (619)
Q Consensus       251 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  328 (619)
                        ..+++|++|++++|.+.+.+..+  ..+                 ....+++|++|++++|.+++..+..+..+ ++|
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~--~~l-----------------~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L  175 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWL--AEL-----------------QQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PAL  175 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHH--HHH-----------------HTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSC
T ss_pred             HHhcCCCccEEEccCCCCcchhHHH--HHH-----------------HHhhcCCCcEEEeeCCCCccchHHHhccC-CCC
Confidence              45666666666666666553221  111                 00011555555555555555444444444 566


Q ss_pred             cEEEccCCCCCCch--HHHH-HhcCCCCcEEEccCCCCCh---HHHHHhhCCCCCcEEEccCCccCcchhccccchhhhh
Q 007082          329 RNLNLSNTRFSSAG--VGIL-AGHLPNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL  402 (619)
Q Consensus       329 ~~L~L~~n~l~~~~--~~~~-~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~  402 (619)
                      ++|++++|++.+..  +..+ ++.+++|++|++++|.+++   .....+..+++|++|++++|++++..|..        
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------  247 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP--------  247 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS--------
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh--------
Confidence            66666666554421  1111 2567888888888888883   33345567889999999999988866431        


Q ss_pred             hHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082          403 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       403 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                         .+..+++|++|++++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|++++|++++.
T Consensus       248 ---~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          248 ---SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             ---CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             ---hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence               4667889999999999998 6676665  8899999999999987 44 88899999999999998763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=3.6e-23  Score=211.83  Aligned_cols=248  Identities=17%  Similarity=0.222  Sum_probs=171.5

Q ss_pred             CCccccccccccCCCCCccEEeccCccccchhHHH---hhhccCCCcEEeccCCCcchh------------hhhhcCCCC
Q 007082          239 SNCTIDSILEGNENKAPLAKISLAGTTFINEREAF---LYIETSLLSFLDVSNSSLSRF------------CFLTQMKAL  303 (619)
Q Consensus       239 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~------------~~~~~~~~L  303 (619)
                      +...+..++..+..+++|++|++++|.+.......   .+..+++|++|++++|.+..+            ..+..+++|
T Consensus        17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence            33344444455555556666666666555432211   133556666666666533211            234677888


Q ss_pred             CEEeCcCCCCCh----hHHHHHHhcCCCCcEEEccCCCCCCchHHHHHh---cC---------CCCcEEEccCCCCCh-H
Q 007082          304 EHLDLSSSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSGTQIDD-Y  366 (619)
Q Consensus       304 ~~L~l~~n~l~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~~---------~~L~~L~l~~n~l~~-~  366 (619)
                      ++|++++|.+++    ..+..+... ++|++|++++|.+++..+..+..   .+         ++|++|++++|.++. .
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             cEEECCCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            888888888877    344555555 88888888888887654444322   22         889999999998873 3


Q ss_pred             HH---HHhhCCCCCcEEEccCCccCc-----chhccccchhhhhhHHhhccCCcCCEEEccCCCCC----CCCcccccCC
Q 007082          367 AI---SYMSMMPSLKFIDISNTDIKG-----FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS----DATLFPLSTF  434 (619)
Q Consensus       367 ~~---~~~~~~~~L~~L~L~~n~~~~-----~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l  434 (619)
                      .+   ..+..+++|++|++++|+++.     ..+.            .+..+++|++|+|++|.++    ..++..+..+
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~------------~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~  243 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE------------GLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  243 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT------------TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH------------HhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence            33   356678899999999998873     2332            5778889999999999885    4567778888


Q ss_pred             CCCCEEecCCCCCCch----hHHhhcC--CCCCCEEEcCCCccCc----hhhccC-CCCCCCcEEEcCCCccCCHH
Q 007082          435 KELIHLSLRNASLTDV----SLHQLSS--LSKLTNLSIRDAVLTN----SGLGSF-KPPRSLKLLDLHGGWLLTED  499 (619)
Q Consensus       435 ~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~  499 (619)
                      ++|++|+|++|.+++.    ++..+..  +++|+.|+|++|.+++    ..+..+ ..+++|+.|++++|++....
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            9999999999998886    4455533  8899999999999988    355555 55789999999999987654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.9e-22  Score=205.08  Aligned_cols=260  Identities=17%  Similarity=0.123  Sum_probs=153.4

Q ss_pred             HHHHHhcCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCC--CCChhhHhh-------hcCCCCCcEEEcc
Q 007082           82 WMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCV--KVTDAGMKH-------LLSISTLEKLWLS  148 (619)
Q Consensus        82 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~--~l~~~~~~~-------l~~l~~L~~L~L~  148 (619)
                      +...+..+++|++|+|++|. ++...+..    +.++++|++|+|++|.  .+++..+..       +..+++|++|+++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            34456677778888888776 66665544    4467788888887762  222222222       3567788888888


Q ss_pred             CCCCCh----hHHHHhhcCCCCCEEEcCCCCCChhHHHHhhc----C---------CCCCEEEccCCccCc-hhh---Hh
Q 007082          149 ETGLTA----DGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV----L---------TKLEYLDLWGSQVSN-RGA---AV  207 (619)
Q Consensus       149 ~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~----l---------~~L~~L~l~~n~i~~-~~~---~~  207 (619)
                      +|.++.    ..+..+..+++|++|+|++|.+.+..+..+..    +         ++|++|++++|.+++ ..+   ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            877776    34556677778888888888776554444433    3         778888888777762 233   34


Q ss_pred             hcCCCCCCEEecCCCCCC----------CCCCCCCCcEEEcCCccc-----cccccccCCCCCccEEeccCccccchhHH
Q 007082          208 LKMFPRLSFLNLAWTGVT----------KLPNISSLECLNLSNCTI-----DSILEGNENKAPLAKISLAGTTFINEREA  272 (619)
Q Consensus       208 ~~~~~~L~~L~l~~n~l~----------~l~~l~~L~~L~l~~~~l-----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  272 (619)
                      +..+++|+.|++++|.++          .+..+++|++|++++|.+     ..++..+..+++|+.|++++|.+......
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            556666666666666655          233445555555555555     23444444444444444444444332111


Q ss_pred             HhhhccCCCcEEeccCCCcchhhhhh--cCCCCCEEeCcCCCCChh----HHHHHHhcCCCCcEEEccCCCCCCchH--H
Q 007082          273 FLYIETSLLSFLDVSNSSLSRFCFLT--QMKALEHLDLSSSMIGDD----SVEMVACVGANLRNLNLSNTRFSSAGV--G  344 (619)
Q Consensus       273 ~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~--~  344 (619)
                      ..                   ...+.  .+++|++|++++|.+++.    .+..+...+++|+.|++++|++++..+  .
T Consensus       263 ~l-------------------~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~  323 (386)
T 2ca6_A          263 AV-------------------VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD  323 (386)
T ss_dssp             HH-------------------HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHH
T ss_pred             HH-------------------HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHH
Confidence            00                   02232  267788888888887773    444442323788888888888877653  4


Q ss_pred             HHHhcCCCCcEEEccCC
Q 007082          345 ILAGHLPNLEILSLSGT  361 (619)
Q Consensus       345 ~~~~~~~~L~~L~l~~n  361 (619)
                      .+...+++++.+++...
T Consensus       324 ~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          324 EIREVFSTRGRGELDEL  340 (386)
T ss_dssp             HHHHHHHHHTCCEECCC
T ss_pred             HHHHHhhhcCcchhhhc
Confidence            55455566555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=4.3e-23  Score=197.74  Aligned_cols=191  Identities=17%  Similarity=0.254  Sum_probs=164.8

Q ss_pred             CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 007082          302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID  381 (619)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  381 (619)
                      ..++++++++.++..+..    ..+.++.|++++|.+++..+..+ +.+++|++|++++|.+++..+..|..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~~~p~~----~~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG----IPADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC----CCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCeEEecCCCCccccCCC----CCCCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            456677777766643321    12678888888888888766555 6689999999999999998888889999999999


Q ss_pred             ccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCC
Q 007082          382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  461 (619)
Q Consensus       382 L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  461 (619)
                      +++|++++..+.            .|..+++|++|+|++|++++..+..|..+++|++|+|++|+++++.+..|..+++|
T Consensus        90 L~~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           90 LANNQLASLPLG------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             CTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcccccChh------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence            999999988777            78999999999999999998877788999999999999999999888889999999


Q ss_pred             CEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCH-HHHHHHHHhCC
Q 007082          462 TNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE-DAILQFCKMHP  509 (619)
Q Consensus       462 ~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~~  509 (619)
                      +.|+|++|++++..+..+..+++|+.|++++|+|.|+ |.+.++..|..
T Consensus       158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~  206 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIR  206 (251)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence            9999999999998888899999999999999999998 88888877653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6e-22  Score=198.92  Aligned_cols=255  Identities=21%  Similarity=0.240  Sum_probs=171.5

Q ss_pred             CCCCEEEccCCccCchhhHhhcCC--CCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCcc
Q 007082          188 TKLEYLDLWGSQVSNRGAAVLKMF--PRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT  265 (619)
Q Consensus       188 ~~L~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  265 (619)
                      ..++.++++++.+.   +..+..+  ++++.|                   ++++|.+...+..++.+++|++|++++|.
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L-------------------~l~~n~l~~~~~~~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAF-------------------RCPRSFMDQPLAEHFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEE-------------------ECTTCEECSCCCSCCCCBCCCEEECTTCE
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEE-------------------EcCCccccccchhhccCCCCCEEEccCCC
Confidence            34778888887765   2333333  444444                   44455545444445566667777777666


Q ss_pred             ccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCC-CCChhHHHH-HHhcCCCCcEEEccCC-CCCC
Q 007082          266 FINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDDSVEM-VACVGANLRNLNLSNT-RFSS  340 (619)
Q Consensus       266 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~~~~~L~~L~L~~n-~l~~  340 (619)
                      +........+..+++|++|++++|.++..  ..+..+++|++|++++| .+++..... +..+ ++|++|++++| .+++
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~-~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTE  183 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCH
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC-CCCCEEcCCCCCCcCh
Confidence            55432222344667777777777766543  45677888888888888 677754444 4444 88888888888 8887


Q ss_pred             chHHHHHhcCC-CCcEEEccCC--CCC-hHHHHHhhCCCCCcEEEccCCc-cCcchhccccchhhhhhHHhhccCCcCCE
Q 007082          341 AGVGILAGHLP-NLEILSLSGT--QID-DYAISYMSMMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLER  415 (619)
Q Consensus       341 ~~~~~~~~~~~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  415 (619)
                      ......++.++ +|++|++++|  .++ +..+..+..+++|++|++++|. +++..+.            .+..+++|++
T Consensus       184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~------------~l~~l~~L~~  251 (336)
T 2ast_B          184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ------------EFFQLNYLQH  251 (336)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG------------GGGGCTTCCE
T ss_pred             HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH------------HHhCCCCCCE
Confidence            65455556788 8999999888  566 4455667788899999999888 6655555            6788889999


Q ss_pred             EEccCCC-CCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCC
Q 007082          416 LNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK  480 (619)
Q Consensus       416 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  480 (619)
                      |++++|. +.......+..+++|+.|++++| ++......+.  .+++.|++++|++++..|..+.
T Consensus       252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred             eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence            9999884 44333346778889999999988 5554333332  2355556888999887776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.6e-23  Score=200.78  Aligned_cols=203  Identities=18%  Similarity=0.241  Sum_probs=169.0

Q ss_pred             CCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEcc
Q 007082          280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS  359 (619)
Q Consensus       280 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  359 (619)
                      .+..+.+..+.+........+++|+.|++++|.++...  .+..+ ++|++|++++|.+++..  .+ +.+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~l~~l-~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVRYLALGGNKLHDIS--AL-KELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT--TGGGC-TTCCEEECTTSCCCCCG--GG-TTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccccccccccceeeeeeCCCCccccc--ccccC-CCCcEEECCCCCCCCch--hh-cCCCCCCEEECC
Confidence            34445555665555555666778888888888776532  34444 88888888888887753  23 678999999999


Q ss_pred             CCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCE
Q 007082          360 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH  439 (619)
Q Consensus       360 ~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  439 (619)
                      +|.+++..+..+..+++|++|++++|++++..+.            .|..+++|++|++++|.+++..+..+..+++|+.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHH------------HhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence            9999988877788999999999999999887776            6889999999999999999887777889999999


Q ss_pred             EecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH
Q 007082          440 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA  500 (619)
Q Consensus       440 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  500 (619)
                      |++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|+|.
T Consensus       162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            9999999999888888999999999999999999888888889999999999999999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=3.1e-22  Score=194.03  Aligned_cols=163  Identities=19%  Similarity=0.315  Sum_probs=127.7

Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      +..+++|++|++++|.++......+..+ ++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..|..+++
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  134 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVFDSLTK  134 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSC-TTCCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCC-CCCCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence            4445556666666655554443333334 667777777777666544333 56888999999999888887777888999


Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      |++|++++|.+++..+.            .|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.
T Consensus       135 L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKG------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD  202 (270)
T ss_dssp             CCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             CCEEECCCCcCCccCHh------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence            99999999999877666            688899999999999999987777888999999999999999998887888


Q ss_pred             CCCCCCEEEcCCCccCc
Q 007082          457 SLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       457 ~l~~L~~L~L~~n~l~~  473 (619)
                      .+++|+.|+|++|++..
T Consensus       203 ~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          203 SLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TCTTCCEEECCSSCBCC
T ss_pred             cccCCCEEEecCCCeeC
Confidence            99999999999998753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.5e-22  Score=197.12  Aligned_cols=182  Identities=19%  Similarity=0.242  Sum_probs=140.1

Q ss_pred             ccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCc
Q 007082          277 ETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLE  354 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  354 (619)
                      .+++|++|++++|.++..  ..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+.....+ +.+++|+
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~  127 (276)
T 2z62_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPI-GHLKTLK  127 (276)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTSCCCCSTTCCC-TTCTTCC
T ss_pred             cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC-ccccEEECCCCCccccCchhc-ccCCCCC
Confidence            444555555555555444  246667788888888887777666666665 788888888888877644333 6689999


Q ss_pred             EEEccCCCCChH-HHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCC----EEEccCCCCCCCCcc
Q 007082          355 ILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE----RLNLEQTQVSDATLF  429 (619)
Q Consensus       355 ~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~  429 (619)
                      +|++++|.+++. .+..+..+++|++|++++|++++..+.            .+..+++|+    +|++++|.+++..+.
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~l~l~L~ls~n~l~~~~~~  195 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT------------DLRVLHQMPLLNLSLDLSLNPMNFIQPG  195 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG------------GGHHHHTCTTCCEEEECCSSCCCEECTT
T ss_pred             EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH------------HhhhhhhccccceeeecCCCcccccCcc
Confidence            999999998874 367788999999999999999887665            555555555    899999999866555


Q ss_pred             cccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082          430 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       430 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  473 (619)
                      .+. ..+|+.|++++|.+++.++..|..+++|+.|++++|+++.
T Consensus       196 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          196 AFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             SSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            554 4589999999999999888888999999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.6e-22  Score=196.25  Aligned_cols=196  Identities=17%  Similarity=0.232  Sum_probs=130.3

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      .+++|+.|++++|.++..+.+..+++|++|++++|.+++.  ..+..+ ++|++|++++|.+++..+..+ +.+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEE
Confidence            4456666666666666655566666777777777666653  233333 667777777777766544333 456777777


Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      ++++|.+++..+..+..+++|++|++++|++++..+.            .+..+++|++|++++|++++..+..+..+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ  182 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH------------HhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence            7777777766666666777777777777777766555            5667777777777777777666666677777


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  495 (619)
                      |++|++++|.+++..+..+..+++|+.|++++|++.+.       ++.++.++++.|.+
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH  234 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred             CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence            77777777777776666677777777777777766532       34566666655554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=4.2e-21  Score=192.74  Aligned_cols=221  Identities=18%  Similarity=0.228  Sum_probs=124.5

Q ss_pred             CCcEEEcCCccccccccccCCC--CCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCEE
Q 007082          232 SLECLNLSNCTIDSILEGNENK--APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHL  306 (619)
Q Consensus       232 ~L~~L~l~~~~l~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L  306 (619)
                      .++.++++++.+.  +..+..+  ++++.|++++|.+.+..+.  ...+++|++|++++|.++..   ..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3677777777665  2233333  5677777777666655443  22456666666666665432   345556666666


Q ss_pred             eCcCCCCChhHHHHHHhcCCCCcEEEccCC-CCCCchHHHHHhcCCCCcEEEccCC-CCChH-HHHHhhCCC-CCcEEEc
Q 007082          307 DLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEILSLSGT-QIDDY-AISYMSMMP-SLKFIDI  382 (619)
Q Consensus       307 ~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~L  382 (619)
                      ++++|.+++..+..+..+ ++|++|++++| .+++......++.+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus       124 ~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             eCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            666666666555555554 66666666666 4554333333355666666666666 66553 344455566 6666666


Q ss_pred             cCC--ccC-cchhccccchhhhhhHHhhccCCcCCEEEccCCC-CCCCCcccccCCCCCCEEecCCC-CCCchhHHhhcC
Q 007082          383 SNT--DIK-GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSS  457 (619)
Q Consensus       383 ~~n--~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  457 (619)
                      ++|  .++ +.++.            .+..+++|++|++++|. +++..+..+..+++|++|++++| .++......+..
T Consensus       203 ~~~~~~~~~~~l~~------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~  270 (336)
T 2ast_B          203 SGYRKNLQKSDLST------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  270 (336)
T ss_dssp             CSCGGGSCHHHHHH------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             CCCcccCCHHHHHH------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc
Confidence            666  333 22333            44556666666666665 45455555555666666666666 333332234555


Q ss_pred             CCCCCEEEcCCC
Q 007082          458 LSKLTNLSIRDA  469 (619)
Q Consensus       458 l~~L~~L~L~~n  469 (619)
                      +++|+.|++++|
T Consensus       271 ~~~L~~L~l~~~  282 (336)
T 2ast_B          271 IPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTS
T ss_pred             CCCCCEEeccCc
Confidence            566666666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.2e-21  Score=198.34  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             EEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhH----hhhcCCC-CCcEEEccCCCCChhHHHHhhcC-----C
Q 007082           95 LNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGM----KHLLSIS-TLEKLWLSETGLTADGIALLSSL-----Q  164 (619)
Q Consensus        95 L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~----~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~  164 (619)
                      ++++++. ++...+..+...++|++|+|++| .+++..+    ..+..++ +|++|++++|.+++..+..+..+     +
T Consensus         3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCT-TCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccc-chHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4555554 55444444444445666666666 4554444    4445555 56666666666655444444332     5


Q ss_pred             CCCEEEcCCCCCChhHHHHh----hcC-CCCCEEEccCCccCchhh
Q 007082          165 NLSVLDLGGLPVTDLVLRSL----QVL-TKLEYLDLWGSQVSNRGA  205 (619)
Q Consensus       165 ~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~i~~~~~  205 (619)
                      +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            56666666665554443332    222 555556655555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=9.9e-22  Score=199.07  Aligned_cols=196  Identities=17%  Similarity=0.171  Sum_probs=139.5

Q ss_pred             EeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHH----HHhhCCC-CCCEEeCCCCCCCChhhHhhhcCC-----
Q 007082           70 IELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSAL----WALTGMT-CLKELDLSRCVKVTDAGMKHLLSI-----  139 (619)
Q Consensus        70 L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~~l~~~~-~L~~L~L~~~~~l~~~~~~~l~~l-----  139 (619)
                      +++++|. +.+..+..+...++|++|+|++|. +++...    .++.+++ +|++|+|++| .+++..+..++.+     
T Consensus         3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EECCCCT-TCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSC
T ss_pred             ccccccc-chHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccC
Confidence            5778877 777788777777779999999987 766655    6677888 8999999999 6776666666653     


Q ss_pred             CCCcEEEccCCCCChhHHHH----hhcC-CCCCEEEcCCCCCChhHHHHhh----c-CCCCCEEEccCCccCchh----h
Q 007082          140 STLEKLWLSETGLTADGIAL----LSSL-QNLSVLDLGGLPVTDLVLRSLQ----V-LTKLEYLDLWGSQVSNRG----A  205 (619)
Q Consensus       140 ~~L~~L~L~~~~~~~~~~~~----~~~l-~~L~~L~L~~n~~~~~~~~~~~----~-l~~L~~L~l~~n~i~~~~----~  205 (619)
                      ++|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++..    +
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            89999999999988766553    4445 8999999999998877665553    3 368999999999888543    3


Q ss_pred             HhhcCCC-CCCEEecCCCCCCCCC---------CC-CCCcEEEcCCccccc-----cccccCC-CCCccEEeccCccccc
Q 007082          206 AVLKMFP-RLSFLNLAWTGVTKLP---------NI-SSLECLNLSNCTIDS-----ILEGNEN-KAPLAKISLAGTTFIN  268 (619)
Q Consensus       206 ~~~~~~~-~L~~L~l~~n~l~~l~---------~l-~~L~~L~l~~~~l~~-----l~~~~~~-~~~L~~L~l~~~~~~~  268 (619)
                      ..+...+ +|++|++++|.++...         .+ ++|++|++++|.+..     ++..+.. .++|++|++++|.+..
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            4445554 7778877777776433         23 366777777666664     4444443 3356666666555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=3.7e-21  Score=189.90  Aligned_cols=193  Identities=20%  Similarity=0.311  Sum_probs=140.4

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      .+++|+.|++++|.+..++.+..+++|++|++++|.+++..+  +..+ ++|++|++++|++++..  . +..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLKNVS--A-IAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCSCCG--G-GTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCCCch--h-hcCCCCCCEE
Confidence            456677777777777666667777777777777777776554  4444 77888888887777653  2 3567788888


Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      ++++|.+++..+  +..+++|++|++++|.+++..              .+..+++|++|++++|.+++..+  +..+++
T Consensus       113 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~  174 (308)
T 1h6u_A          113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--------------PLAGLTNLQYLSIGNAQVSDLTP--LANLSK  174 (308)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             ECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc--------------cccCCCCccEEEccCCcCCCChh--hcCCCC
Confidence            888888777542  677888888888888776543              35677788888888888775433  777788


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      |+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++.+
T Consensus       175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            8888888888877654  6778888888888888877653  6677888888888887744

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=1.1e-21  Score=183.48  Aligned_cols=166  Identities=17%  Similarity=0.212  Sum_probs=148.9

Q ss_pred             cEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhc
Q 007082          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ  408 (619)
Q Consensus       329 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~  408 (619)
                      +.++.+++.++..+. .   -.++|+.|++++|.+++..+..|..+++|++|+|++|++++..+.            .|.
T Consensus        14 ~~v~c~~~~l~~iP~-~---l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~------------~~~   77 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-N---LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD------------AFQ   77 (220)
T ss_dssp             TEEECTTSCCSSCCS-S---CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT------------TTT
T ss_pred             CEEEcCCCCcCcCCC-c---cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH------------Hhh
Confidence            567788887777532 2   246899999999999988887889999999999999999988887            899


Q ss_pred             cCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEE
Q 007082          409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL  488 (619)
Q Consensus       409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  488 (619)
                      ++++|++|+|++|.++...+..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            99999999999999997777778999999999999999999999999999999999999999999988889999999999


Q ss_pred             EcCCCccCCHHHHHHHHHhCCC
Q 007082          489 DLHGGWLLTEDAILQFCKMHPR  510 (619)
Q Consensus       489 ~l~~n~~~~~~~~~~~~~~~~~  510 (619)
                      ++++|+|.|+|.+.|+.+|...
T Consensus       158 ~L~~N~~~c~c~l~~l~~~l~~  179 (220)
T 2v9t_B          158 HLAQNPFICDCHLKWLADYLHT  179 (220)
T ss_dssp             ECCSSCEECSGGGHHHHHHHHH
T ss_pred             EeCCCCcCCCCccHHHHHHHHh
Confidence            9999999999999999887643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1.9e-21  Score=181.79  Aligned_cols=167  Identities=18%  Similarity=0.201  Sum_probs=146.8

Q ss_pred             CcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH-HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHh
Q 007082          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA  406 (619)
Q Consensus       328 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~  406 (619)
                      -+.+++++|.++..+. .   -.+.+++|++++|++++..+ ..|..+++|++|++++|++++..+.            .
T Consensus        13 ~~~l~~s~n~l~~iP~-~---~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------~   76 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-H---IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG------------A   76 (220)
T ss_dssp             TTEEECCSSCCSSCCS-C---CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT------------T
T ss_pred             CCEeEeCCCCcccCcc-C---CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH------------H
Confidence            3578888888776532 2   24567899999999888743 4578899999999999999988777            7


Q ss_pred             hccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCc
Q 007082          407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK  486 (619)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  486 (619)
                      |.++++|++|+|++|++++..+..|..+++|++|+|++|.++++.+..|..+++|+.|+|++|++++..|..|..+++|+
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            99999999999999999988888899999999999999999999899999999999999999999999899999999999


Q ss_pred             EEEcCCCccCCHHHHHHHHHhCCC
Q 007082          487 LLDLHGGWLLTEDAILQFCKMHPR  510 (619)
Q Consensus       487 ~l~l~~n~~~~~~~~~~~~~~~~~  510 (619)
                      .|++++|+|.|+|.+.++.+|...
T Consensus       157 ~L~L~~N~l~c~c~l~~l~~~~~~  180 (220)
T 2v70_A          157 TLNLLANPFNCNCYLAWLGEWLRK  180 (220)
T ss_dssp             EEECCSCCEECSGGGHHHHHHHHH
T ss_pred             EEEecCcCCcCCCchHHHHHHHHh
Confidence            999999999999999998887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.1e-21  Score=194.27  Aligned_cols=226  Identities=15%  Similarity=0.109  Sum_probs=162.8

Q ss_pred             CccEEeccCccccch--hHHHhhhccCCCcEEeccCCCcchh--hhh--hcCCCCCEEeCcCCCCChhHH----HHHHhc
Q 007082          255 PLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CFL--TQMKALEHLDLSSSMIGDDSV----EMVACV  324 (619)
Q Consensus       255 ~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~--~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~~  324 (619)
                      .++.+.+.++.+...  ........+++|++|++++|.+.+.  ..+  ..+++|++|++++|.+++..+    ..+...
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            345555555554421  1122233456688888888887655  333  778889999999988876322    223333


Q ss_pred             CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHH----HHhhCCCCCcEEEccCCccCcchhccccchhh
Q 007082          325 GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDL  400 (619)
Q Consensus       325 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~  400 (619)
                       ++|++|++++|++++..+..+ +.+++|++|++++|++.+...    ..+..+++|++|++++|+++...+..      
T Consensus       145 -~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~------  216 (310)
T 4glp_A          145 -PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC------  216 (310)
T ss_dssp             -SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH------
T ss_pred             -cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH------
Confidence             899999999999988766555 678999999999999876421    12357889999999999986432210      


Q ss_pred             hhhHHhhccCCcCCEEEccCCCCCCCCcccccCC---CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhc
Q 007082          401 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLG  477 (619)
Q Consensus       401 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  477 (619)
                         ...+..+++|++|+|++|++++..|..+..+   ++|++|+|++|+++.+ |..+.  ++|++|+|++|++++. | 
T Consensus       217 ---~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~-~-  288 (310)
T 4glp_A          217 ---AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRA-P-  288 (310)
T ss_dssp             ---HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSC-C-
T ss_pred             ---HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCC-c-
Confidence               0025788999999999999998877777766   6999999999999865 44443  7999999999999975 2 


Q ss_pred             cCCCCCCCcEEEcCCCccC
Q 007082          478 SFKPPRSLKLLDLHGGWLL  496 (619)
Q Consensus       478 ~~~~~~~L~~l~l~~n~~~  496 (619)
                      .+..+++|+.|++++|++.
T Consensus       289 ~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          289 QPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CTTSCCCCSCEECSSTTTS
T ss_pred             hhhhCCCccEEECcCCCCC
Confidence            2567799999999999985

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=5.9e-21  Score=186.52  Aligned_cols=201  Identities=15%  Similarity=0.178  Sum_probs=131.4

Q ss_pred             CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeC
Q 007082          229 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL  308 (619)
Q Consensus       229 ~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  308 (619)
                      .++++++++++++.++.+|..+.  ++++.|++++|.+...++. .+..+++|+.|++++|.++.++....+        
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l--------   76 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTL--------   76 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCC--------
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCC--------
Confidence            34455555555555555554443  3555555555555443322 122334444444444433333222233        


Q ss_pred             cCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC
Q 007082          309 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  388 (619)
Q Consensus       309 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~  388 (619)
                                       ++|+.|++++|+++... .. +..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus        77 -----------------~~L~~L~Ls~N~l~~l~-~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           77 -----------------PVLGTLDLSHNQLQSLP-LL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             -----------------TTCCEEECCSSCCSSCC-CC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             -----------------CcCCEEECCCCcCCcCc-hh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence                             55555555555555432 11 245788888888888888777777888888888888888888


Q ss_pred             cchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCC
Q 007082          389 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  468 (619)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  468 (619)
                      +..+.            .|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++.+ |..+...++|+.++|++
T Consensus       138 ~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          138 TLPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             CCCTT------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCS
T ss_pred             ccChh------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCC
Confidence            77666            678888888999998888876666778888899999999988864 44556677889999998


Q ss_pred             CccC
Q 007082          469 AVLT  472 (619)
Q Consensus       469 n~l~  472 (619)
                      |++.
T Consensus       205 Np~~  208 (290)
T 1p9a_G          205 NPWL  208 (290)
T ss_dssp             CCBC
T ss_pred             CCcc
Confidence            8875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=7.5e-21  Score=188.27  Aligned_cols=226  Identities=16%  Similarity=0.149  Sum_probs=179.0

Q ss_pred             CCCCcEEEcCCccccc--cccc--cCCCCCccEEeccCccccchhHHHhh-hccCCCcEEeccCCCcchh------hhhh
Q 007082          230 ISSLECLNLSNCTIDS--ILEG--NENKAPLAKISLAGTTFINEREAFLY-IETSLLSFLDVSNSSLSRF------CFLT  298 (619)
Q Consensus       230 l~~L~~L~l~~~~l~~--l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~------~~~~  298 (619)
                      ...++.+.+.++.+..  +...  ....++|++|++++|.+.+..+...+ ..+++|++|++++|.++..      ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3457888888877652  2111  11457799999999999876554322 6789999999999999863      2345


Q ss_pred             cCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchH---HHHHhcCCCCcEEEccCCCCChHHHH---Hhh
Q 007082          299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSLSGTQIDDYAIS---YMS  372 (619)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~  372 (619)
                      .+++|++|++++|.+++..+..+..+ ++|++|++++|++.+...   ....+.+++|++|++++|+++.....   .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            79999999999999988777777666 999999999999876321   22235789999999999999854432   357


Q ss_pred             CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccC---CcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCc
Q 007082          373 MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL---NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD  449 (619)
Q Consensus       373 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  449 (619)
                      .+++|++|++++|++++..|.            .+..+   ++|++|+|++|+++ .+|..+.  ++|++|+|++|++++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~------------~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNP------------SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCS------------CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchh------------hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence            899999999999999988665            45555   79999999999999 5676663  899999999999998


Q ss_pred             hhHHhhcCCCCCCEEEcCCCccCc
Q 007082          450 VSLHQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       450 ~~~~~~~~l~~L~~L~L~~n~l~~  473 (619)
                      ..  .+..+++|+.|+|++|+++.
T Consensus       287 ~~--~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          287 AP--QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC--CTTSCCCCSCEECSSTTTSC
T ss_pred             Cc--hhhhCCCccEEECcCCCCCC
Confidence            63  36789999999999999975

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=2.3e-20  Score=184.17  Aligned_cols=152  Identities=26%  Similarity=0.463  Sum_probs=99.4

Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      +..+++|++|++++|.+++..  .+..+ ++|+.|++++|++++...   ++.+++|++|++++|.+++..+  +..+++
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~  152 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVS--AIAGL-QSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTN  152 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG--GGTTC-TTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             HccCCCCCEEEccCCcCCCch--hhcCC-CCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCC
Confidence            344444555555555444321  23333 556666666665555432   2556777777777777766544  667777


Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      |++|++++|++++..              .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +.
T Consensus       153 L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~  214 (308)
T 1h6u_A          153 LQYLSIGNAQVSDLT--------------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LA  214 (308)
T ss_dssp             CCEEECCSSCCCCCG--------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GT
T ss_pred             ccEEEccCCcCCCCh--------------hhcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--cc
Confidence            777777777776532              35677788888888888775433  6778888888888888887653  77


Q ss_pred             CCCCCCEEEcCCCccCch
Q 007082          457 SLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       457 ~l~~L~~L~L~~n~l~~~  474 (619)
                      .+++|+.|++++|++++.
T Consensus       215 ~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TCTTCCEEEEEEEEEECC
T ss_pred             CCCCCCEEEccCCeeecC
Confidence            788888888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=2.2e-21  Score=196.19  Aligned_cols=185  Identities=19%  Similarity=0.220  Sum_probs=155.5

Q ss_pred             CEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082          304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (619)
Q Consensus       304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  383 (619)
                      +.++++++.++..+. .   ..+.++.|++++|++++.....+...+++|++|++++|++++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~iP~-~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-S---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCS-S---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCc-c---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            467777777765332 1   226688899999988887665543268999999999999999888889999999999999


Q ss_pred             CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhh---cCCCC
Q 007082          384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSK  460 (619)
Q Consensus       384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~  460 (619)
                      +|++++..+.            .|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++++.+..|   ..+++
T Consensus        97 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           97 SNHLHTLDEF------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             SSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             CCcCCcCCHH------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            9999887776            78999999999999999998888899999999999999999999877777   56999


Q ss_pred             CCEEEcCCCccCchhhccCCCCCC--CcEEEcCCCccCCHHHHHHH
Q 007082          461 LTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTEDAILQF  504 (619)
Q Consensus       461 L~~L~L~~n~l~~~~~~~~~~~~~--L~~l~l~~n~~~~~~~~~~~  504 (619)
                      |+.|+|++|+|++..+..+..++.  ++.|++++|||.|+|.+.++
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~  210 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL  210 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence            999999999999877777766766  48899999999999998875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=2.3e-20  Score=178.66  Aligned_cols=181  Identities=20%  Similarity=0.253  Sum_probs=150.4

Q ss_pred             CCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEc
Q 007082          279 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL  358 (619)
Q Consensus       279 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  358 (619)
                      ...+.++++++.++.++.- -.++++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+ ..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEEC
Confidence            3455666666666655321 12578888888888887766666666 889999999998888766554 66899999999


Q ss_pred             cCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCC
Q 007082          359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI  438 (619)
Q Consensus       359 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  438 (619)
                      ++|.+++..+..|..+++|++|++++|++++..+.            .|..+++|++|+|++|++++..+..|..+++|+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence            99999988888888999999999999999887776            688999999999999999987777899999999


Q ss_pred             EEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082          439 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       439 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      +|+|++|++++..+..|..+++|+.|++++|+++..
T Consensus       159 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            999999999998888899999999999999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=6.5e-21  Score=181.16  Aligned_cols=195  Identities=14%  Similarity=0.208  Sum_probs=140.1

Q ss_pred             CCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCC-CChhHHHHHHhcCCCCcEEEccC-CCCCCchHHHHHhcCCCCcE
Q 007082          280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSN-TRFSSAGVGILAGHLPNLEI  355 (619)
Q Consensus       280 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~  355 (619)
                      +++.|++++|.++.+  ..+..+++|++|++++|. ++...+..+..+ ++|++|++++ |+++...+..+ +.+++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDAL-KELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSE-ECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHh-CCCCCCCE
Confidence            445555555555444  245566777777777775 665555455444 7777777777 77776654444 56788888


Q ss_pred             EEccCCCCChHHHHHhhCCCCCc---EEEccCC-ccCcchhccccchhhhhhHHhhccCCcCC-EEEccCCCCCCCCccc
Q 007082          356 LSLSGTQIDDYAISYMSMMPSLK---FIDISNT-DIKGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFP  430 (619)
Q Consensus       356 L~l~~n~l~~~~~~~~~~~~~L~---~L~L~~n-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~  430 (619)
                      |++++|.+++.+ . +..+++|+   +|++++| .+++..+.            .|.++++|+ +|++++|+++...+..
T Consensus       110 L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~------------~~~~l~~L~~~L~l~~n~l~~i~~~~  175 (239)
T 2xwt_C          110 LGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVN------------AFQGLCNETLTLKLYNNGFTSVQGYA  175 (239)
T ss_dssp             EEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTT------------TTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred             EeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcc------------cccchhcceeEEEcCCCCCcccCHhh
Confidence            888888887743 2 67777777   8889888 88776665            688888999 9999999888444444


Q ss_pred             ccCCCCCCEEecCCCC-CCchhHHhhcCC-CCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCc
Q 007082          431 LSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  494 (619)
Q Consensus       431 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~  494 (619)
                      |.. ++|+.|++++|+ ++++.+..|..+ ++|+.|++++|++++..+.   .+++|+.|++++++
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            544 789999999994 888877888888 8999999999998865443   45788888888775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.6e-20  Score=178.55  Aligned_cols=195  Identities=12%  Similarity=0.143  Sum_probs=137.1

Q ss_pred             CccEEeccCccccchhHHHhhhccCCCcEEeccCCC-cchh--hhhhcCCCCCEEeCcC-CCCChhHHHHHHhcCCCCcE
Q 007082          255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-LSRF--CFLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRN  330 (619)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~  330 (619)
                      ++++|++++|.+..+++. .+..+++|++|++++|. ++.+  ..+..+++|++|++++ |.+++..+..+..+ ++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-TTCCE
T ss_pred             cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-CCCCE
Confidence            344444444444433331 22344555555555554 4444  2456677777777776 77776555555554 77888


Q ss_pred             EEccCCCCCCchHHHHHhcCCCCc---EEEccCC-CCChHHHHHhhCCCCCc-EEEccCCccCcchhccccchhhhhhHH
Q 007082          331 LNLSNTRFSSAGVGILAGHLPNLE---ILSLSGT-QIDDYAISYMSMMPSLK-FIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       331 L~L~~n~l~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      |++++|++++...   ++.+++|+   +|++++| .+++..+..|..+++|+ +|++++|+++...+.            
T Consensus       110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~------------  174 (239)
T 2xwt_C          110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY------------  174 (239)
T ss_dssp             EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT------------
T ss_pred             EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh------------
Confidence            8888887777432   35677787   9999999 88888777788899999 999999998854443            


Q ss_pred             hhccCCcCCEEEccCCC-CCCCCcccccCC-CCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCc
Q 007082          406 ALQNLNHLERLNLEQTQ-VSDATLFPLSTF-KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV  470 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  470 (619)
                      .|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|+++++++.   .+++|+.|+++++.
T Consensus       175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence            4555 789999999994 887777788888 9999999999999886544   57789999998764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=2.4e-19  Score=168.70  Aligned_cols=166  Identities=20%  Similarity=0.208  Sum_probs=143.5

Q ss_pred             CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      ...+.++.+++.++..+.    +-.++|++|++++|.+++..+..|..+++|++|+|++|++....+.            
T Consensus        19 Cs~~~v~c~~~~l~~ip~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~------------   82 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPA----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG------------   82 (229)
T ss_dssp             EETTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred             EeCCEeEccCCCcCccCC----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh------------
Confidence            346678888888777643    2358899999999999998888899999999999999999877666            


Q ss_pred             hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  485 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  485 (619)
                      .|..+++|++|+|++|++++..+..|..+++|++|+|++|+++. +|..+..+++|+.|+|++|++++..+..+..+++|
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  161 (229)
T 3e6j_A           83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL  161 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            78999999999999999998877888999999999999999996 46678999999999999999998887888899999


Q ss_pred             cEEEcCCCccCCHHH-HHHHHHhC
Q 007082          486 KLLDLHGGWLLTEDA-ILQFCKMH  508 (619)
Q Consensus       486 ~~l~l~~n~~~~~~~-~~~~~~~~  508 (619)
                      +.|++++|+|.|+|. +.++..|.
T Consensus       162 ~~L~l~~N~~~c~c~~~~~l~~~~  185 (229)
T 3e6j_A          162 THAYLFGNPWDCECRDIMYLRNWV  185 (229)
T ss_dssp             CEEECTTSCBCTTBGGGHHHHHHH
T ss_pred             CEEEeeCCCccCCcchhHHHHHHH
Confidence            999999999999995 55555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.8e-19  Score=174.83  Aligned_cols=181  Identities=21%  Similarity=0.324  Sum_probs=97.8

Q ss_pred             cCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChH
Q 007082          287 SNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY  366 (619)
Q Consensus       287 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~  366 (619)
                      ..+.+........+++|++|++++|.+.+..  .+..+ ++|+.|++++|++++..+   +..+++|++|++++|.+++.
T Consensus        32 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           32 KKKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             TCSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG
T ss_pred             cCCCcccccchhhcCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC
Confidence            3333333333344455555555555554331  23333 555555555555555433   24456666666666665553


Q ss_pred             HHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC
Q 007082          367 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS  446 (619)
Q Consensus       367 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  446 (619)
                      .  .+..+++|++|++++|++++.  .            .+..+++|++|++++|++++.  ..+..+++|+.|++++|.
T Consensus       106 ~--~l~~l~~L~~L~L~~n~i~~~--~------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A          106 S--SLKDLKKLKSLSLEHNGISDI--N------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             G--GGTTCTTCCEEECTTSCCCCC--G------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             h--hhccCCCCCEEECCCCcCCCC--h------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence            2  255566666666666665543  1            355556666666666666543  445556666666666666


Q ss_pred             CCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082          447 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       447 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  495 (619)
                      +++..+  +..+++|+.|++++|.+++..  .+..+++|+.|++++|++
T Consensus       168 l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          168 ISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEE
T ss_pred             cccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcc
Confidence            665543  555666666666666665532  255556666666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.2e-18  Score=170.40  Aligned_cols=174  Identities=24%  Similarity=0.307  Sum_probs=150.0

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      .+++|+.|++++|.+..++.+..+++|++|++++|.+++..+  +..+ ++|+.|++++|.+++...   ++.+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLSS---LKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGGG---GTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCCcCCCChh---hccCCCCCEE
Confidence            567888888888888888778889999999999999887665  5555 899999999999988533   3679999999


Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      ++++|.+++.  ..+..+++|++|++++|++++.  .            .+..+++|++|++++|.+++..+  +..+++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~------------~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  179 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTK  179 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h------------hhccCCCCCEEEccCCccccchh--hcCCCc
Confidence            9999999886  3578899999999999999876  3            68899999999999999997655  889999


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  476 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  476 (619)
                      |+.|++++|.++++.  .+..+++|+.|++++|+++....
T Consensus       180 L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          180 LQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             cCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCcc
Confidence            999999999999864  48999999999999999986543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=3e-18  Score=158.93  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=131.8

Q ss_pred             CcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  407 (619)
Q Consensus       328 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~  407 (619)
                      -+.++.+++.++....    +..++|++|++++|++++..+..+..+++|++|++++|++++..+.            .|
T Consensus         9 ~~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~   72 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------VF   72 (208)
T ss_dssp             TTEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------TT
T ss_pred             CCEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------hc
Confidence            3566777777766532    2356899999999998887777788899999999999999877665            67


Q ss_pred             ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcE
Q 007082          408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL  487 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  487 (619)
                      ..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence            88999999999999998777777888999999999999999888777888999999999999999887777888899999


Q ss_pred             EEcCCCccCCHHH
Q 007082          488 LDLHGGWLLTEDA  500 (619)
Q Consensus       488 l~l~~n~~~~~~~  500 (619)
                      |++++|++.|+|.
T Consensus       153 L~l~~N~~~~~~~  165 (208)
T 2o6s_A          153 IWLHDNPWDCTCP  165 (208)
T ss_dssp             EECCSCCBCCCTT
T ss_pred             EEecCCCeecCCC
Confidence            9999999988774

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=1.2e-18  Score=159.14  Aligned_cols=145  Identities=15%  Similarity=0.199  Sum_probs=126.9

Q ss_pred             cEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082          354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST  433 (619)
Q Consensus       354 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  433 (619)
                      +.+++++|+++..+. .+  .++|++|++++|++++..+..           .|..+++|++|+|++|++++..|..|..
T Consensus        11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   76 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDG-----------LFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSC-----------SGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCcc-----------ccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence            678888888866542 22  348999999999998776541           4889999999999999999988999999


Q ss_pred             CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCee
Q 007082          434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE  512 (619)
Q Consensus       434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  512 (619)
                      +++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|+|.|+|.+.++..|.....
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~  155 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS  155 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcC
Confidence            9999999999999999988889999999999999999999999999999999999999999999999998887765443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.4e-18  Score=184.28  Aligned_cols=193  Identities=22%  Similarity=0.279  Sum_probs=155.2

Q ss_pred             CccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEcc
Q 007082          255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS  334 (619)
Q Consensus       255 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  334 (619)
                      .+..+.+..+.+.....   ...++.|+.|++++|.+..++.+..+++|+.|+|++|.+.+..+  +..+ ++|+.|+|+
T Consensus        22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECC
T ss_pred             HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECc
Confidence            34555566666555433   34678899999999999888888899999999999999887665  5555 899999999


Q ss_pred             CCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCC
Q 007082          335 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE  414 (619)
Q Consensus       335 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  414 (619)
                      +|.+.+..  .+ ..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++.  .            .+..+++|+
T Consensus        96 ~N~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~------------~l~~l~~L~  156 (605)
T 1m9s_A           96 ENKIKDLS--SL-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLD  156 (605)
T ss_dssp             SSCCCCCT--TS-TTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G------------GGGSCTTCS
T ss_pred             CCCCCCCh--hh-ccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h------------hhcccCCCC
Confidence            99988753  23 6688999999999998875  3478899999999999998875  2            578889999


Q ss_pred             EEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082          415 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  476 (619)
Q Consensus       415 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  476 (619)
                      .|+|++|.+.+..|  +..+++|+.|+|++|.++++  ..+..+++|+.|+|++|++++...
T Consensus       157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             EEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            99999999987665  88889999999999999885  368889999999999998877543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=2e-18  Score=157.51  Aligned_cols=141  Identities=15%  Similarity=0.203  Sum_probs=124.3

Q ss_pred             cEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccC
Q 007082          354 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST  433 (619)
Q Consensus       354 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  433 (619)
                      +.+++++|.++..+..   -.++|++|++++|+++. +|.            .|.++++|++|+|++|.+++..+..|..
T Consensus        13 ~~l~~~~~~l~~ip~~---~~~~l~~L~L~~n~i~~-ip~------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~   76 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG---IPRDVTELYLDGNQFTL-VPK------------ELSNYKHLTLIDLSNNRISTLSNQSFSN   76 (193)
T ss_dssp             TEEECTTSCCSSCCSC---CCTTCCEEECCSSCCCS-CCG------------GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CEEEcCCCCCCcCCCC---CCCCCCEEECCCCcCch-hHH------------HhhcccCCCEEECCCCcCCEeCHhHccC
Confidence            5788888888765422   24689999999999974 445            7899999999999999999888888999


Q ss_pred             CCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCC
Q 007082          434 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR  510 (619)
Q Consensus       434 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~  510 (619)
                      +++|++|+|++|.++++.+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+|.|+|.+.|+..|...
T Consensus        77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~  153 (193)
T 2wfh_A           77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS  153 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHh
Confidence            99999999999999999988999999999999999999988887898999999999999999999999999888653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=1.2e-18  Score=161.62  Aligned_cols=162  Identities=17%  Similarity=0.182  Sum_probs=107.0

Q ss_pred             CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEE
Q 007082          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFI  380 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  380 (619)
                      ++|++|++++|.+++.....+..+ ++|++|++++|++++..+..+ +.+++|++|++++|.+++..+..+..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhc-CCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            456666666666665444444444 666667766666665543333 456777777777777776665556677777777


Q ss_pred             EccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCC
Q 007082          381 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK  460 (619)
Q Consensus       381 ~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  460 (619)
                      ++++|++++..+.            .|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+       .+++
T Consensus       106 ~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~  166 (208)
T 2o6s_A          106 ALNTNQLQSLPDG------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPG  166 (208)
T ss_dssp             ECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTT
T ss_pred             EcCCCcCcccCHh------------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCC
Confidence            7777777766555            56677777777777777776655556777777777777776554       3456


Q ss_pred             CCEEEcCCCccCchhhccCCCCC
Q 007082          461 LTNLSIRDAVLTNSGLGSFKPPR  483 (619)
Q Consensus       461 L~~L~L~~n~l~~~~~~~~~~~~  483 (619)
                      |+.|+++.|+++|.+|..++.++
T Consensus       167 l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          167 IRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             THHHHHHHHHCTTTBBCTTSSBC
T ss_pred             HHHHHHHHHhCCceeeccCcccc
Confidence            77777777777777776665443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1.4e-18  Score=162.38  Aligned_cols=155  Identities=16%  Similarity=0.219  Sum_probs=133.8

Q ss_pred             CEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082          304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (619)
Q Consensus       304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  383 (619)
                      +.+++++|.++..+. .   ....+++|++++|.+++..+...++.+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus        14 ~~l~~s~n~l~~iP~-~---~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-H---IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCS-C---CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCcc-C---CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            477777777765322 1   125678899999988887544444679999999999999999888889999999999999


Q ss_pred             CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCE
Q 007082          384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  463 (619)
Q Consensus       384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  463 (619)
                      +|++++..+.            .|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.
T Consensus        90 ~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  157 (220)
T 2v70_A           90 SNRLENVQHK------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST  157 (220)
T ss_dssp             SSCCCCCCGG------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred             CCccCccCHh------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence            9999988877            7999999999999999999988999999999999999999999998999999999999


Q ss_pred             EEcCCCccCch
Q 007082          464 LSIRDAVLTNS  474 (619)
Q Consensus       464 L~L~~n~l~~~  474 (619)
                      |+|++|++...
T Consensus       158 L~L~~N~l~c~  168 (220)
T 2v70_A          158 LNLLANPFNCN  168 (220)
T ss_dssp             EECCSCCEECS
T ss_pred             EEecCcCCcCC
Confidence            99999998753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1e-17  Score=179.38  Aligned_cols=172  Identities=24%  Similarity=0.292  Sum_probs=112.8

Q ss_pred             CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEE
Q 007082          252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL  331 (619)
Q Consensus       252 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  331 (619)
                      .+++|+.|++++|.+..++.   +..+++|+.|++++|.+..++.+..+++|+.|++++|.+.+..  .+..+ ++|+.|
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l-~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDL-KKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTC-TTCCEE
T ss_pred             cCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccC-CCCCEE
Confidence            45667777777777666542   4456777777777777766655677777777777777766532  33443 677777


Q ss_pred             EccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCC
Q 007082          332 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN  411 (619)
Q Consensus       332 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~  411 (619)
                      +|++|.+.+..  .+ ..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..|              +..++
T Consensus       115 ~Ls~N~l~~l~--~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--------------l~~l~  175 (605)
T 1m9s_A          115 SLEHNGISDIN--GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--------------LAGLT  175 (605)
T ss_dssp             ECTTSCCCCCG--GG-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--------------GTTCT
T ss_pred             EecCCCCCCCc--cc-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--------------hccCC
Confidence            77777776642  22 4567777777777777665  346677777777777777765432              45667


Q ss_pred             cCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          412 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       412 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                      +|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.
T Consensus       176 ~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          176 KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            777777777777653  3466677777777777766554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=2e-18  Score=182.75  Aligned_cols=134  Identities=20%  Similarity=0.276  Sum_probs=76.7

Q ss_pred             CCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCC
Q 007082          232 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS  311 (619)
Q Consensus       232 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n  311 (619)
                      +++.|++++|.+..+|..++  ++|+.|++++|.+..++     ..+++|+.|++++|.+++++.+..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence            78888888888888877664  67888888888777655     134666666666666655533222  5566666665


Q ss_pred             CCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC
Q 007082          312 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK  388 (619)
Q Consensus       312 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~  388 (619)
                      .+++...     .+++|+.|++++|.+++.+.     .+++|++|++++|.+++.+.  +.  ++|++|+|++|+++
T Consensus       131 ~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          131 QLTMLPE-----LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSCCCC-----CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred             cCCCCCC-----cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC
Confidence            5554222     12555555555555554321     24455555555555544222  22  45555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=2.1e-18  Score=173.68  Aligned_cols=243  Identities=15%  Similarity=0.082  Sum_probs=149.3

Q ss_pred             CEEecCCCCCCCCCC-C-CCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc
Q 007082          215 SFLNLAWTGVTKLPN-I-SSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL  291 (619)
Q Consensus       215 ~~L~l~~n~l~~l~~-l-~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  291 (619)
                      +.++.++++++++|. + +++++|++++|.++.+++..+ ++++|++|++++|.+.+..+..                  
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~------------------   73 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD------------------   73 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT------------------
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh------------------
Confidence            345566666666653 2 457777777777777666433 5666666666666654433222                  


Q ss_pred             chhhhhhcCCCCCE-EeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccC-CCCChHHHH
Q 007082          292 SRFCFLTQMKALEH-LDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-TQIDDYAIS  369 (619)
Q Consensus       292 ~~~~~~~~~~~L~~-L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~  369 (619)
                          .|.+++++++ +.+.+|.++...+..+..+ ++|+.|++++|+++......+ ....++..|++.+ +.+....+.
T Consensus        74 ----~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l-~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~  147 (350)
T 4ay9_X           74 ----VFSNLPKLHEIRIEKANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERN  147 (350)
T ss_dssp             ----SBCSCTTCCEEEEEEETTCCEECTTSBCCC-TTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTT
T ss_pred             ----HhhcchhhhhhhcccCCcccccCchhhhhc-cccccccccccccccCCchhh-cccchhhhhhhcccccccccccc
Confidence                3344444443 3334455555544444444 666666666666665433332 2345666777765 456665555


Q ss_pred             HhhCC-CCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccC-CCCCCCCcccccCCCCCCEEecCCCCC
Q 007082          370 YMSMM-PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASL  447 (619)
Q Consensus       370 ~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l  447 (619)
                      .|..+ ..++.|++++|+++...+.            .| ...+|++|++++ |.++...+..|..+++|++|+|++|++
T Consensus       148 ~f~~~~~~l~~L~L~~N~i~~i~~~------------~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNGIQEIHNS------------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTT------------SS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred             chhhcchhhhhhccccccccCCChh------------hc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence            55554 3578888888888765444            33 446788888875 566655556788889999999999998


Q ss_pred             CchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHH
Q 007082          448 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED  499 (619)
Q Consensus       448 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~  499 (619)
                      +.+++..|   .+|+.|.+.++.--...| .+..+++|+.+++. +++.|.|
T Consensus       215 ~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~-~~~~c~~  261 (350)
T 4ay9_X          215 HSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLT-YPSHCCA  261 (350)
T ss_dssp             CCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS-CHHHHHH
T ss_pred             CccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCC-CCccccc
Confidence            88765444   456666655543223334 46778899999986 5555633

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=1.4e-18  Score=174.94  Aligned_cols=234  Identities=15%  Similarity=0.131  Sum_probs=129.3

Q ss_pred             CEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-----CCCCCcEEEcCCcccc-ccccccC-CCCCccE-Eecc
Q 007082          191 EYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTID-SILEGNE-NKAPLAK-ISLA  262 (619)
Q Consensus       191 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-----~l~~L~~L~l~~~~l~-~l~~~~~-~~~~L~~-L~l~  262 (619)
                      ++++.++++++. +|..+  .+++++|+|++|+++.++     ++++|++|++++|.+. .++...+ +++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            678888888875 44444  368999999999998654     6899999999999975 4666555 7777765 5556


Q ss_pred             CccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccC-CCCCCc
Q 007082          263 GTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN-TRFSSA  341 (619)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~  341 (619)
                      +|.+..+++. .+..+++|++|++++|.+...+.                      ..+... .++..+++.+ +.+...
T Consensus        89 ~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~~-~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           89 ANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPD----------------------VHKIHS-LQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             ETTCCEECTT-SBCCCTTCCEEEEEEECCSSCCC----------------------CTTCCB-SSCEEEEEESCTTCCEE
T ss_pred             CCcccccCch-hhhhccccccccccccccccCCc----------------------hhhccc-chhhhhhhccccccccc
Confidence            6777766543 24455666666666665554421                      111111 2334444433 233333


Q ss_pred             hHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccC-CccCcchhccccchhhhhhHHhhccCCcCCEEEccC
Q 007082          342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN-TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ  420 (619)
Q Consensus       342 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  420 (619)
                      ....+.+....++.|++++|+++...+..| ...+|++|++++ |.++...+.            .|.++++|++|++++
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~------------~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPND------------VFHGASGPVILDISR  211 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTT------------TTTTEECCSEEECTT
T ss_pred             cccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHH------------HhccCcccchhhcCC
Confidence            222222222345555566655555443333 234555566554 333332222            455666666666666


Q ss_pred             CCCCCCCcccccCCCCCCEEecCCC-CCCchhHHhhcCCCCCCEEEcCCC
Q 007082          421 TQVSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDA  469 (619)
Q Consensus       421 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  469 (619)
                      |+++...+..   +.+|+.|.+.++ .++..+  .+..+++|+.+++.++
T Consensus       212 N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          212 TRIHSLPSYG---LENLKKLRARSTYNLKKLP--TLEKLVALMEASLTYP  256 (350)
T ss_dssp             SCCCCCCSSS---CTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSCH
T ss_pred             CCcCccChhh---hccchHhhhccCCCcCcCC--CchhCcChhhCcCCCC
Confidence            6665433322   333444443333 233322  3555666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=8e-18  Score=157.15  Aligned_cols=153  Identities=15%  Similarity=0.204  Sum_probs=129.6

Q ss_pred             CEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082          304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (619)
Q Consensus       304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  383 (619)
                      +.++++++.++..+. .   ..++++.|++++|.+++..+..+ ..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus        14 ~~v~c~~~~l~~iP~-~---l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-N---LPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSSCCS-S---CCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCcCCC-c---cCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            456666666654322 1   12678888888888887755554 668999999999999999888889999999999999


Q ss_pred             CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCE
Q 007082          384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  463 (619)
Q Consensus       384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  463 (619)
                      +|+++...+.            .|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++++.+..|..+++|+.
T Consensus        89 ~N~l~~l~~~------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           89 GNKITELPKS------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             SSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCcCCccCHh------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            9999877666            6889999999999999999988999999999999999999999998888999999999


Q ss_pred             EEcCCCccCc
Q 007082          464 LSIRDAVLTN  473 (619)
Q Consensus       464 L~L~~n~l~~  473 (619)
                      |+|++|++..
T Consensus       157 L~L~~N~~~c  166 (220)
T 2v9t_B          157 MHLAQNPFIC  166 (220)
T ss_dssp             EECCSSCEEC
T ss_pred             EEeCCCCcCC
Confidence            9999998853

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2.3e-17  Score=151.32  Aligned_cols=149  Identities=18%  Similarity=0.249  Sum_probs=90.2

Q ss_pred             CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      ++|+.|++++|.+++..  .+ ..+++|++|++++|.++...  .+..+++|++|++++|++++..+.            
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~------------  106 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GI-EYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIP------------  106 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TG-GGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSC------------
T ss_pred             CCccEEeccCCCccChH--HH-hcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccCh------------
Confidence            55666666666665433  12 44666666666666555432  455666666666666666655444            


Q ss_pred             hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC-CCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCC
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRS  484 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  484 (619)
                      .+..+++|++|++++|++++..+..+..+++|++|++++|. ++...  .+..+++|+.|++++|++++..  .+..+++
T Consensus       107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~  182 (197)
T 4ezg_A          107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPK  182 (197)
T ss_dssp             CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred             hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence            46666666666666666665556666666666666666665 55532  4666666666666666666532  4555666


Q ss_pred             CcEEEcCCCcc
Q 007082          485 LKLLDLHGGWL  495 (619)
Q Consensus       485 L~~l~l~~n~~  495 (619)
                      |+.|++++|++
T Consensus       183 L~~L~l~~N~i  193 (197)
T 4ezg_A          183 LNQLYAFSQTI  193 (197)
T ss_dssp             CCEEEECBC--
T ss_pred             CCEEEeeCccc
Confidence            66666666664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=4.8e-17  Score=149.21  Aligned_cols=154  Identities=22%  Similarity=0.359  Sum_probs=131.6

Q ss_pred             hcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCC
Q 007082          298 TQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL  377 (619)
Q Consensus       298 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  377 (619)
                      ..+++|++|++++|.+++..  .+..+ ++|++|++++|.++...  .+ ..+++|++|++++|.+++..+..++.+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            56789999999999998644  45555 99999999999887753  33 679999999999999998777889999999


Q ss_pred             cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCC-CCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      ++|++++|++++..+.            .+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++..  .+.
T Consensus       115 ~~L~Ls~n~i~~~~~~------------~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~  178 (197)
T 4ezg_A          115 TLLDISHSAHDDSILT------------KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIE  178 (197)
T ss_dssp             CEEECCSSBCBGGGHH------------HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGG
T ss_pred             CEEEecCCccCcHhHH------------HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--Hhc
Confidence            9999999999987776            79999999999999998 66 444 6889999999999999999854  788


Q ss_pred             CCCCCCEEEcCCCccCc
Q 007082          457 SLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       457 ~l~~L~~L~L~~n~l~~  473 (619)
                      .+++|+.|++++|++.+
T Consensus       179 ~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          179 DFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GCSSCCEEEECBC----
T ss_pred             cCCCCCEEEeeCcccCC
Confidence            99999999999999864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.2e-17  Score=166.54  Aligned_cols=102  Identities=21%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             CCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCC-EEecCCCCCCchhH
Q 007082          374 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSL  452 (619)
Q Consensus       374 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~  452 (619)
                      +++|+.+++++|+++...+.            +|.+|++|+.+++.+| ++.....+|.++++|+ .+++.+ .++.+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~------------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~  290 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDF------------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF  290 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTT------------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred             cCCCeEEECCCCCcceecHh------------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence            55555555555555444333            5555666666666555 4444455555666665 666655 5555555


Q ss_pred             HhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEE
Q 007082          453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLD  489 (619)
Q Consensus       453 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~  489 (619)
                      ..|.+|++|+.+++++|+++......|..+++|+.+.
T Consensus       291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5666666666666666666665555666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=8.4e-18  Score=169.92  Aligned_cols=175  Identities=22%  Similarity=0.282  Sum_probs=129.7

Q ss_pred             EEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHH-hcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCC
Q 007082          283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA-CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT  361 (619)
Q Consensus       283 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  361 (619)
                      .++++++.++.++. .-.+.++.|++++|.+++.....+. .+ ++|+.|++++|++++..+..+ ..+++|++|++++|
T Consensus        22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCCccChhhc-cCCCCCCEEECCCC
Confidence            44555555544421 1124567777777777766555554 44 778888888888877655544 56888888888888


Q ss_pred             CCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc---cCCCCCC
Q 007082          362 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL---STFKELI  438 (619)
Q Consensus       362 ~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~  438 (619)
                      +++...+..|..+++|++|+|++|++++..+.            .|.++++|+.|+|++|++++..+..|   ..+++|+
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN------------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHH------------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence            88887777788888899999999888877776            78888899999999998886555555   5688899


Q ss_pred             EEecCCCCCCchhHHhhcCCCC--CCEEEcCCCccC
Q 007082          439 HLSLRNASLTDVSLHQLSSLSK--LTNLSIRDAVLT  472 (619)
Q Consensus       439 ~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~  472 (619)
                      .|+|++|+++.+.+..+..++.  ++.|+|++|++.
T Consensus       167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9999999988888788888877  488899998875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=2.9e-17  Score=173.82  Aligned_cols=192  Identities=16%  Similarity=0.176  Sum_probs=126.2

Q ss_pred             CCCEEecCCCCCCCCCC--CCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC
Q 007082          213 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (619)
Q Consensus       213 ~L~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  290 (619)
                      +++.|++++|.+++++.  .++|++|++++|.++.+|   ..+++|+.|++++|.+.+++. +  .  .+|+.|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l--~--~~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L--P--ASLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C--C--TTCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h--h--cCCCEEECCCCc
Confidence            77888888887777663  467888888888877777   346778888888887777655 2  1  278888888887


Q ss_pred             cchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHH
Q 007082          291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY  370 (619)
Q Consensus       291 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  370 (619)
                      +++++.  .+++|+.|++++|.+++...     .+++|+.|++++|++++.+.  + .  ++|+.|++++|.++..+.  
T Consensus       132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~--l-~--~~L~~L~Ls~N~L~~lp~--  197 (571)
T 3cvr_A          132 LTMLPE--LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE--L-P--ESLEALDVSTNLLESLPA--  197 (571)
T ss_dssp             CSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--C-C--TTCCEEECCSSCCSSCCC--
T ss_pred             CCCCCC--cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--h-h--CCCCEEECcCCCCCchhh--
Confidence            777655  67778888888887776332     22678888888887777433  3 2  778888888887764321  


Q ss_pred             hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCch
Q 007082          371 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV  450 (619)
Q Consensus       371 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  450 (619)
                      +..  +|                             +...+.|+.|+|++|+++ .+|..+..+++|+.|+|++|.+++.
T Consensus       198 ~~~--~L-----------------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          198 VPV--RN-----------------------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             CC---------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             HHH--hh-----------------------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            211  11                             112234566677776666 3455555677777777777777776


Q ss_pred             hHHhhcCC
Q 007082          451 SLHQLSSL  458 (619)
Q Consensus       451 ~~~~~~~l  458 (619)
                      .|..+..+
T Consensus       246 ~p~~l~~l  253 (571)
T 3cvr_A          246 IRESLSQQ  253 (571)
T ss_dssp             HHHHHHHH
T ss_pred             CHHHHHHh
Confidence            66666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.5e-17  Score=159.74  Aligned_cols=166  Identities=25%  Similarity=0.328  Sum_probs=103.6

Q ss_pred             CCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 007082          303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI  382 (619)
Q Consensus       303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  382 (619)
                      +..++++++.+++..  .+..+ ++|+.|++++|.++...  .+ +.+++|++|++++|++++..+  +..+++|++|++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            444445555554433  22233 56666666666665543  22 456677777777777666554  666777777777


Q ss_pred             cCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCC
Q 007082          383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT  462 (619)
Q Consensus       383 ~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  462 (619)
                      ++|++++..+.              .. ++|++|++++|++++.  ..+..+++|+.|++++|++++..  .+..+++|+
T Consensus        93 ~~N~l~~l~~~--------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~  153 (263)
T 1xeu_A           93 NRNRLKNLNGI--------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLE  153 (263)
T ss_dssp             CSSCCSCCTTC--------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCC
T ss_pred             CCCccCCcCcc--------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCC
Confidence            77776653321              22 6777777777777653  34667777777777777777653  566677777


Q ss_pred             EEEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          463 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       463 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      .|++++|++++.  ..+..+++|+.|++++|++.+
T Consensus       154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             EEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            777777777765  456666777777777777644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.1e-17  Score=160.82  Aligned_cols=172  Identities=17%  Similarity=0.252  Sum_probs=138.1

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      .+.++..++++++.++.+..+..+++|++|++++|.++...  .+..+ ++|+.|++++|++++..+   ++.+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~L~~N~i~~~~~---l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFF-TNLKELHLSHNQISDLSP---LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG---GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhC-CCCCEEECCCCccCCChh---hccCCCCCEE
Confidence            34556666777777777666777888888888888877643  44555 888899998888888755   3678999999


Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      ++++|++++..+  +.. ++|++|++++|++++. +             .+..+++|++|++++|++++.  ..+..+++
T Consensus        91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~-------------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~  151 (263)
T 1xeu_A           91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-D-------------SLIHLKNLEILSIRNNKLKSI--VMLGFLSK  151 (263)
T ss_dssp             ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-G-------------GGTTCTTCCEEECTTSCCCBC--GGGGGCTT
T ss_pred             ECCCCccCCcCc--ccc-CcccEEEccCCccCCC-h-------------hhcCcccccEEECCCCcCCCC--hHHccCCC
Confidence            999999887543  333 8999999999998874 2             578899999999999999864  36888999


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchh
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG  475 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  475 (619)
                      |+.|++++|.+++.  ..+..+++|+.|++++|++++..
T Consensus       152 L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            99999999999987  57888999999999999988663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4e-17  Score=153.48  Aligned_cols=154  Identities=18%  Similarity=0.245  Sum_probs=129.3

Q ss_pred             CCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEc
Q 007082          303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDI  382 (619)
Q Consensus       303 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  382 (619)
                      .+.++.+++.++.....    ..++|+.|++++|.+++..+..+ +.+++|++|++++|+++...+..|..+++|++|+|
T Consensus        21 ~~~v~c~~~~l~~ip~~----~~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG----IPTNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCSSCCSC----CCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCcCccCCC----CCCCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            45666666666543321    12788888888888888766555 66899999999999998887777889999999999


Q ss_pred             cCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCC
Q 007082          383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT  462 (619)
Q Consensus       383 ~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  462 (619)
                      ++|++++..+.            .|..+++|++|+|++|+++ .+|..+..+++|++|+|++|+++++.+..|..+++|+
T Consensus        96 s~N~l~~l~~~------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  162 (229)
T 3e6j_A           96 GTNQLTVLPSA------------VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT  162 (229)
T ss_dssp             CSSCCCCCCTT------------TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCcCCccChh------------HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            99999987776            7889999999999999998 6788889999999999999999998888899999999


Q ss_pred             EEEcCCCccCch
Q 007082          463 NLSIRDAVLTNS  474 (619)
Q Consensus       463 ~L~L~~n~l~~~  474 (619)
                      .|++++|++...
T Consensus       163 ~L~l~~N~~~c~  174 (229)
T 3e6j_A          163 HAYLFGNPWDCE  174 (229)
T ss_dssp             EEECTTSCBCTT
T ss_pred             EEEeeCCCccCC
Confidence            999999998754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=1.4e-16  Score=143.46  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=120.8

Q ss_pred             CcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccccc
Q 007082          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  432 (619)
Q Consensus       353 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  432 (619)
                      .+.+++++++++..+.   ...++|++|++++|++++..+.            .|..+++|++|++++|.+++..+..|.
T Consensus         9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~   73 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHG------------VFDKLTQLTKLSLSQNQIQSLPDGVFD   73 (177)
T ss_dssp             TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHH------------HhcCcccccEEECCCCcceEeChhHcc
Confidence            5678888888776542   2347899999999998877666            678899999999999999977777788


Q ss_pred             CCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhCC
Q 007082          433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHP  509 (619)
Q Consensus       433 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~  509 (619)
                      .+++|++|++++|.+++.++..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|. +.++..|..
T Consensus        74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~  151 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  151 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred             CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHh
Confidence            99999999999999999888888999999999999999998877778889999999999999999996 666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=6e-17  Score=161.52  Aligned_cols=280  Identities=16%  Similarity=0.163  Sum_probs=206.9

Q ss_pred             CCCCCEEEcCCCCCChhHHHHhhc-CCCCCEEEccCCccC--chhhHhhcCCCCCCEEecCCCCCCC--CCC--------
Q 007082          163 LQNLSVLDLGGLPVTDLVLRSLQV-LTKLEYLDLWGSQVS--NRGAAVLKMFPRLSFLNLAWTGVTK--LPN--------  229 (619)
Q Consensus       163 l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~--l~~--------  229 (619)
                      ++++++|.++++ +.......+.. +++|++|+|++|++.  ......+   +.+..+.+..+.+..  +.+        
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~~~aF~~~~~~~~~g   99 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVPAYAFSNVVNGVTKG   99 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccCHHHhcccccccccc
Confidence            457888998875 44444455655 899999999999987  2222222   224555555555542  446        


Q ss_pred             CCCCcEEEcCCccccccccccC-CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc----chh--hhhhcCCC
Q 007082          230 ISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL----SRF--CFLTQMKA  302 (619)
Q Consensus       230 l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l----~~~--~~~~~~~~  302 (619)
                      +++|+++++.+ .++.+++..| ++++|+++++.+|.+..++.. +|..+.++..+....+..    ..+  ..|..+..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            89999999999 8888988777 899999999999988876654 456677777777665322    111  34556777


Q ss_pred             CC-EEeCcCCCCChhHHHHHHhc---CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCc
Q 007082          303 LE-HLDLSSSMIGDDSVEMVACV---GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (619)
Q Consensus       303 L~-~L~l~~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  378 (619)
                      |+ .+.+....-   .+..+...   ..+++.+.+.++ +.......+...|++|+.+++++|+++.....+|.++.+|+
T Consensus       178 L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          178 LETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             cceeEEecCCCc---HHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            77 555554321   22222211   157778888765 44444555555699999999999999999889999999999


Q ss_pred             EEEccCCccCcchhccccchhhhhhHHhhccCCcCC-EEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082          379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS  457 (619)
Q Consensus       379 ~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  457 (619)
                      .+++.+| +....+.            +|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++++|.++.+....|.+
T Consensus       254 ~l~l~~n-i~~I~~~------------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~  319 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQR------------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN  319 (329)
T ss_dssp             EEECCTT-CCEECTT------------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred             EEECCcc-cceehHH------------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence            9999998 6655555            899999999 999999 777777899999999999999999999999999999


Q ss_pred             CCCCCEEEc
Q 007082          458 LSKLTNLSI  466 (619)
Q Consensus       458 l~~L~~L~L  466 (619)
                      +++|+.++.
T Consensus       320 ~~~L~~ly~  328 (329)
T 3sb4_A          320 GVPSKLIYK  328 (329)
T ss_dssp             TCCCCEEEC
T ss_pred             Ccchhhhcc
Confidence            999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=8e-18  Score=179.17  Aligned_cols=208  Identities=14%  Similarity=0.144  Sum_probs=132.1

Q ss_pred             CCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCc-chhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCc
Q 007082          251 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR  329 (619)
Q Consensus       251 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  329 (619)
                      ..+++|+.|++++|.+..+|..+  ..+++|+.|++++|.. ...+..     +     ..+...+..+..+..+ ++|+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i--~~l~~L~~L~l~~n~~l~~l~~l-----l-----~~~~~~~~~~~~l~~l-~~L~  412 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSEL--ESCKELQELEPENKWCLLTIILL-----M-----RALDPLLYEKETLQYF-STLK  412 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHH--HHHHHHHHHCTTCHHHHHHHHHH-----H-----HHHCTGGGHHHHHHHH-HHHH
T ss_pred             ccCccceeccCChhhHHhhHHHH--HHHHHHHHhccccchhhhhHHHH-----H-----HhcccccCCHHHHHHH-Hhcc
Confidence            35666667777777666665543  3555666666644321 000000     0     0011334445555554 6666


Q ss_pred             EEE-ccCCCCCCch--------HHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhh
Q 007082          330 NLN-LSNTRFSSAG--------VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL  400 (619)
Q Consensus       330 ~L~-L~~n~l~~~~--------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~  400 (619)
                      .|+ ++.|.+.+..        ...+  ....|+.|++++|.+++.+ . ++.+++|+.|++++|.++ .+|.       
T Consensus       413 ~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~-~lp~-------  480 (567)
T 1dce_A          413 AVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR-ALPP-------  480 (567)
T ss_dssp             HHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-CCCG-------
T ss_pred             cCcchhhcccchhhhhhhhccccccc--CccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccc-ccch-------
Confidence            666 4444332211        1111  1235888888888888753 3 778888888888888887 4565       


Q ss_pred             hhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchh-HHhhcCCCCCCEEEcCCCccCchhhcc-
Q 007082          401 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLGS-  478 (619)
Q Consensus       401 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-  478 (619)
                           .+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|+|++|++++..+.. 
T Consensus       481 -----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          481 -----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             -----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             -----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence                 67888888888888888886 45 7888888888888888888876 778888888888888888888764422 


Q ss_pred             --CCCCCCCcEEEc
Q 007082          479 --FKPPRSLKLLDL  490 (619)
Q Consensus       479 --~~~~~~L~~l~l  490 (619)
                        +..+++|+.|++
T Consensus       554 ~l~~~lp~L~~L~l  567 (567)
T 1dce_A          554 RLAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHHCTTCSEEEC
T ss_pred             HHHHHCcccCccCC
Confidence              122577777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=3e-18  Score=182.49  Aligned_cols=207  Identities=18%  Similarity=0.190  Sum_probs=153.0

Q ss_pred             CCCCCCcEEEcCCccccccccccCCCCCccEEeccCcccc-chhHHHhhhccCCCcEEeccCCCcchh-hhhhcCCCCCE
Q 007082          228 PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFI-NEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEH  305 (619)
Q Consensus       228 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L~~  305 (619)
                      ..+++|+.|++++|.+..+|+.+..+++|++|++++|... ..+....        .+    +..... ..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~--------~~----~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR--------AL----DPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HH----CTGGGHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH--------hc----ccccCCHHHHHHHHhccc
Confidence            3578899999999999999999999999999999776421 1111000        00    000111 33445555555


Q ss_pred             Ee-CcCCCCChh--------HHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          306 LD-LSSSMIGDD--------SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       306 L~-l~~n~l~~~--------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      |+ ++.|.+...        ....+..  ..|+.|++++|.+++.+ . + +.+++|+.|++++|.++. .|..++.+++
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~lp-~-~-~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~  487 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTVLC-H-L-EQLLLVTHLDLSHNRLRA-LPPALAALRC  487 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSSCC-C-G-GGGTTCCEEECCSSCCCC-CCGGGGGCTT
T ss_pred             CcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCCCCCCc-C-c-cccccCcEeecCcccccc-cchhhhcCCC
Confidence            55 343332221        1122222  57999999999999864 3 3 779999999999999995 4668899999


Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC-cccccCCCCCCEEecCCCCCCchhH---
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL---  452 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---  452 (619)
                      |++|+|++|++++. |             .+..+++|++|+|++|++++.. |..+..+++|+.|+|++|.+++.++   
T Consensus       488 L~~L~Ls~N~l~~l-p-------------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          488 LEVLQASDNALENV-D-------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             CCEEECCSSCCCCC-G-------------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             CCEEECCCCCCCCC-c-------------ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence            99999999999874 3             4889999999999999999887 9999999999999999999988754   


Q ss_pred             HhhcCCCCCCEEEc
Q 007082          453 HQLSSLSKLTNLSI  466 (619)
Q Consensus       453 ~~~~~l~~L~~L~L  466 (619)
                      ..+..+++|+.|++
T Consensus       554 ~l~~~lp~L~~L~l  567 (567)
T 1dce_A          554 RLAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHHCTTCSEEEC
T ss_pred             HHHHHCcccCccCC
Confidence            23455899999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=6.2e-16  Score=134.87  Aligned_cols=129  Identities=22%  Similarity=0.317  Sum_probs=88.1

Q ss_pred             CCCCcEEEccCCCCC-hHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc
Q 007082          350 LPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  428 (619)
Q Consensus       350 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  428 (619)
                      .++|+.|++++|.++ +..+..+..+++|++|++++|.+++.  .            .+..+++|++|++++|.+++.+|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------NLPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------TCCCCTTCCEEECCSSCCCSCTH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------hhhcCCCCCEEECCCCcccchHH
Confidence            456777777777766 34444556677777777777777655  2            56677777777777777776666


Q ss_pred             ccccCCCCCCEEecCCCCCCch-hHHhhcCCCCCCEEEcCCCccCchhh---ccCCCCCCCcEEEcCC
Q 007082          429 FPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHG  492 (619)
Q Consensus       429 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~  492 (619)
                      ..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|++++
T Consensus        82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            6666677777777777777774 33667777777777777777776544   3556667777777653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=6.8e-16  Score=137.63  Aligned_cols=131  Identities=21%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             CCCcEEEccCCCCC-hHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcc
Q 007082          351 PNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF  429 (619)
Q Consensus       351 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  429 (619)
                      ++|+.|++++|.++ +..+..+..+++|++|++++|.+++.  .            .+..+++|++|++++|.+++..|.
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~N~l~~~~~~   89 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S------------NLPKLPKLKKLELSENRIFGGLDM   89 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S------------SCCCCSSCCEEEEESCCCCSCCCH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h------------hhccCCCCCEEECcCCcCchHHHH
Confidence            44555555555544 22233344455555555555555443  2            344555555555555555544444


Q ss_pred             cccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCchhh---ccCCCCCCCcEEEcCCCcc
Q 007082          430 PLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       430 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~  495 (619)
                      .+..+++|++|++++|.+++... ..+..+++|+.|++++|++++..+   ..+..+++|+.|++++|..
T Consensus        90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            44445555555555555555321 445555555555555555554433   2444455555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=2.9e-15  Score=136.50  Aligned_cols=130  Identities=13%  Similarity=0.241  Sum_probs=89.9

Q ss_pred             cEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHH-HhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  407 (619)
Q Consensus       329 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~  407 (619)
                      +.++++++.++..+. .+   .++|++|++++|.+++..+. .+..+++|++|++++|++++..|.            .|
T Consensus        11 ~~l~~s~~~l~~ip~-~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~   74 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------AF   74 (192)
T ss_dssp             TEEECTTSCCSSCCS-CC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------TT
T ss_pred             CEEEcCCCCcCcCcc-CC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh------------Hc
Confidence            566666666655422 11   33677777777777665543 366777777777777777776666            67


Q ss_pred             ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082          408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      .++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            7777777777777777766666677777777777777777777777777777777777777777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.57  E-value=4.9e-15  Score=131.98  Aligned_cols=117  Identities=21%  Similarity=0.206  Sum_probs=101.5

Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      .+.+++++|.++.....             +  .++|++|+|++|++++..+..|..+++|++|+|++|+++++.+..|.
T Consensus        11 ~~~l~~s~n~l~~ip~~-------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTG-------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             TTEEECTTSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEeCCCCcCccCcc-------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence            46788888888764332             2  37899999999999988888999999999999999999998888899


Q ss_pred             CCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082          457 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH  508 (619)
Q Consensus       457 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~  508 (619)
                      .+++|++|+|++|++++..+..|..+++|+.|++++|+|.|+|. +.++..|.
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l  128 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI  128 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence            99999999999999999888889999999999999999999994 77666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=1.3e-14  Score=147.69  Aligned_cols=261  Identities=9%  Similarity=0.093  Sum_probs=148.8

Q ss_pred             cCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC-----CCCCCCCCcEE
Q 007082          162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-----KLPNISSLECL  236 (619)
Q Consensus       162 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~l~~L~~L  236 (619)
                      .+..++.+.+.. .+..+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.     .+.+|++|+.+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            345566666653 3444444556554 5666666544 555555566553 466666554 222     23345566666


Q ss_pred             EcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChh
Q 007082          237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD  316 (619)
Q Consensus       237 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~  316 (619)
                      ++.+|.+..++...+.+.+|+.+.+..+ +..+..                       ..|..+++|+.+.+..+ ++..
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~-----------------------~aF~~~~~L~~l~l~~~-l~~I  240 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGS-----------------------QAFLKTSQLKTIEIPEN-VSTI  240 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECT-----------------------TTTTTCTTCCCEECCTT-CCEE
T ss_pred             ecCCCcceEechhhEeecccCEEEeCCc-hheehh-----------------------hHhhCCCCCCEEecCCC-ccCc
Confidence            6666666666665555555555555432 222211                       34455555665555442 2222


Q ss_pred             HHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccC-----cch
Q 007082          317 SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK-----GFI  391 (619)
Q Consensus       317 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~  391 (619)
                      ...+|..  .                         +|+.+.+ .+.++.....+|.++++|+.+++.+|.+.     ...
T Consensus       241 ~~~aF~~--~-------------------------~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~  292 (401)
T 4fdw_A          241 GQEAFRE--S-------------------------GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH  292 (401)
T ss_dssp             CTTTTTT--C-------------------------CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred             ccccccc--C-------------------------CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence            2222222  3                         3444444 22233333444555555666655555443     122


Q ss_pred             hccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCcc
Q 007082          392 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  471 (619)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  471 (619)
                      +.            .|.+|++|+.+++.+ .++.....+|.+|.+|+.+.|.++ ++.+....|.++ +|+.+++++|.+
T Consensus       293 ~~------------aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          293 PY------------CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TT------------TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             HH------------HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            22            677888888888874 466566677888888888888554 677777778888 888888888887


Q ss_pred             CchhhccCCCC-CCCcEEEcCCCcc
Q 007082          472 TNSGLGSFKPP-RSLKLLDLHGGWL  495 (619)
Q Consensus       472 ~~~~~~~~~~~-~~L~~l~l~~n~~  495 (619)
                      .......|..+ ..+..|.+..+..
T Consensus       358 ~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          358 PQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cccccccccCCCCCccEEEeCHHHH
Confidence            77666677776 3677888877653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.9e-15  Score=134.73  Aligned_cols=134  Identities=28%  Similarity=0.355  Sum_probs=103.2

Q ss_pred             CCCcEEEccCCCCC-CchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082          326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL  404 (619)
Q Consensus       326 ~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~  404 (619)
                      ++|+.|++++|.++ +..+.. +..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|.           
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-----------   89 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-----------   89 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-----------
Confidence            56777777777776 222322 35578888888888888776  5677888888888888888876666           


Q ss_pred             HhhccCCcCCEEEccCCCCCCCC-cccccCCCCCCEEecCCCCCCchhH---HhhcCCCCCCEEEcCCCccCch
Q 007082          405 TALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       405 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                       .+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+...
T Consensus        90 -~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           90 -LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             -HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             -HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence             6677888999999998888643 2678888899999999998888765   5788889999999999887654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.1e-14  Score=130.92  Aligned_cols=134  Identities=14%  Similarity=0.192  Sum_probs=112.4

Q ss_pred             CCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHh
Q 007082          327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA  406 (619)
Q Consensus       327 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~  406 (619)
                      ..+.+++++++++....    +..++|++|++++|++++..+..+..+++|++|++++|++++..+.            .
T Consensus         8 ~~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~   71 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG------------V   71 (177)
T ss_dssp             ETTEEECCSSCCSSCCT----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------T
T ss_pred             CCCEEEecCCCCccCCC----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh------------H
Confidence            45678888888877642    2357899999999998887777788899999999999999877666            6


Q ss_pred             hccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhh
Q 007082          407 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL  476 (619)
Q Consensus       407 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  476 (619)
                      |..+++|++|++++|++++..+..+..+++|++|++++|.++++++..+..+++|++|++++|++++..+
T Consensus        72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            8889999999999999998777778889999999999999998887778889999999999999887543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.56  E-value=8e-15  Score=149.99  Aligned_cols=332  Identities=14%  Similarity=0.165  Sum_probs=163.6

Q ss_pred             hHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHh
Q 007082          105 SSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL  184 (619)
Q Consensus       105 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  184 (619)
                      ..+..+|.+|.+|+.+.+..  .++.....+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ +..+...+|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence            33444566777777777764  345555566667777777777543 44444556666666666655433 333334455


Q ss_pred             hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccC-CCCCccEEeccC
Q 007082          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAG  263 (619)
Q Consensus       185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~  263 (619)
                      .++..++.....  .+......+|.++++|+.+.+..+.                    ..+....+ ++.+|+.+.+..
T Consensus       137 ~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~--------------------~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          137 KGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM--------------------ETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC--------------------CEECTTTTTTCTTCCBCCCCT
T ss_pred             ecccccccccCc--cccccchhhhcccCCCcEEecCCcc--------------------ceeccccccCCCCceEEEcCC
Confidence            555433222221  1222333455555555555554331                    22222222 344444444433


Q ss_pred             ccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchH
Q 007082          264 TTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV  343 (619)
Q Consensus       264 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  343 (619)
                      + +..+. ...+..+..|+.+.+..+............+|+.+.+... ++......+... ..++.+.+..+.. ....
T Consensus       195 ~-~~~I~-~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~-~i~~  269 (394)
T 4fs7_A          195 N-LKIIR-DYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKL-RIGG  269 (394)
T ss_dssp             T-CCEEC-TTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTC-EECS
T ss_pred             C-ceEeC-chhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcc-eeec
Confidence            2 11111 1223344444444443332221122223344555544332 111111222222 5555555554321 1111


Q ss_pred             HHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCC
Q 007082          344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV  423 (619)
Q Consensus       344 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  423 (619)
                      ..+ ..++.++.+....+.+..   ..|..+.+|+.+.+.++ +...-..            +|.+|.+|+.+++.++ +
T Consensus       270 ~~F-~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~~------------aF~~c~~L~~i~lp~~-v  331 (394)
T 4fs7_A          270 SLF-YNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGEE------------AFESCTSLVSIDLPYL-V  331 (394)
T ss_dssp             CTT-TTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECTT------------TTTTCTTCCEECCCTT-C
T ss_pred             ccc-ccccccceeccCceeecc---ccccccccccccccccc-cceechh------------hhcCCCCCCEEEeCCc-c
Confidence            112 346666666655543322   34556677777766543 3322223            5777777777777543 5


Q ss_pred             CCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEE
Q 007082          424 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL  488 (619)
Q Consensus       424 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  488 (619)
                      +.....+|.+|.+|+.+++..+ ++.+....|.+|++|+.+++..+ ++. ....|..+++|+.+
T Consensus       332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred             cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence            4455566777777777777655 66666667777777777777654 221 12356666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.55  E-value=7.6e-15  Score=147.85  Aligned_cols=187  Identities=17%  Similarity=0.178  Sum_probs=111.3

Q ss_pred             CCCCEEeCcCCCCChhHHHHHHhc----CCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhh----
Q 007082          301 KALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS----  372 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----  372 (619)
                      ++|+.|++++|.+++.....+...    +++|++|+|++|.+++.....+...+++|++|++++|.+++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            456666666666666555444433    146667777777666655555555556677777777777665544442    


Q ss_pred             -CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC----cccccCCCCCCEEecCCCCC
Q 007082          373 -MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASL  447 (619)
Q Consensus       373 -~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l  447 (619)
                       ..++|++|+|++|.++.....        .-...+..+++|++|+|++|.+++..    ...+...++|++|+|++|.+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVA--------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHH--------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             hcCCccceeeCCCCCCChHHHH--------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence             356677777777776542111        00013466777777777777776432    34455667788888888888


Q ss_pred             CchhH----HhhcCCCCCCEEEcCCCccCchhhccCCCC---C--CCcEEE--cCCCcc
Q 007082          448 TDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---R--SLKLLD--LHGGWL  495 (619)
Q Consensus       448 ~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~--~L~~l~--l~~n~~  495 (619)
                      ++...    ..+...++|++|+|++|.|++.....+...   .  .++.+.  +.+|.+
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence            76533    334456888888888888887655444322   2  266666  666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=3.2e-15  Score=130.30  Aligned_cols=128  Identities=25%  Similarity=0.374  Sum_probs=95.8

Q ss_pred             CCCcEEEccCCCCC-CchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhH
Q 007082          326 ANLRNLNLSNTRFS-SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL  404 (619)
Q Consensus       326 ~~L~~L~L~~n~l~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~  404 (619)
                      ++|+.|++++|.++ +..+. .++.+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|.           
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-----------   82 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-----------   82 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-----------
T ss_pred             ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-----------
Confidence            56777777777776 22233 235678888888888888776  5577788888888888888876666           


Q ss_pred             HhhccCCcCCEEEccCCCCCCC-CcccccCCCCCCEEecCCCCCCchhH---HhhcCCCCCCEEEcCC
Q 007082          405 TALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTDVSL---HQLSSLSKLTNLSIRD  468 (619)
Q Consensus       405 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~  468 (619)
                       .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|+.|++++
T Consensus        83 -~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           83 -LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             -HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             -HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence             667788888888888888763 34677888888888888888887665   5778888888888763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=2.1e-14  Score=130.76  Aligned_cols=128  Identities=23%  Similarity=0.222  Sum_probs=109.3

Q ss_pred             cEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhc
Q 007082          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ  408 (619)
Q Consensus       329 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~  408 (619)
                      +.++++++.++..+. .   -.++|++|++++|.++..+ ..|..+++|++|++++|++++..+.            .|.
T Consensus        13 ~~l~~~~~~l~~ip~-~---~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~------------~f~   75 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK-G---IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQ------------SFS   75 (193)
T ss_dssp             TEEECTTSCCSSCCS-C---CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTT------------TTT
T ss_pred             CEEEcCCCCCCcCCC-C---CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHh------------Hcc
Confidence            567788887776532 1   2468999999999988654 6788899999999999999888777            789


Q ss_pred             cCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCc
Q 007082          409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  473 (619)
                      ++++|++|+|++|.+++..+..|..+++|+.|+|++|.++.+.+..|..+++|+.|++++|++..
T Consensus        76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999999999999998888889999999999999999999888889999999999999998863

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.53  E-value=2e-14  Score=147.02  Aligned_cols=325  Identities=12%  Similarity=0.126  Sum_probs=207.8

Q ss_pred             HHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhc
Q 007082           83 MAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSS  162 (619)
Q Consensus        83 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  162 (619)
                      ..+|.+|.+|+.+.|...  ++.....+|.+|++|+.+++..+  ++.....+|.+++.|+.+.+..+ +......+|.+
T Consensus        64 ~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             HHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            346889999999999853  66766778999999999999865  56666778889999999877654 55555567777


Q ss_pred             CCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC-----CCCCCCCCcEEE
Q 007082          163 LQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT-----KLPNISSLECLN  237 (619)
Q Consensus       163 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~l~~L~~L~  237 (619)
                      +..++.......  ..+...+|.+|++|+.+.+..+ +......+|.++.+|+.+.+..+ +.     .+.++..|+.+.
T Consensus       139 ~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          139 CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             ccccccccCccc--cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            765444433332  3334467999999999999765 44566678999999998888765 22     233556666666


Q ss_pred             cCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhH
Q 007082          238 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS  317 (619)
Q Consensus       238 l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~  317 (619)
                      +..+. ..+....+...+|+.+.+.... ..+. .                      ..+..+..++.+.+..+.. ...
T Consensus       215 ~~~~~-~~i~~~~~~~~~l~~i~ip~~~-~~i~-~----------------------~~f~~~~~l~~~~~~~~~~-~i~  268 (394)
T 4fs7_A          215 FPNSL-YYLGDFALSKTGVKNIIIPDSF-TELG-K----------------------SVFYGCTDLESISIQNNKL-RIG  268 (394)
T ss_dssp             CCTTC-CEECTTTTTTCCCCEEEECTTC-CEEC-S----------------------STTTTCSSCCEEEECCTTC-EEC
T ss_pred             cCCCc-eEeehhhcccCCCceEEECCCc-eecc-c----------------------ccccccccceeEEcCCCcc-eee
Confidence            55432 2233333444555555554321 1111 1                      2344445555555544321 111


Q ss_pred             HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccc
Q 007082          318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE  397 (619)
Q Consensus       318 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  397 (619)
                      ...+... ..++.+......+.+.    .+..+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++..-..    
T Consensus       269 ~~~F~~~-~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~----  337 (394)
T 4fs7_A          269 GSLFYNC-SGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR----  337 (394)
T ss_dssp             SCTTTTC-TTCCEEEECSSEECTT----TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT----
T ss_pred             ccccccc-cccceeccCceeeccc----cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH----
Confidence            1222222 5566655554433221    2245778888887654 55555667888888888888643 4433333    


Q ss_pred             hhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEE
Q 007082          398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL  464 (619)
Q Consensus       398 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  464 (619)
                              +|.+|.+|+.+++..+ ++.....+|.+|.+|+.+++..+ ++. ....|.++++|+.+
T Consensus       338 --------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          338 --------SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKWI  393 (394)
T ss_dssp             --------TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred             --------hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence                    7888888998888776 66566778888889999988765 222 23467888887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.52  E-value=7.3e-14  Score=142.08  Aligned_cols=193  Identities=13%  Similarity=0.170  Sum_probs=148.0

Q ss_pred             CCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEE
Q 007082          280 LLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS  357 (619)
Q Consensus       280 ~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  357 (619)
                      +|+.+.+.. .++.+  ..|..|++|+.+++..|.++......|.  +.+|+.+.+.++ ++......| ..|++|+.++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCTT-CCEECTTTT-TTCTTCCCEE
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe--ecccCEEEeCCc-hheehhhHh-hCCCCCCEEe
Confidence            355555543 33333  4567777777777777777666555555  278888888744 666555555 6689999999


Q ss_pred             ccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCC-----CCCccccc
Q 007082          358 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-----DATLFPLS  432 (619)
Q Consensus       358 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~  432 (619)
                      +.++ ++.....+|.+ .+|+.+.+. +.++.....            +|.+|++|+.+++.+|.+.     .....+|.
T Consensus       233 l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~------------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~  297 (401)
T 4fdw_A          233 IPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR------------AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE  297 (401)
T ss_dssp             CCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT------------TTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred             cCCC-ccCcccccccc-CCccEEEeC-CCccEEChh------------HhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence            9875 66666677877 799999994 556555455            8999999999999998765     35567899


Q ss_pred             CCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCcc
Q 007082          433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       433 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~  495 (619)
                      +|++|+.++|. +.++.+....|.+|++|+.++|..| ++......|..+ +|+.+++.+|..
T Consensus       298 ~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          298 GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            99999999999 4588888889999999999999655 777888899999 999999999865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=3e-14  Score=127.28  Aligned_cols=116  Identities=19%  Similarity=0.230  Sum_probs=99.0

Q ss_pred             cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082          378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS  457 (619)
Q Consensus       378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  457 (619)
                      +.+++++|.++.. |.            .+  .++|++|+|++|++++..|..|..+++|++|+|++|+++++++..|..
T Consensus        15 ~~l~~~~n~l~~i-P~------------~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A           15 TLVNCQNIRLASV-PA------------GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             SEEECCSSCCSSC-CS------------CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cEEEeCCCCCCcc-CC------------Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence            6788888888654 33            22  278999999999999888889999999999999999999988878899


Q ss_pred             CCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHH-HHHHHHhC
Q 007082          458 LSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMH  508 (619)
Q Consensus       458 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~  508 (619)
                      +++|+.|+|++|++++..+..|..+++|+.|++++|+|.|+|. +.++..|.
T Consensus        80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~  131 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV  131 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHH
T ss_pred             cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHH
Confidence            9999999999999998877778899999999999999999995 66655554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=1.7e-14  Score=129.52  Aligned_cols=132  Identities=22%  Similarity=0.224  Sum_probs=87.2

Q ss_pred             cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc
Q 007082          349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  428 (619)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  428 (619)
                      .+++|+.|++++|+++.. +......++|++|++++|.+++.  .            .+..+++|++|++++|.+++..+
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~------------~l~~l~~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--D------------GFPLLRRLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--C------------CCCCCSSCCEEECCSSCCCEECS
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--c------------ccccCCCCCEEECCCCcccccCc
Confidence            356677777777776654 22222334777777777777654  2            46777777777777777775544


Q ss_pred             ccccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCchhhc---cCCCCCCCcEEEcCCCcc
Q 007082          429 FPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLG---SFKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       429 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~l~l~~n~~  495 (619)
                      ..+..+++|++|++++|.++.... ..+..+++|+.|++++|+++.....   .+..+++|+.||+++|..
T Consensus        82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            445677777777777777766432 3667777788888888877654222   355677788888877764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=3.5e-14  Score=127.43  Aligned_cols=131  Identities=18%  Similarity=0.238  Sum_probs=90.2

Q ss_pred             CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      ++|+.|++++|.++...  .+....++|++|++++|.+++.  ..+..+++|++|++++|++++..+.            
T Consensus        19 ~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------   82 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG------------   82 (176)
T ss_dssp             TSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC------------
T ss_pred             CCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc------------
Confidence            45666666666655431  1223344777777777777765  4566777888888888887766544            


Q ss_pred             hhccCCcCCEEEccCCCCCCCCcc--cccCCCCCCEEecCCCCCCchhHH---hhcCCCCCCEEEcCCCccCc
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLF--PLSTFKELIHLSLRNASLTDVSLH---QLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~  473 (619)
                      .+..+++|++|++++|.++. +|.  .+..+++|+.|++++|.++.....   .+..+++|+.|++++|.+..
T Consensus        83 ~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            56778888888888888763 444  677788888888888887765432   47778888888888887654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=3.7e-13  Score=135.51  Aligned_cols=163  Identities=20%  Similarity=0.230  Sum_probs=116.6

Q ss_pred             HHHhcCCccEEeccCCCCCChHHHHHHhcC-----CCccEEEcCCCCCCChHHHHHhh-CCCCCCEEeCCCCCCCChhhH
Q 007082           60 LEVFKHNAEAIELRGENSVDAEWMAYLGAF-----RYLRSLNVADCRRVTSSALWALT-GMTCLKELDLSRCVKVTDAGM  133 (619)
Q Consensus        60 ~~~~~~~l~~L~Ls~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~~  133 (619)
                      .....++++.|+|++|. ++......+..+     ++|++|+|++|. +++.....+. .+++|++|+|++| .+++...
T Consensus        67 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~  143 (372)
T 3un9_A           67 SAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEAC  143 (372)
T ss_dssp             HHHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHH
T ss_pred             HHHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHH
Confidence            33445679999999988 665544444433     689999999987 7777666655 4678899999998 7777766


Q ss_pred             hhhc-----CCCCCcEEEccCCCCChhHHH----HhhcCCCCCEEEcCCCCCChhH----HHHhhcCCCCCEEEccCCcc
Q 007082          134 KHLL-----SISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQV  200 (619)
Q Consensus       134 ~~l~-----~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~l~~n~i  200 (619)
                      ..++     ..++|++|+|++|.+++....    .+..+++|++|+|++|.+.+..    ...+..+++|++|++++|.+
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence            6653     467899999999988775443    4467888999999998887654    44556778888888888888


Q ss_pred             CchhhH----hhcCCCCCCEEecCCCCCC
Q 007082          201 SNRGAA----VLKMFPRLSFLNLAWTGVT  225 (619)
Q Consensus       201 ~~~~~~----~~~~~~~L~~L~l~~n~l~  225 (619)
                      ++....    .+...++|++|+|++|.++
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            764433    3444566666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=2e-14  Score=157.96  Aligned_cols=214  Identities=12%  Similarity=0.077  Sum_probs=84.3

Q ss_pred             CCCcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCCh---------hHHHHhhcCCCCCEEEccCCccCchhhHhhcC
Q 007082          140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTD---------LVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKM  210 (619)
Q Consensus       140 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~---------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~  210 (619)
                      ++++.|+|.++.+......      .|+.++|+.+.+.+         ..+..+..++.|+.|+|++|.+.. ++..+..
T Consensus       173 ~~~~~l~L~~n~~~~~~~~------~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~  245 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA------LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISANIFK  245 (727)
T ss_dssp             -------------------------------------------------------CCCCCCEEECTTSCCSC-CCGGGGG
T ss_pred             CccceEEeeCCCCCcchhh------HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CChhhcC
Confidence            4566777776666553221      12333333332222         223444555555555555555542 2222224


Q ss_pred             CCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC
Q 007082          211 FPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (619)
Q Consensus       211 ~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  290 (619)
                      +                   ++|++|+|++|.++.+|..+..+++|+.|+|++|.+..+|..  +..+++|++|++++|.
T Consensus       246 l-------------------~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          246 Y-------------------DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE--LGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             C-------------------CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS--GGGGTTCSEEECCSSC
T ss_pred             C-------------------CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh--hcCCCCCCEEECCCCC
Confidence            4                   455555555555555555555566666666666666555432  3356666666666666


Q ss_pred             cchh-hhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCC--------
Q 007082          291 LSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT--------  361 (619)
Q Consensus       291 l~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n--------  361 (619)
                      ++.+ ..+..+++|++|+|++|.+++..+..+......+..+++++|.+++..       ...|+.|+++.|        
T Consensus       305 l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-------p~~l~~l~l~~n~~~~~~~~  377 (727)
T 4b8c_D          305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-------PHERRFIEINTDGEPQREYD  377 (727)
T ss_dssp             CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCC-----------------
T ss_pred             CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC-------ccccceeEeecccccccccC
Confidence            6655 347778888899999988888777776543222334677888877643       345777777766        


Q ss_pred             CCChHHHHHhhCCCCCcEEEccCCccC
Q 007082          362 QIDDYAISYMSMMPSLKFIDISNTDIK  388 (619)
Q Consensus       362 ~l~~~~~~~~~~~~~L~~L~L~~n~~~  388 (619)
                      .+.+..+..+..+..++...+++|-+.
T Consensus       378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          378 SLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ------------------------CCC
T ss_pred             Cccccccchhhcccccceeeeeccccc
Confidence            233333333445556666677777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=4.1e-14  Score=155.46  Aligned_cols=121  Identities=16%  Similarity=0.174  Sum_probs=87.6

Q ss_pred             HHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccc
Q 007082          318 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE  397 (619)
Q Consensus       318 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~  397 (619)
                      +..+..+ +.|+.|+|++|.+...... + ..+++|++|+|++|.++ ..|..|..+++|++|+|++|.++ .+|.    
T Consensus       217 ~~~~~~l-~~L~~L~Ls~n~l~~l~~~-~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~----  287 (727)
T 4b8c_D          217 KDSKYDD-QLWHALDLSNLQIFNISAN-I-FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA----  287 (727)
T ss_dssp             -----CC-CCCCEEECTTSCCSCCCGG-G-GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS----
T ss_pred             hhhhccC-CCCcEEECCCCCCCCCChh-h-cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh----
Confidence            4444444 7788888888887765333 3 25788888888888887 34566778888888888888887 4466    


Q ss_pred             hhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          398 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       398 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                              .|..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+.
T Consensus       288 --------~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          288 --------ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             --------SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             --------hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence                    6778888888888888886 5677788888888888888888887776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.7e-15  Score=139.02  Aligned_cols=129  Identities=25%  Similarity=0.276  Sum_probs=84.2

Q ss_pred             hcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCC
Q 007082          348 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT  427 (619)
Q Consensus       348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  427 (619)
                      +.+++|++|++++|.+++..  .+..+++|++|++++|.++. +|.            .+..+++|++|++++|++++ +
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~-l~~------------~~~~~~~L~~L~L~~N~l~~-l  108 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK-IEN------------LDAVADTLEELWISYNQIAS-L  108 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS-CSS------------HHHHHHHCSEEEEEEEECCC-H
T ss_pred             hcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc-ccc------------hhhcCCcCCEEECcCCcCCc-C
Confidence            45677777777777766633  56667777777777777763 333            45556677777777777765 2


Q ss_pred             cccccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCchhhcc----------CCCCCCCcEEEcCCCcc
Q 007082          428 LFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSGLGS----------FKPPRSLKLLDLHGGWL  495 (619)
Q Consensus       428 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~~~~L~~l~l~~n~~  495 (619)
                      | .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..          +..+++|+.||  +|++
T Consensus       109 ~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          109 S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            3 56667777777777777776543 46667777777777777776654432          45566777665  5554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=3.5e-12  Score=130.28  Aligned_cols=327  Identities=11%  Similarity=0.143  Sum_probs=169.4

Q ss_pred             HHhhCCC-CCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCC---CChhHHHHhhcCCCCCEEEcCCCCCChhHHHHh
Q 007082          109 WALTGMT-CLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETG---LTADGIALLSSLQNLSVLDLGGLPVTDLVLRSL  184 (619)
Q Consensus       109 ~~l~~~~-~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~---~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  184 (619)
                      .+|.+|+ .|+.+.+...  ++..+..+|.+|++|+.+.+..+.   ++.....+|..+.+|+.+.+..+ +..+...+|
T Consensus        57 ~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            3455553 4677766553  455555666667777777665542   44444455666666665555432 333333455


Q ss_pred             hcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccccccCCCCCccEEeccCc
Q 007082          185 QVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT  264 (619)
Q Consensus       185 ~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~  264 (619)
                      ..+.+|+.+.+..+ +.......|..+..|+.+.+..+                    +..+....+....|+++.+..+
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--------------------~~~I~~~aF~~~~l~~i~ip~~  192 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--------------------VTAIEERAFTGTALTQIHIPAK  192 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--------------------CCEECTTTTTTCCCSEEEECTT
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce--------------------eeEeccccccccceeEEEECCc
Confidence            55556666555432 23333344555544444444322                    3333334443444555554432


Q ss_pred             cccchhHHHhhhccCCCcEEeccCCCcchhh--hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCch
Q 007082          265 TFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG  342 (619)
Q Consensus       265 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  342 (619)
                      ...-.  ...+..+..+..............  .+.............           ... ..+..+.+.. .+....
T Consensus       193 ~~~i~--~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~ip~-~v~~i~  257 (394)
T 4gt6_A          193 VTRIG--TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQ-REDPAFKIPN-GVARIE  257 (394)
T ss_dssp             CCEEC--TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTT-CCCSEEECCT-TEEEEC
T ss_pred             ccccc--cchhhhccccceecccccccccccceeeccccccccccccc-----------ccc-cccceEEcCC-cceEcc
Confidence            21111  112334445554444333222210  001100000000000           000 2333343322 222222


Q ss_pred             HHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCC
Q 007082          343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ  422 (619)
Q Consensus       343 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  422 (619)
                      ...| ..|..|+.+.+.++. ......+|.++++|+.+.+. +.++.....            +|.+|.+|+.+++..+ 
T Consensus       258 ~~aF-~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~------------aF~~c~~L~~i~lp~~-  321 (394)
T 4gt6_A          258 THAF-DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPES------------VFAGCISLKSIDIPEG-  321 (394)
T ss_dssp             TTTT-TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTT------------TTTTCTTCCEEECCTT-
T ss_pred             ccee-eecccccEEeccccc-ceecCcccccccccccccCC-CcccccCce------------eecCCCCcCEEEeCCc-
Confidence            2233 567888888886543 33444567788888888885 344433333            7888889999988764 


Q ss_pred             CCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCc
Q 007082          423 VSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW  494 (619)
Q Consensus       423 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~  494 (619)
                      ++.....+|.+|.+|+.+.+..+ ++.+....|.+|++|+.+++.++...   ...+..+.+|+.+.+..|.
T Consensus       322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            55556678888889999988654 77777778888999999999887643   2356667788888776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=9.2e-13  Score=132.32  Aligned_cols=102  Identities=20%  Similarity=0.202  Sum_probs=83.8

Q ss_pred             hccCCcCCEEEccC-CCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCC
Q 007082          407 LQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL  485 (619)
Q Consensus       407 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  485 (619)
                      +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++|+|++..+..+..++ |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            45666778888875 777777677788888888888888888888888888888888888888888877666666555 9


Q ss_pred             cEEEcCCCccCCHHHHHHHHHhCC
Q 007082          486 KLLDLHGGWLLTEDAILQFCKMHP  509 (619)
Q Consensus       486 ~~l~l~~n~~~~~~~~~~~~~~~~  509 (619)
                      +.|++.+|+|.|+|.+.++..|..
T Consensus       106 ~~l~l~~N~~~c~c~l~~~~~~~~  129 (347)
T 2ifg_A          106 QELVLSGNPLHCSCALRWLQRWEE  129 (347)
T ss_dssp             CEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             eEEEeeCCCccCCCccHHHHHHHH
Confidence            999999999999999999888753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=8.8e-15  Score=134.19  Aligned_cols=133  Identities=20%  Similarity=0.241  Sum_probs=93.2

Q ss_pred             HHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchh
Q 007082          320 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETD  399 (619)
Q Consensus       320 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~  399 (619)
                      .+..+ ++|++|++++|.+++..  .+ +.+++|++|++++|.++.. +..+..+++|++|++++|++++. |       
T Consensus        43 ~~~~l-~~L~~L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~~l-~-------  109 (198)
T 1ds9_A           43 TLSTL-KACKHLALSTNNIEKIS--SL-SGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-S-------  109 (198)
T ss_dssp             HHHHT-TTCSEEECSEEEESCCC--CH-HHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECCCH-H-------
T ss_pred             HHhcC-CCCCEEECCCCCCcccc--cc-ccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCCcC-C-------
Confidence            55555 77788888777777743  33 4577888888888777753 33455567788888888887763 2       


Q ss_pred             hhhhHHhhccCCcCCEEEccCCCCCCCCc-ccccCCCCCCEEecCCCCCCchhHH----------hhcCCCCCCEEEcCC
Q 007082          400 LVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLH----------QLSSLSKLTNLSIRD  468 (619)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~  468 (619)
                            .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|.          .+..+++|+.||  +
T Consensus       110 ------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~  181 (198)
T 1ds9_A          110 ------GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G  181 (198)
T ss_dssp             ------HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred             ------ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence                  36667788888888888775332 4677788888888888887666543          377788999886  6


Q ss_pred             CccCc
Q 007082          469 AVLTN  473 (619)
Q Consensus       469 n~l~~  473 (619)
                      |.++.
T Consensus       182 ~~i~~  186 (198)
T 1ds9_A          182 MPVDV  186 (198)
T ss_dssp             GGGTT
T ss_pred             cccCH
Confidence            76654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=1.2e-12  Score=116.31  Aligned_cols=108  Identities=16%  Similarity=0.244  Sum_probs=89.3

Q ss_pred             CCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccc
Q 007082          352 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL  431 (619)
Q Consensus       352 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  431 (619)
                      ..+.+++++|.++..+. .+  .++|++|+|++|++++..+.            .|.++++|++|+|++|++++..+..|
T Consensus        10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPG------------VFDRLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChh------------hhcCcccCCEEECCCCCcCccChhhc
Confidence            35678888888776442 22  47888999999998888777            78889999999999999987777778


Q ss_pred             cCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082          432 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       432 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      ..+++|++|+|++|+++++.+..|..+++|+.|+|++|+++..
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            8899999999999999988887888999999999999988753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=2.4e-12  Score=114.87  Aligned_cols=107  Identities=11%  Similarity=0.197  Sum_probs=88.0

Q ss_pred             CcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccccc
Q 007082          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  432 (619)
Q Consensus       353 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  432 (619)
                      -+.+++++|.++..+. .+  .++|++|++++|++++..|.            .|.++++|++|+|++|++++..+..|.
T Consensus        14 ~~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~   78 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPG------------VFDHLVNLQQLYFNSNKLTAIPTGVFD   78 (174)
T ss_dssp             SSEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHH------------HhcCCcCCCEEECCCCCCCccChhHhC
Confidence            4678888888766443 22  37888999999998888777            788899999999999999877666778


Q ss_pred             CCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCch
Q 007082          433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS  474 (619)
Q Consensus       433 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  474 (619)
                      .+++|++|+|++|+++++++..|..+++|+.|+|++|++...
T Consensus        79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            899999999999999988777788899999999999988743

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.30  E-value=7.9e-12  Score=127.65  Aligned_cols=325  Identities=18%  Similarity=0.206  Sum_probs=193.8

Q ss_pred             HHHhcCC-CccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCC--CCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHh
Q 007082           84 AYLGAFR-YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRC--VKVTDAGMKHLLSISTLEKLWLSETGLTADGIALL  160 (619)
Q Consensus        84 ~~~~~~~-~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~--~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~  160 (619)
                      .+|.+++ .|+.+.+...  ++.....+|.+|++|+.+.+..+  ..++..+..+|..|.+|+.+.+..+ ++.....+|
T Consensus        57 ~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF  133 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF  133 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred             hhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence            3577775 6999999863  67777788999999999999765  2466667788889999999888754 555666788


Q ss_pred             hcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCC----CCCCCCCCcEE
Q 007082          161 SSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVT----KLPNISSLECL  236 (619)
Q Consensus       161 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~----~l~~l~~L~~L  236 (619)
                      ..+.+|+.+.+..+ +..+....|..+..|+.+.+..+ +......+|.+ .+|+.+.+..+...    .+..+..++..
T Consensus       134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~  210 (394)
T 4gt6_A          134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTI  210 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred             hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhcccccee
Confidence            99999999999754 45555678889999999999764 55555666754 56888777654221    23345556555


Q ss_pred             EcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCCCCC
Q 007082          237 NLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIG  314 (619)
Q Consensus       237 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~  314 (619)
                      .........+...++.........+.           .+.....+..+.+... ++.+  ..|..+              
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ip~~-v~~i~~~aF~~c--------------  264 (394)
T 4gt6_A          211 TSDSESYPAIDNVLYEKSANGDYALI-----------RYPSQREDPAFKIPNG-VARIETHAFDSC--------------  264 (394)
T ss_dssp             EECCSSSCBSSSCEEEECTTSCEEEE-----------ECCTTCCCSEEECCTT-EEEECTTTTTTC--------------
T ss_pred             cccccccccccceeeccccccccccc-----------ccccccccceEEcCCc-ceEcccceeeec--------------
Confidence            55444333222211110000000000           0001112222222111 1111  233444              


Q ss_pred             hhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhcc
Q 007082          315 DDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQV  394 (619)
Q Consensus       315 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~  394 (619)
                                 ..|+.+.+.++. .......+ ..|++|+.+.+. +.++.....+|.++.+|+.+.|..+ ++..-.. 
T Consensus       265 -----------~~L~~i~lp~~~-~~I~~~aF-~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~-  328 (394)
T 4gt6_A          265 -----------AYLASVKMPDSV-VSIGTGAF-MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD-  328 (394)
T ss_dssp             -----------SSCCEEECCTTC-CEECTTTT-TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT-
T ss_pred             -----------ccccEEeccccc-ceecCccc-ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh-
Confidence                       445555554321 11222222 457777777775 3455555567778888888888654 4333333 


Q ss_pred             ccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCcc
Q 007082          395 GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL  471 (619)
Q Consensus       395 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  471 (619)
                                 +|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++...   ...+..+..|+.+.+..|.+
T Consensus       329 -----------aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          329 -----------AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             -----------TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             -----------HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence                       7888888888888654 66566778888888888888877432   24667778888888876654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1e-10  Score=117.23  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=54.6

Q ss_pred             EEEccCC-CCCCchHHHHHhcCCCCcEEEccC-CCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082          330 NLNLSNT-RFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  407 (619)
Q Consensus       330 ~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~  407 (619)
                      .++.+++ .++..+.  + ..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..+.            .|
T Consensus        12 ~v~~~~~n~l~~ip~--l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------~~   76 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------AF   76 (347)
T ss_dssp             CEECCSSCCCTTTTT--S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT------------GG
T ss_pred             EEEcCCCCCCCccCC--C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH------------Hh
Confidence            3455554 5554322  2 4455555555554 555555555555555555555555555555554            45


Q ss_pred             ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC
Q 007082          408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  448 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  448 (619)
                      .++++|++|+|++|+|++..+..|..++ |+.|+|.+|.+.
T Consensus        77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            5555555555555555544444444333 555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.08  E-value=6.6e-10  Score=112.85  Aligned_cols=81  Identities=14%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             HhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCC
Q 007082           86 LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQN  165 (619)
Q Consensus        86 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~  165 (619)
                      +....+|+.+.+..  .++..+..+|.+|.+|+.++|..+  ++.....+|.++ +|+.+.+..+ +......+|..+ +
T Consensus        42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D  114 (379)
T ss_dssp             GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred             cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence            34455677777764  255555556667777777777543  445555556555 4555555432 333333344443 5


Q ss_pred             CCEEEcCC
Q 007082          166 LSVLDLGG  173 (619)
Q Consensus       166 L~~L~L~~  173 (619)
                      |+.+.+..
T Consensus       115 L~~i~lp~  122 (379)
T 4h09_A          115 LDDFEFPG  122 (379)
T ss_dssp             CSEEECCT
T ss_pred             cccccCCC
Confidence            66666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.05  E-value=1.3e-09  Score=110.54  Aligned_cols=139  Identities=13%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             CCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHH
Q 007082          326 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT  405 (619)
Q Consensus       326 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~  405 (619)
                      ..|+.+.+..+ +.......+ ..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......            
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~------------  280 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAF-YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL------------  280 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTT-TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT------------
T ss_pred             cccceeeeccc-eeEEccccc-cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc------------
Confidence            45555555432 222222222 34666666666554 44444455666666776666433 3222222            


Q ss_pred             hhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCC
Q 007082          406 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP  482 (619)
Q Consensus       406 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  482 (619)
                      .|.+|++|+.+.+.++.++.....+|.++.+|+.+.|..+ ++.+....|.+|++|+.+.+..+ ++.....+|..+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            5667777777777666666555666777777777777543 55555566777777777766543 444444555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.03  E-value=2.3e-10  Score=99.88  Aligned_cols=89  Identities=20%  Similarity=0.418  Sum_probs=61.3

Q ss_pred             CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCC----CCCCEEeCCCCCCCChhhHhhhcCCCC
Q 007082           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGM----TCLKELDLSRCVKVTDAGMKHLLSIST  141 (619)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~----~~L~~L~L~~~~~l~~~~~~~l~~l~~  141 (619)
                      .|+.||++++. ++......+..|++|++|+|++|..+++..+..++.+    ++|++|+|++|..+++.+...+..+++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            47777777776 6555555566777777777777766777777777653    467777777776677777777777777


Q ss_pred             CcEEEccCC-CCChh
Q 007082          142 LEKLWLSET-GLTAD  155 (619)
Q Consensus       142 L~~L~L~~~-~~~~~  155 (619)
                      |++|++++| .+++.
T Consensus       141 L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CCEEEEESCTTCCCH
T ss_pred             CCEEECCCCCCCCch
Confidence            777777776 35543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=3.9e-09  Score=105.14  Aligned_cols=72  Identities=22%  Similarity=0.373  Sum_probs=35.4

Q ss_pred             CCCCCEEecCCCCCCchhHHhhc---CCCCCCEEEcCCCccCchhhcc----CCCCCCCcEEEcCCCccCCHHHHHHHHH
Q 007082          434 FKELIHLSLRNASLTDVSLHQLS---SLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLHGGWLLTEDAILQFCK  506 (619)
Q Consensus       434 l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~l~l~~n~~~~~~~~~~~~~  506 (619)
                      +++|+.|+|.+|.+++..+..+.   .+++|++|+|+.|.+++..+..    +..+++|+.|++++|++ .+.....+.+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i-~d~~~~~l~~  329 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL-SDEMKKELQK  329 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC-CHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC-CHHHHHHHHH
Confidence            45555565555555443322222   3455666666666655532222    12235666666665543 4444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.90  E-value=2.3e-09  Score=93.54  Aligned_cols=89  Identities=20%  Similarity=0.400  Sum_probs=76.2

Q ss_pred             CCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCC----CCCcEEEccCC-CCChhHHHHhhcCC
Q 007082           90 RYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSI----STLEKLWLSET-GLTADGIALLSSLQ  164 (619)
Q Consensus        90 ~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l----~~L~~L~L~~~-~~~~~~~~~~~~l~  164 (619)
                      .+|++|++++|. +++.++..+.+|++|++|+|++|..+++.....++.+    ++|++|++++| .+++.....++.++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            369999999998 8998888889999999999999988999999888875    47999999988 58888888888888


Q ss_pred             CCCEEEcCCCC-CChh
Q 007082          165 NLSVLDLGGLP-VTDL  179 (619)
Q Consensus       165 ~L~~L~L~~n~-~~~~  179 (619)
                      +|++|+++++. +++.
T Consensus       140 ~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             TCCEEEEESCTTCCCH
T ss_pred             CCCEEECCCCCCCCch
Confidence            99999998885 5553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.2e-08  Score=101.63  Aligned_cols=86  Identities=16%  Similarity=0.265  Sum_probs=58.5

Q ss_pred             cCCCCCEEeCcCCCCChhHHHHHHh--cCCCCcEEEccCCCCCCchHHHHH---hcCCCCcEEEccCCCCChHHHHHhhC
Q 007082          299 QMKALEHLDLSSSMIGDDSVEMVAC--VGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYMSM  373 (619)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~  373 (619)
                      .+++|++|++.+|.+++.....+..  .+++|++|+|+.|.+++.+...+.   ..+++|+.|++++|.+++.....+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            4677888888777777655555543  226788888888887776555543   23678888888888888766665553


Q ss_pred             -CCCCcEEEccCCc
Q 007082          374 -MPSLKFIDISNTD  386 (619)
Q Consensus       374 -~~~L~~L~L~~n~  386 (619)
                       +  ...+++++++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             3  4557787776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.86  E-value=2.6e-08  Score=89.47  Aligned_cols=122  Identities=20%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             hHHHHHHhcCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCC
Q 007082           80 AEWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETG  151 (619)
Q Consensus        80 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~  151 (619)
                      ..+...+...+.|++|+|++|+.+.+.....    +...++|++|+|++| .+.+.+...++    ..+.|++|+|++|.
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3455566777888888888872376655444    345677888888888 56666554443    45778888888888


Q ss_pred             CChhHH----HHhhcCCCCCEEEc--CCCCCChhHHH----HhhcCCCCCEEEccCCccCc
Q 007082          152 LTADGI----ALLSSLQNLSVLDL--GGLPVTDLVLR----SLQVLTKLEYLDLWGSQVSN  202 (619)
Q Consensus       152 ~~~~~~----~~~~~l~~L~~L~L--~~n~~~~~~~~----~~~~l~~L~~L~l~~n~i~~  202 (619)
                      +.+...    ..+...+.|++|+|  ++|.+.+....    .+...+.|++|++++|.+..
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            877653    34455677888888  77777765433    33456778888888877653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.78  E-value=4.1e-08  Score=88.17  Aligned_cols=117  Identities=15%  Similarity=0.096  Sum_probs=82.3

Q ss_pred             HHHhhCCCCCCEEeCCCCCCCChhhHhhh----cCCCCCcEEEccCCCCChhHHH----HhhcCCCCCEEEcCCCCCChh
Q 007082          108 LWALTGMTCLKELDLSRCVKVTDAGMKHL----LSISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDL  179 (619)
Q Consensus       108 ~~~l~~~~~L~~L~L~~~~~l~~~~~~~l----~~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~  179 (619)
                      ...+..+++|++|+|++|..+.+.+...+    ...++|++|+|++|.+.+....    .+...+.|++|+|++|.+.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            34566888999999999855676655444    4678899999999999876543    445668899999999998876


Q ss_pred             H----HHHhhcCCCCCEEEc--cCCccCchhhH----hhcCCCCCCEEecCCCCC
Q 007082          180 V----LRSLQVLTKLEYLDL--WGSQVSNRGAA----VLKMFPRLSFLNLAWTGV  224 (619)
Q Consensus       180 ~----~~~~~~l~~L~~L~l--~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l  224 (619)
                      .    ...+...+.|++|++  ++|.+.+....    .+...++|+.|++++|.+
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            4    344556788999999  77888765433    334445555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.42  E-value=1.6e-07  Score=78.36  Aligned_cols=86  Identities=12%  Similarity=0.028  Sum_probs=61.8

Q ss_pred             CEEecCCCCCC--chhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeee-e
Q 007082          438 IHLSLRNASLT--DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV-W  514 (619)
Q Consensus       438 ~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~-~  514 (619)
                      ..++.+++.++  .+ |..+  -++|+.|+|++|+|+...+..|..+++|+.|+|++|||.|+|.+.|+..|...... .
T Consensus        11 ~~v~Cs~~~L~~~~v-P~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~   87 (130)
T 3rfe_A           11 TLVDCGRRGLTWASL-PTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA   87 (130)
T ss_dssp             TEEECCSSCCCTTTS-CSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred             CEEEeCCCCCccccC-CCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence            36777777776  43 3222  24688888888888888777888889999999999999999999999988754321 1


Q ss_pred             cccccccCCCCC
Q 007082          515 HELSVICPSDQI  526 (619)
Q Consensus       515 ~~~~~~~~~~~~  526 (619)
                      ......|..|..
T Consensus        88 ~~~~~~C~~P~~   99 (130)
T 3rfe_A           88 PYRDLRCVAPPA   99 (130)
T ss_dssp             GGTTCBCCBSTT
T ss_pred             cccCcEeCcChH
Confidence            233445655543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=1e-07  Score=89.85  Aligned_cols=17  Identities=24%  Similarity=0.411  Sum_probs=8.6

Q ss_pred             CCCCCcEEEccCCccCc
Q 007082          373 MMPSLKFIDISNTDIKG  389 (619)
Q Consensus       373 ~~~~L~~L~L~~n~~~~  389 (619)
                      .+++|+.|+|++|++++
T Consensus       168 ~l~~L~~L~Ls~N~l~~  184 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYR  184 (267)
T ss_dssp             HCTTCCEEECTTSCCCC
T ss_pred             hCCCCCEEECCCCCCCC
Confidence            34555555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=2.4e-07  Score=87.26  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=44.9

Q ss_pred             ccCCcCCEEEccCCCCCC--CCcccccCCCCCCEEecCCCCCCchhHHhhcCCC--CCCEEEcCCCccCchhh-------
Q 007082          408 QNLNHLERLNLEQTQVSD--ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS--KLTNLSIRDAVLTNSGL-------  476 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~-------  476 (619)
                      .++++|+.|+|++|++++  .++..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+..+       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456666666666666665  2334455666666666666666664  1222333  66666666666664322       


Q ss_pred             ccCCCCCCCcEEE
Q 007082          477 GSFKPPRSLKLLD  489 (619)
Q Consensus       477 ~~~~~~~~L~~l~  489 (619)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1233456666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.02  E-value=9.1e-05  Score=65.78  Aligned_cols=119  Identities=13%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             HHHHHHhcCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCCC
Q 007082           81 EWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGL  152 (619)
Q Consensus        81 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~~  152 (619)
                      .+...+..-+.|++|+|++++.+.+.....    +..-+.|++|+|++| .+.+.+...++    .-+.|++|+|+.|.|
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            344445556778888887753466655444    334567888888877 66666655554    346777777777777


Q ss_pred             ChhHHH----HhhcCCCCCEEEcCCC---CCChhH----HHHhhcCCCCCEEEccCCcc
Q 007082          153 TADGIA----LLSSLQNLSVLDLGGL---PVTDLV----LRSLQVLTKLEYLDLWGSQV  200 (619)
Q Consensus       153 ~~~~~~----~~~~l~~L~~L~L~~n---~~~~~~----~~~~~~l~~L~~L~l~~n~i  200 (619)
                      .+.+..    ++..-+.|++|+|+++   .+.+..    ...+..-+.|++|+++.+.+
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            766543    3344456777777654   344432    23444556777777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.89  E-value=0.00015  Score=64.34  Aligned_cols=112  Identities=18%  Similarity=0.217  Sum_probs=76.7

Q ss_pred             hhCCCCCCEEeCCCCCCCChhhHhhh----cCCCCCcEEEccCCCCChhHHH----HhhcCCCCCEEEcCCCCCChhHHH
Q 007082          111 LTGMTCLKELDLSRCVKVTDAGMKHL----LSISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLVLR  182 (619)
Q Consensus       111 l~~~~~L~~L~L~~~~~l~~~~~~~l----~~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~~~  182 (619)
                      +.+-+.|++|+|+++..+.+.+...+    ..-+.|+.|+|++|.+.+....    ++..-+.|++|+|++|.|.+....
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            45667899999988656777665444    3557899999999998876543    445668899999999998876555


Q ss_pred             Hh----hcCCCCCEEEccCC---ccCch----hhHhhcCCCCCCEEecCCC
Q 007082          183 SL----QVLTKLEYLDLWGS---QVSNR----GAAVLKMFPRLSFLNLAWT  222 (619)
Q Consensus       183 ~~----~~l~~L~~L~l~~n---~i~~~----~~~~~~~~~~L~~L~l~~n  222 (619)
                      .+    ..-+.|++|+|+++   .+.+.    +...+..-+.|+.|+++.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            44    34567888888754   44433    2334555556666665544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.75  E-value=0.002  Score=53.27  Aligned_cols=56  Identities=13%  Similarity=0.109  Sum_probs=36.0

Q ss_pred             EEEccCCCCC-CCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          415 RLNLEQTQVS-DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       415 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      .++.++++++ ..+|..+  .++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666665 2344332  345777777777777776667777777777777777653

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=92.36  E-value=0.0082  Score=37.88  Aligned_cols=11  Identities=0%  Similarity=-0.082  Sum_probs=5.1

Q ss_pred             eeecccccchh
Q 007082          576 FFVCFSKTDQR  586 (619)
Q Consensus       576 ~~~~~~~~~~r  586 (619)
                      ++++++|++++
T Consensus        31 ~~~~~RRr~~~   41 (44)
T 2ks1_B           31 IGLFMRRRHIV   41 (44)
T ss_dssp             HHHHHHTTTCC
T ss_pred             HHHHhhhhHhh
Confidence            44455544443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=88.31  E-value=0.016  Score=36.40  Aligned_cols=11  Identities=18%  Similarity=0.353  Sum_probs=5.1

Q ss_pred             eeecccccchh
Q 007082          576 FFVCFSKTDQR  586 (619)
Q Consensus       576 ~~~~~~~~~~r  586 (619)
                      +++++||++++
T Consensus        30 ~~~~~RRRr~~   40 (44)
T 2l2t_A           30 FAVYVRRKSIK   40 (44)
T ss_dssp             HHHHHHTTCSS
T ss_pred             HHHHhhhhhhh
Confidence            44455444443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=82.18  E-value=0.035  Score=34.81  Aligned_cols=7  Identities=0%  Similarity=-0.130  Sum_probs=3.9

Q ss_pred             cccceee
Q 007082          557 LGGVLLF  563 (619)
Q Consensus       557 i~~v~~~  563 (619)
                      +++.+++
T Consensus        14 Ia~~vVG   20 (44)
T 2jwa_A           14 IISAVVG   20 (44)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            5555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	619
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 5e-10
 Identities = 64/374 (17%), Positives = 131/374 (35%), Gaps = 42/374 (11%)

Query: 144 KLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNR 203
           K  L +T +T       + L  ++ L    L +  +    ++ L  L  ++   +Q++  
Sbjct: 26  KTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-- 79

Query: 204 GAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAP-------- 255
               LK   +L  + +    +  +  +++L  L       + I + +  K          
Sbjct: 80  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 256 ----LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 311
               ++ IS        ++ +F    T L    +++                    L++ 
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 312 MIGDDSVEMVA-----CVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY 366
                +   ++      +  NL  L+L+  +    G       L NL  L L+  QI + 
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISN- 255

Query: 367 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSL--------TALQNLNHLERLNL 418
            ++ +S +  L  + +    I       G      L L        + + NL +L  L L
Sbjct: 256 -LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 419 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGS 478
               +SD  + P+S+  +L  L   N  ++DVS   L++L+ +  LS     +  S L  
Sbjct: 315 YFNNISD--ISPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQI--SDLTP 368

Query: 479 FKPPRSLKLLDLHG 492
                 +  L L+ 
Sbjct: 369 LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 25/153 (16%)

Query: 86  LGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIST---- 141
           +G    L +L   D      S L  L+G+T L EL L        + +  L +++     
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 142 ---------------LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQV 186
                          L  L L    ++   I+ +SSL  L  L      V+D+   SL  
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDV--SSLAN 349

Query: 187 LTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
           LT + +L    +Q+S      L    R++ L L
Sbjct: 350 LTNINWLSAGHNQIS--DLTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 82  WMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSIST 141
            ++ +     L +L   +        +  ++ +  L  L L        + +  + S++ 
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN---NISDISPVSSLTK 330

Query: 142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDL 195
           L++L+ +   ++   ++ L++L N++ L  G   ++DL    L  LT++  L L
Sbjct: 331 LQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGL 380

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 1e-07
 Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 303 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA---GHLPNLEILSLS 359
           ++ LD+    + D     +  +    + + L +   + A    ++      P L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 360 GTQIDDYAISYM-----SMMPSLKFIDISN 384
             ++ D  +  +     +    ++ + + N
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 12/96 (12%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 327 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM----PSLKFIDI 382
           ++++L++     S A    L   L   +++ L    + +     +S      P+L  +++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 418
            + ++       G      +          +++L+L
Sbjct: 63  RSNEL-------GDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 6e-06
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 142 LEKLWLSETGLTADGIA-LLSSLQNLSVLDLGGLPVTDLVLRS----LQVLTKLEYLDLW 196
           ++ L +    L+    A LL  LQ   V+ L    +T+   +     L+V   L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 197 GSQVSNRGAAVL-----KMFPRLSFLNLAW 221
            +++ + G   +         ++  L+L  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 281 LSFLDVSNSSLSRFCF---LTQMKALEHLDLSSSMIGDDSVEMVACVGA---NLRNLNLS 334
           +  LD+    LS   +   L  ++  + + L    + +   + ++        L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 335 NTRFSSAGVGILAGHL----PNLEILSLSGTQIDDYAISYMSMMPS 376
           +      GV  +   L      ++ LSL    +       +S    
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 300 MKALEHLDLSSSMIGDDSVEMVA---CVGANLRNLNLSNTRFSSAGVGILAGHLPN---- 352
              L  L L+   + D S   +A       +LR L+LSN     AG+  L   +      
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 353 LEILSLSGTQIDDYAISYMSMM----PSLKFI 380
           LE L L      +     +  +    PSL+ I
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 80  AEWMAYLGAFRYLRSLNVADCRRVTSSALW---ALTGMTCLKELDLSRCVKVTDAGMKHL 136
                       LR L +ADC    SS       L     L+ELDLS    + DAG+  L
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQL 417

Query: 137 LSI-----STLEKLWLSETGLTADGIALLSSLQ----NLSVL 169
           +         LE+L L +   + +    L +L+    +L V+
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 135 HLLSISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLVLRSL-----Q 185
                S L  LWL++  ++    +     L +  +L  LDL    + D  +  L     Q
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 186 VLTKLEYLDLWGSQVSNRGA----AVLKMFPRLSFL 217
               LE L L+    S        A+ K  P L  +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 279 SLLSFLDVSNSSLSRFCF------LTQMKALEHLDLSSSMIGDDSVEMVA----CVGANL 328
           S+L  L +++  +S          L    +L  LDLS++ +GD  +  +       G  L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 329 RNLNLSNTRFSSAGVGILAG---HLPNLEILS 357
             L L +  +S      L       P+L ++S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 66  NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALW----ALTGMTCLKELD 121
           + ++++++ E   DA W   L   +  + + + DC  +T +       AL     L EL+
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELN 61

Query: 122 LSRCVKVTDAGMKHLLSI-----STLEKLWLS 148
           L    ++ D G+  +L         ++KL L 
Sbjct: 62  LRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 8e-04
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 165 NLSVLDLGGLPVTDLVLRSL-QVLTKLEYLDLWGSQVSNRG----AAVLKMFPRLSFLNL 219
           ++  LD+    ++D     L  +L + + + L    ++       ++ L++ P L+ LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 220 AWTGVTKLPNISSLECLNLSNCTIDSI 246
               +  +     L+ L   +C I  +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKL 89

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 48/298 (16%), Positives = 95/298 (31%), Gaps = 25/298 (8%)

Query: 140 STLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQ 199
                L L    +T        +L+NL  L L    ++ +   +   L KLE L L  +Q
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 200 VSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKI 259
           +      + K    L       T V K       + + +   T      G EN A     
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA----- 145

Query: 260 SLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVE 319
                          +     LS++ +++++++         +L  L L  + I      
Sbjct: 146 ---------------FQGMKKLSYIRIADTNITTI-PQGLPPSLTELHLDGNKITKVDAA 189

Query: 320 MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 379
            +  +  NL  L LS    S+   G LA   P+L  L L+  ++             ++ 
Sbjct: 190 SLKGLN-NLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLVKVPGGLADHK-YIQV 246

Query: 380 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 437
           + + N +I                  +   ++ L    ++  ++  +T   +     +
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVS-LFSNPVQYWEIQPSTFRCVYVRAAV 303

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 48/263 (18%), Positives = 88/263 (33%), Gaps = 22/263 (8%)

Query: 145 LW----LSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQV 200
           LW    L+   L  D    L S Q +         +   +        +++++DL  S +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVI 58

Query: 201 SNRG-AAVLKMFPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGNENKA 254
                  +L    +L  L+L    ++      L   S+L  LNLS C+  S        +
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 255 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKA----------LE 304
             +++     ++  +                ++  +LS +    Q             L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 364
           HLDLS S++  +           L++L+LS          +  G +P L+ L + G   D
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 365 DYAISYMSMMPSLKFIDISNTDI 387
                    +P L+      T I
Sbjct: 239 GTLQLLKEALPHLQINCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 18/93 (19%), Positives = 35/93 (37%)

Query: 76  NSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKH 135
           N   ++    +     L  L+++D   + +        +  L+ L LSRC  +    +  
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 136 LLSISTLEKLWLSETGLTADGIALLSSLQNLSV 168
           L  I TL+ L +           L  +L +L +
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 28/252 (11%), Positives = 81/252 (32%), Gaps = 25/252 (9%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 343
           LD++  +L       ++ +   +         D           +++++LSN+    + +
Sbjct: 5   LDLTGKNLHPD-VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 344 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID---------------------I 382
             +      L+ LSL G ++ D  ++ ++   +L  ++                     +
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 383 SNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 442
              ++            + ++  +            +  Q SD +         +     
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 443 RNASLTDVSLHQLSSLSKLTNLSIRD-AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 501
            +  L +    +   L+ L +LS+     +    L       +LK L + G  ++ +  +
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG--IVPDGTL 241

Query: 502 LQFCKMHPRIEV 513
               +  P +++
Sbjct: 242 QLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 39/264 (14%), Positives = 69/264 (26%), Gaps = 33/264 (12%)

Query: 100 CRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIAL 159
            R      L        ++ +DLS    +  + +                         +
Sbjct: 31  PRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLH-----------------------GI 66

Query: 160 LSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNL 219
           LS    L  L L GL ++D ++ +L   + L  L+L G    +  A    +        L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 220 AWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETS 279
             +             +   +            +  L+                      
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSE--------TITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 280 LLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 339
            L   D        F    Q+  L+HL LS          +       L+ L +      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 237

Query: 340 SAGVGILAGHLPNLEILSLSGTQI 363
              + +L   LP+L+I     T I
Sbjct: 238 DGTLQLLKEALPHLQINCSHFTTI 261

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 13/223 (5%)

Query: 162 SLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW 221
           +L N   +  G   VTD V  +   L  +  L  +G+ V+      ++    L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 222 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL 281
             +T L  + +L  +     + + +   +      +  +L  T+        L   ++L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 282 SFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 341
                 N   +                ++ +     +  ++     L  L   + + S  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS----KLTTLKADDNKISDI 188

Query: 342 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
                   LPNL  + L   QI D  +S ++   +L  + ++N
Sbjct: 189 ---SPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 17/224 (7%)

Query: 138 SISTLEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWG 197
           +++   K+   ++ +T       + L  ++ L   G  VT   +  +Q L  L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVT--DTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 198 SQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLA 257
           +Q        +     L  L            + ++  +          L   +      
Sbjct: 73  NQ--------ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 258 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 317
              L+    +      +   + L    ++   S+                L++    D+ 
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 318 VEMVACVGA--NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 359
           +  ++ + +  NL  ++L N + S         +  NL I++L+
Sbjct: 185 ISDISPLASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 4/188 (2%)

Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
           ++ L    + ++    +  +  L  L+L  + I D +          L          S+
Sbjct: 43  ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA 102

Query: 341 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 400
                    L          T +   +   +  +   +  +IS       +Q +      
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ 162

Query: 401 VLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 460
           V  LT L NL+ L  L  +  ++SD  + PL++   LI + L+N  ++DVS   L++ S 
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSN 218

Query: 461 LTNLSIRD 468
           L  +++ +
Sbjct: 219 LFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 428 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN-SGLGSFKPPRSLK 486
           +FP       I ++   +++TD      + L  +T LS     +T   G+       +L 
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLN---NLI 66

Query: 487 LLDLHGGWLLTEDAILQFCKMHPRIEVWH 515
            L+L    +     +    K+       +
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGN 95

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 23/118 (19%)

Query: 284 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN------------- 330
           L +++  L+  C L Q+  + HLDLS + +      + A     +               
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 331 -------LNLSNTRFSSAGVGILAGHLPNLEILSLSG---TQIDDYAISYMSMMPSLK 378
                  L L N R   +         P L +L+L G    Q +        M+PS+ 
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 11/200 (5%)

Query: 161 SSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLA 220
            +       +L    VTD V  +   L  ++ +    S + +     ++  P ++ L L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 221 WTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSL 280
              +T +  +++L+ L       + + + +  K      SL+           L     L
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 281 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 340
            S    +N            K        + +     +  +      L+NL LS    S 
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT----KLQNLYLSKNHISD 192

Query: 341 AGVGILAGHLPNLEILSLSG 360
             +  LAG L NL++L L  
Sbjct: 193 --LRALAG-LKNLDVLELFS 209

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 283 FLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG 342
              ++ SS           +LE L++S++ + +            L  L  S    +   
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-----PRLERLIASFNHLAE-- 318

Query: 343 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN 384
              +     NL+ L +    +      +  +  S++ + +++
Sbjct: 319 ---VPELPQNLKQLHVEYNPLR----EFPDIPESVEDLRMNS 353

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	619
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.34
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.07

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=3.2e-27  Score=239.78  Aligned_cols=342  Identities=22%  Similarity=0.304  Sum_probs=212.0

Q ss_pred             cCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcCCCCC
Q 007082           88 AFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSLQNLS  167 (619)
Q Consensus        88 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~  167 (619)
                      .+.+|++|++++|. +++  +..+..+++|++|+|++| .+++..  .++++++|++|++++|.+.+..  .++.+++|+
T Consensus        42 ~l~~l~~L~l~~~~-I~~--l~gl~~L~nL~~L~Ls~N-~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLG-IKS--IDGVEYLNNLTQINFSNN-QLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSC-CCC--CTTGGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCC
T ss_pred             HhCCCCEEECCCCC-CCC--ccccccCCCCCEEeCcCC-cCCCCc--cccCCccccccccccccccccc--ccccccccc
Confidence            45577888888776 554  234667788888888887 565532  3777788888888888777643  367777888


Q ss_pred             EEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCCCCcEEEcCCccccccc
Q 007082          168 VLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSIL  247 (619)
Q Consensus       168 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~~L~~L~l~~~~l~~l~  247 (619)
                      .|++.++.+.+...  ......+..+....+.+..........................+.............+.... .
T Consensus       114 ~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  190 (384)
T d2omza2         114 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I  190 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc-c
Confidence            88887777665532  33455666666666655544333332222222222233333333333333333333332221 1


Q ss_pred             cccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCC
Q 007082          248 EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN  327 (619)
Q Consensus       248 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  327 (619)
                      ...                         ..+++++.+++++|.++.......+++|++|++++|.+++..  .+... ++
T Consensus       191 ~~~-------------------------~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~--~l~~l-~~  242 (384)
T d2omza2         191 SVL-------------------------AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLASL-TN  242 (384)
T ss_dssp             GGG-------------------------GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGC-TT
T ss_pred             ccc-------------------------ccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc--hhhcc-cc
Confidence            122                         234555555555555555544555666666666666665532  23333 66


Q ss_pred             CcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh
Q 007082          328 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL  407 (619)
Q Consensus       328 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~  407 (619)
                      |+.+++++|.+++..+  + +.+++|++|++++|.+++..+  +..++.++.++++.|.+++..              .+
T Consensus       243 L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--------------~~  303 (384)
T d2omza2         243 LTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--------------PI  303 (384)
T ss_dssp             CSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------------GG
T ss_pred             cchhccccCccCCCCc--c-cccccCCEeeccCcccCCCCc--ccccccccccccccccccccc--------------cc
Confidence            7777777777666543  2 457777777777777766542  566777777887777776532              35


Q ss_pred             ccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcE
Q 007082          408 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL  487 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  487 (619)
                      ..+++++.|++++|++++..  .+..+++|++|++++|+++++.  .++.+++|++|++++|++++..|  +..+++|+.
T Consensus       304 ~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         304 SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            66777888888888777543  3667788888888888877643  57778888888888888877653  667778888


Q ss_pred             EEcCCC
Q 007082          488 LDLHGG  493 (619)
Q Consensus       488 l~l~~n  493 (619)
                      |++++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            888776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.9e-25  Score=226.65  Aligned_cols=337  Identities=21%  Similarity=0.301  Sum_probs=227.5

Q ss_pred             CCccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcE
Q 007082           65 HNAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEK  144 (619)
Q Consensus        65 ~~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~  144 (619)
                      .++++|+++++. +...  +.++.+++|++|+|++|+ +++..  .++++++|++|++++| .+.+.  ..++++++|+.
T Consensus        44 ~~l~~L~l~~~~-I~~l--~gl~~L~nL~~L~Ls~N~-l~~l~--~l~~L~~L~~L~L~~n-~i~~i--~~l~~l~~L~~  114 (384)
T d2omza2          44 DQVTTLQADRLG-IKSI--DGVEYLNNLTQINFSNNQ-LTDIT--PLKNLTKLVDILMNNN-QIADI--TPLANLTNLTG  114 (384)
T ss_dssp             TTCCEEECCSSC-CCCC--TTGGGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCE
T ss_pred             CCCCEEECCCCC-CCCc--cccccCCCCCEEeCcCCc-CCCCc--cccCCccccccccccc-ccccc--ccccccccccc
Confidence            479999999997 5432  357899999999999997 76643  4899999999999999 55543  34889999999


Q ss_pred             EEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCC
Q 007082          145 LWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGV  224 (619)
Q Consensus       145 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l  224 (619)
                      |++.++.+++...  ......+.......+.+.......................     ...+.............+..
T Consensus       115 L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         115 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccccccccccccccccch-----hhhhcccccccccccccccc
Confidence            9999998887543  3455677777777666554433222222222222222211     12344455555555655544


Q ss_pred             CC---CCCCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCC
Q 007082          225 TK---LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMK  301 (619)
Q Consensus       225 ~~---l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  301 (619)
                      ..   ...+++++.+++++|.++.+++ ...+++|++|++++|.+..                         ++.+..++
T Consensus       188 ~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-------------------------~~~l~~l~  241 (384)
T d2omza2         188 SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-------------------------IGTLASLT  241 (384)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------------------CGGGGGCT
T ss_pred             ccccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC-------------------------cchhhccc
Confidence            42   3367788888888888776643 2334455555555555444                         34445556


Q ss_pred             CCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEE
Q 007082          302 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID  381 (619)
Q Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  381 (619)
                      +|+.+++++|.+++..+  +... ++|++|+++++++++..+  + ..++.++.+.+.+|.+++..  .+..++++++|+
T Consensus       242 ~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~~~l~~~~~--~-~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~  313 (384)
T d2omza2         242 NLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISP--L-AGLTALTNLELNENQLEDIS--PISNLKNLTYLT  313 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEE
T ss_pred             ccchhccccCccCCCCc--cccc-ccCCEeeccCcccCCCCc--c-cccccccccccccccccccc--ccchhcccCeEE
Confidence            66666666666655332  2333 666777776666665432  2 45777888888888777642  366788888888


Q ss_pred             ccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCC
Q 007082          382 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL  461 (619)
Q Consensus       382 L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  461 (619)
                      +++|++++..              .+..+++|++|++++|++++ + ..+..+++|++|++++|++++..|  +.++++|
T Consensus       314 ls~n~l~~l~--------------~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L  375 (384)
T d2omza2         314 LYFNNISDIS--------------PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISDLTP--LANLTRI  375 (384)
T ss_dssp             CCSSCCSCCG--------------GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred             CCCCCCCCCc--------------ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence            8888887653              35678888888888888875 2 357888888888888888888764  7888888


Q ss_pred             CEEEcCCC
Q 007082          462 TNLSIRDA  469 (619)
Q Consensus       462 ~~L~L~~n  469 (619)
                      +.|+|++|
T Consensus       376 ~~L~L~~N  383 (384)
T d2omza2         376 TQLGLNDQ  383 (384)
T ss_dssp             SEEECCCE
T ss_pred             CEeeCCCC
Confidence            99988887

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=217.67  Aligned_cols=205  Identities=17%  Similarity=0.236  Sum_probs=171.2

Q ss_pred             hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEcc-CCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCC
Q 007082          296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS-NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM  374 (619)
Q Consensus       296 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  374 (619)
                      .|..+++|++|++++|.+.......+... +.++.+... .+.++...+..+ +.+++|++|++++|.+....+..+..+
T Consensus        51 ~f~~l~~L~~L~ls~n~l~~i~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~  128 (284)
T d1ozna_          51 SFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGL  128 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             Hhhcccccccccccccccccccccccccc-ccccccccccccccccccchhh-cccccCCEEecCCcccccccccccchh
Confidence            35566677777777776666555544444 666676654 355666555444 668999999999999887777778889


Q ss_pred             CCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHh
Q 007082          375 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ  454 (619)
Q Consensus       375 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  454 (619)
                      ++|+.+++++|++++..+.            .|..+++|+.|++++|++++..+..|.++++|+.+++++|+++++.|..
T Consensus       129 ~~L~~l~l~~N~l~~i~~~------------~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDD------------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccchhhhccccccccChh------------HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhH
Confidence            9999999999999887776            7899999999999999999888889999999999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082          455 LSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  514 (619)
Q Consensus       455 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  514 (619)
                      |..+++|++|++++|++++..+..|..+++|+.|++++|+|.|+|...++..|.......
T Consensus       197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~  256 (284)
T d1ozna_         197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS  256 (284)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE
T ss_pred             hhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCC
Confidence            999999999999999999998889999999999999999999999999888887665544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.9e-23  Score=212.61  Aligned_cols=377  Identities=23%  Similarity=0.252  Sum_probs=206.6

Q ss_pred             CccEEeccCCCCCChHHHHHHhcCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhc----
Q 007082           66 NAEAIELRGENSVDAEWMAYLGAFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----  137 (619)
Q Consensus        66 ~l~~L~Ls~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~----  137 (619)
                      +|+.||+++++.-+..+.+.+..++++++|+|++|. +++.....    +..+++|++|+|++| .+++.+...+.    
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            689999999995556677788899999999999997 88766544    568899999999998 67766655554    


Q ss_pred             -CCCCCcEEEccCCCCChhH----HHHhhcCCCCCEEEcCCCCCChhHHHHhh-----cCCCCCEEEccCCccCchh---
Q 007082          138 -SISTLEKLWLSETGLTADG----IALLSSLQNLSVLDLGGLPVTDLVLRSLQ-----VLTKLEYLDLWGSQVSNRG---  204 (619)
Q Consensus       138 -~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~---  204 (619)
                       ...+|++|++++|.+++..    ...+..+++|++|++++|.+.+.....+.     ..............+....   
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             2357999999999987654    34566788999999999988765444442     2233444555444333211   


Q ss_pred             -hHhhcCCCCCCEEecCCCCCCCC---------C-CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchh---
Q 007082          205 -AAVLKMFPRLSFLNLAWTGVTKL---------P-NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER---  270 (619)
Q Consensus       205 -~~~~~~~~~L~~L~l~~n~l~~l---------~-~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~---  270 (619)
                       ...+.....++.+.++++.....         . .......+.+..+.+.                       ...   
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-----------------------~~~~~~  217 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT-----------------------SDNCRD  217 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB-----------------------TTHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------------chhhhc
Confidence             12234445566666655543310         0 1123344444444332                       111   


Q ss_pred             HHHhhhccCCCcEEeccCCCcchh-------hhhhcCCCCCEEeCcCCCCChhHHHHH----HhcCCCCcEEEccCCCCC
Q 007082          271 EAFLYIETSLLSFLDVSNSSLSRF-------CFLTQMKALEHLDLSSSMIGDDSVEMV----ACVGANLRNLNLSNTRFS  339 (619)
Q Consensus       271 ~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~L~~n~l~  339 (619)
                      ........+.++.+++.+|.+...       ........++.+++++|.+.......+    ... +.++.+++++|.++
T Consensus       218 ~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~-~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         218 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELG  296 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCH
T ss_pred             ccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence            001112334445555555443221       122234455555555555544332211    222 55555666555555


Q ss_pred             CchHHHHH----hcCCCCcEEEccCCCCChHHHHH----hhCCCCCcEEEccCCccCcchhccccchhhhhhHHhh-ccC
Q 007082          340 SAGVGILA----GHLPNLEILSLSGTQIDDYAISY----MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL-QNL  410 (619)
Q Consensus       340 ~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~-~~l  410 (619)
                      +.....+.    ...+.|+.+++++|.++......    +...++|++|+|++|++++....        .-.+.+ ...
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~--------~l~~~l~~~~  368 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR--------ELCQGLGQPG  368 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH--------HHHHHHTSTT
T ss_pred             ccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccc--------hhhhhhhccc
Confidence            43333221    12345666666666555443222    23445666666666665432110        000022 234


Q ss_pred             CcCCEEEccCCCCCCCC----cccccCCCCCCEEecCCCCCCchhHHhhc-----CCCCCCEEEcCCCccCchhh
Q 007082          411 NHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVSLHQLS-----SLSKLTNLSIRDAVLTNSGL  476 (619)
Q Consensus       411 ~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~  476 (619)
                      +.|++|+|++|.+++..    ...+..+++|++|+|++|++++.....+.     ....|+.|++.+|.+.....
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            45666666666665422    22334456666666666666654333321     23356677777666665433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=208.05  Aligned_cols=210  Identities=25%  Similarity=0.269  Sum_probs=172.8

Q ss_pred             CCcEEeccCCCcchhh-hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEc
Q 007082          280 LLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL  358 (619)
Q Consensus       280 ~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  358 (619)
                      .+.+++.+++.++.++ .+  .+++++|++++|.+++..+..+..+ ++|++|++++|+++....  + +.+++|++|++
T Consensus        11 ~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~L~~N~l~~l~~--~-~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQV--D-GTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEEC--C-SCCTTCCEEEC
T ss_pred             CCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhcc-cccccccccccccccccc--c-ccccccccccc
Confidence            3444555555555442 12  2567888888888877666666666 788888888888876542  2 46889999999


Q ss_pred             cCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCC
Q 007082          359 SGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI  438 (619)
Q Consensus       359 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  438 (619)
                      ++|+++... ..+..+++|++|++++|.+.+..+.            .+..+.++++|++++|.++...+..+..+++|+
T Consensus        85 s~N~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~------------~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          85 SHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             CSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccccccc-cccccccccccccccccccceeecc------------ccccccccccccccccccceeccccccccccch
Confidence            999988753 4577899999999999999887776            788999999999999999988888888999999


Q ss_pred             EEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082          439 HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  509 (619)
Q Consensus       439 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  509 (619)
                      .+++++|+++++.+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|++++|||.|+|.+.|+.+|..
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~  221 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ  221 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred             hcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHH
Confidence            9999999999999899999999999999999999 556777788999999999999999999999888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-22  Score=206.13  Aligned_cols=399  Identities=19%  Similarity=0.212  Sum_probs=269.1

Q ss_pred             CCccEEEcCCCCCCChHHHHH-hhCCCCCCEEeCCCCCCCChhhHhh----hcCCCCCcEEEccCCCCChhHHHHhhc--
Q 007082           90 RYLRSLNVADCRRVTSSALWA-LTGMTCLKELDLSRCVKVTDAGMKH----LLSISTLEKLWLSETGLTADGIALLSS--  162 (619)
Q Consensus        90 ~~L~~L~L~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~~~~----l~~l~~L~~L~L~~~~~~~~~~~~~~~--  162 (619)
                      ++|++|++++++ +++..+.. +..++++++|+|++| .+++.....    +..+++|++|+|++|.+++.....+..  
T Consensus         2 ~~l~~ld~~~~~-i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCc-CChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            368999998877 88776555 557899999999999 678766544    457899999999999987665544432  


Q ss_pred             ---CCCCCEEEcCCCCCChhH----HHHhhcCCCCCEEEccCCccCchhhHhhcCC-CCCCEEecCCCCCCCCCCCCCCc
Q 007082          163 ---LQNLSVLDLGGLPVTDLV----LRSLQVLTKLEYLDLWGSQVSNRGAAVLKMF-PRLSFLNLAWTGVTKLPNISSLE  234 (619)
Q Consensus       163 ---l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~l~~L~  234 (619)
                         ..+|++|++++|.+++..    +..+..+++|++|++++|.+++.....+... ..               ......
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~---------------~~~~~~  144 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD---------------PQCRLE  144 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS---------------TTCCCC
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccc---------------cccccc
Confidence               357999999999887653    4456678899999999998875443333210 00               001112


Q ss_pred             EEEcCCcccc-----ccccccCCCCCccEEeccCccccchhHHH----hhhccCCCcEEeccCCCcchh------hhhhc
Q 007082          235 CLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAF----LYIETSLLSFLDVSNSSLSRF------CFLTQ  299 (619)
Q Consensus       235 ~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~------~~~~~  299 (619)
                      ........+.     .+...+.....++.+.++++.........    ..........+++..+.+...      ..+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  224 (460)
T d1z7xw1         145 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS  224 (460)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence            2222222211     11222234566777777776655322111    112334567788888876543      45667


Q ss_pred             CCCCCEEeCcCCCCChhHHHH----HHhcCCCCcEEEccCCCCCCchHHHH---HhcCCCCcEEEccCCCCChHHHHHhh
Q 007082          300 MKALEHLDLSSSMIGDDSVEM----VACVGANLRNLNLSNTRFSSAGVGIL---AGHLPNLEILSLSGTQIDDYAISYMS  372 (619)
Q Consensus       300 ~~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~  372 (619)
                      .+.++.+++++|.+.+.....    .......++.+++++|.+.......+   ....+.++.+++++|.+++.....+.
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            899999999999876643322    22223789999999999887543322   24578999999999999876554432


Q ss_pred             -----CCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccc----cc-CCCCCCEEec
Q 007082          373 -----MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP----LS-TFKELIHLSL  442 (619)
Q Consensus       373 -----~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~L  442 (619)
                           ....|+.+++++|.++......        -...+...++|++|+|++|++++.....    +. ..+.|++|+|
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~--------l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSH--------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHH--------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccccccccccccccccchhhhhhhh--------cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence                 4568999999999887542220        0013567789999999999987543322    32 4578999999


Q ss_pred             CCCCCCchh----HHhhcCCCCCCEEEcCCCccCchhhccC----C-CCCCCcEEEcCCCccCC--HHHHHHHHHhCCCe
Q 007082          443 RNASLTDVS----LHQLSSLSKLTNLSIRDAVLTNSGLGSF----K-PPRSLKLLDLHGGWLLT--EDAILQFCKMHPRI  511 (619)
Q Consensus       443 ~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~-~~~~L~~l~l~~n~~~~--~~~~~~~~~~~~~~  511 (619)
                      ++|.+++..    ...+..+++|++|+|++|+++..+...+    . +...|+.+++.+|.+..  ...+.++.+..|.+
T Consensus       377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l  456 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL  456 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTS
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence            999998753    3456778999999999999997654433    2 33579999999999964  33556667777776


Q ss_pred             ee
Q 007082          512 EV  513 (619)
Q Consensus       512 ~~  513 (619)
                      .+
T Consensus       457 ~~  458 (460)
T d1z7xw1         457 RV  458 (460)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=3.3e-25  Score=217.74  Aligned_cols=247  Identities=17%  Similarity=0.201  Sum_probs=199.4

Q ss_pred             CCcEEEcCCcccc---ccccccCCCCCccEEeccC-ccccc-hhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCC
Q 007082          232 SLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFIN-EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE  304 (619)
Q Consensus       232 ~L~~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~-~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~  304 (619)
                      .++.|+++++.+.   .+|+.+..+++|++|++++ |.+.+ +|..  +.++++|++|++++|.+.+.  ..+..+++|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~--i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc--cccccccchhhhccccccccccccccchhhhc
Confidence            4566666666655   4677777788888888875 56653 4443  45778888888888887765  4577788899


Q ss_pred             EEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCC-CcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082          305 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPN-LEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (619)
Q Consensus       305 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  383 (619)
                      .+++++|.+.+..+..+..+ +.++.+++++|.+.+..+..+. .+.. ++.+++++|++++..+..+..+..+ .++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l-~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~  205 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLS  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECC
T ss_pred             ccccccccccccCchhhccC-cccceeeccccccccccccccc-cccccccccccccccccccccccccccccc-ccccc
Confidence            99999888777666677776 8999999999998876666663 4555 4899999999988877777766554 79999


Q ss_pred             CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCE
Q 007082          384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN  463 (619)
Q Consensus       384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  463 (619)
                      ++...+.+|.            .+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|++++.+|..|+.+++|++
T Consensus       206 ~~~~~~~~~~------------~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~  272 (313)
T d1ogqa_         206 RNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             SSEEEECCGG------------GCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             cccccccccc------------ccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCE
Confidence            9999888888            78899999999999999986654 6788999999999999999989999999999999


Q ss_pred             EEcCCCccCchhhccCCCCCCCcEEEcCCCccCC
Q 007082          464 LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       464 L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      |+|++|+++|.+|+ +..+++|+.+++++|+..|
T Consensus       273 L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         273 LNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             EECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            99999999998875 5778899999999999766

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.5e-23  Score=203.40  Aligned_cols=274  Identities=18%  Similarity=0.214  Sum_probs=160.9

Q ss_pred             CcEEEccCCCCChhHHHHhhcCCCCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCC
Q 007082          142 LEKLWLSETGLTADGIALLSSLQNLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAW  221 (619)
Q Consensus       142 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~  221 (619)
                      ++.++-++..++..+. .+  .+++++|+|++|+++...+..|.++++|++|++++|.+....+..|..+++|+.|++++
T Consensus        12 ~~~~~C~~~~L~~lP~-~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCC-CC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            3445555545554322 12  14566777777766666555666777777777777777666666676666666666666


Q ss_pred             CCCCCCC--CCCCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh----h
Q 007082          222 TGVTKLP--NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF----C  295 (619)
Q Consensus       222 n~l~~l~--~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~  295 (619)
                      |+++.++  ....++.|++.+|.+..++...+                        .....+..++...+.....    .
T Consensus        89 n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~------------------------~~~~~~~~l~~~~n~~~~~~~~~~  144 (305)
T d1xkua_          89 NQLKELPEKMPKTLQELRVHENEITKVRKSVF------------------------NGLNQMIVVELGTNPLKSSGIENG  144 (305)
T ss_dssp             SCCSBCCSSCCTTCCEEECCSSCCCBBCHHHH------------------------TTCTTCCEEECCSSCCCGGGBCTT
T ss_pred             CccCcCccchhhhhhhhhccccchhhhhhhhh------------------------hccccccccccccccccccCCCcc
Confidence            6666554  23455666666665554433222                        1222333333333322111    2


Q ss_pred             hhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCC
Q 007082          296 FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP  375 (619)
Q Consensus       296 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  375 (619)
                      .+..+++|+.+++++|                         .++....    ..+++|+.|++++|..+...+..+..++
T Consensus       145 ~~~~l~~L~~l~l~~n-------------------------~l~~l~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~  195 (305)
T d1xkua_         145 AFQGMKKLSYIRIADT-------------------------NITTIPQ----GLPPSLTELHLDGNKITKVDAASLKGLN  195 (305)
T ss_dssp             GGGGCTTCCEEECCSS-------------------------CCCSCCS----SCCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             ccccccccCccccccC-------------------------CccccCc----ccCCccCEEECCCCcCCCCChhHhhccc
Confidence            2334444444444444                         4433211    1255677777777766666666667777


Q ss_pred             CCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhh
Q 007082          376 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL  455 (619)
Q Consensus       376 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  455 (619)
                      .+++|++++|.+.+..+.            .+.++++|++|+|++|+++ .+|..|..+++|++|+|++|+|+.+....|
T Consensus       196 ~l~~L~~s~n~l~~~~~~------------~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             TCCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cccccccccccccccccc------------cccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhc
Confidence            777777777777766665            6777777777888777776 446677777788888888877777644443


Q ss_pred             ------cCCCCCCEEEcCCCccCc--hhhccCCCCCC
Q 007082          456 ------SSLSKLTNLSIRDAVLTN--SGLGSFKPPRS  484 (619)
Q Consensus       456 ------~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~  484 (619)
                            ...++|+.|+|++|++..  ..|..|..+..
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~  299 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV  299 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred             cCcchhcccCCCCEEECCCCcCccCcCCHhHhccccc
Confidence                  345778888888887753  34444544333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=1.6e-22  Score=197.67  Aligned_cols=264  Identities=19%  Similarity=0.215  Sum_probs=204.2

Q ss_pred             CCEEecCCCCCCCCCC--CCCCcEEEcCCccccccccc-cCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCC
Q 007082          214 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS  290 (619)
Q Consensus       214 L~~L~l~~n~l~~l~~--l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  290 (619)
                      .+.++-++++++++|.  .+++++|++++|.++.+++. +..+++|++|++++|.+..+++. .+..++.|+.|++++|.
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~-~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh-hhhCCCccCEecccCCc
Confidence            3445555555655552  25677777777777777764 44777788888887777766543 35567888888888887


Q ss_pred             cchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCC--chHHHHHhcCCCCcEEEccCCCCChHHH
Q 007082          291 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYAI  368 (619)
Q Consensus       291 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~  368 (619)
                      ++.++. .....++.|++..|.+.......+... ..+..++...+....  ..... +..+++|+.+++++|.+.....
T Consensus        91 l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~-~~~~~l~~~~n~~~~~~~~~~~-~~~l~~L~~l~l~~n~l~~l~~  167 (305)
T d1xkua_          91 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTIPQ  167 (305)
T ss_dssp             CSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSCCS
T ss_pred             cCcCcc-chhhhhhhhhccccchhhhhhhhhhcc-ccccccccccccccccCCCccc-cccccccCccccccCCccccCc
Confidence            776632 234678899999998888777666655 778888888775443  22223 3568999999999999876532


Q ss_pred             HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCC
Q 007082          369 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT  448 (619)
Q Consensus       369 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  448 (619)
                         ..+++|++|++++|...+..+.            .|.+++.+++|++++|.+++..+..+..+++|++|+|++|+++
T Consensus       168 ---~~~~~L~~L~l~~n~~~~~~~~------------~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         168 ---GLPPSLTELHLDGNKITKVDAA------------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             ---SCCTTCSEEECTTSCCCEECTG------------GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ---ccCCccCEEECCCCcCCCCChh------------Hhhccccccccccccccccccccccccccccceeeeccccccc
Confidence               3478999999999999888877            8999999999999999999888889999999999999999999


Q ss_pred             chhHHhhcCCCCCCEEEcCCCccCchhhccCC------CCCCCcEEEcCCCccCC
Q 007082          449 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK------PPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       449 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~L~~l~l~~n~~~~  497 (619)
                      .+ |..|..+++|++|+|++|+|+......|.      ...+|+.+++++|||.+
T Consensus       233 ~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         233 KV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cc-ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            86 56899999999999999999987555443      35789999999999854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=1.4e-24  Score=213.20  Aligned_cols=161  Identities=14%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             hhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCC
Q 007082          297 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS  376 (619)
Q Consensus       297 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  376 (619)
                      +..+++++.+++++|.+.+..+..+......++.+++++|++++..+..+ +.+ ....+++..+.+.+..+..+..+++
T Consensus       145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~-~~l-~~~~l~l~~~~~~~~~~~~~~~~~~  222 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANL-NLAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGC-CCSEEECCSSEEEECCGGGCCTTSC
T ss_pred             hccCcccceeeccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccccccccccc
Confidence            34455555555555555544444444442233666666666666544443 333 3446777777777777777777888


Q ss_pred             CcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhc
Q 007082          377 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS  456 (619)
Q Consensus       377 L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  456 (619)
                      ++.+++++|.+.+.++.             +..+++|+.|+|++|++++.+|..|+.+++|++|+|++|+++|.+| .++
T Consensus       223 l~~l~~~~~~l~~~~~~-------------~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~  288 (313)
T d1ogqa_         223 TQKIHLAKNSLAFDLGK-------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG  288 (313)
T ss_dssp             CSEEECCSSEECCBGGG-------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CST
T ss_pred             ccccccccccccccccc-------------cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-Ccc
Confidence            88888888888776553             6677888888888888888888888888888888888888887666 356


Q ss_pred             CCCCCCEEEcCCCc-cCc
Q 007082          457 SLSKLTNLSIRDAV-LTN  473 (619)
Q Consensus       457 ~l~~L~~L~L~~n~-l~~  473 (619)
                      .+++|+.+++++|+ +.|
T Consensus       289 ~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TGGGSCGGGTCSSSEEES
T ss_pred             cCCCCCHHHhCCCccccC
Confidence            77888888888886 444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3e-21  Score=186.26  Aligned_cols=218  Identities=19%  Similarity=0.270  Sum_probs=153.6

Q ss_pred             cCCCCCCCCCC-C-CCCcEEEcCCcccccccccc-CCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhh
Q 007082          219 LAWTGVTKLPN-I-SSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC  295 (619)
Q Consensus       219 l~~n~l~~l~~-l-~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  295 (619)
                      .++++++.+|. + +++++|+|++|.++.+++.. ..+++|+.|++++|.+..++.                       .
T Consensus        18 c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-----------------------~   74 (284)
T d1ozna_          18 CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----------------------A   74 (284)
T ss_dssp             CCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----------------------T
T ss_pred             cCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-----------------------c
Confidence            34444444431 1 34566666666666665432 255555555555555444332                       2


Q ss_pred             hhhcCCCCCEEeCc-CCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCC
Q 007082          296 FLTQMKALEHLDLS-SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM  374 (619)
Q Consensus       296 ~~~~~~~L~~L~l~-~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  374 (619)
                      .+..++.++.+.+. .+.+++..+..+..+ ++|++|++++|.+.......+ +.+++|+.+++++|++++.++..|..+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~l~l~~N~l~~i~~~~f~~~  152 (284)
T d1ozna_          75 AFTGLALLEQLDLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDL  152 (284)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccccccccccccccccccccccchhhccc-ccCCEEecCCccccccccccc-chhcccchhhhccccccccChhHhccc
Confidence            34445666666554 345555555555555 778888888877766544433 557788888888888888777778888


Q ss_pred             CCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHh
Q 007082          375 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ  454 (619)
Q Consensus       375 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  454 (619)
                      ++|++|++++|++.+..+.            .|.++++|+++++++|++++..|..|..+++|++|++++|.+++..+..
T Consensus       153 ~~L~~L~l~~N~l~~l~~~------------~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~  220 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (284)
T ss_dssp             TTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             cchhhcccccCcccccchh------------hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc
Confidence            8889999998888877776            7888889999999999888888888888889999999999988888888


Q ss_pred             hcCCCCCCEEEcCCCccCc
Q 007082          455 LSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       455 ~~~l~~L~~L~L~~n~l~~  473 (619)
                      |..+++|++|++++|++..
T Consensus       221 ~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         221 LAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             HTTCTTCCEEECCSSCEEC
T ss_pred             cccccccCEEEecCCCCCC
Confidence            8888899999999888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-20  Score=178.82  Aligned_cols=197  Identities=16%  Similarity=0.185  Sum_probs=116.3

Q ss_pred             CcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCC
Q 007082          233 LECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSM  312 (619)
Q Consensus       233 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~  312 (619)
                      +.+++.++++++.+|+.+.  +++++|++++|.+..++.. .+..+++|++|++++|.++.++.+..+++|++|++++  
T Consensus        12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~--   86 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH--   86 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCS--
T ss_pred             CeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHH-Hhhcccccccccccccccccccccccccccccccccc--
Confidence            3444455555555544432  3445555555554444332 2233444444444444444333333444444444444  


Q ss_pred             CChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchh
Q 007082          313 IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQ  392 (619)
Q Consensus       313 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  392 (619)
                                             |+++....  .+..+++|+.|++++|.+....+..+..+.++++|++++|.+....+
T Consensus        87 -----------------------N~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          87 -----------------------NQLQSLPL--LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             -----------------------SCCSSCCC--CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             -----------------------cccccccc--ccccccccccccccccccceeeccccccccccccccccccccceecc
Confidence                                   44433211  12446677777777776666555566677777777777777776655


Q ss_pred             ccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          393 QVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       393 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      .            .+..+++|+.+++++|++++..+..|..+++|++|+|++|+|+.+ |..+..+++|+.|+|++|++.
T Consensus       142 ~------------~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         142 G------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             T------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred             c------------cccccccchhcccccccccccCccccccccccceeecccCCCccc-ChhHCCCCCCCEEEecCCCCC
Confidence            5            567777777777777777777667777777788888888777753 445556777888888877764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=4.6e-17  Score=161.90  Aligned_cols=312  Identities=19%  Similarity=0.189  Sum_probs=173.1

Q ss_pred             CccEEEcCCCCCCChHHHHHhhCCCCCCEEeCCCCCCCChhhHhhhcCCCCCcEEEccCCCCChhHHHHhhcC-CCCCEE
Q 007082           91 YLRSLNVADCRRVTSSALWALTGMTCLKELDLSRCVKVTDAGMKHLLSISTLEKLWLSETGLTADGIALLSSL-QNLSVL  169 (619)
Q Consensus        91 ~L~~L~L~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L  169 (619)
                      ++++|+|+++. ++.. +   .-.++|++|+|++| .++.. +.   .+.+|++|++++|.++..     ..+ +.|++|
T Consensus        39 ~l~~LdLs~~~-L~~l-p---~~~~~L~~L~Ls~N-~l~~l-p~---~~~~L~~L~l~~n~l~~l-----~~lp~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLG-LSSL-P---ELPPHLESLVASCN-SLTEL-PE---LPQSLKSLLVDNNNLKAL-----SDLPPLLEYL  103 (353)
T ss_dssp             TCSEEECTTSC-CSCC-C---SCCTTCSEEECCSS-CCSSC-CC---CCTTCCEEECCSSCCSCC-----CSCCTTCCEE
T ss_pred             CCCEEEeCCCC-CCCC-C---CCCCCCCEEECCCC-CCccc-cc---chhhhhhhhhhhcccchh-----hhhccccccc
Confidence            56777777665 4321 1   12356666666666 44422 21   234566666666555432     122 235555


Q ss_pred             EcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCC-CCCCCcEEEcCCcccccccc
Q 007082          170 DLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLP-NISSLECLNLSNCTIDSILE  248 (619)
Q Consensus       170 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~l~~L~~L~l~~~~l~~l~~  248 (619)
                      ++++|.+... | .++.+++|++|+++++.+                        ...+ ....+..+.+..+..... .
T Consensus       104 ~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~------------------------~~~~~~~~~l~~l~~~~~~~~~~-~  156 (353)
T d1jl5a_         104 GVSNNQLEKL-P-ELQNSSFLKIIDVDNNSL------------------------KKLPDLPPSLEFIAAGNNQLEEL-P  156 (353)
T ss_dssp             ECCSSCCSSC-C-CCTTCTTCCEEECCSSCC------------------------SCCCCCCTTCCEEECCSSCCSSC-C
T ss_pred             cccccccccc-c-chhhhccceeeccccccc------------------------cccccccccccchhhcccccccc-c
Confidence            5555554433 1 234455555555555444                        3332 123344444443333221 2


Q ss_pred             ccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCC
Q 007082          249 GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL  328 (619)
Q Consensus       249 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L  328 (619)
                      .+..++.++.+++.++.....+.     .....+.+....+.+...+....++.|+.+++++|......     ....++
T Consensus       157 ~l~~l~~l~~L~l~~n~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-----~~~~~l  226 (353)
T d1jl5a_         157 ELQNLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-----DLPPSL  226 (353)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-----SCCTTC
T ss_pred             cccccccceeccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccc-----cccccc
Confidence            22344455555555554443222     11223445555555555555666788888888887655322     112677


Q ss_pred             cEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhc
Q 007082          329 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ  408 (619)
Q Consensus       329 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~  408 (619)
                      ..+.+.++.+....     ...+.+...++..+.+.+..    .-.......++..+.+.+.                ..
T Consensus       227 ~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~~~~~----------------~~  281 (353)
T d1jl5a_         227 EALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSL----------------CD  281 (353)
T ss_dssp             CEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEE----------------CC
T ss_pred             cccccccccccccc-----cccccccccccccccccccc----cccchhcccccccCccccc----------------cc
Confidence            88888887776532     23566777777776665421    1123455666766666543                23


Q ss_pred             cCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEE
Q 007082          409 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLL  488 (619)
Q Consensus       409 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  488 (619)
                      .+++|++|++++|+++ .+|.   .+++|+.|+|++|+|+.+.    ..+++|++|++++|+++.. |..   ..+|+.|
T Consensus       282 ~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~l~----~~~~~L~~L~L~~N~L~~l-p~~---~~~L~~L  349 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREF-PDI---PESVEDL  349 (353)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CCC---CTTCCEE
T ss_pred             cCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCccc----cccCCCCEEECcCCcCCCC-Ccc---ccccCee
Confidence            4578999999999888 4453   3678999999999988753    2356899999999998753 432   2456766


Q ss_pred             EcC
Q 007082          489 DLH  491 (619)
Q Consensus       489 ~l~  491 (619)
                      .+.
T Consensus       350 ~~~  352 (353)
T d1jl5a_         350 RMN  352 (353)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.7e-17  Score=156.56  Aligned_cols=215  Identities=20%  Similarity=0.199  Sum_probs=133.0

Q ss_pred             CCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh--hhhhcCCCCCEEeCcCC-CCChhHHHHHHhcCCCC
Q 007082          252 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS-MIGDDSVEMVACVGANL  328 (619)
Q Consensus       252 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L  328 (619)
                      ...+|++|+++++.+........+..+++|++|++++|.++..  ..+..+++|++|++++| .+++.....+...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3345555555555544333222344566666666666665443  45666778888888774 57776666665555788


Q ss_pred             cEEEccCC-CCCCchHH-HHHhcCCCCcEEEccCC--CCChHHHHH-hhCCCCCcEEEccCCc-cCcchhccccchhhhh
Q 007082          329 RNLNLSNT-RFSSAGVG-ILAGHLPNLEILSLSGT--QIDDYAISY-MSMMPSLKFIDISNTD-IKGFIQQVGAETDLVL  402 (619)
Q Consensus       329 ~~L~L~~n-~l~~~~~~-~~~~~~~~L~~L~l~~n--~l~~~~~~~-~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~~~  402 (619)
                      ++|++++| .+++.... .+...+++|+.|+++++  .+++..... ..++++|++|++++|. +++....         
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~---------  194 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---------  194 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG---------
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh---------
Confidence            88888875 45554333 23344577888888874  355543333 3467888888888764 5544444         


Q ss_pred             hHHhhccCCcCCEEEccCC-CCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCC
Q 007082          403 SLTALQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP  481 (619)
Q Consensus       403 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  481 (619)
                         .+..+++|++|++++| .+++.....++.+++|+.|++++|--.+........+|+|+   +..+.+++..+..++.
T Consensus       195 ---~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         195 ---EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             ---GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             ---hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence               5677888888888886 67766666777788888888888722222333334566654   4667777665555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.3e-17  Score=154.64  Aligned_cols=188  Identities=20%  Similarity=0.345  Sum_probs=143.8

Q ss_pred             hccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcE
Q 007082          276 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI  355 (619)
Q Consensus       276 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  355 (619)
                      ..+.+|+.|++.+|.++.+..++.+++|++|++++|.+++..+  +..+ ++++.+++++|.++...  .+ ..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l-~~l~~l~~~~n~~~~i~--~l-~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLKNVS--AI-AGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCSCCG--GG-TTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--cccc-ccccccccccccccccc--cc-cccccccc
Confidence            3567788888888888777777888888888888888876543  4444 78888888888877653  23 46888888


Q ss_pred             EEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCC
Q 007082          356 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK  435 (619)
Q Consensus       356 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  435 (619)
                      ++++++...+..  .+...+.++.+.++++.+....              .+..+++|++|++++|.+.+.  ..+.+++
T Consensus       112 l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~L~~L~l~~n~~~~~--~~l~~l~  173 (227)
T d1h6ua2         112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--------------PLAGLTNLQYLSIGNAQVSDL--TPLANLS  173 (227)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             cccccccccccc--hhccccchhhhhchhhhhchhh--------------hhccccccccccccccccccc--hhhcccc
Confidence            888888777653  3567788888888888776543              356778899999998888653  3477888


Q ss_pred             CCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcC
Q 007082          436 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  491 (619)
Q Consensus       436 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~  491 (619)
                      +|+.|+|++|+++++.  .++.+++|++|+|++|++++..  .+..+++|+.|+++
T Consensus       174 ~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         174 KLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             cceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            9999999999888754  4788899999999999988764  36778889988886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=9.3e-17  Score=159.62  Aligned_cols=295  Identities=17%  Similarity=0.191  Sum_probs=161.6

Q ss_pred             CCCEEEcCCCCCChhHHHHhhcCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCCCCCCC-CCcEEEcCCccc
Q 007082          165 NLSVLDLGGLPVTDLVLRSLQVLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTKLPNIS-SLECLNLSNCTI  243 (619)
Q Consensus       165 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~l~~l~-~L~~L~l~~~~l  243 (619)
                      ++++|+|+++.++.. |+   ..++|++|++++|+|+.. |..   ..+|+.|++.+|+++.++.++ .|++|++++|.+
T Consensus        39 ~l~~LdLs~~~L~~l-p~---~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l  110 (353)
T d1jl5a_          39 QAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL  110 (353)
T ss_dssp             TCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCC
T ss_pred             CCCEEEeCCCCCCCC-CC---CCCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccchhhhhcccccccccccccc
Confidence            455555555555432 21   234556666666655532 321   345666666666666555543 466777777766


Q ss_pred             cccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHh
Q 007082          244 DSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVAC  323 (619)
Q Consensus       244 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  323 (619)
                      ..+|. ...+++|+.|+++++.+...+.     ....+..+.+..+.......+..++.++.+.+.+|.......     
T Consensus       111 ~~lp~-~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~-----  179 (353)
T d1jl5a_         111 EKLPE-LQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD-----  179 (353)
T ss_dssp             SSCCC-CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC-----
T ss_pred             ccccc-hhhhccceeecccccccccccc-----ccccccchhhccccccccccccccccceeccccccccccccc-----
Confidence            66654 3456677777776666654433     234556666666555555555666677777777665543211     


Q ss_pred             cCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhcccc-c--hhh
Q 007082          324 VGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGA-E--TDL  400 (619)
Q Consensus       324 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~--~~~  400 (619)
                      .....+.+...++.+.....  + ..++.|+.+++++|......    ....++..+.+.++.+......... .  ...
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~--~-~~l~~L~~l~l~~n~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~  252 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPE--L-QNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPELPQSLTFLDVS  252 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCC--C-TTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             cccccccccccccccccccc--c-cccccccccccccccccccc----cccccccccccccccccccccccccccccccc
Confidence            11334455555444433211  1 34566677776666554321    2345566666666555432111000 0  000


Q ss_pred             hhhHHhhccC-CcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccC
Q 007082          401 VLSLTALQNL-NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF  479 (619)
Q Consensus       401 ~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  479 (619)
                      ......+..+ ......++..+.+.+    ....+++|++|+|++|+++.++    ..+++|+.|+|++|+|+.. |.. 
T Consensus       253 ~~~~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~L~~l-~~~-  322 (353)
T d1jl5a_         253 ENIFSGLSELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV-PEL-  322 (353)
T ss_dssp             SSCCSEESCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CCC-
T ss_pred             cccccccccccchhcccccccCcccc----ccccCCCCCEEECCCCccCccc----cccCCCCEEECCCCcCCcc-ccc-
Confidence            0000001111 223444555554432    2234689999999999998754    2468999999999999854 432 


Q ss_pred             CCCCCCcEEEcCCCccCC
Q 007082          480 KPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       480 ~~~~~L~~l~l~~n~~~~  497 (619)
                        +++|+.|++++|++..
T Consensus       323 --~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         323 --PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             --CTTCCEEECCSSCCSS
T ss_pred             --cCCCCEEECcCCcCCC
Confidence              4689999999999743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.4e-18  Score=156.38  Aligned_cols=148  Identities=15%  Similarity=0.181  Sum_probs=129.6

Q ss_pred             CcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCccccc
Q 007082          353 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS  432 (619)
Q Consensus       353 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  432 (619)
                      .+.++.++++++.++. .+  .+++++|+|++|++++.++..           .|.++++|++|+|++|.+....+..|.
T Consensus        10 ~~~v~Cs~~~L~~iP~-~l--p~~l~~L~Ls~N~i~~~~~~~-----------~f~~l~~L~~L~L~~N~i~~~~~~~~~   75 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDG-----------LFGRLPHLVKLELKRNQLTGIEPNAFE   75 (192)
T ss_dssp             TTEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSC-----------SGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             CCEEEEeCCCcCccCC-CC--CCCCCEEEeCCCCCccccccc-----------ccCCCceEeeeeccccccccccccccc
Confidence            4678888888886543 22  368999999999998755442           689999999999999999999999999


Q ss_pred             CCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCee
Q 007082          433 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE  512 (619)
Q Consensus       433 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~  512 (619)
                      .+++|++|+|++|+++++.+..|.++++|++|+|++|+|++..+..|..+++|+++++++|+|.|+|...++..|.....
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~  155 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS  155 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHC
T ss_pred             cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888765544


Q ss_pred             ee
Q 007082          513 VW  514 (619)
Q Consensus       513 ~~  514 (619)
                      ..
T Consensus       156 l~  157 (192)
T d1w8aa_         156 LN  157 (192)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=9.1e-18  Score=155.60  Aligned_cols=185  Identities=24%  Similarity=0.408  Sum_probs=101.9

Q ss_pred             CCCcEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcC
Q 007082          231 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS  310 (619)
Q Consensus       231 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  310 (619)
                      .+|++|++.+|.++.+ +++..+++|++|++++|.+.+..+   +..+++++++++++|.++.++.+..+++|+.+++++
T Consensus        41 ~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             CCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc---cccccccccccccccccccccccccccccccccccc
Confidence            4455555555555544 234455555555555555544332   234455555555555554444444455555555554


Q ss_pred             CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcc
Q 007082          311 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF  390 (619)
Q Consensus       311 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~  390 (619)
                      +..                         .+...  + ...+.+..+.++++.+....  .+..+++|++|++++|.+.+.
T Consensus       117 ~~~-------------------------~~~~~--~-~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~  166 (227)
T d1h6ua2         117 TQI-------------------------TDVTP--L-AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL  166 (227)
T ss_dssp             SCC-------------------------CCCGG--G-TTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             ccc-------------------------cccch--h-ccccchhhhhchhhhhchhh--hhccccccccccccccccccc
Confidence            443                         33211  1 23455555666555554432  244566666666666665433


Q ss_pred             hhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcC
Q 007082          391 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR  467 (619)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  467 (619)
                      .              .++++++|++|++++|++++.  ..+..+++|++|+|++|+++++.  .++++++|+.|+++
T Consensus       167 ~--------------~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         167 T--------------PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             G--------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             h--------------hhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            2              355667777777777776642  23666777777777777777654  36677777777775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.2e-16  Score=153.06  Aligned_cols=200  Identities=22%  Similarity=0.302  Sum_probs=99.3

Q ss_pred             CCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCC-CCChHHHHH-hhCCCCCc
Q 007082          301 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISY-MSMMPSLK  378 (619)
Q Consensus       301 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~~~~L~  378 (619)
                      .+|++|+++++.+++.....+...+++|++|++++|.+++..+..+ +.+++|++|++++| .+++..... ...+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3555555555555544444443333555555555555555444444 33555555555553 344332222 23455555


Q ss_pred             EEEccCCc-cCcc-hhccccchhhhhhHHhhccCCcCCEEEccCC--CCCCCCcc-cccCCCCCCEEecCCC-CCCchhH
Q 007082          379 FIDISNTD-IKGF-IQQVGAETDLVLSLTALQNLNHLERLNLEQT--QVSDATLF-PLSTFKELIHLSLRNA-SLTDVSL  452 (619)
Q Consensus       379 ~L~L~~n~-~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~  452 (619)
                      +|++++|. ++.. +..           .....+++|+.|+++++  .+++.... .+..+++|++|++++| .+++...
T Consensus       125 ~L~ls~c~~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQV-----------AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             EEECCCCTTCCHHHHHH-----------HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             ccccccccccccccchh-----------hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhh
Confidence            55555542 2211 000           01122345555555553  23221111 1234556666666654 3555555


Q ss_pred             HhhcCCCCCCEEEcCCC-ccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCCCeeee
Q 007082          453 HQLSSLSKLTNLSIRDA-VLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW  514 (619)
Q Consensus       453 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  514 (619)
                      ..+..+++|++|+|++| .+++.....+..+++|+.|++++|  ..+..+..+.+..|.+++.
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i~  254 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQIN  254 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEES
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCcccccc
Confidence            55556666666666663 455555555556666667776666  3444555566666666653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.2e-16  Score=145.71  Aligned_cols=164  Identities=23%  Similarity=0.378  Sum_probs=104.9

Q ss_pred             CCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcE
Q 007082          300 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF  379 (619)
Q Consensus       300 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  379 (619)
                      +.+|++|++++|.+++..  .+..+ ++|++|++++|++++..+  + +.+++|++|++++|++++..  .+..+++|+.
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l-~~L~~L~L~~n~i~~l~~--~-~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIKP--L-ANLKNLGWLFLDENKVKDLS--SLKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCGG--G-TTCTTCCEEECCSSCCCCGG--GGTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCch--hHhhC-CCCCEEeCCCccccCccc--c-ccCccccccccccccccccc--cccccccccc
Confidence            445666666666655432  13333 666666666666666432  2 45677777777777776643  3666777777


Q ss_pred             EEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCC
Q 007082          380 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS  459 (619)
Q Consensus       380 L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  459 (619)
                      |++++|.+....              .+.++++++.+++++|.+++  +..+..+++|+++++++|+++++.  .+.+++
T Consensus       117 L~l~~~~~~~~~--------------~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~  178 (210)
T d1h6ta2         117 LSLEHNGISDIN--------------GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLT  178 (210)
T ss_dssp             EECTTSCCCCCG--------------GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred             cccccccccccc--------------cccccccccccccccccccc--cccccccccccccccccccccccc--cccCCC
Confidence            777777664321              45667777777777777764  234556777777777777777643  366777


Q ss_pred             CCCEEEcCCCccCchhhccCCCCCCCcEEEcC
Q 007082          460 KLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLH  491 (619)
Q Consensus       460 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~  491 (619)
                      +|++|++++|++++. + .+..+++|++|+++
T Consensus       179 ~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         179 KLQNLYLSKNHISDL-R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred             CCCEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence            777777777777653 2 46667777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2e-16  Score=142.90  Aligned_cols=162  Identities=24%  Similarity=0.356  Sum_probs=95.6

Q ss_pred             cCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCc
Q 007082          299 QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK  378 (619)
Q Consensus       299 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  378 (619)
                      .++++++|++++|.++..  ..+..+ ++|++|++++|++++..+  + +.+++|++|++++|.+....  .+.+++.|+
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l-~nL~~L~Ls~N~l~~~~~--l-~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYL-NNLTQINFSNNQLTDITP--L-KNLTKLVDILMNNNQIADIT--PLANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECCSSCCCCCGG--G-TTCTTCCEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCCc--cccccC-CCcCcCccccccccCccc--c-cCCccccccccccccccccc--ccccccccc
Confidence            345555566555555432  122333 566666666666665433  2 45666666766666665543  256666777


Q ss_pred             EEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCC
Q 007082          379 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL  458 (619)
Q Consensus       379 ~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  458 (619)
                      +|++++|......              .+..+++|+.|++++|++..  ...+..+++|+.|++++|++++..  .++++
T Consensus       110 ~L~l~~~~~~~~~--------------~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l  171 (199)
T d2omxa2         110 GLTLFNNQITDID--------------PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLK--PLANL  171 (199)
T ss_dssp             EEECCSSCCCCCG--------------GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred             ccccccccccccc--------------ccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCc--cccCC
Confidence            7777666655432              35566677777777776653  234566677777777777776643  36667


Q ss_pred             CCCCEEEcCCCccCchhhccCCCCCCCcEE
Q 007082          459 SKLTNLSIRDAVLTNSGLGSFKPPRSLKLL  488 (619)
Q Consensus       459 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l  488 (619)
                      ++|++|++++|++++..  .+..+++|+.|
T Consensus       172 ~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         172 TTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             TTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             CCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            77777777777766532  34555666543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.2e-16  Score=143.92  Aligned_cols=166  Identities=25%  Similarity=0.346  Sum_probs=138.2

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      .+.+|+.|++++|.++.+..++.+++|++|++++|.+++..+  +..+ ++|+.|++++|++++..  .+ ..+++|+.|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l-~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVKDLS--SL-KDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCGG--GG-TTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccC-ccccccccccccccccc--cc-ccccccccc
Confidence            456888899999988888778889999999999999887553  3444 89999999999998854  23 568999999


Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      ++++|.+....  .+..++.++.+++++|.+++..              .+..+++|+++++++|++++..  .+..+++
T Consensus       118 ~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--------------~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~  179 (210)
T d1h6ta2         118 SLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--------------VLSRLTKLDTLSLEDNQISDIV--PLAGLTK  179 (210)
T ss_dssp             ECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCCCCG--GGTTCTT
T ss_pred             ccccccccccc--cccccccccccccccccccccc--------------cccccccccccccccccccccc--cccCCCC
Confidence            99999887643  4788999999999999987643              4677899999999999998643  4888999


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEEEcCC
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD  468 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  468 (619)
                      |++|+|++|+++++.  .+.++++|++|+|++
T Consensus       180 L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence            999999999999853  589999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.1e-16  Score=141.63  Aligned_cols=162  Identities=23%  Similarity=0.376  Sum_probs=135.3

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      .+.++++|++++|.++.++.++.+++|++|++++|.+++..+  +..+ ++|++|++++|.+.....  + +.+++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l-~~L~~L~l~~n~~~~~~~--l-~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIADITP--L-ANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCCCGG--G-TTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCC-cccccccccccccccccc--c-ccccccccc
Confidence            467888999999988888788889999999999999987553  5555 899999999998887643  3 679999999


Q ss_pred             EccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCC
Q 007082          357 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE  436 (619)
Q Consensus       357 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  436 (619)
                      ++++|.+....  .+..+++|+.|++++|++... +             .+..+++|++|++.+|++++.  ..+.++++
T Consensus       112 ~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~-------------~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~  173 (199)
T d2omxa2         112 TLFNNQITDID--PLKNLTNLNRLELSSNTISDI-S-------------ALSGLTSLQQLNFSSNQVTDL--KPLANLTT  173 (199)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-G-------------GGTTCTTCSEEECCSSCCCCC--GGGTTCTT
T ss_pred             ccccccccccc--ccchhhhhHHhhhhhhhhccc-c-------------cccccccccccccccccccCC--ccccCCCC
Confidence            99999887653  477899999999999998653 2             478899999999999999864  35889999


Q ss_pred             CCEEecCCCCCCchhHHhhcCCCCCCEE
Q 007082          437 LIHLSLRNASLTDVSLHQLSSLSKLTNL  464 (619)
Q Consensus       437 L~~L~L~~n~l~~~~~~~~~~l~~L~~L  464 (619)
                      |++|++++|+++++.  .++.+++|++|
T Consensus       174 L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         174 LERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             CCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             CCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            999999999999854  57889999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.6e-17  Score=155.84  Aligned_cols=51  Identities=18%  Similarity=0.204  Sum_probs=22.2

Q ss_pred             EEecCCCCCCCCC-CC-CCCcEEEcCCccccccccccC-CCCCccEEeccCccc
Q 007082          216 FLNLAWTGVTKLP-NI-SSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTF  266 (619)
Q Consensus       216 ~L~l~~n~l~~l~-~l-~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~  266 (619)
                      .++.++..++.+| .+ +++++|++++|.++.++...+ ++++|++|++++|.+
T Consensus        12 ~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~   65 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV   65 (242)
T ss_dssp             EEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT
T ss_pred             EEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccc
Confidence            4444444444443 11 245555555555544444322 344444444444433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1.2e-17  Score=150.19  Aligned_cols=174  Identities=16%  Similarity=0.179  Sum_probs=117.5

Q ss_pred             CEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEcc
Q 007082          304 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS  383 (619)
Q Consensus       304 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  383 (619)
                      +.++.++++++..+. .   ..+++++|+|++|+++.......++.+++|++|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~~iP~-~---lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPR-D---IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCS-C---CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcCccCC-C---CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            355566655554321 1   125677777777777654333334667888888888888877777777778888888888


Q ss_pred             CCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhH-HhhcCCCCCC
Q 007082          384 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLT  462 (619)
Q Consensus       384 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  462 (619)
                      +|++++..+.            .|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+..... .++.  ..++
T Consensus        87 ~N~l~~l~~~------------~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~  152 (192)
T d1w8aa_          87 ENKIKEISNK------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLR  152 (192)
T ss_dssp             SCCCCEECSS------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHH
T ss_pred             cccccccCHH------------HHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhh
Confidence            8888777666            67888888888888888887777778888888888888887765422 1221  2344


Q ss_pred             EEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCH
Q 007082          463 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTE  498 (619)
Q Consensus       463 ~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~  498 (619)
                      .+.+..+.++...|..   +..++.++++.|.+.|.
T Consensus       153 ~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         153 KKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             HHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCC
T ss_pred             hhcccCCCeEeCCChh---hcCCEeeecCHhhCcCC
Confidence            5556666665544433   35667778888888773

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.63  E-value=1e-14  Score=144.03  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=45.0

Q ss_pred             HHhcCCCccEEEcCCCCCCChHHHHHhh----CCCCCCEEeCCCCCC--CChh-------hHhhhcCCCCCcEEEccCCC
Q 007082           85 YLGAFRYLRSLNVADCRRVTSSALWALT----GMTCLKELDLSRCVK--VTDA-------GMKHLLSISTLEKLWLSETG  151 (619)
Q Consensus        85 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~----~~~~L~~L~L~~~~~--l~~~-------~~~~l~~l~~L~~L~L~~~~  151 (619)
                      .+.....|+.|+|++|. +.+.....++    ..++|+.|+++++..  ..+.       ....+..+++|++|++++|.
T Consensus        26 ~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            34556666666666654 5555544432    445666666665521  1110       11223345555555555555


Q ss_pred             CChhHH----HHhhcCCCCCEEEcCCCCCC
Q 007082          152 LTADGI----ALLSSLQNLSVLDLGGLPVT  177 (619)
Q Consensus       152 ~~~~~~----~~~~~l~~L~~L~L~~n~~~  177 (619)
                      +.....    ..+..+++|++|++++|.+.
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             cccccccchhhhhcccccchheeccccccc
Confidence            544321    23334455555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.63  E-value=4.9e-15  Score=146.35  Aligned_cols=142  Identities=15%  Similarity=0.214  Sum_probs=79.7

Q ss_pred             cCCCCcEEEccCCCCChHHH----HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCC
Q 007082          349 HLPNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS  424 (619)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~  424 (619)
                      ..+.|+.+++++|.++....    ..+..++.|++|++++|.+...-...       .-...+..+++|+.|++++|.++
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~-------~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH-------LLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH-------HHHTTGGGCTTCCEEECCSSCCH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhccccccccccccccccc-------chhhhhcchhhhccccccccccc
Confidence            35566666666666553322    22345566666666666654320000       00013556667777777777664


Q ss_pred             CC----CcccccCCCCCCEEecCCCCCCchhHHhh----cC--CCCCCEEEcCCCccCchhhcc----C-CCCCCCcEEE
Q 007082          425 DA----TLFPLSTFKELIHLSLRNASLTDVSLHQL----SS--LSKLTNLSIRDAVLTNSGLGS----F-KPPRSLKLLD  489 (619)
Q Consensus       425 ~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~--l~~L~~L~L~~n~l~~~~~~~----~-~~~~~L~~l~  489 (619)
                      ..    +...+..+++|++|+|++|.+++.....+    ..  .+.|++|++++|+++......    + ...+.|+.|+
T Consensus       229 ~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  308 (344)
T d2ca6a1         229 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  308 (344)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEE
Confidence            32    22334566777777777777766533333    22  356777888887776543222    2 1346788888


Q ss_pred             cCCCccCC
Q 007082          490 LHGGWLLT  497 (619)
Q Consensus       490 l~~n~~~~  497 (619)
                      +++|.+..
T Consensus       309 l~~N~~~~  316 (344)
T d2ca6a1         309 LNGNRFSE  316 (344)
T ss_dssp             CTTSBSCT
T ss_pred             CCCCcCCC
Confidence            88888755

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-16  Score=148.67  Aligned_cols=217  Identities=11%  Similarity=0.081  Sum_probs=138.5

Q ss_pred             cEEEcCCccccccccccCCCCCccEEeccCccccchhHHHhhhccCCCcEEeccCCCcchh---hhhhcCCCCCEEeCcC
Q 007082          234 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSS  310 (619)
Q Consensus       234 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~L~l~~  310 (619)
                      +.++.++..++.+|+.++  +++++|++++|.+..++.. .+.++++|++|++++|.+...   ..+..++.++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTT-TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChh-Hhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            456666666666666554  4667777777777665543 345667777777777766443   3456667777776654


Q ss_pred             -CCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEEEccCCCCChHHHHHhhCCC-CCcEEEccCCccC
Q 007082          311 -SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMP-SLKFIDISNTDIK  388 (619)
Q Consensus       311 -n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~~~  388 (619)
                       |.+....+..+..+ ++|+.+++++|.+...........+..+..+...++.+.......+..++ .++.|++++|+++
T Consensus        88 ~n~l~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccccccc-ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence             45555554444444 77777777777776544333333445565666666667666555555543 6778888888887


Q ss_pred             cchhccccchhhhhhHHhhccCCcCCEE-EccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcC
Q 007082          389 GFIQQVGAETDLVLSLTALQNLNHLERL-NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR  467 (619)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  467 (619)
                      ...+.            .+.. ++++.+ .+++|+++...+..|.++++|++|+|++|+++.+++..|.++++|+.+++.
T Consensus       167 ~i~~~------------~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         167 EIHNC------------AFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECTT------------TTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccc------------cccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            65444            3433 444444 567777876656678888888888888888887766667766666665554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5e-15  Score=127.10  Aligned_cols=122  Identities=17%  Similarity=0.138  Sum_probs=101.5

Q ss_pred             CCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCC-CCCCCCcccccCCCCCCEEecCCCCCCchhH
Q 007082          374 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQT-QVSDATLFPLSTFKELIHLSLRNASLTDVSL  452 (619)
Q Consensus       374 ~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  452 (619)
                      +...+.++.+++.+... |.            .+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.+
T Consensus         7 c~~~~~l~c~~~~~~~~-p~------------~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   73 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDS-LH------------HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (156)
T ss_dssp             CSSSSCEECCSSCCCTT-TT------------TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             cCCCCeEEecCCCCccC-cc------------cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc
Confidence            34455677777776543 33            5777889999999876 5887777889999999999999999999989


Q ss_pred             HhhcCCCCCCEEEcCCCccCchhhccCCCCCCCcEEEcCCCccCCHHHHHHHHHhCC
Q 007082          453 HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP  509 (619)
Q Consensus       453 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  509 (619)
                      ..|..+++|++|+|++|+++...+..+... +|+.|++++|||.|+|.+.|+..|..
T Consensus        74 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~  129 (156)
T d2ifga3          74 DAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEE  129 (156)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             ccccccccccceeccCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHH
Confidence            999999999999999999997766666544 79999999999999999999988763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-14  Score=125.52  Aligned_cols=125  Identities=23%  Similarity=0.258  Sum_probs=60.8

Q ss_pred             CCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcc
Q 007082          350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF  429 (619)
Q Consensus       350 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  429 (619)
                      +.++++|++++|+++... ..+..+++|+.|++++|+++.. +             .|..+++|++|++++|+++...+.
T Consensus        17 ~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l-~-------------~~~~l~~L~~L~ls~N~i~~l~~~   81 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL-D-------------GFPLLRRLKTLLVNNNRICRIGEG   81 (162)
T ss_dssp             TTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE-C-------------CCCCCSSCCEEECCSSCCCEECSC
T ss_pred             cCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCcc-C-------------CcccCcchhhhhcccccccCCCcc
Confidence            344555555555554432 2234455555555555555432 1             244555555555555555543333


Q ss_pred             cccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCchh---hccCCCCCCCcEEE
Q 007082          430 PLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTNSG---LGSFKPPRSLKLLD  489 (619)
Q Consensus       430 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~L~~l~  489 (619)
                      .+..+++|+.|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|++||
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            34445555555555555554321 34455555555555555554321   11233345555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1.8e-13  Score=112.09  Aligned_cols=101  Identities=20%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             EEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCC
Q 007082          355 ILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF  434 (619)
Q Consensus       355 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  434 (619)
                      .|++++|+++...  .+..+++|++|++++|+++.. |.            .+..+++|++|++++|++++. + .+..+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~l-p~------------~~~~l~~L~~L~l~~N~i~~l-~-~~~~l   64 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRAL-PP------------ALAALRCLEVLQASDNALENV-D-GVANL   64 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCC-CG------------GGGGCTTCCEEECCSSCCCCC-G-GGTTC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcc-hh------------hhhhhhccccccccccccccc-C-ccccc
Confidence            4555555555432  244555555555555555432 22            345555555555555555532 2 35555


Q ss_pred             CCCCEEecCCCCCCchh-HHhhcCCCCCCEEEcCCCccC
Q 007082          435 KELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       435 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      ++|+.|++++|++++.. ...+..+++|+.|++++|+++
T Consensus        65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55555555555555432 234455555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.7e-13  Score=116.91  Aligned_cols=121  Identities=16%  Similarity=0.206  Sum_probs=68.9

Q ss_pred             cCCCCCEEEccCCccCchhhHhhcCCCCCCEEecCCCCCCC---CCCCCCCcEEEcCCccccccccccC-CCCCccEEec
Q 007082          186 VLTKLEYLDLWGSQVSNRGAAVLKMFPRLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISL  261 (619)
Q Consensus       186 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~---l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l  261 (619)
                      ++.++++|++++|+|+.. +..+..+++|+.|++++|.++.   ++.+++|++|++++|.++.+++.++ .+++|++|++
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            344455555555555433 2333444555555555555443   2345667777777777777666554 5677777777


Q ss_pred             cCccccchhHHHhhhccCCCcEEeccCCCcchhh-----hhhcCCCCCEEe
Q 007082          262 AGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-----FLTQMKALEHLD  307 (619)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~  307 (619)
                      ++|.+...+....+..+++|++|++++|.++..+     .+..+++|++||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            7777666554334455666666666666554432     345566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=4.8e-13  Score=109.48  Aligned_cols=103  Identities=21%  Similarity=0.332  Sum_probs=89.9

Q ss_pred             cEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCCCCchhHHhhcC
Q 007082          378 KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS  457 (619)
Q Consensus       378 ~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  457 (619)
                      |.|++++|+++.. +             .++++++|++|++++|+++ .+|..+..+++|+.|++++|.+++..  .+..
T Consensus         1 R~L~Ls~n~l~~l-~-------------~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~   63 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-------------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GVAN   63 (124)
T ss_dssp             SEEECTTSCCSSC-C-------------CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GGTT
T ss_pred             CEEEcCCCCCCCC-c-------------ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC--cccc
Confidence            5799999999854 2             4788999999999999998 56778999999999999999999864  5899


Q ss_pred             CCCCCEEEcCCCccCchh-hccCCCCCCCcEEEcCCCccCC
Q 007082          458 LSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLLT  497 (619)
Q Consensus       458 l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~  497 (619)
                      +++|++|++++|++++.. +..+..+++|+.+++++|++..
T Consensus        64 l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            999999999999998753 3567888999999999999854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.9e-13  Score=122.25  Aligned_cols=108  Identities=23%  Similarity=0.291  Sum_probs=53.3

Q ss_pred             cCCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc
Q 007082          349 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  428 (619)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  428 (619)
                      .+++|++|++++|+++...  .+..+++|++|++++|.++.. +.            .+..+++|++|++++|+++..  
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i-~~------------~~~~~~~L~~L~l~~N~i~~l--  108 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI-EN------------LDAVADTLEELWISYNQIASL--  108 (198)
T ss_dssp             HTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSC-SS------------HHHHHHHCCEEECSEEECCCH--
T ss_pred             cccccceeECcccCCCCcc--cccCCccccChhhcccccccc-cc------------ccccccccccccccccccccc--
Confidence            3555555555555554431  244455555555555555432 11            122334455555555555431  


Q ss_pred             ccccCCCCCCEEecCCCCCCchhH-HhhcCCCCCCEEEcCCCccCc
Q 007082          429 FPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLTNLSIRDAVLTN  473 (619)
Q Consensus       429 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  473 (619)
                      ..+..+++|+.|++++|+++.... ..+..+++|+.|+|++|++..
T Consensus       109 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         109 SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            234455555555555555555422 345555555555555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.8e-11  Score=102.44  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             CCCCcEEEccCCCCChHHHHHhhCCCCCcEEEccCCc-cCcchhccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCc
Q 007082          350 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL  428 (619)
Q Consensus       350 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  428 (619)
                      +...+.++.+++.+... |..+..+++|++|++++|+ ++...+.            .|.++++|+.|+|++|+|+...+
T Consensus         7 c~~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~------------~f~~l~~L~~L~Ls~N~l~~i~~   73 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELR------------DLRGLGELRNLTIVKSGLRFVAP   73 (156)
T ss_dssp             CSSSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGG------------GSCSCCCCSEEECCSSCCCEECT
T ss_pred             cCCCCeEEecCCCCccC-cccccCccccCeeecCCCccccccCch------------hhccccccCcceeeccccCCccc
Confidence            34456677777777654 3446678888888887664 6665555            78888889999999888887778


Q ss_pred             ccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          429 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       429 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      .+|..+++|++|+|++|+++.+.+..|... +|+.|+|++|++.
T Consensus        74 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          74 DAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            888888889999999998888777777654 6888999988874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=2.1e-12  Score=115.29  Aligned_cols=134  Identities=18%  Similarity=0.274  Sum_probs=80.6

Q ss_pred             ccCCCcEEeccCCCcchhhhhhcCCCCCEEeCcCCCCChhHHHHHHhcCCCCcEEEccCCCCCCchHHHHHhcCCCCcEE
Q 007082          277 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL  356 (619)
Q Consensus       277 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  356 (619)
                      .+++|++|++++|.++.++.+..+++|++|++++|.++.... ..... ++|+.|++++|+++...  .+ ..+++|+.|
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~-~~L~~L~l~~N~i~~l~--~~-~~l~~L~~L  120 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVA-DTLEELWISYNQIASLS--GI-EKLVNLRVL  120 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSS-HHHHH-HHCCEEECSEEECCCHH--HH-HHHHHSSEE
T ss_pred             cccccceeECcccCCCCcccccCCccccChhhcccccccccc-ccccc-ccccccccccccccccc--cc-ccccccccc
Confidence            455666666666666555556666777777777776654321 11112 56777777777777642  23 346778888


Q ss_pred             EccCCCCChHHH-HHhhCCCCCcEEEccCCccCcchhccccchhhhhhHHhhccCCcCCEEE
Q 007082          357 SLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN  417 (619)
Q Consensus       357 ~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  417 (619)
                      ++++|++++... ..+..+++|++|++++|++....+......  -.....+..+++|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~--~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS--EYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHH--HHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchh--hHHHHHHHHCCCcCEeC
Confidence            888887776543 457778888888888887755433311000  00011356778888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.43  E-value=9.1e-07  Score=75.56  Aligned_cols=110  Identities=13%  Similarity=0.174  Sum_probs=52.6

Q ss_pred             cCCCccEEEcCCCCCCChHHHHH----hhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCCCChhHHH-
Q 007082           88 AFRYLRSLNVADCRRVTSSALWA----LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGLTADGIA-  158 (619)
Q Consensus        88 ~~~~L~~L~L~~~~~~~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~~~~~~~~-  158 (619)
                      +.++|++|+|++++.++......    +...++|++|+|++| .+++.....++    ..+.|++|++++|.+++.... 
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34555555555443344443322    334455555555555 44444333322    345556666665555554332 


Q ss_pred             ---HhhcCCCCCEEEcCCCCCC---hh----HHHHhhcCCCCCEEEccCC
Q 007082          159 ---LLSSLQNLSVLDLGGLPVT---DL----VLRSLQVLTKLEYLDLWGS  198 (619)
Q Consensus       159 ---~~~~l~~L~~L~L~~n~~~---~~----~~~~~~~l~~L~~L~l~~n  198 (619)
                         ++...+.|++|++++|.+.   +.    +...+...+.|++|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence               3344455666666555322   11    2233344556666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.36  E-value=2.5e-06  Score=72.76  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=74.6

Q ss_pred             CCCCCCEEeCCCCCCCChhhHhh----hcCCCCCcEEEccCCCCChhHH----HHhhcCCCCCEEEcCCCCCChhHHH--
Q 007082          113 GMTCLKELDLSRCVKVTDAGMKH----LLSISTLEKLWLSETGLTADGI----ALLSSLQNLSVLDLGGLPVTDLVLR--  182 (619)
Q Consensus       113 ~~~~L~~L~L~~~~~l~~~~~~~----l~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~--  182 (619)
                      +.++|++|+|+++..+++.....    +...+.|++|++++|.+.+...    ..+...+.|++|++++|.+.+....  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            56899999999865677665543    4467889999999998876544    3455678899999998888776443  


Q ss_pred             --HhhcCCCCCEEEccCCccCch-------hhHhhcCCCCCCEEecCC
Q 007082          183 --SLQVLTKLEYLDLWGSQVSNR-------GAAVLKMFPRLSFLNLAW  221 (619)
Q Consensus       183 --~~~~l~~L~~L~l~~n~i~~~-------~~~~~~~~~~L~~L~l~~  221 (619)
                        .+...+.|++|++++|.+...       +...+...++|+.|+++.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence              345667888888887754422       233344455555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.3e-08  Score=84.39  Aligned_cols=65  Identities=20%  Similarity=0.141  Sum_probs=30.5

Q ss_pred             ccCCcCCEEEccCCCCCCCC--cccccCCCCCCEEecCCCCCCchhHHhhcCCCCCCEEEcCCCccC
Q 007082          408 QNLNHLERLNLEQTQVSDAT--LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT  472 (619)
Q Consensus       408 ~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  472 (619)
                      ..+++|++|+|++|+++...  +..+..+++|+.|+|++|.++.+.+-.+.....|+.|++++|+++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34455555555555554322  223344555555555555555543322233334555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.21  E-value=6e-06  Score=70.31  Aligned_cols=111  Identities=20%  Similarity=0.164  Sum_probs=54.2

Q ss_pred             hcCCCccEEEcCCCCCCChHHHHHh----hCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCCCChhHH-
Q 007082           87 GAFRYLRSLNVADCRRVTSSALWAL----TGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGLTADGI-  157 (619)
Q Consensus        87 ~~~~~L~~L~L~~~~~~~~~~~~~l----~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~~~~~~~-  157 (619)
                      .+.++|++|+|++++.++......+    ..+++|++|++++| .+++.....++    ..+.++.+++++|.+..... 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3445555565555433544443332    24455666666655 44444433332    34555566665555554432 


Q ss_pred             ---HHhhcCCCCCEEEcC--CCCCChhH----HHHhhcCCCCCEEEccCC
Q 007082          158 ---ALLSSLQNLSVLDLG--GLPVTDLV----LRSLQVLTKLEYLDLWGS  198 (619)
Q Consensus       158 ---~~~~~l~~L~~L~L~--~n~~~~~~----~~~~~~l~~L~~L~l~~n  198 (619)
                         ..+...+.|+.++|.  +|.+.+..    ...+...+.|++|++..+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence               233445556554443  34444422    223345566666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.8e-07  Score=76.90  Aligned_cols=89  Identities=21%  Similarity=0.185  Sum_probs=57.2

Q ss_pred             HHhhCCCCCcEEEccCCccCcch--hccccchhhhhhHHhhccCCcCCEEEccCCCCCCCCcccccCCCCCCEEecCCCC
Q 007082          369 SYMSMMPSLKFIDISNTDIKGFI--QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS  446 (619)
Q Consensus       369 ~~~~~~~~L~~L~L~~n~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  446 (619)
                      ..+..+++|++|+|++|+++...  +.            .+..+++|+.|+|++|.+++...-.+.....|+.|++++|.
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~------------~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSS------------IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGT------------HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHH------------HHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            33456777777777777776542  22            46677888888888888775443333445567888888887


Q ss_pred             CCchh-------HHhhcCCCCCCEEEcCCCcc
Q 007082          447 LTDVS-------LHQLSSLSKLTNLSIRDAVL  471 (619)
Q Consensus       447 l~~~~-------~~~~~~l~~L~~L~L~~n~l  471 (619)
                      ++...       ...+..+|+|+.||  |..+
T Consensus       127 l~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         127 LSDTFRDQSTYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             TSSSSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred             cCcCcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence            76532       13356678888764  4444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.07  E-value=1.5e-05  Score=67.73  Aligned_cols=112  Identities=17%  Similarity=0.127  Sum_probs=81.0

Q ss_pred             hhCCCCCCEEeCCCCCCCChhhHhhhc----CCCCCcEEEccCCCCChhHHH----HhhcCCCCCEEEcCCCCCChhHH-
Q 007082          111 LTGMTCLKELDLSRCVKVTDAGMKHLL----SISTLEKLWLSETGLTADGIA----LLSSLQNLSVLDLGGLPVTDLVL-  181 (619)
Q Consensus       111 l~~~~~L~~L~L~~~~~l~~~~~~~l~----~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~L~~n~~~~~~~-  181 (619)
                      ..+.++|++|+|+++..+++.....++    ..++|++|++++|.++.....    .+...+.++.+++++|.+.+... 
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            347799999999986678877765544    689999999999999876543    45567899999999998876644 


Q ss_pred             ---HHhhcCCCCCEEEcc--CCccCchh----hHhhcCCCCCCEEecCCC
Q 007082          182 ---RSLQVLTKLEYLDLW--GSQVSNRG----AAVLKMFPRLSFLNLAWT  222 (619)
Q Consensus       182 ---~~~~~l~~L~~L~l~--~n~i~~~~----~~~~~~~~~L~~L~l~~n  222 (619)
                         ..+...++|+.++|.  +|.+.+..    ...+...++|+.|++..+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence               344667889887664  55665533    334556666666666544