Citrus Sinensis ID: 007100

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGVS
ccccccccEEEEEEccccEEEEEcccccccccccccccccccccEEEcccEEEEEEccEEEEEccccccEEEEccccEEEccccccEEEEccccEEEEEcccHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccc
ccccccccEEEEEEcccEEEEEEcccccEEEEccccccccccEEEEccccEEEEEEccEEEEEcccccEEEEEccccEEEEEccccEEEEccccEEEEEEccHHHHHHEccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHcccHHHHcHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccc
mavspngnfvacfthdgrlvvnntnfsspvidescesalppeqiawcgmdSVLLYWNDMLVMvapqaepvqyfydeplvlipecdgvrilsnSSMEflqrvpasteQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLnaardpeigiplSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKitaslaipdVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEheprsskqvpLLLSIGEEDTALVKatesgdtdLVYLVIFHIWqkrpaleffgmiqtrplacDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWelgknpmasngsalhgpriKRIEKAHSLFSetkehtfeSKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERfskekrppigyrpfveACVDADEKGealkyipklvdprERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDrlsfqgvs
mavspngnfvacFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEheprsskqvplLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPmasngsalhgprIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQaifvdssisdtIRTCIVLgnhraamkvktefkvsekrWYWLKVFALATKRDWDALERfskekrppigyrpfVEACVDADEKGEalkyipklvdpreRAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDrlsfqgvs
MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTlleilldklklckGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMakeaadaasqakdGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGVS
*******NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDI************************IQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHA************************LLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELG*******************************************KLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVD******AYARI*****************LLGRLKLTFAQNAAASSIFDTL**********
MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKIT******D**LLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWEL*************GPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVS*****FVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLK**************TLRDRLSFQ***
MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIG***********AKDGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGVS
**VSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSF****
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MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAAASSIFDTLRDRLSFQGVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query618 2.2.26 [Sep-21-2011]
Q55C58832 Vacuolar protein sorting- yes no 0.923 0.686 0.402 1e-120
Q920Q4839 Vacuolar protein sorting- yes no 0.962 0.709 0.372 1e-102
Q9H269839 Vacuolar protein sorting- yes no 0.923 0.680 0.379 6e-99
Q5E9L7839 Vacuolar protein sorting- yes no 0.923 0.680 0.378 1e-98
Q9UT38835 Probable vacuolar protein yes no 0.933 0.691 0.320 7e-84
Q03308798 Vacuolar protein sorting- yes no 0.841 0.651 0.268 4e-39
Q11182852 Vacuolar protein sorting- yes no 0.906 0.657 0.241 1e-25
Q60V75858 Vacuolar protein sorting- N/A no 0.723 0.520 0.260 3e-24
>sp|Q55C58|VPS16_DICDI Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2 Back     alignment and function desciption
 Score =  433 bits (1114), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/604 (40%), Positives = 362/604 (59%), Gaps = 33/604 (5%)

Query: 1   MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDML 60
           M VSP G  +ACF   G L++  T+ S+   D     A     + WCG D V++YW+ + 
Sbjct: 223 MVVSPCGKKLACFDTKGTLLILKTDGSTTNPDRMDTKATKSPVLKWCGSDGVMMYWDSI- 281

Query: 61  VMVAPQAEPVQYFY-----------DEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIF 109
                  +P+ +++           D+P+ L+ E DG+RI+S+++ EF  +V   T  IF
Sbjct: 282 ------KDPILFYFSKGDSWAKFTLDQPVSLVTEIDGLRIISDTTSEFFHKVSDVTIDIF 335

Query: 110 AIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLL 169
            IG+TSPA++LYDA DHF  +S +ADE++R I   L  AV  CI AAG EF+   Q  LL
Sbjct: 336 KIGTTSPASILYDATDHFISKSPQADESIRSINDQLEDAVNDCILAAGFEFNGGEQSKLL 395

Query: 170 RAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINA 229
           +AAS+G+ F  N+   +   MC++LRVLNA R  EIGIPLSI+QY  +    LI RLI+ 
Sbjct: 396 KAASFGKCFLENYNPSQFVTMCRSLRVLNAVRHHEIGIPLSIKQYYHIGIEELIDRLISR 455

Query: 230 NCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVA 289
             HLLA RI +YL +  +VV+ HWAC+K+     IPD  L +I++ KL+   GIS+A +A
Sbjct: 456 RKHLLAWRICDYLKIKSDVVLNHWACTKVRTD--IPDQELGKIIIKKLESVPGISFANIA 513

Query: 290 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQ 349
           + A  +GR KLA  L+E+EP++++QVP L+ +GE   AL KA ESGDTDLVYLV+  + +
Sbjct: 514 SAAYLAGRSKLATKLLEYEPKAAEQVPPLIKMGESGLALNKAIESGDTDLVYLVLLAMQR 573

Query: 350 KRPALEFFGMIQTRPLACDLFTVYARCYKHEF--LKDFFLSTGQLQEVAFLLWKESWELG 407
             P  +F  +  ++ +A DL     +  K++F  L++ +    Q +E+  +  +E+    
Sbjct: 574 SLPLADFLELTFSKVVALDLLISMCK-QKNDFPLLREIYHIKDQSKEMGNIYLQEA---- 628

Query: 408 KNPMASNGSALHGPRIKRIEKA--HSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQ 465
              ++S+ S L   RIK   K+  H   S+ K+    SK  ++  KL  +Q ELE + + 
Sbjct: 629 ---LSSHPSQLDQ-RIKAYNKSIEHYHHSKDKDDQATSKFIDDQIKLEMLQKELETNLQD 684

Query: 466 AIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSK 525
             FV  SI+DTI   I +   + A  +++EFKV +KR++W+K+ AL+   DW+ L +FSK
Sbjct: 685 ESFVGISINDTIYKLITMNQPKKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSK 744

Query: 526 EKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDG 585
           EK+ PIGY PFVE C+D   + EALKYIPK+ D   + + Y +IG  +EAAD A + K+ 
Sbjct: 745 EKKSPIGYEPFVEVCLDQKNQIEALKYIPKITDILPKIQFYIQIGYFREAADIAFKEKNF 804

Query: 586 ELLG 589
           +LL 
Sbjct: 805 DLLN 808
May play a role in vesicle-mediated protein trafficking to endosomal/lysosomal compartments and in membrane docking/fusion reactions.
Dictyostelium discoideum (taxid: 44689)
>sp|Q920Q4|VPS16_MOUSE Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=3 Back     alignment and function description
>sp|Q9H269|VPS16_HUMAN Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2 Back     alignment and function description
>sp|Q5E9L7|VPS16_BOVIN Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1 Back     alignment and function description
>sp|Q9UT38|VPS16_SCHPO Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps16 PE=3 SV=1 Back     alignment and function description
>sp|Q03308|VPS16_YEAST Vacuolar protein sorting-associated protein 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS16 PE=1 SV=2 Back     alignment and function description
>sp|Q11182|VPS16_CAEEL Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis elegans GN=vps-16 PE=3 SV=2 Back     alignment and function description
>sp|Q60V75|VPS16_CAEBR Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
225446811 838 PREDICTED: vacuolar protein sorting-asso 0.991 0.731 0.876 0.0
356526977 843 PREDICTED: vacuolar protein sorting-asso 0.996 0.730 0.862 0.0
356567439 843 PREDICTED: vacuolar protein sorting-asso 0.996 0.730 0.860 0.0
224082574 844 predicted protein [Populus trichocarpa] 0.998 0.731 0.857 0.0
255571398 851 vacuolar protein sorting vps16, putative 0.996 0.723 0.867 0.0
449453776 844 PREDICTED: vacuolar protein sorting-asso 1.0 0.732 0.844 0.0
357459003 856 Vacuolar protein sorting-associated prot 1.0 0.721 0.844 0.0
224066557 844 predicted protein [Populus trichocarpa] 0.998 0.731 0.839 0.0
18404619 858 vacuoleless1 (VCL1) [Arabidopsis thalian 0.990 0.713 0.804 0.0
297827353 858 hypothetical protein ARALYDRAFT_321506 [ 0.990 0.713 0.804 0.0
>gi|225446811|ref|XP_002283428.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Vitis vinifera] gi|302143532|emb|CBI22093.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/613 (87%), Positives = 570/613 (92%)

Query: 1   MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDML 60
           M VS NG  +A FTHDGRL+V +T+FS  + + SCESALPP+Q++WCGMDSVLLYW+DML
Sbjct: 224 MVVSRNGKLLASFTHDGRLLVISTDFSKIIFEYSCESALPPDQLSWCGMDSVLLYWDDML 283

Query: 61  VMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALL 120
           +MV P  +PV+Y YDEP++LIPECDGVRILSN+SMEFLQRVP ST  IF IGST PAALL
Sbjct: 284 LMVGPYGDPVRYLYDEPIILIPECDGVRILSNTSMEFLQRVPDSTVSIFKIGSTLPAALL 343

Query: 121 YDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCS 180
           YDALDHFDRRSAKADENLRLIR+SLP+AVEACIDAAGHEFD+SRQRTLLRAASYGQAFCS
Sbjct: 344 YDALDHFDRRSAKADENLRLIRSSLPEAVEACIDAAGHEFDVSRQRTLLRAASYGQAFCS 403

Query: 181 NFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISE 240
           + QRDR Q MCKTLRVLNA  + EIGIPLSIQQYK LTA VLIGRLIN + HLLALRISE
Sbjct: 404 HVQRDRFQVMCKTLRVLNAVHNSEIGIPLSIQQYKLLTAPVLIGRLINMHQHLLALRISE 463

Query: 241 YLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKL 300
           YLGMNQEVVIMHWACSKITASLAIPD TLLEILLDKL+LCKGIS+AAVAAHADK+GRRKL
Sbjct: 464 YLGMNQEVVIMHWACSKITASLAIPDATLLEILLDKLRLCKGISFAAVAAHADKNGRRKL 523

Query: 301 AAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMI 360
           AAMLVEHE RSSKQVPLLLSIGEEDTAL KATESGDTDLVYLV+FHIWQKRPALE+FGMI
Sbjct: 524 AAMLVEHESRSSKQVPLLLSIGEEDTALTKATESGDTDLVYLVLFHIWQKRPALEYFGMI 583

Query: 361 QTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHG 420
           Q RPLA DLF  YARCYKHEFLKDFFLSTGQLQ+VAFLLWKESWELGKNPMAS GS LHG
Sbjct: 584 QARPLARDLFITYARCYKHEFLKDFFLSTGQLQDVAFLLWKESWELGKNPMASKGSPLHG 643

Query: 421 PRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTC 480
           PRIK IEKA SLFSETKEHTFESKAAEEHAKL+RIQHELEV+TKQAIFVDSSISDTIRTC
Sbjct: 644 PRIKIIEKAQSLFSETKEHTFESKAAEEHAKLIRIQHELEVTTKQAIFVDSSISDTIRTC 703

Query: 481 IVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEAC 540
           IVLGNHRAAMKVKTEFKVSEKRWYWLKVFALAT RDWDALE+FSKEKRPPIGYRPFVEAC
Sbjct: 704 IVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATIRDWDALEKFSKEKRPPIGYRPFVEAC 763

Query: 541 VDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAA 600
           +DADEKGEALKYIPKL DPRERAE+YARIGMAKEAADAASQAKDGELLGRLKLTFAQNAA
Sbjct: 764 IDADEKGEALKYIPKLTDPRERAESYARIGMAKEAADAASQAKDGELLGRLKLTFAQNAA 823

Query: 601 ASSIFDTLRDRLS 613
           ASSIFDTLRDRL 
Sbjct: 824 ASSIFDTLRDRLG 836

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356526977|ref|XP_003532091.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356567439|ref|XP_003551927.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Glycine max] Back     alignment and taxonomy information
>gi|224082574|ref|XP_002306748.1| predicted protein [Populus trichocarpa] gi|222856197|gb|EEE93744.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571398|ref|XP_002526647.1| vacuolar protein sorting vps16, putative [Ricinus communis] gi|223534014|gb|EEF35735.1| vacuolar protein sorting vps16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449453776|ref|XP_004144632.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Cucumis sativus] gi|449519144|ref|XP_004166595.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|357459003|ref|XP_003599782.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355488830|gb|AES70033.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224066557|ref|XP_002302135.1| predicted protein [Populus trichocarpa] gi|222843861|gb|EEE81408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18404619|ref|NP_565879.1| vacuoleless1 (VCL1) [Arabidopsis thaliana] gi|13877133|gb|AAK43713.1|AF359240_1 VCL1 [Arabidopsis thaliana] gi|15081711|gb|AAK82510.1| At2g38020/T8P21.7 [Arabidopsis thaliana] gi|22655028|gb|AAM98105.1| At2g38020/T8P21.7 [Arabidopsis thaliana] gi|330254385|gb|AEC09479.1| vacuoleless1 (VCL1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827353|ref|XP_002881559.1| hypothetical protein ARALYDRAFT_321506 [Arabidopsis lyrata subsp. lyrata] gi|297327398|gb|EFH57818.1| hypothetical protein ARALYDRAFT_321506 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query618
TAIR|locus:2065674858 VCL1 "AT2G38020" [Arabidopsis 0.990 0.713 0.768 3.2e-254
DICTYBASE|DDB_G0270754832 vps16 "Vacuolar protein sortin 0.904 0.671 0.399 3.2e-104
UNIPROTKB|Q9H269839 VPS16 "Vacuolar protein sortin 0.901 0.663 0.383 5.3e-100
MGI|MGI:2136772839 Vps16 "vacuolar protein sortin 0.901 0.663 0.383 7.6e-99
UNIPROTKB|G4N5E9829 MGG_05256 "Vacuolar protein so 0.906 0.675 0.376 2.2e-98
RGD|1359414839 Vps16 "vacuolar protein sortin 0.901 0.663 0.378 2.6e-98
ZFIN|ZDB-GENE-050809-9835 zgc:162584 "zgc:162584" [Danio 0.899 0.665 0.378 5.8e-98
UNIPROTKB|F1MQ47839 VPS16 "Vacuolar protein sortin 0.901 0.663 0.382 9.4e-98
UNIPROTKB|Q5E9L7839 VPS16 "Vacuolar protein sortin 0.901 0.663 0.382 9.4e-98
UNIPROTKB|E2QZL5839 VPS16 "Uncharacterized protein 0.901 0.663 0.383 2.5e-97
TAIR|locus:2065674 VCL1 "AT2G38020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2431 (860.8 bits), Expect = 3.2e-254, Sum P(2) = 3.2e-254
 Identities = 476/619 (76%), Positives = 520/619 (84%)

Query:     1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDML 60
             M VSPNG F+  FTHDGR+VV +       ID SCESALPP+Q+AWCGMDSVLLYW++ L
Sbjct:   246 MIVSPNGKFLTLFTHDGRIVVVDMETKQIAIDYSCESALPPQQMAWCGMDSVLLYWDEDL 305

Query:    61 VMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALL 120
             +MV P  +PV YFYDEP++LIPECDGVRILSN+++EFLQRVP STE IF IGSTSPAALL
Sbjct:   306 MMVGPVGDPVHYFYDEPIILIPECDGVRILSNTNLEFLQRVPDSTESIFKIGSTSPAALL 365

Query:   121 YDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCS 180
             YDALDHFDRRSAKADENLRLIR+SL +AVE+CIDAAGHEFD++RQR LLRAASYGQAFCS
Sbjct:   366 YDALDHFDRRSAKADENLRLIRSSLSEAVESCIDAAGHEFDVTRQRALLRAASYGQAFCS 425

Query:   181 NFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISE 240
             NFQR+R+QE C+TLRVLNA RDP IGIPLSIQQYK LT  VLI RLINANCHLLALRISE
Sbjct:   426 NFQRERVQETCRTLRVLNAVRDPAIGIPLSIQQYKLLTPVVLISRLINANCHLLALRISE 485

Query:   241 YLGMNQEVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRRKL 300
             YL MN+EVVIMHWAC+KITAS + PD               GISYAAVA HAD  GRRKL
Sbjct:   486 YLDMNKEVVIMHWACAKITASPSTPDSHLLEILLDKLQLCKGISYAAVATHADNCGRRKL 545

Query:   301 AAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMI 360
             AAMLVEHEPRS+KQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRP LEFF MI
Sbjct:   546 AAMLVEHEPRSTKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPPLEFFAMI 605

Query:   361 QTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHG 420
             Q R LA DLF  YARC+KHEFLKDFFLSTGQ+ EVAFLLWKESW++GKNPMAS GS LHG
Sbjct:   606 QGRVLARDLFVAYARCHKHEFLKDFFLSTGQIHEVAFLLWKESWDMGKNPMASKGSPLHG 665

Query:   421 PRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTC 480
             PRIK IEKA +LFS+TKEHTFESKAAEEHAKLL+IQHELE STKQAIFVDSSI+DTIRTC
Sbjct:   666 PRIKLIEKARNLFSQTKEHTFESKAAEEHAKLLKIQHELEASTKQAIFVDSSINDTIRTC 725

Query:   481 IVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEAC 540
             IVLGN+RAA+KVKTEFKVS+KRWYWLK FALAT +DW ALE+FSKEKRPP+G+RPFVEAC
Sbjct:   726 IVLGNNRAAIKVKTEFKVSDKRWYWLKAFALATIKDWAALEKFSKEKRPPMGFRPFVEAC 785

Query:   541 VDADEKGEALKYIPKLVDPRERAEAYARIGMXXXXXX-XXXXXXXGELLGRLKLTFAQNA 599
             +DADEK EALKYIPKL D  ER EAYARIGM              GELL R + TF QNA
Sbjct:   786 IDADEKAEALKYIPKLSDLVERGEAYARIGMAKEAADCAAQANDGGELLERFRKTFVQNA 845

Query:   600 AASSIFDTLRDRLSFQGVS 618
                 IFDTL   + FQG S
Sbjct:   846 ----IFDTLL--MPFQGAS 858
GO:0003674 "molecular_function" evidence=ND
GO:0005622 "intracellular" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0007033 "vacuole organization" evidence=RCA;TAS
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0270754 vps16 "Vacuolar protein sorting-associated protein 16 homolog" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H269 VPS16 "Vacuolar protein sorting-associated protein 16 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2136772 Vps16 "vacuolar protein sorting 16 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G4N5E9 MGG_05256 "Vacuolar protein sorting-associated protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
RGD|1359414 Vps16 "vacuolar protein sorting 16 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050809-9 zgc:162584 "zgc:162584" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ47 VPS16 "Vacuolar protein sorting-associated protein 16 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9L7 VPS16 "Vacuolar protein sorting-associated protein 16 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZL5 VPS16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018876001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (838 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029140001
SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (912 aa)
    • • 0.832
GSVIVG00018148001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (428 aa)
    • • 0.637
GSVIVG00029182001
SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (986 aa)
   •• • 0.554
GSVIVG00024931001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (1006 aa)
   •  • 0.424
GSVIVG00014009001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (278 aa)
    • • 0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
pfam04840319 pfam04840, Vps16_C, Vps16, C-terminal region 2e-60
pfam04841408 pfam04841, Vps16_N, Vps16, N-terminal region 2e-50
>gnl|CDD|218286 pfam04840, Vps16_C, Vps16, C-terminal region Back     alignment and domain information 
 Score =  203 bits (519), Expect = 2e-60
 Identities = 103/310 (33%), Positives = 165/310 (53%), Gaps = 14/310 (4%)

Query: 283 ISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYL 342
           +SY  +A  A + GR +LA  L+E EPR+   VPLLL++ ++  AL KA ES DT L+  
Sbjct: 1   VSYVDIARRAYQEGRFELARKLLELEPRAEAHVPLLLNMDDDSIALKKAIESQDTSLIIQ 60

Query: 343 VIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKE 402
           V+ H+  K      F  ++  PLA  L+  + R      L DF+      Q++A   +++
Sbjct: 61  VLLHLKNKLTRSSLFMTLRIDPLALPLYLYFMRKQDRATLYDFYNQDDDFQDLAHFHFQQ 120

Query: 403 SWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVS 462
           + E  K             R   + +A   +S+ K    E K  E+  KLLR+Q  LE  
Sbjct: 121 A-ETEKEQEG---------RHSALPQAKDAYSQVKNSELEEKLIEDQLKLLRLQETLE-- 168

Query: 463 TKQAI-FVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALE 521
            + A  F D S+ DT+   I++G  + A +++++FK+ +KR +WLK+  L   + W+ LE
Sbjct: 169 DRFAGSFTDLSVHDTVSKLILIGQTKRAEQLRSDFKIPDKRLWWLKIKTLVEAKKWEELE 228

Query: 522 RFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAASQ 581
           + ++ K+ PIGY PFV  C+    K EA KYIP+L    E+ +AY  +G  +EA + A +
Sbjct: 229 QLAQSKKSPIGYMPFVTYCLSQGNKDEAKKYIPRLSYQ-EKVKAYVEVGDFREAIELAGK 287

Query: 582 AKDGELLGRL 591
            +D  +L  +
Sbjct: 288 ERDIPVLKEV 297

This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport. The role of VPS16 in this complex is not known. Length = 319
>gnl|CDD|218287 pfam04841, Vps16_N, Vps16, N-terminal region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 618
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 100.0
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 100.0
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 100.0
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 98.91
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 98.55
KOG4677554 consensus Golgi integral membrane protein [Intrace 98.23
PLN03077 857 Protein ECB2; Provisional 97.34
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 97.31
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 97.31
PLN03218 1060 maturation of RBCL 1; Provisional 97.03
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.01
PLN03077 857 Protein ECB2; Provisional 96.52
PLN03218 1060 maturation of RBCL 1; Provisional 96.39
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 96.2
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 94.55
KOG18111141 consensus Predicted Zn2+-binding protein, contains 93.18
PF13934226 ELYS: Nuclear pore complex assembly 91.57
smart00299140 CLH Clathrin heavy chain repeat homology. 91.1
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 90.18
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 89.95
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 89.26
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 89.02
smart00299140 CLH Clathrin heavy chain repeat homology. 88.41
KOG3616 1636 consensus Selective LIM binding factor [Transcript 87.24
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 86.95
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 83.13
KOG2111346 consensus Uncharacterized conserved protein, conta 80.23
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-154  Score=1242.17  Aligned_cols=587  Identities=42%  Similarity=0.694  Sum_probs=575.1

Q ss_pred             CcccCCCCeeEEEecCCcEEEEeCCCCCccccccCCCCCCCCceeeeCCCeEEEEECCeEEEEeCCCCceEeecCCCeEE
Q 007100            1 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVL   80 (618)
Q Consensus         1 ~~~Sp~g~~iAl~~~~g~l~v~ssd~~~~~~e~~~~~~~~p~~~~WCG~d~v~~~~~~~l~l~g~~~~~~~~~~~~~~~l   80 (618)
                      |+||||++||||||++|++||+|.|+++++|||+++...+|.||+|||||+|+++|++.+.++||.|+++.|+|+.+++|
T Consensus       222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~yd~t~~l  301 (829)
T KOG2280|consen  222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYYDETAIL  301 (829)
T ss_pred             EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCccccccCCCcee
Confidence            68999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             eecCCceEEeccCcchhhhccchhhhhhhccCCCChHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHHHHHHccccC
Q 007100           81 IPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEF  160 (618)
Q Consensus        81 ~~e~Dg~riit~~~~~~l~~Vp~~~~~if~igS~~P~a~L~~a~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~  160 (618)
                      ++|+|||||||++++|||+|||+++++||+|||++|||+|++|.++|++++++|||+|++++++|..||++||+||++||
T Consensus       302 ~~E~DGVRI~t~t~~EFl~rvp~~~enIF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef  381 (829)
T KOG2280|consen  302 SAEVDGVRIITSTSHEFLQRVPAETENIFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEF  381 (829)
T ss_pred             eeccCeeEEeccchHHHHHhCChhhhhHhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhhhhhccCCChhHHHHHhhhhhHHhccCCCCCcccccHHHHhcCChHHHHHHHHhcCChHHHHHHHH
Q 007100          161 DISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISE  240 (618)
Q Consensus       161 d~~~Qk~LL~AAsfGk~~~~~~~~~~fv~~c~~LRVLn~lr~~~igi~lT~~q~~~l~~~~li~rL~~r~~~~lA~~I~~  240 (618)
                      .|++||.||+||||||+|+.++|+++|+.+|+.|||||++|.+.+|||||++||.+|+.+++|+||+.|++|.+|++||+
T Consensus       382 ~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~  461 (829)
T KOG2280|consen  382 QPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAK  461 (829)
T ss_pred             CHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCh---hHHHHHHHHHHhhhcCCCChHHHHHHHHHhhcc--CCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCccch
Q 007100          241 YLGMNQ---EVVIMHWACSKITASLAIPDVTLLEILLDKLKL--CKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQV  315 (618)
Q Consensus       241 ~l~~~~---~~I~~~WA~~kI~~~~~~~D~~l~~~I~~kl~~--~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV  315 (618)
                      +++.|.   ++||.|||+.|| +.++.+|+++++.|.+||+.  .+||||++||++|+++||++||++|+++||+...||
T Consensus       462 ~l~~p~~~~~~Vl~~Wa~~kI-~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV  540 (829)
T KOG2280|consen  462 LLNLPESQGDRVLLEWARRKI-KQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQV  540 (829)
T ss_pred             HhCCccccccHHHHHHHHHHH-hccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchh
Confidence            999998   899999999999 45589999999999999998  999999999999999999999999999999999999


Q ss_pred             hhhhhcCchHHHHHHHHHcCChhHHHHHHHHHHhhCChhHHHHHHhcChhHHHHHHHHHHhcCHHHHHHHHHhcCChHHH
Q 007100          316 PLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEV  395 (618)
Q Consensus       316 ~lLl~~~~~~~AL~kAi~S~D~dLI~~vLl~l~~~l~~~~f~~~l~~~p~A~~l~~~y~~~~~~~~L~d~~~q~d~~~e~  395 (618)
                      |+||+|++++.||.||++|||+|||++||+||+++++.++|+++|+..|.|.++|..|+|+++...|+|||+|+|++.++
T Consensus       541 ~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~  620 (829)
T KOG2280|consen  541 PLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQAL  620 (829)
T ss_pred             HHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHH
Q 007100          396 AFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISD  475 (618)
Q Consensus       396 a~l~l~~a~~~~~~~~~~~~~~~~~~k~~~L~~a~~~~~~~~~~~f~~~~~~e~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~  475 (618)
                      |.++++..+..+..+          ++...|+.+.+.|.++++..|++++++++++|+.+|..|+..++ .+|+|+||+|
T Consensus       621 a~~~~q~~~~~~~~~----------~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~-~~f~dlSl~d  689 (829)
T KOG2280|consen  621 ASFHLQASYAAETIE----------GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG-GSFVDLSLHD  689 (829)
T ss_pred             hhhhhhhhhhhhhhc----------ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-cccccCcHHH
Confidence            999999987766665          88999999999999999999999999999999999999999998 6899999999


Q ss_pred             HHHHHHHcCCcchHHhHHhHcCcChHHHHHHHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhcc
Q 007100          476 TIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPK  555 (618)
Q Consensus       476 Ti~~li~~~~~k~a~kl~k~fKVsdkr~~~lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~eA~kyI~k  555 (618)
                      ||.+|+..|+.+.|++|+++||||||||||+||.+|++.++|++|++|++||||||||+|||++|+++||++||.|||+|
T Consensus       690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYipr  769 (829)
T KOG2280|consen  690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPR  769 (829)
T ss_pred             HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHccCCh
Q 007100          556 LVDPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLTFAQNA  599 (618)
Q Consensus       556 i~d~e~r~~l~~k~~~~~eA~~~a~~~kd~~~L~~i~~~~~~~~  599 (618)
                      |++..+|+++|+++|++++|++.|+++||...|..++.+++.++
T Consensus       770 v~~l~ekv~ay~~~~~~~eAad~A~~~rd~~~L~ev~~~~~~~~  813 (829)
T KOG2280|consen  770 VGGLQEKVKAYLRVGDVKEAADLAAEHRDGAELSEVLSKCTGAP  813 (829)
T ss_pred             cCChHHHHHHHHHhccHHHHHHHHHHhcChHHHHHHHHhcCCCC
Confidence            99888999999999999999999999999999999999996443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] Back     alignment and domain information
>PF13934 ELYS: Nuclear pore complex assembly Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query618
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.8 bits (149), Expect = 5e-10
 Identities = 88/608 (14%), Positives = 173/608 (28%), Gaps = 162/608 (26%)

Query: 70  VQYFYDEPL-VLIP------ECDGV-----RILSNSSMEFLQRVPASTEQIFAIGSTSPA 117
            QY Y + L V         +C  V      ILS   ++ +     +             
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-------- 65

Query: 118 ALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQA 177
             L+  L        +             K VE  +    ++F +S  +T  R  S    
Sbjct: 66  -RLFWTLLSKQEEMVQ-------------KFVEE-VLRINYKFLMSPIKTEQRQPS-MMT 109

Query: 178 FCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALR 237
                QRDR+              D ++    ++ + +         +L  A   LL LR
Sbjct: 110 RMYIEQRDRLY------------NDNQVFAKYNVSRLQ------PYLKLRQA---LLELR 148

Query: 238 ISEYL---GMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCK---GISYAAVA-A 290
            ++ +   G+            K    +A      L++ L     CK    I +  +   
Sbjct: 149 PAKNVLIDGVL--------GSGK--TWVA------LDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 291 HADKSGRRKLAAMLVEHEP----RSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFH 346
           ++ ++    L  +L + +P    RS     + L I      L +  +S   +   LV+ +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 347 IWQKRPALEFFG-----MIQTRPLACDLFTVYARCYKHEFLKDFF--LSTGQLQEVAFLL 399
           +   + A   F      ++ TR        + A    H  L      L+  +++ +  L 
Sbjct: 253 VQNAK-AWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLK 309

Query: 400 W--KESWEL-----GKNPMASN--GSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHA 450
           +      +L       NP   +    ++    +   +    +  +      ES       
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 451 KLLRIQ-HELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKTEFKVSEKRWYWLK-- 507
              R     L      ++F  S                          +    W+ +   
Sbjct: 369 AEYRKMFDRL------SVFPPS--------------------AHIPTILLSLIWFDVIKS 402

Query: 508 -VFALATK-RDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEA 565
            V  +  K   +  +E+  KE    I    ++E  V  + +    +    +VD     + 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHR---SIVDHYNIPKT 458

Query: 566 YARIGMAKEAAD------------AASQAKDGELLGR--LKLTFAQN---------AAAS 602
           +    +     D                 +   L     L   F +           A+ 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 603 SIFDTLRD 610
           SI +TL+ 
Sbjct: 519 SILNTLQQ 526

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 96.55
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 96.23
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 95.87
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 95.29
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 94.02
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 90.83
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 90.76
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 89.11
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 87.97
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
Probab=96.55  E-value=0.18  Score=61.20  Aligned_cols=165  Identities=17%  Similarity=0.141  Sum_probs=108.8

Q ss_pred             HHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHcCCcchHHhH---HhHcCcCh
Q 007100          424 KRIEKAHSLFSETKEHTFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKV---KTEFKVSE  500 (618)
Q Consensus       424 ~~L~~a~~~~~~~~~~~f~~~~~~e~~~Ll~~Q~~Le~~~~~~~f~~~Sl~~Ti~~li~~~~~k~a~kl---~k~fKVsd  500 (618)
                      ..+.+|.+++.+..+...+.+.-.-+.+.-++...++.=.+ . -....+.+.+..+...|+.+.|-+.   +.+.. ++
T Consensus      1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiK-A-dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e 1166 (1630)
T 1xi4_A         1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIK-A-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RE 1166 (1630)
T ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHh-c-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-cc
Confidence            34555555554443333443333333333334333332111 0 0112355677777788887665332   22221 22


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHhhccCCCCCCchHHHHHHHhcCCHHHHHHhhccCCCHHHHHHHHHHcCCHHHHHHHHH
Q 007100          501 KRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLVDPRERAEAYARIGMAKEAADAAS  580 (618)
Q Consensus       501 kr~~~lkl~aLa~~~~wdeLe~f~~sKKspIgyepfv~~~~~~~~~~eA~kyI~ki~d~e~r~~l~~k~~~~~eA~~~a~  580 (618)
                      -...--..-+|++.+++++++.|.+...+ -.|.-..+.|...|...+|..|-.+++++......|+++|++.+|++.|.
T Consensus      1167 ~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A         1167 SYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred             ccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence            11111267789999999999999874444 47778999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHH
Q 007100          581 QAKDGELLGRLK  592 (618)
Q Consensus       581 ~~kd~~~L~~i~  592 (618)
                      +.++.....++-
T Consensus      1246 KA~n~~aWkev~ 1257 (1630)
T 1xi4_A         1246 KANSTRTWKEVC 1257 (1630)
T ss_pred             HhCCHHHHHHHH
Confidence            999998766443
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query618
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 94.03
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.03  E-value=0.47  Score=46.67  Aligned_cols=112  Identities=14%  Similarity=0.067  Sum_probs=68.8

Q ss_pred             HhhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCccchhhhhhcCchHHHHHHHHHcCChhHHHHHHHHHHhhCChh
Q 007100          275 DKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPAL  354 (618)
Q Consensus       275 ~kl~~~~~is~~~IA~~A~~~gR~~LA~~Ll~~E~~~~~qV~lLl~~~~~~~AL~kAi~S~D~dLI~~vLl~l~~~l~~~  354 (618)
                      +=|++..+-.-.+|+..+.+.|..+.|..+-..-.+..+-+..++.+++++.|++-+-+.++++++..+...+.+.... 
T Consensus         7 ~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~-   85 (336)
T d1b89a_           7 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEF-   85 (336)
T ss_dssp             TTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH-
T ss_pred             HHHcCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHH-
Confidence            3344556678888999999999999999999999999999999999999999999999999999999999888776443 


Q ss_pred             HHHHHHh----cChh-HHHHHHHHHHhcCHHHHHHHHH
Q 007100          355 EFFGMIQ----TRPL-ACDLFTVYARCYKHEFLKDFFL  387 (618)
Q Consensus       355 ~f~~~l~----~~p~-A~~l~~~y~~~~~~~~L~d~~~  387 (618)
                      ..-.++.    .+|. ...+...|-..+..+.|..|+.
T Consensus        86 ~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le  123 (336)
T d1b89a_          86 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLE  123 (336)
T ss_dssp             HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            2112211    1222 2234444544455666655555