Citrus Sinensis ID: 007097

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MVPRVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
cccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHEEEcEEEEEccccccccEEEcccccEEEEccccccccHHHHHHHHHcccccEEEEEEEcccEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHHHccc
ccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccEEEHHHHEHEccccccccccHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccHHHHccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccHHEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHHHHHHccc
mvprvlewgdgyyngdikTRKTMqameltpdkiglQRSKQLRELYESLLKGESelaykrpsaalspedltdaEWYYLVCMSFVfssgqglpgralansETIWLcnaqcadskVFSRSLLAKSASIQTVICFPHLDGVIElgvtelvpedpslLQHIKASLldfskpfcseksssppydedddsdplcakvSHEILDTVALeslyspgeenkfdgegvYELHGNineelhldsadecskgcehnhqteESFMVDGINGAASQVQSwhfvdddlsngipdsmhssdhkseslvnqaegfpsskdenmSHIQLKelqegnhtklslldlgivdgaHYRKTLSAIfgssnrltenpcflsvehkssfvswkkggmvkrhwpgIQQNLLKKILfsvplmhggcthrsqkeicrkycpvtmesdnfceehissdkrtenekFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCmysvdseprpkrnyTEMVEQtsdnydnkkldnhkkpwinkrkacdidetdpelnkfvpkdglaDVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTfrgaaiapaGIIEQALWKIAGKC
mvprvlewgdgyyngdiktrktmqameltpdkiglqrsKQLRELYESLLKGESelaykrpsaalspEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEhissdkrtenekFMVLRSMVPyisevdkasilsDTIKYLKKLEARVEELEScmysvdseprpkrnYTEMveqtsdnydnkkldnhkkpwinkrkacdidetdpelnkfvpkdgladVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
MVPRVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCseksssppydedddsdpLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
****VLEWGDGYYNGDIKT*************************************************LTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDF***************************SHEILDTVALESLY*******FDGEGVYELHGNINEEL*********************FMVDGINGAASQVQSWHFVD*************************************************TKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEH**********KFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMY**********************************WINKRKACDID****ELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIA***
MVPRVLEWGDGYYNGD*********************************************AALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKP****************************************************************************************************************************************************************************************************************************************************************************KFMVLRSMVPYISEVDKASILSDTIKYLKKLEA***************************************************************************SIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGA**APAGIIEQALWKIAGKC
MVPRVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPF*****************PLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDS****************GFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
MVPRVLEWGDGYYNGD*****************GLQRSKQLRELYESLLK**********SAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFC**********************************************************************************************************************************************************************RKT*SAIFGSSNRLTE*P************************PGIQQNLLKKILFSVPLMHG**************************E****DKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESC***********************************************************DGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
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MVPRVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSDPLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFVSWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEHISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q9FN69637 Transcription factor GLAB yes no 0.927 0.899 0.406 1e-116
Q9CAD0596 Transcription factor EGL1 no no 0.878 0.911 0.416 1e-114
P13526610 Anthocyanin regulatory Lc N/A no 0.309 0.313 0.505 2e-50
P13027612 Anthocyanin regulatory R- N/A no 0.263 0.266 0.553 5e-50
Q8W2F1526 Transcription factor MYC1 no no 0.286 0.336 0.517 9e-49
Q9FT81518 Transcription factor TT8 no no 0.273 0.326 0.540 7e-47
O49687589 Transcription factor MYC4 no no 0.229 0.241 0.341 5e-16
Q39204623 Transcription factor MYC2 no no 0.245 0.243 0.308 5e-15
Q9ZPY8566 Transcription factor ABA- no no 0.245 0.268 0.309 5e-14
Q9FIP9592 Transcription factor ATR2 no no 0.231 0.241 0.302 8e-14
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1 Back     alignment and function desciption
 Score =  418 bits (1074), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 259/637 (40%), Positives = 362/637 (56%), Gaps = 64/637 (10%)

Query: 5   VLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGES---------EL 55
           VLEWGDGYYNGDIKTRKT+QA E+  D++GL+RS+QL ELYESL   ES         ++
Sbjct: 42  VLEWGDGYYNGDIKTRKTIQASEIKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQV 101

Query: 56  AYKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFS 115
             +  +AALSPEDL D EWYYLVCMSFVF+ G+G+PGR  AN E IWLCNA  ADSKVFS
Sbjct: 102 TRRASAAALSPEDLADTEWYYLVCMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSKVFS 161

Query: 116 RSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSP 175
           RSLLAKSA+++TV+CFP L GV+E+G TE + ED +++Q +K S L+   P+ +   +  
Sbjct: 162 RSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITEDMNVIQCVKTSFLEAPDPYATILPARS 221

Query: 176 PYDEDDDSDP---LCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDS 232
            Y  D+  DP   L  ++   +  T    +       N FD E             H   
Sbjct: 222 DYHIDNVLDPQQILGDEIYAPMFSTEPFPTASPSRTTNGFDQE-------------HEQV 268

Query: 233 ADECSKGCEHNHQTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVN 292
           AD+            +SFM + I G ASQVQSW  +DD+LSN +  S++SSD  S++ V 
Sbjct: 269 ADD-----------HDSFMTERITGGASQVQSWQLMDDELSNCVHQSLNSSDCVSQTFVE 317

Query: 293 QAEGFPSSKDENMSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENP 352
            A G  +         +L ++QE      +L      D  HY+  +S IF ++++L   P
Sbjct: 318 GAAGRVAYGARKSRVQRLGQIQEQQRNVKTLSFDPRNDDVHYQSVISTIFKTNHQLILGP 377

Query: 353 CFLSVEHKSSFVSWKKGGMVKRHWPGI---QQNLLKKILFSVPLMHGGCTHRSQKEICRK 409
            F + + +SSF  WKK          +    Q +LKKI+F VP +H       QKE    
Sbjct: 378 QFRNCDKQSSFTRWKKSSSSSSGTATVTAPSQGMLKKIIFDVPRVH-------QKEKLML 430

Query: 410 YCPVTMESDNFCEEHISSDKRTE--NEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEA 467
             P     D      +   KR E  NE+FM LR ++P I+++DK SIL DTI+YL++LE 
Sbjct: 431 DSPEA--RDETGNHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELER 488

Query: 468 RVEELESCMYSVDSEPR-----PKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDID 522
           RV+ELESC  S D+E R      ++   +  E+TS N  N +  N KK  +N     ++ 
Sbjct: 489 RVQELESCRESTDTETRGTMTMKRKKPCDAGERTSANCANNETGNGKKVSVN-----NVG 543

Query: 523 ETDPELNKFVPKDGLAD-VKVSIQEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVS 581
           E +P    F    GL D +++     +V+IE+RC  RE +LL+IMD I++LHLD++SV S
Sbjct: 544 EAEPADTGFT---GLTDNLRIGSFGNEVVIELRCAWREGVLLEIMDVISDLHLDSHSVQS 600

Query: 582 SNLDGVLTLALKSTFRGAAIAPAGIIEQALWKIAGKC 618
           S  DG+L L +    +G+ IA  G+I++AL ++A  C
Sbjct: 601 STGDGLLCLTVNCKHKGSKIATPGMIKEALQRVAWIC 637
Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1 SV=1 Back     alignment and function description
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1 Back     alignment and function description
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1 Back     alignment and function description
>sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1 Back     alignment and function description
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
150416421656 MYC2 [Citrus sinensis] 0.993 0.935 0.995 0.0
150416419656 MYC2 [Citrus sinensis] 0.993 0.935 0.991 0.0
359489618659 PREDICTED: transcription factor GLABRA 3 0.993 0.931 0.658 0.0
225454234654 PREDICTED: transcription factor GLABRA 3 0.985 0.931 0.649 0.0
187936004654 myc anthocyanin regulatory protein [Viti 0.985 0.931 0.648 0.0
297745295639 unnamed protein product [Vitis vinifera] 0.961 0.929 0.641 0.0
224064031654 predicted protein [Populus trichocarpa] 0.987 0.932 0.635 0.0
82590377651 bHLH33 [Malus x domestica] 0.982 0.932 0.633 0.0
307563497648 bHLH protein [Pyrus pyrifolia] 0.977 0.932 0.631 0.0
224127668649 predicted protein [Populus trichocarpa] 0.977 0.930 0.616 0.0
>gi|150416421|gb|ABR68793.1| MYC2 [Citrus sinensis] Back     alignment and taxonomy information
 Score = 1266 bits (3276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/614 (99%), Positives = 611/614 (99%)

Query: 5   VLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAAL 64
           VLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAAL
Sbjct: 43  VLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAAL 102

Query: 65  SPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSAS 124
           SPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSAS
Sbjct: 103 SPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSAS 162

Query: 125 IQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSD 184
           IQTVIC PHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSD
Sbjct: 163 IQTVICSPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPFCSEKSSSPPYDEDDDSD 222

Query: 185 PLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNH 244
           PLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNH
Sbjct: 223 PLCAKVSHEILDTVALESLYSPGEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNH 282

Query: 245 QTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSDHKSESLVNQAEGFPSSKDEN 304
           QTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSS HKSESLVNQAEGFPSSKDEN
Sbjct: 283 QTEESFMVDGINGAASQVQSWHFVDDDLSNGIPDSMHSSGHKSESLVNQAEGFPSSKDEN 342

Query: 305 MSHIQLKELQEGNHTKLSLLDLGIVDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFV 364
           MSHIQLKELQEGNHTKLSLLDLGI DGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFV
Sbjct: 343 MSHIQLKELQEGNHTKLSLLDLGIDDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFV 402

Query: 365 SWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEH 424
           SWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEH
Sbjct: 403 SWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEH 462

Query: 425 ISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPR 484
           ISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPR
Sbjct: 463 ISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPR 522

Query: 485 PKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSI 544
           PKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSI
Sbjct: 523 PKRNYTEMVEQTSDNYDNKKLDNHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSI 582

Query: 545 QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPA 604
           QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPA
Sbjct: 583 QEMDVLIEMRCPSREYILLDIMDAINNLHLDAYSVVSSNLDGVLTLALKSTFRGAAIAPA 642

Query: 605 GIIEQALWKIAGKC 618
           GIIEQALWKIAGKC
Sbjct: 643 GIIEQALWKIAGKC 656

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|150416419|gb|ABR68792.1| MYC2 [Citrus sinensis] Back     alignment and taxonomy information
>gi|359489618|ref|XP_003633950.1| PREDICTED: transcription factor GLABRA 3 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225454234|ref|XP_002274163.1| PREDICTED: transcription factor GLABRA 3 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|187936004|gb|ABM92332.3| myc anthocyanin regulatory protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745295|emb|CBI40375.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224064031|ref|XP_002301357.1| predicted protein [Populus trichocarpa] gi|222843083|gb|EEE80630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|82590377|gb|ABB84474.1| bHLH33 [Malus x domestica] Back     alignment and taxonomy information
>gi|307563497|gb|ADN52335.1| bHLH protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|224127668|ref|XP_002320131.1| predicted protein [Populus trichocarpa] gi|222860904|gb|EEE98446.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2026629596 EGL3 "AT1G63650" [Arabidopsis 0.265 0.275 0.631 1.5e-110
TAIR|locus:504954829637 GL3 "AT5G41315" [Arabidopsis t 0.263 0.255 0.610 1.2e-108
TAIR|locus:2127023580 ATMYC1 [Arabidopsis thaliana ( 0.257 0.274 0.573 7.1e-90
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.260 0.310 0.555 3.2e-70
UNIPROTKB|Q948Y2451 Plw-OSB2 "R-type basic helix-l 0.270 0.370 0.562 2.9e-66
UNIPROTKB|Q7XPS7567 OSJNBa0065O17.4 "OSJNBa0065O17 0.260 0.283 0.508 3.8e-56
UNIPROTKB|Q53L62458 LOC_Os11g15210 "Helix-loop-hel 0.270 0.364 0.354 4.5e-26
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.233 0.244 0.333 2.1e-22
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.242 0.253 0.3 6.3e-22
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.231 0.204 0.356 2.1e-21
TAIR|locus:2026629 EGL3 "AT1G63650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 565 (203.9 bits), Expect = 1.5e-110, Sum P(3) = 1.5e-110
 Identities = 108/171 (63%), Positives = 136/171 (79%)

Query:     3 PRVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESL------LKGESELA 56
             P VLEWGDGYYNGDIKTRKT+QA E+  D++GL+RS+QLRELYESL        G S++ 
Sbjct:    39 PGVLEWGDGYYNGDIKTRKTIQAAEVKIDQLGLERSEQLRELYESLSLAESSASGSSQVT 98

Query:    57 YKRPSAALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSR 116
              +  +AALSPEDLTD EWYYLVCMSFVF+ G+G+PG AL+N E IWLCNA+ ADSKVF+R
Sbjct:    99 RRASAAALSPEDLTDTEWYYLVCMSFVFNIGEGIPGGALSNGEPIWLCNAETADSKVFTR 158

Query:   117 SLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASLLDFSKPF 167
             SLLAKSAS+QTV+CFP L GV+E+G TE + ED +++Q +K   L+ + P+
Sbjct:   159 SLLAKSASLQTVVCFPFLGGVLEIGTTEHIKEDMNVIQSVKTLFLE-APPY 208
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP
GO:0001708 "cell fate specification" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009913 "epidermal cell differentiation" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
TAIR|locus:504954829 GL3 "AT5G41315" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127023 ATMYC1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q948Y2 Plw-OSB2 "R-type basic helix-loop-helix protein" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XPS7 OSJNBa0065O17.4 "OSJNBa0065O17.4 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q53L62 LOC_Os11g15210 "Helix-loop-helix DNA-binding domain, putative" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN69GL3_ARATHNo assigned EC number0.40650.92710.8995yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MYCA1
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (628 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 3e-65
smart0035353 smart00353, HLH, helix loop helix domain 7e-07
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 1e-05
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 0.001
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  211 bits (539), Expect = 3e-65
 Identities = 85/157 (54%), Positives = 104/157 (66%), Gaps = 13/157 (8%)

Query: 3   PRVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSA 62
             VL WGDGYYNG+IKTRKT        +++GLQR K LRELY  L          R +A
Sbjct: 27  SGVLGWGDGYYNGEIKTRKT------VAEELGLQRKKVLRELYSLLSG-------SRDAA 73

Query: 63  ALSPEDLTDAEWYYLVCMSFVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKS 122
           ALSPEDLTD EW+YLV M+F F  G+GLPG+A A+   IWL  A   DS   SRS LA+S
Sbjct: 74  ALSPEDLTDTEWFYLVSMTFSFPPGEGLPGKAFASGSHIWLSGANELDSSNCSRSWLAQS 133

Query: 123 ASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKAS 159
           A IQT++C P   GV+ELG TE +PED +L+QH+K+ 
Sbjct: 134 AGIQTIVCIPVPGGVVELGSTEKIPEDLNLVQHVKSL 170

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 98.89
smart0035353 HLH helix loop helix domain. 98.88
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 98.79
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.04
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.94
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 97.88
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 97.81
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.64
KOG1318411 consensus Helix loop helix transcription factor EB 97.47
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.35
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.31
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.08
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 97.01
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 96.86
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.72
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 96.69
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 96.56
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 96.39
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 96.34
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 96.3
PRK0019490 hypothetical protein; Validated 96.26
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 96.22
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 96.17
PRK05007884 PII uridylyl-transferase; Provisional 96.13
KOG0561 373 consensus bHLH transcription factor [Transcription 96.07
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.04
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 96.03
KOG4304250 consensus Transcriptional repressors of the hairy/ 96.01
PRK00275895 glnD PII uridylyl-transferase; Provisional 95.64
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 95.49
PRK01759854 glnD PII uridylyl-transferase; Provisional 95.48
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 95.42
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 95.15
PRK05092931 PII uridylyl-transferase; Provisional 95.11
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 95.11
PRK04374869 PII uridylyl-transferase; Provisional 94.86
PRK03381 774 PII uridylyl-transferase; Provisional 94.84
KOG3960284 consensus Myogenic helix-loop-helix transcription 94.66
PRK04435147 hypothetical protein; Provisional 94.6
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.56
PRK03059856 PII uridylyl-transferase; Provisional 94.52
KOG4029228 consensus Transcription factor HAND2/Transcription 94.47
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.19
PRK03381774 PII uridylyl-transferase; Provisional 94.17
PLN0321793 transcription factor ATBS1; Provisional 94.11
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 94.04
PRK01759 854 glnD PII uridylyl-transferase; Provisional 93.85
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 93.58
PRK05007 884 PII uridylyl-transferase; Provisional 93.34
PRK03059 856 PII uridylyl-transferase; Provisional 93.14
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 93.08
PRK00275 895 glnD PII uridylyl-transferase; Provisional 93.0
cd0211660 ACT ACT domains are commonly involved in specifica 92.29
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 92.24
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 91.97
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 91.79
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 91.7
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 91.69
PRK08577136 hypothetical protein; Provisional 91.55
PRK05092 931 PII uridylyl-transferase; Provisional 91.49
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 91.35
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 91.14
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 90.18
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 89.99
PRK04374 869 PII uridylyl-transferase; Provisional 89.95
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 89.89
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 89.83
PRK07334403 threonine dehydratase; Provisional 89.35
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 88.4
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 88.04
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 86.9
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 85.79
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 85.59
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 85.17
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 84.31
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 82.51
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 82.1
COG383090 ACT domain-containing protein [Signal transduction 81.25
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 81.18
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 81.02
TIGR01817534 nifA Nif-specific regulatory protein. This model r 80.4
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 80.17
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=1.2e-43  Score=340.76  Aligned_cols=139  Identities=52%  Similarity=0.842  Sum_probs=127.4

Q ss_pred             CCceeeeCCccccCccccccccccccCCchhhhhHHHHHHHHHHHhhccCCcccccCCCCCCCCCCCCCCceeeEEEeee
Q 007097            2 VPRVLEWGDGYYNGDIKTRKTMQAMELTPDKIGLQRSKQLRELYESLLKGESELAYKRPSAALSPEDLTDAEWYYLVCMS   81 (618)
Q Consensus         2 q~g~L~WgdGyy~g~~k~rk~~~~~~~~~~~~~~~r~~~lreL~~sl~~g~~~~~~~~~~~~~~~e~~td~Ewfyl~sm~   81 (618)
                      ++.+|+||||||||++++++..   +  +  .+++|+++||+||.++.           .+++.+++|+|+||||++||+
T Consensus        25 ~~~~L~W~DG~~~g~~~~~~~~---~--~--~~~~~~~~l~~l~~~~~-----------~~~~~~~~v~~~e~f~~~s~~   86 (163)
T PF14215_consen   25 DNSVLVWGDGYCNGPKETRKNG---E--E--EQEQRSKVLRELHSSFS-----------SYALSPEEVTDTEWFYLVSMS   86 (163)
T ss_pred             CCCeeeEcceeecCCcccccch---h--h--ccchhhhHHHHHhhhcc-----------ccccccchhHHHHHHhhceee
Confidence            3469999999999999888765   1  2  34899999999995444           235679999999999999999


Q ss_pred             eeecCCCCccceeeeCCCcEEEeCCCCCCCchhhhHHHhhhcCCcEEEEeeeCCceeEeeccccccCChhHHHHHHHHh
Q 007097           82 FVFSSGQGLPGRALANSETIWLCNAQCADSKVFSRSLLAKSASIQTVICFPHLDGVIELGVTELVPEDPSLLQHIKASL  160 (618)
Q Consensus        82 ~~F~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~~a~~agIQTvvciP~~~GVvELGSte~v~Ed~~lv~~ik~~F  160 (618)
                      |+|  |+|+|||||++|+|+||++++.++.+.|+|+++||++|||||||||+++||||||||++|+||++||++||++|
T Consensus        87 ~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~~GVvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen   87 YSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVPNGVVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             EEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEecCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence            999  99999999999999999999999999999999999999999999999999999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 2e-07
1hlo_A80 Protein (transcription factor MAX); transcriptiona 2e-05
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 5e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-04
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.9 bits (157), Expect = 6e-11
 Identities = 87/674 (12%), Positives = 182/674 (27%), Gaps = 223/674 (33%)

Query: 10  DGYYNGDIKTRKTMQAMELTPDKIGLQRSK--QLRELYESLLKGESELAYKRPSAALSPE 67
           D     D+  +  +   E+  D I + +        L+ +LL  + E+  K     L   
Sbjct: 34  DCKDVQDM-PKSILSKEEI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI- 89

Query: 68  DLTDAEW-----------------YYLVCMSFVFSSGQGLPGRALANSETI-----WLCN 105
              + ++                  Y+     +++  Q      ++  +        L  
Sbjct: 90  ---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 106 AQCADSKV------FSRSLLAKSA--SIQTVICFPHLDGV--IELGVTELVPEDPSLLQH 155
            + A + +        ++ +A     S +          +  + L          ++L+ 
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNCN---SPETVLEM 201

Query: 156 IKASLLDFSKPFCS--EKSSSPPYDEDDDSDPLCAKVSHE-------ILDTVALESLYSP 206
           ++  L      + S  + SS+           L   +  +       +L  V      + 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNA 256

Query: 207 GEENKFDGEGVYELHGNINEELHLDSADECSKGCEHNHQ----TEESFMVDGINGAASQV 262
              N F+                          C    +    T    + D ++ A +  
Sbjct: 257 KAWNAFNL------------------------SC----KILLTTRFKQVTDFLSAATTT- 287

Query: 263 QSWHFVDDDLSNGI-PD---SMHSS--DHKSESLVNQA-EGFP--------SSKD----- 302
              H   D  S  + PD   S+     D + + L  +     P        S +D     
Sbjct: 288 ---HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 303 ENMSHIQLKELQEGNHTKLSLL----------DLGI-VDGAHY-RKTLSAIFGSSNRLTE 350
           +N  H+   +L     + L++L           L +    AH     LS I+    + ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-SD 403

Query: 351 NPCFLSVEHKSSFV-SWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRS---QKEI 406
               ++  HK S V    K   +      I   L  K+     L      HRS      I
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYAL------HRSIVDHYNI 455

Query: 407 CRKYCP---VTMESDN-FCEE---HISSDKRTE----------NEKFM---VLRSMVPYI 446
            + +     +    D  F      H+ + +  E          + +F+   +      + 
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 447 SEVDKASILSDTIKYLKKLEARVEELESCMYSVDSEPRPKRNYTEMVEQTSDNYDNKKLD 506
           +     + L     Y               Y  D++P+    Y  +V             
Sbjct: 516 ASGSILNTLQQLKFYKP-------------YICDNDPK----YERLVN------------ 546

Query: 507 NHKKPWINKRKACDIDETDPELNKFVPKDGLADVKVSIQEMDVLIEMRCPSREYILLDIM 566
                                +  F+PK             + LI       + + + +M
Sbjct: 547 --------------------AILDFLPKIE-----------ENLI--CSKYTDLLRIALM 573

Query: 567 DAINNLHLDAYSVV 580
                +  +A+  V
Sbjct: 574 AEDEAIFEEAHKQV 587
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.31
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.16
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.14
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.13
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.1
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.08
4ati_A118 MITF, microphthalmia-associated transcription fact 99.05
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.01
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 98.97
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 98.96
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 98.82
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.42
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.35
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.2
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.0
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 97.77
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 97.06
4ath_A83 MITF, microphthalmia-associated transcription fact 96.89
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 96.65
1u8s_A 192 Glycine cleavage system transcriptional repressor, 95.66
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 95.13
2nyi_A 195 Unknown protein; protein structure initiative, PSI 95.0
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 94.88
2nyi_A195 Unknown protein; protein structure initiative, PSI 94.83
1u8s_A192 Glycine cleavage system transcriptional repressor, 94.28
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 93.78
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 93.46
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 92.91
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 92.85
1vhm_A195 Protein YEBR; structural genomics, unknown functio 92.76
3hcy_A151 Putative two-component sensor histidine kinase PR; 92.55
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 92.14
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 91.33
2jhe_A 190 Transcription regulator TYRR; aromatic hydrocarbon 91.31
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 90.51
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 90.47
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 90.38
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 90.28
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 89.84
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 89.79
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 89.78
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 89.73
2qyb_A181 Membrane protein, putative; GAF domain, domain of 89.68
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 88.91
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 87.69
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 87.66
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 87.56
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 85.58
1y7p_A 223 Hypothetical protein AF1403; structural genomics, 84.39
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 83.51
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 82.57
2pc6_A165 Probable acetolactate synthase isozyme III (small; 82.52
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 80.59
3p01_A184 Two-component response regulator; PSI-2, midwest c 80.11
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.31  E-value=6.3e-13  Score=113.23  Aligned_cols=60  Identities=23%  Similarity=0.396  Sum_probs=55.8

Q ss_pred             ccchhhHHHHhH---HHhHHHhHhcCCCC-CCccccchHHHHHHHHHHHHHHHHHHHhccccCC
Q 007097          421 CEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSVD  480 (618)
Q Consensus       421 ~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l~  480 (618)
                      ..+|+.+||+||   |+.|..|++|||.. .|+||++||.+||+||+.|+.+++.|+.++..+.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999   99999999999987 8999999999999999999999999999886554
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 618
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 4e-10
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 2e-06
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 4e-06
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 8e-06
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 1e-05
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 3e-05
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 1e-04
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 4e-04
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 433 NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELES 474
           N+K + L+ +V    +++ K+ +L   I Y+K L+    +L  
Sbjct: 5   NDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.11
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.08
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.05
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.02
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.0
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.0
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 98.97
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 98.86
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 97.15
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.43
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 95.76
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 94.14
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 93.32
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 92.72
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 90.64
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 88.4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.7e-11  Score=101.72  Aligned_cols=59  Identities=24%  Similarity=0.405  Sum_probs=53.9

Q ss_pred             ccchhhHHHHhH---HHhHHHhHhcCCCC-CCccccchHHHHHHHHHHHHHHHHHHHhccccC
Q 007097          421 CEEHISSDKRTE---NEKFMVLRSMVPYI-SEVDKASILSDTIKYLKKLEARVEELESCMYSV  479 (618)
Q Consensus       421 ~~~h~~~ER~RR---n~~f~~LrslvP~~-~k~dKaSIL~daI~Yik~L~~~v~~Le~~~~~l  479 (618)
                      ...|+.+||+||   |+.|..|++|||.. .|++|++||..||+||+.|+.+++.|..+...+
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l   69 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999   99999999999975 688999999999999999999999999877644
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure