Citrus Sinensis ID: 007094

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MGLAHELQMSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLK
cccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHcccHHcccccccccHHHHcccccHHHHHHHHHHHHHcccccEEcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEEEccccccHHHHHHHccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccEEEEcccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEcccccEEEEccccEEEcccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccc
cccccEccccccccccccccccccccccHHccccHHHHHHHHHHHHccHHHHHHHHHcHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccEEEEEEcccccccccccccEEccccccccHHHHHHHHccHHHccccccccHHHHcccccccEEEEEEccccEEEEEEEEEcccccccEEEEcccccEccccccccccccccccEEEEEEEEEEccccccccEEEEEEEcccccEEEEccccEccccHHHHHcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccc
mglahelqmswqpsllsekrkrggpplglrnlgnscylNSVLQcltytpplanfCLKLQHsslckqltgdsaldaerkrecpfcilEKRIVRSLsvdltldapaKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLrrkgggssggggggetinggsSVVKEIFGGALQSQVKCLacgaesnkvdEIMDISLDILNSCSLKEAMQKFfqpevldgnnkykcdncKKLVSARKQMSILQSPNILVIQLKRFegifggkidKAIAFEEVLVLSSFMckasqdpqpeyklfgtivhsgfspdsghYYAYIKDAIGrwyccndsyvSVSTLQEVLSEKVYILFFIRanqrpvsangtfasngvkshengkeaykgvkgtvplkavatkpsaeqssrktpstiskvekvpsnprlkfsisgssgckgvpptsngkvnvhksqsvkmngvvkdsvpkeksgkdpfintngsykskrvdlvgrgndlasvstsengdtqsvglnpvkpdphegnctssrttagrvpdpakllngsvkfdtdisgskrksQESCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKrqcahevgitpgdidlk
MGLAHELQMSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTgdsaldaerkreCPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLrrkgggssggggggetinGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFqpevldgnnkyKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTfasngvkshengkeaykgvkgtvplkavatkpsaeqssrktpstiskvekvpsnprlkfsisgssgckgvpptsngkvnvhksqsvkmngvvkdsvpkeksgkdpfintngsykskrvdLVGRGNDLAsvstsengdtqsvglnpvkpdpheGNCTssrttagrvpdpakllngsvkfdtdisgskrkSQESCILLAQDSESLAKLQELEEVLKKEassvlqscgwSEKVLSYMRSrkrqcahevgitpgdidlk
MGLAHELQMSWQPSLLSEkrkrggpplglrnlgnSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKgggssggggggetinggssVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILLAQDSESlaklqeleevlkkeASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLK
***************************GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLK************************VVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQR**********************************************************************************************************************************************************************************************************************************VLQSCGWSEKVLSYMR********************
****HELQMSWQP********RGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCL***********************GGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMC*A*QDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFF**************************************************************************************************************************************************************************************************************************************************VL************************
*********SWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLR***********GGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKA***********************VPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLAS*********QSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDT***********SCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLK
****HELQMSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDS****ERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLK*********************GSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN********************************************************************************************************************************************************************************************************SCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEV**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLAHELQMSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTFASNGVKSHENGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKDPFINTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILxxxxxxxxxxxxxxxxxxxxxASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q9FPS2661 Ubiquitin carboxyl-termin yes no 0.961 0.898 0.567 0.0
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.488 0.227 0.400 5e-70
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.487 0.227 0.405 6e-70
B2RQC2 1324 Ubiquitin carboxyl-termin yes no 0.488 0.228 0.400 9e-70
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.488 0.226 0.400 1e-69
B1AQJ2 1098 Ubiquitin carboxyl-termin no no 0.483 0.272 0.392 2e-67
Q9P275 1121 Ubiquitin carboxyl-termin no no 0.514 0.283 0.376 4e-67
C9J2P7530 Ubiquitin carboxyl-termin no no 0.480 0.560 0.350 8e-60
C9JPN9530 Ubiquitin carboxyl-termin no no 0.480 0.560 0.350 8e-60
D6R901530 Ubiquitin carboxyl-termin no no 0.480 0.560 0.350 1e-59
>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1 Back     alignment and function desciption
 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/647 (56%), Positives = 435/647 (67%), Gaps = 53/647 (8%)

Query: 3   LAHELQMSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSS 62
           +  +LQMSW PSLLS+KR R GPPLGLRNLGN+CYLNSVLQCLT+TPPLANFCL  +HSS
Sbjct: 1   MGFKLQMSWMPSLLSQKR-RNGPPLGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSS 59

Query: 63  LCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQ 122
            C     D+ +D ERKR+CPFCI+EKRI RSLSVDLT DAP KI SCL+IFAEHFK GRQ
Sbjct: 60  HC-----DTYVDGERKRDCPFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQ 114

Query: 123 EDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV 182
           EDAHEFLRYVIDACHNT LRLKKLR           G E  NG +SVVKEIFGGALQSQV
Sbjct: 115 EDAHEFLRYVIDACHNTSLRLKKLRY---------NGNEPFNG-NSVVKEIFGGALQSQV 164

Query: 183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARK 242
           KCL+CGAESNK DEIMDISL+IL S S+KE++QKFFQ E+LDGNNKY+C++C+KLV+ARK
Sbjct: 165 KCLSCGAESNKADEIMDISLEILQSSSVKESLQKFFQSEILDGNNKYRCESCEKLVTARK 224

Query: 243 QMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIV 302
           QMSILQ+PNILVIQLKRF GIFGGKIDKAI+F E+LVLS+FM KAS+DPQPEYKLFG IV
Sbjct: 225 QMSILQAPNILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIV 284

Query: 303 HSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANG 362
           HSGFSP+SGHYYAY+KD++GRWYCCNDS+VS+STLQEVLSEK YILFF R+NQRP SA  
Sbjct: 285 HSGFSPESGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPASAKT 344

Query: 363 TFASNGVKSHE-NGKEAYKGVKGTVPLKAVATKPSAEQSSRK------TPSTI------- 408
              SNG  SHE NG E     K   PL     KP AEQS +K       P          
Sbjct: 345 LVTSNGTTSHEVNGCETSNPQKFIGPLNGFNMKPQAEQSFQKGNLASSKPHKFIRPKPRA 404

Query: 409 -----------SKVEKVPSNPRLKFSISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKD 457
                      SKVEK P  P  K SIS + G K V P  NG+++ H+ +++      ++
Sbjct: 405 EQAPLEDNLLSSKVEKAPLRPHAKVSISVNLGAKRVSPV-NGRLSFHQDENIAPKANKEN 463

Query: 458 SV----PKEKSGKD-PFINTNGSYKSKRV-DLVGRGNDLASVSTSENGDTQSVGLNPVKP 511
           SV     K  SG +  F   NG    K      G  N   ++   E  +  S G +  K 
Sbjct: 464 SVSVLPTKVNSGTERKFGTENGGNGVKENGSAPGSSNHKVALHPHERSNGSSNGGDHHKD 523

Query: 512 DPHEGNCTSSRTTAGRVPDPAKLLNGSVKFDTDISGSKRKSQESCILLAQDSESLAKLQE 571
           + H   C S+ +  G    P    NG     +    S  K ++ CILL +D  S  +L+ 
Sbjct: 524 NLHP--CGSNGSQNG-TAHPETERNGVSTTQSKGLCSSTK-EDPCILLRKDESSRNELEA 579

Query: 572 LEEVLKKEASSVLQSCGWSEKVLSYMRSRKRQCAHEVGITPGDIDLK 618
           ++E LKK+A S L+SCGW +KVL  M ++KR    + G   G  DLK
Sbjct: 580 IKESLKKDALSHLRSCGWYDKVLISMHAKKRLRTEQSGGEDGS-DLK 625
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1 Back     alignment and function description
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3 Back     alignment and function description
>sp|C9J2P7|U17LF_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 15 OS=Homo sapiens GN=USP17L15 PE=3 SV=1 Back     alignment and function description
>sp|C9JPN9|UL17C_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 12 OS=Homo sapiens GN=USP17L12 PE=3 SV=1 Back     alignment and function description
>sp|D6R901|U17LL_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 21 OS=Homo sapiens GN=USP17L21 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
224114846657 predicted protein [Populus trichocarpa] 0.970 0.913 0.682 0.0
255577279644 cysteine-type endopeptidase, putative [R 0.975 0.936 0.667 0.0
224121556621 predicted protein [Populus trichocarpa] 0.943 0.938 0.654 0.0
356525831641 PREDICTED: ubiquitin carboxyl-terminal h 0.957 0.923 0.638 0.0
296086774635 unnamed protein product [Vitis vinifera] 0.946 0.921 0.645 0.0
225462100631 PREDICTED: ubiquitin carboxyl-terminal h 0.943 0.923 0.644 0.0
356556930652 PREDICTED: ubiquitin carboxyl-terminal h 0.953 0.903 0.652 0.0
449460062646 PREDICTED: ubiquitin carboxyl-terminal h 0.972 0.930 0.625 0.0
297834320662 ubiquitin-specific protease 25 [Arabidop 0.962 0.898 0.567 0.0
18400378661 ubiquitin carboxyl-terminal hydrolase 25 0.961 0.898 0.567 0.0
>gi|224114846|ref|XP_002316872.1| predicted protein [Populus trichocarpa] gi|222859937|gb|EEE97484.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/618 (68%), Positives = 490/618 (79%), Gaps = 18/618 (2%)

Query: 5   HELQMSWQPSLLSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLC 64
            +LQMSWQPSLLS+KRK  GPPLGL+NLGNSCYLNSVLQCLTYTPPLANFCL+LQHSSLC
Sbjct: 7   QKLQMSWQPSLLSQKRK-NGPPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLRLQHSSLC 65

Query: 65  KQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQED 124
                DS  + +RKR+CPFCILEKRIVRSLS+DLTLDAPAKIQSCL+IFAEHF+CGRQED
Sbjct: 66  -----DSVANGDRKRDCPFCILEKRIVRSLSLDLTLDAPAKIQSCLKIFAEHFRCGRQED 120

Query: 125 AHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKC 184
           AHEFLRYVIDACHNTCLRLKKLRRKG  +           GG SVVKEIFGGALQSQVKC
Sbjct: 121 AHEFLRYVIDACHNTCLRLKKLRRKGIEN--------GGGGGVSVVKEIFGGALQSQVKC 172

Query: 185 LACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQM 244
           L C  ESNKVDEIMDISLD+LNS S+++AMQKFFQPEVLDGNNKYKC+ C+KLV+ARKQM
Sbjct: 173 LCCNYESNKVDEIMDISLDVLNSYSVRDAMQKFFQPEVLDGNNKYKCEKCQKLVAARKQM 232

Query: 245 SILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHS 304
           SILQ+PN+LVIQLKRFEGIFG KIDKAIAFEEVLVLSSFM K SQDPQPEY LFGTIVHS
Sbjct: 233 SILQAPNVLVIQLKRFEGIFGAKIDKAIAFEEVLVLSSFMSKTSQDPQPEYNLFGTIVHS 292

Query: 305 GFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANGTF 364
           G+SP+SGHYYAYIKDA+GRWYCCNDSYV++STLQEVLSEKVY+LFF R NQRP SA  +F
Sbjct: 293 GYSPESGHYYAYIKDAMGRWYCCNDSYVTLSTLQEVLSEKVYVLFFSRTNQRPASAASSF 352

Query: 365 ASNGVKSHE-NGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEKVPSNPRLKFS 423
           AS GVKS E NG   +K  KG VPLKA+ TKP  EQSS+K  S +S++++VPS+P +K S
Sbjct: 353 ASYGVKSCESNGCVEFKSSKGAVPLKALPTKPQVEQSSKKDISAMSRIDRVPSSPPVKSS 412

Query: 424 ISGSSGCKGVPPTSNGKVNVHKSQSVKMNGVVKDSVPKEKSGKD--PFINTNGSYKSKRV 481
           I G+SG K  P + NGKV+  K Q+  MNG VK++V  EK  KD     ++NG  K K V
Sbjct: 413 ICGNSGSKSTPLSVNGKVDHLKGQNKGMNGNVKETVHVEKHDKDVSTVTSSNGFEKHKNV 472

Query: 482 DLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSSRTTAGRVPDPAKLLNGSVKF 541
           D V   N  A  + SENG +Q+   N VKP   + N T+S+ T GRV D  +L NGS+K 
Sbjct: 473 DAVEGENCHAFAAASENGHSQNAAFNSVKPLVCDSNGTTSKVTTGRVHDHLELQNGSMKC 532

Query: 542 DTDISGSKRKSQE-SCILLAQDSESLAKLQELEEVLKKEASSVLQSCGWSEKVLSYMRSR 600
             DISG KRK +E + ILLAQD++SLAK++E +E LK++AS +L SCG+ +KV  +MR+R
Sbjct: 533 CADISGLKRKLKEDTSILLAQDAQSLAKIEEFKEALKQQASLILGSCGFFDKVYDFMRAR 592

Query: 601 KRQCAHEVGITPGDIDLK 618
           KR C HE G  P   +LK
Sbjct: 593 KRLCVHEAGNKPSGTELK 610

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255577279|ref|XP_002529521.1| cysteine-type endopeptidase, putative [Ricinus communis] gi|223531005|gb|EEF32859.1| cysteine-type endopeptidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224121556|ref|XP_002330730.1| predicted protein [Populus trichocarpa] gi|222872506|gb|EEF09637.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525831|ref|XP_003531525.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Glycine max] Back     alignment and taxonomy information
>gi|296086774|emb|CBI32923.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462100|ref|XP_002271760.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556930|ref|XP_003546773.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Glycine max] Back     alignment and taxonomy information
>gi|449460062|ref|XP_004147765.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Cucumis sativus] gi|449519156|ref|XP_004166601.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834320|ref|XP_002885042.1| ubiquitin-specific protease 25 [Arabidopsis lyrata subsp. lyrata] gi|297330882|gb|EFH61301.1| ubiquitin-specific protease 25 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18400378|ref|NP_566486.1| ubiquitin carboxyl-terminal hydrolase 25 [Arabidopsis thaliana] gi|75262798|sp|Q9FPS2.1|UBP25_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 25; AltName: Full=Deubiquitinating enzyme 25; Short=AtUBP25; AltName: Full=Ubiquitin thioesterase 25; AltName: Full=Ubiquitin-specific-processing protease 25 gi|11993490|gb|AAG42763.1|AF302673_1 ubiquitin-specific protease 25 [Arabidopsis thaliana] gi|60543331|gb|AAX22263.1| At3g14400 [Arabidopsis thaliana] gi|332641992|gb|AEE75513.1| ubiquitin carboxyl-terminal hydrolase 25 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2090985661 UBP25 "ubiquitin-specific prot 0.812 0.759 0.567 6.1e-142
ZFIN|ZDB-GENE-030131-5739 1047 usp42 "ubiquitin specific pept 0.462 0.273 0.394 1.3e-56
UNIPROTKB|Q9H9J4 1324 USP42 "Ubiquitin carboxyl-term 0.729 0.340 0.306 1.5e-52
UNIPROTKB|C9JPC9 1044 USP42 "Ubiquitin carboxyl-term 0.724 0.429 0.305 4.4e-52
UNIPROTKB|E2RKV1 1117 USP36 "Ubiquitin carboxyl-term 0.540 0.299 0.343 8.9e-52
UNIPROTKB|E7EWZ4475 USP42 "Ubiquitin carboxyl-term 0.584 0.76 0.338 5.1e-51
ZFIN|ZDB-GENE-030131-5450 1104 usp36 "ubiquitin specific pept 0.640 0.358 0.313 8.1e-51
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.551 0.257 0.348 1.8e-50
UNIPROTKB|E1B9W9 1333 USP42 "Ubiquitin carboxyl-term 0.576 0.267 0.346 5.7e-50
MGI|MGI:1924050 1324 Usp42 "ubiquitin specific pept 0.584 0.272 0.346 7.5e-50
TAIR|locus:2090985 UBP25 "ubiquitin-specific protease 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
 Identities = 302/532 (56%), Positives = 359/532 (67%)

Query:     3 LAHELQMSWQPSLLSEXXXXXXXXXXXXXXXXSCYLNSVLQCLTYTPPLANFCLKLQHSS 62
             +  +LQMSW PSLLS+                +CYLNSVLQCLT+TPPLANFCL  +HSS
Sbjct:     1 MGFKLQMSWMPSLLSQKRRNGPPLGLRNLGN-TCYLNSVLQCLTFTPPLANFCLTHKHSS 59

Query:    63 LCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQ 122
              C     D+ +D ERKR+CPFCI+EKRI RSLSVDLT DAP KI SCL+IFAEHFK GRQ
Sbjct:    60 HC-----DTYVDGERKRDCPFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQ 114

Query:   123 EDAHEFLRYVIDACHNTCLRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQV 182
             EDAHEFLRYVIDACHNT LRLKKLR                     VVKEIFGGALQSQV
Sbjct:   115 EDAHEFLRYVIDACHNTSLRLKKLRYNGNEPFNGNS----------VVKEIFGGALQSQV 164

Query:   183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARK 242
             KCL+CGAESNK DEIMDISL+IL S S+KE++QKFFQ E+LDGNNKY+C++C+KLV+ARK
Sbjct:   165 KCLSCGAESNKADEIMDISLEILQSSSVKESLQKFFQSEILDGNNKYRCESCEKLVTARK 224

Query:   243 QMSILQSPNILVIQLKRFEGIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIV 302
             QMSILQ+PNILVIQLKRF GIFGGKIDKAI+F E+LVLS+FM KAS+DPQPEYKLFG IV
Sbjct:   225 QMSILQAPNILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIV 284

Query:   303 HSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVSANG 362
             HSGFSP+SGHYYAY+KD++GRWYCCNDS+VS+STLQEVLSEK YILFF R+NQRP SA  
Sbjct:   285 HSGFSPESGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPASAKT 344

Query:   363 TFASNGVKSHE-NGKEAYKGVKGTVPLKAVATKPSAEQSSRKTPSTISKVEK-VPSNPRL 420
                SNG  SHE NG E     K   PL     KP AEQS +K     SK  K +   PR 
Sbjct:   345 LVTSNGTTSHEVNGCETSNPQKFIGPLNGFNMKPQAEQSFQKGNLASSKPHKFIRPKPRA 404

Query:   421 KFS-ISG---SSGCKGVPPTSNGKVNVHKSQSVK----MNGVV---KDSVPKEKSGKDPF 469
             + + +     SS  +  P   + KV++  +   K    +NG +   +D     K+ K+  
Sbjct:   405 EQAPLEDNLLSSKVEKAPLRPHAKVSISVNLGAKRVSPVNGRLSFHQDENIAPKANKENS 464

Query:   470 INTNGSYKSKRVDLVGRGNDLASVSTSENGDTQSVGLNPVKPDPHEGNCTSS 521
             ++   +  +   +    G +       ENG       + V   PHE +  SS
Sbjct:   465 VSVLPTKVNSGTERKF-GTENGGNGVKENGSAPGSSNHKVALHPHERSNGSS 515
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
ZFIN|ZDB-GENE-030131-5739 usp42 "ubiquitin specific peptidase 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9J4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JPC9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKV1 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7EWZ4 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5450 usp36 "ubiquitin specific peptidase 36" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9W9 USP42 "Ubiquitin carboxyl-terminal hydrolase 42" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1924050 Usp42 "ubiquitin specific peptidase 42" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS2UBP25_ARATH3, ., 4, ., 1, 9, ., 1, 20.56720.96110.8986yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.963
3rd Layer3.4.19.120.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110848
hypothetical protein (657 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-153
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 6e-77
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-64
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 7e-58
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 1e-53
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 4e-53
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 6e-50
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 4e-45
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 3e-40
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-36
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 3e-35
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 3e-33
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 1e-32
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 1e-30
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 3e-20
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 5e-20
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 5e-19
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 2e-15
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 8e-15
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 2e-11
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 7e-11
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 3e-09
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 1e-07
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 4e-06
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 6e-06
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  441 bits (1137), Expect = e-153
 Identities = 152/326 (46%), Positives = 207/326 (63%), Gaps = 22/326 (6%)

Query: 26  PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCI 85
             GL+NLGN+C+LNSVLQCLT+TPPLAN+ L  +HS  C             +  C  C 
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC-----------NEGFCMMCA 49

Query: 86  LEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKK 145
           LE  + R+L+      AP    S L+  ++HF+ GRQEDAHEFLRY++DA    CL   K
Sbjct: 50  LEAHVERALASSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFK 109

Query: 146 LRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQVKCLACGAESNKVDEIMDISLDIL 205
                          +  +  +++V++IFGG L+SQVKCL C   SN  D  +D+SLDI 
Sbjct: 110 ----------KLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIK 159

Query: 206 NSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEGIFG 265
            + SL++A+++F +PE LDG NKYKC+ CKK V A KQ++I ++PN+L I LKRF    G
Sbjct: 160 GADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRG 219

Query: 266 GKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWY 325
           GKI+K I+F E L LS +M +   D   +YKL+  +VHSGFSP SGHYY Y+K + G+WY
Sbjct: 220 GKINKQISFPETLDLSPYMSQ-PNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWY 278

Query: 326 CCNDSYVSVSTLQEVLSEKVYILFFI 351
             +DS VS  +++ VLS+K YILF+I
Sbjct: 279 NMDDSKVSPVSIETVLSQKAYILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
KOG1865545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.98
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.95
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.95
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.89
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 99.77
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.43
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 96.97
KOG3556724 consensus Familial cylindromatosis protein [Genera 96.68
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 96.49
PF08715320 Viral_protease: Papain like viral protease; InterP 95.16
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 89.3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-66  Score=550.33  Aligned_cols=306  Identities=44%  Similarity=0.805  Sum_probs=285.8

Q ss_pred             CCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccC
Q 007094           23 GGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDA  102 (618)
Q Consensus        23 ~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~  102 (618)
                      .+.+.||.|+|||||+||+||||.++||+.+||+...+...|     .      +...|++|.++..+.+.+...+..+.
T Consensus       105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C-----~------~~~~C~lc~~q~hi~~A~~~~g~pis  173 (545)
T KOG1865|consen  105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSC-----H------RAKFCMLCTFQAHITRALHNPGHPIS  173 (545)
T ss_pred             ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhc-----c------ccCeeeehHHHHHHHHHhcCCCCccC
Confidence            477789999999999999999999999999999999998777     3      37889999999999999999988999


Q ss_pred             hHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEEEEE
Q 007094          103 PAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQSQV  182 (618)
Q Consensus       103 p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~~~i  182 (618)
                      |..|+..|+.+...|+.|.|+||||||+++++.|+..++.-.+             .........++|+++|+|.+++++
T Consensus       174 P~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~-------------~~~~~sq~ttlv~~iFGG~LrS~v  240 (545)
T KOG1865|consen  174 PSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHK-------------QVDPRSQDTTLVHQIFGGYLRSQI  240 (545)
T ss_pred             hHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCc-------------cCCcccccceehhhhhccchhhce
Confidence            9999999999999999999999999999999999999862221             111223567899999999999999


Q ss_pred             EeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEeeeee
Q 007094          183 KCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKRFEG  262 (618)
Q Consensus       183 ~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkRF~~  262 (618)
                      +|..|.+++.++|+.++|+|+|....+|++||+.|+..|.|+|+|+|.|++|+++..|.|+++|.++|.||+|+||||+.
T Consensus       241 kC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~  320 (545)
T KOG1865|consen  241 KCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN  320 (545)
T ss_pred             ecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcCCCceEEecCCceeecchhhhcc
Q 007094          263 IFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLS  342 (618)
Q Consensus       263 ~~~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~~~~W~~fNDs~Vt~v~~~ev~s  342 (618)
                      ...+||.+.|.||++|||.+||+.. .+...+|.|+|||+|.|.+..+|||+||||...|.||.+||+.|+.++.+.|++
T Consensus       321 ~~~gKI~K~I~fPE~LDl~PyMS~~-~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLs  399 (545)
T KOG1865|consen  321 GTGGKISKPVSFPETLDLQPYMSQP-NEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLS  399 (545)
T ss_pred             CcccccccccCCcccccccccccCC-CCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceec
Confidence            8889999999999999999999943 356789999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEc
Q 007094          343 EKVYILFFIRA  353 (618)
Q Consensus       343 ~~aYmLfY~R~  353 (618)
                      +.||||||.|.
T Consensus       400 q~AYmLfY~R~  410 (545)
T KOG1865|consen  400 QQAYILFYARK  410 (545)
T ss_pred             ccceEEEEEee
Confidence            99999999998

>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 4e-30
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 4e-30
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 4e-30
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-24
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 2e-24
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 3e-24
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 8e-24
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 2e-23
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 2e-21
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 5e-21
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 6e-21
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 9e-21
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 5e-20
2f1z_A522 Crystal Structure Of Hausp Length = 522 3e-13
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 3e-13
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 2e-12
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 3e-05
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 157/342 (45%), Gaps = 47/342 (13%)
Query: 35  SCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSL 94
           +C+++S+LQCL + P      +   HS+ CK  + D         +C  C L+K IV  L
Sbjct: 150 TCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPD---------KCFSCALDK-IVHEL 199
Query: 95  SVDLTLDAPAK-------------IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNT-C 140
              L     +              + +C     ++     Q+DAHEF +++I+  H +  
Sbjct: 200 YGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYV 259
Query: 141 LRLKKLRRKXXXXXXXXXXXXXXXXXXXVVKEIFGGALQSQVKCLACGAES-NKVDEIMD 199
           L L   +                     +V  +F G+L+S + C  C   S   +D  +D
Sbjct: 260 LDLPNAKE---------VSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLD 310
Query: 200 ISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKR 259
           +SLDI +   L E +  F + E L   N Y C  C     A KQ+ I + P++LV+QLKR
Sbjct: 311 LSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKR 369
Query: 260 FEGIFGG---KIDKAIAFEEVLVLSSFMCKASQDPQPE--------YKLFGTIVHSGFSP 308
           FE +  G   K+D  I F   L + ++     +D   E        Y+L G + H G + 
Sbjct: 370 FEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKG-TV 428
Query: 309 DSGHYYAYIKDAIGRWYCCNDSYVSVSTLQEVLSEKVYILFF 350
           + GHY A+ K + G+W+  NDS VS  + +EVL E+ Y+LF+
Sbjct: 429 NEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-113
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-111
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 1e-105
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-101
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 6e-93
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 4e-87
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-85
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 2e-75
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 4e-39
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 2e-14
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 8e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
 Score =  342 bits (879), Expect = e-113
 Identities = 102/355 (28%), Positives = 162/355 (45%), Gaps = 28/355 (7%)

Query: 16  LSEKRKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDA 75
           ++ K  +G    GLRNLGN+C++NS+LQCL+ T  L ++CL+  +       +       
Sbjct: 1   MNSKSAQG--LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALV 58

Query: 76  ERKRECPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDA 135
                  F  L + I  S   D+   +P++ ++ ++ +A  F    Q+DA EFLR+++D 
Sbjct: 59  -----EEFAKLIQTIWTSSPNDVV--SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDG 111

Query: 136 CHNTCLRLKKLRRKGGGSSGGGGGGETINGG--------SSVVKEIFGGALQSQVKCLAC 187
            HN   R+    +    +       E              S + ++F G L+S + C  C
Sbjct: 112 LHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDC 171

Query: 188 GAESNKVDEIMDISLDILNS----CSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQ 243
           G  S   D   D+SL I        +L + M+ F + +VLDG+ K  C  C+      K+
Sbjct: 172 GYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKK 231

Query: 244 MSILQSPNILVIQLKRFE--GIFGGKIDKAIAF-EEVLVLSSFMCKASQDPQPEYKLFGT 300
            SI + P ILV+ LKRF    I   K+   + F    L L  F  +        Y L+  
Sbjct: 232 FSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASE--NTNHAVYNLYAV 289

Query: 301 IVHSGFSPDSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLSEKVYILFFIRAN 354
             HSG +   GHY AY +    G W+  NDS V+  +  +V +   Y+LF+  A+
Sbjct: 290 SNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 343
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.94
3mp2_A211 Non-structural protein 3; papain-like protease, TG 97.1
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 95.82
3mhs_B96 Protein SUS1; multi-protein complex, hydrolase-tra 81.72
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.1e-61  Score=512.69  Aligned_cols=325  Identities=29%  Similarity=0.466  Sum_probs=269.0

Q ss_pred             CcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCCccChHH
Q 007094           26 PLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLTLDAPAK  105 (618)
Q Consensus        26 pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~p~~  105 (618)
                      ++||.|+||||||||+||+|+++|+||++|+...+....   ...   .+.....++.+++..++..++......+.|..
T Consensus         8 ~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~   81 (367)
T 2y6e_A            8 LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEI---NRD---NPLGMKGEIAEAYAELIKQMWSGRDAHVAPRM   81 (367)
T ss_dssp             CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGC---CSS---CTTSCTTHHHHHHHHHHHHHTSSSCSEECCHH
T ss_pred             CcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhc---ccc---CCCCcchHHHHHHHHHHHHHHcCCCCCcCHHH
Confidence            499999999999999999999999999999976543221   001   11122345778888899999888778999999


Q ss_pred             HHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCC---------cccCCCCccccccce
Q 007094          106 IQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGE---------TINGGSSVVKEIFGG  176 (618)
Q Consensus       106 ~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~I~~lF~g  176 (618)
                      |+.++....+.|..++||||+|||.+||+.|++++....+........ ..+..+.         ......++|.++|+|
T Consensus        82 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~-~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G  160 (367)
T 2y6e_A           82 FKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKD-ANGRPDAVVAKEAWENHRLRNDSVIVDTFHG  160 (367)
T ss_dssp             HHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCC-CCSCCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred             HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccccc-ccCCchhHHHHHHHHHHHHhcCCccccccCc
Confidence            999999999999999999999999999999999976543311110000 0000000         011245789999999


Q ss_pred             EEEEEEEeCCCCCeeeeeeeeEEEEEeecc-------------------cCCHHHHHHhcccccccCCCCcccCCccCcc
Q 007094          177 ALQSQVKCLACGAESNKVDEIMDISLDILN-------------------SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKL  237 (618)
Q Consensus       177 ~l~~~i~C~~C~~~s~~~E~f~~LsL~i~~-------------------~~sLed~L~~~~~~E~l~g~nky~C~~C~~~  237 (618)
                      .+.++++|..|++.+.+.|+|++|+|+|+.                   ..+|++||+.|+.+|.++++|+|.|++|+..
T Consensus       161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~  240 (367)
T 2y6e_A          161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKH  240 (367)
T ss_dssp             EEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEE
T ss_pred             EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCC
Confidence            999999999999999999999999999975                   2589999999999999999999999999999


Q ss_pred             ceeEEEEEEeeCCceEEEEEeeeeecc--CCccceeEeccc-hhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEE
Q 007094          238 VSARKQMSILQSPNILVIQLKRFEGIF--GGKIDKAIAFEE-VLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYY  314 (618)
Q Consensus       238 ~~a~k~~~i~~lP~iLiI~LkRF~~~~--~~K~~~~V~fP~-~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~  314 (618)
                      +.+.|+..|.++|+||+|||+||.++.  ..|+++.|.||. .|||.+|+.... .....|+|+|||+|.| +.++|||+
T Consensus       241 ~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G-~~~~GHY~  318 (367)
T 2y6e_A          241 QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS-ARPYVYDLIAVSNHYG-AMGVGHYT  318 (367)
T ss_dssp             ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS-SCCCEEEEEEEEEEEC-SSSSCEEE
T ss_pred             ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC-CCCceEEEEEEeecCC-CCCCCeee
Confidence            999999999999999999999999843  369999999996 799999987543 3467999999999999 58999999


Q ss_pred             EEEEcC-CCceEEecCCceeecchhhhccCCeEEEEEEEcCCCCCC
Q 007094          315 AYIKDA-IGRWYCCNDSYVSVSTLQEVLSEKVYILFFIRANQRPVS  359 (618)
Q Consensus       315 ayvr~~-~~~W~~fNDs~Vt~v~~~ev~s~~aYmLfY~R~~~~~~~  359 (618)
                      ||+|+. +++||+|||+.|+++++++|++..||||||+|.+..+..
T Consensus       319 a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~~  364 (367)
T 2y6e_A          319 AYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFYK  364 (367)
T ss_dssp             EEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC----
T ss_pred             EEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCCC
Confidence            999995 789999999999999999999999999999999876543
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 5e-65
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 9e-59
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-47
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-42
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 1e-36
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  215 bits (547), Expect = 5e-65
 Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 21/345 (6%)

Query: 22  RGGPPL-GLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRE 80
             GP L GLRNLGN+CY+NS+LQCL   P LA++  +  +     +    + L  + +  
Sbjct: 10  GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINR---SNLLGHKGEVA 66

Query: 81  CPFCILEKRIVRSLSVDLTLDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTC 140
             F I+ K +    +      +P   +  +    + F    Q+D+ E L +++D  H   
Sbjct: 67  EEFGIIMKAL---WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDL 123

Query: 141 LRLKKLRRKGGGSSGG--------GGGGETINGGSSVVKEIFGGALQSQVKCLACGAESN 192
            +    +R    ++              +      S++  +F G  +S V+CL C  +S 
Sbjct: 124 NKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSR 183

Query: 193 KVDEIMDISLDILN--SCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSP 250
             +  M +SL + +   C+L++ ++ F + E L  NN++ C +C+    + K++ I + P
Sbjct: 184 TFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLP 243

Query: 251 NILVIQLKRFE--GIFGGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSP 308
            +L++ LKRF   G +  K+  ++ F    +  S      ++   +Y LF    H G   
Sbjct: 244 PVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GL 302

Query: 309 DSGHYYAYIKDAI-GRWYCCNDSYVSVSTLQEVLSEKVYILFFIR 352
           D GHY AY K+A   RW+  +D  VS  ++  V S   YILF+  
Sbjct: 303 DGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-55  Score=461.68  Aligned_cols=297  Identities=27%  Similarity=0.430  Sum_probs=256.4

Q ss_pred             cCCCCCCcccccCCCcchHHHHHHHHhcChHHHHHHHhccccchhhcccCCCchhhhhccCchHHHHHHHHHHhhcCCCC
Q 007094           20 RKRGGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLKLQHSSLCKQLTGDSALDAERKRECPFCILEKRIVRSLSVDLT   99 (618)
Q Consensus        20 r~~~g~pvGL~N~GNTCYlNSvLQ~L~~ip~Fr~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   99 (618)
                      ||.+|. |||.|+||||||||+||+|+++|+||++++.......             ....++.+++..+|..+.... .
T Consensus         1 ~~~~G~-vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~-------------~~~~~~~~~l~~lf~~l~~~~-~   65 (347)
T d1nbfa_           1 KKHTGY-VGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGD-------------DSSKSVPLALQRVFYELQHSD-K   65 (347)
T ss_dssp             CCSSSC-CCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTC-------------CTTTCHHHHHHHHHHHHHHCS-S
T ss_pred             CCCCCC-cCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCC-------------cccchHHHHHHHHHHHHhcCC-C
Confidence            455676 9999999999999999999999999999987554321             134567888888888887665 5


Q ss_pred             ccChHHHHHHHHhhhcccCCCCcCcHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCCCCCcccCCCCccccccceEEE
Q 007094          100 LDAPAKIQSCLRIFAEHFKCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGGSSGGGGGGETINGGSSVVKEIFGGALQ  179 (618)
Q Consensus       100 ~i~p~~~~~~L~~l~~~f~~g~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~s~I~~lF~g~l~  179 (618)
                      .+.|..+...+.  .+.|..+.||||+||+..||+.|++++...                     ...+.|.++|.|.+.
T Consensus        66 ~~~~~~~~~~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~---------------------~~~~~i~~lF~g~~~  122 (347)
T d1nbfa_          66 PVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT---------------------CVEGTIPKLFRGKMV  122 (347)
T ss_dssp             CBCCHHHHHHTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS---------------------TTTTHHHHHHCEEEE
T ss_pred             CcChHHHHHhhc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhc---------------------cccccccceeceEEE
Confidence            678888877664  456888899999999999999999886421                     234789999999999


Q ss_pred             EEEEeCCCCCeeeeeeeeEEEEEeecccCCHHHHHHhcccccccCCCCcccCCccCccceeEEEEEEeeCCceEEEEEee
Q 007094          180 SQVKCLACGAESNKVDEIMDISLDILNSCSLKEAMQKFFQPEVLDGNNKYKCDNCKKLVSARKQMSILQSPNILVIQLKR  259 (618)
Q Consensus       180 ~~i~C~~C~~~s~~~E~f~~LsL~i~~~~sLed~L~~~~~~E~l~g~nky~C~~C~~~~~a~k~~~i~~lP~iLiI~LkR  259 (618)
                      +.++|..|+..+.+.++|+.|+|+++...+++++|..++..|.+++++++.|..| ....+.++..|.++|++|+|+|+|
T Consensus       123 ~~~~C~~C~~~s~~~e~f~~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~R  201 (347)
T d1nbfa_         123 SYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMR  201 (347)
T ss_dssp             EEEEESSSCCEEEEEEEESSEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEEC
T ss_pred             EeEEeCCccceeeeeccccccccccccccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeee
Confidence            9999999999999999999999999999999999999999999999887777766 567788999999999999999999


Q ss_pred             eeecc----CCccceeEeccchhhhccccccCCCCCCCceEEEEEEEeecCCCCCCcEEEEEEcC-CCceEEecCCceee
Q 007094          260 FEGIF----GGKIDKAIAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGFSPDSGHYYAYIKDA-IGRWYCCNDSYVSV  334 (618)
Q Consensus       260 F~~~~----~~K~~~~V~fP~~LdL~~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~ayvr~~-~~~W~~fNDs~Vt~  334 (618)
                      |.++.    ..|++..|.||+.|||.+|+..........|+|+|||+|.| +..+|||+||+|+. +++||+|||+.|++
T Consensus       202 f~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~~~~~~~~~W~~fnD~~V~~  280 (347)
T d1nbfa_         202 FMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSR  280 (347)
T ss_dssp             EEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEE-ETTEEEEEEEECTTSSSCCEEEETTEEEE
T ss_pred             eeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecC-CCCCCEEEEeeecCCCCEEEEEECCceEE
Confidence            99732    25999999999999999999887777788999999999999 57999999999984 67999999999999


Q ss_pred             cchhhhcc---------------CCeEEEEEEEcCCC
Q 007094          335 STLQEVLS---------------EKVYILFFIRANQR  356 (618)
Q Consensus       335 v~~~ev~s---------------~~aYmLfY~R~~~~  356 (618)
                      +++++|+.               .+||||||+|.+..
T Consensus       281 v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~~  317 (347)
T d1nbfa_         281 CTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL  317 (347)
T ss_dssp             CCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGGH
T ss_pred             CCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCch
Confidence            99999974               26999999998743
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure