Citrus Sinensis ID: 007111
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 617 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MA55 | 668 | Acyl-CoA-binding domain-c | no | no | 0.494 | 0.456 | 0.365 | 2e-57 | |
| Q8RWD9 | 648 | Acyl-CoA-binding domain-c | no | no | 0.487 | 0.464 | 0.358 | 1e-56 | |
| O14248 | 1125 | Tip elongation aberrant p | yes | no | 0.317 | 0.174 | 0.275 | 3e-19 | |
| Q5EA50 | 372 | Rab9 effector protein wit | yes | no | 0.372 | 0.618 | 0.285 | 3e-18 | |
| A8JAM0 | 1159 | Coiled-coil domain-contai | N/A | no | 0.299 | 0.159 | 0.304 | 5e-18 | |
| Q7M3S9 | 943 | RING finger protein B OS= | no | no | 0.333 | 0.218 | 0.295 | 6e-18 | |
| Q39610 | 4499 | Dynein alpha chain, flage | N/A | no | 0.213 | 0.029 | 0.352 | 8e-18 | |
| Q61191 | 2045 | Host cell factor 1 OS=Mus | yes | no | 0.337 | 0.101 | 0.289 | 3e-17 | |
| P51611 | 2090 | Host cell factor 1 OS=Mes | N/A | no | 0.337 | 0.099 | 0.289 | 3e-17 | |
| Q5E9A7 | 406 | Kelch domain-containing p | no | no | 0.406 | 0.618 | 0.288 | 4e-17 |
| >sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 174/309 (56%), Gaps = 4/309 (1%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSP--SSLPLKIPACRGHSLISWGKK 58
M + GG L D+ VL+ ++W+ +K+ +S P + C GHSLI+W K
Sbjct: 196 MYIYGGNHNGRYLGDLHVLDLKSWTWSRVETKVATESQETSTPTLLAPCAGHSLIAWDNK 255
Query: 59 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG 118
+L +GG T S+ + V FD T WS+++ G PV+R G +V L++FGG+D
Sbjct: 256 LLSIGGHTKDPSESMQVKVFDPHTITWSMLKTYGKPPVSRGGQSVTMVGKTLVIFGGQDA 315
Query: 119 KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178
KR LNDLH+ DL ++TW + G PSPRS+H AA++ ++ LLIFGG S + +DL+
Sbjct: 316 KRSLLNDLHILDLDTMTWDEIDAVGVSPSPRSDHAAAVHAERFLLIFGGGSHATCFDDLH 375
Query: 179 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238
LD +TM W+R +G P+PRAG GV G W+I GGG K +E+++ ++ WS
Sbjct: 376 VLDLQTMEWSRPAQQGDAPTPRAGHAGVTIGENWFIVGGGDNKSGASESVVLNMSTLAWS 435
Query: 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRST 298
V + +++G +LV+ + +D LVAFGG +N++ +L + + S + T
Sbjct: 436 VVASVQGRVPLASEGLSLVVSSYNGEDVLVAFGGYNGRYNNEINLL--KPSHKSTLQTKT 493
Query: 299 PNAKGPGQL 307
A PG L
Sbjct: 494 LEAPLPGSL 502
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Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 172/307 (56%), Gaps = 6/307 (1%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYL--SPSSLPLKIPACRGHSLISWGKK 58
M + GG L D+ VL+ ++W+ +K+ +S P K+ C GHSLI W +
Sbjct: 197 MYMYGGNHNGRYLGDLHVLDLKNWTWSRVETKVVTGSQETSSPAKLTHCAGHSLIPWDNQ 256
Query: 59 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG 118
+L +GG T S+ + V FD WS+++ G P++R G +V L++FGG+D
Sbjct: 257 LLSIGGHTKDPSESMPVMVFDLHCCSWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDA 316
Query: 119 KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178
KR LNDLH+ DL ++TW + G+ P+PRS+H AA++ ++ LLIFGG S + +DL+
Sbjct: 317 KRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGGGSHATCFDDLH 376
Query: 179 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238
LD +TM W+R +G P+PRAG GV G WYI GGG K ++T++ ++ WS
Sbjct: 377 VLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGENWYIVGGGDNKSGASKTVVLNMSTLAWS 436
Query: 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES----SMG 294
V + +++G +LV+ + +D +VAFGG +N+V VL S MG
Sbjct: 437 VVTSVQEHVPLASEGLSLVVSSYNGEDIVVAFGGYNGHYNNEVNVLKPSHKSSLKSKIMG 496
Query: 295 RRSTPNA 301
+ P++
Sbjct: 497 ASAVPDS 503
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Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Arabidopsis thaliana (taxid: 3702) |
| >sp|O14248|TEA3_SCHPO Tip elongation aberrant protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 40/236 (16%)
Query: 45 PACRGHSLISWGKKVLLVGGKTDSGSDRV------SVWTFDTETECWSVVEAKGDIPVAR 98
PA GHS++ + L GG DS +D S++ ++ ++ W++V + +P R
Sbjct: 111 PARVGHSIVCSADTIYLFGG-CDSETDSTFEVGDNSLYAYNFKSNQWNLVSTQSPLPSPR 169
Query: 99 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL------------------------ 134
+GH+++ S L +FGGE + + LND+H+FD K +
Sbjct: 170 TGHSMLLVDSKLWIFGGE-CQGKYLNDIHLFDTKGVDRRTQSELKQKANANNVEKANMEF 228
Query: 135 -----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 189
+W + P PRSNH L K + + GG + + L+DL+ D ET+ WT
Sbjct: 229 DETDWSWETPFLHSSSPPPRSNHSVTLVQGK-IFVHGGHNDTGPLSDLWLFDLETLSWTE 287
Query: 190 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETL-IFDILKGEWSVAITSP 244
++ G P PR G YI GG K L F+ + WS+ +++P
Sbjct: 288 VRSIGRFPGPREGHQATTIDDTVYIYGGRDNKGLILNELWAFNYSQQRWSL-VSNP 342
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Acts as a cell end marker required for efficient new end take-off (NETO), whereby growth is activated at the cell end to generate bipolarity in extending cells. Also required for proper placement of the septum. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 12/242 (4%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+ +VGG N DV ++ W A+S+ L IP+C HS+ W
Sbjct: 50 VFIVGGADPNRSFSDVHTIDLGTHQWDLATSEGLLPRYEHTSFIPSCTPHSI--W----- 102
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGK 119
V G D +R + + +T W+ E G P R+ HT A L +FGG +
Sbjct: 103 -VFGGADQSGNRNCLQVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERG 161
Query: 120 RRKLND--LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 177
+ + D LH+FD +LTW G PSPR HV K L I GG + +DL
Sbjct: 162 AQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTK-LFIHGGLAGDNFYDDL 220
Query: 178 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237
+ +D M W +++ G P+ A V G Y+ GG + + I K W
Sbjct: 221 HCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHW 280
Query: 238 SV 239
++
Sbjct: 281 TL 282
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Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Bos taurus (taxid: 9913) |
| >sp|A8JAM0|CC135_CHLRE Coiled-coil domain-containing protein lobo homolog (Fragment) OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 49 GHSLISWGKKVLLVGGKTD-SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV--R 105
GH+L G +L+ GG+ GS ++ + W KG+ P R H
Sbjct: 300 GHTLTQVGSMLLIFGGQLQKDGSTTNDLFWMTMDRMEWHNQPCKGEKPPPRYNHAACYDE 359
Query: 106 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 165
++ L++FGG +R++LND++ DL S TW GT P+PR VA + ++++F
Sbjct: 360 ENNRLVVFGGRTAERKRLNDIYFLDLDSWTWFKPSTEGTAPTPREQAVATFW-AGSMVLF 418
Query: 166 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKK 222
GG + NDL+ LD W++ G PSPR C LC G ++ GG R
Sbjct: 419 GGHAIGGRTNDLFLLDLGAWQWSQPAFSGTAPSPRQACA--LCIGHGNLLFVHGG--RNN 474
Query: 223 RHAETL-IFDILKGEWS 238
E L + D + W+
Sbjct: 475 FVLEDLHVMDFVSKNWT 491
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May play a role in the regulation of germ cells differentiation, particularly during meiosis and spermiogenesis (By similarity). May be involved in sperm motility. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 102/230 (44%), Gaps = 24/230 (10%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW----- 55
IV GG S N +D+Q N SW+ + + +PS GHS + +
Sbjct: 31 FIVFGGNS-NRAFNDIQYYNIFNNSWSKIEA-VGNAPSER-------YGHSAVLYQSQSR 81
Query: 56 ----GKKVLLVGGKTDSG--SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSV 109
+++ GG+ S SD ++ + W V K R+GHT V
Sbjct: 82 PYSDSYQIIFFGGRATSKPFSDINILYVNSNRSFIWKQVTTKS--IEGRAGHTAVVYRQN 139
Query: 110 LILFGGEDGKRRKL-NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 168
L++FGG + + K N + +F L+S W C G PS R+ H ++ + IFGG
Sbjct: 140 LVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCGGVIPSARATHSTFQVNNNKMFIFGGY 199
Query: 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGG 217
K ND+Y LD ET IW +++ +G P PR+G + K I GG
Sbjct: 200 DGKKYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGG 249
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA11 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 85 WSVVEAKGDIPVARSGHTVVRASSVLILFGG---EDGKRRKLNDLHMFDLKS---LTWLP 138
W V A+G+ P RSGH+ +LFGG +DGK NDL+ D W
Sbjct: 5 WEVPNAQGEAPCPRSGHSFTVLGERFVLFGGCGRKDGKAAAFNDLYELDTSDPDEYKWKE 64
Query: 139 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS 198
L P PR+ H A DDK LL+FGG +K ND++ +++ WT +++ G P
Sbjct: 65 L-VVANAPPPRARHAAIALDDKRLLVFGGLNKRIRYNDVWLFNYDDKSWTCMEVEGAAPE 123
Query: 199 PRAGCCGVLCGTKWYIAGG 217
PRA G++ +I GG
Sbjct: 124 PRAHFTATRFGSRVFIFGG 142
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Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|Q61191|HCFC1_MOUSE Host cell factor 1 OS=Mus musculus GN=Hcfc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 3e-17, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+IVV G G++D++ V N W + + +P P C + + G ++L
Sbjct: 44 LIVVFGGGNEGIVDELHVYNTATNQWFIPAVR-----GDIP---PGCAAYGFVCDGTRLL 95
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAK----GDIPVARSGHTVVRASSVLILFGG- 115
+ GG + G ++ W ++AK G P R GH+ + LFGG
Sbjct: 96 VFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGL 155
Query: 116 ----EDGKR---RKLNDLHMFDLKS----LTWLPLHCTGTGPSPRSNHVAALYDDKN--- 161
ED K R LNDL++ +L+ + W G P PR +H A +Y +K+
Sbjct: 156 ANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKK 215
Query: 162 --LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 217
L+I+GG S + L DL++LD ET+ W + + G P PR+ G K Y+ GG
Sbjct: 216 SKLVIYGGMSGCR-LGDLWTLDIETLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGG 272
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Involved in control of the cell cycle. Also antagonizes transactivation by ZBTB17 and GABP2; represses ZBTB17 activation of the p15(INK4b) promoter and inhibits its ability to recruit p300. Coactivator for EGR2 and GABP2. Tethers the chromatin modifying Set1/Ash2 histone H3 'Lys-4' methyltransferase (H3K4me) and Sin3 histone deacetylase (HDAC) complexes (involved in the activation and repression of transcription respectively) together. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) |
| >sp|P51611|HCFC1_MESAU Host cell factor 1 OS=Mesocricetus auratus GN=HCFC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 3e-17, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+IVV G G++D++ V N W + + +P P C + + G ++L
Sbjct: 44 LIVVFGGGNEGIVDELHVYNTATNQWFIPAVR-----GDIP---PGCAAYGFVCDGTRLL 95
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAK----GDIPVARSGHTVVRASSVLILFGG- 115
+ GG + G ++ W ++AK G P R GH+ + LFGG
Sbjct: 96 VFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGL 155
Query: 116 ----EDGKR---RKLNDLHMFDLKS----LTWLPLHCTGTGPSPRSNHVAALYDDKN--- 161
ED K R LNDL++ +L+ + W G P PR +H A +Y +K+
Sbjct: 156 ANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTEKDNKK 215
Query: 162 --LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 217
L+I+GG S + L DL++LD ET+ W + + G P PR+ G K Y+ GG
Sbjct: 216 SKLVIYGGMSGCR-LGDLWTLDIETLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGG 272
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Involved in control of the cell cycle. Also antagonizes transactivation by ZBTB17 and GABP2; represses ZBTB17 activation of the p15(INK4b) promoter and inhibits its ability to recruit p300. Coactivator for EGR2 and GABP2. Tethers the chromatin modifying Set1/Ash2 histone H3 'Lys-4' methyltransferase (H3K4me) and Sin3 histone deacetylase (HDAC) complexes (involved in the activation and repression of transcription respectively) together. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mesocricetus auratus (taxid: 10036) |
| >sp|Q5E9A7|KLDC2_BOVIN Kelch domain-containing protein 2 OS=Bos taurus GN=KLHDC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 118/295 (40%), Gaps = 44/295 (14%)
Query: 34 YLSPSSLPLKIPACR-GHSLISWGKKVLLVGGK--------TDSGSDRVSVWTFDTETEC 84
Y S L PA R GH +S G+ + + GG D R +W ++ ET
Sbjct: 18 YEGYESAELACPAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREELWIYNMETGR 77
Query: 85 WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLH 140
W + +GD+P + SG V VL LFGG R N +M D +S L W +
Sbjct: 78 WKKINTEGDVPPSMSGSCAVCVDRVLYLFGGHH-SRGNTNKFYMLDSRSTDRVLHWERID 136
Query: 141 CTGTGPSPRSNHVAALYDDKNLLIFGG----------------------SSKSKTLND-L 177
C G PS + +Y +K L+ FGG SS + ND +
Sbjct: 137 CQGVPPSSKDKLGVWVYKNK-LIFFGGYGYLPEDKVLGTFEFDETSFWNSSHPRGWNDHV 195
Query: 178 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237
+ LD ET IW++ G PSPRA G K ++ GG R R + ++ EW
Sbjct: 196 HILDTETFIWSQPITTGKPPSPRAAHACATVGNKGFVFGGRYRDARMNDLHYLNLDTWEW 255
Query: 238 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI--KKEPSNQVEVLSIEKNE 290
+ I V G + + D L FGG K+P + I KNE
Sbjct: 256 NELIPQGICPV----GRSWHSLTPVSSDHLFLFGGFTTDKQPLSDAWTYCISKNE 306
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Represses CREB3-mediated transcription by interfering with CREB3-DNA binding. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 617 | ||||||
| 359477427 | 717 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.857 | 0.789 | 0.0 | |
| 225432358 | 706 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.855 | 0.786 | 0.0 | |
| 224130424 | 707 | predicted protein [Populus trichocarpa] | 0.974 | 0.850 | 0.774 | 0.0 | |
| 255551677 | 713 | acyl-CoA binding protein, putative [Rici | 0.987 | 0.854 | 0.770 | 0.0 | |
| 356563867 | 708 | PREDICTED: acyl-CoA-binding domain-conta | 0.978 | 0.853 | 0.749 | 0.0 | |
| 449432819 | 678 | PREDICTED: acyl-CoA-binding domain-conta | 0.933 | 0.849 | 0.722 | 0.0 | |
| 357478641 | 743 | Acyl-CoA-binding domain-containing prote | 0.987 | 0.819 | 0.727 | 0.0 | |
| 356519992 | 711 | PREDICTED: acyl-CoA-binding domain-conta | 0.988 | 0.857 | 0.736 | 0.0 | |
| 224110584 | 663 | predicted protein [Populus trichocarpa] | 0.904 | 0.841 | 0.721 | 0.0 | |
| 357478643 | 735 | Acyl-CoA-binding domain-containing prote | 0.974 | 0.817 | 0.716 | 0.0 |
| >gi|359477427|ref|XP_003631976.1| PREDICTED: uncharacterized protein LOC100264848 isoform 2 [Vitis vinifera] gi|297736898|emb|CBI26099.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/619 (78%), Positives = 537/619 (86%), Gaps = 4/619 (0%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
M+VVGGES NGLL+DVQVLNFDRF+W+A SSK+YLSP+SLPLKIPAC+GHSL+SWG+KVL
Sbjct: 101 MVVVGGESENGLLEDVQVLNFDRFTWSAPSSKIYLSPTSLPLKIPACKGHSLVSWGQKVL 160
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
LVGGKT+ GS+RVSVW FD ETECWS++EAKGDIPVARSGHTVVRASSVLILFGGED KR
Sbjct: 161 LVGGKTEPGSERVSVWAFDIETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSKR 220
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK L IFGG SKS+TLNDLYSL
Sbjct: 221 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKILFIFGGGSKSRTLNDLYSL 280
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETMIW+RIK + PSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLI+D+LK EWSV
Sbjct: 281 DFETMIWSRIKKKRGFPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIYDVLKVEWSV- 339
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
I P+SS+T+NKGF+LVLVQHKEKDFLVAFGG KKEPSN+VEVL EKNE S+ RRST N
Sbjct: 340 IAGPTSSITTNKGFSLVLVQHKEKDFLVAFGGTKKEPSNEVEVLIKEKNEVSISRRSTLN 399
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
KG L E RSSS GLA QL NGAPQ V+SV RQNLASAIEQHGSGRKSLSE +LVD
Sbjct: 400 -KGSELFLSENRSSSAGLASQLSNGAPQHPVESVMRQNLASAIEQHGSGRKSLSESSLVD 458
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PNP GNVSL KQF NEEEY+TAVK ++ EDE Q +E+R D G S+ K
Sbjct: 459 PNPAPGNVSLRKQFHNEEEYNTAVKTLRSLEDECYSSQASEHRMKLFDTGIHGSLAGCKI 518
Query: 421 NIDEAP-LFDYENSNPLVQGIGNFHVDNDNVIFPDND-KSGALSGPSSIYQFYESKMAAL 478
N+DE P + D ENSN QG GN VDND+ +FP++ KS A S PSSIYQ YE+KMAAL
Sbjct: 519 NVDEIPSVLDSENSNAYNQGNGNLLVDNDDEVFPESHGKSVAFSAPSSIYQLYETKMAAL 578
Query: 479 IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538
IRKNGILEGQL AAL +REA EKN SSVLK+RQEMEKKLAD+LKEME+LKEKLAG+ELAQ
Sbjct: 579 IRKNGILEGQLTAALASREAVEKNLSSVLKNRQEMEKKLADTLKEMEMLKEKLAGVELAQ 638
Query: 539 EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 598
EEAN+LSN+VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK
Sbjct: 639 EEANNLSNMVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 698
Query: 599 QRLQSLENRAPTPRKPFNV 617
QRLQS+ENRAPTPRKPF+V
Sbjct: 699 QRLQSMENRAPTPRKPFHV 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432358|ref|XP_002275331.1| PREDICTED: uncharacterized protein LOC100264848 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/619 (78%), Positives = 535/619 (86%), Gaps = 15/619 (2%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
M+VVGGES NGLL+DVQVLNFDRF+W+A SSK+YLSP+SLPLKIPAC+GHSL+SWG+KVL
Sbjct: 101 MVVVGGESENGLLEDVQVLNFDRFTWSAPSSKIYLSPTSLPLKIPACKGHSLVSWGQKVL 160
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
LVGGKT+ GS+RVSVW FD ETECWS++EAKGDIPVARSGHTVVRASSVLILFGGED KR
Sbjct: 161 LVGGKTEPGSERVSVWAFDIETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSKR 220
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK L IFGG SKS+TLNDLYSL
Sbjct: 221 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKILFIFGGGSKSRTLNDLYSL 280
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETMIW+RIK + PSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLI+D+LK EWSV
Sbjct: 281 DFETMIWSRIKKKRGFPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIYDVLKVEWSV- 339
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
I P+SS+T+NKGF+LVLVQHKEKDFLVAFGG KKEPSN+VEVL EKNE S+ RRST N
Sbjct: 340 IAGPTSSITTNKGFSLVLVQHKEKDFLVAFGGTKKEPSNEVEVLIKEKNEVSISRRSTLN 399
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
KG L E RSSS GLA QL NGAPQ V+SV RQNLASAIEQHGSGRKSLSE +LVD
Sbjct: 400 -KGSELFLSENRSSSAGLASQLSNGAPQHPVESVMRQNLASAIEQHGSGRKSLSESSLVD 458
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PNP GNVSL KQF NEEEY+TAVK ++ EDE Q ++N T+ C K
Sbjct: 459 PNPAPGNVSLRKQFHNEEEYNTAVKTLRSLEDECYSSQVSDN---------STAGC--KI 507
Query: 421 NIDEAP-LFDYENSNPLVQGIGNFHVDNDNVIFPDND-KSGALSGPSSIYQFYESKMAAL 478
N+DE P + D ENSN QG GN VDND+ +FP++ KS A S PSSIYQ YE+KMAAL
Sbjct: 508 NVDEIPSVLDSENSNAYNQGNGNLLVDNDDEVFPESHGKSVAFSAPSSIYQLYETKMAAL 567
Query: 479 IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538
IRKNGILEGQL AAL +REA EKN SSVLK+RQEMEKKLAD+LKEME+LKEKLAG+ELAQ
Sbjct: 568 IRKNGILEGQLTAALASREAVEKNLSSVLKNRQEMEKKLADTLKEMEMLKEKLAGVELAQ 627
Query: 539 EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 598
EEAN+LSN+VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK
Sbjct: 628 EEANNLSNMVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 687
Query: 599 QRLQSLENRAPTPRKPFNV 617
QRLQS+ENRAPTPRKPF+V
Sbjct: 688 QRLQSMENRAPTPRKPFHV 706
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130424|ref|XP_002328605.1| predicted protein [Populus trichocarpa] gi|222838587|gb|EEE76952.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/617 (77%), Positives = 527/617 (85%), Gaps = 16/617 (2%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
MIVVGGESG+GLLDDVQVL FD+F+WT+ SSKLYLSPSSLPLKIPACRGH L+SWGKK L
Sbjct: 106 MIVVGGESGSGLLDDVQVLKFDQFTWTSISSKLYLSPSSLPLKIPACRGHCLVSWGKKAL 165
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
L+GGKTD SDR+SVW FDTETECWS+VEAKGDIP+AR+GHTVVRASSVLILFGGED KR
Sbjct: 166 LIGGKTDPASDRISVWAFDTETECWSLVEAKGDIPIARNGHTVVRASSVLILFGGEDAKR 225
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
+KLNDLHMFDLKS TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG+SKS+TLNDLYSL
Sbjct: 226 KKLNDLHMFDLKSFTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGTSKSRTLNDLYSL 285
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETM+W+R KIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH+ETLI+DILK EWSVA
Sbjct: 286 DFETMVWSRTKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHSETLIYDILKMEWSVA 345
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
SP SS+T+NKGF+LVLVQHKEKDFLVAFGG KKEPSNQVEV+ IEKNESS GR S
Sbjct: 346 FASPPSSITTNKGFSLVLVQHKEKDFLVAFGGSKKEPSNQVEVMGIEKNESSTGRHSAL- 404
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
+KGPG+LLFEKRSSST LA QLG G+ QRS DSVARQNLASAIEQHGSGRKSLS+ LVD
Sbjct: 405 SKGPGRLLFEKRSSSTVLAAQLGTGSSQRSADSVARQNLASAIEQHGSGRKSLSDSLLVD 464
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PN S NVS K+F +EEE A K +N ED+ S + + V K
Sbjct: 465 PNSASRNVSHRKEFHHEEENRIAAKTARNLEDDNS--------------SSPPNNPVSKI 510
Query: 421 NIDEAPLFDYENSNPLVQGIGNFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIR 480
N + + +F+ E N QGIGN VDN++V+ P++D + +SIYQ YE+K+AALIR
Sbjct: 511 NAEMSSIFEMETPNSHNQGIGNVSVDNEDVVSPESDCTTG-GARASIYQLYETKIAALIR 569
Query: 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540
KNGILEGQLAAAL REAAEKN SS+LKSRQEMEKKL DS++EMELLKEKLAG+ELAQEE
Sbjct: 570 KNGILEGQLAAALAGREAAEKNLSSILKSRQEMEKKLVDSVREMELLKEKLAGVELAQEE 629
Query: 541 ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR 600
ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR
Sbjct: 630 ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR 689
Query: 601 LQSLENRAPTPRKPFNV 617
LQS+ENR TPRKPF V
Sbjct: 690 LQSMENRTSTPRKPFRV 706
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551677|ref|XP_002516884.1| acyl-CoA binding protein, putative [Ricinus communis] gi|223543972|gb|EEF45498.1| acyl-CoA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/620 (77%), Positives = 535/620 (86%), Gaps = 11/620 (1%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
MIVVGGESGNGLLDDVQVLNFD+F+WT SSKLYLSPSSLPLKIPAC+GHSL++WGKK L
Sbjct: 102 MIVVGGESGNGLLDDVQVLNFDQFTWTTISSKLYLSPSSLPLKIPACKGHSLVAWGKKAL 161
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
L+GGKTD +DR+SVW FDTETECWS++EAKGD+PVARSGHTVVRASSVLILFGGED KR
Sbjct: 162 LIGGKTDPSTDRISVWAFDTETECWSLLEAKGDVPVARSGHTVVRASSVLILFGGEDAKR 221
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
RKLNDLHMFDLKSLTWLPLHCTGTGPSPR NHVAALYDDK LLIFGG+SKS+TLNDLYSL
Sbjct: 222 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRCNHVAALYDDKMLLIFGGTSKSRTLNDLYSL 281
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETM+W+RIKI+GFHPSPRAGCCGVLCGTKWYI GGGSRKKRH+ETLIFDI+K EWSVA
Sbjct: 282 DFETMVWSRIKIQGFHPSPRAGCCGVLCGTKWYIGGGGSRKKRHSETLIFDIVKVEWSVA 341
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
S SS+T NKGF+LVLVQHKEKDFLVAFGG KKEPSNQVEV+ ++K+E SM R+S
Sbjct: 342 FASSPSSITINKGFSLVLVQHKEKDFLVAFGGSKKEPSNQVEVIGMDKSE-SMSRQSAA- 399
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
KGPG LF KRSSST LA QL G+ QRSVD++ARQNLAS +E HGSGRKSLSE LV+
Sbjct: 400 GKGPGP-LFGKRSSSTALAAQLNAGSSQRSVDTLARQNLASVVEHHGSGRKSLSE-TLVE 457
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PN +SGNVSL KQF +EEE+S AVKM KN ED + ++R NQSD QT+I +GK
Sbjct: 458 PNSVSGNVSLRKQF-HEEEHSAAVKMAKNIEDGSFSSLAVDHRINQSDTSNQTNISIGKI 516
Query: 421 NIDEAP-LFDYENSNPLVQGIGNFHVDNDNVIF--PDNDKSGALSGPSSIYQFYESKMAA 477
+E +FD ENS+ QG+ N V+N++ + PD GA SSIYQ YE+K+A+
Sbjct: 517 IAEETSCVFDSENSHSQNQGVENHLVENEDALVSEPDGMTGGA---HSSIYQLYETKIAS 573
Query: 478 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537
LIRKNG+LEGQLAAAL +REAAEKN SSVLKSRQE+E+KL D+L+EMELLKEKLAG+ELA
Sbjct: 574 LIRKNGVLEGQLAAALASREAAEKNLSSVLKSRQEIERKLTDTLREMELLKEKLAGVELA 633
Query: 538 QEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHL 597
QEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVL GERARAFQLQVEVFHL
Sbjct: 634 QEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLTGERARAFQLQVEVFHL 693
Query: 598 KQRLQSLENRAPTPRKPFNV 617
KQRLQS+ENR PTPRKPFNV
Sbjct: 694 KQRLQSMENRVPTPRKPFNV 713
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563867|ref|XP_003550179.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/626 (74%), Positives = 529/626 (84%), Gaps = 22/626 (3%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
MIVVGGESG GLLDDVQVLNFDRFSWT ASSKLYLSPSSLPLKIPAC+GHSL+SWGKK L
Sbjct: 95 MIVVGGESGTGLLDDVQVLNFDRFSWTTASSKLYLSPSSLPLKIPACKGHSLVSWGKKAL 154
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
L+GGKTD GSDR+SVW FDTETECWS++EAKGDIPVARSGH+VVRASSVLILFGGED KR
Sbjct: 155 LIGGKTDPGSDRISVWAFDTETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDAKR 214
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
RKLNDLHMFDLKSLTWLPLH TGT PSPR NHVAALYDDK L IFGGSSKS+TLNDLYSL
Sbjct: 215 RKLNDLHMFDLKSLTWLPLHYTGTAPSPRFNHVAALYDDKILYIFGGSSKSRTLNDLYSL 274
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETM W+R+K+RGFHPSPRAGCCGVLCGTKWYI GGGSRKKRH ET+IFDI+K EWSVA
Sbjct: 275 DFETMAWSRVKMRGFHPSPRAGCCGVLCGTKWYITGGGSRKKRHGETVIFDIVKNEWSVA 334
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
ITSP SS+T+NKGF++VLVQHKEKDFLVAFGG KKEPSNQVEVL +EKNES++GR+S P
Sbjct: 335 ITSPPSSITTNKGFSMVLVQHKEKDFLVAFGGSKKEPSNQVEVLIMEKNESALGRQSAP- 393
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
+K +L EK SSST LA QL N QR VDSVARQNLASAIE HGSGR+SLSE +VD
Sbjct: 394 SKCSASVLLEKHSSSTRLAPQL-NDCSQRLVDSVARQNLASAIE-HGSGRRSLSESLVVD 451
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PN N SL KQF ++EEY+T +KM+KNS DE SF + ++R N++D G Q + G
Sbjct: 452 PNFPPTNTSLRKQFDHDEEYNTDLKMDKNS-DENSFPRAVDHRTNENDHGKQMN-SSGAK 509
Query: 421 NIDEAPLFDYENSNPLVQGIG--------NFHVDNDNVIFPDNDKSGALSGPSSIYQFYE 472
NI E L+ GI N +++DNV F +N KSG+L+ S++Y YE
Sbjct: 510 NI-------TEEQQALLSGIPIQQNLVFENDMLESDNVSFTENIKSGSLT-TSNVYHCYE 561
Query: 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532
SK+A+LIRKNGILEGQLAA+L ++EAAEK+ +SVLKSRQEME+KLA+S KEMEL++EKL
Sbjct: 562 SKLASLIRKNGILEGQLAASLASKEAAEKSLASVLKSRQEMERKLAESHKEMELMREKLT 621
Query: 533 GLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV 592
LELAQEEAN+LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGV+AGERARAFQLQ
Sbjct: 622 SLELAQEEANNLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVIAGERARAFQLQY 681
Query: 593 EVFHLKQRLQSLENRA-PTPRKPFNV 617
EVFHLKQRLQS+ENRA TPRKPF+V
Sbjct: 682 EVFHLKQRLQSMENRASTTPRKPFHV 707
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432819|ref|XP_004134196.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] gi|449529842|ref|XP_004171907.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/619 (72%), Positives = 514/619 (83%), Gaps = 43/619 (6%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
MIVVGGESG+GLLDDVQVLNFD+F+WT ASSKLYLSPSSLPLKIPAC+GHSL+SWGKK L
Sbjct: 101 MIVVGGESGSGLLDDVQVLNFDKFTWTRASSKLYLSPSSLPLKIPACKGHSLVSWGKKAL 160
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
LVGGKT+ G++RV+VW FDTETECWS++EAKGDIPVARSGHTVVRASSVLILFGGED +R
Sbjct: 161 LVGGKTEPGNERVAVWAFDTETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSRR 220
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
+KLNDLHMFDLKS TWLPLHCTGTGPS RSNH+AALYDDK LLIFGG+SKS+TLNDLYSL
Sbjct: 221 KKLNDLHMFDLKSFTWLPLHCTGTGPSARSNHLAALYDDKTLLIFGGTSKSRTLNDLYSL 280
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETM+W+RIK+RGFHPSPRAGCCGVLCGTKW IAGGGSRKKRHA+TLIFDILK EWSVA
Sbjct: 281 DFETMVWSRIKVRGFHPSPRAGCCGVLCGTKWCIAGGGSRKKRHADTLIFDILKLEWSVA 340
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
+TSP SSVT+NKGF+LVLVQHKEKDFL+AFGG KKEPSNQVEVL++EK E S+ RS P
Sbjct: 341 LTSPPSSVTTNKGFSLVLVQHKEKDFLLAFGGSKKEPSNQVEVLTMEKKEPSLRHRSNP- 399
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
+DS ARQNLASAIE HGSGRKS+SE +LVD
Sbjct: 400 ------------------------------IDSTARQNLASAIE-HGSGRKSISETSLVD 428
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PNPI GN+SL KQF N+E + K+ K +ED++S Q TEN+ QS G+
Sbjct: 429 PNPIPGNISLRKQFHNDESFDKTTKIAKTAEDDSSTSQVTENKLTQSG---------GEF 479
Query: 421 NIDEAP-LFDYENSNPLVQGIGNFH-VDNDNVIFPDNDKSGALSGPSSIYQFYESKMAAL 478
+ + P +++YE+SNP +G+G H +DN ++ + K S SSIYQFYE+KMAAL
Sbjct: 480 HGETLPSVYEYESSNPFKEGVGYHHPIDNTDLFSESSGKIVTSSTFSSIYQFYEAKMAAL 539
Query: 479 IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538
IRKNG+LEGQLAAA +REA EKN SS LK RQEMEK++AD +KEME+L++KLAG+E+A+
Sbjct: 540 IRKNGVLEGQLAAATASREAVEKNLSSALKIRQEMEKRIADMIKEMEMLRDKLAGVEIAK 599
Query: 539 EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 598
EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER+RAFQLQVEVFHLK
Sbjct: 600 EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERSRAFQLQVEVFHLK 659
Query: 599 QRLQSLENRAPTPRKPFNV 617
QRLQS+ENRAPTPRKPF++
Sbjct: 660 QRLQSMENRAPTPRKPFHM 678
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478641|ref|XP_003609606.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] gi|355510661|gb|AES91803.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/642 (72%), Positives = 528/642 (82%), Gaps = 33/642 (5%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+IVVGGES GLLDDVQVLNF+ FSWT ASSKLYLSPSSLPLKIPAC+GHSL+S+GKK L
Sbjct: 109 IIVVGGESSTGLLDDVQVLNFETFSWTTASSKLYLSPSSLPLKIPACKGHSLVSYGKKAL 168
Query: 61 LVGGKTDSGSDRVS------------------------VWTFDTETECWSVVEAKGDIPV 96
L+GGKTD GSDR+S VW FDTE+ECWS++EAKGDIPV
Sbjct: 169 LIGGKTDPGSDRISGSIRGLLMYISRCEVALIIFLVFAVWAFDTESECWSLMEAKGDIPV 228
Query: 97 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156
AR+GH+VVRASS LILFGGED KRRKLNDLHMFDLKSLTWLPLH TGT PSPR NHVAAL
Sbjct: 229 ARNGHSVVRASSYLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHYTGTAPSPRLNHVAAL 288
Query: 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 216
YDDK L IFGGSSKSKTLNDLYSLDFETM W+R+K+RGFHPSPRAGCCGVLCGTKWYI G
Sbjct: 289 YDDKVLYIFGGSSKSKTLNDLYSLDFETMAWSRVKVRGFHPSPRAGCCGVLCGTKWYITG 348
Query: 217 GGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 276
GGS+KKRH ETLIFDI+K EWSVAITSP SS+T+NKGF+LVLVQ+KEKD+LVAFGG KKE
Sbjct: 349 GGSKKKRHGETLIFDIVKNEWSVAITSPPSSITTNKGFSLVLVQYKEKDYLVAFGGSKKE 408
Query: 277 PSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVAR 336
PSNQVEVL ++KNES++ RRSTP +KGP +L EK SSST LA QL N QR VDSVAR
Sbjct: 409 PSNQVEVLELDKNESALRRRSTP-SKGPASILLEKHSSSTRLASQL-NHCSQRLVDSVAR 466
Query: 337 QNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSF 396
QNLASA+E HGSGRKSLSE VDPN NVSL KQF +EEY+ VKM+KNS D +S
Sbjct: 467 QNLASAVE-HGSGRKSLSES--VDPNYPPSNVSLRKQFDRDEEYNADVKMDKNS-DGSSL 522
Query: 397 VQTTENRKNQSDLGAQTSICVGKTNIDEAPLFDYENSNPLVQGIGNFHVDNDNVIFPDND 456
Q ++R N++D +I K NI+ L SN Q + ++++ V FP+ND
Sbjct: 523 PQVADHRTNENDRRKLMNISGAKVNIEGQVLLS-GMSNQQNQVFESDALESEVVSFPEND 581
Query: 457 KSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK 516
KSG+LS ++IYQ+YESK+AALIRKNG+LEGQLAA++ +REAAEK SSV KSRQEMEKK
Sbjct: 582 KSGSLSS-TNIYQYYESKVAALIRKNGMLEGQLAASMASREAAEKGLSSVHKSRQEMEKK 640
Query: 517 LADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576
LAD+LKEMELL+EKLAGLELAQEEAN+LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST
Sbjct: 641 LADALKEMELLREKLAGLELAQEEANNLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 700
Query: 577 RGVLAGERARAFQLQVEVFHLKQRLQSLENR-APTPRKPFNV 617
RGV+AGERARAFQLQ EVFHLKQRLQS+ENR + TPRKPF+V
Sbjct: 701 RGVIAGERARAFQLQYEVFHLKQRLQSMENRTSTTPRKPFHV 742
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519992|ref|XP_003528652.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/625 (73%), Positives = 525/625 (84%), Gaps = 15/625 (2%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
MIVVGGESG GLLDDVQVL FDRFSWT ASSKLYLSPSSLPLKIPAC+GHSL+SWGKK L
Sbjct: 93 MIVVGGESGTGLLDDVQVLTFDRFSWTMASSKLYLSPSSLPLKIPACKGHSLVSWGKKAL 152
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
L+GGKTD GSDR+SVW FDTETECWS++EAKGDIPVARSGH+VVRASSVLILFGGED KR
Sbjct: 153 LIGGKTDPGSDRISVWAFDTETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDAKR 212
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
RKLNDLHMFDLKSLTWLPLH TGT PSPR NHVAALYDDK L IFGGSSKS+TLNDLYSL
Sbjct: 213 RKLNDLHMFDLKSLTWLPLHYTGTAPSPRFNHVAALYDDKILYIFGGSSKSRTLNDLYSL 272
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETM W+R+KIRGFHPSPRAGCC VLCGTKWYI GGGSRKKRH ET+IFDI+K EWSVA
Sbjct: 273 DFETMAWSRVKIRGFHPSPRAGCCDVLCGTKWYITGGGSRKKRHGETVIFDIVKNEWSVA 332
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
ITSP SS+T+NKGF++VLVQHKEKDFLVAFGG KKEPSNQVEVL +EKNES++G +S +
Sbjct: 333 ITSPPSSITTNKGFSMVLVQHKEKDFLVAFGGSKKEPSNQVEVLIMEKNESTLGSQSA-H 391
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
+K +L EK SSST LA QL N Q VDSVARQNLASAIE HGSGR+SLSE ++D
Sbjct: 392 SKCSASVLLEKHSSSTRLAPQL-NDCSQHLVDSVARQNLASAIE-HGSGRRSLSESLVID 449
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PN N SL KQF ++EEY+T +KM+KNS DE SF + ++R N+ G Q + KT
Sbjct: 450 PNFPPTNTSLRKQFDHDEEYNTDLKMDKNS-DERSFPRAVDHRTNKDYHGKQMNTSEVKT 508
Query: 421 NIDEAP--LFDYENSNPLVQGIGNFHVDNDNVIFPD----NDKSGALSGPSSIYQFYESK 474
N++E L N LV N ++DN++F + N SG+L+ S++Y +YESK
Sbjct: 509 NMEEQQTLLSGILNQQNLV--FENDMPESDNLLFSENINININSGSLT-TSNVYYYYESK 565
Query: 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 534
+A+LIRKNGILEGQLAA++ ++EAAEK+ +SVLKSRQEM++KL +S KEMEL++EKLAGL
Sbjct: 566 LASLIRKNGILEGQLAASIASKEAAEKSLTSVLKSRQEMDRKLTESEKEMELMREKLAGL 625
Query: 535 ELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEV 594
ELAQEE N+LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGV+AGERARAFQLQ EV
Sbjct: 626 ELAQEETNNLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVIAGERARAFQLQFEV 685
Query: 595 FHLKQRLQSLE-NRA-PTPRKPFNV 617
FHLKQRLQS+E NRA TPRKPF+V
Sbjct: 686 FHLKQRLQSMEKNRASTTPRKPFHV 710
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110584|ref|XP_002315566.1| predicted protein [Populus trichocarpa] gi|222864606|gb|EEF01737.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/617 (72%), Positives = 490/617 (79%), Gaps = 59/617 (9%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
MIVVGG+SG+GLLDDVQVL FD+F+WT SSKLYLSPSSLPLKIPACRGH L+SWGKK L
Sbjct: 105 MIVVGGDSGSGLLDDVQVLKFDQFTWTTISSKLYLSPSSLPLKIPACRGHCLVSWGKKAL 164
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
L+GGKTD SDR+SVW F TETECWS++EAKGDIP+AR GHTVVRASSVLILFGGED KR
Sbjct: 165 LIGGKTDPASDRISVWAFHTETECWSIIEAKGDIPIARCGHTVVRASSVLILFGGEDAKR 224
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
+KLNDLHMFDLKS TWLPLHCTGTGPSPR+NHVAALYDDK LLIFGG+SKS+TLNDLYSL
Sbjct: 225 KKLNDLHMFDLKSFTWLPLHCTGTGPSPRTNHVAALYDDKILLIFGGTSKSRTLNDLYSL 284
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETM+W+R KIRGFHPSPRAGCCGVLCGTKWYIAGGG+RKKRH+ET IFDILK EWSVA
Sbjct: 285 DFETMVWSRTKIRGFHPSPRAGCCGVLCGTKWYIAGGGTRKKRHSETFIFDILKVEWSVA 344
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPN 300
SPSSS+T+NKGF+LVLVQHKEKDFLVAFGG KKEPSNQVEV+ IEKNESSMGR S P
Sbjct: 345 FPSPSSSITTNKGFSLVLVQHKEKDFLVAFGGSKKEPSNQVEVMGIEKNESSMGRHSAP- 403
Query: 301 AKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVD 360
++GP LL EK SSST LA QLG G+ Q SVDS+ RQNL SAIEQHGSGRKSLSE LVD
Sbjct: 404 SEGPRNLLLEKCSSSTVLADQLGTGSSQHSVDSITRQNLVSAIEQHGSGRKSLSESLLVD 463
Query: 361 PNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKT 420
PN SGNVS K F ++EE +TA K KN +
Sbjct: 464 PNSASGNVSRRKDFHHKEENTTAAKTAKNLD----------------------------- 494
Query: 421 NIDEAPLFDYENSNPLVQGIGNFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIR 480
GNF D GA + +Y E+K+AAL R
Sbjct: 495 --------------------GNF------ASLSDCTTGGARASIYRLY---ETKIAALTR 525
Query: 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540
KN +LEGQLAAA + REAAEKN SS LKSRQEMEKKL D+++EMELLKEKLA +ELAQEE
Sbjct: 526 KNRVLEGQLAAAFIGREAAEKNVSSALKSRQEMEKKLVDTVREMELLKEKLACVELAQEE 585
Query: 541 ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR 600
ANSLSNIVHSDN+RLEHDVAFLKAVLDDTQKELHSTRGVL+GERARAFQLQ+EVFHLKQR
Sbjct: 586 ANSLSNIVHSDNLRLEHDVAFLKAVLDDTQKELHSTRGVLSGERARAFQLQIEVFHLKQR 645
Query: 601 LQSLENRAPTPRKPFNV 617
LQS+ENR PTPRKPF+V
Sbjct: 646 LQSMENRTPTPRKPFHV 662
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478643|ref|XP_003609607.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] gi|355510662|gb|AES91804.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/642 (71%), Positives = 521/642 (81%), Gaps = 41/642 (6%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+IVVGGES GLLDDVQVLNF+ FSWT ASSKLYLSPSSLPLKIPAC+GHSL+S+GKK L
Sbjct: 109 IIVVGGESSTGLLDDVQVLNFETFSWTTASSKLYLSPSSLPLKIPACKGHSLVSYGKKAL 168
Query: 61 LVGGKTDSGSDRVS------------------------VWTFDTETECWSVVEAKGDIPV 96
L+GGKTD GSDR+S VW FDTE+ECWS++EAKGDIPV
Sbjct: 169 LIGGKTDPGSDRISGSIRGLLMYISRCEVALIIFLVFAVWAFDTESECWSLMEAKGDIPV 228
Query: 97 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156
AR+GH+VVRASS LILFGGED KRRKLNDLHMFDLKSLTWLPLH TGT PSPR NHVAAL
Sbjct: 229 ARNGHSVVRASSYLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHYTGTAPSPRLNHVAAL 288
Query: 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 216
YDDK L IFGGSSKSKTLNDLYSLDFETM W+R+K+RGFHPSPRAGCCGVLCGTKWYI G
Sbjct: 289 YDDKVLYIFGGSSKSKTLNDLYSLDFETMAWSRVKVRGFHPSPRAGCCGVLCGTKWYITG 348
Query: 217 GGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 276
GGS+KKRH ETLIFDI+K EWSVAITSP SS+T+NKGF+LVLVQ+KEKD+LVAFGG KKE
Sbjct: 349 GGSKKKRHGETLIFDIVKNEWSVAITSPPSSITTNKGFSLVLVQYKEKDYLVAFGGSKKE 408
Query: 277 PSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVAR 336
PSNQVEVL ++KNES++ RRSTP +KGP +L EK SSST LA QL N QR VDSVAR
Sbjct: 409 PSNQVEVLELDKNESALRRRSTP-SKGPASILLEKHSSSTRLASQL-NHCSQRLVDSVAR 466
Query: 337 QNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSF 396
QNLASA+E HGSGRKSLSE VDPN NVSL KQF +EEY+ VKM+KNS D +S
Sbjct: 467 QNLASAVE-HGSGRKSLSES--VDPNYPPSNVSLRKQFDRDEEYNADVKMDKNS-DGSSL 522
Query: 397 VQTTENRKNQSDLGAQTSICVGKTNIDEAPLFDYENSNPLVQGIGNFHVDNDNVIFPDND 456
Q ++R N++D +I K NI+ L SN Q + ++++ V FP+ND
Sbjct: 523 PQVADHRTNENDRRKLMNISGAKVNIEGQVLLS-GMSNQQNQVFESDALESEVVSFPEND 581
Query: 457 KSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK 516
KSG+LS ++IYQ+YESK+AALIRKNG+LEGQLAA++ +REAAEK SSV KSRQEMEKK
Sbjct: 582 KSGSLSS-TNIYQYYESKVAALIRKNGMLEGQLAASMASREAAEKGLSSVHKSRQEMEKK 640
Query: 517 LADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576
LAD+LKEMELL+EKLAGLELAQEEAN+LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST
Sbjct: 641 LADALKEMELLREKLAGLELAQEEANNLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 700
Query: 577 RGVLAGERARAFQLQVEVFHLKQRLQSLENR-APTPRKPFNV 617
RGV+AGERARAFQL QRLQS+ENR + TPRKPF+V
Sbjct: 701 RGVIAGERARAFQL--------QRLQSMENRTSTTPRKPFHV 734
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 617 | ||||||
| TAIR|locus:2183008 | 708 | AT5G18590 [Arabidopsis thalian | 0.987 | 0.860 | 0.638 | 1.7e-201 | |
| TAIR|locus:2184352 | 514 | AT5G04420 [Arabidopsis thalian | 0.473 | 0.568 | 0.338 | 6.1e-52 | |
| TAIR|locus:2143676 | 648 | ACBP5 "acyl-CoA binding protei | 0.653 | 0.621 | 0.301 | 1.9e-51 | |
| DICTYBASE|DDB_G0270750 | 485 | DDB_G0270750 "Kelch repeat-con | 0.366 | 0.465 | 0.312 | 7.7e-22 | |
| TAIR|locus:2077502 | 329 | AT3G07720 "AT3G07720" [Arabido | 0.351 | 0.659 | 0.303 | 6e-20 | |
| UNIPROTKB|Q5EA50 | 372 | RABEPK "Rab9 effector protein | 0.337 | 0.559 | 0.295 | 1.3e-17 | |
| MGI|MGI:2139530 | 380 | Rabepk "Rab9 effector protein | 0.337 | 0.547 | 0.3 | 4.4e-17 | |
| UNIPROTKB|F1SKQ3 | 370 | RABEPK "Uncharacterized protei | 0.337 | 0.562 | 0.290 | 4.9e-17 | |
| POMBASE|SPCC1223.06 | 1147 | tea1 "cell end marker Tea1" [S | 0.717 | 0.386 | 0.239 | 4.9e-17 | |
| WB|WBGene00001827 | 782 | hcf-1 [Caenorhabditis elegans | 0.353 | 0.278 | 0.290 | 1.6e-16 |
| TAIR|locus:2183008 AT5G18590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1950 (691.5 bits), Expect = 1.7e-201, P = 1.7e-201
Identities = 400/626 (63%), Positives = 471/626 (75%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVL 60
MIVVGGESG+GLLDDVQVLNFD +W+ A IPA +GH L+SWGKKVL
Sbjct: 91 MIVVGGESGSGLLDDVQVLNFDSCTWSTASSKVYLSPSSLPLMIPAWKGHCLVSWGKKVL 150
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120
LVGGKTD SDRVSVW FDT++ECWS+++AKGD+PV+RSGHTVVRASSVLILFGGED K+
Sbjct: 151 LVGGKTDPSSDRVSVWAFDTDSECWSLMDAKGDLPVSRSGHTVVRASSVLILFGGEDSKK 210
Query: 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180
RKLNDLHMFDLKS TWLPL+CTGT P RS+HVA L+DDK L +FGGS K+KTLNDLYSL
Sbjct: 211 RKLNDLHMFDLKSSTWLPLNCTGTRPCARSHHVATLFDDKILFVFGGSGKNKTLNDLYSL 270
Query: 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240
DFETM+W+RIKIRGFHPSPRAG CGVLCGTKWYI GGGSRKKRHAETL+FDILK EWSVA
Sbjct: 271 DFETMVWSRIKIRGFHPSPRAGSCGVLCGTKWYITGGGSRKKRHAETLVFDILKVEWSVA 330
Query: 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES-SMGRRSTP 299
S SSVTSNKGF+LVL+QHK+KDFLVAFGG KK+PSNQV+ +I+KN+S S T
Sbjct: 331 SISSQSSVTSNKGFSLVLLQHKDKDFLVAFGGTKKDPSNQVDAFTIDKNKSESPTHPQTT 390
Query: 300 NAKGPGQLLFEKRSSSTGLAC--QLGNGAPQRSVDSVARQNLASAIEQHG-SGRKSLSEF 356
+ K PG+LLF KRSSS+ + + + QR +DSVARQ LASAIE+HG SGR+SLSE
Sbjct: 391 SKKNPGRLLFGKRSSSSAVLTSDESVKASSQRLIDSVARQKLASAIEEHGGSGRRSLSEI 450
Query: 357 ALVDP-NPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQ-TTENRKNQSDLGAQTS 414
A D NP SGNVSL KQF EEEY ++ K SE++ S TT++ + + A+ +
Sbjct: 451 AFGDHRNPPSGNVSLRKQFSTEEEYRAVIEPAKCSEEDISVPPPTTDDNTGGAKITAEKT 510
Query: 415 ICVGKTNIDEAPLFDYENSNPLVQGIGNFHVDNDNVIFPDNDK---SGALSGPSSIYQFY 471
+ + + + + + + N VD +IF + D +G+ S SS+YQF+
Sbjct: 511 LSM----VSDREILSLQKQCSETYPLEN--VDGA-LIFQEMDNINFAGSASS-SSVYQFH 562
Query: 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSXXXXXXXXXXX 531
E+KM ALIR+NGILEGQL AAL REAAE+N S L+S+QE +KKL+D+
Sbjct: 563 EAKMTALIRRNGILEGQLEAALAGREAAERNVSVALRSKQETDKKLSDAMRDVELLKEKL 622
Query: 532 XXXXXXXXXXNSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQ 591
NSLSN+VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQ
Sbjct: 623 TGLELAQEEANSLSNMVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQ 682
Query: 592 VEVFHLKQRLQSLENRAPTPRKPFNV 617
VEVFHLKQRLQSLENRA TPRKPF+V
Sbjct: 683 VEVFHLKQRLQSLENRAATPRKPFHV 708
|
|
| TAIR|locus:2184352 AT5G04420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 102/301 (33%), Positives = 158/301 (52%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTA---------AXXXXXXXXXXXXXXIPACRGHS 51
+ +VGG L DVQV + +W++ A PA H
Sbjct: 47 LYIVGGSRNGRYLSDVQVFDLRSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHR 106
Query: 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLI 111
+I WG K+LL+GG + SD + V D ET V++ G++P +R GH++ S ++
Sbjct: 107 MIKWGNKLLLIGGHSKKSSDNMLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVL 166
Query: 112 LFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 171
+FGGED RR LNDLH+ L+++TW + T P PR +H AA + D+ LLIFGG S S
Sbjct: 167 VFGGEDKNRRLLNDLHVLHLETMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHS 226
Query: 172 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 231
+DL+ LD +TM W++ ++G +PRAG G+ WYI GGG ETL+ +
Sbjct: 227 IFYSDLHILDLQTMEWSQPHVQGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLN 286
Query: 232 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291
+ K WS + + +++G ++ ++ LVAFGG + +N + V+ ++ ES
Sbjct: 287 MSKLVWSTSTHVEARHPLASEGLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGES 346
Query: 292 S 292
S
Sbjct: 347 S 347
|
|
| TAIR|locus:2143676 ACBP5 "acyl-CoA binding protein 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 127/421 (30%), Positives = 213/421 (50%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXX--XIPACRGHSLISWGKK 58
M + GG L D+ VL+ ++W+ + C GHSLI W +
Sbjct: 197 MYMYGGNHNGRYLGDLHVLDLKNWTWSRVETKVVTGSQETSSPAKLTHCAGHSLIPWDNQ 256
Query: 59 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG 118
+L +GG T S+ + V FD WS+++ G P++R G +V L++FGG+D
Sbjct: 257 LLSIGGHTKDPSESMPVMVFDLHCCSWSILKTYGKPPISRGGQSVTLVGKSLVIFGGQDA 316
Query: 119 KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178
KR LNDLH+ DL ++TW + G+ P+PRS+H AA++ ++ LLIFGG S + +DL+
Sbjct: 317 KRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSDHAAAVHAERYLLIFGGGSHATCFDDLH 376
Query: 179 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238
LD +TM W+R +G P+PRAG GV G WYI GGG K ++T++ ++ WS
Sbjct: 377 VLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGENWYIVGGGDNKSGASKTVVLNMSTLAWS 436
Query: 239 VAITSPSSSVT-SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRS 297
V +TS V +++G +LV+ + +D +VAFGG +N+V VL ++SS+ +
Sbjct: 437 V-VTSVQEHVPLASEGLSLVVSSYNGEDIVVAFGGYNGHYNNEVNVLK-PSHKSSLKSKI 494
Query: 298 TPNAKGPGQLLFEKRSSSTGLACQLG-NGAPQRSVDSVA--RQNLASAIEQHGSGRKSLS 354
+ P +++ + ++ G R + ++ ++ + +++ + L
Sbjct: 495 MGASAVPDSFSAVNNATTRDIESEIKVEGKADRIITTLKSEKEEVEASLNKEKIQTLQLK 554
Query: 355 E-FALVDPNPISGNVSLGKQFQ---NE--EEYSTAVKMEKNSEDETSFVQTTENRKNQSD 408
E A +D N L K+ Q N+ E S K+E + +QT E + + +
Sbjct: 555 EELAEIDTR----NTELYKELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELE 610
Query: 409 L 409
L
Sbjct: 611 L 611
|
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| DICTYBASE|DDB_G0270750 DDB_G0270750 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 75/240 (31%), Positives = 115/240 (47%)
Query: 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS 108
GH+ + KV+L GG D ++ +T W ++ KG+ P R H+ +
Sbjct: 121 GHTTCLYKNKVILFGGTPDGSHGLSDLYFLYLDTYSWVEIKTKGNAPNGRYRHSAIIIED 180
Query: 109 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 168
+ +FGG K LNDLH+ DL++ TW C G PS RS+H K +++FGGS
Sbjct: 181 KMYIFGGYRSKC--LNDLHVLDLETFTWSEPICIGEAPSARSSHSVCCVG-KMMILFGGS 237
Query: 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAE 226
++ N+L+SLD TM WT+ + G PS R C +C G K GG + K++ +
Sbjct: 238 G-ARYSNELFSLDTVTMRWTKHDVLGTPPSER--WCHTMCSFGKKVVTFGGSNDKRKDNK 294
Query: 227 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQVEVLS 285
I D EWS TS + + T V + ++ FGG K + N + +L+
Sbjct: 295 VYILDTDTMEWSQPPTSGNCPIPRQL-HTAVAIGES----MIVFGGWGKHQELNDLYILN 349
|
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| TAIR|locus:2077502 AT3G07720 "AT3G07720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 6.0e-20, P = 6.0e-20
Identities = 75/247 (30%), Positives = 111/247 (44%)
Query: 45 PACRG-HSLISWGKKVLLVGGKTDSGSDRVSV----WTFDTETECWSVVEAKGDIPVARS 99
P R H++ G K+ GG+ RV V + FD ET+ WS+ EA GD P R
Sbjct: 20 PGARSSHAIALVGNKMYAFGGEFQP---RVPVDNQLYVFDLETQTWSIQEASGDAPPPRV 76
Query: 100 GHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159
G + ++ FGG D ++LN+L+ F+ + W L TGP RS H + D
Sbjct: 77 GVAMAAVGPIIYFFGGRDSTHQELNELYCFNTLTNQWKLLSSGETGPQNRSYH-SITADS 135
Query: 160 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG-------VLCGTKW 212
+N+ +FGG LNDL++ + W IK PSP C G V+ G W
Sbjct: 136 QNVYVFGGCGVDGRLNDLWAYNVVDQKW--IKF----PSPGEACRGRGGPGLEVVQGKIW 189
Query: 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 272
+ G + FDI KGEW + + ++ F+ +V K L++ G
Sbjct: 190 VVYGFAGEEADDVHC--FDIAKGEWK-EVETKGEKPSARSVFSTAVVG---KQILISGGE 243
Query: 273 IKKEPSN 279
I +PS+
Sbjct: 244 I--DPSD 248
|
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| UNIPROTKB|Q5EA50 RABEPK "Rab9 effector protein with kelch motifs" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 65/220 (29%), Positives = 93/220 (42%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVL 60
+ +VGG N DV ++ W A IP+C HS+ W
Sbjct: 50 VFIVGGADPNRSFSDVHTIDLGTHQWDLATSEGLLPRYEHTSFIPSCTPHSI--W----- 102
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGK 119
+ GG SG+ R + + +T W+ E G P R+ HT A L +FGG +
Sbjct: 103 VFGGADQSGN-RNCLQVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERG 161
Query: 120 RRKLND--LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 177
+ + D LH+FD +LTW G PSPR HV K L I GG + +DL
Sbjct: 162 AQPVQDVQLHVFDANTLTWSQPETHGKPPSPRHGHVMVAAGTK-LFIHGGLAGDNFYDDL 220
Query: 178 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 217
+ +D M W +++ G P+ A V G Y+ GG
Sbjct: 221 HCIDISDMKWQKLRPTGAAPTGCAAHSAVAVGKHLYVFGG 260
|
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| MGI|MGI:2139530 Rabepk "Rab9 effector protein with kelch motifs" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 66/220 (30%), Positives = 93/220 (42%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVL 60
+ +VGG + N DV ++ W A +P+C HS+ W
Sbjct: 58 IFIVGGANPNQSFSDVHTMDLGTHQWDTATREGLLPRYEHASFLPSCSPHSI--W----- 110
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGK 119
+ GG SG+ R + E WS E G P R+ HT A + L +FGG +
Sbjct: 111 VFGGADQSGN-RNCLQVMSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERG 169
Query: 120 RRKLND--LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 177
+ + D LH+FD +LTW G+ PSPR HV K L I GG + K +DL
Sbjct: 170 AQPVEDVKLHVFDANTLTWSQPETHGSPPSPRHGHVMVAAGTK-LFIHGGLAGDKFFDDL 228
Query: 178 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 217
+ +D M W ++ G P A V G Y+ GG
Sbjct: 229 HCIDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGG 268
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| UNIPROTKB|F1SKQ3 RABEPK "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 234 (87.4 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 64/220 (29%), Positives = 93/220 (42%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVL 60
+ +VGG + N DV ++ W +P+C HS+ W
Sbjct: 50 VFIVGGANPNRSFSDVHTMDLGTHQWDLTTSEGLLPRYEHASFVPSCAPHSI--W----- 102
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGK 119
+ GG SG+ R + + ET W++ E P R+ HT + L +FGG +
Sbjct: 103 VFGGADQSGN-RNCLQVLNPETRTWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERG 161
Query: 120 RRKLND--LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 177
+ + D LH+FD +LTW G PSPR HV K L I GG + K +DL
Sbjct: 162 AQPVQDVKLHVFDANTLTWSQPETLGEPPSPRHGHVMVAAGTK-LFIHGGLAGDKFYDDL 220
Query: 178 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 217
+ +D M W ++ G P+ A V G YI GG
Sbjct: 221 HCIDINDMKWQKLSPTGAAPTGCAAHSAVTVGKHVYIFGG 260
|
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| POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 119/496 (23%), Positives = 202/496 (40%)
Query: 45 PACR-GHSLISWGKKVLLVGGKTDSG-SDRV--SVWTFDTETECWSVVEAKGDIPVARSG 100
P+ R GH+ I G ++ GG T+ +DR S++ +T + W A G P R G
Sbjct: 131 PSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYG 190
Query: 101 HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-----WLPLHCTGTGPSPRSNHVAA 155
HT+ S + LFGG NDL FDL +L W P R+ HVA
Sbjct: 191 HTISCLGSKICLFGGRL-LDYYFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAF 249
Query: 156 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIA 215
+ DK L IFGG+ + NDL+ + W++++ G P+PRAG + Y+
Sbjct: 250 TFSDK-LYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVF 308
Query: 216 GGGSRKKRHAETLI-FDILKGEW----SVAIT-SPSSSVT-SNKGFTLVLVQHKEKDFLV 268
GG + L F + W + T SP SS T S G TLVL+
Sbjct: 309 GGRASDGTFLNDLYAFRLSSKHWYKLSDLPFTPSPRSSHTLSCSGLTLVLI--------- 359
Query: 269 AFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLG----- 323
GG + + ++ V ++ + +G T + + F + +T + G
Sbjct: 360 --GGKQGKGASDSNVYMLDTSRFRLGSVPTTSGRQRNTSFFSNSTGNTNPSAFNGLLTSS 417
Query: 324 -----NGAPQRSVDSVARQN-LASAIEQHGSGRKSLSEFALVDPNPISGNVS--LGKQFQ 375
NG+ RS +RQ + S+ + + +++S P+SG S L
Sbjct: 418 RIPSYNGSKVRSTSHPSRQQYIGSSNSRFNTRHQTIS-------TPVSGRASNDLPSPVV 470
Query: 376 NEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAPLFDY-ENSN 434
S+++ + + S + N +QS L +Q K + +P + +S+
Sbjct: 471 PTRSNSSSILQPSYNLNSHSSDRRNTNDDDQSSLNSQQLSNQAKAQGEVSPTLSFVPSSH 530
Query: 435 PLVQGIGNFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALV 494
+ QG G+ N+ ++S S + +F E + + L+G++ + V
Sbjct: 531 SMEQGNGSVASANNAQSEAATRSINSISEVSEV-RFPEQSSVKTVDERKSLDGRITS--V 587
Query: 495 NREAAEKNFSSVLKSR 510
E + +S + K +
Sbjct: 588 TLETLVEKYSELSKQQ 603
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| WB|WBGene00001827 hcf-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 73/251 (29%), Positives = 111/251 (44%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVL 60
+IV+ G G++D++ N + WTA PA IS G K+
Sbjct: 55 LIVIFGGGNEGMIDELHAYNTQKREWTAPQCCGDVPT-------PAA-AFGAISLGNKIY 106
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSV----VEAKGDIPVARSGHTVV--RASSVLILFG 114
GG T+ G ++ + W V + G +P R GH+ V + S +FG
Sbjct: 107 RFGGMTEYGKYTNDLYELQSTRWEWRRLNPRVHSNGHLPCPRIGHSFVVSQKSQKAYVFG 166
Query: 115 G-----EDGKRRK---LNDLHMFDLKS---LTWLPLHCTGTGPSPRSNHVAALYDDKNL- 162
G D KR L+DL++ +L L W L+ TG GP R +H A +Y+ ++
Sbjct: 167 GLSNDLNDPKRNVPHYLDDLYVINLSGPQHLIWEKLNATGPGPISRESHTAVIYEKDSIS 226
Query: 163 --LIFGGSSKSKTLNDLYSLDFETMIWTRIKI----RGFHPSPRAGCCGVLCGTKWYIAG 216
+++GG + + L DL+ L+ T+ WT IK G P PR+ VL G K ++ G
Sbjct: 227 RMVVYGGMNGVR-LGDLWYLNLNTLHWTEIKFDDPRTGIPPMPRSLHSSVLIGDKMFVYG 285
Query: 217 GGSRKKRHAET 227
G HA T
Sbjct: 286 GWVPLLEHAST 296
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019805001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (707 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 617 | |||
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 1e-13 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 1e-10 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 2e-09 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 1e-08 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 3e-08 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 3e-08 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 2e-07 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 1e-05 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 6e-05 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 1e-04 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-04 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 3e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 3e-04 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 8e-04 | |
| pfam01576 | 859 | pfam01576, Myosin_tail_1, Myosin tail | 8e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 8e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.001 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.003 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 0.003 | |
| COG3055 | 381 | COG3055, COG3055, Uncharacterized protein conserve | 0.004 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 1e-13
Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 50 HSLISWGKKVLLVGGK-TDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRAS 107
H + G K+ GG+ T + ++ FD ET WS+ A GD+P ++ G +V
Sbjct: 169 HGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG 228
Query: 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 167
S L +FGG D R+ N + FD + W L GP+PRS H A D++N+ +FGG
Sbjct: 229 STLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGG 286
Query: 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-CGVLCGTKWYIAG 216
S + L L S + W G S R G V+ G W + G
Sbjct: 287 VSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336
|
Length = 470 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 2/179 (1%)
Query: 85 WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLND-LHMFDLKSLTWLPLHCTG 143
W VE KG+ P R H + + + + FGGE + ++ L++FDL++ TW TG
Sbjct: 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG 212
Query: 144 TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203
P V + L +FGG S+ N YS D T W + P+PR+
Sbjct: 213 DVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272
Query: 204 CGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHK 262
Y+ GG S R ++I+ +W ++P S + G L +VQ K
Sbjct: 273 SMAADEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGGAGLEVVQGK 330
|
Length = 470 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 143 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL--NDLYSLDFETMIWTRIKIRGFHPSPR 200
G GP PR +H A+ DK L FGG K DLY DF T W+ G PR
Sbjct: 17 GKGPGPRCSHGIAVVGDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG--DVPR 73
Query: 201 AGCCG---VLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238
C G V GTK YI GG K+ ++ +D +K EW+
Sbjct: 74 ISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114
|
Length = 341 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-08
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 110 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157
+ +FGG +LNDL ++DL + TW L G P PR+ H A +
Sbjct: 4 IYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 65/249 (26%), Positives = 101/249 (40%), Gaps = 32/249 (12%)
Query: 45 PACRGHSLISWGKKVLLVGG--KTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGH 101
P C H + G K+ GG K + D+ ++ FD T WS+ A GD+P ++ G
Sbjct: 22 PRC-SHGIAVVGDKLYSFGGELKPNEHIDK-DLYVFDFNTHTWSIAPANGDVPRISCLGV 79
Query: 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW---LPLHCTGTGPSPRSNHVAALYD 158
+V + L +FGG D K R+ +D + +D W L G GP R+ H A D
Sbjct: 80 RMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEG-GPEARTFHSMA-SD 136
Query: 159 DKNLLIFGGSSKSKTLN------DLYSLDFETMIWTRIKIRGFHPSPRAGC-CGVLCGTK 211
+ ++ +FGG SK + + + + W ++ G + R G V+ G
Sbjct: 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196
Query: 212 WYIAG-------GGSRKKRHAETLIFDILKGEWS-VAITSPSSSVTSNKGFTLVLVQHKE 263
W + G GG FD G+W+ V T S S V
Sbjct: 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS------VFAHAVV 250
Query: 264 KDFLVAFGG 272
+++ FGG
Sbjct: 251 GKYIIIFGG 259
|
Length = 341 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 148 PRSNHVAALYDDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRI 190
PR+ H + D L +FGG + L+D++ D T WTR+
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-07
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 97 ARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 140
R+ HT L LFGGE+ L+D+ +FDL + TW L
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLP 45
|
Length = 49 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 46/236 (19%), Positives = 78/236 (33%), Gaps = 25/236 (10%)
Query: 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS-DR 72
+ V + SW +P I + + + ++ ++GG +S S +
Sbjct: 311 NSVVSYDTKTKSWN-----------KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNT 359
Query: 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132
V W E E P R VV ++++ + GG L + F L
Sbjct: 360 VESWKP---GESKWREEPPLIFP--RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN 414
Query: 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS--SKSKTLNDLYSLDFETMIWTRI 190
+ W P A +D K +I G S K N + S + T WT +
Sbjct: 415 TNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL 471
Query: 191 KIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246
F + C + K Y+ GG + E ++D W++ P
Sbjct: 472 SSLNFPRINASLC---IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKV 524
|
Length = 534 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-05
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 104
G K+ + GG D G+ +W +D +T W + GD+P R+GH
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAAT 46
|
Length = 48 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 148 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 190
PRS + K + + GG ++L+ + D ET W+++
Sbjct: 1 PRSGAGVVVLGGK-IYVIGGYDGGQSLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-------SLKEM 524
E K+ L K LE LA E E+ + K +E+ ++++ E+
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
Query: 525 ELLKEKLAGLELAQEEANSLSNIVHSDN-------VRLEHDVAFLKAVLDDTQKELHSTR 577
E L+E++A L E + + E ++ L+A ++ ++EL + R
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
Query: 578 GVLAGERARAFQLQVEVFHLKQRLQSLENRA 608
L RA L E +L++RL+SLE R
Sbjct: 803 EALDELRAELTLLNEEAANLRERLESLERRI 833
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 6e-05
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 94 IPVARSGHTVVRASSVLILFGGEDGKRRK-LNDLHMFDLKS 133
+PV R+ H V + L+GG + +D+++ L
Sbjct: 1 LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 65/247 (26%)
Query: 35 LSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94
+SP++ + +C G ++S G + + GG+ D+ ++FDT T W ++ +
Sbjct: 207 ISPATGDVPHLSCLGVRMVSIGSTLYVFGGR-DASRQYNGFYSFDTTTNEWKLLTPVEEG 265
Query: 95 PVARSGHTVVRASSVLILFGGEDGKRR--------------------------------- 121
P RS H++ + +FGG R
Sbjct: 266 PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325
Query: 122 ---------------KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFG 166
+++D+H +D W + G PS RS +A K+++IFG
Sbjct: 326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV-GKHIVIFG 384
Query: 167 GS---------SKSKTLNDLYSLDFETMIWTRIKIRGFH---PSPR---AGCCGVLCGTK 211
G + + ++LD ET+ W R+ G PS R A G + G K
Sbjct: 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKK 444
Query: 212 WYIAGGG 218
+ GG
Sbjct: 445 GLVMHGG 451
|
Length = 470 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 30/249 (12%)
Query: 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG 115
+ +GG + SV ++DT+T+ W+ V ++ R V ++ + + GG
Sbjct: 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGG 350
Query: 116 EDGKRRKLNDLHMFDLKSLTW---LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172
LN + + W PL PR N ++ + + GG SK+
Sbjct: 351 IYNSI-SLNTVESWKPGESKWREEPPLI------FPRYNPCVVNVNN-LIYVIGGISKND 402
Query: 173 T-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS---RKKRHAETL 228
L + T W P G C + K Y+ GG S K +
Sbjct: 403 ELLKTVECFSLNTNKW---SKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459
Query: 229 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIE 287
++ + +W+ SS+ + + + + + + GG K E N++EV +
Sbjct: 460 SYNPVTNKWTEL-----SSLNFPRINASLCIFN---NKIYVVGGDKYEYYINEIEVYDDK 511
Query: 288 KNESSMGRR 296
N ++ +
Sbjct: 512 TNTWTLFCK 520
|
Length = 534 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS--GHTVVRASSVLILFGGED 117
+L GGK+D S+ V FD + W+ VE G P ARS H VV +I+FGGE
Sbjct: 206 ILPGGKSDYESNAVQF--FDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEV 261
Query: 118 --------GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALYDDKNLLIFG 166
G N+ + D ++L W L G PR + A +Y LL+ G
Sbjct: 262 WPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321
Query: 167 GS-SKSKTLNDLY 178
G ++ +DLY
Sbjct: 322 GKLPTNERTDDLY 334
|
Length = 341 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 3e-04
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 159 DKNLLIFGGSSKSKT-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 208
+ +FGG T LNDL+ D +T W ++ P PRAG +
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDL---PGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 146 PSPRSNHVAALYDDKNLLIFGG--SSKSKTLNDLYSLDFET 184
P PR+NH A + + ++GG S ++ +D+Y L
Sbjct: 2 PVPRANHCAVVVGG-EIYLYGGYTSGNGQSSDDVYVLSLPG 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 485 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ------ 538
L+ Q+ RE A + E++ E+E L+ L E A+
Sbjct: 586 LQTQVEEEQRAREDAREQL-------AVAERRATALEAELEELRSALEQAERARKQAETE 638
Query: 539 -EEANSLSNIVHSDNV-------RLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQL 590
EA+ N + + N +LE ++A L++ LD+ EL A ERA+ Q
Sbjct: 639 LAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELK-----AAEERAKKAQA 693
Query: 591 QVE 593
Sbjct: 694 DAA 696
|
The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 8e-04
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 98
GHS +S G K+ + GG ++ V +D ET W + +P R
Sbjct: 4 GHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKL---PPLPTPR 50
|
Length = 50 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 27/128 (21%), Positives = 61/128 (47%)
Query: 480 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 539
R+ L+ +LAA E + + + +E+E++L + + +E L+E+L LE A
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 540 EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQ 599
+ + L+ ++ L+ L++ ++ L + L R +L+ E+ L++
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835
Query: 600 RLQSLENR 607
++ LE +
Sbjct: 836 EIEELEEK 843
|
Length = 1163 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.001
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 47 CRGHSLISWGKKVLLVGGKTDSGSDRVS-VWTFDTETECWSVVEAKG 92
H+ + G K+ +VGG T G S +W D ET W+ + A
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.003
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 148 PRSNHVAALYDDKNLLIFGGSS--KSKTLNDLYSLDFETMIWTRIK 191
PR H + + K L + GGS+ + +DL+ LD ET +WT +
Sbjct: 1 PRYPHASVVVGGK-LYVVGGSTGLGDLSSSDLWVLDPETNVWTELP 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 7/166 (4%)
Query: 75 VWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-S 133
++T D E V+A G +P A + + + + GG + + ++ L S
Sbjct: 41 IYTLDDEDSNLKWVKA-GQLPYAAAYGASISTENGIYYIGGSNSSES-FSSVYRITLDES 98
Query: 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 193
L + + P N A D K L + GG++ K N Y + ET W ++
Sbjct: 99 KEALIIETLPSLPFAMDNGSATYKDGK-LYVGGGNANGKPSNKFYCFNLETQEWE--ELP 155
Query: 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239
F +PR V + Y+ GGG + + + G W
Sbjct: 156 DFPGAPRVQPVCVKLQNELYVFGGGD-NIAYTDGYKYSPKTGTWEK 200
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 35/217 (16%), Positives = 62/217 (28%), Gaps = 42/217 (19%)
Query: 97 ARSGHTVVRASSVLILFGG----EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN- 151
AR+ L +FGG + ND + +D + +W L SP
Sbjct: 82 ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR----SPTGLV 137
Query: 152 -HVAALYDDKNLLIFGGSSKS---KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207
+ + FGG +++ D+ + + +I F
Sbjct: 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED------ 191
Query: 208 CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP----SSSVTSNKGFTLVLVQHKE 263
+ + E L +D +W +P + S KG L L+ +
Sbjct: 192 --YFF-----------NKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEI 238
Query: 264 KDFL------VAFGGIKKEPSNQVEVLSIEKNESSMG 294
K L A G ++ L + G
Sbjct: 239 KPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEG 275
|
Length = 381 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 617 | |||
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.98 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.98 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.98 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.97 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.97 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.96 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.96 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.95 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 99.84 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.65 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.57 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.55 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.42 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.95 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.95 | |
| PLN02772 | 398 | guanylate kinase | 98.82 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.75 | |
| PLN02772 | 398 | guanylate kinase | 98.74 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.68 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.67 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.65 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.58 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.54 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.52 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.51 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.39 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.33 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.27 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.27 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.22 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.18 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.16 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.91 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.69 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.13 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.01 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.9 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.76 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.49 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.43 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.42 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.39 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 96.39 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.35 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 96.32 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 96.27 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 96.23 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.19 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.75 | |
| PTZ00421 | 493 | coronin; Provisional | 95.45 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.31 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.0 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 95.0 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.8 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 94.71 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.66 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 94.62 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 94.56 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 94.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.52 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 94.28 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.21 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.11 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 94.11 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 93.96 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 93.91 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 93.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 93.7 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 93.57 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.56 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.56 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 93.48 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 93.21 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 93.1 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 93.04 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 92.91 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 92.47 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 92.47 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 92.38 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.31 | |
| PF13094 | 160 | CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub | 92.22 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 92.09 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 91.88 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.77 | |
| KOG3215 | 222 | consensus Uncharacterized conserved protein [Funct | 91.75 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 91.7 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 91.66 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 91.58 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 91.51 | |
| PRK11637 | 428 | AmiB activator; Provisional | 91.12 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 91.07 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 91.02 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 90.92 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 90.83 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 90.32 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 90.27 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 90.14 | |
| PRK11637 | 428 | AmiB activator; Provisional | 89.68 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 89.53 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.39 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 89.29 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.27 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 88.99 | |
| PF15188 | 85 | CCDC-167: Coiled-coil domain-containing protein 16 | 88.96 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 88.79 | |
| PF12329 | 74 | TMF_DNA_bd: TATA element modulatory factor 1 DNA b | 88.25 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 88.04 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 87.95 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 87.62 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 87.5 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 87.46 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 87.46 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 87.15 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.12 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 87.11 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 86.64 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 86.3 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 86.28 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 85.97 | |
| PRK09039 | 343 | hypothetical protein; Validated | 85.97 | |
| PF08581 | 79 | Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t | 85.85 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 85.83 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 85.5 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 85.44 | |
| PTZ00421 | 493 | coronin; Provisional | 85.41 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 85.05 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 84.92 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 84.91 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 84.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 84.59 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 84.44 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 84.39 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 83.89 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 83.29 | |
| KOG0993 | 542 | consensus Rab5 GTPase effector Rabaptin-5 [Intrace | 83.23 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 82.88 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 82.79 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 82.73 | |
| PF05529 | 192 | Bap31: B-cell receptor-associated protein 31-like | 82.59 | |
| PRK10929 | 1109 | putative mechanosensitive channel protein; Provisi | 82.13 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 82.08 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 81.94 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 81.88 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 81.84 | |
| KOG3478 | 120 | consensus Prefoldin subunit 6, KE2 family [Posttra | 81.68 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 81.65 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 81.62 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 81.22 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 81.2 | |
| PRK13169 | 110 | DNA replication intiation control protein YabA; Re | 81.2 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 81.08 | |
| PRK10115 | 686 | protease 2; Provisional | 80.89 | |
| PF11365 | 96 | DUF3166: Protein of unknown function (DUF3166); In | 80.67 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 80.31 | |
| PF09304 | 107 | Cortex-I_coil: Cortexillin I, coiled coil; InterPr | 80.29 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 80.27 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 80.26 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 80.25 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 80.06 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 80.05 |
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=330.67 Aligned_cols=311 Identities=22% Similarity=0.361 Sum_probs=263.0
Q ss_pred CCcccceEEEEECCEEEEEcccCCCCC----CceEEEEEECCCCcEEEeecc----------CCCCCCcceeEEEEECCE
Q 007111 44 IPACRGHSLISWGKKVLLVGGKTDSGS----DRVSVWTFDTETECWSVVEAK----------GDIPVARSGHTVVRASSV 109 (617)
Q Consensus 44 ~p~r~~hs~v~~g~~lyV~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~~----------g~~P~~R~~~s~~~~~~~ 109 (617)
.|+|.+|+++.+|.+||-|||+..+.. ...+|.++|..+-+|.++++. .-.|..|++|+++.++++
T Consensus 11 GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 11 GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 578899999999999999999965432 345899999999999999862 125678999999999999
Q ss_pred EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC--CCCCCCeEEEEECCCCcE
Q 007111 110 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS--KSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 110 IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~--~~~~~n~v~~yD~~t~~W 187 (617)
+|++||++......|.+|.|||++++|.+....|-+|.+|.+|++|++++. +|||||+. ...+.++++.+|+.|++|
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~-MyiFGGye~~a~~FS~d~h~ld~~TmtW 169 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ-MYIFGGYEEDAQRFSQDTHVLDFATMTW 169 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcE-EEEecChHHHHHhhhccceeEeccceee
Confidence 999999999777899999999999999999999999999999999999999 99999995 357789999999999999
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---------ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEE
Q 007111 188 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVL 258 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~ 258 (617)
+.+...+.+|.-|.+|+++++++.+|||||..+.. +-+++..+|+.+..|...+. ..-.|.+|.+||+.+
T Consensus 170 r~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~-~~~~P~GRRSHS~fv 248 (392)
T KOG4693|consen 170 REMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE-NTMKPGGRRSHSTFV 248 (392)
T ss_pred eehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC-CCcCCCcccccceEE
Confidence 99999999999999999999999999999986542 34678899999999999753 334588999999988
Q ss_pred EeecCCcEEEEEcCCCCCC---CCeEEEEECCCCcccc----------ccccccCccCCceeeeccCCCCcccccccCCC
Q 007111 259 VQHKEKDFLVAFGGIKKEP---SNQVEVLSIEKNESSM----------GRRSTPNAKGPGQLLFEKRSSSTGLACQLGNG 325 (617)
Q Consensus 259 v~~~~~~~L~I~GG~~~~~---~~dV~vyd~~~~~W~~----------~w~~~~~~~~~~v~vfGG~~~~~~~~~~~~~~ 325 (617)
.. +.+|+|||+++.. .+++|+||+.+..|.. +++.|+...+.++++|||.+.-. .|. .
T Consensus 249 Yn----g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP~~---~~~--~ 319 (392)
T KOG4693|consen 249 YN----GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSPLP---CHP--L 319 (392)
T ss_pred Ec----ceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCCCC---CCC--C
Confidence 86 8899999998754 8999999999999943 67778887999999999997622 111 1
Q ss_pred CCCCCCchhhhhhhHhHHhhcCCCcccccccccCCCCCCCcccchhhhhhh
Q 007111 326 APQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQN 376 (617)
Q Consensus 326 ~~~~~~~s~~r~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 376 (617)
++...+. +- .+.+++.+||-+++|..|+|+++++...++.
T Consensus 320 Spt~~~G----------~~-~~~~LiD~SDLHvLDF~PsLKTLa~~~Vl~~ 359 (392)
T KOG4693|consen 320 SPTNYNG----------MI-SPSGLIDLSDLHVLDFAPSLKTLAMQSVLMF 359 (392)
T ss_pred CccccCC----------CC-CcccccccccceeeecChhHHHHHHHHHHHH
Confidence 1111111 11 4577899999999999999999999988853
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=362.86 Aligned_cols=266 Identities=24% Similarity=0.358 Sum_probs=240.5
Q ss_pred CEEEecCCC-CCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
||++||... ....+.+++||+.++.|..+++ ++. +|..+++++++|.||++||.+.+....+++|+||
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~----------m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAP----------MPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCC----------CCc-ccccccEEEECCEEEEEccccCCCcccceEEEec
Confidence 689999986 6688999999999999999998 343 4447999999999999999965556778999999
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
+.+++|..++ +|+.+|.++++++++|.||++||.++.. .++++++|||.+++|+.+ ++|+.+|++|+++++++
T Consensus 356 ~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~v---a~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPV---APMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCccccc---CCCCcceeeeEEEEECC
Confidence 9999999998 8999999999999999999999999764 799999999999999988 58999999999999999
Q ss_pred cEEEEEccCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 160 KNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 160 ~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
+ ||++||.++.. +++++++|||.+++|+.+++| +.+|.+++++.++++||++||+++......+++||+.+++|+
T Consensus 429 ~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 429 K-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred E-EEEEcCcCCCccccceEEEEcCCCCceeecCCc---ccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 9 99999998877 999999999999999999887 899999999999999999999998666778999999999999
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccccc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMGRR 296 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~w~ 296 (617)
.+. .++.+|..++++++. +.+|++||+++.. ++.|++||+.+++|+..-.
T Consensus 505 ~v~----~m~~~rs~~g~~~~~----~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 505 MVA----PMTSPRSAVGVVVLG----GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred Ecc----cCccccccccEEEEC----CEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 985 455688888888887 8999999998765 8999999999999966433
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=340.35 Aligned_cols=298 Identities=22% Similarity=0.332 Sum_probs=237.1
Q ss_pred CEEEecCCCCCccceEEEE--ECCC----CcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCC-Cce
Q 007111 1 MIVVGGESGNGLLDDVQVL--NFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS-DRV 73 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~y--d~~t----~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~-~~~ 73 (617)
|+.|+|..+. .++.+-.| ++.+ ++|..+.++. ..+.+|.+|+++.+++.||||||...... ..+
T Consensus 123 ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~--------~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~ 193 (470)
T PLN02193 123 IVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKG--------EGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDK 193 (470)
T ss_pred EEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCC--------CCCCCccccEEEEECCEEEEECCcCCCCCCeeC
Confidence 4567776544 46665555 6544 7999987631 12346789999999999999999854333 335
Q ss_pred EEEEEECCCCcEEEeeccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
++|+||+.+++|..++..+++|. +|.+|+++.++++||||||.+... .++++|+||+.+++|+++.+.+..|.+|+.|
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 79999999999999887666665 467899999999999999987653 6899999999999999996544558999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
++++++++ ||||||++....++++++||+.+++|+.+...+.+|.+|.+|+++.++++||++||.++. ..+++++||+
T Consensus 273 ~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~ 350 (470)
T PLN02193 273 SMAADEEN-VYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDP 350 (470)
T ss_pred EEEEECCE-EEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEEC
Confidence 99999988 999999988778899999999999999998766678899999999999999999997643 4688999999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc--------
Q 007111 233 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG-------- 294 (617)
Q Consensus 233 ~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~-------- 294 (617)
.+++|+.+... ...|.+|..|+++++. ++||||||... ...+++|+||+.+++|+..
T Consensus 351 ~t~~W~~~~~~-g~~P~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~ 425 (470)
T PLN02193 351 VQDKWTQVETF-GVRPSERSVFASAAVG----KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEE 425 (470)
T ss_pred CCCEEEEeccC-CCCCCCcceeEEEEEC----CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCC
Confidence 99999998643 2457789999998886 78999999753 1257999999999999642
Q ss_pred ------ccccc--Ccc-CCceeeeccCCCC
Q 007111 295 ------RRSTP--NAK-GPGQLLFEKRSSS 315 (617)
Q Consensus 295 ------w~~~~--~~~-~~~v~vfGG~~~~ 315 (617)
|+.+. ... ...+++|||..++
T Consensus 426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~ 455 (470)
T PLN02193 426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPT 455 (470)
T ss_pred CCCCCccccceeeEEcCCceEEEEcCCCCc
Confidence 22111 111 2348999999763
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=338.51 Aligned_cols=277 Identities=19% Similarity=0.315 Sum_probs=226.6
Q ss_pred CEEEecCCC-CC-ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESG-NG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~-~~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
|||+||... .. ..+++++||+.+++|..++.+.. .|.++|.+|++++++++||||||... ...++++|+|
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~-------~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~y 249 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGD-------VPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSF 249 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCC-------CCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEE
Confidence 689999753 22 34689999999999998765311 22334678999999999999999854 3457899999
Q ss_pred ECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC
Q 007111 79 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 158 (617)
Q Consensus 79 d~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~ 158 (617)
|+.+++|+.+++.+..|.+|+.|+++..+++|||+||.+... .++++++||+.+++|+.++..+.+|.+|.+|++++++
T Consensus 250 D~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~ 328 (470)
T PLN02193 250 DTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ 328 (470)
T ss_pred ECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC
Confidence 999999999985444589999999999999999999997754 5789999999999999997666788999999999999
Q ss_pred CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------CccceEEE
Q 007111 159 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLI 229 (617)
Q Consensus 159 ~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~---------~~~~~v~~ 229 (617)
++ |||+||.++. ..+++++||+.+++|+.+..++..|.+|..|+++.++++|||+||.... ...+++|+
T Consensus 329 gk-iyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 329 GK-VWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred Cc-EEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 98 9999998654 4789999999999999998887889999999999999999999997531 23578999
Q ss_pred EECCCCcEEEeecCCC--CCCCCCcceEEEEEeecCCcEEEEEcCCCC--CCCCeEEEEECCC
Q 007111 230 FDILKGEWSVAITSPS--SSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 288 (617)
Q Consensus 230 yDl~~~~W~~l~~~~~--~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~--~~~~dV~vyd~~~ 288 (617)
||+.+++|+.+...+. ..|.+|..++++.....++..|++|||+.. +.++|+|+|++++
T Consensus 407 ~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 407 LDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred EEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 9999999999875442 346677666554433334466999999964 4489999998765
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=324.94 Aligned_cols=277 Identities=19% Similarity=0.331 Sum_probs=218.8
Q ss_pred CEEEecCCCC--CccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESGN--GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~~--~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
|||+||.... ...+++++||+.+++|..++++.. .+.+.+.+|++++++++||||||... ....+++++|
T Consensus 35 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-------~p~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~y 106 (341)
T PLN02153 35 LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-------VPRISCLGVRMVAVGTKLYIFGGRDE-KREFSDFYSY 106 (341)
T ss_pred EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-------CCCCccCceEEEEECCEEEEECCCCC-CCccCcEEEE
Confidence 6999998532 345799999999999998876311 12223457999999999999999854 3456789999
Q ss_pred ECCCCcEEEeecc--CCCCCCcceeEEEEECCEEEEEeecCCCC-----CccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 79 DTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 79 d~~t~~W~~~~~~--g~~P~~R~~~s~~~~~~~IYv~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
|+.+++|..++.. ...|.+|.+|++++.+++|||+||.+..+ ..++++++||+.+++|+.++..+..|.+|.+
T Consensus 107 d~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~ 186 (341)
T PLN02153 107 DTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGG 186 (341)
T ss_pred ECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCc
Confidence 9999999998731 11388999999999999999999986432 1357899999999999999755556789999
Q ss_pred cEEEEECCcEEEEEccCCCC--------CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC---
Q 007111 152 HVAALYDDKNLLIFGGSSKS--------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--- 220 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~--------~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~--- 220 (617)
|++++++++ |||+||.+.. ...+++++||+.+++|+.+...+..|.+|..|+++.++++||||||...
T Consensus 187 ~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 187 AGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL 265 (341)
T ss_pred ceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc
Confidence 999999998 9999987421 2367899999999999999887778999999999999999999999742
Q ss_pred ------CCccceEEEEECCCCcEEEeecCCC-CCCCCCcceEEEEEeecCCcEEEEEcCCCC--CCCCeEEEEECCC
Q 007111 221 ------KKRHAETLIFDILKGEWSVAITSPS-SSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 288 (617)
Q Consensus 221 ------~~~~~~v~~yDl~~~~W~~l~~~~~-~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~--~~~~dV~vyd~~~ 288 (617)
....+++|+||+.+++|+.+..... ..|..+..++++.+. +++.|||+||+.. +.++++|+|+...
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~--~~~~~~~~gG~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY--GKNGLLMHGGKLPTNERTDDLYFYAVNS 340 (341)
T ss_pred ccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccC--CcceEEEEcCcCCCCccccceEEEeccc
Confidence 2235689999999999999864322 334455556666554 3468999999964 3589999998753
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=344.11 Aligned_cols=250 Identities=12% Similarity=0.166 Sum_probs=216.1
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
...+++||+.+++|..+++ +|. +|.+|+++++++.|||+||........+++++||+.+++|..++
T Consensus 271 ~~~v~~yd~~~~~W~~l~~----------mp~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--- 336 (557)
T PHA02713 271 NPCILVYNINTMEYSVIST----------IPN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP--- 336 (557)
T ss_pred CCCEEEEeCCCCeEEECCC----------CCc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---
Confidence 3578999999999999987 444 34578999999999999998544445688999999999999998
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCC-
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS- 171 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~- 171 (617)
+||.+|.++++++++++||++||.++.. .++++++|||.+++|+.++ +||.+|.++++++++++ ||++||.++.
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~-IYviGG~~~~~ 411 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQY-IYIIGGRTEHI 411 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEECCE-EEEEeCCCccc
Confidence 8999999999999999999999987653 5789999999999999984 89999999999999998 9999998642
Q ss_pred -----------------CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCcc-ceEEEEECC
Q 007111 172 -----------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH-AETLIFDIL 233 (617)
Q Consensus 172 -----------------~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~-~~v~~yDl~ 233 (617)
...+.+++|||.+++|+.++++ |.+|..+++++++++||++||.++.... +.+++||+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 1367899999999999999876 8899999999999999999998644333 457999999
Q ss_pred C-CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCccccc
Q 007111 234 K-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 234 ~-~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~~ 294 (617)
+ ++|+.++ ..|.+|..+++++++ ++||++||+++. ..+++||+.+++|+..
T Consensus 489 ~~~~W~~~~----~m~~~r~~~~~~~~~----~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 489 TYNGWELIT----TTESRLSALHTILHD----NTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCeeEcc----ccCcccccceeEEEC----CEEEEEeeecce--eehhhcCcccccccch
Confidence 9 8999986 456789999999997 899999999863 4799999999999654
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=319.44 Aligned_cols=281 Identities=22% Similarity=0.334 Sum_probs=220.2
Q ss_pred CCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCC-CCceEEEEEECCCCcEEEeeccCCCCCC-c
Q 007111 21 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-SDRVSVWTFDTETECWSVVEAKGDIPVA-R 98 (617)
Q Consensus 21 ~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~g~~P~~-R 98 (617)
+....|..+..... ..+.+|.+|++++++++||||||..... ...+++|+||+.+++|..+++.+..|.. +
T Consensus 4 ~~~~~W~~~~~~~~-------~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~ 76 (341)
T PLN02153 4 TLQGGWIKVEQKGG-------KGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISC 76 (341)
T ss_pred ccCCeEEEecCCCC-------CCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCcc
Confidence 35677998876311 1234677899999999999999985432 2346899999999999998854444443 4
Q ss_pred ceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC--CCCCCCCcccEEEEECCcEEEEEccCCCC-----
Q 007111 99 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSSKS----- 171 (617)
Q Consensus 99 ~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~P~~R~~h~a~~~~~~~LyV~GG~~~~----- 171 (617)
.+|++++++++||+|||.+... .++++++||+.+++|+.++.. ...|.+|..|++++++++ ||||||.+..
T Consensus 77 ~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 77 LGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENH-VYVFGGVSKGGLMKT 154 (341)
T ss_pred CceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCE-EEEECCccCCCccCC
Confidence 5789999999999999987654 578999999999999988521 123889999999999988 9999998642
Q ss_pred -CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC--------CccceEEEEECCCCcEEEeec
Q 007111 172 -KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK--------KRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 172 -~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~--------~~~~~v~~yDl~~~~W~~l~~ 242 (617)
..++++++||+.+++|+.+..++.+|.+|.+|+++.++++|||+||.... ...+++++||+.+++|+.+..
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 24678999999999999998877677899999999999999999986421 225789999999999999863
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc-----------cc--ccc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG-----------RR--STP 299 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~-----------w~--~~~ 299 (617)
. ...|.+|..|+++++. ++||||||... ...+++|+||+.+++|+.. |. .++
T Consensus 235 ~-g~~P~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~ 309 (341)
T PLN02153 235 T-GAKPSARSVFAHAVVG----KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTA 309 (341)
T ss_pred c-CCCCCCcceeeeEEEC----CEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccccc
Confidence 2 2357789999999887 89999999731 2257999999999999642 32 122
Q ss_pred Ccc-CCceeeeccCCCC
Q 007111 300 NAK-GPGQLLFEKRSSS 315 (617)
Q Consensus 300 ~~~-~~~v~vfGG~~~~ 315 (617)
... .+.+++|||..+.
T Consensus 310 ~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 310 TVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccCCcceEEEEcCcCCC
Confidence 223 3479999999774
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=284.13 Aligned_cols=268 Identities=26% Similarity=0.455 Sum_probs=230.6
Q ss_pred CEEEecCCCCC-----ccceEEEEECCCCcEEEcccccc--CCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCce
Q 007111 1 MIVVGGESGNG-----LLDDVQVLNFDRFSWTAASSKLY--LSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 73 (617)
Q Consensus 1 i~V~GG~~~~~-----~~~~v~~yd~~t~~W~~l~~~~~--~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~ 73 (617)
||-|||.-.+. ..-||.++|..+.+|+++++... ..++.-|.-+--|++|+.|.+.+++||+||.++.....+
T Consensus 26 iYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN 105 (392)
T KOG4693|consen 26 IYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACN 105 (392)
T ss_pred EEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccc
Confidence 57889863221 23479999999999999987311 122222334446899999999999999999988777889
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCC-CCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~-~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
.++.||++++.|.+...+|-+|.+|-+|++|++++..|||||+... .+++++++.+|..+-+|+.+.++|..|.=|..|
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH 185 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH 185 (392)
T ss_pred eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh
Confidence 9999999999999999999999999999999999999999998653 358999999999999999999999999999999
Q ss_pred EEEEECCcEEEEEccCCC---------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC--
Q 007111 153 VAALYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-- 221 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~---------~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~-- 221 (617)
+++++++. +|||||+++ ..+++.|..+|+.|+.|......+..|.+|..|++...++++|+|||.++.
T Consensus 186 ~a~~~~~~-MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln 264 (392)
T KOG4693|consen 186 TASVIDGM-MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN 264 (392)
T ss_pred hhhhccce-EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh
Confidence 99999977 999999864 246889999999999999998888889999999999999999999999865
Q ss_pred CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 222 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 222 ~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
.-++++|.||+.+..|..+.. ....|.+|..+++++.+ +++|+|||..
T Consensus 265 ~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~g----~kv~LFGGTs 312 (392)
T KOG4693|consen 265 VHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVSG----GKVYLFGGTS 312 (392)
T ss_pred hhhcceeecccccchheeeec-cCCCCCcccceeEEEEC----CEEEEecCCC
Confidence 457899999999999999875 44568888889998887 8899999975
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.82 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=213.8
Q ss_pred ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 12 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 12 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
....+..|+..+.+|..+.. .|.+..|+++++++.||++||........+++++||+.+++|..++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-- 327 (534)
T PHA03098 262 FTYNYITNYSPLSEINTIID------------IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP-- 327 (534)
T ss_pred hhceeeecchhhhhcccccC------------ccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC--
Confidence 34567788988999988764 2234457899999999999999655555678999999999999988
Q ss_pred CCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC-
Q 007111 92 GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK- 170 (617)
Q Consensus 92 g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~- 170 (617)
++|.+|.+|+++.++++||++||.+.. ...+++++||+.+++|+.++ ++|.+|++|+++.++++ |||+||...
T Consensus 328 -~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~-iYv~GG~~~~ 401 (534)
T PHA03098 328 -ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNL-IYVIGGISKN 401 (534)
T ss_pred -CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCE-EEEECCcCCC
Confidence 789999999999999999999998754 36889999999999999884 89999999999999998 999999753
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---ccceEEEEECCCCcEEEeecCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
...++++++||+.+++|+.+.++ |.+|.+|+++.++++|||+||.+... .++.+++||+.+++|+.++. .
T Consensus 402 ~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~ 474 (534)
T PHA03098 402 DELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----L 474 (534)
T ss_pred CcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----C
Confidence 44678999999999999998765 88999999999999999999976443 25679999999999999863 3
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCcccccc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMGR 295 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~w 295 (617)
+.+|.++++++++ +.|||+||.+... .++|++||+++++|....
T Consensus 475 ~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 475 NFPRINASLCIFN----NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CcccccceEEEEC----CEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 4567888887775 8899999987554 789999999999996553
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=315.20 Aligned_cols=219 Identities=26% Similarity=0.394 Sum_probs=203.7
Q ss_pred CEEEecCC-CCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+||.+ +...++++++||+.+++|..+++| . .+|.+|++++++|.||++||.+ +....+++++||
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M----------~-~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YD 402 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM----------N-TKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYD 402 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccCCc----------c-CccccceeEEECCEEEEEeccc-cccccccEEEec
Confidence 69999999 778899999999999999999874 3 4666899999999999999996 556788999999
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
|.+++|..++ +|+.+|++|++++++++||++||.++....++++++|||.+++|+.++ +|+.+|.+++++++++
T Consensus 403 p~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~ 476 (571)
T KOG4441|consen 403 PVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNG 476 (571)
T ss_pred CCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECC
Confidence 9999999998 899999999999999999999999887668999999999999999995 9999999999999999
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
. ||++||+++...+..+++|||.+++|+.+.++ +.+|..+.++.+++++|++||+.+...++.+..||+.+++|+.
T Consensus 477 ~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 477 K-IYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred E-EEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 9 99999999877788899999999999999776 8899999999999999999999999999999999999999999
Q ss_pred ee
Q 007111 240 AI 241 (617)
Q Consensus 240 l~ 241 (617)
..
T Consensus 553 ~~ 554 (571)
T KOG4441|consen 553 VT 554 (571)
T ss_pred CC
Confidence 86
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=303.31 Aligned_cols=281 Identities=31% Similarity=0.498 Sum_probs=244.4
Q ss_pred CEEEecCCCCCccce--EEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
||||||........+ ++++|..+..|....... ..+++|++|+++.++++||+|||.+......++++.|
T Consensus 73 ~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g--------~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~ 144 (482)
T KOG0379|consen 73 LYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG--------DEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSL 144 (482)
T ss_pred EEEECCCCCCCccccceeEEeecCCcccccccccC--------CCCCcccceeEEEECCeEEEEccccCCCCChhheEec
Confidence 689999887665555 999999999998887642 2336889999999999999999997656667899999
Q ss_pred ECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC
Q 007111 79 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 158 (617)
Q Consensus 79 d~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~ 158 (617)
|+.+++|..+...+..|++|.+|+++++++++|||||.+..+..++++|+||+.+.+|.++.+.|..|.||++|++++++
T Consensus 145 d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~ 224 (482)
T KOG0379|consen 145 DLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVG 224 (482)
T ss_pred cCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEEC
Confidence 99999999999999999999999999999999999999988768999999999999999999999999999999999999
Q ss_pred CcEEEEEccCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-C-ccceEEEEECCCC
Q 007111 159 DKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-K-RHAETLIFDILKG 235 (617)
Q Consensus 159 ~~~LyV~GG~~-~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~-~-~~~~v~~yDl~~~ 235 (617)
++ ++||||.+ +..+++++|.+|+.+..|..+...+..|.+|++|+++..+++++|+||.... . .+.++|.||..+.
T Consensus 225 ~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~ 303 (482)
T KOG0379|consen 225 NK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETL 303 (482)
T ss_pred Ce-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccccccccccccccccc
Confidence 99 77777776 7889999999999999999999999999999999999889999999998875 2 5889999999999
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC--CCCCCeEEEEECCCCc
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK--KEPSNQVEVLSIEKNE 290 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~--~~~~~dV~vyd~~~~~ 290 (617)
.|..+.......|.++..++...+...+...+.++||.. ....++++...+....
T Consensus 304 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (482)
T KOG0379|consen 304 VWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLS 360 (482)
T ss_pred ceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccc
Confidence 999998655356788899998888887778888888854 3335666655554433
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=286.83 Aligned_cols=258 Identities=16% Similarity=0.196 Sum_probs=197.1
Q ss_pred CEEEecCCCCCccceEEEEEC--CCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCC-----CCce
Q 007111 1 MIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-----SDRV 73 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~--~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~-----~~~~ 73 (617)
|||+||... +++++||+ .+++|..+++ ++.++|..|++++++++|||+||..... ..++
T Consensus 20 vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 20 VYVGLGSAG----TSWYKLDLKKPSKGWQKIAD----------FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred EEEEccccC----CeeEEEECCCCCCCceECCC----------CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecc
Confidence 689999642 67999996 5788999987 4445677899999999999999985322 1357
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEE-EECCEEEEEeecCCCC--------------------------------
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKR-------------------------------- 120 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~-~~~~~IYv~GG~~~~~-------------------------------- 120 (617)
++|+||+.+++|+.++. .+|.+|.+++++ .++++||++||.+...
T Consensus 86 ~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred cEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 89999999999999973 467788888777 6899999999986320
Q ss_pred -CccCeEEEEECCCCcEEEeecCCCCCC-CCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEE--CCCCcEEEeecCCC
Q 007111 121 -RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLD--FETMIWTRIKIRGF 195 (617)
Q Consensus 121 -~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD--~~t~~W~~~~~~g~ 195 (617)
..++++++||+.+++|+.+. +||. +|+++++++++++ |||+||..... ...+++.|| +.+++|+.+..++.
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred cCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 12478999999999999984 7885 6899999999988 99999986432 234566665 46779999988732
Q ss_pred C----CCCCcceEEEEECCEEEEEecCCCCC-----------------ccceEEEEECCCCcEEEeecCCCCCCCCCcce
Q 007111 196 H----PSPRAGCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGF 254 (617)
Q Consensus 196 ~----P~~R~~ha~v~~~~~IyI~GG~s~~~-----------------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~ 254 (617)
+ +.++.+|+++.++++|||+||.+... ....+.+||+.+++|+.+.. .|.+|..+
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~----lp~~~~~~ 315 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK----LPQGLAYG 315 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC----CCCCceee
Confidence 1 12234666778899999999975211 12357899999999999863 45567777
Q ss_pred EEEEEeecCCcEEEEEcCCCCC--CCCeEEEEEC
Q 007111 255 TLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSI 286 (617)
Q Consensus 255 s~v~v~~~~~~~L~I~GG~~~~--~~~dV~vyd~ 286 (617)
++++++ +.|||+||.+.. ..++|+.+..
T Consensus 316 ~~~~~~----~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 316 VSVSWN----NGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred EEEEcC----CEEEEEeccCCCCCEeeeEEEEEe
Confidence 776666 899999998743 3788887653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=281.93 Aligned_cols=246 Identities=19% Similarity=0.339 Sum_probs=192.8
Q ss_pred CEEEecCCCCC----------ccceEEEEEC-C-CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCC
Q 007111 1 MIVVGGESGNG----------LLDDVQVLNF-D-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 68 (617)
Q Consensus 1 i~V~GG~~~~~----------~~~~v~~yd~-~-t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~ 68 (617)
|||+||.+... .++++++|+. . +.+|..+++ +|.|++ .++++++++.||++||...
T Consensus 16 l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~----------lp~~r~-~~~~~~~~~~lyviGG~~~- 83 (323)
T TIGR03548 16 ILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ----------LPYEAA-YGASVSVENGIYYIGGSNS- 83 (323)
T ss_pred EEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc----------CCcccc-ceEEEEECCEEEEEcCCCC-
Confidence 68999986542 4468888863 3 237999886 444444 5677888999999999854
Q ss_pred CCCceEEEEEECCCCcE----EEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCC
Q 007111 69 GSDRVSVWTFDTETECW----SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT 144 (617)
Q Consensus 69 ~~~~~~v~~yd~~t~~W----~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 144 (617)
....+++|+||+.+++| ..++ ++|.+|..|++++++++||++||.... ...+++++||+.+++|+.++ +
T Consensus 84 ~~~~~~v~~~d~~~~~w~~~~~~~~---~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~ 156 (323)
T TIGR03548 84 SERFSSVYRITLDESKEELICETIG---NLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELP---D 156 (323)
T ss_pred CCCceeEEEEEEcCCceeeeeeEcC---CCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECC---C
Confidence 44578999999999998 4554 799999999999999999999998543 35899999999999999984 6
Q ss_pred CC-CCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC--CCCCCcceEEEE-ECCEEEEEecCCC
Q 007111 145 GP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSPRAGCCGVL-CGTKWYIAGGGSR 220 (617)
Q Consensus 145 ~P-~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~--~P~~R~~ha~v~-~~~~IyI~GG~s~ 220 (617)
+| .+|..|++++++++ |||+||.+... ..++++||+.+++|+.+..+.. .|.++..++++. .+++|||+||.+.
T Consensus 157 ~p~~~r~~~~~~~~~~~-iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 157 FPGEPRVQPVCVKLQNE-LYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNK 234 (323)
T ss_pred CCCCCCCcceEEEECCE-EEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCH
Confidence 76 47999999899988 99999986543 4678999999999999987632 233444454444 4799999999864
Q ss_pred CC--------------------------------ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEE
Q 007111 221 KK--------------------------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLV 268 (617)
Q Consensus 221 ~~--------------------------------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~ 268 (617)
.. ..+++++||+.+++|+.++..+ ..+|.+++++++. +.||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~~~~~~~----~~iy 307 (323)
T TIGR03548 235 DVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGAALLLTG----NNIF 307 (323)
T ss_pred HHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCchheEEEC----CEEE
Confidence 21 1367999999999999986322 2478899988887 8899
Q ss_pred EEcCCC
Q 007111 269 AFGGIK 274 (617)
Q Consensus 269 I~GG~~ 274 (617)
++||..
T Consensus 308 v~GG~~ 313 (323)
T TIGR03548 308 SINGEL 313 (323)
T ss_pred EEeccc
Confidence 999974
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=281.69 Aligned_cols=258 Identities=17% Similarity=0.238 Sum_probs=200.1
Q ss_pred cccceEEEEECCEEEEEcccCCCC---------CCceEEEEEECCC--CcEEEeeccCCCCCCcceeEEEEECCEEEEEe
Q 007111 46 ACRGHSLISWGKKVLLVGGKTDSG---------SDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRASSVLILFG 114 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~~~~~---------~~~~~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~G 114 (617)
.+.++.++++++.|||+||.+.+. ..++++|+|+... .+|..++ ++|.+|..++++++++.||++|
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviG 79 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIG 79 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEc
Confidence 456788899999999999986543 2346899886333 2698887 7999999888899999999999
Q ss_pred ecCCCCCccCeEEEEECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC
Q 007111 115 GEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 193 (617)
Q Consensus 115 G~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~ 193 (617)
|.+... .++++++||+.+++|. .....+++|.+|..|++++++++ |||+||.......+++++||+.+++|+.+.++
T Consensus 80 G~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~-iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 157 (323)
T TIGR03548 80 GSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGT-LYVGGGNRNGKPSNKSYLFNLETQEWFELPDF 157 (323)
T ss_pred CCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCE-EEEEeCcCCCccCceEEEEcCCCCCeeECCCC
Confidence 987653 5789999999999982 11222589999999999999998 99999986666789999999999999998765
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC-CCCCCCcceEEEEEeecCCcEEEEEcC
Q 007111 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS-SSVTSNKGFTLVLVQHKEKDFLVAFGG 272 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~-~~p~~r~~~s~v~v~~~~~~~L~I~GG 272 (617)
+ ..+|..|+++.++++|||+||..... ..++++||+.+++|+.++.++. ..|..+.+++++++. +++|||+||
T Consensus 158 p--~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG 231 (323)
T TIGR03548 158 P--GEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN---ESLLLCIGG 231 (323)
T ss_pred C--CCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEEC---CCEEEEECC
Confidence 1 24788898889999999999986432 4568999999999999875432 234444455544443 378999999
Q ss_pred CCCCC---------------------------------CCeEEEEECCCCccccc--------cccccCccCCceeeecc
Q 007111 273 IKKEP---------------------------------SNQVEVLSIEKNESSMG--------RRSTPNAKGPGQLLFEK 311 (617)
Q Consensus 273 ~~~~~---------------------------------~~dV~vyd~~~~~W~~~--------w~~~~~~~~~~v~vfGG 311 (617)
.++.. .+.|++||+.+++|+.. ..+.....++.++++||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSING 311 (323)
T ss_pred cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEec
Confidence 86421 36799999999999542 22234457889999999
Q ss_pred CCC
Q 007111 312 RSS 314 (617)
Q Consensus 312 ~~~ 314 (617)
...
T Consensus 312 ~~~ 314 (323)
T TIGR03548 312 ELK 314 (323)
T ss_pred ccc
Confidence 743
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=297.98 Aligned_cols=246 Identities=33% Similarity=0.544 Sum_probs=221.2
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCce-EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 120 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~ 120 (617)
..+.+|++|+++.+++++|||||........+ ++|+||..+..|....+++..|.+|++|+++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 45567889999999999999999855444333 59999999999999999999999999999999999999999998655
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSP 199 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~~~~~~g~~P~~ 199 (617)
..+++++.||+.+++|..+.+.+.+|.+|.+|++++++++ +|||||.+... ..|++|+||+.+.+|.++...+..|.|
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~-l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK-LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE-EEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 5689999999999999999988999999999999999977 99999998765 899999999999999999999999999
Q ss_pred CcceEEEEECCEEEEEecCC-CCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC--
Q 007111 200 RAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 276 (617)
Q Consensus 200 R~~ha~v~~~~~IyI~GG~s-~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-- 276 (617)
|.+|+++.+++++|||||.. ++..++++|.+|+.+..|..+. .....|.+|++|+++... .+++++||....
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~----~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSG----DHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEEC----CEEEEEcCCccccc
Confidence 99999999999999999988 6678899999999999999544 456779999999999665 889999998763
Q ss_pred -CCCeEEEEECCCCcccc
Q 007111 277 -PSNQVEVLSIEKNESSM 293 (617)
Q Consensus 277 -~~~dV~vyd~~~~~W~~ 293 (617)
.+.++|.|++++..|..
T Consensus 290 ~~l~~~~~l~~~~~~w~~ 307 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSK 307 (482)
T ss_pred ccccccccccccccceee
Confidence 68999999999988854
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=298.53 Aligned_cols=220 Identities=19% Similarity=0.310 Sum_probs=191.8
Q ss_pred CEEEecCCCCC-ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+||..... ..+++++||+.+++|..+++ ++ .+|.+|++++++++||++||.. .....+++++||
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~----------~~-~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd 364 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE----------LI-YPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWK 364 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCC----------CC-cccccceEEEECCEEEEEeCCC-CCEecceEEEEc
Confidence 68999987544 56799999999999998876 33 3566899999999999999985 344567899999
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
+.+++|+..+ ++|.+|++|+++.++++||++||....+..++++++||+.+++|+.+. ++|.+|++|+++.+++
T Consensus 365 ~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~ 438 (534)
T PHA03098 365 PGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDG 438 (534)
T ss_pred CCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECC
Confidence 9999999988 789999999999999999999998665556899999999999999884 7999999999999999
Q ss_pred cEEEEEccCCCCC---CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 160 KNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 160 ~~LyV~GG~~~~~---~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+ |||+||.+... ..+.+++||+.+++|+.+..+ |.+|.+++++.++++|||+||.......+++++||+.+++
T Consensus 439 ~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 439 K-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred E-EEEECCccCCCCCcccceEEEecCCCCceeeCCCC---CcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 8 99999986432 367799999999999998765 7789999999999999999998876667889999999999
Q ss_pred EEEeec
Q 007111 237 WSVAIT 242 (617)
Q Consensus 237 W~~l~~ 242 (617)
|..++.
T Consensus 515 W~~~~~ 520 (534)
T PHA03098 515 WTLFCK 520 (534)
T ss_pred EEecCC
Confidence 999864
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=281.67 Aligned_cols=260 Identities=17% Similarity=0.262 Sum_probs=199.1
Q ss_pred CEEEecCCCCCccceEEEEECC--CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCC-C----CCCce
Q 007111 1 MIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD-S----GSDRV 73 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~-~----~~~~~ 73 (617)
|||+||..+ +.+++||+. ++.|..+++ ++.++|.+|++++++++|||+||... . ....+
T Consensus 41 iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~ 106 (376)
T PRK14131 41 VYVGLGSAG----TSWYKLDLNAPSKGWTKIAA----------FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFD 106 (376)
T ss_pred EEEEeCCCC----CeEEEEECCCCCCCeEECCc----------CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcc
Confidence 689999643 458999986 478998886 44456788999999999999999854 1 12357
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCC--------------------------------
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR-------------------------------- 120 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~-------------------------------- 120 (617)
++|+||+.+++|..++. ..|.++.+|++++ .+++||++||.+...
T Consensus 107 ~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred cEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 89999999999999973 3477788888777 799999999975310
Q ss_pred -CccCeEEEEECCCCcEEEeecCCCCCC-CCcccEEEEECCcEEEEEccCCCC-CCCCeEE--EEECCCCcEEEeecCCC
Q 007111 121 -RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKS-KTLNDLY--SLDFETMIWTRIKIRGF 195 (617)
Q Consensus 121 -~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~~~~-~~~n~v~--~yD~~t~~W~~~~~~g~ 195 (617)
...+++++||+.+++|+.+ +++|. +|.+|+++.++++ |||+||.... ....+++ .||+++++|+.+..+
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~---~~~p~~~~~~~a~v~~~~~-iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-- 258 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNA---GESPFLGTAGSAVVIKGNK-LWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL-- 258 (376)
T ss_pred cCcCceEEEEECCCCeeeEC---CcCCCCCCCcceEEEECCE-EEEEeeeECCCcCChhheEEEecCCCcceeecCCC--
Confidence 1257899999999999988 47885 7888998888988 9999997432 2334444 457789999999876
Q ss_pred CCCCCc--------ceEEEEECCEEEEEecCCCCC-----------------ccceEEEEECCCCcEEEeecCCCCCCCC
Q 007111 196 HPSPRA--------GCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEWSVAITSPSSSVTS 250 (617)
Q Consensus 196 ~P~~R~--------~ha~v~~~~~IyI~GG~s~~~-----------------~~~~v~~yDl~~~~W~~l~~~~~~~p~~ 250 (617)
|.+|. ++.++.++++|||+||.+... ....+.+||+.+++|+.+. ..|.+
T Consensus 259 -p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~----~lp~~ 333 (376)
T PRK14131 259 -PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG----ELPQG 333 (376)
T ss_pred -CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC----cCCCC
Confidence 44432 233566799999999975321 0124578999999999875 44667
Q ss_pred CcceEEEEEeecCCcEEEEEcCCCC--CCCCeEEEEECCCCcc
Q 007111 251 NKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKNES 291 (617)
Q Consensus 251 r~~~s~v~v~~~~~~~L~I~GG~~~--~~~~dV~vyd~~~~~W 291 (617)
|..++++++. +.|||+||... ...++|++|.++.+.+
T Consensus 334 r~~~~av~~~----~~iyv~GG~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 334 LAYGVSVSWN----NGVLLIGGETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred ccceEEEEeC----CEEEEEcCCCCCCcEeeeEEEEEEcCCEE
Confidence 8888877776 88999999853 3488999999987765
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-31 Score=297.96 Aligned_cols=224 Identities=15% Similarity=0.172 Sum_probs=193.0
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+++||+.+++|..++ ++|.+|.+++++++++.||++||.+......+++++||+.+++|..++ +||.+|+++
T Consensus 272 ~~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~ 345 (557)
T PHA02713 272 PCILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---PMIKNRCRF 345 (557)
T ss_pred CCEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---CCcchhhce
Confidence 46899999999999998 799999999999999999999998644446799999999999999884 899999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC----------
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---------- 222 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---------- 222 (617)
++++++++ ||++||.++....+++++|||.+++|+.++++ |.+|..++++.++++||++||.+...
T Consensus 346 ~~~~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~m---p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 346 SLAVIDDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDM---PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred eEEEECCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCC---CcccccccEEEECCEEEEEeCCCccccccccccccc
Confidence 99999999 99999998777788999999999999998776 89999999999999999999976421
Q ss_pred --------ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC--CCeEEEEECCC-Ccc
Q 007111 223 --------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSIEK-NES 291 (617)
Q Consensus 223 --------~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~--~~dV~vyd~~~-~~W 291 (617)
..+.+++||+.+++|+.++ +++.+|..++++++. +.||++||.++.. .+.|++||+++ ++|
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~----~m~~~r~~~~~~~~~----~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLP----NFWTGTIRPGVVSHK----DDIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecC----CCCcccccCcEEEEC----CEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 2577999999999999986 455678888988887 8999999986432 35689999999 899
Q ss_pred cc-------ccccccCccCCceeeeccCCC
Q 007111 292 SM-------GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 292 ~~-------~w~~~~~~~~~~v~vfGG~~~ 314 (617)
+. +........+++++++||..+
T Consensus 494 ~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 494 ELITTTESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred eEccccCcccccceeEEECCEEEEEeeecc
Confidence 54 334444557999999999855
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=276.47 Aligned_cols=254 Identities=21% Similarity=0.270 Sum_probs=193.1
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC--CCCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT--ETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDG 118 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~ 118 (617)
+|. ++..+++++++++|||+||.. .+++|+||+ .+++|..++ ++| .+|..+++++++++||++||...
T Consensus 4 lp~-~~~~~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 4 LPV-GFKNGTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CCc-cccCceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCC
Confidence 444 445577888999999999973 257999996 578899998 788 58999999999999999999864
Q ss_pred CC-----CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEE-EECCcEEEEEccCCCCC--------------------
Q 007111 119 KR-----RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA-LYDDKNLLIFGGSSKSK-------------------- 172 (617)
Q Consensus 119 ~~-----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~-~~~~~~LyV~GG~~~~~-------------------- 172 (617)
.. ..++++|+||+.+++|+++. .++|.+|.+|+++ +++++ ||++||++...
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~--~~~p~~~~~~~~~~~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLLGASGFSLHNGQ-AYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCcceecccEEEEECCCCEEecCC--CCCCCcccceeEEEEeCCE-EEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 32 25789999999999999985 2567788888877 67777 99999986321
Q ss_pred --------------CCCeEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEecCCCCC-ccceEEEEEC--CC
Q 007111 173 --------------TLNDLYSLDFETMIWTRIKIRGFHPS-PRAGCCGVLCGTKWYIAGGGSRKK-RHAETLIFDI--LK 234 (617)
Q Consensus 173 --------------~~n~v~~yD~~t~~W~~~~~~g~~P~-~R~~ha~v~~~~~IyI~GG~s~~~-~~~~v~~yDl--~~ 234 (617)
..+++++||+.+++|+.+.++ |. +|.+++++.++++|||+||..... ...+++.|++ .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~ 228 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGK 228 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccC---CCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCC
Confidence 247899999999999999776 54 688899999999999999976432 2345666654 66
Q ss_pred CcEEEeecCCCCC---CCCCcceEEEEEeecCCcEEEEEcCCCCC------------------CCCeEEEEECCCCcccc
Q 007111 235 GEWSVAITSPSSS---VTSNKGFTLVLVQHKEKDFLVAFGGIKKE------------------PSNQVEVLSIEKNESSM 293 (617)
Q Consensus 235 ~~W~~l~~~~~~~---p~~r~~~s~v~v~~~~~~~L~I~GG~~~~------------------~~~dV~vyd~~~~~W~~ 293 (617)
+.|+.++.++... +..+.+|+++++. ++|||+||.+.. ....+++||+++++|+.
T Consensus 229 ~~W~~~~~m~~~r~~~~~~~~~~~a~~~~----~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~ 304 (346)
T TIGR03547 229 LEWNKLPPLPPPKSSSQEGLAGAFAGISN----GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSK 304 (346)
T ss_pred ceeeecCCCCCCCCCccccccEEeeeEEC----CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccc
Confidence 7999987543221 1233456566665 889999997521 12468999999999954
Q ss_pred c-------cccccCccCCceeeeccCCC
Q 007111 294 G-------RRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 294 ~-------w~~~~~~~~~~v~vfGG~~~ 314 (617)
. ...+....++.++++||...
T Consensus 305 ~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 305 VGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred cCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 2 22333347999999999854
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=287.19 Aligned_cols=208 Identities=16% Similarity=0.270 Sum_probs=182.0
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
.+..++.||++||... ....+++++||+.+++|..++ +||.+|..+++++++++||++||.+.. +++++||+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC----CceEEEEC
Confidence 3458999999999843 345678999999999999998 799999999999999999999998542 56999999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 211 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~ 211 (617)
.+++|..++ +||.+|.+|++++++++ ||++||.++. .+.+++|||.+++|+.++++ |.+|.+|+++.++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNV-IYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCE-EEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999884 89999999999999999 9999998643 36799999999999998776 889999999999999
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~ 290 (617)
||++||. +.+||+.+++|+.++ .++.+|.+++++++. ++||++||.++.. .+.|++||+.+++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~----~m~~~r~~~~~~v~~----~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLID----DPIYPRDNPELIIVD----NKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcC----CCCCCccccEEEEEC----CEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999984 568999999999986 345688899999887 8999999987443 6789999999999
Q ss_pred cc
Q 007111 291 SS 292 (617)
Q Consensus 291 W~ 292 (617)
|+
T Consensus 474 W~ 475 (480)
T PHA02790 474 WN 475 (480)
T ss_pred EE
Confidence 94
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=286.82 Aligned_cols=204 Identities=16% Similarity=0.232 Sum_probs=180.6
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||.++....+++++||+.+++|..+++ ++. +|..+++++++++||++||... ..++++||+
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~----------m~~-~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp 338 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPP----------MNS-PRLYASGVPANNKLYVVGGLPN----PTSVERWFH 338 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCC----------CCc-hhhcceEEEECCEEEEECCcCC----CCceEEEEC
Confidence 6899998777778899999999999999997 333 5556888999999999999742 256999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 160 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~ 160 (617)
.+++|..++ +||.+|.++++++++++||++||.+.. .+.+++|||.+++|+.++ +||.+|++|++++++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 999999998 899999999999999999999998643 367999999999999984 89999999999999999
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 161 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 161 ~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
||++||. +.+||+.+++|+.++++ |.+|.++++++++++||++||.+.....+.+++||+.+++|+..
T Consensus 410 -IYv~GG~--------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 410 -LFLVGRN--------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -EEEECCc--------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 9999984 67899999999999776 78999999999999999999987655567899999999999874
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=267.39 Aligned_cols=230 Identities=31% Similarity=0.561 Sum_probs=198.0
Q ss_pred CEEEecCCCCC----ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC-CEEEEEcccCCCC-----C
Q 007111 1 MIVVGGESGNG----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSG-----S 70 (617)
Q Consensus 1 i~V~GG~~~~~----~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g-~~lyV~GG~~~~~-----~ 70 (617)
+|+|||..-++ .+++++.||..+++|..+.. | .++|+|.+|.+|++- |.+|||||..... .
T Consensus 81 LilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-----p----n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~ 151 (521)
T KOG1230|consen 81 LILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-----P----NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFH 151 (521)
T ss_pred eEEecceeecceeEEEeeeeeEEeccccceeEecc-----C----CCcCCCccceeEEeccCeEEEeccccCCcchhhhh
Confidence 68999985433 67999999999999999976 2 456778889888885 8999999985322 2
Q ss_pred CceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCC---CccCeEEEEECCCCcEEEeecCCCCCC
Q 007111 71 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPS 147 (617)
Q Consensus 71 ~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~---~~~~~v~~yD~~t~~W~~l~~~g~~P~ 147 (617)
.+.++|+||+.+++|.++...| -|.+|++|-+++...+|+||||+-... .|+|++|+||+.+.+|+++.+.|..|.
T Consensus 152 HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt 230 (521)
T KOG1230|consen 152 HYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT 230 (521)
T ss_pred hhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC
Confidence 4678999999999999998876 599999999999999999999975432 389999999999999999999888999
Q ss_pred CCcccEEEEE-CCcEEEEEccCCC---------CCCCCeEEEEECCC-----CcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 148 PRSNHVAALY-DDKNLLIFGGSSK---------SKTLNDLYSLDFET-----MIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 148 ~R~~h~a~~~-~~~~LyV~GG~~~---------~~~~n~v~~yD~~t-----~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
||+||.+.+. .+. |||+|||+. +...++.|.+++.+ ..|+.+.+.|-.|.||+++++++. +++
T Consensus 231 pRSGcq~~vtpqg~-i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~k 309 (521)
T KOG1230|consen 231 PRSGCQFSVTPQGG-IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHK 309 (521)
T ss_pred CCCcceEEecCCCc-EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCc
Confidence 9999999999 667 999999963 45788999999988 789999999999999999999887 669
Q ss_pred EEEEecCCCC---------CccceEEEEECCCCcEEEee
Q 007111 212 WYIAGGGSRK---------KRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 212 IyI~GG~s~~---------~~~~~v~~yDl~~~~W~~l~ 241 (617)
-|.|||..+- ..++++|.||++.++|....
T Consensus 310 al~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 310 ALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred eEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 9999997651 24689999999999998764
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=269.97 Aligned_cols=254 Identities=20% Similarity=0.254 Sum_probs=188.6
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECC--CCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE--TECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDG 118 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~ 118 (617)
+|.|+. .+++++++++|||+||... +.+|+||+. ++.|..++ ++| .+|.+++++.++++|||+||...
T Consensus 25 lP~~~~-~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~ 95 (376)
T PRK14131 25 LPVPFK-NGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGK 95 (376)
T ss_pred CCcCcc-CCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCC
Confidence 555555 4578889999999999732 358999986 47899988 676 58999999999999999999865
Q ss_pred -C----CCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-ECCcEEEEEccCCCC---------------------
Q 007111 119 -K----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKS--------------------- 171 (617)
Q Consensus 119 -~----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~~~~~LyV~GG~~~~--------------------- 171 (617)
. ...++++|+||+.+++|+.+.. .+|.++.+|++++ .+++ ||++||....
T Consensus 96 ~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~-IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 96 TNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGK-AYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCE-EEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 1 1357899999999999999852 3577788888877 6666 9999998531
Q ss_pred -------------CCCCeEEEEECCCCcEEEeecCCCCC-CCCcceEEEEECCEEEEEecCCCC-CccceEE--EEECCC
Q 007111 172 -------------KTLNDLYSLDFETMIWTRIKIRGFHP-SPRAGCCGVLCGTKWYIAGGGSRK-KRHAETL--IFDILK 234 (617)
Q Consensus 172 -------------~~~n~v~~yD~~t~~W~~~~~~g~~P-~~R~~ha~v~~~~~IyI~GG~s~~-~~~~~v~--~yDl~~ 234 (617)
...+++++||+.+++|+.+.++ | .+|.+|+++.++++|||+||.... ....++| .||+++
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~ 249 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES---PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNN 249 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC---CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCC
Confidence 1247899999999999998765 5 478888999899999999996433 2344555 456788
Q ss_pred CcEEEeecCCCCC----CCCCcceEEEEEeecCCcEEEEEcCCCCCC------------------CCeEEEEECCCCccc
Q 007111 235 GEWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEP------------------SNQVEVLSIEKNESS 292 (617)
Q Consensus 235 ~~W~~l~~~~~~~----p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~------------------~~dV~vyd~~~~~W~ 292 (617)
++|..++.++... +..+.++.++++. ++|||+||.+... ...+++||+++++|.
T Consensus 250 ~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 325 (376)
T PRK14131 250 LKWQKLPDLPPAPGGSSQEGVAGAFAGYSN----GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQ 325 (376)
T ss_pred cceeecCCCCCCCcCCcCCccceEeceeEC----CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccc
Confidence 9999987544321 1111223344554 7899999975210 135789999999995
Q ss_pred c-------ccccccCccCCceeeeccCCC
Q 007111 293 M-------GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 293 ~-------~w~~~~~~~~~~v~vfGG~~~ 314 (617)
. ++.+.+...+++++++||...
T Consensus 326 ~~~~lp~~r~~~~av~~~~~iyv~GG~~~ 354 (376)
T PRK14131 326 KVGELPQGLAYGVSVSWNNGVLLIGGETA 354 (376)
T ss_pred ccCcCCCCccceEEEEeCCEEEEEcCCCC
Confidence 3 334445557999999999854
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=253.46 Aligned_cols=244 Identities=27% Similarity=0.525 Sum_probs=202.6
Q ss_pred CCCcccceEEEEE--CCEEEEEcccCCCCC---CceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeec
Q 007111 43 KIPACRGHSLISW--GKKVLLVGGKTDSGS---DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGE 116 (617)
Q Consensus 43 ~~p~r~~hs~v~~--g~~lyV~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~ 116 (617)
++.+|.++++++. .+.|++|||....+. .++++|+||..+++|+++... +.|++|+.|.++++. +.+|+|||.
T Consensus 63 ~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGE 141 (521)
T KOG1230|consen 63 PPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGE 141 (521)
T ss_pred CCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEeccc
Confidence 3456777777765 468999999855443 368999999999999998643 568999999998886 899999996
Q ss_pred CC--CCC---ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC----CCCCCeEEEEECCCCcE
Q 007111 117 DG--KRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK----SKTLNDLYSLDFETMIW 187 (617)
Q Consensus 117 ~~--~~~---~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~----~~~~n~v~~yD~~t~~W 187 (617)
-. +.. -..++|+||+.+++|+++...| .|.+|+||.++++... |+||||+-. ..++|++|+||+.+-+|
T Consensus 142 faSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~-lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 142 FASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQ-LILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred cCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeee-EEEEcceecCCCceEEeeeeEEEeccceee
Confidence 33 211 3689999999999999997654 7999999999999988 999999843 35899999999999999
Q ss_pred EEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC---------CCccceEEEEECCC-----CcEEEeecCCCCCCCCCc
Q 007111 188 TRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR---------KKRHAETLIFDILK-----GEWSVAITSPSSSVTSNK 252 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~---------~~~~~~v~~yDl~~-----~~W~~l~~~~~~~p~~r~ 252 (617)
+.+.+.|..|.||++|++++. .+.|||.||++. +..++++|.+++.. ..|..+.. ....|.+|.
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp-~g~kPspRs 298 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP-SGVKPSPRS 298 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC-CCCCCCCCC
Confidence 999998888999999999988 999999999863 24578999999988 78999864 334588999
Q ss_pred ceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCcccc
Q 007111 253 GFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 253 ~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~ 293 (617)
++|+++.. ++.-+.|||... ...|+++.||+..+.|..
T Consensus 299 gfsv~va~---n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~ 346 (521)
T KOG1230|consen 299 GFSVAVAK---NHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSE 346 (521)
T ss_pred ceeEEEec---CCceEEecceecccccchhhhhhhhhhhhheecccchhhH
Confidence 99998887 467899999742 237999999999999955
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=257.06 Aligned_cols=276 Identities=24% Similarity=0.471 Sum_probs=225.2
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|+||||-+ .+..+++.+||..++.|...+.-. .-+|++..|.++..|.+||+|||...-+.+.+++|.+--
T Consensus 45 iviFGGGN-EGiiDELHvYNTatnqWf~PavrG--------DiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQa 115 (830)
T KOG4152|consen 45 IVIFGGGN-EGIIDELHVYNTATNQWFAPAVRG--------DIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQA 115 (830)
T ss_pred EEEecCCc-ccchhhhhhhccccceeecchhcC--------CCCCchhhcceEecCceEEEEccEeeeccccchHHHhhh
Confidence 68999954 458899999999999997665422 334566689999999999999999887778888887766
Q ss_pred CCCcEEEeec----cCCCCCCcceeEEEEECCEEEEEeecCCC--------CCccCeEEEEECCCC----cEEEeecCCC
Q 007111 81 ETECWSVVEA----KGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSL----TWLPLHCTGT 144 (617)
Q Consensus 81 ~t~~W~~~~~----~g~~P~~R~~~s~~~~~~~IYv~GG~~~~--------~~~~~~v~~yD~~t~----~W~~l~~~g~ 144 (617)
..-.|+++.+ .|..|++|.+|+...++++.|+|||.... ..|++++|++++.-. .|...-..|.
T Consensus 116 sRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv 195 (830)
T KOG4152|consen 116 SRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGV 195 (830)
T ss_pred hhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCC
Confidence 6667776643 46789999999999999999999997432 138999999998854 3998888899
Q ss_pred CCCCCcccEEEEEC-----CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 007111 145 GPSPRSNHVAALYD-----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 219 (617)
Q Consensus 145 ~P~~R~~h~a~~~~-----~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s 219 (617)
+|.+|-.|+++++- ...+|||||.++ ..+.++|.+|++|..|.++...|-.|.||+-|+++.+++++|||||..
T Consensus 196 ~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 196 LPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred CCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeecccccccCCCCCCcccccceeecceeEEeccee
Confidence 99999999999981 126999999975 468899999999999999999999999999999999999999999953
Q ss_pred CC--------------CccceEEEEECCCCcEEEeecCC---CCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-----
Q 007111 220 RK--------------KRHAETLIFDILKGEWSVAITSP---SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP----- 277 (617)
Q Consensus 220 ~~--------------~~~~~v~~yDl~~~~W~~l~~~~---~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~----- 277 (617)
.- ...+.+-++|+++..|..+.... ...|.+|.+|++++++ .++||.-|.+|..
T Consensus 275 Pl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAig----tRlYiWSGRDGYrKAwnn 350 (830)
T KOG4152|consen 275 PLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIG----TRLYIWSGRDGYRKAWNN 350 (830)
T ss_pred eeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEec----cEEEEEeccchhhHhhcc
Confidence 10 13456778999999999875322 1258899999999998 8899999988642
Q ss_pred ---CCeEEEEECCCCc
Q 007111 278 ---SNQVEVLSIEKNE 290 (617)
Q Consensus 278 ---~~dV~vyd~~~~~ 290 (617)
..|+|.+|.++..
T Consensus 351 QVCCkDlWyLdTekPp 366 (830)
T KOG4152|consen 351 QVCCKDLWYLDTEKPP 366 (830)
T ss_pred ccchhhhhhhcccCCC
Confidence 4677888877654
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=247.16 Aligned_cols=278 Identities=21% Similarity=0.349 Sum_probs=233.0
Q ss_pred CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeE
Q 007111 23 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT 102 (617)
Q Consensus 23 t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s 102 (617)
--+|..+.....+ .+.+|.+|-+|++..-|+||||.+. ...+.+.+||..++.|..-+.-|++|++...|.
T Consensus 16 ~~rWrrV~~~tGP-------vPrpRHGHRAVaikELiviFGGGNE--GiiDELHvYNTatnqWf~PavrGDiPpgcAA~G 86 (830)
T KOG4152|consen 16 VVRWRRVQQSTGP-------VPRPRHGHRAVAIKELIVIFGGGNE--GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFG 86 (830)
T ss_pred ccceEEEecccCC-------CCCccccchheeeeeeEEEecCCcc--cchhhhhhhccccceeecchhcCCCCCchhhcc
Confidence 3469888764332 2357789999999999999999643 456789999999999999888899999999999
Q ss_pred EEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeec----CCCCCCCCcccEEEEECCcEEEEEccCCC--------
Q 007111 103 VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC----TGTGPSPRSNHVAALYDDKNLLIFGGSSK-------- 170 (617)
Q Consensus 103 ~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~----~g~~P~~R~~h~a~~~~~~~LyV~GG~~~-------- 170 (617)
.+..+.+||+|||....++|+|++|-+......|+++.+ .|.+|.||.+|+-.+++++ .|+|||...
T Consensus 87 fvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnK-cYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 87 FVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNK-CYLFGGLANDSEDPKNN 165 (830)
T ss_pred eEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccE-eEEeccccccccCcccc
Confidence 999999999999999988999999999888889998844 3788999999999999998 999999742
Q ss_pred -CCCCCeEEEEECCC----CcEEEeecCCCCCCCCcceEEEEE---C---CEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 171 -SKTLNDLYSLDFET----MIWTRIKIRGFHPSPRAGCCGVLC---G---TKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 171 -~~~~n~v~~yD~~t----~~W~~~~~~g~~P~~R~~ha~v~~---~---~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
..++|++|.+++.. -.|......|..|.||..|+++.. + .++||+||.++ .++.++|.+|+++..|..
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeeccc
Confidence 24799999999864 359999888999999999999886 2 37999999874 578999999999999999
Q ss_pred eecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC-------------C--CCCeEEEEECCCCcccc-----------
Q 007111 240 AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------------E--PSNQVEVLSIEKNESSM----------- 293 (617)
Q Consensus 240 l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~-------------~--~~~dV~vyd~~~~~W~~----------- 293 (617)
... ....|.+|.-|+++.++ +++|||||+-- + ..+.+-++++.+..|..
T Consensus 245 p~~-~G~~PlPRSLHsa~~IG----nKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~ti 319 (830)
T KOG4152|consen 245 PSL-SGVAPLPRSLHSATTIG----NKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTI 319 (830)
T ss_pred ccc-cCCCCCCcccccceeec----ceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccc
Confidence 653 45678899999999998 88999999721 1 14778889999999943
Q ss_pred ---ccccccCccCCceeeeccCCCCc
Q 007111 294 ---GRRSTPNAKGPGQLLFEKRSSST 316 (617)
Q Consensus 294 ---~w~~~~~~~~~~v~vfGG~~~~~ 316 (617)
+-.||+.+++.++|++.|+-+|.
T Consensus 320 PR~RAGHCAvAigtRlYiWSGRDGYr 345 (830)
T KOG4152|consen 320 PRARAGHCAVAIGTRLYIWSGRDGYR 345 (830)
T ss_pred ccccccceeEEeccEEEEEeccchhh
Confidence 45678888899999999986643
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=183.66 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=179.2
Q ss_pred CCCCcceeEEEEEC------CEEEEEeecCCCCCccCeEEEEECCCCc--------EEEeecCCCCCCCCcccEEEEE--
Q 007111 94 IPVARSGHTVVRAS------SVLILFGGEDGKRRKLNDLHMFDLKSLT--------WLPLHCTGTGPSPRSNHVAALY-- 157 (617)
Q Consensus 94 ~P~~R~~~s~~~~~------~~IYv~GG~~~~~~~~~~v~~yD~~t~~--------W~~l~~~g~~P~~R~~h~a~~~-- 157 (617)
+|+.|+.+.+..-+ ..++++||++++++.++++|++...+.. ..+-...|++|.+||+|++.++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 78888887766622 2788999999999999999999887654 2333455999999999999887
Q ss_pred -CCcEEEEEccCCCCC--------------CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 007111 158 -DDKNLLIFGGSSKSK--------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 222 (617)
Q Consensus 158 -~~~~LyV~GG~~~~~--------------~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~ 222 (617)
++..+++|||++... +...||.+|++.+.++.... +++..+.++|.+.+.+|.+||+||++-..
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 344789999986432 46789999999999987765 56788999999999999999999998665
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCC------------CeEEEEECCCCc
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS------------NQVEVLSIEKNE 290 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~------------~dV~vyd~~~~~ 290 (617)
.......|.++.+.-...+...+.........+++++...+.+.++|+|||..+.. +.|.+-..+..+
T Consensus 178 d~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~ 257 (337)
T PF03089_consen 178 DSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPE 257 (337)
T ss_pred CCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCC
Confidence 54444444443332222222333445677788888888888899999999976541 456666678889
Q ss_pred cccccccccCccCCceeeeccCCCCcccccccCCCCCCCCCchhhhhhhHhHH
Q 007111 291 SSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAI 343 (617)
Q Consensus 291 W~~~w~~~~~~~~~~v~vfGG~~~~~~~~~~~~~~~~~~~~~s~~r~~~~~~~ 343 (617)
|+....+..+ ||||+++ +++.+..+|+..|+..+|+.
T Consensus 258 Wt~dI~hSrt-------WFGgs~G---------~G~~Li~iP~e~~~~~~da~ 294 (337)
T PF03089_consen 258 WTGDIKHSRT-------WFGGSMG---------KGSALIGIPSEGRQAPSDAY 294 (337)
T ss_pred CCCCcCcCcc-------ccccccC---------CceEEEEECCCCCCCCCCce
Confidence 9999888888 9999988 88889999999888776664
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=149.92 Aligned_cols=249 Identities=19% Similarity=0.325 Sum_probs=174.5
Q ss_pred ceEEEEECCCC--cEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCC----CceEEEEEECCCCcEEE
Q 007111 14 DDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS----DRVSVWTFDTETECWSV 87 (617)
Q Consensus 14 ~~v~~yd~~t~--~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~----~~~~v~~yd~~t~~W~~ 87 (617)
.+.+..|+... .|++++. .|..+|.+...+.++++||||||...... ..+++|+|||.+++|.+
T Consensus 58 ~afy~ldL~~~~k~W~~~a~----------FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~k 127 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIAD----------FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHK 127 (381)
T ss_pred ccceehhhhcCCCCceEccc----------CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhhe
Confidence 46788888654 6999998 88889998899999999999999843322 35789999999999999
Q ss_pred eeccCCCCCCcceeEEEEECC-EEEEEeecCCC---------------------------------CCccCeEEEEECCC
Q 007111 88 VEAKGDIPVARSGHTVVRASS-VLILFGGEDGK---------------------------------RRKLNDLHMFDLKS 133 (617)
Q Consensus 88 ~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~---------------------------------~~~~~~v~~yD~~t 133 (617)
+.+ ..|....+++++.+++ +||++||.+.. ......+..|+|.+
T Consensus 128 l~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~ 205 (381)
T COG3055 128 LDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPST 205 (381)
T ss_pred ecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccccc
Confidence 987 4577788899999887 99999997510 11467799999999
Q ss_pred CcEEEeecCCCCC-CCCcccEEEEECCcEEEEEccC-CCCCCCCeEEEEECC--CCcEEEeecCCCCC----CCCcceEE
Q 007111 134 LTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGS-SKSKTLNDLYSLDFE--TMIWTRIKIRGFHP----SPRAGCCG 205 (617)
Q Consensus 134 ~~W~~l~~~g~~P-~~R~~h~a~~~~~~~LyV~GG~-~~~~~~n~v~~yD~~--t~~W~~~~~~g~~P----~~R~~ha~ 205 (617)
++|+.+ |..| .++++++.+.-+++ +.++-|. ........++++++. .-+|..+...+.++ .+..++-.
T Consensus 206 n~W~~~---G~~pf~~~aGsa~~~~~n~-~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~ 281 (381)
T COG3055 206 NQWRNL---GENPFYGNAGSAVVIKGNK-LTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFS 281 (381)
T ss_pred chhhhc---CcCcccCccCcceeecCCe-EEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceecc
Confidence 999987 4444 56777555544555 5555554 455566778888875 56799886653221 22223333
Q ss_pred EEECCEEEEEecCCC-------------------CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcE
Q 007111 206 VLCGTKWYIAGGGSR-------------------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDF 266 (617)
Q Consensus 206 v~~~~~IyI~GG~s~-------------------~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~ 266 (617)
-..++.+.+.||.+- ..+.+++|.+| .+.|..+..+ |.++ ++++.+.. .+.
T Consensus 282 G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL----p~~l-~YG~s~~~---nn~ 351 (381)
T COG3055 282 GKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL----PQGL-AYGVSLSY---NNK 351 (381)
T ss_pred ceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc----CCCc-cceEEEec---CCc
Confidence 334788888888531 12457888888 8999998744 3333 33333333 377
Q ss_pred EEEEcCCCC--CCCCeEEEEECCC
Q 007111 267 LVAFGGIKK--EPSNQVEVLSIEK 288 (617)
Q Consensus 267 L~I~GG~~~--~~~~dV~vyd~~~ 288 (617)
||++||.+. .....|+.+....
T Consensus 352 vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 352 VLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred EEEEccccCCCeeeeeEEEEEEcC
Confidence 999999864 3356666655443
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-15 Score=159.49 Aligned_cols=271 Identities=21% Similarity=0.323 Sum_probs=186.5
Q ss_pred CCCCcEEEccccccCCCCCCCCCCCcccceEEEEECC--EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCc
Q 007111 21 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK--KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 98 (617)
Q Consensus 21 ~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~--~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R 98 (617)
+.+.+|..+....--. ......+..|.||.+|...+ .||++|||+ +-..+.++|.|+...+.|..+...+..|..|
T Consensus 236 ey~~~W~~i~~~~~~~-~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKG-DGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred cccccccccCchhhcc-cccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 3466798876532100 01113455788999998855 899999994 4556889999999999999998887899999
Q ss_pred ceeEEEEECC--EEEEEeecCCCC-----CccCeEEEEECCCCcEEEeecC---CCCCCCCcccEEEEECCc-EEEEEcc
Q 007111 99 SGHTVVRASS--VLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDK-NLLIFGG 167 (617)
Q Consensus 99 ~~~s~~~~~~--~IYv~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~~~~-~LyV~GG 167 (617)
++|-++..-. ++|+.|-+-+.. ..-+++|+||..++.|..+... ...|...+.|.+++.+++ ++|||||
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 9999988766 999999864421 1458899999999999988432 235888999999998766 7999999
Q ss_pred CCC---CCCCCeEEEEECCCCcEEEeecCCC-------CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 168 SSK---SKTLNDLYSLDFETMIWTRIKIRGF-------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 168 ~~~---~~~~n~v~~yD~~t~~W~~~~~~g~-------~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+.- ...+..+|.||.....|..+...-. ....|.+|++-++ +..+|++||......++-...||+...
T Consensus 394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E 473 (723)
T KOG2437|consen 394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSE 473 (723)
T ss_pred eeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccc
Confidence 853 3567789999999999987653211 1245778877555 678999999876665555556665433
Q ss_pred cEEEeec--CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC-------CCCCeEEEEECCCCcccc
Q 007111 236 EWSVAIT--SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 236 ~W~~l~~--~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~-------~~~~dV~vyd~~~~~W~~ 293 (617)
.-..+.. ....+..+-.++..-.+.....+.|.+.-|... ...+.+|+|++.++.|.-
T Consensus 474 ~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c 540 (723)
T KOG2437|consen 474 HVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC 540 (723)
T ss_pred cchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence 2211110 011111122223322333334466666666542 236889999999999843
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=138.88 Aligned_cols=258 Identities=18% Similarity=0.232 Sum_probs=181.4
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCC
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDG 118 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~ 118 (617)
+|.+-.. -+-+.+++.+||-=|. . -...|..|++. ..|+.++ ..| .+|.+.++++++++||+|||...
T Consensus 33 lPvg~Kn-G~Ga~ig~~~YVGLGs-~----G~afy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 33 LPVGFKN-GAGALIGDTVYVGLGS-A----GTAFYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred CCccccc-cccceecceEEEEecc-C----CccceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeecccc
Confidence 4444443 3566778899987563 1 13578888875 4699998 566 57999999999999999999754
Q ss_pred CC----CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC----------------------
Q 007111 119 KR----RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---------------------- 172 (617)
Q Consensus 119 ~~----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~---------------------- 172 (617)
.. ...+++|+|||.+++|+++.+ ..|....+++++.+++..+|++||.....
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 32 368999999999999999974 35677889999999996699999974210
Q ss_pred ------------CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC-CCCccceEEEEECCC--CcE
Q 007111 173 ------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILK--GEW 237 (617)
Q Consensus 173 ------------~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s-~~~~~~~v~~yDl~~--~~W 237 (617)
...+++.|||.+..|+.+... +-.++++.+.+.-++++.++-|.- ...+...++++++.. .+|
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w 259 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKW 259 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcC--cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceee
Confidence 256799999999999988644 345777766666688788887754 345667788888764 579
Q ss_pred EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC--------------------CCCCeEEEEECCCCccccc---
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--------------------EPSNQVEVLSIEKNESSMG--- 294 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~--------------------~~~~dV~vyd~~~~~W~~~--- 294 (617)
..+...|........+..-..- ....+.+++.||.+- ...++|+++| .+.|...
T Consensus 260 ~~l~~lp~~~~~~~eGvAGaf~-G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeL 336 (381)
T COG3055 260 LKLSDLPAPIGSNKEGVAGAFS-GKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGEL 336 (381)
T ss_pred eeccCCCCCCCCCccccceecc-ceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeeccc
Confidence 9987655443323233332222 233578888898631 0147899998 7778442
Q ss_pred ----cccccCccCCceeeeccCCCC
Q 007111 295 ----RRSTPNAKGPGQLLFEKRSSS 315 (617)
Q Consensus 295 ----w~~~~~~~~~~v~vfGG~~~~ 315 (617)
.--+.....+.++++||-...
T Consensus 337 p~~l~YG~s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 337 PQGLAYGVSLSYNNKVLLIGGETSG 361 (381)
T ss_pred CCCccceEEEecCCcEEEEccccCC
Confidence 122233367889999998653
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-14 Score=147.31 Aligned_cols=203 Identities=22% Similarity=0.371 Sum_probs=156.2
Q ss_pred CCcEEEeeccC-------CCCCCcceeEEEEECC--EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 82 TECWSVVEAKG-------DIPVARSGHTVVRASS--VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 82 t~~W~~~~~~g-------~~P~~R~~~s~~~~~~--~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
+..|.+++.+. ..|..|.||.++...+ .||++||.++.. .+.++|.|+...+.|+.+..-+..|..|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 45788877654 4688999999999865 999999999975 5899999999999999997767789999999
Q ss_pred EEEEECC-cEEEEEccCCCC------CCCCeEEEEECCCCcEEEeecCCC---CCCCCcceEEEEECCE--EEEEecCCC
Q 007111 153 VAALYDD-KNLLIFGGSSKS------KTLNDLYSLDFETMIWTRIKIRGF---HPSPRAGCCGVLCGTK--WYIAGGGSR 220 (617)
Q Consensus 153 ~a~~~~~-~~LyV~GG~~~~------~~~n~v~~yD~~t~~W~~~~~~g~---~P~~R~~ha~v~~~~~--IyI~GG~s~ 220 (617)
.++..-. ..+|+.|-+-+. .-..++|+||..++.|.-+..... -|...+.|.+++.+++ +||+||+.-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 9998754 239999987432 235689999999999998764211 3666788999999877 999999864
Q ss_pred C---CccceEEEEECCCCcEEEeecCC------CCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECC
Q 007111 221 K---KRHAETLIFDILKGEWSVAITSP------SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIE 287 (617)
Q Consensus 221 ~---~~~~~v~~yDl~~~~W~~l~~~~------~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~ 287 (617)
. ..+.-+|.||.....|..+.... ......|.+|++-... +...+|+|||..... ++-.+.|++.
T Consensus 397 ~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~--~n~~ly~fggq~s~~El~L~f~y~I~ 471 (723)
T KOG2437|consen 397 TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHS--KNRCLYVFGGQRSKTELNLFFSYDID 471 (723)
T ss_pred cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcC--CCCeEEeccCcccceEEeehhcceec
Confidence 3 34567999999999998764311 2235577888877665 468899999986543 4445556554
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-09 Score=82.58 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=45.8
Q ss_pred CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 97 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149 (617)
Q Consensus 97 ~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 149 (617)
+|.+|++++++++|||+||.......++++++||+.+++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999885568999999999999999994 899887
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=82.40 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=44.7
Q ss_pred cccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCc
Q 007111 46 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 98 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R 98 (617)
+|.+|++|+++++||||||........+++++||+.+++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 46789999999999999999765667889999999999999998 888877
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=107.35 Aligned_cols=89 Identities=18% Similarity=0.336 Sum_probs=77.6
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~ 174 (617)
+.++.+++++.+++++||+||.+..+..++.+|+||..+++|....+.|..|.+|.+|++|++++.+|+|+++.+...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 558899999999999999999988665789999999999999999889999999999999999776699998776542
Q ss_pred CeEEEEECCCC
Q 007111 175 NDLYSLDFETM 185 (617)
Q Consensus 175 n~v~~yD~~t~ 185 (617)
.++|.+...|.
T Consensus 100 ~~~w~l~~~t~ 110 (398)
T PLN02772 100 DSIWFLEVDTP 110 (398)
T ss_pred cceEEEEcCCH
Confidence 66888877664
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=76.33 Aligned_cols=48 Identities=42% Similarity=0.762 Sum_probs=43.0
Q ss_pred CCEEEEEeecC-CCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 107 SSVLILFGGED-GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 107 ~~~IYv~GG~~-~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
+++||||||.+ .....++++|+||+.+++|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 4556899999999999999998 689999999999874
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.1e-08 Score=103.71 Aligned_cols=88 Identities=19% Similarity=0.309 Sum_probs=76.6
Q ss_pred CCCCCCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCC
Q 007111 144 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 221 (617)
Q Consensus 144 ~~P~~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~ 221 (617)
--+.++..++++.++++ +|||||..... .++.+++||..+.+|..+...|.+|.||.+|+++.+ +++|+|+++.+..
T Consensus 20 ~~~~~~~~~tav~igdk-~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 20 FGVKPKNRETSVTIGDK-TYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred ccCCCCCcceeEEECCE-EEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 34568899999999999 99999987654 789999999999999999999999999999999998 7899999976544
Q ss_pred CccceEEEEECCC
Q 007111 222 KRHAETLIFDILK 234 (617)
Q Consensus 222 ~~~~~v~~yDl~~ 234 (617)
. +++|++.+++
T Consensus 99 ~--~~~w~l~~~t 109 (398)
T PLN02772 99 D--DSIWFLEVDT 109 (398)
T ss_pred c--cceEEEEcCC
Confidence 2 6788888765
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-08 Score=73.89 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=40.6
Q ss_pred CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEee
Q 007111 97 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 140 (617)
Q Consensus 97 ~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 140 (617)
+|++|++++++++||++||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 58999999999999999999986678999999999999999985
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-08 Score=74.66 Aligned_cols=48 Identities=40% Similarity=0.812 Sum_probs=42.3
Q ss_pred CCEEEEEcccC-CCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE
Q 007111 56 GKKVLLVGGKT-DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 106 (617)
Q Consensus 56 g~~lyV~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~ 106 (617)
|++||||||.. ......+++|+||+.+++|+.++ ++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 68999999997 35667789999999999999995 89999999999864
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-08 Score=73.24 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=39.9
Q ss_pred cccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 46 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
+|.+|++++++++|||+||........+++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 47789999999999999999775777899999999999999998
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-08 Score=73.27 Aligned_cols=47 Identities=38% Similarity=0.730 Sum_probs=32.2
Q ss_pred CcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCC
Q 007111 97 ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 146 (617)
Q Consensus 97 ~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 146 (617)
+|++|+++.+ ++.||||||.+..+..++++|+||+.+++|+++ +++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~---~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL---PSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC---CCCC
Confidence 5899999998 489999999998877899999999999999999 3666
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.6e-08 Score=72.79 Aligned_cols=47 Identities=34% Similarity=0.715 Sum_probs=31.4
Q ss_pred cccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC
Q 007111 46 ACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP 95 (617)
Q Consensus 46 ~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P 95 (617)
+|.+|+++.+ +++||||||.......++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 4778999998 5899999999776678899999999999999996 555
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-07 Score=70.08 Aligned_cols=44 Identities=36% Similarity=0.696 Sum_probs=39.2
Q ss_pred cccceEEEEECCEEEEEccc--CCCCCCceEEEEEECCCCcEEEee
Q 007111 46 ACRGHSLISWGKKVLLVGGK--TDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 46 ~r~~hs~v~~g~~lyV~GG~--~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
+|.+|++++++++||||||. .......+++++||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 47789999999999999999 445567789999999999999997
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-07 Score=70.33 Aligned_cols=45 Identities=36% Similarity=0.649 Sum_probs=41.0
Q ss_pred CCcccEEEEECCcEEEEEccC---CCCCCCCeEEEEECCCCcEEEeecC
Q 007111 148 PRSNHVAALYDDKNLLIFGGS---SKSKTLNDLYSLDFETMIWTRIKIR 193 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~---~~~~~~n~v~~yD~~t~~W~~~~~~ 193 (617)
+|++|++++++++ ||||||+ ......++++.||+++.+|+.+..+
T Consensus 1 ~r~~hs~~~~~~k-iyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGK-IYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCE-EEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 6899999999999 9999999 4567899999999999999998775
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-05 Score=79.23 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=98.3
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCC----CcEEEeecCCCCCC
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPS 147 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t----~~W~~l~~~g~~P~ 147 (617)
..-..||+.+++++.+.. +.--.+.+.+ .-+|.+++.||.... ...+..|++.+ ..|.+.. ..|..
T Consensus 46 a~s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~~ 116 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQS 116 (243)
T ss_pred EEEEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--ccccC
Confidence 346789999999998863 3333333333 346899999998653 35677888865 5798874 35889
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECC-C-----CcEEEeecCC-CCCCCCcceEEEEECCEEEEEecCCC
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-T-----MIWTRIKIRG-FHPSPRAGCCGVLCGTKWYIAGGGSR 220 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~-t-----~~W~~~~~~g-~~P~~R~~ha~v~~~~~IyI~GG~s~ 220 (617)
+|-..+++...+..++|+||.... .+.|-+. . ..|..+.... ..+..-+=+..+.-+++||+++..
T Consensus 117 ~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-- 189 (243)
T PF07250_consen 117 GRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-- 189 (243)
T ss_pred CCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--
Confidence 998888888865559999998732 2333332 1 1222222110 112233334444459999999884
Q ss_pred CCccceEEEEECCCCcE-EEeecCCCC
Q 007111 221 KKRHAETLIFDILKGEW-SVAITSPSS 246 (617)
Q Consensus 221 ~~~~~~v~~yDl~~~~W-~~l~~~~~~ 246 (617)
..++||..++++ ..++..|..
T Consensus 190 -----~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 -----GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred -----CcEEEeCCCCeEEeeCCCCCCC
Confidence 357899999977 677765544
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=64.56 Aligned_cols=41 Identities=39% Similarity=0.658 Sum_probs=36.9
Q ss_pred CCCCcceeEEEEECCEEEEEeecCC-CCCccCeEEEEECCCC
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSL 134 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~-~~~~~~~v~~yD~~t~ 134 (617)
+|.+|.+|++++++++|||+||.+. ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 6668999999999874
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.3e-05 Score=75.68 Aligned_cols=158 Identities=22% Similarity=0.282 Sum_probs=100.2
Q ss_pred EEEEcccCCCCCCceEEEEEECCCCc--------EEEeeccCCCCCCcceeEEEEEC----CEEEEEeecCCC--C----
Q 007111 59 VLLVGGKTDSGSDRVSVWTFDTETEC--------WSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGK--R---- 120 (617)
Q Consensus 59 lyV~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~P~~R~~~s~~~~~----~~IYv~GG~~~~--~---- 120 (617)
.+|.||.+++..-.+.+|+....+.. .......|++|.+|++|++.++. .-+.+|||+... +
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 55668988777777788887765432 33444458999999999998873 378899998531 1
Q ss_pred -------CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC--CCCCCeEEEEECCCC---cEE
Q 007111 121 -------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETM---IWT 188 (617)
Q Consensus 121 -------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~--~~~~n~v~~yD~~t~---~W~ 188 (617)
.....|+.+|+.-..++... ...+..+.+.|.+..-+|. +|++||..- +.....++++..+-- -+-
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~-VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDC-VYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred hhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCce-EEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 13456888999887776542 2345567777888887888 999999853 334455666654311 111
Q ss_pred EeecCCCCCCCCcceEEEE--E-CCEEEEEecCCCC
Q 007111 189 RIKIRGFHPSPRAGCCGVL--C-GTKWYIAGGGSRK 221 (617)
Q Consensus 189 ~~~~~g~~P~~R~~ha~v~--~-~~~IyI~GG~s~~ 221 (617)
..... +.+.+..++++ . .+..+|+||+..+
T Consensus 199 sC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 199 SCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred EEEEC---CCCceEeeeeEeecCCCceEEEeccccc
Confidence 11111 33333333332 2 4567888997543
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=64.72 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=40.9
Q ss_pred EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
+||++||.... ...+++++||+.+++|+.++ +||.+|+.|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998763 46899999999999999884 8999999999988764
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00065 Score=68.29 Aligned_cols=207 Identities=12% Similarity=0.116 Sum_probs=111.7
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcce-eEEEEEC----C-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCC
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSG-HTVVRAS----S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 147 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~~----~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~ 147 (617)
.++++||.|+.|..+|.....+..... .....++ . +|..+....... ....+++|+..++.|+.+.. ..+.
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~--~~~~ 91 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIEC--SPPH 91 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCcccccc--CCCC
Confidence 699999999999999732110000111 1112222 1 555554432211 34578999999999999852 1222
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-eecCCCCCCCCcceEEEEECCEEEEEecCCCCCccce
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAE 226 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~ 226 (617)
.......+.++|. +|-+...........|..||+.+.+|.. ++.............++.+++++.++...... ..-+
T Consensus 92 ~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~~~~ 169 (230)
T TIGR01640 92 HPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT-NNFD 169 (230)
T ss_pred ccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCC-CcEE
Confidence 1222236677888 6666543221111269999999999995 43311000112234566678998887654321 2257
Q ss_pred EEEEE-CCCCcEEEeecCCCCC-CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 227 TLIFD-ILKGEWSVAITSPSSS-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 227 v~~yD-l~~~~W~~l~~~~~~~-p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
+|+++ -....|+..-..+... +.....+...-+. +++.|++..+.. ..--+.+||+.++
T Consensus 170 IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~--~~g~I~~~~~~~--~~~~~~~y~~~~~ 230 (230)
T TIGR01640 170 LWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFT--DKGEIVLCCEDE--NPFYIFYYNVGEN 230 (230)
T ss_pred EEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEe--eCCEEEEEeCCC--CceEEEEEeccCC
Confidence 89886 3356799876554321 1111111111222 235666655431 1114889998775
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-06 Score=63.06 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.5
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~ 210 (617)
|||+||.......+++++||+.+++|+.++++ |.+|..|+++.+++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 89999998767789999999999999998765 88999999887764
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-06 Score=61.73 Aligned_cols=39 Identities=44% Similarity=0.714 Sum_probs=35.3
Q ss_pred CCCCCcccEEEEECCcEEEEEccCC--CCCCCCeEEEEECCC
Q 007111 145 GPSPRSNHVAALYDDKNLLIFGGSS--KSKTLNDLYSLDFET 184 (617)
Q Consensus 145 ~P~~R~~h~a~~~~~~~LyV~GG~~--~~~~~n~v~~yD~~t 184 (617)
+|.+|++|++++++++ ||||||.+ ....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~-iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNN-IYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCE-EEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999999988 99999998 477899999999875
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0036 Score=62.92 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=113.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcc--cceEEEE-ECC-EEEEEcccCCCCCCceEEEEEECCCCcEEEee
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC--RGHSLIS-WGK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r--~~hs~v~-~g~-~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 89 (617)
..+.++||.|.+|..++.... + ...+.+ .+++... .+. +|+.+..... ......+.+|+..++.|+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~--~----~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKS--R----RSNKESDTYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCCC--c----ccccccceEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCccccc
Confidence 578999999999999975210 0 001111 1111111 122 4555544311 113357899999999999987
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCCCCCCCCc----ccEEEEECCcEEEE
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRS----NHVAALYDDKNLLI 164 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~----~h~a~~~~~~~LyV 164 (617)
.. .+........+.++|.+|-+.-..... ....+..||+.+.+|.. ++ +|..+. ....+.++++ |.+
T Consensus 87 ~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~-L~~ 158 (230)
T TIGR01640 87 CS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGK-LAV 158 (230)
T ss_pred cC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCE-EEE
Confidence 32 121111222667899888887543321 12369999999999995 63 343332 3355666777 766
Q ss_pred EccCCCCCCCCeEEEEE-CCCCcEEEeecCCCCCCCCc----ceEEEEECCEEEEEecCCCCCccceEEEEECCCC
Q 007111 165 FGGSSKSKTLNDLYSLD-FETMIWTRIKIRGFHPSPRA----GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD-~~t~~W~~~~~~g~~P~~R~----~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+....... .-+||+.+ .....|++.-..+.++.+.. ....+..++.|++..+.. . ..-+..||+.++
T Consensus 159 v~~~~~~~-~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~--~~~~~~y~~~~~ 230 (230)
T TIGR01640 159 LKQKKDTN-NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N--PFYIFYYNVGEN 230 (230)
T ss_pred EEecCCCC-cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C--ceEEEEEeccCC
Confidence 65443211 13677775 44667998654321122211 123444578888876531 0 113788888764
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00083 Score=68.21 Aligned_cols=143 Identities=16% Similarity=0.101 Sum_probs=87.1
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC----CcEEEeecCCCCCCCC
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET----MIWTRIKIRGFHPSPR 200 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t----~~W~~~~~~g~~P~~R 200 (617)
-..||+.+++++.+.+ +..-...+.+.. +++ ++++||...+ ...+-.|++.+ ..|.+.... +..+|
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~-ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGR-LLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCC-EEEeCCCCcc--ccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 4679999999998853 232222233333 555 9999998653 34567788754 678877642 47899
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccceEEEEECCC-----CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 201 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 201 ~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-----~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
...++..+ +++++|+||..... ...+.... ..|..+.......+ ...+.-+.++. +++||+++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~t----~E~~P~~~~~~~~~~~~~l~~~~~~~~-~nlYP~~~llP---dG~lFi~an~- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNPT----YEFWPPKGPGPGPVTLPFLSQTSDTLP-NNLYPFVHLLP---DGNLFIFANR- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCCCc----ccccCCccCCCCceeeecchhhhccCc-cccCceEEEcC---CCCEEEEEcC-
Confidence 98888887 88999999987321 22223211 12222221111111 22222333443 4779999986
Q ss_pred CCCCCeEEEEECCCCcc
Q 007111 275 KEPSNQVEVLSIEKNES 291 (617)
Q Consensus 275 ~~~~~dV~vyd~~~~~W 291 (617)
.-.+||..++++
T Consensus 190 -----~s~i~d~~~n~v 201 (243)
T PF07250_consen 190 -----GSIIYDYKTNTV 201 (243)
T ss_pred -----CcEEEeCCCCeE
Confidence 347889999876
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.32 Score=52.98 Aligned_cols=220 Identities=16% Similarity=0.161 Sum_probs=116.8
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||..+++ |..-..... .. .+...+.+...+.+..+++||+.+.. ..++.||..+.+ |+.-.
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~-~~--~~~~~~~~~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKD-GW--FSKNKSALLSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcc-cc--cccccccccccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC
Confidence 368999987554 975432100 00 00011222233456678899875321 369999998764 96543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCC--CCcccEEEEECCcEEEEE
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPS--PRSNHVAALYDDKNLLIF 165 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~--~R~~h~a~~~~~~~LyV~ 165 (617)
. .. ...+-++.++.+|+..+ ...++.||+.+.+ |+.-. ..|. .+...+-++.++. +|+.
T Consensus 149 ~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~-v~~~ 211 (394)
T PRK11138 149 A-----GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNL---DVPSLTLRGESAPATAFGG-AIVG 211 (394)
T ss_pred C-----Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecC---CCCcccccCCCCCEEECCE-EEEE
Confidence 1 11 11223445778887432 2469999998876 88642 1121 1212233344554 5553
Q ss_pred ccCCCCCCCCeEEEEECCCC--cEEEeecCCC--CCC---CCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc--
Q 007111 166 GGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPS---PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE-- 236 (617)
Q Consensus 166 GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~--~P~---~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~-- 236 (617)
..+ ..++.+|+.++ .|+.....+. ... .....+-+..++.+|+.+. . ..++.+|+.+.+
T Consensus 212 -~~~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~ 279 (394)
T PRK11138 212 -GDN-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIV 279 (394)
T ss_pred -cCC-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEE
Confidence 332 34888888776 4764322110 000 0111233456888888653 1 358999998764
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
|+.-. ..+ ...++. .+.||+.... ..++.+|+.+.+
T Consensus 280 W~~~~----~~~-----~~~~~~----~~~vy~~~~~-----g~l~ald~~tG~ 315 (394)
T PRK11138 280 WKREY----GSV-----NDFAVD----GGRIYLVDQN-----DRVYALDTRGGV 315 (394)
T ss_pred EeecC----CCc-----cCcEEE----CCEEEEEcCC-----CeEEEEECCCCc
Confidence 87631 111 112222 3677775532 368888887654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.34 Score=52.19 Aligned_cols=211 Identities=16% Similarity=0.170 Sum_probs=110.4
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||+.+++ |..-... ....+.+..++.+|+.+.. ..++.||+.+.+ |+...
T Consensus 75 g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 75 GTVVALDAETGKRLWRVDLDE--------------RLSGGVGADGGLVFVGTEK-------GEVIALDAEDGKELWRAKL 133 (377)
T ss_pred CeEEEEEccCCcEeeeecCCC--------------CcccceEEcCCEEEEEcCC-------CEEEEEECCCCcEeeeecc
Confidence 369999987655 8654321 1112234457777764321 369999987764 86543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEcc
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG 167 (617)
+.. ...+.+..++.+|+..+ ...++.+|+.+.+ |+.-.. .+....+...+.+..++. + ++|.
T Consensus 134 -----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~~~~~-v-~~~~ 197 (377)
T TIGR03300 134 -----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRV-TPALTLRGSASPVIADGG-V-LVGF 197 (377)
T ss_pred -----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccC-CCceeecCCCCCEEECCE-E-EEEC
Confidence 111 11223345677777432 2458999998764 875421 111011222333444543 4 4554
Q ss_pred CCCCCCCCeEEEEECCCC--cEEEeecCCC--CCCCC---cceEEEEECCEEEEEecCCCCCccceEEEEECCCC--cEE
Q 007111 168 SSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSPR---AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--EWS 238 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~--~W~~~~~~g~--~P~~R---~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~ 238 (617)
.++ .++.+|+.++ .|+.-...+. ....+ ...+.+..++.+|+.+.. ..++.||+.+. .|.
T Consensus 198 ~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 198 AGG-----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWK 266 (377)
T ss_pred CCC-----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEe
Confidence 332 5899998775 4764322100 00001 112334458888886532 35899998765 376
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.-. + ..+..++. ++.||+... ...++++|..+.+
T Consensus 267 ~~~--~--------~~~~p~~~---~~~vyv~~~-----~G~l~~~d~~tG~ 300 (377)
T TIGR03300 267 RDA--S--------SYQGPAVD---DNRLYVTDA-----DGVVVALDRRSGS 300 (377)
T ss_pred ecc--C--------CccCceEe---CCEEEEECC-----CCeEEEEECCCCc
Confidence 621 1 11112222 366776542 2368888887653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.43 Score=51.94 Aligned_cols=210 Identities=18% Similarity=0.204 Sum_probs=112.9
Q ss_pred ceEEEEECCCC--cEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~--~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|..++ .|+.-... +. ..+-+..++.+|+..+. ..++.||+.+.+ |+.-.
T Consensus 130 g~l~ald~~tG~~~W~~~~~~------------~~--~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAG------------EA--LSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CEEEEEECCCCCCcccccCCC------------ce--ecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecC
Confidence 36899998665 48654321 11 12234557888875432 269999998876 87653
Q ss_pred ccCCCCC--CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeec--CCCCCCCC---cccEEEEECCc
Q 007111 90 AKGDIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHC--TGTGPSPR---SNHVAALYDDK 160 (617)
Q Consensus 90 ~~g~~P~--~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~--~g~~P~~R---~~h~a~~~~~~ 160 (617)
..|. .+...+-+..++.+|+..+ ...++.+|+.+.+ |+.-.. .+.....| ...+-++.++.
T Consensus 189 ---~~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 189 ---DVPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred ---CCCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE
Confidence 1221 1222233445667666432 2357888988765 874210 00000001 11233345665
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC--c
Q 007111 161 NLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--E 236 (617)
Q Consensus 161 ~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~--~ 236 (617)
+|+.+. + ..++.+|+.+++ |+.... .+ ...+..++.||+.... ..++.+|+.+. .
T Consensus 259 -vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~ 317 (394)
T PRK11138 259 -VYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVEL 317 (394)
T ss_pred -EEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEE
Confidence 777543 2 359999998764 875321 11 1235568999987532 35899998876 4
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
|+.-.. ..+...+.++. ++.||+ |..+ ..++++|..+.+
T Consensus 318 W~~~~~------~~~~~~sp~v~----~g~l~v-~~~~----G~l~~ld~~tG~ 356 (394)
T PRK11138 318 WSQSDL------LHRLLTAPVLY----NGYLVV-GDSE----GYLHWINREDGR 356 (394)
T ss_pred Eccccc------CCCcccCCEEE----CCEEEE-EeCC----CEEEEEECCCCC
Confidence 765210 11111222232 256654 3332 257778877664
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.34 Score=48.90 Aligned_cols=211 Identities=11% Similarity=0.045 Sum_probs=113.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++.+++.+..-..+.. +.. .+++.. ++.+|+.... ...++|+.+..++.+...
T Consensus 22 ~~i~~~~~~~~~~~~~~~-------------~~~--~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDL-------------PGP--NGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp TEEEEEETTTTEEEEEES-------------SSE--EEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEE
T ss_pred CEEEEEECCCCeEEEEec-------------CCC--ceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeec
Confidence 468889998887655443 112 334443 6888888653 256679999999888743
Q ss_pred --CCCCCCcceeEEEEECCEEEEEeecCCCCCcc--CeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEc
Q 007111 92 --GDIPVARSGHTVVRASSVLILFGGEDGKRRKL--NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFG 166 (617)
Q Consensus 92 --g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~--~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~G 166 (617)
+..+..+..-.++--++.||+-.-........ ..+|++++. .+...+.. .+.. --+.++. +++.||+.-
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~---pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGF---PNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESS---EEEEEEETTSSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Cccc---ccceEECCcchheeecc
Confidence 11133444444444467877754322211112 679999998 66665531 1211 1244444 455577743
Q ss_pred cCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcce-EEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 167 GSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGC-CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t--~~W~~~~~~g~~P~~R~~h-a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
-. .+.|++|++.. ..+.........+...... .++.. +++||+..-.. ..+++||+.......+..
T Consensus 153 s~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 153 SF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp TT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TEEEEEETTSCEEEEEE-
T ss_pred cc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CEEEEECCCccEEEEEcC
Confidence 22 34599999853 3344332211112222122 33433 78899983322 469999999666666652
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEE
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAF 270 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~ 270 (617)
+ .. ..+.+++...+.+.|||.
T Consensus 223 p-----~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 P-----VP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S-----SS--SEEEEEEESTTSSEEEEE
T ss_pred C-----CC--CEEEEEEECCCCCEEEEE
Confidence 1 11 344555544445566653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.67 Score=45.89 Aligned_cols=174 Identities=17% Similarity=0.278 Sum_probs=100.7
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEE-e
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSV-V 88 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~-~ 88 (617)
..+++||+.+++ |..-... +. ....+..++.||+..+. ..++.+|..+.. |+. .
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~~------------~~--~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLPG------------PI--SGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp SEEEEEETTTSEEEEEEECSS------------CG--GSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE
T ss_pred CEEEEEECCCCCEEEEeeccc------------cc--cceeeecccccccccce-------eeeEecccCCcceeeeecc
Confidence 579999987665 7554321 11 12246778999888632 279999988775 984 4
Q ss_pred eccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCc-------ccEEEEECC
Q 007111 89 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRS-------NHVAALYDD 159 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~-------~h~a~~~~~ 159 (617)
... +....+........++.+|+... ...++.+|+.+.+ |+.-- ..|..-. ..+..++.+
T Consensus 105 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 105 TSS-PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp -SS-CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEEEECCT
T ss_pred ccc-cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccceEEEC
Confidence 321 11112344455555777777643 3568999999876 87642 2222111 112233333
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc-
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 236 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~- 236 (617)
..+|+..+... +..+|..++. |+.. .. . ........++.+|+.. .. ..++.+|+.+.+
T Consensus 174 ~~v~~~~~~g~------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~-~~-----~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 174 GRVYVSSGDGR------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS-SD-----GRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEECCTSS------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-TT-----TEEEEEETTTTEE
T ss_pred CEEEEEcCCCe------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-CC-----CEEEEEECCCCCE
Confidence 34888766542 6677999987 7433 22 1 1111344477888876 32 469999999874
Q ss_pred -EE
Q 007111 237 -WS 238 (617)
Q Consensus 237 -W~ 238 (617)
|+
T Consensus 235 ~W~ 237 (238)
T PF13360_consen 235 VWQ 237 (238)
T ss_dssp EEE
T ss_pred EeE
Confidence 64
|
... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.17 Score=52.66 Aligned_cols=112 Identities=22% Similarity=0.294 Sum_probs=72.6
Q ss_pred CceEEEEEECCCCcEEEeeccCCCCCCcce--eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC--CCC
Q 007111 71 DRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTG 145 (617)
Q Consensus 71 ~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~--~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~ 145 (617)
....+..||+.+.+|..+.. - -.+ .++... ++++|+.|-.+.++.....+-.||..+.+|+.+... ..+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~i 87 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSI 87 (281)
T ss_pred CCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccC
Confidence 46789999999999988863 1 222 233333 678888887665553467799999999999988531 235
Q ss_pred CCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 146 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 146 P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
|.+....+....+...+++.|....+ ..-+..|| ..+|..+..
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANG--STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCC--CceEEEEc--CCceEeccc
Confidence 55543222222344457887776322 23466775 778998866
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.43 E-value=1.5 Score=47.15 Aligned_cols=173 Identities=16% Similarity=0.187 Sum_probs=93.4
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|+.+++ |...... + ...+.+..++.+|+..+. ..++.+|+.+.+ |+...
T Consensus 115 g~l~ald~~tG~~~W~~~~~~------------~--~~~~p~v~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSS------------E--VLSPPLVANGLVVVRTND-------GRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEECCCCcEeeeeccCc------------e--eecCCEEECCEEEEECCC-------CeEEEEEcCCCceeeEEcc
Confidence 368999986554 8654321 0 112233457787775432 359999998764 87543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCC--------cccEEEEECC
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPR--------SNHVAALYDD 159 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R--------~~h~a~~~~~ 159 (617)
.. +....+...+.+..++.+| +|.. ...++.+|+.+.+ |+.-. ..|... ...+.++.++
T Consensus 174 ~~-~~~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 174 VT-PALTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRV---ALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred CC-CceeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeecc---ccCCCCCchhhhhccCCccEEECC
Confidence 11 1011122233445566554 4332 2358999998764 86431 111111 1122233444
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC--
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-- 235 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~-- 235 (617)
. +|+.+. + ..++.||+.+++ |..-. + . ..+.+..++++|+.... ..++.+|..+.
T Consensus 243 ~-vy~~~~-~-----g~l~a~d~~tG~~~W~~~~-----~-~--~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~ 301 (377)
T TIGR03300 243 Q-VYAVSY-Q-----GRVAALDLRSGRVLWKRDA-----S-S--YQGPAVDDNRLYVTDAD------GVVVALDRRSGSE 301 (377)
T ss_pred E-EEEEEc-C-----CEEEEEECCCCcEEEeecc-----C-C--ccCceEeCCEEEEECCC------CeEEEEECCCCcE
Confidence 4 776543 2 259999997754 65431 1 1 12334568899987521 35889998765
Q ss_pred cEEE
Q 007111 236 EWSV 239 (617)
Q Consensus 236 ~W~~ 239 (617)
.|..
T Consensus 302 ~W~~ 305 (377)
T TIGR03300 302 LWKN 305 (377)
T ss_pred EEcc
Confidence 4765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=2.1 Score=47.57 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=83.1
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.+.+-..+. ..+..-...+....+..|++....++ ..++|.+|+.+.+.+++... . .....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~-~~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---R-AIDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---C-CCccc
Confidence 47999999988776664 22221112222223446666544333 25799999999998877421 1 11111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
....-+++.|++.....+ ...+|.+|+.++.+..+...+.. . ...+....++.||+.+... ....++.+|+
T Consensus 311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~--~-~~~~~SpDG~~l~~~~~~~---g~~~I~~~dl 381 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ--N-LGGSITPDGRSMIMVNRTN---GKFNIARQDL 381 (448)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC--C-cCeeECCCCCEEEEEEecC---CceEEEEEEC
Confidence 222335554555433322 25799999999999887532111 1 1112222244555554322 1246899999
Q ss_pred CCCcEEEee
Q 007111 233 LKGEWSVAI 241 (617)
Q Consensus 233 ~~~~W~~l~ 241 (617)
.+..+..+.
T Consensus 382 ~~g~~~~lt 390 (448)
T PRK04792 382 ETGAMQVLT 390 (448)
T ss_pred CCCCeEEcc
Confidence 998877764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.2 Score=44.16 Aligned_cols=213 Identities=19% Similarity=0.254 Sum_probs=117.1
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceE-EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEe
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHS-LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVV 88 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs-~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 88 (617)
..+.++|+.+++ |..--. .+.....+ .+..++++|+..+. ..++.||..+.+ |+.-
T Consensus 3 g~l~~~d~~tG~~~W~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG------------PGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS------------SSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECC------------CCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEee
Confidence 357899987665 876321 01111121 34478899988432 379999998876 7655
Q ss_pred eccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEE-eecCCCCCC-CCcccEEEEECCcEEEE
Q 007111 89 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP-LHCTGTGPS-PRSNHVAALYDDKNLLI 164 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~-l~~~g~~P~-~R~~h~a~~~~~~~LyV 164 (617)
. +.. ........++.+|+..+ .+.++.||..+.+ |+. ... ..+. .+......+.++. +|+
T Consensus 64 ~-----~~~-~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 127 (238)
T PF13360_consen 64 L-----PGP-ISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGDR-LYV 127 (238)
T ss_dssp C-----SSC-GGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETTE-EEE
T ss_pred c-----ccc-ccceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecCE-EEE
Confidence 3 111 11114677889988761 2379999988775 984 421 1112 2233334444444 555
Q ss_pred EccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCC-----CCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc-
Q 007111 165 FGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPS-----PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 236 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~-----~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~- 236 (617)
... + ..++.+|+.+++ |......+.... .......+..++.+|+..+... +..+|..+..
T Consensus 128 ~~~-~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~ 195 (238)
T PF13360_consen 128 GTS-S-----GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEK 195 (238)
T ss_dssp EET-C-----SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEE
T ss_pred Eec-c-----CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCE
Confidence 443 2 459999998765 665443211000 0111233334678888876432 5666999886
Q ss_pred -EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 237 -WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 237 -W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
|+.. ... ..+.... ..+.||+.. . ...++++|+.+.+
T Consensus 196 ~w~~~--~~~-------~~~~~~~---~~~~l~~~~-~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 196 LWSKP--ISG-------IYSLPSV---DGGTLYVTS-S----DGRLYALDLKTGK 233 (238)
T ss_dssp EEEEC--SS--------ECECEEC---CCTEEEEEE-T----TTEEEEEETTTTE
T ss_pred EEEec--CCC-------ccCCcee---eCCEEEEEe-C----CCEEEEEECCCCC
Confidence 8442 111 1111121 246666655 3 2479999998876
|
... |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.14 Score=55.04 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=76.8
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCcc----CeEEEE-
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKL----NDLHMF- 129 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~----~~v~~y- 129 (617)
.+++|+..++. ..+.+||+.+..-...| .++.+...-.++.+++.||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48899988654 23899999999888776 4555555557777899999998764432110 144555
Q ss_pred -EC--------CCCcEEEeecCCCCCCCCcc-------cEEEEECCcEEEE-EccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 130 -DL--------KSLTWLPLHCTGTGPSPRSN-------HVAALYDDKNLLI-FGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 130 -D~--------~t~~W~~l~~~g~~P~~R~~-------h~a~~~~~~~LyV-~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
++ ....|..++ +.|..+.. .+-+++++..|+| .-|.. ...|.||+.+.+|+.+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 31 223578774 33433332 2334446666877 44432 238999999999999854
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.4 Score=44.58 Aligned_cols=186 Identities=13% Similarity=0.080 Sum_probs=87.9
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
+|+.++.+ ..+.+||+.+++-...-. .....+ +.+....+..+|+.++. ...++.||+
T Consensus 3 ~~~s~~~d-----~~v~~~d~~t~~~~~~~~----------~~~~~~-~l~~~~dg~~l~~~~~~------~~~v~~~d~ 60 (300)
T TIGR03866 3 AYVSNEKD-----NTISVIDTATLEVTRTFP----------VGQRPR-GITLSKDGKLLYVCASD------SDTIQVIDL 60 (300)
T ss_pred EEEEecCC-----CEEEEEECCCCceEEEEE----------CCCCCC-ceEECCCCCEEEEEECC------CCeEEEEEC
Confidence 35556543 379999998776433221 001111 11111123457777653 236889999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY- 157 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~- 157 (617)
.+.+....-. ..+.. ..++.. ++.+|+.++. ...+.+||+.+..-... ++.....+.++..
T Consensus 61 ~~~~~~~~~~--~~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~-----~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 61 ATGEVIGTLP--SGPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAE-----IPVGVEPEGMAVSP 124 (300)
T ss_pred CCCcEEEecc--CCCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeE-----eeCCCCcceEEECC
Confidence 8876543211 11111 122222 3456665432 23589999987642211 1111111233433
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
++. +++++..+. +.++.||..+..-......+. .++ +.....++..+++++... ..+..||+.+.+.
T Consensus 125 dg~-~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~--~~~--~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 125 DGK-IVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ--RPR--FAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred CCC-EEEEEecCC----CeEEEEeCCCCeEEEEEEcCC--Ccc--EEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 455 555554432 246678887665433222111 111 222222455444444322 3588899887643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.13 Score=55.57 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=84.6
Q ss_pred CCE-EEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcc-eeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS-GHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~-lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~-~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+|. .++++|.. .-+|.||+.+.+..++.....++..-. .+.+. .++.++++-|..+. ++++...|
T Consensus 268 ~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~------I~lLhakT 334 (514)
T KOG2055|consen 268 NGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGH------IHLLHAKT 334 (514)
T ss_pred CCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEcccCce------EEeehhhh
Confidence 444 77787762 359999999999988875433442211 22222 34456666665443 77777788
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKW 212 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~-~~~~I 212 (617)
+.|..- -.++. +..-.+...+++.||+.||++ .||+||+.++........ ....++-+.|. .++.+
T Consensus 335 ~eli~s---~KieG-~v~~~~fsSdsk~l~~~~~~G------eV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 335 KELITS---FKIEG-VVSDFTFSSDSKELLASGGTG------EVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSY 401 (514)
T ss_pred hhhhhe---eeecc-EEeeEEEecCCcEEEEEcCCc------eEEEEecCCcceEEEEee---cCccceeeeeecCCCce
Confidence 888632 12222 222222234566799999975 599999998866554332 22334444443 36665
Q ss_pred EEEecCCCCCccceEEEEECC
Q 007111 213 YIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~ 233 (617)
+.+|-.++ -+-+||..
T Consensus 402 lA~GS~~G-----iVNIYd~~ 417 (514)
T KOG2055|consen 402 LATGSDSG-----IVNIYDGN 417 (514)
T ss_pred EEeccCcc-----eEEEeccc
Confidence 55554332 25577643
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.09 Score=56.85 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=90.0
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
-.+.+.+|.+.. -.+|..|-.+|. .+. ++-..++-- +++.. ++...++++|+.. -+|.||+.+.
T Consensus 225 ~plllvaG~d~~----lrifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ysyDle~a 290 (514)
T KOG2055|consen 225 APLLLVAGLDGT----LRIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGRRK-----YLYSYDLETA 290 (514)
T ss_pred CceEEEecCCCc----EEEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEecccce-----EEEEeecccc
Confidence 478888888765 224444444443 332 221111111 23333 3333677777753 3899999999
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCc
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 265 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~ 265 (617)
+.+++..+.-.+.+-...--+..++.++++-|..+ .++.+...++.|-.--..+ + ..+...+. ++..
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~Kie-----G--~v~~~~fs-Sdsk 357 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIE-----G--VVSDFTFS-SDSK 357 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeec-----c--EEeeEEEe-cCCc
Confidence 99988775444422211122333555666666553 4778888888886633211 1 13333343 3457
Q ss_pred EEEEEcCCCCCCCCeEEEEECCCCcccccc
Q 007111 266 FLVAFGGIKKEPSNQVEVLSIEKNESSMGR 295 (617)
Q Consensus 266 ~L~I~GG~~~~~~~dV~vyd~~~~~W~~~w 295 (617)
.|++.||++ .||++|+..+....+|
T Consensus 358 ~l~~~~~~G-----eV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 358 ELLASGGTG-----EVYVWNLRQNSCLHRF 382 (514)
T ss_pred EEEEEcCCc-----eEEEEecCCcceEEEE
Confidence 889999875 8999999998754444
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.022 Score=72.06 Aligned_cols=135 Identities=31% Similarity=0.376 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH-----------
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ----------- 538 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q----------- 538 (617)
.-.+...++.+....+..|+-+.....+.+-....-++.-.-.+++|++....|+|.|+++++.+++|.
T Consensus 1622 ~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~ 1701 (1930)
T KOG0161|consen 1622 HANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELA 1701 (1930)
T ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455556666666666666666666666666666666666778999999999999999999998876
Q ss_pred Hhhhccc---ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhcccccc--------------------------
Q 007111 539 EEANSLS---NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQ-------------------------- 589 (617)
Q Consensus 539 e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 589 (617)
|..|.+. +.--+++.+||.||+-|.+-|+++++|++. |.||+|--|
T Consensus 1702 e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~-----~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~ 1776 (1930)
T KOG0161|consen 1702 ERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRA-----AEERAKKAQADAAKLAEELRKEQETSQKLERLKKS 1776 (1930)
T ss_pred HHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 445678899999999999999999999874 444444333
Q ss_pred chhhHHHHHHHHhhhhccCC
Q 007111 590 LQVEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~ 609 (617)
|+.+|-.|+.||+-+|+.+-
T Consensus 1777 LE~~~kdLq~rL~e~E~~a~ 1796 (1930)
T KOG0161|consen 1777 LERQVKDLQLRLDEAEQAAL 1796 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34578889999999998764
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.15 Score=53.10 Aligned_cols=124 Identities=16% Similarity=0.255 Sum_probs=74.1
Q ss_pred EEEeecCCCCC-ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC-CCCeEEEEECCCCcEE
Q 007111 111 ILFGGEDGKRR-KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWT 188 (617)
Q Consensus 111 Yv~GG~~~~~~-~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~-~~n~v~~yD~~t~~W~ 188 (617)
||-|-++..+. .+..+..||+.+.+|..+. .--.+ .-..+...++..+|+.|-..... ....+..||..+.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g---~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPG---NGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCC---CCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 44444444442 4788999999999999873 22111 12233344555577777654333 4567999999999999
Q ss_pred EeecC--CCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 189 RIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 189 ~~~~~--g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
.+... ...|.|......... .+.+++.|..... ..-+..| +..+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG--STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecCC--CceEEEE--cCCceEeccc
Confidence 88772 234444322222222 3467777765221 2334455 5778999864
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.75 E-value=4.1 Score=46.40 Aligned_cols=217 Identities=15% Similarity=0.123 Sum_probs=110.6
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccC-CCCC----CcceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKG-DIPV----ARSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g-~~P~----~R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.... ..++.+|..+.+ |+.-.... .... .......++.+++||+.. ...
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDA 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCC
Confidence 34568999986542 258999988764 87654210 0100 011223456677887632 124
Q ss_pred eEEEEECCCCc--EEEeecCCCCCCC-CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCC---
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFH--- 196 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~~-R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~--- 196 (617)
.++.+|..+.+ |+.-. ...... ....+-+++++. +|+-...........++.||.++++ |+.....+..
T Consensus 131 ~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred EEEEEECCCCCEEeeccc--ccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 68999998876 87532 111111 111233445665 5553221112234568999998764 7644331110
Q ss_pred ----------C---------CCC----cceEEEEE--CCEEEEEecC----CC------CCccceEEEEECCCCc--EEE
Q 007111 197 ----------P---------SPR----AGCCGVLC--GTKWYIAGGG----SR------KKRHAETLIFDILKGE--WSV 239 (617)
Q Consensus 197 ----------P---------~~R----~~ha~v~~--~~~IyI~GG~----s~------~~~~~~v~~yDl~~~~--W~~ 239 (617)
| -.+ ....+++. .+.||+--|. .. +...+.+..+|+++.+ |..
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 001 11122332 3567765443 11 2345789999999864 876
Q ss_pred eecCCCCCCCCCcceEEEEEee--cCC-cEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 240 AITSPSSSVTSNKGFTLVLVQH--KEK-DFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 240 l~~~~~~~p~~r~~~s~v~v~~--~~~-~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
... +...-..-.....+++.. +++ ..+++.+..+| .+|++|..+.+
T Consensus 288 Q~~-~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~ 336 (527)
T TIGR03075 288 QTT-PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG----FFYVLDRTNGK 336 (527)
T ss_pred eCC-CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc----eEEEEECCCCc
Confidence 542 211111111122333432 221 24777777654 68999988765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=6 Score=44.69 Aligned_cols=45 Identities=24% Similarity=0.182 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQE 512 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 512 (617)
+-|......++++|.. .|..|-++..+.+|+.+|+-+.+++..++
T Consensus 445 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (493)
T PTZ00421 445 EGILDERLGRLQALSE---KLRTQHEEIKRCREALQKKESIVMETLEK 489 (493)
T ss_pred hhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666554 45566667777778887777777655443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=5.7 Score=43.60 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=80.6
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.++.-+.+.. .+..-........+.+|++....++ ..++|++|+.+..++.+.. .+ .....
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~~~ 291 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN---HP-AIDTE 291 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc---CC-CCcCC
Confidence 479999999988777652 2211111111112345554432222 2579999999999887731 11 11111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
....-+++.|++.....+ ...+|.+|+.++.+..+...+ .... .+....++.|++.....+ ...++++|
T Consensus 292 ~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~d 361 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG---NFHVAAQD 361 (430)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC---ceEEEEEE
Confidence 222235554555432222 247999999999888775421 1111 111222455655543222 23699999
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+..++.+.
T Consensus 362 l~tg~~~~lt 371 (430)
T PRK00178 362 LQRGSVRILT 371 (430)
T ss_pred CCCCCEEEcc
Confidence 9998887765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=7.2 Score=43.06 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=95.4
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.+.....+. ..+..-........+.+|++....++ ..++|.+|..+....++.. .+. ....
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~---~~~-~~~~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD---SPA-IDTS 294 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---CCC-ccCc
Confidence 47999999998887775 22322222222222345655543333 3579999999988877631 111 1112
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
....-+++.|++.....+ ...+|++|..++..+.+... ..... ......++.|++.....+ ...++++|
T Consensus 295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~~i~~~d 364 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QFSIGVMK 364 (435)
T ss_pred eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ceEEEEEE
Confidence 222335554543322222 25799999988877776532 11111 111222445555432211 24689999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCc
Q 007111 232 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 290 (617)
Q Consensus 232 l~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~ 290 (617)
+....+..+... . ......+..+ ...|+......+.. ...++++|+....
T Consensus 365 ~~~~~~~~lt~~--~------~~~~p~~spD-G~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 365 PDGSGERILTSG--F------LVEGPTWAPN-GRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCCceEeccCC--C------CCCCCeECCC-CCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 877666554321 0 1112223322 23444333322221 2478888886654
|
|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.15 Score=57.23 Aligned_cols=38 Identities=34% Similarity=0.311 Sum_probs=27.3
Q ss_pred HhhhhhccchhhhccccccchhhHHHHHHHHhhhhccC
Q 007111 571 KELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
++|..+---+.-+..+++++|+|+..||..|+.++.+.
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~l 299 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQL 299 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33443333334456678999999999999999998764
|
This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region []. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.80 E-value=8.9 Score=43.16 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=104.5
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCC-CC-cceeEEEEEC-CEEEEEeecCCCCCccCeE
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIP-VA-RSGHTVVRAS-SVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P-~~-R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v 126 (617)
-++.+++||+.... ..++.+|..+.+ |+.-......+ .+ -.....+..+ +.||+.. ....+
T Consensus 57 Pvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-------~~g~v 122 (488)
T cd00216 57 PLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-------FDGRL 122 (488)
T ss_pred CEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-------CCCeE
Confidence 35668999987542 358999988765 87643211000 00 0111233445 7777642 12468
Q ss_pred EEEECCCCc--EEEeecCCCC-CCCCcccEEEEECCcEEEEEccCCCC----CCCCeEEEEECCCC--cEEEeecCCCC-
Q 007111 127 HMFDLKSLT--WLPLHCTGTG-PSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETM--IWTRIKIRGFH- 196 (617)
Q Consensus 127 ~~yD~~t~~--W~~l~~~g~~-P~~R~~h~a~~~~~~~LyV~GG~~~~----~~~n~v~~yD~~t~--~W~~~~~~g~~- 196 (617)
+.+|..+.+ |+.-. .+.. +......+.++.+ . ++++|..+.. .....++.||..|+ .|..-...+.+
T Consensus 123 ~AlD~~TG~~~W~~~~-~~~~~~~~~i~ssP~v~~-~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~ 199 (488)
T cd00216 123 VALDAETGKQVWKFGN-NDQVPPGYTMTGAPTIVK-K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN 199 (488)
T ss_pred EEEECCCCCEeeeecC-CCCcCcceEecCCCEEEC-C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence 999998765 88542 1110 0000122334444 4 3445533221 22457999999765 48754321111
Q ss_pred --CC------------CCcceEEEEE--CCEEEEEecCC------------CCCccceEEEEECCCC--cEEEeecCCCC
Q 007111 197 --PS------------PRAGCCGVLC--GTKWYIAGGGS------------RKKRHAETLIFDILKG--EWSVAITSPSS 246 (617)
Q Consensus 197 --P~------------~R~~ha~v~~--~~~IyI~GG~s------------~~~~~~~v~~yDl~~~--~W~~l~~~~~~ 246 (617)
|. +....+.++. ++.+|+-.|.. .+...+.++.+|+.+. .|+.-...+ .
T Consensus 200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~-~ 278 (488)
T cd00216 200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH-D 278 (488)
T ss_pred CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC-C
Confidence 10 0011122222 46666654321 1123357999999876 488642111 0
Q ss_pred CCCCCcceEE-EEEe---ecCC-cEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTL-VLVQ---HKEK-DFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~-v~v~---~~~~-~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.. ....++. ++.. ..+. ..++++|..++ .++.+|+.+.+
T Consensus 279 ~~-~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G----~l~ald~~tG~ 322 (488)
T cd00216 279 LW-DYDGPNQPSLADIKPKDGKPVPAIVHAPKNG----FFYVLDRTTGK 322 (488)
T ss_pred Cc-ccccCCCCeEEeccccCCCeeEEEEEECCCc----eEEEEECCCCc
Confidence 00 0011111 1111 1111 12455665543 58999998876
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=8 Score=42.69 Aligned_cols=194 Identities=7% Similarity=-0.038 Sum_probs=95.7
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
..++++|+.+.....+... +. .....+....|.+|++.....+ ..++|.+|+.+.....+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~----------~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~--- 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF----------PG-MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD--- 287 (435)
T ss_pred CEEEEEECCCCcEEEeecC----------CC-cccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---
Confidence 4688999988877766541 11 0111111122345544433211 2479999999888776652
Q ss_pred CCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 007111 94 IPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~ 172 (617)
.+..-.. ....-++ .|++.....+ ...+|++|..+...+.+.. ....+......-+++.|++... ...
T Consensus 288 ~~~~~~~-~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~----~~~~~~~~~~SpdG~~ia~~~~-~~~- 356 (435)
T PRK05137 288 SPAIDTS-PSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISF----GGGRYSTPVWSPRGDLIAFTKQ-GGG- 356 (435)
T ss_pred CCCccCc-eeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeec----CCCcccCeEECCCCCEEEEEEc-CCC-
Confidence 1211111 1112234 4544332222 2579999998888877741 1122222233335664544432 211
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 173 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
...++.+|+.++....+... . .-...+....+..|++.....+......+|.+|+....-..+.
T Consensus 357 -~~~i~~~d~~~~~~~~lt~~---~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 357 -QFSIGVMKPDGSGERILTSG---F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred -ceEEEEEECCCCceEeccCC---C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 24689999877665544321 1 1111122222334444432221111246899998776655543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.66 E-value=8 Score=41.95 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=80.5
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..++++|+.++....+. ..+......+....+..|++....++ ..++|.+|+.+.....+... +.. ...
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~---~~~-~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNG---PGI-DTE 282 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCC---CCC-CCC
Confidence 57999999988766654 22222222121112345665543322 25799999998888777421 111 111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
....-+++.|++.....+ ...+|.+|..++.+..+...+ ......+.. +++.+++..... ....++.+|
T Consensus 283 ~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d 352 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVMD 352 (417)
T ss_pred EEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEEe
Confidence 122235554554433322 247999999988887765431 111222222 455555544322 234689999
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+..+..+.
T Consensus 353 ~~~~~~~~l~ 362 (417)
T TIGR02800 353 LDGGGERVLT 362 (417)
T ss_pred CCCCCeEEcc
Confidence 9887776654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=8.9 Score=42.32 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=80.7
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|++|+.++....+. ..+..-........+.+|++....+++ .++|++|+.+....++... + .....
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~----~~Iy~~d~~~g~~~~lt~~---~-~~~~~ 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGN----PEIYVMDLGSRQLTRLTNH---F-GIDTE 296 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCC----ceEEEEECCCCCeEECccC---C-CCccc
Confidence 47999999988877665 222211111111223456554433332 5799999999887766311 1 11111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
....-+++.|++.....+ ...+|.+|..++.+..+...+. .....+....++.|++..+..+ ...++++|+
T Consensus 297 ~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g~---~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~ 367 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQGN---YNARASVSPDGKKIAMVHGSGG---QYRIAVMDL 367 (433)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCCC---CccCEEECCCCCEEEEEECCCC---ceeEEEEEC
Confidence 222224554444433322 2479999998888887754311 1111122223556666544221 136899999
Q ss_pred CCCcEEEee
Q 007111 233 LKGEWSVAI 241 (617)
Q Consensus 233 ~~~~W~~l~ 241 (617)
.+..+..+.
T Consensus 368 ~~g~~~~Lt 376 (433)
T PRK04922 368 STGSVRTLT 376 (433)
T ss_pred CCCCeEECC
Confidence 888887664
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=94.56 E-value=4.9 Score=39.05 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=85.5
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++..+++|+.+ ..+.+||..+......- .... ..-.++.... +.+++.|+.+ ..+.+||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~---~~~~-~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTL---TGHT-SYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEE---eccC-CcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 34466666642 35888888775322211 0011 1112222222 3566665522 35889998865
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
.-...- . .....-.++....+..+++.|+.++ .+..||+.+..-...... ....-.++... ++..+
T Consensus 126 ~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 126 KCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTGKCVATLTG----HTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCCC-----cEEEEEccccccceeEec----CccccceEEECCCcCEE
Confidence 433221 1 1111112333333342444444243 488999875432222111 11112233333 34355
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++++.. ..+.+||+........- . . .......+.+.. .+.+++.|+.+ ..+.+||+.+..
T Consensus 193 ~~~~~~-----~~i~i~d~~~~~~~~~~--~---~-~~~~i~~~~~~~--~~~~~~~~~~~----~~i~i~~~~~~~ 252 (289)
T cd00200 193 LSSSSD-----GTIKLWDLSTGKCLGTL--R---G-HENGVNSVAFSP--DGYLLASGSED----GTIRVWDLRTGE 252 (289)
T ss_pred EEecCC-----CcEEEEECCCCceecch--h---h-cCCceEEEEEcC--CCcEEEEEcCC----CcEEEEEcCCce
Confidence 555543 35889998764433221 0 0 111222233322 25566666533 257888876543
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.2 Score=47.95 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCC-------CCeEE
Q 007111 106 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT-------LNDLY 178 (617)
Q Consensus 106 ~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~-------~n~v~ 178 (617)
.+++|+..++. ....+||..+..-...+ .++.+.....++.++++ ||++........ .-++.
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 47888888654 23789999998877553 46666666677788999 999987743211 22334
Q ss_pred EEE--------CCCCcEEEeecCCCCCCCCc-------ceEEEEE-CCEEEE-EecCCCCCccceEEEEECCCCcEEEee
Q 007111 179 SLD--------FETMIWTRIKIRGFHPSPRA-------GCCGVLC-GTKWYI-AGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 179 ~yD--------~~t~~W~~~~~~g~~P~~R~-------~ha~v~~-~~~IyI-~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
.|+ .....|..+++ +|..+. -.+.+++ +.+||| +-|.. .-+|.||..+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 444 23446776644 233222 2334445 778888 44432 23899999999999986
Q ss_pred c
Q 007111 242 T 242 (617)
Q Consensus 242 ~ 242 (617)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 4
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=9.1 Score=42.01 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=76.5
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 124 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 124 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
..+|++|+.+..-..+. ..+. ........-+++.|++....++ ..++|+||+.++.+..+... +..-...
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g-~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~~~~~~~ 292 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEG-LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNH---PAIDTEP 292 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCC-CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccC---CCCcCCe
Confidence 57999999998887763 1111 1111222224554544322222 15799999999988876542 1111111
Q ss_pred EEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 204 CGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 204 a~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
.....+..||+.....+ ...+|.+|+.+..+..+.... . ......+..+ ...|+.....++ ...+++
T Consensus 293 ~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~------~-~~~~~~~Spd-g~~i~~~~~~~~--~~~l~~ 359 (430)
T PRK00178 293 FWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG------N-YNARPRLSAD-GKTLVMVHRQDG--NFHVAA 359 (430)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC------C-CccceEECCC-CCEEEEEEccCC--ceEEEE
Confidence 11112445665543222 246999999888887764211 1 1122233322 345554443322 336899
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
+|+.+.++
T Consensus 360 ~dl~tg~~ 367 (430)
T PRK00178 360 QDLQRGSV 367 (430)
T ss_pred EECCCCCE
Confidence 99887654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=10 Score=42.17 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=78.7
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCccc-ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~-~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..++++|+.+.+-..+... +... ..+....+..|++....++ ...+|.+|+.++..+.+...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~- 304 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH- 304 (448)
T ss_pred cEEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC-
Confidence 3577778777665555431 1111 1112122445655533211 25799999999988777531
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~ 172 (617)
...-...+....+..|++.....+ ...+|.+|+.+.+++.+...+. ........-+++.|++.+.. ..
T Consensus 305 --~~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~~-~g- 372 (448)
T PRK04792 305 --RAIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE----QNLGGSITPDGRSMIMVNRT-NG- 372 (448)
T ss_pred --CCCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC----CCcCeeECCCCCEEEEEEec-CC-
Confidence 111111111112335555443322 2579999999999988742211 11112233356645554332 22
Q ss_pred CCCeEEEEECCCCcEEEeec
Q 007111 173 TLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~~ 192 (617)
...++.+|+.++....+..
T Consensus 373 -~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -ceEEEEEECCCCCeEEccC
Confidence 2469999999988876643
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.21 E-value=12 Score=42.14 Aligned_cols=204 Identities=14% Similarity=0.091 Sum_probs=95.4
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCC---CCceEEEEEECCCCc--EE
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG---SDRVSVWTFDTETEC--WS 86 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~---~~~~~v~~yd~~t~~--W~ 86 (617)
..++++|..+.+ |..-.... .........+.+..++.+|+ |...... .....++.||..+.+ |+
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~--------~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQ--------VPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCC--------cCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeE
Confidence 468999987654 87654310 00000011233445666664 4221111 123479999998775 86
Q ss_pred EeeccCCCCCCc---------------ceeEEEE--ECCEEEEEeecCC-----------CCCccCeEEEEECCCCc--E
Q 007111 87 VVEAKGDIPVAR---------------SGHTVVR--ASSVLILFGGEDG-----------KRRKLNDLHMFDLKSLT--W 136 (617)
Q Consensus 87 ~~~~~g~~P~~R---------------~~~s~~~--~~~~IYv~GG~~~-----------~~~~~~~v~~yD~~t~~--W 136 (617)
.-.........+ ...+.+. .++.+|+-.|-.. .....+.++.+|..+.+ |
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 543211110001 0011222 2456666544221 11235689999999875 9
Q ss_pred EEeecCCCCCCCCccc--EEEE---ECCc--EEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEE
Q 007111 137 LPLHCTGTGPSPRSNH--VAAL---YDDK--NLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 137 ~~l~~~g~~P~~R~~h--~a~~---~~~~--~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~ 207 (617)
+.-....+...-+... ...- +++. .++++|..++ .++.+|..+++ |+.-... ..++.
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~~~~~---------~~~~~ 336 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISARPEVE---------QPMAY 336 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEeEeec---------ccccc
Confidence 8532111110001111 1111 2222 2445555443 39999998775 7643221 00111
Q ss_pred ECCEEEEEecCC------------CCCccceEEEEECCCC--cEEEe
Q 007111 208 CGTKWYIAGGGS------------RKKRHAETLIFDILKG--EWSVA 240 (617)
Q Consensus 208 ~~~~IyI~GG~s------------~~~~~~~v~~yDl~~~--~W~~l 240 (617)
..+.+|+-.... .......++.+|..+. .|+.-
T Consensus 337 ~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 337 DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 125666643211 0112356889998865 48774
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=4.4 Score=44.49 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=94.1
Q ss_pred EEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 53 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 53 v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
...++.++++|+-+. .+-.+|..+..- .....+..-.-|++ ++...+++|++-||+++. +-.||..
T Consensus 119 ~~~d~t~l~s~sDd~------v~k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR 184 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDK------VVKYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTR 184 (487)
T ss_pred cccCCeEEEecCCCc------eEEEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEec
Confidence 346889999987531 233345444442 43333333344444 344557899999999875 6788888
Q ss_pred CC-cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C
Q 007111 133 SL-TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G 209 (617)
Q Consensus 133 t~-~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~ 209 (617)
+. .|.. +.....|.. .++.+ .+..|...|| |.+-+||+.++.=. +..+.. .-..--++... +
T Consensus 185 ~~~~~v~-elnhg~pVe----~vl~lpsgs~iasAgG-------n~vkVWDl~~G~ql-l~~~~~--H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 185 SLTSRVV-ELNHGCPVE----SVLALPSGSLIASAGG-------NSVKVWDLTTGGQL-LTSMFN--HNKTVTCLRLASD 249 (487)
T ss_pred cCCceeE-EecCCCcee----eEEEcCCCCEEEEcCC-------CeEEEEEecCCcee-hhhhhc--ccceEEEEEeecC
Confidence 77 4442 222222322 23333 3354666677 45788888655321 111110 00111122222 4
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 276 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~ 276 (617)
+.-.+-||..+ .+-+||. ..|..+..... |.+ -.++.+.. ++.-+++|+.+|-
T Consensus 250 ~~rLlS~sLD~-----~VKVfd~--t~~Kvv~s~~~--~~p--vLsiavs~---dd~t~viGmsnGl 302 (487)
T KOG0310|consen 250 STRLLSGSLDR-----HVKVFDT--TNYKVVHSWKY--PGP--VLSIAVSP---DDQTVVIGMSNGL 302 (487)
T ss_pred CceEeeccccc-----ceEEEEc--cceEEEEeeec--ccc--eeeEEecC---CCceEEEecccce
Confidence 56777777664 3778884 44555542211 111 12333332 4567788887754
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=11 Score=41.51 Aligned_cols=186 Identities=8% Similarity=0.059 Sum_probs=101.1
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
.+|++|+.++.=+.+.. .+. ........-+ .+|++.-..++ ..++|.+|..+..++++. ..+. ....
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT---~~~~-~d~~ 281 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQIT---NYPG-IDVN 281 (419)
T ss_pred EEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcc---cCCC-ccCc
Confidence 79999998887666652 111 1111112223 46665544332 368999999999999884 1121 1111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---ccceEEE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLI 229 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~---~~~~v~~ 229 (617)
....-+++.||+.-...+ ..+||++|+.++..+++...+. ........++.|.......... ...++++
T Consensus 282 p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred cEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 222235555666544332 2579999999999877754321 2222222345555544322211 2357999
Q ss_pred EECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 230 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 230 yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+|+.+..+..+.... . .. ...+..++ ..|+...... ....++.+++..+.
T Consensus 354 ~d~~~g~~~~LT~~~------~-~~-~p~~SPDG-~~I~f~~~~~--~~~~L~~~~l~g~~ 403 (419)
T PRK04043 354 ISTNSDYIRRLTANG------V-NQ-FPRFSSDG-GSIMFIKYLG--NQSALGIIRLNYNK 403 (419)
T ss_pred EECCCCCeEECCCCC------C-cC-CeEECCCC-CEEEEEEccC--CcEEEEEEecCCCe
Confidence 999999998876321 1 11 12233333 3344433322 23468888887654
|
|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.22 Score=51.87 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhh-----cHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALV-----NREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
.....+++++...++.|..++++++. .+..+..-...+ -.-...++.+++...++++.+|++++.+..+-+.
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999988 433333322222 2223334444445555555555555554433322
Q ss_pred hhc-ccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHH
Q 007111 541 ANS-LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR 600 (617)
Q Consensus 541 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (617)
..+ |. .-..---.....+.-++.-+++++..|+.....++.-|.+-++.=..||-+++.
T Consensus 103 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 103 RRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceee
Confidence 221 22 000001123345666666777777777778888888888888877888888665
|
In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy |
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.23 Score=55.73 Aligned_cols=135 Identities=26% Similarity=0.235 Sum_probs=78.9
Q ss_pred CchHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc
Q 007111 464 PSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 543 (617)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~ 543 (617)
++.|--.|+.+++.+-+. |+++...+..+|.++.-+=..-.++++|+..+.++...-+||+-..+-+=-+.+.
T Consensus 83 ts~ik~~ye~El~~ar~~-------l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 83 TSGIKAKYEAELATARKL-------LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred CcchhHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 377878888887764432 3334444444444444433344444444444444444444443333222222222
Q ss_pred ccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 544 LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
--|++-.+.--+|.|++-||+=..-+..+|+..|..|.-|+..---+|-.|..|+++|.-|.
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444455667777777777777778888888888888777778888889988887664
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=13 Score=41.08 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=76.0
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 123 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 123 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
...++++|+.+.....+. ..+. ........-+++.|++....++ ..++|++|+.++....+... +..-..
T Consensus 227 ~~~l~~~dl~~g~~~~l~---~~~g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~~~~~ 296 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA---SFRG-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FGIDTE 296 (433)
T ss_pred CcEEEEEECCCCCEEEec---cCCC-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CCCccc
Confidence 357999999988877663 2221 1112222234554554432222 25799999999887665432 111111
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
.+....+..|++.....+ ...+|.+|+.+..+..+... ... .....+..+ ...|++..+.++ ...++
T Consensus 297 ~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~------g~~-~~~~~~SpD-G~~Ia~~~~~~~--~~~I~ 363 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ------GNY-NARASVSPD-GKKIAMVHGSGG--QYRIA 363 (433)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecC------CCC-ccCEEECCC-CCEEEEEECCCC--ceeEE
Confidence 111212334544433222 24699999988888776421 111 112233332 345555444322 23789
Q ss_pred EEECCCCcc
Q 007111 283 VLSIEKNES 291 (617)
Q Consensus 283 vyd~~~~~W 291 (617)
++|+.+.++
T Consensus 364 v~d~~~g~~ 372 (433)
T PRK04922 364 VMDLSTGSV 372 (433)
T ss_pred EEECCCCCe
Confidence 999877654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=11 Score=39.72 Aligned_cols=230 Identities=11% Similarity=0.095 Sum_probs=101.6
Q ss_pred ceEEEEECCC-CcEEEccccccCCCCCCCCCCCcccceEEEE--ECCEEEEEcccCCCCCCceEEEEEECC-CCcEEEee
Q 007111 14 DDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t-~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~--~g~~lyV~GG~~~~~~~~~~v~~yd~~-t~~W~~~~ 89 (617)
..+.+|++.+ .++..+... +.... .+.++. .+..+|+.+.. . ..+..|+.. +..+..+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~----------~~~~~-~~~l~~spd~~~lyv~~~~-~-----~~i~~~~~~~~g~l~~~~ 74 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVV----------DVPGQ-VQPMVISPDKRHLYVGVRP-E-----FRVLSYRIADDGALTFAA 74 (330)
T ss_pred CCEEEEEECCCCceeeeeEE----------ecCCC-CccEEECCCCCEEEEEECC-C-----CcEEEEEECCCCceEEee
Confidence 4688888853 567665541 11111 122222 24456664331 1 346556654 45676554
Q ss_pred ccCCCCCCcceeEEEE-ECC-EEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEE-CCcEEEE
Q 007111 90 AKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALY-DDKNLLI 164 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~-~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV 164 (617)
. .+.....+.++. -++ .+|+.+ .. .+.+.+||+.++. ...+. ..+....-|.+++. +++++|+
T Consensus 75 ~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 75 E---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred e---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEE
Confidence 2 222212222322 234 555543 22 3567788876432 12221 12222223454444 4555666
Q ss_pred EccCCCCCCCCeEEEEECCCC-cEEEeecC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECC--CCcEE
Q 007111 165 FGGSSKSKTLNDLYSLDFETM-IWTRIKIR-GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL--KGEWS 238 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~-g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~--~~~W~ 238 (617)
..-.+ +.|.+||+.+. ........ ...+.+..-+.++.. +..+|+.-... +.+.+|++. +.++.
T Consensus 143 ~~~~~-----~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 143 PCLKE-----DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----SSVDVWQLKDPHGEIE 212 (330)
T ss_pred eeCCC-----CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----CEEEEEEEeCCCCCEE
Confidence 54322 46999998763 22211000 000111111123333 44677764322 457777765 34544
Q ss_pred Eeec---CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 239 VAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 239 ~l~~---~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+.. .|...+.++ +.+.+.-+.+..++|+... ..+.|.+|++..
T Consensus 213 ~~~~~~~~p~~~~~~~--~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~~ 259 (330)
T PRK11028 213 CVQTLDMMPADFSDTR--WAADIHITPDGRHLYACDR----TASLISVFSVSE 259 (330)
T ss_pred EEEEEecCCCcCCCCc--cceeEEECCCCCEEEEecC----CCCeEEEEEEeC
Confidence 4322 222222233 2222222334567777532 234677777644
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=14 Score=40.61 Aligned_cols=202 Identities=15% Similarity=0.121 Sum_probs=94.4
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee-EEEE--ECCEEEEEeecCCCCCccCe
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-TVVR--ASSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~-s~~~--~~~~IYv~GG~~~~~~~~~~ 125 (617)
-++++..+.-.|++||... ..+|.+.+.++.--.+ -.+.|.. ++.. .++..++-||.++.--...-
T Consensus 84 v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v------~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNV------LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred eeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHH------HHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 3677777777788887422 2577777766643211 1111111 1111 26788888888775111111
Q ss_pred EEEEECCCCcEEEeecCCCCCCCC---cccEEEEECCcEEEEEccCCCCC----CCCeEEEEECCCCcEEEeecCCCCCC
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALYDDKNLLIFGGSSKSK----TLNDLYSLDFETMIWTRIKIRGFHPS 198 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R---~~h~a~~~~~~~LyV~GG~~~~~----~~n~v~~yD~~t~~W~~~~~~g~~P~ 198 (617)
+..++..... .|.|+ .+|+..+.+ - -+=+||....- -=+.+-+||+..+.--.-. ..
T Consensus 153 ~~lv~a~~~~---------~~~p~~~f~~HtlsITD-l-~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-----~f 216 (476)
T KOG0646|consen 153 TDLVSADNDH---------SVKPLHIFSDHTLSITD-L-QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-----TF 216 (476)
T ss_pred EeecccccCC---------CccceeeeccCcceeEE-E-EecCCCccceEEEecCCceEEEEEeccceeeEEE-----ec
Confidence 1112221111 12222 345554432 1 12234432211 1134667777666332222 23
Q ss_pred CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCC-----------------CcEEEeecCCCCCCCCCcceEEEEEe
Q 007111 199 PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-----------------GEWSVAITSPSSSVTSNKGFTLVLVQ 260 (617)
Q Consensus 199 ~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-----------------~~W~~l~~~~~~~p~~r~~~s~v~v~ 260 (617)
|+.-++++.. .++.+.+|+..+. ++..++.+ .+...+. .-..+...++-.+.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~-----I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~-----Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGK-----IFQNLLFKLSGQSAGVNQKGRHEENTQINVLV-----GHENESAITCLAIS 286 (476)
T ss_pred CCcceeEEEcccccEEEecCCcce-----EEeeehhcCCcccccccccccccccceeeeec-----cccCCcceeEEEEe
Confidence 5555566654 4556666665443 33333211 1111110 01122233333333
Q ss_pred ecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc
Q 007111 261 HKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 261 ~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~ 293 (617)
-++.+++.|+.++ .|-++|+...+.-+
T Consensus 287 --~DgtlLlSGd~dg----~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 287 --TDGTLLLSGDEDG----KVCVWDIYSKQCIR 313 (476)
T ss_pred --cCccEEEeeCCCC----CEEEEecchHHHHH
Confidence 3477899998865 57889988776533
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=11 Score=40.23 Aligned_cols=178 Identities=11% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE-EECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM-FDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~-yD~~t~ 134 (617)
++.+|+.|.. ..+++-+-.-.+|..+.. +..-.-+.+....+..|++.|..+. ++. .|....
T Consensus 142 ~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G~------i~~s~~~gg~ 204 (334)
T PRK13684 142 PGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRGN------FYSTWEPGQT 204 (334)
T ss_pred CCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCce------EEEEcCCCCC
Confidence 3456666542 246666666789998863 3333344454444444444443332 232 234446
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEE-C-CCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD-F-ETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD-~-~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
+|+.+. .+..+.-++++...+..++++|... ..++. . .-..|+.+.. +........++++.. ++.
T Consensus 205 tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~ 272 (334)
T PRK13684 205 AWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGE 272 (334)
T ss_pred eEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCC
Confidence 799874 2444444455554444488887543 23342 2 3358997643 111111222334444 667
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
+|++|... .++.-.-...+|..+.... .. +...+.++... .+..|++|...
T Consensus 273 ~~~~G~~G------~v~~S~d~G~tW~~~~~~~-~~--~~~~~~~~~~~---~~~~~~~G~~G 323 (334)
T PRK13684 273 IWAGGGNG------TLLVSKDGGKTWEKDPVGE-EV--PSNFYKIVFLD---PEKGFVLGQRG 323 (334)
T ss_pred EEEEcCCC------eEEEeCCCCCCCeECCcCC-CC--CcceEEEEEeC---CCceEEECCCc
Confidence 88887532 2333333456899975211 11 12334444443 35678888653
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.56 E-value=13 Score=40.43 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=121.4
Q ss_pred ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC-CEEEEEcccCCCC-----CCceEEEEEECCCCcE
Q 007111 12 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSG-----SDRVSVWTFDTETECW 85 (617)
Q Consensus 12 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g-~~lyV~GG~~~~~-----~~~~~v~~yd~~t~~W 85 (617)
....+.++|+.+++...-. ++...+.+++..+ ++.|++....... .....||++...+..-
T Consensus 148 e~~~l~v~Dl~tg~~l~d~-------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~ 214 (414)
T PF02897_consen 148 EWYTLRVFDLETGKFLPDG-------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS 214 (414)
T ss_dssp SEEEEEEEETTTTEEEEEE-------------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG
T ss_pred ceEEEEEEECCCCcCcCCc-------------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH
Confidence 3446788888887543221 1122222244443 3555555443321 1267899999887753
Q ss_pred E--EeeccCCCCCCcc-eeEE-EEECCEEEEEeecCCCCCccCeEEEEECCCC-----cEEEeecCCCCCCCCcccEEEE
Q 007111 86 S--VVEAKGDIPVARS-GHTV-VRASSVLILFGGEDGKRRKLNDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 86 ~--~~~~~g~~P~~R~-~~s~-~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~-----~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
. .+- ..+.... ...+ ..-+++.+++.-..... .+.+|.+|.... .|..+.. +..-..+.+..
T Consensus 215 ~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~ 285 (414)
T PF02897_consen 215 EDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDH 285 (414)
T ss_dssp G-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEE
T ss_pred hCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEc
Confidence 3 332 1222232 2222 22344433333222221 378999999875 7998842 12222223344
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCc---EEEeecCCCCCCCC-cceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPR-AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~---W~~~~~~g~~P~~R-~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
.++. +|+.... ......+..+++.... |..+-.. +... .--.+...++.+++.-=.+ ....+.+||+
T Consensus 286 ~~~~-~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~ 356 (414)
T PF02897_consen 286 HGDR-LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDL 356 (414)
T ss_dssp ETTE-EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEET
T ss_pred cCCE-EEEeeCC--CCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEEC---CccEEEEEEC
Confidence 4666 7777552 3344678999997665 7754332 2222 2334455688888774322 2357899999
Q ss_pred C-CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 233 L-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 233 ~-~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
. ...-..++. | .....+.+.....++...|.+.|.. ....++.||+.+++.
T Consensus 357 ~~~~~~~~~~~-----p-~~g~v~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 357 DDGKESREIPL-----P-EAGSVSGVSGDFDSDELRFSYSSFT--TPPTVYRYDLATGEL 408 (414)
T ss_dssp T-TEEEEEEES-----S-SSSEEEEEES-TT-SEEEEEEEETT--EEEEEEEEETTTTCE
T ss_pred CCCcEEeeecC-----C-cceEEeccCCCCCCCEEEEEEeCCC--CCCEEEEEECCCCCE
Confidence 8 333333321 1 1111122221223445555566664 245899999999874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=93.48 E-value=5.7 Score=38.86 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=78.9
Q ss_pred EEEEECCEEEEEcccCCCCCCceEEEEEECCCCcE--EEeeccC-CCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeE
Q 007111 51 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAKG-DIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 51 s~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~g-~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v 126 (617)
+++...+++|+|-|. .+|+|+...... ..+.... .+| ....++..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p-~~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP-SPVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC-CCccEEEEECCCCEEEEECC--------CEE
Confidence 445556999999764 589988752222 2222111 122 23444443333 78999844 357
Q ss_pred EEEECCCCcEE---EeecCCCCCC--CCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEe-----ec-CC
Q 007111 127 HMFDLKSLTWL---PLHCTGTGPS--PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-----KI-RG 194 (617)
Q Consensus 127 ~~yD~~t~~W~---~l~~~g~~P~--~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~-----~~-~g 194 (617)
|+|+..+..+. .+... .+|. .... ++.... +..+|+|-|. ..|+||...++...- .. -.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~-~~~~~~~~iD-AA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v~~~yP~~i~~~w~ 144 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDL-GFPPTVKQID-AALRWPDNGKTYFFKGD-------KYWRYDEKTQKMDPGYPKLIETDFP 144 (194)
T ss_pred EEEcCcccccCCCcchhhc-CCCCCCCCcc-EEEEEcCCCEEEEEeCC-------EEEEEeCCCccccCCCCcchhhcCC
Confidence 88876542221 11100 1111 1222 333333 3449999884 488998765543211 00 01
Q ss_pred CCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 195 FHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 195 ~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
..|.. -.++... ++++|++-| +..|+||..+.+
T Consensus 145 g~p~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 145 GVPDK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CcCCC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 12222 2233334 489999988 458999987765
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=24 Score=42.28 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=68.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccCCCCCCcceeEEEE---ECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~P~~R~~~s~~~---~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++.+++.||.+. .+.+||+.+.. ...+.. . ....++. .++.+++.|+.++ .+.+||+
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~----~---~~v~~v~~~~~~g~~latgs~dg------~I~iwD~ 647 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT----K---ANICCVQFPSESGRSLAFGSADH------KVYYYDL 647 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec----C---CCeEEEEEeCCCCCEEEEEeCCC------eEEEEEC
Confidence 456777777632 57888877653 222221 1 1111222 2467777776543 5889998
Q ss_pred CCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC----cEEEeecCCCCCCCCcceEE
Q 007111 132 KSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----IWTRIKIRGFHPSPRAGCCG 205 (617)
Q Consensus 132 ~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~----~W~~~~~~g~~P~~R~~ha~ 205 (617)
.+.. ...+. +. ..+ -..+...++. .++.|+.++ .+-.||+.+. .|..+...... ........
T Consensus 648 ~~~~~~~~~~~--~h-~~~--V~~v~f~~~~-~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~ 715 (793)
T PLN00181 648 RNPKLPLCTMI--GH-SKT--VSYVRFVDSS-TLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGH-TNVKNFVG 715 (793)
T ss_pred CCCCccceEec--CC-CCC--EEEEEEeCCC-EEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCC-CCCeeEEE
Confidence 7543 22221 10 001 1122233556 667777664 3778887542 23322221101 11111111
Q ss_pred EEECCEEEEEecCCCCCccceEEEEECCC
Q 007111 206 VLCGTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 206 v~~~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
...++.+++.|+.++ .+.+|+...
T Consensus 716 ~s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 716 LSVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred EcCCCCEEEEEeCCC-----EEEEEECCC
Confidence 222566667776543 466777543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=93.10 E-value=14 Score=39.40 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=102.2
Q ss_pred EEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEEC--CCCc
Q 007111 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDL--KSLT 135 (617)
Q Consensus 60 yV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~--~t~~ 135 (617)
+++|++.........++.||..+.++..+... ...-...-++. .++.||+...... ....+..|+. .+.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~---~~~~~Ps~l~~~~~~~~LY~~~e~~~---~~g~v~~~~i~~~~g~ 75 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV---AEGENPSWLAVSPDGRRLYVVNEGSG---DSGGVSSYRIDPDTGT 75 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE---EESSSECCEEE-TTSSEEEEEETTSS---TTTEEEEEEEETTTTE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee---cCCCCCceEEEEeCCCEEEEEEcccc---CCCCEEEEEECCCcce
Confidence 35677755334445677788899999888732 12212222333 3568888865431 1234555544 4467
Q ss_pred EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeec------CCC---CCCCCcce
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKI------RGF---HPSPRAGC 203 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~------~g~---~P~~R~~h 203 (617)
.+.+. ..+......+.+.+ ++++||+.- +.+ ..+..|++..+ .-..... .+. ....-.-|
T Consensus 76 L~~~~---~~~~~g~~p~~i~~~~~g~~l~van-y~~----g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 76 LTLLN---SVPSGGSSPCHIAVDPDGRFLYVAN-YGG----GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp EEEEE---EEEESSSCEEEEEECTTSSEEEEEE-TTT----TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred eEEee---eeccCCCCcEEEEEecCCCEEEEEE-ccC----CeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 87774 33322222233333 566566653 221 34777877653 2222210 011 11222235
Q ss_pred EEEEE--CCEEEEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 204 CGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 204 a~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
.+... +..+|+..= ..+.+++|+++... ........ .....+....++.. +...+|++... .+
T Consensus 148 ~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~---~~~G~GPRh~~f~p-dg~~~Yv~~e~----s~ 214 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIK---VPPGSGPRHLAFSP-DGKYAYVVNEL----SN 214 (345)
T ss_dssp EEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEE---CSTTSSEEEEEE-T-TSSEEEEEETT----TT
T ss_pred eEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccc---cccCCCCcEEEEcC-CcCEEEEecCC----CC
Confidence 55554 346777632 13568888887665 54432211 12333444444443 45789998765 45
Q ss_pred eEEEEECCC
Q 007111 280 QVEVLSIEK 288 (617)
Q Consensus 280 dV~vyd~~~ 288 (617)
.|.+|+...
T Consensus 215 ~v~v~~~~~ 223 (345)
T PF10282_consen 215 TVSVFDYDP 223 (345)
T ss_dssp EEEEEEEET
T ss_pred cEEEEeecc
Confidence 777777773
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=93.04 E-value=11 Score=37.90 Aligned_cols=215 Identities=14% Similarity=0.060 Sum_probs=111.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+|+..-. ...++++++.+..-..... |. ..+++.. ++.+|+... ..+.++|+.+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS--------GGIAVVDPDT 69 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET--------TCEEEEETTT
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc--------CceEEEecCC
Confidence 5778877322 2379999999998776652 33 3334443 678888742 2356779999
Q ss_pred CcEEEeecC--CCCCCCCcccEEEEECCcEEEEEccCC-CCCCC--CeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 007111 134 LTWLPLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTL--NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 134 ~~W~~l~~~--g~~P~~R~~h~a~~~~~~~LyV~GG~~-~~~~~--n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
.+++.+... +..+..+..-.++.-+++ +|+.--.. ..... ..++++++. ++...+... ..+. ..++..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~p-NGi~~s 142 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGFP-NGIAFS 142 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESSE-EEEEEE
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecC----cccc-cceEEC
Confidence 999887422 111333333333333455 77653221 11111 679999998 676666442 1111 234443
Q ss_pred --CCEEEEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 209 --GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 209 --~~~IyI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
+..+|+.--. ...+|+|++.... +....... ..+......--..+. ..+.||+..-. .+.|++|
T Consensus 143 ~dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~g~pDG~~vD--~~G~l~va~~~----~~~I~~~ 210 (246)
T PF08450_consen 143 PDGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFI-DFPGGPGYPDGLAVD--SDGNLWVADWG----GGRIVVF 210 (246)
T ss_dssp TTSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEE-E-SSSSCEEEEEEEB--TTS-EEEEEET----TTEEEEE
T ss_pred Ccchheeecccc-----cceeEEEeccccccceeeeeeEE-EcCCCCcCCCcceEc--CCCCEEEEEcC----CCEEEEE
Confidence 4467775322 2459999986432 33221110 001111112223333 34678876221 2389999
Q ss_pred ECCCCccccccccccCccCCceeeeccCC
Q 007111 285 SIEKNESSMGRRSTPNAKGPGQLLFEKRS 313 (617)
Q Consensus 285 d~~~~~W~~~w~~~~~~~~~~v~vfGG~~ 313 (617)
+++... ..... .+. ..+.-+.|||..
T Consensus 211 ~p~G~~-~~~i~-~p~-~~~t~~~fgg~~ 236 (246)
T PF08450_consen 211 DPDGKL-LREIE-LPV-PRPTNCAFGGPD 236 (246)
T ss_dssp ETTSCE-EEEEE--SS-SSEEEEEEESTT
T ss_pred CCCccE-EEEEc-CCC-CCEEEEEEECCC
Confidence 998443 12121 221 345556788764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=18 Score=40.02 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=78.4
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
..+|.+|+.+++-+.+. ..+..-........+.+|++.....+ ..++|++|+.+...+++.. .+. ....
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~---~~~-~~~~ 291 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---GRS-NNTE 291 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC---CCC-CcCc
Confidence 46999999888766654 22221111111122345665543322 2469999999988887731 111 1111
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
....-+++.|+......+ ...+|.+|+.++....+...+ ......+....+..|++.+...+ ...++.+|+
T Consensus 292 ~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~---~~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl 362 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG---SQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDL 362 (429)
T ss_pred eEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC---CCccCEEECCCCCEEEEEEccCC---CceEEEEEC
Confidence 222224553443332222 247999999888777664321 11111121222344544443222 246899999
Q ss_pred CCCcEEEee
Q 007111 233 LKGEWSVAI 241 (617)
Q Consensus 233 ~~~~W~~l~ 241 (617)
.+..+..+.
T Consensus 363 ~~g~~~~Lt 371 (429)
T PRK03629 363 ATGGVQVLT 371 (429)
T ss_pred CCCCeEEeC
Confidence 999888775
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.3 Score=46.47 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=64.8
Q ss_pred CCCCcccEEEEECCc-EEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCcc
Q 007111 146 PSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 224 (617)
Q Consensus 146 P~~R~~h~a~~~~~~-~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~ 224 (617)
-.|++|.-++...-. -||+.| .+ ++||+++++.++|-..-.. ..+-.+++.+---..++.+||..+
T Consensus 131 RIP~~GRDm~y~~~scDly~~g-sg-----~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g---- 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVG-SG-----SEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDG---- 197 (703)
T ss_pred ecCcCCccccccCCCccEEEee-cC-----cceEEEEcccccccccccc---ccccceeeeecCccceEEecccCc----
Confidence 344555555554322 244443 32 4699999999999654332 112222222222346778888654
Q ss_pred ceEEEEECCCCcEEEeecCCCC---CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 225 AETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 225 ~~v~~yDl~~~~W~~l~~~~~~---~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+..+|+....-......+.. .|......+..++...+++-=+.+|-..| .|++||+.+.+
T Consensus 198 -~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa~~ 261 (703)
T KOG2321|consen 198 -VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRASK 261 (703)
T ss_pred -eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEcccCC
Confidence 478888876542222111111 12222223333444444454555665543 67888887654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=92.47 E-value=13 Score=37.37 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=100.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
+.+.+||+.+.+....-. ...... ..+....++.+|+.++.+ ..+.+||+.+..-...
T Consensus 53 ~~v~~~d~~~~~~~~~~~----------~~~~~~-~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~----- 110 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLP----------SGPDPE-LFALHPNGKILYIANEDD------NLVTVIDIETRKVLAE----- 110 (300)
T ss_pred CeEEEEECCCCcEEEecc----------CCCCcc-EEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeE-----
Confidence 458888888776543211 001111 111111244566665431 2688999987642211
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~ 172 (617)
++......+++. -++.+++++..+. +.++.||..+..-......+..| .+.+..-++..+++.+..+
T Consensus 111 ~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~s~dg~~l~~~~~~~--- 178 (300)
T TIGR03866 111 IPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP----RFAEFTADGKELWVSSEIG--- 178 (300)
T ss_pred eeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc----cEEEECCCCCEEEEEcCCC---
Confidence 111111122333 3566666654432 24566788765432211111111 1222233555344433223
Q ss_pred CCCeEEEEECCCCcEEE-eecC--CCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 173 TLNDLYSLDFETMIWTR-IKIR--GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~-~~~~--g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
..+..||+.+.+... +... +..+.......++.. +..+|+..+.. +.+.+||..+.+-.... .
T Consensus 179 --~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~~~--~--- 246 (300)
T TIGR03866 179 --GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLDYL--L--- 246 (300)
T ss_pred --CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEEEE--E---
Confidence 358999998765432 2111 001111111222222 34556654432 35889998654432211 1
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.... ...+.+.. +...||+..+.+ +.|.+||+.+.+
T Consensus 247 -~~~~-~~~~~~~~-~g~~l~~~~~~~----~~i~v~d~~~~~ 282 (300)
T TIGR03866 247 -VGQR-VWQLAFTP-DEKYLLTTNGVS----NDVSVIDVAALK 282 (300)
T ss_pred -eCCC-cceEEECC-CCCEEEEEcCCC----CeEEEEECCCCc
Confidence 0111 11223332 234455444432 379999998865
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=92.38 E-value=15 Score=37.77 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=99.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC-----CcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET-----ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t-----~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD 130 (617)
.+++|++.|.... .++.|.... +.+...- .+|.+-.|...++++|.+|..-. ..+.+.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5678888876432 566664322 2222222 35666667777778888888743 367899999
Q ss_pred CCCCcEE---EeecCCC---CCCCCcccEEE--EECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 131 LKSLTWL---PLHCTGT---GPSPRSNHVAA--LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 131 ~~t~~W~---~l~~~g~---~P~~R~~h~a~--~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
+.+..-. .++-.+- .|....+++-+ .+|...|+|+=......-.=.|-+.|+.+..-.+..... .+.+..+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-~~k~~~~ 174 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-YPKRSAG 174 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec-cCchhhc
Confidence 9998644 3421111 11111122211 123333655543332211123566777665444433321 2333333
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEc
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 271 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~G 271 (617)
. +..+-|.+|++...+... ..=.+.||+.+++=..+.. ..+.....++++-.. .-+..||+.-
T Consensus 175 n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i---~f~~~~~~~~~l~YN-P~dk~LY~wd 237 (250)
T PF02191_consen 175 N-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI---PFPNPYGNISMLSYN-PRDKKLYAWD 237 (250)
T ss_pred c-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceee---eeccccCceEeeeEC-CCCCeEEEEE
Confidence 3 333467888887654332 2224899998876554321 122222234444333 3346677654
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=29 Score=41.56 Aligned_cols=184 Identities=12% Similarity=0.100 Sum_probs=86.5
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
+..++.|+.+ ..+.+||..+......- .... ..-.+++. .++.+++.||.++ .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~---~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEM---KEHE-KRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEe---cCCC-CCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4455556552 25788888766432211 0011 11122222 2457777777654 3788888765
Q ss_pred cE-EEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEE
Q 007111 135 TW-LPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 135 ~W-~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
.- ..+. . .....++.+ ++. ++++|+.++ .|..||+.+.. ...+... ..+ -..+...
T Consensus 609 ~~~~~~~--~-----~~~v~~v~~~~~~g~-~latgs~dg-----~I~iwD~~~~~~~~~~~~~h---~~~--V~~v~f~ 670 (793)
T PLN00181 609 VSIGTIK--T-----KANICCVQFPSESGR-SLAFGSADH-----KVYYYDLRNPKLPLCTMIGH---SKT--VSYVRFV 670 (793)
T ss_pred cEEEEEe--c-----CCCeEEEEEeCCCCC-EEEEEeCCC-----eEEEEECCCCCccceEecCC---CCC--EEEEEEe
Confidence 42 2221 1 111122222 244 777777664 59999986543 1111110 111 1223333
Q ss_pred CCEEEEEecCCCCCccceEEEEECCCC----cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILKG----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~~----~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
++..++.|+..+ .+.+||+... .|..+...... . .....+.+.. .+.+++.|+.++ .|.+|
T Consensus 671 ~~~~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~gh--~--~~i~~v~~s~--~~~~lasgs~D~----~v~iw 735 (793)
T PLN00181 671 DSSTLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMGH--T--NVKNFVGLSV--SDGYIATGSETN----EVFVY 735 (793)
T ss_pred CCCEEEEEECCC-----EEEEEeCCCCccccCCcceEEEcCC--C--CCeeEEEEcC--CCCEEEEEeCCC----EEEEE
Confidence 566666666542 3667777542 22222111100 0 0111222322 244777888654 57777
Q ss_pred ECCCC
Q 007111 285 SIEKN 289 (617)
Q Consensus 285 d~~~~ 289 (617)
+....
T Consensus 736 ~~~~~ 740 (793)
T PLN00181 736 HKAFP 740 (793)
T ss_pred ECCCC
Confidence 76543
|
|
| >PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.62 Score=44.33 Aligned_cols=107 Identities=23% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhh-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcc
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEK-------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 544 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~ 544 (617)
...+.++++++.+||.||++++.+++..++ .+....+..++||++.....++++.+.+|+.-+ +...+...+
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v-L~~~~~~~~ 97 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV-LQLDDSGVL 97 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-hcccccccc
Confidence 345667888999999999977766665554 444556677777777777777887777774322 222222222
Q ss_pred cccccC-----------CCcchhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 545 SNIVHS-----------DNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 545 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
+-.+.+ .+..+ +=.-|+.++...++-|+|-++=++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l--~d~el~~l~~ql~~hl~s~~~n~~ 143 (160)
T PF13094_consen 98 ELPELPQKSLLEASESRFAPTL--CDEELLPLLKQLNKHLESMQNNLQ 143 (160)
T ss_pred ccccccccccccccccccCccc--chHHHHHHHHHHHHHHHHHHccHH
Confidence 221211 23334 123456666666687887777654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=22 Score=39.18 Aligned_cols=148 Identities=12% Similarity=0.045 Sum_probs=77.4
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|++|+.+..=..+. ..+..-. .....-+ ..|++....++ ..++|.+|..+....++.. -. ....
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~~~-~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGSNS-APAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ---SS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCCcc-ceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC---CC-CCCc
Confidence 46999999888655554 2221111 1112223 45655444333 3679999998887776631 11 1111
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.....-+++.|++.....+ ...+|.+|..++....+...+ ......+....+..|+......+ ...++++|
T Consensus 288 ~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g---~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d 358 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG---SYNTSPRISPDGKLLAYISRVGG---AFKLYVQD 358 (427)
T ss_pred CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC---CCcCceEECCCCCEEEEEEccCC---cEEEEEEE
Confidence 2223335564554432222 246999998888777765321 11111122222445554443221 13689999
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+.....+.
T Consensus 359 ~~~g~~~~lt 368 (427)
T PRK02889 359 LATGQVTALT 368 (427)
T ss_pred CCCCCeEEcc
Confidence 9888877664
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=91.88 E-value=20 Score=38.25 Aligned_cols=252 Identities=15% Similarity=0.175 Sum_probs=119.7
Q ss_pred EEEecCCCCCccce--EEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 2 IVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 2 ~V~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
+++|+... +.... ++.||..+.++..+..... . ..+. ..+.-.-++.||+..... .....-..|.++
T Consensus 2 ~~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~-~-------~~Ps-~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~ 70 (345)
T PF10282_consen 2 LYVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE-G-------ENPS-WLAVSPDGRRLYVVNEGS-GDSGGVSSYRID 70 (345)
T ss_dssp EEEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE-S-------SSEC-CEEE-TTSSEEEEEETTS-STTTEEEEEEEE
T ss_pred EEEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC-C-------CCCc-eEEEEeCCCEEEEEEccc-cCCCCEEEEEEC
Confidence 46777654 22233 4556668999987764210 0 0111 112222366888886542 112223455556
Q ss_pred CCCCcEEEeeccCCCC-CCcceeEEEE-EC-CEEEEEeecCCCCCccCeEEEEECCCCc-EEEe------ecCCCCC---
Q 007111 80 TETECWSVVEAKGDIP-VARSGHTVVR-AS-SVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPL------HCTGTGP--- 146 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P-~~R~~~s~~~-~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l------~~~g~~P--- 146 (617)
..+.+.+.+.. .+ .....+.++. -+ ..+|+. .+. ...+.+|++..+. -... ...++-|
T Consensus 71 ~~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq 141 (345)
T PF10282_consen 71 PDTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ 141 (345)
T ss_dssp TTTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT
T ss_pred CCcceeEEeee---eccCCCCcEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCccccc
Confidence 66578877763 33 2333233333 23 355554 222 3467888887642 2111 0011211
Q ss_pred CCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC
Q 007111 147 SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK 222 (617)
Q Consensus 147 ~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~ 222 (617)
..-.-|.+... +++++|+.. .. .+.|+.|+..... .........++-.--.|....- +..+|++.-.+
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~d-lG----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--- 213 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPD-LG----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS--- 213 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEE-TT----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---
T ss_pred ccccceeEEECCCCCEEEEEe-cC----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC---
Confidence 22333455544 456576653 11 3568888886655 6553322111111112322222 45899997654
Q ss_pred ccceEEEEECC--CCcEEEeecCCCC--CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 223 RHAETLIFDIL--KGEWSVAITSPSS--SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 223 ~~~~v~~yDl~--~~~W~~l~~~~~~--~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.+.+|+.. ...|+.+...+.. ........+.+.+. .+..+||+.-.. .+.|.+|++..
T Consensus 214 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~----~~sI~vf~~d~ 276 (345)
T PF10282_consen 214 --NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRG----SNSISVFDLDP 276 (345)
T ss_dssp --TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECT----TTEEEEEEECT
T ss_pred --CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe-cCCCEEEEEecc----CCEEEEEEEec
Confidence 345555544 6666665543222 12222234444444 345677775432 45788888843
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=21 Score=38.17 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=87.2
Q ss_pred EEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEE
Q 007111 51 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMF 129 (617)
Q Consensus 51 s~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~y 129 (617)
++...++..|+.|.. ..+++=.-.-.+|+.+......|. ..+.+..++ +.+|+.|.. ..+++-
T Consensus 94 ~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~S 157 (334)
T PRK13684 94 SISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYRT 157 (334)
T ss_pred eeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEEE
Confidence 333345566766532 134443334568998863211222 222333333 455655432 234554
Q ss_pred ECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEE-ECCCCcEEEeecCCCCCCCCcceEEEEE
Q 007111 130 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 130 D~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~y-D~~t~~W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
+-.-.+|+.+. .+..-.-+.+....+..++++|.. + .++.- |....+|+.+.. +..+..++++..
T Consensus 158 ~DgG~tW~~~~----~~~~g~~~~i~~~~~g~~v~~g~~-G-----~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~ 223 (334)
T PRK13684 158 TDGGKNWEALV----EDAAGVVRNLRRSPDGKYVAVSSR-G-----NFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQ 223 (334)
T ss_pred CCCCCCceeCc----CCCcceEEEEEECCCCeEEEEeCC-c-----eEEEEcCCCCCeEEEeeC----CCcccceeeeEc
Confidence 44567899874 122223344444555534444433 2 24433 444467998854 334444555554
Q ss_pred -CCEEEEEecCCCCCccceEEEEE-C-CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCC
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFD-I-LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yD-l-~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
++.+|++|... ..++. . .-.+|+.+..+. .....+...+.+. ..+.++++|..
T Consensus 224 ~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~~---~~~~~~l~~v~~~--~~~~~~~~G~~ 279 (334)
T PRK13684 224 PDGNLWMLARGG-------QIRFNDPDDLESWSKPIIPE---ITNGYGYLDLAYR--TPGEIWAGGGN 279 (334)
T ss_pred CCCCEEEEecCC-------EEEEccCCCCCccccccCCc---cccccceeeEEEc--CCCCEEEEcCC
Confidence 67788887532 22332 2 335899754211 1111222222222 23568887764
|
|
| >KOG3215 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.75 E-value=2.7 Score=41.08 Aligned_cols=139 Identities=20% Similarity=0.271 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHHHHHHhchhh------HhHHHH-hhcHHHHhhhhhh--------------hhhhHHHHHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILE------GQLAAA-LVNREAAEKNFSS--------------VLKSRQEMEKKLADSLKE 523 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~------~q~~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 523 (617)
....+...+++..+..+.+.-| ++++-| |+++.+-|=.+.- .-+=+.++|.+++..-.+
T Consensus 32 dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~k 111 (222)
T KOG3215|consen 32 DRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNK 111 (222)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665555555 566655 6666666543221 123456788888888899
Q ss_pred HHHHHHHHhhhHHh---HHhhhcccccccCCCcchh--hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHH
Q 007111 524 MELLKEKLAGLELA---QEEANSLSNIVHSDNVRLE--HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 598 (617)
Q Consensus 524 ~~~lkek~~~~e~~---qe~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (617)
+|+||-.|+.++.. |+|+-.|+|++..--.|-| .++--||-++++..-+=-||-.-|-+-| .-|++=+-+-|=-
T Consensus 112 ie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~klelrR-kqf~~lm~~~~el 190 (222)
T KOG3215|consen 112 IELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLELRR-KQFKYLMVSTEEL 190 (222)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-hcchHHHhhHHHH
Confidence 99999999998874 5999999999999899998 4577888888887777777766665533 4455544333222
Q ss_pred HHHhhhhc
Q 007111 599 QRLQSLEN 606 (617)
Q Consensus 599 ~~~~~~~~ 606 (617)
| +.||+
T Consensus 191 Q--~amed 196 (222)
T KOG3215|consen 191 Q--CAMED 196 (222)
T ss_pred H--hhhhh
Confidence 2 35654
|
|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.8 Score=51.38 Aligned_cols=79 Identities=38% Similarity=0.367 Sum_probs=54.7
Q ss_pred HHHHHHh----hhHHhHHhhhcccccccCCCc-----------------chhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 526 LLKEKLA----GLELAQEEANSLSNIVHSDNV-----------------RLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 526 ~lkek~~----~~e~~qe~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
.|||... .+|.+|++-++|++...+.+- .+..++.-.+-=++-++|||--+-|-++.--
T Consensus 361 ~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~ 440 (1174)
T KOG0933|consen 361 KLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATAS 440 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 3555543 467788889999999998876 2233344444456667777777766666544
Q ss_pred cccc-------cchhhHHHHHHHHhhh
Q 007111 585 ARAF-------QLQVEVFHLKQRLQSL 604 (617)
Q Consensus 585 ~~~~-------~~~~~~~~~~~~~~~~ 604 (617)
+|+- ++|.||.+|+.+|+++
T Consensus 441 ~~~~~~~~~ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 441 AEYVKDIEELDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433 5789999999999987
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=91.66 E-value=20 Score=37.84 Aligned_cols=221 Identities=14% Similarity=0.123 Sum_probs=95.6
Q ss_pred CCCcEEEccccccCCCCCCCCCCC-cccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce
Q 007111 22 DRFSWTAASSKLYLSPSSLPLKIP-ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 100 (617)
Q Consensus 22 ~t~~W~~l~~~~~~~p~~~~~~~p-~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~ 100 (617)
.-.+|...... ...+ .....++...++..|++|.. .-++.-.-.-.+|+.++....+ +...
T Consensus 45 GG~tW~~~~~~---------~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~l--pgs~ 106 (302)
T PF14870_consen 45 GGKTWQPVSLD---------LDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKL--PGSP 106 (302)
T ss_dssp TTSS-EE--------------S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----TT---SS-E
T ss_pred CCccccccccC---------CCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCCCC--CCCe
Confidence 34569887642 1112 11234455568889988742 1244444456789998743223 3333
Q ss_pred eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEE
Q 007111 101 HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 101 ~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~ 179 (617)
+.+..+ ++.++++|.. ..+|+-.-.-.+|+.+.. +..-.-..+....+..++++|... . -+..
T Consensus 107 ~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G-~----~~~s 170 (302)
T PF14870_consen 107 FGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSRG-N----FYSS 170 (302)
T ss_dssp EEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETTS-S----EEEE
T ss_pred eEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECcc-c----EEEE
Confidence 444444 5577777532 235554445668998742 111111123333444355555433 1 2346
Q ss_pred EECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEE--CCCCcEEEeecCCCCCCCCCcceEE
Q 007111 180 LDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFTL 256 (617)
Q Consensus 180 yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yD--l~~~~W~~l~~~~~~~p~~r~~~s~ 256 (617)
.|+....|...... ..|.-.++... ++.++++. ..+ .+.+-+ -....|.... .|....++..
T Consensus 171 ~~~G~~~w~~~~r~----~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~-----~~~~~~~~~~ 235 (302)
T PF14870_consen 171 WDPGQTTWQPHNRN----SSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI-----IPIKTNGYGI 235 (302)
T ss_dssp E-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B------TTSS--S-E
T ss_pred ecCCCccceEEccC----ccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc-----CCcccCceee
Confidence 68888889988763 44555555555 66777765 211 244444 3345677732 2222334443
Q ss_pred EEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCccccccc
Q 007111 257 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRR 296 (617)
Q Consensus 257 v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~~w~ 296 (617)
.-+.....+.+++.||.. .+++-.=....|.+...
T Consensus 236 ld~a~~~~~~~wa~gg~G-----~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 236 LDLAYRPPNEIWAVGGSG-----TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp EEEEESSSS-EEEEESTT------EEEESSTTSS-EE-GG
T ss_pred EEEEecCCCCEEEEeCCc-----cEEEeCCCCccceECcc
Confidence 334444568899999974 34444444556765433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.58 E-value=6.8 Score=43.05 Aligned_cols=212 Identities=15% Similarity=0.200 Sum_probs=106.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccCCCCCCccee-EEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGH-TVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~P~~R~~~-s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+|+++.+|+..+ .|-+||..+.. -+.+. ...++... -.+..++.+++.|+-+.. +-.+|..+
T Consensus 79 DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~----ah~apv~~~~f~~~d~t~l~s~sDd~v------~k~~d~s~ 142 (487)
T KOG0310|consen 79 DGRLLAAGDESG------HVKVFDMKSRVILRQLY----AHQAPVHVTKFSPQDNTMLVSGSDDKV------VKYWDLST 142 (487)
T ss_pred CCeEEEccCCcC------cEEEeccccHHHHHHHh----hccCceeEEEecccCCeEEEecCCCce------EEEEEcCC
Confidence 689999988632 58888855522 11111 01111111 123457788888865432 33445444
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE--CC
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC--GT 210 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R~~ha~v~~--~~ 210 (617)
.. ......+.--.-|++ ++....+. |++.|||++. |-.||+.+. .|..--..| .|.. .++++ +.
T Consensus 143 a~-v~~~l~~htDYVR~g-~~~~~~~h-ivvtGsYDg~-----vrl~DtR~~~~~v~elnhg---~pVe--~vl~lpsgs 209 (487)
T KOG0310|consen 143 AY-VQAELSGHTDYVRCG-DISPANDH-IVVTGSYDGK-----VRLWDTRSLTSRVVELNHG---CPVE--SVLALPSGS 209 (487)
T ss_pred cE-EEEEecCCcceeEee-ccccCCCe-EEEecCCCce-----EEEEEeccCCceeEEecCC---Ccee--eEEEcCCCC
Confidence 44 233333332333322 12223456 9999999975 888888766 554332222 2222 23333 35
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.|.-.||. .+-++|+.++.=... ....-....++-.+. .++.-++-||.++ .|-+||..+-+
T Consensus 210 ~iasAgGn-------~vkVWDl~~G~qll~-----~~~~H~KtVTcL~l~--s~~~rLlS~sLD~----~VKVfd~t~~K 271 (487)
T KOG0310|consen 210 LIASAGGN-------SVKVWDLTTGGQLLT-----SMFNHNKTVTCLRLA--SDSTRLLSGSLDR----HVKVFDTTNYK 271 (487)
T ss_pred EEEEcCCC-------eEEEEEecCCceehh-----hhhcccceEEEEEee--cCCceEeeccccc----ceEEEEccceE
Confidence 56666663 355666653321111 000011222222222 2335567788765 47888855433
Q ss_pred cccccc------cccCccCCceeeeccCCC
Q 007111 291 SSMGRR------STPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 291 W~~~w~------~~~~~~~~~v~vfGG~~~ 314 (617)
-...|. .++...+++.++.|...+
T Consensus 272 vv~s~~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 272 VVHSWKYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEEeeecccceeeEEecCCCceEEEecccc
Confidence 222232 233445778888987744
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=91.51 E-value=14 Score=35.74 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=66.7
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC-CEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+.+++.|+.+ ..+..||+.+......- . .....-.++.... +.+++.|+.+ ..+.+||+.+.+
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccc
Confidence 4566666532 35888998755432221 1 1111122233333 3444444312 358889987543
Q ss_pred E-EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEE
Q 007111 136 W-LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWY 213 (617)
Q Consensus 136 W-~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~-~~Iy 213 (617)
- ..+. ... ..-.++....+...+++|+.+ ..+..||+.+........ .....-.++.... +.++
T Consensus 169 ~~~~~~----~~~-~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 169 CVATLT----GHT-GEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLL 234 (289)
T ss_pred cceeEe----cCc-cccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEE
Confidence 2 2221 111 111233333333245555553 348899987654433221 1111223334333 4555
Q ss_pred EEecCCCCCccceEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+.++.. ..+++||+.+..
T Consensus 235 ~~~~~~-----~~i~i~~~~~~~ 252 (289)
T cd00200 235 ASGSED-----GTIRVWDLRTGE 252 (289)
T ss_pred EEEcCC-----CcEEEEEcCCce
Confidence 555423 348888887543
|
|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=2.5 Score=46.78 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc---ccc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS---LSN 546 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~---~~~ 546 (617)
..+.++..+..+...|+.||..+.....++++.+..+-+...++++++++..++++.+++.++..-.+.-...+ |.-
T Consensus 65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~v 144 (428)
T PRK11637 65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQL 144 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 33445555555555566666666666666666666665566666666666666666666666655555544333 334
Q ss_pred cccCCCc
Q 007111 547 IVHSDNV 553 (617)
Q Consensus 547 ~~~~~~~ 553 (617)
+..+++.
T Consensus 145 Ll~a~~~ 151 (428)
T PRK11637 145 ILSGEES 151 (428)
T ss_pred HhcCCCh
Confidence 5666655
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=91.07 E-value=26 Score=37.95 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=77.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
..+++||+.+.....+... .. .....+....+..|++..... ....+|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~----------~~-~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~- 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF----------PG-MNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGP- 277 (417)
T ss_pred cEEEEEECCCCCEEEeecC----------CC-CccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCC-
Confidence 4688889888766555431 11 111111112234565543321 1246999999988877765321
Q ss_pred CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-ECCcEEEEEccCCCCC
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-YDDKNLLIFGGSSKSK 172 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~~~~~LyV~GG~~~~~ 172 (617)
...........+.+|++.....+ ...+|++|..+..+..+...+ .+....+. -+++ .+++.....
T Consensus 278 --~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~-~i~~~~~~~-- 343 (417)
T TIGR02800 278 --GIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGD-LIAFVHREG-- 343 (417)
T ss_pred --CCCCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCC-EEEEEEccC--
Confidence 11111111112335555433322 247999999998888774221 12222233 3455 455544432
Q ss_pred CCCeEEEEECCCCcEEEee
Q 007111 173 TLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~ 191 (617)
....++.+|+.++.+..+.
T Consensus 344 ~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 344 GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CceEEEEEeCCCCCeEEcc
Confidence 2346999999887776554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.98 Score=51.25 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=46.4
Q ss_pred CCchHHH-HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 007111 463 GPSSIYQ-FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 524 (617)
Q Consensus 463 ~~~~~~~-~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (617)
|..++.| .-=+|+-+-++.+++|+..+..-...++.-+..|-+++..++++||.+.+.++.+
T Consensus 466 SK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 466 SKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444443 4456677778888888888888888888888888888999999988877655544
|
|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.8 Score=43.13 Aligned_cols=81 Identities=22% Similarity=0.217 Sum_probs=50.3
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcch
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 555 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~ 555 (617)
-.+..+...|+.||+++.+.+.++..+.. ....+|+.++++..+..+.|+++.+.+...-++ +
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~--------------~ 151 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV--------------A 151 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence 34445556777777777777777666544 455667777777766666666666655332222 5
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 007111 556 EHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~ 573 (617)
..++..|+|-+++.|++.
T Consensus 152 ~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 152 QKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666644
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=90.83 E-value=8.4 Score=34.89 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=55.3
Q ss_pred EECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-CccceEEEEE-CC
Q 007111 156 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD-IL 233 (617)
Q Consensus 156 ~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~-~~~~~v~~yD-l~ 233 (617)
.++|- +|-..-. .....+.|..||..+.+|+.+..............++.++|++-++.-.... ...-++|+++ ..
T Consensus 3 cinGv-ly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGV-LYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcE-EEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 34555 4443333 3344577999999999999887621223445566777789998887654332 2346789885 55
Q ss_pred CCcEEEeec
Q 007111 234 KGEWSVAIT 242 (617)
Q Consensus 234 ~~~W~~l~~ 242 (617)
+..|+....
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 678998754
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=33 Score=37.90 Aligned_cols=146 Identities=7% Similarity=-0.067 Sum_probs=74.8
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|.+|+.+.....+.. .+..-.. ....-++ .|++.....+ ...+|.+|+.+....++... .....
T Consensus 267 ~~I~~~d~~tg~~~~lt~---~~~~~~~-~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~----~~~~~ 334 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTD---GRSNNTE-PTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWE----GSQNQ 334 (429)
T ss_pred cEEEEEECCCCCEEEccC---CCCCcCc-eEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecC----CCCcc
Confidence 369999999988777652 1111111 1112234 4444332221 25799999988877776321 11112
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.....-+++.|++.+...+ ...++.+|+.++.+..+.... .-...+.. -+++.+++.+..+. ...+++.+
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~~~----~~~~p~~S-pDG~~i~~~s~~~~--~~~l~~~~ 404 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTDTF----LDETPSIA-PNGTMVIYSSSQGM--GSVLNLVS 404 (429)
T ss_pred CEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeCCCC----CCCCceEC-CCCCEEEEEEcCCC--ceEEEEEE
Confidence 2222335664544443322 246999999999988775321 01111222 35555555543322 23466777
Q ss_pred CCCCcEEEe
Q 007111 232 ILKGEWSVA 240 (617)
Q Consensus 232 l~~~~W~~l 240 (617)
++...=..+
T Consensus 405 ~~G~~~~~l 413 (429)
T PRK03629 405 TDGRFKARL 413 (429)
T ss_pred CCCCCeEEC
Confidence 655443443
|
|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.34 Score=49.21 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHH-------hhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAA-------LVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
....+.+++.|-++...||..|+.+ ++-++.|++.+..+-+.+..||.+......-++.|..+|..++..-++
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee 110 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEE 110 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888887776655 456666667666677777777777777777888888888877777776
Q ss_pred hhccc-------ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchh---------hhccccccchhhHHHHHHHHhhh
Q 007111 541 ANSLS-------NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA---------GERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 541 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
+..-. +++..+--|.|.-+.-+-.-+.+++.+|+.+..-|- .+|--. +.-.+-+|.++|...
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~--~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDE--YEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH--HHHHHHHHHHHHHHH
Confidence 66422 223333333333345556667788888888877762 222222 234567888999888
Q ss_pred hccC
Q 007111 605 ENRA 608 (617)
Q Consensus 605 ~~~~ 608 (617)
|+|+
T Consensus 189 E~Ra 192 (237)
T PF00261_consen 189 ENRA 192 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=34 Score=37.81 Aligned_cols=190 Identities=13% Similarity=0.062 Sum_probs=102.6
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECC-EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~-~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
+++++|+.+++=..+... +.........-++ +|++.-...+ ..++|.+|..+..++.+..
T Consensus 214 ~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~--- 274 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITN--- 274 (419)
T ss_pred EEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEccc---
Confidence 788888887765555431 1111111122233 5554433211 3589999999999988852
Q ss_pred CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC-
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK- 172 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~- 172 (617)
.+..-....-...+..||+...+.+ ...+|++|+.+...+++...+ .+. ....-+++.|+.........
T Consensus 275 ~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g-----~~~-~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 275 YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHG-----KNN-SSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCC-----CcC-ceECCCCCEEEEEEcCCCccc
Confidence 2221111122223457777765432 357999999999998774222 122 23333566454444322111
Q ss_pred --CCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 173 --TLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 173 --~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
...+++.+|+.++.+..+...+ ... .+....+..|++.... .....++.++++...=..++
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL---GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc---CCcEEEEEEecCCCeeEEee
Confidence 2357999999999998876531 111 2222223445555332 22246888888776544444
|
|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.6 Score=48.32 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=22.8
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
++++..+...++.++..+...++.+++.+..+-+....++.+++.+.++++.|+++++
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444333333333333333333333333333333
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.5 Score=54.50 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHH
Q 007111 557 HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 598 (617)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (617)
.++.-++.-++.+++++...+.-+..-+.+...++-++..++
T Consensus 441 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 482 (1164)
T TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333333333333333333333
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.39 E-value=22 Score=36.72 Aligned_cols=111 Identities=18% Similarity=0.149 Sum_probs=73.2
Q ss_pred EEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEE
Q 007111 102 TVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 180 (617)
Q Consensus 102 s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~y 180 (617)
.... .++.+|.--|..+. +.+..||+.+.+-.... ++|..-++=+++.++++ ||..-=.+ ...++|
T Consensus 49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~-l~qLTWk~-----~~~f~y 115 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDK-LYQLTWKE-----GTGFVY 115 (264)
T ss_dssp EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTE-EEEEESSS-----SEEEEE
T ss_pred cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCE-EEEEEecC-----CeEEEE
Confidence 3444 56899998887664 67999999999865443 67888888899999999 77764332 358999
Q ss_pred ECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 181 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 181 D~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
|+.+- ..+... +-+.-+-.++..+..+|+--|. +.++.+|+.+.+
T Consensus 116 d~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 116 DPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFK 160 (264)
T ss_dssp ETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-S
T ss_pred ccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccc
Confidence 99764 344332 3345667778778888888774 468999998754
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.6 Score=54.17 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=7.6
Q ss_pred HHHHHHHHHhchhhHhHHHH
Q 007111 473 SKMAALIRKNGILEGQLAAA 492 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~ 492 (617)
.++..+-.....++.++..+
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~ 696 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAEL 696 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.27 E-value=33 Score=37.33 Aligned_cols=206 Identities=17% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCC-----CccCeEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKR-----RKLNDLHMF 129 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~-----~~~~~v~~y 129 (617)
+++.++++=. ..++....++++|+.++....-. ++...... ++..++ ..+++...+... .+...++++
T Consensus 134 dg~~la~~~s-~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 134 DGKRLAYSLS-DGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TSSEEEEEEE-ETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCEEEEEec-CCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 5666666532 23344568999999999543322 22222222 444443 444444444322 236789999
Q ss_pred ECCCCcEE--EeecCCCCCCCC--cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC-----cEEEeecCCCCCCCC
Q 007111 130 DLKSLTWL--PLHCTGTGPSPR--SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-----IWTRIKIRGFHPSPR 200 (617)
Q Consensus 130 D~~t~~W~--~l~~~g~~P~~R--~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~-----~W~~~~~~g~~P~~R 200 (617)
...+..-. .+- ..+... +......-++++++|.-... .. .+++|.+|.... .|..+... ..-
T Consensus 208 ~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~-~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~ 278 (414)
T PF02897_consen 208 KLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSG-TS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG 278 (414)
T ss_dssp ETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESS-SS-EEEEEEEECCCTTTSS-SEEEEEES----SSS
T ss_pred ECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcc-cc-CCeEEEEeccccCCCcCCcEEEeCC----CCc
Confidence 98877543 221 112222 22222333556444443332 22 578999999875 78887652 222
Q ss_pred cceEEEEECCEEEEEecCCCCCccceEEEEECCCCc---EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC
Q 007111 201 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 277 (617)
Q Consensus 201 ~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~---W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~ 277 (617)
..+.+...++.+||.-. .+.....+..+++.... |..+-..+ . .......+.+. +++|++.-=.+ .
T Consensus 279 ~~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~---~~~~l~~~~~~---~~~Lvl~~~~~--~ 347 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLIPE-D---EDVSLEDVSLF---KDYLVLSYREN--G 347 (414)
T ss_dssp -EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE---S---SSEEEEEEEEE---TTEEEEEEEET--T
T ss_pred eEEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEcCC-C---CceeEEEEEEE---CCEEEEEEEEC--C
Confidence 23334445999999865 23344678899988765 66432111 1 11112222222 35666544333 2
Q ss_pred CCeEEEEECC
Q 007111 278 SNQVEVLSIE 287 (617)
Q Consensus 278 ~~dV~vyd~~ 287 (617)
...+.++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 4588899988
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
Probab=88.99 E-value=8.6 Score=38.11 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=52.2
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
.+|-.+|..=...-+..-..|..|+++.-.--+..+|.++.+..--..|..-|+.+.+|++.|+.+++.-+.-
T Consensus 12 ~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666777777777777777777777777777777777777777777777777766643
|
|
| >PF15188 CCDC-167: Coiled-coil domain-containing protein 167 | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.61 Score=39.51 Aligned_cols=78 Identities=32% Similarity=0.461 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 505 SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
+|.+-.+.+|+|++.-.+.+|.+.-||-+.|+--| +-..||.|..-||.+++.-+||||.-|+ |=
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e-----------~R~~lE~E~~~l~~~l~~~E~eL~~Lrk----EN 66 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPE-----------ARRSLEKELNELKEKLENNEKELKLLRK----EN 66 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChH-----------HHHHHHHHHHHHHHHhhccHHHHHHHHH----hh
Confidence 35567888999999999999999888888875433 3456889999999999999999999887 88
Q ss_pred cccccchhhHHHH
Q 007111 585 ARAFQLQVEVFHL 597 (617)
Q Consensus 585 ~~~~~~~~~~~~~ 597 (617)
.+.|=|.+=+|-+
T Consensus 67 rK~~~ls~~l~~v 79 (85)
T PF15188_consen 67 RKSMLLSVALFFV 79 (85)
T ss_pred hhhHHHHHHHHHH
Confidence 8888888776644
|
|
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=88.79 E-value=15 Score=37.68 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred CcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCC---
Q 007111 45 PACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR--- 121 (617)
Q Consensus 45 p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~--- 121 (617)
+..+-.|+-..++.+|+.--...+...-+.+.+.+.....|..+.. +-..-....-.+.+++.||+||-....++
T Consensus 189 ~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf--p~nvHhtnlPFakvgD~l~mFgsERA~~EWE~ 266 (367)
T PF12217_consen 189 RNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF--PNNVHHTNLPFAKVGDVLYMFGSERAENEWEG 266 (367)
T ss_dssp TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE---TT---SS---EEEETTEEEEEEE-SSTT-SST
T ss_pred cccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc--cccccccCCCceeeCCEEEEEecccccccccc
Q ss_pred ----------ccCeEEE------EECCCCcEEEeecC---CCCCCCCcccEEEEECCcEE-EEEcc--------------
Q 007111 122 ----------KLNDLHM------FDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDKNL-LIFGG-------------- 167 (617)
Q Consensus 122 ----------~~~~v~~------yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~~~~~L-yV~GG-------------- 167 (617)
+-..+.+ +.++.-+|..+... |..--.-.|-+++++++..| |+|||
T Consensus 267 G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~~npws~gdN~~ 346 (367)
T PF12217_consen 267 GEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDFFNPWSIGDNSR 346 (367)
T ss_dssp T-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S----TTTTTTT
T ss_pred CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcccCCccccccccc
Q ss_pred ---CCCCCCCCeEEEEECC
Q 007111 168 ---SSKSKTLNDLYSLDFE 183 (617)
Q Consensus 168 ---~~~~~~~n~v~~yD~~ 183 (617)
+..+....++|.|.++
T Consensus 347 k~~~~~dGhp~dlY~~rik 365 (367)
T PF12217_consen 347 KAPYKHDGHPADLYCYRIK 365 (367)
T ss_dssp --TTSTT----EEEEEEEE
T ss_pred cCccccCCCCcceEEEEEE
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.4 Score=35.08 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
-=+..|++|+.+++.|+.+-..-....-...+.....-++...+.++++....+++.|++++.+.|
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345678999999999976655444433333333333345666777777777777777877776553
|
The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells. |
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
Probab=88.04 E-value=3.4 Score=44.02 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHHhhhccccccc
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL-AQEEANSLSNIVH 549 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~-~qe~~~~~~~~~~ 549 (617)
|+=+++.+--....|+..++.....++...+.+..+-+-..++..+.+.+.+|.+.||+..+..+. =|+|.+.+.+-+-
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~ 219 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA 219 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555555555555555555555555554443321 1233332222111
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchh------------------hHHHHHHHHhhhhccC
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV------------------EVFHLKQRLQSLENRA 608 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 608 (617)
.++.+++-+|+-+++.|+||..-+.-+..=.++--+++. ||..||.++..||+..
T Consensus 220 ----~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 220 ----EQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 122445555555556666666555555443333333332 5666677766666543
|
|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
Probab=87.95 E-value=3.7 Score=43.47 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.8
Q ss_pred hhHHHHHHHHhhhhccCC
Q 007111 592 VEVFHLKQRLQSLENRAP 609 (617)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~ 609 (617)
-||..||.+++.+|..++
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 588999999999887655
|
This domain is found in cell division proteins which are required for kinetochore-spindle association. |
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.4 Score=51.72 Aligned_cols=53 Identities=26% Similarity=0.293 Sum_probs=37.9
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
.|+.+++-+...+...++++...++.+..=+.|.=+|+.++..+.++++.++.
T Consensus 776 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1163)
T COG1196 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666788888888877777777888888888888776664
|
|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.2 Score=52.47 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=77.9
Q ss_pred HhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHH
Q 007111 487 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 487 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
+.|.+++...+++++. .+..+++++++++.-++++....+++.+..+.+.. .-.+.....--.||..++-+.+-|
T Consensus 63 ~~l~~tL~~L~qi~~~----~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~-~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 63 QDLEQTLALLDKIDRQ----KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEE-TRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccc-ccccccccCHHHHHHHHHHHHHHH
Confidence 3445555555555555 34445677777777777777666666443211111 101111111133788888888888
Q ss_pred HHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccCCC
Q 007111 567 DDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAPT 610 (617)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (617)
.+.|+.|-.--..|++-++|-=.-|-++....+|+|.++++-..
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888889999888876543
|
|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
Probab=87.46 E-value=3.1 Score=48.77 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhh
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEK 501 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 501 (617)
+.-|+|+++..+....||.||.+-...|-++|.
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 355666777777777777777766655544433
|
; GO: 0016021 integral to membrane |
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.46 E-value=3 Score=52.12 Aligned_cols=9 Identities=22% Similarity=0.136 Sum_probs=3.3
Q ss_pred cchhhhccc
Q 007111 578 GVLAGERAR 586 (617)
Q Consensus 578 ~~~~~~~~~ 586 (617)
+-|..++.|
T Consensus 814 ~~~~~~~~~ 822 (1163)
T COG1196 814 RELESLEQR 822 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
|
|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.15 E-value=4.5 Score=49.88 Aligned_cols=107 Identities=24% Similarity=0.266 Sum_probs=71.4
Q ss_pred HHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 007111 473 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVL-------------KSRQEMEKKLADSLKEMELLKEKLAGL----- 534 (617)
Q Consensus 473 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~lkek~~~~----- 534 (617)
.++.....+.+.|++++++|-+..++|.+++...- .|-.++|.+|++...+.+...+-++.+
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777777666666555321 123559999999998888888888887
Q ss_pred ------HHhHHh----------hhc-ccccccCC-------CcchhhhHHHHHHHHHHHHHhhhhhccc
Q 007111 535 ------ELAQEE----------ANS-LSNIVHSD-------NVRLEHDVAFLKAVLDDTQKELHSTRGV 579 (617)
Q Consensus 535 ------e~~qe~----------~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (617)
|+||.. .++ |.|...++ ...|+.|.+.|++-.+-.|+||-+.--.
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l 221 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL 221 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 555533 222 44433222 3345789999999999999999765433
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=52 Score=36.18 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=96.2
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEE
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
.++...++..|++|-. ..++.=.-.-.+|+.++....+|... +....+ ++.++++|.. ..+++
T Consensus 140 ~~v~f~~~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~~--~~i~~~~~~~~~ivg~~-------G~v~~ 203 (398)
T PLN00033 140 NSISFKGKEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGEP--VLIKATGPKSAEMVTDE-------GAIYV 203 (398)
T ss_pred eeeEEECCEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCCc--eEEEEECCCceEEEecc-------ceEEE
Confidence 4455567788888632 12343333457899887432333332 233334 3567777632 22555
Q ss_pred EECCCCcEEEeecC-CCCCCCC--------------cccEEEEECCcEEEEEccCCCCCCCCeEEEE-ECCCCcEEEeec
Q 007111 129 FDLKSLTWLPLHCT-GTGPSPR--------------SNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKI 192 (617)
Q Consensus 129 yD~~t~~W~~l~~~-g~~P~~R--------------~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~y-D~~t~~W~~~~~ 192 (617)
-+-...+|+.+... .+.|..+ ...++....+..++++|-.. .+++- |.....|+.+..
T Consensus 204 S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~ 277 (398)
T PLN00033 204 TSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNR 277 (398)
T ss_pred ECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecC
Confidence 55455689976210 0001110 11122222333255665433 24443 333334898865
Q ss_pred CCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcE-----EEeecCCCCCCCCCcceEEEEEeecCCcE
Q 007111 193 RGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEW-----SVAITSPSSSVTSNKGFTLVLVQHKEKDF 266 (617)
Q Consensus 193 ~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W-----~~l~~~~~~~p~~r~~~s~v~v~~~~~~~ 266 (617)
|.++...++... ++.++++|... .++.-+.....| ..+.. +..+.....+.. .+++.
T Consensus 278 ----~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~-----~~~~~~l~~v~~--~~d~~ 340 (398)
T PLN00033 278 ----ASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADI-----KSRGFGILDVGY--RSKKE 340 (398)
T ss_pred ----CCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeeccc-----CCCCcceEEEEE--cCCCc
Confidence 334444444433 77888887532 244444444444 44321 112233333333 24577
Q ss_pred EEEEcCCCCCCCCeEEEEECCCCccccc
Q 007111 267 LVAFGGIKKEPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 267 L~I~GG~~~~~~~dV~vyd~~~~~W~~~ 294 (617)
++++|... -+.+-......|.+.
T Consensus 341 ~~a~G~~G-----~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 341 AWAAGGSG-----ILLRSTDGGKSWKRD 363 (398)
T ss_pred EEEEECCC-----cEEEeCCCCcceeEc
Confidence 88888763 344444445566553
|
|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
Probab=87.11 E-value=3.2 Score=41.11 Aligned_cols=110 Identities=25% Similarity=0.289 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHH----------HHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ----------EMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
..-++.++.+..+|..|..=|..|....+...+.|...-++++ .++++|.+..-|.|.|+.++..++...
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888888888888888888777665444443 345666667777888999999888877
Q ss_pred Hhhhccc-ccc-------cCCCcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 539 EEANSLS-NIV-------HSDNVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 539 e~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
+|.-.-. ..| ---|+-||..|+-|...|+..+.+|++.-.
T Consensus 124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6654321 122 235788999999999999999999997643
|
|
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
Probab=86.64 E-value=6.5 Score=38.74 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh---------------hhhHHHHHHHHHHHHHHHHHHHH
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---------------LKSRQEMEKKLADSLKEMELLKE 529 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~lke 529 (617)
++|.+-+..++..|-.+.-....+.-++-...-..+..+-.. |..|+++..+|.....+++.-.+
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ 139 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEK 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 567776666666655544444444433333332222222111 44566666677666666666666
Q ss_pred HHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 530 KLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 530 k~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
|+..+|.- +-..|-..-+++++-+.=..++|.|+-+ ||.||++|.++|..-|
T Consensus 140 ki~~Lek~----------leL~~k~~~rql~~e~kK~~~~~~~~~~--------------l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 140 KIQELEKQ----------LELENKSFRRQLASEKKKHKEAQEEVKS--------------LQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 66666643 2222333446666666666667666653 6788889988887644
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=86.30 E-value=39 Score=34.92 Aligned_cols=160 Identities=19% Similarity=0.113 Sum_probs=94.5
Q ss_pred eEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 50 HSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 50 hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
.++.. .++.+|.--|..+ .+.+..||+.+++-.... ++|..-.+-.++.++++||..- - ....+++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLT---W---k~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLT---W---KEGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEE---S---SSSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEE---e---cCCeEEE
Confidence 34445 5778888877643 357999999999876555 5788888999999999999983 1 2467899
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe-ecC-CCCCCCCcceEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIR-GFHPSPRAGCCGV 206 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~-~~~-g~~P~~R~~ha~v 206 (617)
||+.+.+ .+ +..+.+.-|-+.|..++. +|+.-|. +.++.+||.+.+=... ... ...|..+- --+=
T Consensus 115 yd~~tl~--~~---~~~~y~~EGWGLt~dg~~-Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE 181 (264)
T PF05096_consen 115 YDPNTLK--KI---GTFPYPGEGWGLTSDGKR-LIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELE 181 (264)
T ss_dssp EETTTTE--EE---EEEE-SSS--EEEECSSC-EEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---E-EEEE
T ss_pred Eccccce--EE---EEEecCCcceEEEcCCCE-EEEECCc------cceEEECCcccceEEEEEEEECCEECCCc-EeEE
Confidence 9998754 33 234444567788866665 8988885 4699999976543322 111 00111111 1122
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
.+++.||.= .=..+.+.+.|+.++.-...
T Consensus 182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EETTEEEEE-----ETTSSEEEEEETTT-BEEEE
T ss_pred EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEE
Confidence 235555542 11236789999999875554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=86.28 E-value=11 Score=35.19 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=28.6
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
+.-.+.-+...+++|+.++-....+.|..+.++.+=.+.+|..|..+...+..+|+++.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666655555555555444444444444444443333333333333
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis []. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=60 Score=35.76 Aligned_cols=140 Identities=9% Similarity=0.010 Sum_probs=70.8
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
.++|.+|..+.....+... ....... ...-++ .|++.....+ ...+|.++..+.....+...+ .+.
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~---~~~~~~~-~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-----~~~ 330 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQS---SGIDTEP-FFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-----SYN 330 (427)
T ss_pred ceEEEEECCCCCcEECCCC---CCCCcCe-EEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-----CCc
Confidence 5799999988776666421 1111111 122234 5554432222 247899998888887774221 122
Q ss_pred c-EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEE
Q 007111 152 H-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 230 (617)
Q Consensus 152 h-~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~y 230 (617)
. ....-++++|+......+ . ..++++|+.++....+.... .. ...+ ..-+++.+++....+. ...++.+
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g-~--~~I~v~d~~~g~~~~lt~~~---~~-~~p~-~spdg~~l~~~~~~~g--~~~l~~~ 400 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGG-A--FKLYVQDLATGQVTALTDTT---RD-ESPS-FAPNGRYILYATQQGG--RSVLAAV 400 (427)
T ss_pred CceEECCCCCEEEEEEccCC-c--EEEEEEECCCCCeEEccCCC---Cc-cCce-ECCCCCEEEEEEecCC--CEEEEEE
Confidence 2 222335664554433322 1 36999999988877664321 11 1111 1125554444433222 2457777
Q ss_pred ECCCC
Q 007111 231 DILKG 235 (617)
Q Consensus 231 Dl~~~ 235 (617)
+....
T Consensus 401 ~~~g~ 405 (427)
T PRK02889 401 SSDGR 405 (427)
T ss_pred ECCCC
Confidence 77543
|
|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=85.97 E-value=4.2 Score=43.72 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhh
Q 007111 465 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFS 504 (617)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 504 (617)
+++..+...+.+++=.+-+.|..|+++|.+.++.+|..+.
T Consensus 66 ~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 66 ADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777788888888888887777544
|
|
| >PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor [] | Back alignment and domain information |
|---|
Probab=85.85 E-value=2.4 Score=35.57 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=52.5
Q ss_pred HHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHH
Q 007111 489 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLD 567 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (617)
|++.-+.-+...+.+++.-..+.++|.|++.-+.||+.+|.||-.||.++...-. .-|.||+-||+-|+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~----------~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ----------QYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 4556666666666666666688999999999999999999999999999854322 23677777776554
|
; PDB: 3VP9_B 3VP8_B. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=85.83 E-value=7.8 Score=44.20 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=57.0
Q ss_pred HHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc-----cccccc
Q 007111 475 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS-----LSNIVH 549 (617)
Q Consensus 475 ~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~-----~~~~~~ 549 (617)
++.+-.+...|..+.......++..+.++..+-......+..|..+..+++.++.+++.++..-+-... +|.-.+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~ 294 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQI 294 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcC
Confidence 333333344444444444444444444444444455555566666666666677666666544433322 566666
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhccchh
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (617)
.+. +..++-|+.-+++.+++++.-...+.
T Consensus 295 ~~~---~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 295 SEG---PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred CCc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 66666666666666666666555555
|
|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=85.50 E-value=6.7 Score=44.37 Aligned_cols=135 Identities=24% Similarity=0.250 Sum_probs=69.8
Q ss_pred HHHHHHHHH---HHhchhhHhHHHHhhcHHHHhhhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH----
Q 007111 471 YESKMAALI---RKNGILEGQLAAALVNREAAEKNFS----SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE---- 539 (617)
Q Consensus 471 ~~~~~~~~~---~~~~~~~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe---- 539 (617)
.+..++.+- ++.+.+.+++-+..+.+|+-+..|. ..+--.++.+........|.+.|||.|.+++.--+
T Consensus 225 LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq 304 (546)
T PF07888_consen 225 LEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQ 304 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 4445666677777777776663322 22111111111122334455667766666532211
Q ss_pred -------hhhccccc---ccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchh-----hHHHHHHHHhhh
Q 007111 540 -------EANSLSNI---VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV-----EVFHLKQRLQSL 604 (617)
Q Consensus 540 -------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 604 (617)
|.-.+.|+ -++|.-+.=-++|-|+.-|.|...+|--.|+-++-||. ++|..+ +|..|+.+|+.+
T Consensus 305 ~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~-~l~~~~e~~k~~ie~L~~el~~~ 383 (546)
T PF07888_consen 305 EAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQ-ALQHSAEADKDEIEKLSRELQML 383 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHH
Confidence 11111111 11222111124677787788888888888888888888 655433 455677777776
Q ss_pred hc
Q 007111 605 EN 606 (617)
Q Consensus 605 ~~ 606 (617)
|.
T Consensus 384 e~ 385 (546)
T PF07888_consen 384 EE 385 (546)
T ss_pred HH
Confidence 64
|
This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region []. |
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.44 E-value=8.3 Score=42.20 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 526 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (617)
.+++|+.--++...|+.||...-+...+.+..|.-.=.+.+++++++++..+..+.
T Consensus 50 ~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 50 LEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 34455555555556666666665555555555555555555566666555444433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=71 Score=36.14 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=72.5
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+.+++.||.+ ..+.+||+.+..-...- . ..... -.++. ..++.+++.|+.++ .+.+||+.+.+
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~-~h~~~--V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVI-K-CHSDQ--ITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEE-c-CCCCc--eEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 4577777763 25888888876432111 0 11111 11222 22567777776544 48899998765
Q ss_pred EE-EeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCE
Q 007111 136 WL-PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK 211 (617)
Q Consensus 136 W~-~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~ 211 (617)
-. .+. +. ...+.. .++.. ++. .++.+|.+.. .-..+..||+.+.... +... ... ......+..+ ++.
T Consensus 202 ~v~tl~--~H-~~~~~~-~~~w~~~~~-~ivt~G~s~s-~Dr~VklWDlr~~~~p-~~~~-~~d-~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 202 IVSSVE--AH-ASAKSQ-RCLWAKRKD-LIITLGCSKS-QQRQIMLWDTRKMASP-YSTV-DLD-QSSALFIPFFDEDTN 272 (493)
T ss_pred EEEEEe--cC-CCCcce-EEEEcCCCC-eEEEEecCCC-CCCeEEEEeCCCCCCc-eeEe-ccC-CCCceEEEEEcCCCC
Confidence 22 221 11 111111 22222 334 4455554321 1246889998653311 1110 001 1111222223 455
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
++++||..+ ..+.+||+.+......
T Consensus 273 ~L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 273 LLYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred EEEEEEeCC----CeEEEEEeeCCceEEE
Confidence 666666322 2478888887765443
|
|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=85.05 E-value=2.1 Score=42.16 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 519 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (617)
-....+++.+-+.++.+.+||-++....++.++.++.--+....++..++.
T Consensus 77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~ 127 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQ 127 (194)
T ss_dssp -------------------------------------HHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 344567888889999999999988888888887655444443444433333
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B. |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=84.92 E-value=40 Score=32.85 Aligned_cols=155 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred EEECCEEEEEeecCCCCCccCeEEEEECCCCcE--EEeecC-CCCCCCCcccEEEEECC-cEEEEEccCCCCCCCCeEEE
Q 007111 104 VRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--LPLHCT-GTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 104 ~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W--~~l~~~-g~~P~~R~~h~a~~~~~-~~LyV~GG~~~~~~~n~v~~ 179 (617)
+...+.+|+|-| +.+|+|+...... ..+... +.+|.. .. ++..... ..+|+|=|. ..|+
T Consensus 13 ~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg~-------~yw~ 75 (194)
T cd00094 13 TTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKGD-------KYWV 75 (194)
T ss_pred EEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECCC-------EEEE
Confidence 344588999854 2467776542111 111100 112321 22 3333332 348998664 4888
Q ss_pred EECCCCcEEEeec---CCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEe-ec-CCCCCCCCCc
Q 007111 180 LDFETMIWTRIKI---RGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA-IT-SPSSSVTSNK 252 (617)
Q Consensus 180 yD~~t~~W~~~~~---~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l-~~-~~~~~p~~r~ 252 (617)
|+..+..+.-... .+.++.+..--++... ++++|+|.| +..|+||....+...- +. .....+.-..
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 8876432221111 1111111111233333 689999988 4588998765543210 00 0000000001
Q ss_pred ceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 253 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 253 ~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
...++... . ++.+|+|-|. .+|+||..+.+
T Consensus 149 ~idaa~~~-~-~~~~yfF~g~------~y~~~d~~~~~ 178 (194)
T cd00094 149 KVDAAFRW-L-DGYYYFFKGD------QYWRFDPRSKE 178 (194)
T ss_pred CcceeEEe-C-CCcEEEEECC------EEEEEeCccce
Confidence 12222222 2 2678888875 78999987764
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=84.91 E-value=4.2 Score=41.29 Aligned_cols=106 Identities=32% Similarity=0.302 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhh-------hhhh---hhhHHHHHHHHHHH----HHHHHHHHHHHhhhHH
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKN-------FSSV---LKSRQEMEKKLADS----LKEMELLKEKLAGLEL 536 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~----~~~~~~lkek~~~~e~ 536 (617)
-+.+....-++...+++.|+.|-.-.+.+|.. |..+ +++-+..+.+.... ...+..|+++|..+|.
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666666666665555555543 3333 33333333333332 2234447777777766
Q ss_pred hHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 537 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 537 ~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
--|.+-.-++..-...=+||.++...|.-...+++||++|
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6565555444444455566666666666666666666654
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B .... |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=84.86 E-value=3.9 Score=50.64 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=4.0
Q ss_pred chhhHhHHHHh
Q 007111 483 GILEGQLAAAL 493 (617)
Q Consensus 483 ~~~~~q~~~~~ 493 (617)
..++.++..+.
T Consensus 701 ~~~~~~l~~l~ 711 (1179)
T TIGR02168 701 AELRKELEELE 711 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=84.59 E-value=69 Score=35.27 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=72.0
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEee-cCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG-EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG-~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|.+|+.+..-+.+. ..+.. .......-++..++++. .++. .++|.+|+.+....++.. + . ....
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g~-~~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~-~--~-~~~~ 295 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRGH-NGAPAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTS-G--A-GNNT 295 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCCc-cCceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeecc-C--C-CCcC
Confidence 46999999887766554 22221 11112222444444433 3322 368999998888777631 1 1 1111
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEE
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.....-+++.|++....++. ..+|.++..+..-..+.. .. ...+....++.|++.++ +.++.+|
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~---~~I~~~~~~~~~~~~l~~-----~~-~~~~~SpDG~~ia~~~~-------~~i~~~D 359 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGS---PQVYRMSASGGGASLVGG-----RG-YSAQISADGKTLVMING-------DNVVKQD 359 (429)
T ss_pred CEEECCCCCEEEEEECCCCC---ceEEEEECCCCCeEEecC-----CC-CCccCCCCCCEEEEEcC-------CCEEEEE
Confidence 22223355545544333322 468888876654433311 11 11111112445555543 3478899
Q ss_pred CCCCcEEEee
Q 007111 232 ILKGEWSVAI 241 (617)
Q Consensus 232 l~~~~W~~l~ 241 (617)
+.+..+..+.
T Consensus 360 l~~g~~~~lt 369 (429)
T PRK01742 360 LTSGSTEVLS 369 (429)
T ss_pred CCCCCeEEec
Confidence 9988887654
|
|
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=84.44 E-value=6.1 Score=46.49 Aligned_cols=30 Identities=33% Similarity=0.162 Sum_probs=18.3
Q ss_pred HhhhhhccchhhhccccccchhhHHHHHHH
Q 007111 571 KELHSTRGVLAGERARAFQLQVEVFHLKQR 600 (617)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (617)
|-|.++|.-|+.=-.+.=+||.++.|+.|+
T Consensus 494 ~~le~l~~El~~l~~e~~~lq~~~~~~~qs 523 (980)
T KOG0980|consen 494 KALESLRQELALLLIELEELQRTLSNLAQS 523 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334455555666666666777777766553
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.39 E-value=10 Score=44.09 Aligned_cols=121 Identities=31% Similarity=0.291 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhchhhHhHHH-----HhhcHHHHhhhhhhhhhhHHHHHHHHHH-------HHHHHHH-----HHHHH
Q 007111 469 QFYESKMAALIRKNGILEGQLAA-----ALVNREAAEKNFSSVLKSRQEMEKKLAD-------SLKEMEL-----LKEKL 531 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-----lkek~ 531 (617)
.-|++=++.|=||--+|+.|--. +...+|++||+ -+-|||-|+|-.. ..||+|. -|..+
T Consensus 320 eNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekk----ererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 320 ENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKK----ERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred HhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788887777777765433 34455555555 4667766665442 2223322 33345
Q ss_pred hhhHHhHHhhhcccccccCCCcchhhhHHHHH---HHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhccC
Q 007111 532 AGLELAQEEANSLSNIVHSDNVRLEHDVAFLK---AVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 608 (617)
Q Consensus 532 ~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (617)
...|.|.+|...- -+||-|-|-.+ +-...-|+ -+.-+-+|-=|||+|+--|..++|.|++|-
T Consensus 396 e~rEaar~ElEkq--------RqlewErar~qem~~Qk~reqe-------~iv~~nak~~ql~~eletLn~k~qqls~kl 460 (1118)
T KOG1029|consen 396 ERREAAREELEKQ--------RQLEWERARRQEMLNQKNREQE-------WIVYLNAKKKQLQQELETLNFKLQQLSGKL 460 (1118)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6666666664321 13343333222 22222232 233477888899999999999999998874
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=83.89 E-value=13 Score=33.65 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.0
Q ss_pred EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEE-ECC
Q 007111 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF-DLK 132 (617)
Q Consensus 54 ~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~y-D~~ 132 (617)
.++|-+|-.+-. .......+..||..+.+|+.++.+...........++.++|+|-++.-........-++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 356777765543 22345689999999999999874211234556667778889888876544332224578888 455
Q ss_pred CCcEEEee
Q 007111 133 SLTWLPLH 140 (617)
Q Consensus 133 t~~W~~l~ 140 (617)
...|.+..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 67899774
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
Probab=83.29 E-value=4.7 Score=45.54 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhc
Q 007111 512 EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 584 (617)
Q Consensus 512 ~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (617)
.||..+.++.+|..-|.+-|+.+...-++.-.|-+=-+.-.-.|.+|++|++-+.+. |++.+|-..+.+.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~---eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQ---EIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHH---HHHHHHHHHhhcc
Confidence 333444444444444444444443222222222222222233455666666655543 4444444444433
|
|
| >KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.23 E-value=7 Score=42.12 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHhchhhHhHHHHhhcHHH--HhhhhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHhhhHHh
Q 007111 466 SIYQFYESKMAALIRKNGILEGQLAAALVNREA--AEKNFSSVLKSRQEMEKKLAD----SLKEMELLKEKLAGLELA 537 (617)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lkek~~~~e~~ 537 (617)
+|-+-|+-+.+++-+.-+.+|..+.++...+.. -+.+|.--.+-+++.++||-. ..||++.||.|++.+|.-
T Consensus 100 q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~ 177 (542)
T KOG0993|consen 100 QMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQR 177 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Confidence 555678888888888888999999999888777 566777778889999999987 467888899999988743
|
|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
Probab=82.88 E-value=8.5 Score=41.01 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhhhccchhh
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAG 582 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~ 582 (617)
++-||+-|.+.+.++..-|.-|+-
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.79 E-value=65 Score=33.61 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 174 LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 174 ~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
...+++||+.+..|.+....+. .+|....-+-..+.+++.-- ..+.+.+||+.+.+.+.++
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs--~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGS--KARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CceeeEeCcccccceeeeCCCC--CCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec
Confidence 3469999999999999876432 23433222323566776422 2245889999999999886
|
|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=82.73 E-value=4.1 Score=51.81 Aligned_cols=141 Identities=23% Similarity=0.301 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHH-----HHHHHH----------HHHHHHH
Q 007111 467 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA-----DSLKEM----------ELLKEKL 531 (617)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----------~~lkek~ 531 (617)
..+.|+.+++.+-..-..++.+|..+-+.+++.++.++++..-..+.+..-| ++++.+ .-|+.++
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRL 522 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Confidence 3578999999999999999999999999999999988887665544443333 333333 3478888
Q ss_pred hhhHH---hHHhhhccccc---ccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 532 AGLEL---AQEEANSLSNI---VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 532 ~~~e~---~qe~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
+.+|. -|-.++.|-.- .+.-++ .+..+|.+.+++.+.+|-+--..++.-+.|.-.+|=+...|+++++.++
T Consensus 523 ~~l~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~ 599 (1486)
T PRK04863 523 SELEQRLRQQQRAERLLAEFCKRLGKNL---DDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 44443332211 122111 3455666777777777766667777778888888899999999999999
Q ss_pred ccCCC
Q 007111 606 NRAPT 610 (617)
Q Consensus 606 ~~~~~ 610 (617)
.++|.
T Consensus 600 ~~ap~ 604 (1486)
T PRK04863 600 ARAPA 604 (1486)
T ss_pred HhChH
Confidence 99884
|
|
| >PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8 | Back alignment and domain information |
|---|
Probab=82.59 E-value=5.7 Score=38.86 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhh
Q 007111 480 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQE-MEKKLADSLKEMELLKEKLAG 533 (617)
Q Consensus 480 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lkek~~~ 533 (617)
.+.-.+-.++...-+..+++.|...+..+..++ .+.+.+...+|++.||++|+.
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333333334443333344444433333333322 223333344455555554444
|
Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane |
| >PRK10929 putative mechanosensitive channel protein; Provisional | Back alignment and domain information |
|---|
Probab=82.13 E-value=8.3 Score=47.56 Aligned_cols=109 Identities=11% Similarity=0.081 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh---------hhhhHHHHHHHHHHHHHHHHHHHHHHhhh------
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------VLKSRQEMEKKLADSLKEMELLKEKLAGL------ 534 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~lkek~~~~------ 534 (617)
.+-.+++..-.+...+++++++|-+.++++.+++.. .--|..++|.++..+.-+...+++.++..
T Consensus 55 ~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~ 134 (1109)
T PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRARE 134 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334566667777778888888887777777776552 12346888888888777777777776643
Q ss_pred ------------HHhHH---hhhc-ccccccC-C------CcchhhhHHHHHHHHHHHHHhhhhhcc
Q 007111 535 ------------ELAQE---EANS-LSNIVHS-D------NVRLEHDVAFLKAVLDDTQKELHSTRG 578 (617)
Q Consensus 535 ------------e~~qe---~~~~-~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (617)
-.|+. |.++ |.+-... + ...|+.|.+.+++-++..+.||-|.--
T Consensus 135 ~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~ 201 (1109)
T PRK10929 135 ISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANN 201 (1109)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 22222 2222 3231111 1 334567899999999999999986433
|
|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=82.08 E-value=6 Score=47.75 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=26.9
Q ss_pred ccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccc
Q 007111 546 NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAF 588 (617)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (617)
+++..+|.-|-.|+.|||+-|.+... - +-.+...|+-||+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 268 (977)
T PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAE-T--EERVFKLEKERSL 268 (977)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHh-h--hHHHHHHHHHHHH
Confidence 45667899999999999998876543 1 2234444555553
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=81.94 E-value=65 Score=33.04 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=81.0
Q ss_pred CCEEEEEeecCCCCCccCeEEEEEC-----CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEE
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDL-----KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~-----~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD 181 (617)
++++|++.|..++ .++.|.- ..+.+.... .+|.+-.|.+.+++++...|--.+ .+.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~~------s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKYN------SRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEecC------CceEEEEE
Confidence 3467777776543 3444422 122222221 466667777888888883333332 36799999
Q ss_pred CCCCcEE-Eeec--CCCC---CCCCcc---eEEEEECCEEEEEecCCCCCccceEEEEECCC----CcEEEeecCCCCCC
Q 007111 182 FETMIWT-RIKI--RGFH---PSPRAG---CCGVLCGTKWYIAGGGSRKKRHAETLIFDILK----GEWSVAITSPSSSV 248 (617)
Q Consensus 182 ~~t~~W~-~~~~--~g~~---P~~R~~---ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~----~~W~~l~~~~~~~p 248 (617)
+.+..-. .... .+.. |-...+ .-.++..+.++++=........--+-.+|+.+ .+|..- .+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~------~~ 169 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS------YP 169 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec------cC
Confidence 9988766 3222 1111 111111 22333444555553332221112234555554 346542 12
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....+.+-++ ++.||++...+.....-.+.||..+++
T Consensus 170 k~~~~naFmv-----CGvLY~~~s~~~~~~~I~yafDt~t~~ 206 (250)
T PF02191_consen 170 KRSAGNAFMV-----CGVLYATDSYDTRDTEIFYAFDTYTGK 206 (250)
T ss_pred chhhcceeeE-----eeEEEEEEECCCCCcEEEEEEECCCCc
Confidence 2222332222 367888887765445567889998776
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=81.88 E-value=3 Score=44.25 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=52.2
Q ss_pred HHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHH
Q 007111 489 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 568 (617)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (617)
.++.....++.|+.....++--+++|+..+++.+|++.|+++.+.++..+++.-..-|..+.+-.+++.+..-|++-++-
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~ 124 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEY 124 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445556666777777777777777777777776555554444454454445555566666666666
Q ss_pred HHHhhhhhc
Q 007111 569 TQKELHSTR 577 (617)
Q Consensus 569 ~~~~~~~~~ 577 (617)
++.+|..-|
T Consensus 125 ~~~~L~~L~ 133 (314)
T PF04111_consen 125 ASNQLDRLR 133 (314)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHHHH
Confidence 666665544
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A. |
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
Probab=81.84 E-value=5.3 Score=46.91 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=25.4
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhH-------HHHHHHHHHHHH
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSR-------QEMEKKLADSLK 522 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 522 (617)
..|..+|......-|+.+.++..+.++| +.||+||++-.+
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777777777665555 356677776444
|
; GO: 0016021 integral to membrane |
| >KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.68 E-value=5.8 Score=35.02 Aligned_cols=78 Identities=35% Similarity=0.558 Sum_probs=56.8
Q ss_pred HHhhhhhhhhhhHHHHHHHHHH---HHHHHHHHHH-----HHhhhHHh---HHhhhcccccccCCCcchh---hhHHHHH
Q 007111 498 AAEKNFSSVLKSRQEMEKKLAD---SLKEMELLKE-----KLAGLELA---QEEANSLSNIVHSDNVRLE---HDVAFLK 563 (617)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~lke-----k~~~~e~~---qe~~~~~~~~~~~~~~~~~---~~~~~~~ 563 (617)
+.+|.++.-+.+||+||-.|.+ .+.|..+|.+ ||-|-=|. +|||+. |+ ..||| .|++-+.
T Consensus 16 ~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~--nV----~kRlefI~~Eikr~e 89 (120)
T KOG3478|consen 16 NLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEART--NV----GKRLEFISKEIKRLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHh--hH----HHHHHHHHHHHHHHH
Confidence 3466777779999999999986 6677777765 55553332 345442 22 35777 7888889
Q ss_pred HHHHHHHHhhhhhccchh
Q 007111 564 AVLDDTQKELHSTRGVLA 581 (617)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~ 581 (617)
+-+.|.|+|+---|+-++
T Consensus 90 ~~i~d~q~e~~k~R~~v~ 107 (120)
T KOG3478|consen 90 NQIRDSQEEFEKQREAVI 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=81.65 E-value=73 Score=33.41 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=78.0
Q ss_pred CEEEEEcccCC-CCC--Cc-eEEEEEECCCC-----cEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEE
Q 007111 57 KKVLLVGGKTD-SGS--DR-VSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 57 ~~lyV~GG~~~-~~~--~~-~~v~~yd~~t~-----~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
..++++|.... +.. .. ..++.|+.... +++.+. ..+..-.-++++.++++|++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 46777774321 111 22 67999998884 566654 22333345677778888665543 5688
Q ss_pred EEECCCCc-EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 128 MFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 128 ~yD~~t~~-W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
+|+..... |.+.. .+..+-+-.++.++++. | ++|-.-.+ -.++.|+....+-..+... +.++...++.
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~-I-~vgD~~~s---v~~~~~~~~~~~l~~va~d---~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNY-I-LVGDAMKS---VSLLRYDEENNKLILVARD---YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTE-E-EEEESSSS---EEEEEEETTTE-EEEEEEE---SS-BEEEEEE
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccE-E-EEEEcccC---EEEEEEEccCCEEEEEEec---CCCccEEEEE
Confidence 88888887 88773 33333344455555553 4 45543221 1355678766667766654 5577766666
Q ss_pred EE-CCEEEEEec
Q 007111 207 LC-GTKWYIAGG 217 (617)
Q Consensus 207 ~~-~~~IyI~GG 217 (617)
.+ ++. .++++
T Consensus 180 ~l~d~~-~~i~~ 190 (321)
T PF03178_consen 180 FLVDED-TIIVG 190 (321)
T ss_dssp EE-SSS-EEEEE
T ss_pred EecCCc-EEEEE
Confidence 66 555 44444
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=81.62 E-value=75 Score=33.57 Aligned_cols=201 Identities=15% Similarity=0.227 Sum_probs=87.2
Q ss_pred CCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce
Q 007111 22 DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 100 (617)
Q Consensus 22 ~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~ 100 (617)
...+|..+... .+.|.. .+.+..+ ++.++++|.. ..+|+=.-.-.+|+.+.. +..-.-
T Consensus 89 gG~tW~~v~l~---------~~lpgs-~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~ 147 (302)
T PF14870_consen 89 GGKTWERVPLS---------SKLPGS-PFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSI 147 (302)
T ss_dssp TTSS-EE-------------TT-SS--EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----E
T ss_pred CCCCcEEeecC---------CCCCCC-eeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCccee
Confidence 35568887631 123332 2444444 5677777643 247776666778998862 222222
Q ss_pred eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEE
Q 007111 101 HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 101 ~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~ 179 (617)
..+... ++.+++++.+ ++ -+-..|+-...|.... .+..|.-..+....+..+++.. ..+. +..
T Consensus 148 ~~~~r~~dG~~vavs~~-G~-----~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~-----~~~ 211 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR-GN-----FYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQ-----IQF 211 (302)
T ss_dssp EEEEE-TTS-EEEEETT-SS-----EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTE-----EEE
T ss_pred EeEEECCCCcEEEEECc-cc-----EEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCcE-----EEE
Confidence 223333 4565555532 22 1235678778899884 5556666666666665476654 4332 333
Q ss_pred EE--CCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceE
Q 007111 180 LD--FETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 255 (617)
Q Consensus 180 yD--~~t~~W~~~~~~g~~P~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s 255 (617)
=+ -....|.+.... .....++ ..++.. ++.+|+.||.. .+++-.-.-.+|....... +.+-..+.
T Consensus 212 s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~~---~~~~n~~~ 280 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVGE---NVPSNLYR 280 (302)
T ss_dssp EE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGT---TSSS---E
T ss_pred ccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEeCCc------cEEEeCCCCccceECcccc---CCCCceEE
Confidence 34 245677764331 1122332 233444 67899998853 2444434556899975321 11222333
Q ss_pred EEEEeecCCcEEEEEcCC
Q 007111 256 LVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 256 ~v~v~~~~~~~L~I~GG~ 273 (617)
.+.+. .++-||+|..
T Consensus 281 i~f~~---~~~gf~lG~~ 295 (302)
T PF14870_consen 281 IVFVN---PDKGFVLGQD 295 (302)
T ss_dssp EEEEE---TTEEEEE-ST
T ss_pred EEEcC---CCceEEECCC
Confidence 33333 3567888864
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.22 E-value=6.5 Score=50.81 Aligned_cols=133 Identities=23% Similarity=0.247 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
|..+.|..+|.+.+..||+||++-...+|+=.+....+-+.+.+++..|.+....++.++.+...++... -+...-+
T Consensus 1002 ~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l---~kke~El 1078 (1930)
T KOG0161|consen 1002 QAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQL---KKKESEL 1078 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444555555555555555555554444444433333333333333333333333333333333222110 0111112
Q ss_pred cCCCcchh----------hhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhh
Q 007111 549 HSDNVRLE----------HDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 549 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
+.-+.++| ..|.-|-+-++|++.+|-..|--.+-....---|+.++..|+.+|.--
T Consensus 1079 ~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1079 SQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 224455555666666777777666654333346778888888887654
|
|
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=81.20 E-value=2.6 Score=41.40 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=43.6
Q ss_pred HHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcch
Q 007111 476 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 555 (617)
Q Consensus 476 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~ 555 (617)
+.+-.+-..|...|+.+...+.+..-.|..+...-+++++++....+.+..|+..++.++.. ...|
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~--------------~~~l 135 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEK--------------IKDL 135 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 33444556677788888999999999988888888888888888888888888887777644 2347
Q ss_pred hhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 556 EHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
+.+++-....++..+.|+-+ ||+++-++-+++..||
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~--------------L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQA--------------LQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 78899999999999999865 5566677777776665
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B. |
| >PRK13169 DNA replication intiation control protein YabA; Reviewed | Back alignment and domain information |
|---|
Probab=81.20 E-value=4.2 Score=36.30 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=43.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 504 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
..++..-.+||..+....++++.||..++.+.. +|.+|.-|.+-|+..|++.+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~E--------------EN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLE--------------ENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhc
Confidence 456777889999999999999999999988763 478888888888888887533
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=81.08 E-value=84 Score=33.74 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=73.2
Q ss_pred eEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeec
Q 007111 15 DVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEA 90 (617)
Q Consensus 15 ~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~ 90 (617)
.++.+|+.+.+ |...... .....+......+++||+ |.+.. .+++||..+. .|..-..
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~-----------~~~~~~~~~~~~~G~i~~-g~~~g------~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG-----------AVAQLSGPILGSDGKIYV-GSWDG------KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred cEEEEeCCCCcEEecccCcC-----------cceeccCceEEeCCeEEE-ecccc------eEEEEECCCCcEEEEEecC
Confidence 68999998887 8655431 000111112222677664 43322 7999999654 5877653
Q ss_pred cCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccC
Q 007111 91 KGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~ 168 (617)
. . .+.....+..++.+|+.- ..+.++++|..+.+ |..-...+ .+...++... +.+. ++++|..
T Consensus 141 ~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~--~~~~-~vy~~~~ 205 (370)
T COG1520 141 G---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA--IASG-TVYVGSD 205 (370)
T ss_pred C---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cccccccCce--eecc-eEEEecC
Confidence 2 1 333333444455666542 13568899988664 88542111 2222222222 4444 3344433
Q ss_pred CCCCCCCeEEEEECCCC--cEEEe
Q 007111 169 SKSKTLNDLYSLDFETM--IWTRI 190 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~--~W~~~ 190 (617)
+ .-..++.+|+.++ .|..-
T Consensus 206 ~---~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 206 G---YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred C---CcceEEEEEccCCcEeeeee
Confidence 2 1226899999654 57753
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=80.89 E-value=1.3e+02 Score=35.67 Aligned_cols=210 Identities=8% Similarity=-0.008 Sum_probs=100.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEEC-
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL- 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~- 131 (617)
+++-+++............+|++++.+. .=..+-.. +........... +++..++...... .+.++.|+.
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~~---~~~~~l~~~~ 255 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASAT---TSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECCc---cccEEEEECc
Confidence 4444444443222124468999999988 32333311 122222233333 4444445444332 467888884
Q ss_pred -CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEEC
Q 007111 132 -KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLCG 209 (617)
Q Consensus 132 -~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~-t~~W~~~~~~g~~P~~R~~ha~v~~~ 209 (617)
.+..|..+. +.+.. ..+.....++. +|+.--.+ .....+...++. +..|+.+... ...+.--.+...+
T Consensus 256 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~-ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~ 325 (686)
T PRK10115 256 LADAEPFVFL---PRRKD-HEYSLDHYQHR-FYLRSNRH--GKNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFT 325 (686)
T ss_pred CCCCCceEEE---ECCCC-CEEEEEeCCCE-EEEEEcCC--CCCceEEEecCCCcccCeEEECC---CCCCEEEEEEEEC
Confidence 334444332 11211 11222233444 77775432 223347777876 6789887653 1122222344457
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEee--cCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~--~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
+.+++..-..+ ...++++|+.+.....+.. +.+.. .+.+.... .++..++.+.+.. ....++.||+.
T Consensus 326 ~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~~-----~~~~~-~~~~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~ 394 (686)
T PRK10115 326 DWLVVEERQRG---LTSLRQINRKTREVIGIAF-----DDPAY-VTWIAYNPEPETSRLRYGYSSMT--TPDTLFELDMD 394 (686)
T ss_pred CEEEEEEEeCC---EEEEEEEcCCCCceEEecC-----CCCce-EeeecccCCCCCceEEEEEecCC--CCCEEEEEECC
Confidence 77777654322 2457888876555554421 01111 11111111 1122333333332 35688999988
Q ss_pred CCccc
Q 007111 288 KNESS 292 (617)
Q Consensus 288 ~~~W~ 292 (617)
+.+|.
T Consensus 395 ~~~~~ 399 (686)
T PRK10115 395 TGERR 399 (686)
T ss_pred CCcEE
Confidence 77653
|
|
| >PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=80.67 E-value=2.7 Score=36.53 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHHHH
Q 007111 511 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 566 (617)
Q Consensus 511 ~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (617)
-+|...|.-+..|.++|+.|++.+| .+|-+|+++++-+|.-.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele--------------~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELE--------------DENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhc
Confidence 4677888889999999999999987 45778888988888754
|
|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.31 E-value=11 Score=45.17 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=73.4
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHH
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFL 562 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~ 562 (617)
-+||.||+.+...-...+-.+...-.+.+..++|+..+.+.++.++++|++-|.+-++ +-.++--+-....-+
T Consensus 297 ~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~-------~~~~~~~~ke~~~~~ 369 (1174)
T KOG0933|consen 297 KALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAK-------VEEGYEKLKEAFQED 369 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHH
Confidence 5789999999888888888888888999999999999999999999999888877655 333444444455566
Q ss_pred HHHHHHHHHhhhh-hccchhhhc
Q 007111 563 KAVLDDTQKELHS-TRGVLAGER 584 (617)
Q Consensus 563 ~~~~~~~~~~~~~-~~~~~~~~~ 584 (617)
-+.+++-|+++.| |+|.-++|-
T Consensus 370 s~~~e~~e~~~eslt~G~Ss~~~ 392 (1174)
T KOG0933|consen 370 SKLLEKAEELVESLTAGLSSNED 392 (1174)
T ss_pred HHHHHHHHHHHHHHhcccccCcc
Confidence 6778888887776 455555554
|
|
| >PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold) | Back alignment and domain information |
|---|
Probab=80.29 E-value=13 Score=32.93 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 536 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~ 536 (617)
...++..+-.|+..+..|+..+....+..+...+ -.-+++++++++.+.++. ||+|-+++
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~q-------r~~eLqaki~ea~~~le~--eK~ak~~l 84 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQ-------RIAELQAKIDEARRNLED--EKQAKLEL 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 4567777777888887776666666555555544 456788999999998887 77777543
|
The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=80.27 E-value=98 Score=34.04 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=45.3
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcE-----EEeecCCCCCCCCcc-eEEEEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-----TRIKIRGFHPSPRAG-CCGVLC 208 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W-----~~~~~~g~~P~~R~~-ha~v~~ 208 (617)
.|+.+. .|.++.-.++....+..++++|.... ++.-+-....| ..+.. +..+.. .++...
T Consensus 271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G~------l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGGG------LYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYR 336 (398)
T ss_pred ceEEec----CCCccceeeeeEcCCCCEEEEeCCce------EEEecCCCCcccccceeeccc----CCCCcceEEEEEc
Confidence 489884 44455444444444333888775432 43333333444 44322 222332 333333
Q ss_pred -CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
++.+|++|... -+++-.....+|+...
T Consensus 337 ~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 337 SKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 66888888642 2444445567899975
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=80.26 E-value=98 Score=34.04 Aligned_cols=97 Identities=7% Similarity=0.058 Sum_probs=51.3
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 151 (617)
..+|.+|+.+.....+.. .... ........++ .|++.....+. ..+|.++..+..-..+. . .. +
T Consensus 272 ~~Iy~~d~~~~~~~~lt~---~~~~-~~~~~wSpDG~~i~f~s~~~g~----~~I~~~~~~~~~~~~l~---~--~~-~- 336 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTS---GAGN-NTEPSWSPDGQSILFTSDRSGS----PQVYRMSASGGGASLVG---G--RG-Y- 336 (429)
T ss_pred EEEEEEECCCCCeEeecc---CCCC-cCCEEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEEec---C--CC-C-
Confidence 369999998887766642 1111 1111112244 45544333322 46888887665443331 1 11 1
Q ss_pred cEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEee
Q 007111 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 152 h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~ 191 (617)
.....-+++.|++.++ +.++.+|+.++.+..+.
T Consensus 337 ~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 337 SAQISADGKTLVMING-------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEec
Confidence 1222235564555543 35888999999887654
|
|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.25 E-value=11 Score=45.71 Aligned_cols=73 Identities=27% Similarity=0.376 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHh
Q 007111 468 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540 (617)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~ 540 (617)
.|-.+.|+..+-.+-..|++.++-..+..+-+..++..+.+.-+++++...++.+|.+.|.|.+.+++.+-.|
T Consensus 902 ~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E 974 (1293)
T KOG0996|consen 902 VQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE 974 (1293)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4667788888888888888888888888888888888888888888888888888888888888888877666
|
|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=80.06 E-value=12 Score=35.03 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV----------LKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 539 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe 539 (617)
-.+.+|++|-.++..||.+|+.+...+..+..++... .+=.|.||..|..+.+-+....+||..++.+=|
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4556667777777777766666655555444443332 333444444444444444444555554443322
Q ss_pred hhhcccccccCCCcchhhhHHHHHHHHHHHHH
Q 007111 540 EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
+ +|+-|+.|..=.++..+
T Consensus 112 ~--------------~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 112 H--------------FERKVKALEQERDQWEE 129 (143)
T ss_pred H--------------HHHHHHHHHhhHHHHHH
Confidence 2 45666666665555444
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis []. |
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
Probab=80.05 E-value=15 Score=37.52 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=42.5
Q ss_pred hhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHHHHH
Q 007111 485 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 564 (617)
Q Consensus 485 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (617)
|+.+|-..-..-..|...|.-.......|+.|+..+..+.+.|..|...+|.+.+....-...--.+.-+|+.+++-+.+
T Consensus 10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~ 89 (246)
T PF00769_consen 10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444555666666666666666676666666666666555555556667778877776666
Q ss_pred HHHHHHH
Q 007111 565 VLDDTQK 571 (617)
Q Consensus 565 ~~~~~~~ 571 (617)
....+..
T Consensus 90 ~i~~l~e 96 (246)
T PF00769_consen 90 EIARLEE 96 (246)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
|
Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 617 | ||||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 5e-04 |
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 156 bits (394), Expect = 2e-40
Identities = 48/271 (17%), Positives = 89/271 (32%), Gaps = 25/271 (9%)
Query: 36 SPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE-AKGD 93
L + P R + G V +GG + + + + +E + +
Sbjct: 376 DYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSE 435
Query: 94 IPVARSGHT--VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 151
+PVAR HT + ++ L+L GG + L+D +FD+K+ W + R
Sbjct: 436 VPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM---IKSLSHTRFR 492
Query: 152 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 211
H A D N+LI GG ++ + + I+ + + G+
Sbjct: 493 HSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549
Query: 212 W---YIAGGGSRKKRHA--ETLIFDILKGEWS---VAITSPSSSVTSNKGFTLVLVQHKE 263
I GGG + + +IF + I + G + +
Sbjct: 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI---T 606
Query: 264 KDFLVAFGGIKK----EPSNQVEVLSIEKNE 290
L+ GG + +N + L
Sbjct: 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 7e-35
Identities = 45/237 (18%), Positives = 75/237 (31%), Gaps = 33/237 (13%)
Query: 1 MIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-K 58
++++GG L D + + W+ SL HS S
Sbjct: 454 LLLIGGRKAPHQGLSDNWIFDMKTREWS--------MIKSLS---HTRFRHSACSLPDGN 502
Query: 59 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV----RASSVLILFG 114
VL++GG T+ + + ++ E + V K + + + +IL G
Sbjct: 503 VLILGGVTEGPA----MLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558
Query: 115 GEDGKRRKLNDLHMFDLK----SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 170
G + + +F + + R + LLI GG+S
Sbjct: 559 GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSP 618
Query: 171 SKTL---NDLYSLDFETMIWTRIKI----RGFHPSPRAG-CCGVLCGTKWYIAGGGS 219
S N + SLD + T I I H AG +I GGG+
Sbjct: 619 SGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 8e-27
Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 23/252 (9%)
Query: 82 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW---LP 138
T + + P+ R V A + + GG + R +N++ +
Sbjct: 372 TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSIHYDKIDMKNI 429
Query: 139 LHCTGTGPSPRSNHVA-ALYDDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRIKIRGFH 196
+ P R H + + LL+ GG + + L+D + D +T W+ IK
Sbjct: 430 EVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--- 486
Query: 197 PSPRAGCCGVLCGTKW-YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 255
R I GG L++++ + + +T ++
Sbjct: 487 SHTRFRHSACSLPDGNVLILGG---VTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSA 542
Query: 256 LVLVQHKEKDFLVAFGGI--KKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRS 313
+ K ++ GG + S++ + + ++ + P +R
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF----QRY 598
Query: 314 SSTGLACQLGNG 325
S +
Sbjct: 599 GSQ--IKYITPR 608
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 47/248 (18%), Positives = 79/248 (31%), Gaps = 27/248 (10%)
Query: 3 VVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLL 61
++GG + + N + SW + P R + + K+
Sbjct: 60 ILGGSQLFPI-KRMDCYNVVKDSWYSKLG------------PPTPRDSLAACAAEGKIYT 106
Query: 62 VGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-- 119
GG S +DT TE W + R H +V A+ ++ + GG G
Sbjct: 107 SGGSEVGNSALYLFECYDTRTESWHTK---PSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163
Query: 120 -RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178
R LN ++D + TW L R NH DK + GG + L+++
Sbjct: 164 SGRVLNSCEVYDPATETWTEL---CPMIEARKNHGLVFVKDK-IFAVGGQNGLGGLDNVE 219
Query: 179 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238
D + W + P G+ Y+ G R L ++ +W
Sbjct: 220 YYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276
Query: 239 VAITSPSS 246
+
Sbjct: 277 ANSKVRAF 284
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 49/261 (18%), Positives = 80/261 (30%), Gaps = 39/261 (14%)
Query: 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILF 113
+ + G GS S F+ + W+ + R V +V+ +
Sbjct: 9 KKHDYRIALFG----GSQPQSCRYFNPKDYSWTDI---RCPFEKRRDAACVFWDNVVYIL 61
Query: 114 GGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 173
GG + + +++ +W P+PR + A + K + GGS +
Sbjct: 62 GGSQLFP--IKRMDCYNVVKDSWYSKLGP---PTPRDSLAACAAEGK-IYTSGGSEVGNS 115
Query: 174 -LNDLYSLDFETMIWTRIKIRGFHP--SPRAGCCGVLCGTKWYIAGGGSRKKRHAETL-- 228
L D T W + R V Y+ GG L
Sbjct: 116 ALYLFECYDTRTESWHTKP-----SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 229 --IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQVEVLS 285
++D W+ + + K LV V KD + A GG + VE
Sbjct: 171 CEVYDPATETWTEL----CPMIEARKNHGLVFV----KDKIFAVGGQNGLGGLDNVEYYD 222
Query: 286 IEKNE----SSMG-RRSTPNA 301
I+ NE S M + T
Sbjct: 223 IKLNEWKMVSPMPWKGVTVKC 243
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 3 VVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKVLL 61
VGG++G G LD+V+ + W S +P + G V +
Sbjct: 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSP------------MPWKGVTVKCAAVGSIVYV 252
Query: 62 VGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG 118
+ G G R+ + ++TET+ W + ++ V+ G +
Sbjct: 253 LAG--FQGVGRLGHILEYNTETDKWVAN---SKVRAFPVTSCLI---CVVDTCGANEE 302
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 29/249 (11%)
Query: 3 VVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLV 62
VGG +G+ + V + + WT+ + ++ + V
Sbjct: 66 AVGGFNGSLRVRTVDSYDPVKDQWTSVA----------NMRDRRST-LGAAVLNGLLYAV 114
Query: 63 GGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRK 122
GG S SV ++ ++ W V + RS V +L GG D R+
Sbjct: 115 GGFDGSTGLS-SVEAYNIKSNEWFHV---APMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170
Query: 123 -LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 181
L+ + ++ + W + + RS + ++ L GG + D
Sbjct: 171 CLSTVECYNATTNEWTYI---AEMSTRRSGAGVGVLNNL-LYAVGGHDGPLVRKSVEVYD 226
Query: 182 FETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238
T W ++ R Y+ GG A ++ +W+
Sbjct: 227 PTTNAWRQV------ADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280
Query: 239 VAITSPSSS 247
V + S+
Sbjct: 281 VVSSCMSTG 289
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-23
Identities = 51/297 (17%), Positives = 96/297 (32%), Gaps = 42/297 (14%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKV 59
++VV G + V+ +F W + +P+ R ++ V
Sbjct: 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAE------------LPSRRCRAGMVYMAGLV 64
Query: 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK 119
VGG + +V ++D + W+ V ++ RS + +L GG DG
Sbjct: 65 FAVGG-FNGSLRVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 120 RRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS--KTL 174
L+ + +++KS W P+ + RS+ + L GG + + L
Sbjct: 121 TG-LSSVEAYNIKSNEWFHVAPM------NTRRSSVGVGVVGGL-LYAVGGYDVASRQCL 172
Query: 175 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 234
+ + + T WT I + R+G + Y GG ++D
Sbjct: 173 STVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT 229
Query: 235 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQVEVLSIEKNE 290
W + + + V L GG VE + ++
Sbjct: 230 NAWRQV----ADMNMCRRNAGVCAVNGL----LYVVGGDDGSCNLASVEYYNPTTDK 278
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 30/252 (11%)
Query: 45 PACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 104
R + ++ K +++VGG+ SV +D + E W V ++P R +V
Sbjct: 4 VRTRLRTPMNLPKLMVVVGGQAPKAIR--SVECYDFKEERWHQV---AELPSRRCRAGMV 58
Query: 105 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 164
+ ++ GG +G R + + +D W + RS AA+ + L
Sbjct: 59 YMAGLVFAVGGFNGSLR-VRTVDSYDPVKDQWTSVANM---RDRRSTLGAAVLNGL-LYA 113
Query: 165 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYIAGG--GS 219
GG S L+ + + + ++ W + R+ + G Y GG +
Sbjct: 114 VGGFDGSTGLSSVEAYNIKSNEWFHV------APMNTRRSSVGVGVVGGLLYAVGGYDVA 167
Query: 220 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK-KEPS 278
++ + ++ EW+ + T G + ++ + L A GG
Sbjct: 168 SRQCLSTVECYNATTNEWTYI----AEMSTRRSGAGVGVL----NNLLYAVGGHDGPLVR 219
Query: 279 NQVEVLSIEKNE 290
VEV N
Sbjct: 220 KSVEVYDPTTNA 231
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 29/214 (13%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+ VGG G+ L V+ N W + P+ + G +
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVA----------PMNTR-RSSVGVGVVGGLLY 159
Query: 61 LVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK 119
VGG + + +V ++ T W+ + ++ RSG V +++L GG DG
Sbjct: 160 AVGGYDVASRQCLSTVECYNATTNEWTYI---AEMSTRRSGAGVGVLNNLLYAVGGHDGP 216
Query: 120 RRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLND 176
+ ++D + W + R N + L + GG S L
Sbjct: 217 LV-RKSVEVYDPTTNAWRQVADM------NMCRRNAGVCAVNGL-LYVVGGDDGSCNLAS 268
Query: 177 LYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLCG 209
+ + T WT + + R+ V+
Sbjct: 269 VEYYNPTTDKWTV--VSSCMSTGRSYAGVTVIDK 300
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 31/211 (14%)
Query: 98 RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157
T + ++++ GG+ K + + +D K W + PS R
Sbjct: 6 TRLRTPMNLPKLMVVVGGQAPK--AIRSVECYDFKEERWHQVAEL---PSRRCRAGMVYM 60
Query: 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYI 214
+ GG + S + + S D WT + + R+ + Y
Sbjct: 61 AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWTSV------ANMRDRRSTLGAAVLNGLLYA 113
Query: 215 AGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274
GG + ++I EW + ++ + + +V L A GG
Sbjct: 114 VGGFDGSTGLSSVEAYNIKSNEWF-HVAPMNTRRS---SVGVGVV----GGLLYAVGGYD 165
Query: 275 ---KEPSNQVEVLSIEKNE----SSMG-RRS 297
++ + VE + NE + M RRS
Sbjct: 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRS 196
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 18/159 (11%)
Query: 147 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206
S R+ + K +++ GG + K + + DF+ W ++ PS R V
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQA-PKAIRSVECYDFKEERWHQVAE---LPSRRCRAGMV 58
Query: 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDF 266
+ GG + R +D +K +W+ ++ ++
Sbjct: 59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV----ANMRDRRSTLGAAVLNGL---- 110
Query: 267 LVAFGGI-KKEPSNQVEVLSIEKNE----SSMG-RRSTP 299
L A GG + VE +I+ NE + M RRS+
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV 149
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 47/298 (15%), Positives = 89/298 (29%), Gaps = 42/298 (14%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKV 59
+I G L ++ N +W + + R G + G +
Sbjct: 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLAD------------LQVPRSGLAGCVVGGLL 73
Query: 60 LLVGGKTDSGSDRV---SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE 116
VGG+ +S ++ ++ T WS + V R+ V + GG
Sbjct: 74 YAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC---APMSVPRNRIGVGVIDGHIYAVGGS 130
Query: 117 DGKRRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 173
G N + ++ + W P+ + R A+ + L GG +
Sbjct: 131 HGCIH-HNSVERYEPERDEWHLVAPM------LTRRIGVGVAVLNRL-LYAVGGFDGTNR 182
Query: 174 LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233
LN E W I + R+G + Y AGG + + +D+
Sbjct: 183 LNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239
Query: 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK-KEPSNQVEVLSIEKNE 290
W+ + + + Q + + GG + VE + +
Sbjct: 240 TETWTFV----APMKHRRSALGITVHQGR----IYVLGGYDGHTFLDSVECYDPDTDT 289
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 47/242 (19%), Positives = 76/242 (31%), Gaps = 27/242 (11%)
Query: 3 VVGGES----GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK 58
VGG + GN + N W+ + P+ +P +
Sbjct: 75 AVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA----------PMSVPRN-RIGVGVIDGH 123
Query: 59 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG 118
+ VGG SV ++ E + W +V + R G V + +L GG DG
Sbjct: 124 IYAVGGSHGCIHHN-SVERYEPERDEWHLV---APMLTRRIGVGVAVLNRLLYAVGGFDG 179
Query: 119 KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178
R LN + + W + + RS + + + GG LN +
Sbjct: 180 TNR-LNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNC-IYAAGGYDGQDQLNSVE 234
Query: 179 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238
D ET WT + R+ + + Y+ GG +D WS
Sbjct: 235 RYDVETETWTFVAPM---KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291
Query: 239 VA 240
Sbjct: 292 EV 293
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 45/265 (16%), Positives = 80/265 (30%), Gaps = 36/265 (13%)
Query: 33 LYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92
+ S +P RG G+ + GG + ++ W +
Sbjct: 7 HHHSSGLVP------RGSHAPKVGRLIYTAGGYFRQSLS--YLEAYNPSNGTWLRL---A 55
Query: 93 DIPVARSGHTVVRASSVLILFGGEDG---KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149
D+ V RSG +L GG + + L ++ + W P PR
Sbjct: 56 DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---SVPR 112
Query: 150 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGV 206
+ + D + GGS N + + E W + R G
Sbjct: 113 NRIGVGVIDGH-IYAVGGSHGCIHHNSVERYEPERDEWHLV------APMLTRRIGVGVA 165
Query: 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDF 266
+ Y GG R + + EW + ++ T G + ++ +
Sbjct: 166 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI----TAMNTIRSGAGVCVL----HNC 217
Query: 267 LVAFGGI-KKEPSNQVEVLSIEKNE 290
+ A GG ++ N VE +E
Sbjct: 218 IYAAGGYDGQDQLNSVERYDVETET 242
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 53/244 (21%), Positives = 91/244 (37%), Gaps = 32/244 (13%)
Query: 3 VVGGESGNGLLDDVQVLNFD---RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKV 59
V+GG G L V+ L++ W + + P+ + + G +
Sbjct: 67 VIGGYDGRSRLSSVECLDYTADEDGVWYSVA----------PMNVRRG-LAGATTLGDMI 115
Query: 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK 119
+ GG S S+ +D + WS++ GD+ AR G +V AS V+ GG DG
Sbjct: 116 YVSGGFDGSRRHT-SMERYDPNIDQWSML---GDMQTAREGAGLVVASGVIYCLGGYDGL 171
Query: 120 RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYS 179
LN + +D + W + + RS AL +D + + GG + L+ + +
Sbjct: 172 NI-LNSVEKYDPHTGHWTNV---TPMATKRSGAGVALLNDH-IYVVGGFDGTAHLSSVEA 226
Query: 180 LDFETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236
+ T WT + S PR + + Y G + +D +
Sbjct: 227 YNIRTDSWTTV------TSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280
Query: 237 WSVA 240
W V
Sbjct: 281 WEVV 284
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-22
Identities = 53/269 (19%), Positives = 86/269 (31%), Gaps = 34/269 (12%)
Query: 45 PACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 104
R + + + +L+VGG S V +D +T+ WS + I R V
Sbjct: 3 QGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFL---PSITRKRRYVASV 59
Query: 105 RASSVLILFGGEDGKRRKLNDLHMFDL---KSLTWLPLHCTGTGPSPRSNHVAALYDDKN 161
+ + GG DG+ R L+ + D + W + R A D
Sbjct: 60 SLHDRIYVIGGYDGRSR-LSSVECLDYTADEDGVWYSVAPM---NVRRGLAGATTLGDM- 114
Query: 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYIAGGG 218
+ + GG S+ + D W+ + R G V+ Y GG
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSML------GDMQTAREGAGLVVASGVIYCLGGY 168
Query: 219 SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEP 277
+D G W T+ + T G + L+ D + GG
Sbjct: 169 DGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALL----NDHIYVVGGFDGTAH 220
Query: 278 SNQVEVLSIEKNE----SSM-GRRSTPNA 301
+ VE +I + +SM R A
Sbjct: 221 LSSVEAYNIRTDSWTTVTSMTTPRCYVGA 249
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 46/263 (17%), Positives = 87/263 (33%), Gaps = 38/263 (14%)
Query: 3 VVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG 56
V GG N + + W PL P C L
Sbjct: 50 VAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP----------PLPSPRCL-FGLGEAL 98
Query: 57 KKVLLVGGKTDSGSDRV--SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFG 114
+ +VGG+ +R SV +D + W + +P GHTV+ ++ + G
Sbjct: 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIG 155
Query: 115 GEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174
G+ R+ LN + ++D K W L + RS A ++D + +++ G + +
Sbjct: 156 GKGSDRKCLNKMCVYDPKKFEWKEL---APMQTARSLFGATVHDGR-IIVAAGVTDTGLT 211
Query: 175 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETL------ 228
+ W + P R+ V Y GG + + + L
Sbjct: 212 SSAEVYSITDNKWAPFEAF---PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELN 268
Query: 229 ---IFDILKGEWSVAITSPSSSV 248
++ + +W + + +
Sbjct: 269 DIWRYNEEEKKWEGVLREIAYAA 291
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 3e-20
Identities = 38/232 (16%), Positives = 64/232 (27%), Gaps = 42/232 (18%)
Query: 3 VVGG---ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKV 59
VVGG + G LD V + F W + PL GH+++S V
Sbjct: 103 VVGGREIKDGERCLDSVMCYDRLSFKWGESD----------PLPYVVY-GHTVLSHMDLV 151
Query: 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK 119
++GGK + +D + W + + ARS +I+ G
Sbjct: 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDT 208
Query: 120 RRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYDDKNLLIFGG--------- 167
+ ++ + W P RS+ L GG
Sbjct: 209 GL-TSSAEVYSITDNKWAPFEAF------PQERSSLSLVSLVGT-LYAIGGFATLETESG 260
Query: 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 219
LND++ + E W + + +
Sbjct: 261 ELVPTELNDIWRYNEEEKKWEGVL-----REIAYAAGATFLPVRLNVLRLTK 307
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 39/246 (15%)
Query: 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE 116
+ ++ + +D V ++ ++V + + + GG
Sbjct: 5 DLIFMISEE--------GAVAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGL 54
Query: 117 DGKRR-----KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 171
FD WL + PSPR + + + GG
Sbjct: 55 FYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL---PSPRCLFGLGEALNS-IYVVGGREIK 110
Query: 172 ---KTLNDLYSLDFETMIWTRIKIRGFHP--SPRAGCCGVLCGTKWYIAGG-GSRKKRHA 225
+ L+ + D + W P G + Y+ GG GS +K
Sbjct: 111 DGERCLDSVMCYDRLSFKWGESD-----PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLN 165
Query: 226 ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQVEVL 284
+ ++D K EW + T+ F + ++ G+ ++ EV
Sbjct: 166 KMCVYDPKKFEWKEL----APMQTARSLFGATVH----DGRIIVAAGVTDTGLTSSAEVY 217
Query: 285 SIEKNE 290
SI N+
Sbjct: 218 SITDNK 223
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 53/277 (19%), Positives = 99/277 (35%), Gaps = 43/277 (15%)
Query: 3 VVGGESGNGLLDDVQVLN-FDRFS-----WTAASSKLYLSPSSLPLKIPACRGHSLISWG 56
VVGG + D + + F + W PL C L
Sbjct: 61 VVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP----------PLPSARCL-FGLGEVD 109
Query: 57 KKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG 115
K+ +V GK + SV +D WS V+ ++P+ GH V+ + ++ GG
Sbjct: 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGG 166
Query: 116 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN 175
+ ++ N + +++ K W L +PRS A++ K ++I GG ++
Sbjct: 167 KTDDKKCTNRVFIYNPKKGDWKDL---APMKTPRSMFGVAIHKGK-IVIAGGVTEDGLSA 222
Query: 176 DLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETL------ 228
+ + D +T W + + P R+ V Y GG + + ++
Sbjct: 223 SVEAFDLKTNKWEVMTEF----PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278
Query: 229 ---IFDILKGEWSVAITSPSS----SVTSNKGFTLVL 258
++ K EW+ + S + + L
Sbjct: 279 DIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKL 315
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 37/248 (14%), Positives = 80/248 (32%), Gaps = 40/248 (16%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+++V + + YL+ + + S+++ +V
Sbjct: 18 ILLVNDTA-------AVAYDPMENEC-------YLTALAEQI---PRNHSSIVTQQNQVY 60
Query: 61 LVGGKTDSGSDR-----VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG 115
+VGG ++ + D + W + +P AR + + + G
Sbjct: 61 VVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAG 117
Query: 116 EDGK-RRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 171
+D + L+ + +D + W L P H ++ + GG +
Sbjct: 118 KDLQTEASLDSVLCYDPVAAKWSEVKNL------PIKVYGHNVISHNGM-IYCLGGKTDD 170
Query: 172 KT-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 230
K N ++ + + W + +PR+ + K IAGG + A F
Sbjct: 171 KKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAF 227
Query: 231 DILKGEWS 238
D+ +W
Sbjct: 228 DLKTNKWE 235
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 7e-21
Identities = 45/271 (16%), Positives = 76/271 (28%), Gaps = 52/271 (19%)
Query: 39 SLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 98
P + + V + G S + + DT+ + R
Sbjct: 5 ETP---VPFKSGTGAIDNDTVYIGLG-----SAGTAWYKLDTQAKDKKWTALAAFPGGPR 56
Query: 99 SGHTVVRASSVLILFGG----EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 154
T L +FGG +G + ND+H ++ K+ +W+ L P + HV
Sbjct: 57 DQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL--MSHAPMGMAGHVT 114
Query: 155 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-------------------KIRGF 195
+++ K + GG +++ L+ T I + F
Sbjct: 115 FVHNGK-AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173
Query: 196 HP-------------SPRAGCCGVLCGTKWYIAGG-GSRKKRHAETLIFDILKGEWSVAI 241
P AG V G K ++ G R D
Sbjct: 174 DPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK 233
Query: 242 TSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 272
+P SS G + L+ GG
Sbjct: 234 LAPVSSPDGVAGGFAGISNDS----LIFAGG 260
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 3e-20
Identities = 50/361 (13%), Positives = 91/361 (25%), Gaps = 103/361 (28%)
Query: 1 MIVVGGESGNGL--LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK 58
+ + G +G LD WTA + +
Sbjct: 22 VYIGLGSAGTAWYKLD----TQAKDKKWTALA----------AFPGGPRDQATSAFIDGN 67
Query: 59 VLLVGGKTDSGSDRV----SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFG 114
+ + GG + V ++ +T W + P+ +GH + + G
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV--KLMSHAPMGMAGHVTFVHNGKAYVTG 125
Query: 115 GEDGKRRK---------------------------------LNDLHMFDLKSLTWLPLHC 141
G + L FD + W
Sbjct: 126 GVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA-- 183
Query: 142 TGTGPSP---RSNHVAALYDDKNLLIFGGSSKS-KTLNDLYSLDFETMIWTRIKIRGF-H 196
G SP + DK + G +K + ++ LDF K+
Sbjct: 184 ---GESPWYGTAGAAVVNKGDK-TWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS 239
Query: 197 PSPRAGCCGVLCGTKWYIAGGGSRK-----------------KRHAETLIFDILKGEWSV 239
P AG + AGG K K+ T I G+W
Sbjct: 240 PDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK 299
Query: 240 AITSPS-----SSVTSNKGFTLVLVQHKEKDFLVAFGGI--KKEPSNQVEVLSIEKNESS 292
+ S+ N + L+ GG + +++++ N+ +
Sbjct: 300 SGELSQGRAYGVSLPWN-------------NSLLIIGGETAGGKAVTDSVLITVKDNKVT 346
Query: 293 M 293
+
Sbjct: 347 V 347
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 1e-13
Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 146 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG 205
P P + A+ +D + I GS+ Y LD + + F PR
Sbjct: 7 PVPFKSGTGAIDNDT-VYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATS 61
Query: 206 VLCGTKWYIAGGGSRKKRHAETL-----IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 260
Y+ GG + + ++ W ++ + G +
Sbjct: 62 AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMA---GHVTFVHN 118
Query: 261 HKEKDFLVAFGGIKKEPSNQ-VEVLSIEKNESSMGRRSTPNAKGPG 305
K GG+ + N E L+ +S+ + +
Sbjct: 119 GK----AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKK 160
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 1e-05
Identities = 45/283 (15%), Positives = 82/283 (28%), Gaps = 38/283 (13%)
Query: 1 MIVVGGE-SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKV 59
+ +GG SG + +V + +WT+ + ++P L
Sbjct: 300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN-AKVNPMLTA------DKQGLYRSDNHA 352
Query: 60 LLVGGKT----DSGSDRVSVWTFDTETECW----SVVEAKGDIPVARSGHTVVRASS--- 108
L G K +G W + + + +G P A G+ V+ +
Sbjct: 353 WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGK 412
Query: 109 VLILFGGEDGKRRK-LNDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAALYDDKNL 162
+L G D + + H+ L T + R+ H + + D +
Sbjct: 413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA---SNGLYFARTFHTSVVLPDGST 469
Query: 163 LIFGGSSKSKTLNDLYSL------DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 216
I GG + D + E + + + + G + G
Sbjct: 470 FITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 529
Query: 217 G--GSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFT 255
G G H + IF L T P + TS +
Sbjct: 530 GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQSVK 572
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 2e-04
Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 25/186 (13%)
Query: 47 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 106
C G S+ G+ ++V G G+D +D+ ++ W D+ VAR +
Sbjct: 245 CPGISMDGNGQ--IVVTG----GNDAKKTSLYDSSSDSWIPG---PDMQVARGYQSSATM 295
Query: 107 S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 164
S V + GG + ++ S TW L P ++ D + +
Sbjct: 296 SDGRVFTI-GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 354
Query: 165 FGGSSKS---KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW--------- 212
FG S + + + + +K G S R +CG
Sbjct: 355 FGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI 413
Query: 213 YIAGGG 218
GG
Sbjct: 414 LTFGGS 419
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 14/151 (9%)
Query: 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 531
++ + + +LA AL E AEK + + +E + ++ME+ + +L
Sbjct: 89 NRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL 148
Query: 532 AGLELAQEEANSLSNIVHSDNVRLEHDV--------------AFLKAVLDDTQKELHSTR 577
+ E+A+ V V +E D+ A L+ + L S
Sbjct: 149 KEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLE 208
Query: 578 GVLAGERARAFQLQVEVFHLKQRLQSLENRA 608
+ + + E+ L +L+ E RA
Sbjct: 209 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRA 239
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 18/96 (18%), Positives = 38/96 (39%)
Query: 512 EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 571
++KK+ + E ++ E ++ A S + + V L+ + + LD +
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62
Query: 572 ELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 607
L + L +A + +V L +R+Q E
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEE 98
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 21/137 (15%), Positives = 52/137 (37%)
Query: 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 531
+ K+ A + L A E AEK + + +++ +E++ +E+L
Sbjct: 47 QKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERL 106
Query: 532 AGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQ 591
A EEA ++ +E + ++ + +L + + + ++
Sbjct: 107 ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166
Query: 592 VEVFHLKQRLQSLENRA 608
++ ++ L+ E RA
Sbjct: 167 RKLVIIESDLERAEERA 183
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 8e-05
Identities = 72/575 (12%), Positives = 161/575 (28%), Gaps = 154/575 (26%)
Query: 139 LHCTGTGPSPRS-------NHVAALYDDKN--LLIF------GGSSKSKTLNDLYSLDFE 183
C P+S +H+ D + L +F K + ++ ++++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 184 TMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 243
+ + IK PS T+ YI R + + + +F +++V+
Sbjct: 93 -FLMSPIKTEQRQPSMM---------TRMYIE---QRDRLYNDNQVFA----KYNVSRLQ 135
Query: 244 PSSSVTSNKGFTLVLVQHKEKDFLVAFG--GIKKEPSNQV---EVLSIEKNES------- 291
P + L++ + ++ G G K +V K +
Sbjct: 136 PYLKLRQ------ALLELRPAKNVLIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIF 185
Query: 292 --SMGRRSTPNAK-GPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGS 348
++ ++P Q L + + + R + L ++
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSK-P 242
Query: 349 GRKSLSEFALV-----DPNPI------------SGNVSLGKQFQNEEEYSTAVKMEKNS- 390
L LV + + + T + ++ +S
Sbjct: 243 YENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSM 296
Query: 391 ---EDETS--FVQTTENRKNQSDLGAQT--------SICVGKTNIDEAPLFDY---ENSN 434
DE ++ + R DL + SI + ++ D +D N +
Sbjct: 297 TLTPDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353
Query: 435 PLVQGIGNFHVDN-----------DNVIFPDNDK--SGALSG--PSSIYQFYESKMAALI 479
L I + ++ +FP + + LS I + L
Sbjct: 354 KLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 480 RKNGILEGQLAAALVNREAAEKNFS---------SVLKSRQEMEKKLADSLKEMELLKEK 530
+ +LV ++ E S L++ + + + D +
Sbjct: 413 KY----------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK--TFD 460
Query: 531 LAGLELAQEEANSLSNIV-HSDNVRLEHDVAFLKAVLDD----TQKELHSTRGVLAGERA 585
L + S+I H N+ + + V D QK H + A
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 586 RAFQLQVEVF---------HLKQRLQSLENRAPTP 611
Q++ + ++ + ++ + P
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEME---KKLADSLKEMELLK 528
E K+ L+ KN LE ++A E AE+ E+E K + ++LK +E
Sbjct: 6 EDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQA 65
Query: 529 EKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAF 588
EK + E EE ++ E F + + +K + L ++ +
Sbjct: 66 EKYSQKEDKYEEEIK---VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 122
Query: 589 QLQVEVFHLKQRLQSLENR 607
+ E+ L+ +++ L ++
Sbjct: 123 AISEEMKQLEDKVEELLSK 141
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 7/142 (4%)
Query: 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 531
+ +M L + E + + A+ + ME + KE +LL+E++
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013
Query: 532 AGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK---ELHSTRGVLAGERARAF 588
+ L E + + + E ++ L+ L +K EL + L GE +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073
Query: 589 ----QLQVEVFHLKQRLQSLEN 606
+LQ ++ LK +L E
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEE 1095
|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 530
E KM +L+++ L+ Q+ A N AE+ ++K++ ++E K+ + K +E +E
Sbjct: 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98
Query: 531 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 573
A L + +LE + + LK +DD + L
Sbjct: 99 NAELTAKKR--------------KLEDECSELKRDIDDLELTL 127
|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 6e-04
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 540
K L+ QL A + KS EM K ++ L+E+ LE ++ +
Sbjct: 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66
Query: 541 ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR 600
+ D L+A+L+ +++ ++ +AR LQ EV HLK
Sbjct: 67 --------------TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112
Query: 601 LQSLEN 606
L+ +E
Sbjct: 113 LEKVEG 118
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 617 | |||
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.96 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.94 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.98 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.93 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.87 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.69 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.63 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.51 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.47 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.47 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.45 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.42 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.4 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.32 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.28 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.2 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.19 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.17 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.15 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.13 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.08 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.08 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.05 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.99 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.96 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.83 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.82 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.82 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.78 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.78 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.77 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.72 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.71 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.71 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 96.7 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.67 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.66 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.65 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.61 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.47 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.45 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.44 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.42 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.4 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.38 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.38 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.3 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.27 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.26 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.21 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.2 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.17 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.17 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 96.15 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 96.14 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.13 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.1 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.1 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.09 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.07 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.06 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 95.98 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.89 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 95.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 95.88 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 95.87 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 95.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.82 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.81 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.79 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.77 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.77 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.76 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.76 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 95.65 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.6 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 95.56 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 95.56 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 95.56 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.56 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.54 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.54 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 95.47 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 95.46 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 95.44 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 95.44 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.43 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 95.42 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.39 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 95.36 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 95.36 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.36 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 95.31 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 95.25 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.19 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 95.18 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.14 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.14 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 95.1 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 95.09 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 95.08 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.08 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 95.06 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 95.04 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 94.97 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 94.93 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 94.83 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 94.82 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 94.8 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.8 | |
| 2ocy_A | 154 | RAB guanine nucleotide exchange factor SEC2; RAB, | 94.77 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 94.75 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 94.74 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.71 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.7 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 94.69 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 94.68 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.65 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 94.62 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.58 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 94.58 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 94.54 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.53 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 94.53 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 94.52 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 94.51 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 94.45 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 94.44 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 94.44 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 94.41 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 94.41 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.4 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 94.35 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 94.34 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 94.31 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 94.28 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 94.22 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 94.22 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 94.19 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 94.15 | |
| 3ol1_A | 119 | Vimentin; structural genomics, PSI-2, protein stru | 94.15 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 94.14 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.1 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.1 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 93.98 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 93.97 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 93.92 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 93.91 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 93.86 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 93.63 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 93.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 93.57 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 93.55 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 93.53 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 93.46 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 93.42 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 93.22 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 93.2 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 93.18 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.12 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 93.07 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 93.01 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 92.99 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 92.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 92.85 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 92.84 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 92.78 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 92.75 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 92.71 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 92.66 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 92.4 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 92.35 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 92.28 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 92.27 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 92.11 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 92.04 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 91.84 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 91.75 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 91.66 | |
| 1ic2_A | 81 | Tropomyosin alpha chain, skeletal muscle; alpha-he | 91.65 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 91.65 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 91.61 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 91.48 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 91.36 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 91.36 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 91.23 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 91.19 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 91.13 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 90.64 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 90.63 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 90.36 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 90.29 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 89.61 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 89.37 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 89.18 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 89.11 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 88.88 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 88.53 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 88.45 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 88.16 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 88.1 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 88.07 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 87.98 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 87.17 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 87.02 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 86.92 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 86.43 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 86.39 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 86.22 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 86.01 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 85.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 85.47 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 85.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 84.98 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 84.97 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 84.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 84.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 84.6 | |
| 2b9c_A | 147 | Striated-muscle alpha tropomyosin; alpha-helix, co | 84.45 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 83.89 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 83.17 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 82.95 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 82.69 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 82.28 | |
| 3uux_B | 242 | Mitochondrial division protein 1; tetratricopeptid | 82.07 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 82.06 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 82.02 | |
| 3hnw_A | 138 | Uncharacterized protein; coiled-coil, structural g | 81.97 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 81.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 81.2 | |
| 2akf_A | 32 | Coronin-1A; coiled coil, protein binding; 1.20A {S | 80.84 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 80.77 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 80.31 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 80.03 |
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=347.24 Aligned_cols=260 Identities=17% Similarity=0.224 Sum_probs=232.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
||+|||... .+++++||+.+++|..+++ +| .+|.+|+++.++++||||||.. ....+++++||+
T Consensus 14 l~~~GG~~~---~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~ 77 (306)
T 3ii7_A 14 RIALFGGSQ---PQSCRYFNPKDYSWTDIRC----------PF-EKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNV 77 (306)
T ss_dssp EEEEECCSS---TTSEEEEETTTTEEEECCC----------CS-CCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEET
T ss_pred EEEEeCCCC---CceEEEecCCCCCEecCCC----------CC-cccceeEEEEECCEEEEEeCCC--CCCcceEEEEeC
Confidence 689999765 7899999999999999976 33 3567899999999999999986 556789999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 160 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~ 160 (617)
.+++|..++ ++|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.+ +++|.+|++|+++.++++
T Consensus 78 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~ 151 (306)
T 3ii7_A 78 VKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK---PSMLTQRCSHGMVEANGL 151 (306)
T ss_dssp TTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTE
T ss_pred CCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC---CCCcCCcceeEEEEECCE
Confidence 999999998 79999999999999999999999985555789999999999999998 489999999999999998
Q ss_pred EEEEEccCCCCCC----CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 161 NLLIFGGSSKSKT----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 161 ~LyV~GG~~~~~~----~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
|||+||...... .+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++
T Consensus 152 -iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 152 -IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp -EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred -EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 999999876554 89999999999999999765 8899999999999999999998877778899999999999
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC-CCCeEEEEECCCCccccc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-~~~dV~vyd~~~~~W~~~ 294 (617)
|+.++ ..|.+|.+|+++++. +.|||+||.++. ..+++++||+.+++|...
T Consensus 228 W~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 228 WKMVS----PMPWKGVTVKCAAVG----SIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp EEECC----CCSCCBSCCEEEEET----TEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred EEECC----CCCCCccceeEEEEC----CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 99986 356688999999885 889999998765 478999999999999664
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=348.69 Aligned_cols=263 Identities=18% Similarity=0.242 Sum_probs=233.2
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccC---CCCCCceEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT---DSGSDRVSVWT 77 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~---~~~~~~~~v~~ 77 (617)
||||||. ....++++++||+.+++|..++. +| .+|.+|+++.++++||||||.. ......+++|+
T Consensus 27 i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 94 (308)
T 1zgk_A 27 IYTAGGY-FRQSLSYLEAYNPSNGTWLRLAD----------LQ-VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 94 (308)
T ss_dssp EEEECCB-SSSBCCCEEEEETTTTEEEECCC----------CS-SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEE
T ss_pred EEEEeCc-CCCCcceEEEEcCCCCeEeECCC----------CC-cccccceEEEECCEEEEECCCcCCCCCCeecceEEE
Confidence 6899998 55678999999999999999975 33 3567899999999999999983 23334678999
Q ss_pred EECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 78 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 78 yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
||+.+++|+.++ ++|.+|.+|+++.++++||++||.+.. ..++++++||+.+++|+.+. ++|.+|++|+++++
T Consensus 95 ~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 95 YNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVL 167 (308)
T ss_dssp EETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE
T ss_pred ECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECC---CCCccccceEEEEE
Confidence 999999999998 789999999999999999999998775 36899999999999999984 79999999999999
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++ |||+||.+....++++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.......+++++||+.+++|
T Consensus 168 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 888 99999998877799999999999999999765 88999999999999999999998777789999999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccc
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 294 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~ 294 (617)
+.+. ..|.+|.+|+++++. +.|||+||.++.. .+++++||+++++|...
T Consensus 244 ~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 244 TFVA----PMKHRRSALGITVHQ----GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp EECC----CCSSCCBSCEEEEET----TEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred EECC----CCCCCccceEEEEEC----CEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 9986 456788999998885 8899999987654 88999999999999654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=341.96 Aligned_cols=262 Identities=19% Similarity=0.298 Sum_probs=230.5
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||... ..++++++||+.+++|..++. +| .+|.+|+++.++++||||||... ....+++++||+
T Consensus 18 i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~ 84 (302)
T 2xn4_A 18 MVVVGGQAP-KAIRSVECYDFKEERWHQVAE----------LP-SRRCRAGMVYMAGLVFAVGGFNG-SLRVRTVDSYDP 84 (302)
T ss_dssp EEEECCBSS-SBCCCEEEEETTTTEEEEECC----------CS-SCCBSCEEEEETTEEEEESCBCS-SSBCCCEEEEET
T ss_pred EEEECCCCC-CCCCcEEEEcCcCCcEeEccc----------CC-cccccceEEEECCEEEEEeCcCC-CccccceEEECC
Confidence 689999764 467899999999999999975 33 35678999999999999999853 345678999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 160 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~ 160 (617)
.+++|+.++ ++|.+|.+|+++.++++||++||.+... .++++++||+.+++|+.+. ++|.+|++|++++++++
T Consensus 85 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 157 (302)
T 2xn4_A 85 VKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGL 157 (302)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred CCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCE
Confidence 999999998 7999999999999999999999997753 6899999999999999994 89999999999999998
Q ss_pred EEEEEccCCCC--CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 161 NLLIFGGSSKS--KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 161 ~LyV~GG~~~~--~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
|||+||.+.. ..++++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+
T Consensus 158 -iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 158 -LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp -EEEECCEETTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred -EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence 9999998654 3588999999999999999665 889999999999999999999887777789999999999999
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 294 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~ 294 (617)
.+. ..|.+|.+|+++++. +.|||+||.++.. .+++++||+++++|...
T Consensus 234 ~~~----~~~~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 234 QVA----DMNMCRRNAGVCAVN----GLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEC----CCSSCCBSCEEEEET----TEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eCC----CCCCccccCeEEEEC----CEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 986 345678899988875 8899999987543 78999999999999654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=340.84 Aligned_cols=263 Identities=20% Similarity=0.280 Sum_probs=233.9
Q ss_pred CEEEec-CCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGG-ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG-~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+|| ......++++++||+.+++|..++. +|. +|.+|+++.++++||||||.. .....+++++||
T Consensus 17 i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~----------~p~-~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d 84 (301)
T 2vpj_A 17 LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPS----------ITR-KRRYVASVSLHDRIYVIGGYD-GRSRLSSVECLD 84 (301)
T ss_dssp EEEECCEETTTEECCCEEEEETTTTEEEECCC----------CSS-CCBSCEEEEETTEEEEECCBC-SSCBCCCEEEEE
T ss_pred EEEEeCccCCCcceeEEEEEcCCCCeEEeCCC----------CCh-hhccccEEEECCEEEEEcCCC-CCccCceEEEEE
Confidence 689999 6666788999999999999999985 333 567899999999999999985 345568999999
Q ss_pred CCCCc---EEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 80 TETEC---WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 80 ~~t~~---W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
+.+++ |+.++ ++|.+|.+|+++.++++||++||.+... .++++++||+.+++|+.+. ++|.+|.+|++++
T Consensus 85 ~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~ 157 (301)
T 2vpj_A 85 YTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLG---DMQTAREGAGLVV 157 (301)
T ss_dssp TTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEE
T ss_pred CCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECC---CCCCCcccceEEE
Confidence 99999 99997 7899999999999999999999998754 5899999999999999995 7899999999999
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
++++ ||++||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.......+++++||+.+++
T Consensus 158 ~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 158 ASGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ETTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ECCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 9988 99999998877899999999999999999654 8899999999999999999999877778899999999999
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccc
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 294 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~ 294 (617)
|+.++ ..|.+|.+|+++++. +.|||+||.++.. .+++++||+++++|...
T Consensus 234 W~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 234 WTTVT----SMTTPRCYVGATVLR----GRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp EEEEC----CCSSCCBSCEEEEET----TEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred EEECC----CCCCcccceeEEEEC----CEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 99986 346788899998885 7899999987654 68999999999999653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=350.29 Aligned_cols=259 Identities=17% Similarity=0.219 Sum_probs=224.1
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccC----C-CCCCceEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT----D-SGSDRVSV 75 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~----~-~~~~~~~v 75 (617)
||++|| +++++||+.+++|.. +++ ..+.+|.+|+++.++++|||+||.. . .....+++
T Consensus 7 l~~~GG-------~~~~~yd~~~~~W~~-~~~---------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 69 (315)
T 4asc_A 7 IFMISE-------EGAVAYDPAANECYC-ASL---------SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYF 69 (315)
T ss_dssp EEEEET-------TEEEEEETTTTEEEE-EEC---------CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEE
T ss_pred EEEEcC-------CceEEECCCCCeEec-CCC---------CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccce
Confidence 588999 689999999999986 331 1134678899999999999999962 1 22234569
Q ss_pred EEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCC--CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccE
Q 007111 76 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG--KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 153 (617)
Q Consensus 76 ~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~--~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~ 153 (617)
++||+.+++|+.++ ++|.+|.+|+++.++++||++||.+. ....++++++||+.+++|+.+. ++|.+|++|+
T Consensus 70 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~ 143 (315)
T 4asc_A 70 LQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHT 143 (315)
T ss_dssp EEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCE
T ss_pred EEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCccccee
Confidence 99999999999998 79999999999999999999999763 3457899999999999999984 7999999999
Q ss_pred EEEECCcEEEEEccC-CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEEC
Q 007111 154 AALYDDKNLLIFGGS-SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 154 a~~~~~~~LyV~GG~-~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl 232 (617)
+++++++ |||+||. .....++++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.......+++++||+
T Consensus 144 ~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 144 VLSHMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp EEEETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred EEEECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence 9999998 9999999 5667889999999999999999765 889999999999999999999987777889999999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc
Q 007111 233 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 233 ~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~ 294 (617)
.+++|+.++ ..|.+|.+|+++++. ++|||+||.++ ...+++++||+++++|+..
T Consensus 220 ~~~~W~~~~----~~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 220 TDNKWAPFE----AFPQERSSLSLVSLV----GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TTTEEEEEC----CCSSCCBSCEEEEET----TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCCeEEECC----CCCCcccceeEEEEC----CEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 999999986 356789999999886 78999999853 2368999999999999654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=340.09 Aligned_cols=259 Identities=17% Similarity=0.225 Sum_probs=221.8
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCC-----CCCceEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS-----GSDRVSV 75 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~-----~~~~~~v 75 (617)
||++||. ++++||+.+++|...+. ..+.+|.+|+++..+++||||||.... ....+.+
T Consensus 18 i~~~GG~-------~~~~yd~~~~~W~~~~~----------~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 80 (318)
T 2woz_A 18 ILLVNDT-------AAVAYDPMENECYLTAL----------AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYF 80 (318)
T ss_dssp EEEECSS-------EEEEEETTTTEEEEEEE----------CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEE
T ss_pred hhhcccc-------ceEEECCCCCceecccC----------CccCCccceEEEEECCEEEEECCcccCccccCCCccccE
Confidence 5899993 58999999999988432 223467789999999999999996321 1223469
Q ss_pred EEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCC-CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEE
Q 007111 76 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 154 (617)
Q Consensus 76 ~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~-~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a 154 (617)
++||+.+++|..++ ++|.+|.+|+++.++++||++||.+. ....++++++||+.+++|+.+. ++|.+|++|++
T Consensus 81 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~ 154 (318)
T 2woz_A 81 FQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNV 154 (318)
T ss_dssp EEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEE
T ss_pred EEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEE
Confidence 99999999999997 79999999999999999999999873 3457899999999999999994 89999999999
Q ss_pred EEECCcEEEEEccCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 155 ALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 155 ~~~~~~~LyV~GG~~-~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
++++++ |||+||.. ....++++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.......+++++||+.
T Consensus 155 ~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 230 (318)
T 2woz_A 155 ISHNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230 (318)
T ss_dssp EEETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETT
T ss_pred EEECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEEECCEEEEEcCcCCCCccceEEEEECC
Confidence 999988 99999984 456789999999999999999765 8899999999999999999998877677899999999
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC----------CCCCeEEEEECCCCccccc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~----------~~~~dV~vyd~~~~~W~~~ 294 (617)
+++|+.+. ..|.+|.+|+++++. +.|||+||.+. ...+++|+||+++++|...
T Consensus 231 ~~~W~~~~----~~p~~r~~~~~~~~~----~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 231 TNKWEVMT----EFPQERSSISLVSLA----GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp TCCEEECC----CCSSCCBSCEEEEET----TEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCeEEECC----CCCCcccceEEEEEC----CEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 99999986 356688999998886 78999999864 2368999999999999653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=319.47 Aligned_cols=251 Identities=17% Similarity=0.239 Sum_probs=212.7
Q ss_pred CCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecC---CCC
Q 007111 44 IPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGED---GKR 120 (617)
Q Consensus 44 ~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~---~~~ 120 (617)
+++|..|+++.++++||+|||. .....+++++||+.+++|..++ ++|.+|.+|+++.++++||++||.. ...
T Consensus 12 ~~~~~~~~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 86 (308)
T 1zgk_A 12 GLVPRGSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 86 (308)
T ss_dssp ---------CCCCCCEEEECCB--SSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEE
T ss_pred CeeeCCccccCCCCEEEEEeCc--CCCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCC
Confidence 4677789999999999999998 3455678999999999999997 7899999999999999999999984 333
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 200 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R 200 (617)
..++++++||+.+++|++++ ++|.+|..|++++++++ |||+||.+....++++++||+.+++|+.+..+ |.+|
T Consensus 87 ~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r 159 (308)
T 1zgk_A 87 TDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPM---LTRR 159 (308)
T ss_dssp EECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTE-EEEECCEETTEECCCEEEEETTTTEEEECCCC---SSCC
T ss_pred eecceEEEECCCCCeEeECC---CCCcCccccEEEEECCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCC---Cccc
Confidence 46899999999999999984 89999999999999988 99999998877889999999999999999765 8899
Q ss_pred cceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CC
Q 007111 201 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SN 279 (617)
Q Consensus 201 ~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~ 279 (617)
..|+++.++++|||+||.......+++++||+.+++|+.++ ..|.+|.+|+++++. +.|||+||.++.. .+
T Consensus 160 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~ 231 (308)
T 1zgk_A 160 IGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT----AMNTIRSGAGVCVLH----NCIYAAGGYDGQDQLN 231 (308)
T ss_dssp BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC----CCSSCCBSCEEEEET----TEEEEECCBCSSSBCC
T ss_pred cceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC----CCCCccccceEEEEC----CEEEEEeCCCCCCccc
Confidence 99999999999999999987777899999999999999986 356789999998885 8899999987544 78
Q ss_pred eEEEEECCCCcccc-------ccccccCccCCceeeeccCCC
Q 007111 280 QVEVLSIEKNESSM-------GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 280 dV~vyd~~~~~W~~-------~w~~~~~~~~~~v~vfGG~~~ 314 (617)
++++||+.+++|.. +..+++...++.+++|||..+
T Consensus 232 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 232 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred eEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 99999999999954 233344447899999999754
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=311.21 Aligned_cols=235 Identities=17% Similarity=0.238 Sum_probs=210.3
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||..+...++++++||+.+++|..+++ ++ .+|.+|+++.++++|||+||... ....+++++||+
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~ 131 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN----------MR-DRRSTLGAAVLNGLLYAVGGFDG-STGLSSVEAYNI 131 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECC----------CS-SCCBSCEEEEETTEEEEEEEECS-SCEEEEEEEEET
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCC----------CC-ccccceEEEEECCEEEEEcCCCC-CccCceEEEEeC
Confidence 6899999887788999999999999999986 33 35678999999999999999853 445789999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCC-CccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECC
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR-RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~-~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
.+++|+.++ ++|.+|.+|+++.++++||++||.+... ..++++++||+.+++|+.+. ++|.+|++|+++++++
T Consensus 132 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~ 205 (302)
T 2xn4_A 132 KSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNN 205 (302)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETT
T ss_pred CCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECC
Confidence 999999998 7899999999999999999999987653 35899999999999999994 8999999999999998
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+ |||+||.++....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.
T Consensus 206 ~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 206 L-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp E-EEEECCBSSSSBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred E-EEEECCCCCCcccceEEEEeCCCCCEeeCCCC---CCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 8 99999998877889999999999999999765 8899999999999999999998877778899999999999999
Q ss_pred eecCCCCCCCCCcceEEEEEe
Q 007111 240 AITSPSSSVTSNKGFTLVLVQ 260 (617)
Q Consensus 240 l~~~~~~~p~~r~~~s~v~v~ 260 (617)
++ ...|.+|..|+++++.
T Consensus 282 ~~---~~~~~~r~~~~~~~~~ 299 (302)
T 2xn4_A 282 VS---SCMSTGRSYAGVTVID 299 (302)
T ss_dssp CS---SCCSSCCBSCEEEEEE
T ss_pred CC---cccCcccccceEEEec
Confidence 75 2456789999998886
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=323.62 Aligned_cols=263 Identities=17% Similarity=0.220 Sum_probs=210.7
Q ss_pred CEEEecCCCCCccceEEEEECC--CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEccc-C---CCCCCceE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGK-T---DSGSDRVS 74 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~-~---~~~~~~~~ 74 (617)
|||+||..+ +++++||+. +++|..+++ +|..+|.+|++++++++||||||. . ......++
T Consensus 22 iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~----------~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 87 (357)
T 2uvk_A 22 VYIGLGSAG----TAWYKLDTQAKDKKWTALAA----------FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFND 87 (357)
T ss_dssp EEEECGGGT----TCEEEEETTSSSCCEEECCC----------CTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCC
T ss_pred EEEEeCcCC----CeEEEEccccCCCCeeECCC----------CCCCcCccceEEEECCEEEEEcCCCCCCCccceeecc
Confidence 689999764 489999998 499999986 443567899999999999999998 2 12334678
Q ss_pred EEEEECCCCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCCCC---------------------------------
Q 007111 75 VWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKR--------------------------------- 120 (617)
Q Consensus 75 v~~yd~~t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~~~--------------------------------- 120 (617)
+|+||+.+++|+.++ +++ .+|.+|++++++++||++||.+...
T Consensus 88 v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (357)
T 2uvk_A 88 VHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY 164 (357)
T ss_dssp EEEEETTTTEEEECS---CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred EEEEeCCCCcEEECC---CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence 999999999999998 455 8999999999999999999986431
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCC-cccEEEEECCcEEEEEccCCCC-CCCCeEEEEEC--CCCcEEEeecCCCC
Q 007111 121 RKLNDLHMFDLKSLTWLPLHCTGTGPSPR-SNHVAALYDDKNLLIFGGSSKS-KTLNDLYSLDF--ETMIWTRIKIRGFH 196 (617)
Q Consensus 121 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R-~~h~a~~~~~~~LyV~GG~~~~-~~~n~v~~yD~--~t~~W~~~~~~g~~ 196 (617)
..++++++||+.+++|+.+. ++|.+| ++|++++++++ ||||||.+.. ...++++.||+ .+++|+.+..+ ..
T Consensus 165 ~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~ 239 (357)
T 2uvk_A 165 FFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDK-TWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SS 239 (357)
T ss_dssp CCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTE-EEEECCEEETTEECCCEEEEECC---CEEEECCCS-ST
T ss_pred CCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCE-EEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CC
Confidence 24689999999999999994 688765 45999999988 9999998643 45788999987 99999999876 23
Q ss_pred CCCCcceEEEEECCEEEEEecCCCC-----------------CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEE
Q 007111 197 PSPRAGCCGVLCGTKWYIAGGGSRK-----------------KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLV 259 (617)
Q Consensus 197 P~~R~~ha~v~~~~~IyI~GG~s~~-----------------~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v 259 (617)
|.+|.+|+++.++++|||+||.+.. ....++++||+.+++|+.+.. .|.+|.+|+++++
T Consensus 240 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~~~~~~ 315 (357)
T 2uvk_A 240 PDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRAYGVSLPW 315 (357)
T ss_dssp TTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCBSSEEEEE
T ss_pred CcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcccceeEEe
Confidence 4457788899999999999996432 234678999999999999863 4568888999887
Q ss_pred eecCCcEEEEEcCCCCCC--CCeEEEEECCCCcccc
Q 007111 260 QHKEKDFLVAFGGIKKEP--SNQVEVLSIEKNESSM 293 (617)
Q Consensus 260 ~~~~~~~L~I~GG~~~~~--~~dV~vyd~~~~~W~~ 293 (617)
. +.||||||++... .++|++|++++++|..
T Consensus 316 ~----~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 316 N----NSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp T----TEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred C----CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 5 8899999987543 6899999999999843
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=309.40 Aligned_cols=235 Identities=20% Similarity=0.273 Sum_probs=210.4
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEEC
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 80 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~ 80 (617)
|||+||.. ...++++++||+.+++|..+++ ++ .+|.+|+++.++++|||+||.+......+++++||+
T Consensus 58 lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~ 125 (306)
T 3ii7_A 58 VYILGGSQ-LFPIKRMDCYNVVKDSWYSKLG----------PP-TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDT 125 (306)
T ss_dssp EEEECCBS-SSBCCEEEEEETTTTEEEEEEC----------CS-SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEET
T ss_pred EEEEeCCC-CCCcceEEEEeCCCCeEEECCC----------CC-ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeC
Confidence 68999987 6678999999999999999976 33 457789999999999999999656667789999999
Q ss_pred CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCC---ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 81 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 81 ~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~---~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
.+++|+.++ ++|.+|.+|+++.++++||++||.+.... .++++++||+.+++|+.++ ++|.+|++|+++++
T Consensus 126 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~ 199 (306)
T 3ii7_A 126 RTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFV 199 (306)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE
T ss_pred CCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEE
Confidence 999999997 79999999999999999999999876543 3899999999999999995 79999999999999
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++ |||+||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|
T Consensus 200 ~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 200 KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCC---SCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCC---CCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 988 99999998777889999999999999999665 88999999999999999999998777889999999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEee
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQH 261 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~~ 261 (617)
+.++. .|.+|.+|+++++..
T Consensus 276 ~~~~~----~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 276 VANSK----VRAFPVTSCLICVVD 295 (306)
T ss_dssp EEEEE----EECCSCTTCEEEEEE
T ss_pred EeCCC----cccccceeEEEEECC
Confidence 99873 456888999888763
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=315.94 Aligned_cols=242 Identities=17% Similarity=0.233 Sum_probs=209.4
Q ss_pred CEEEecCC-----C-CCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCC--CCCCc
Q 007111 1 MIVVGGES-----G-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD--SGSDR 72 (617)
Q Consensus 1 i~V~GG~~-----~-~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~--~~~~~ 72 (617)
|||+||.. . ....+++++||+.+++|..+++ +| .+|.+|+++.++++|||+||... .....
T Consensus 48 iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 116 (315)
T 4asc_A 48 VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP----------LP-SPRCLFGLGEALNSIYVVGGREIKDGERCL 116 (315)
T ss_dssp EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC----------BS-SCEESCEEEEETTEEEEECCEESSTTCCBC
T ss_pred EEEEcCcccCCCCCccccccceEEecCCCCeEEECCC----------CC-cchhceeEEEECCEEEEEeCCcCCCCCccc
Confidence 68999952 1 2234569999999999999976 33 46778999999999999999752 34567
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
+++++||+.+++|+.++ ++|.+|.+|+++.++++||++||.+.....++++++||+.+++|+.++ ++|.+|++|
T Consensus 117 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~ 190 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLF 190 (315)
T ss_dssp CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSC
T ss_pred ceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhce
Confidence 89999999999999998 799999999999999999999999665568999999999999999984 799999999
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------Cc
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KR 223 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~---------~~ 223 (617)
++++++++ |||+||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.. ..
T Consensus 191 ~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 266 (315)
T 4asc_A 191 GATVHDGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF---PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTE 266 (315)
T ss_dssp EEEEETTE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEEECCE-EEEEeccCCCCccceEEEEECCCCeEEECCCC---CCcccceeEEEECCEEEEECCccccCcCCccccccc
Confidence 99999998 99999998877889999999999999999764 8999999999999999999997531 34
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCC
Q 007111 224 HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 224 ~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
.+++++||+.+++|+.+. +.+|.+++++++. +.||+++..
T Consensus 267 ~~~v~~yd~~~~~W~~~~------~~~r~~~~~~~~~----~~l~v~~~~ 306 (315)
T 4asc_A 267 LNDIWRYNEEEKKWEGVL------REIAYAAGATFLP----VRLNVLRLT 306 (315)
T ss_dssp EEEEEEEETTTTEEEEEE------SCSSCCSSCEEEE----EEECGGGSE
T ss_pred cCcEEEecCCCChhhhhc------cCCcCccceEEeC----CEEEEEEeh
Confidence 678999999999999983 4468888888887 788887653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=311.13 Aligned_cols=241 Identities=22% Similarity=0.281 Sum_probs=208.2
Q ss_pred CEEEecCCC--C----CccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCC-CCCCce
Q 007111 1 MIVVGGESG--N----GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD-SGSDRV 73 (617)
Q Consensus 1 i~V~GG~~~--~----~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~-~~~~~~ 73 (617)
|||+||... . ...+++++||+.+++|..+++ +|. +|.+|+++.++++|||+||... .....+
T Consensus 59 lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~----------~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 59 VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP----------LPS-ARCLFGLGEVDDKIYVVAGKDLQTEASLD 127 (318)
T ss_dssp EEEEESSCC-------CCCBEEEEEETTTTEEEECSC----------BSS-CBCSCEEEEETTEEEEEEEEBTTTCCEEE
T ss_pred EEEECCcccCccccCCCccccEEEEeCCCCcEEECCC----------CCc-cccccceEEECCEEEEEcCccCCCCcccc
Confidence 689999531 1 133469999999999999976 333 5678999999999999999863 345578
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccE
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 153 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~ 153 (617)
++++||+.+++|+.++ ++|.+|.+|++++++++||++||.+.....++++++||+.+++|+.++ ++|.+|..|+
T Consensus 128 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~ 201 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFG 201 (318)
T ss_dssp EEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCE
T ss_pred eEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccce
Confidence 9999999999999998 789999999999999999999998766567899999999999999994 7999999999
Q ss_pred EEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------Ccc
Q 007111 154 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRH 224 (617)
Q Consensus 154 a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~---------~~~ 224 (617)
+++++++ |||+||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.... ...
T Consensus 202 ~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 277 (318)
T 2woz_A 202 VAIHKGK-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF---PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV 277 (318)
T ss_dssp EEEETTE-EEEEEEEETTEEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBC
T ss_pred EEEECCE-EEEEcCcCCCCccceEEEEECCCCeEEECCCC---CCcccceEEEEECCEEEEECCeeccCCCCceecccee
Confidence 9999998 99999998777789999999999999999765 8899999999999999999998642 346
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcC
Q 007111 225 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 272 (617)
Q Consensus 225 ~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG 272 (617)
+++|+||+.+++|+.+ .|.+|.+|+++++. ++|||+..
T Consensus 278 ~~v~~yd~~~~~W~~~------~~~~r~~~~~~~~~----~~iyi~~~ 315 (318)
T 2woz_A 278 NDIWKYEDDKKEWAGM------LKEIRYASGASCLA----TRLNLFKL 315 (318)
T ss_dssp CCEEEEETTTTEEEEE------ESCCGGGTTCEEEE----EEEEGGGC
T ss_pred eeEEEEeCCCCEehhh------cccccccccceeeC----CEEEEEEe
Confidence 8899999999999998 24578899998887 78887653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=302.93 Aligned_cols=233 Identities=22% Similarity=0.386 Sum_probs=209.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCc---EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFS---WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 77 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~---W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~ 77 (617)
|||+||..+...++++++||+.+++ |..+++ ++ .+|.+|+++.++++|||+||... ....+++++
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~----------~p-~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~ 132 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP----------MN-VRRGLAGATTLGDMIYVSGGFDG-SRRHTSMER 132 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC----------CS-SCCBSCEEEEETTEEEEECCBCS-SCBCCEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCC----------CC-CCccceeEEEECCEEEEEcccCC-CcccceEEE
Confidence 6899999877788999999999999 999976 33 35678999999999999999854 344789999
Q ss_pred EECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 78 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 78 yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
||+.+++|+.++ ++|.+|.+|+++.++++||++||.+... .++++++||+.+++|+.+. ++|.+|++|+++.+
T Consensus 133 ~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 205 (301)
T 2vpj_A 133 YDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALL 205 (301)
T ss_dssp EETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE
T ss_pred EcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCC---CCCcccccceEEEE
Confidence 999999999998 7899999999999999999999987764 6899999999999999994 89999999999999
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++ |||+||.+.....+++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.......+++++||+.+++|
T Consensus 206 ~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 206 NDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM---TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp TTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCC---CCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 988 99999998877789999999999999999754 88999999999999999999988777778999999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEe
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQ 260 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~ 260 (617)
+.++ ..|.+|.+|+++++.
T Consensus 282 ~~~~----~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 282 EVVT----SMGTQRCDAGVCVLR 300 (301)
T ss_dssp EEEE----EEEEEEESCEEEEEE
T ss_pred EEcC----CCCcccccceEEEeC
Confidence 9986 356789999988874
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=304.76 Aligned_cols=251 Identities=19% Similarity=0.247 Sum_probs=199.6
Q ss_pred CCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECC--CCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeec-C
Q 007111 42 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE--TECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGE-D 117 (617)
Q Consensus 42 ~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~-~ 117 (617)
+|. +|.+|+++.++++|||+||... +++|+||+. +++|..++ ++| .+|.+|++++++++|||+||. .
T Consensus 6 lP~-~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~ 76 (357)
T 2uvk_A 6 TPV-PFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGK 76 (357)
T ss_dssp CSS-CCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEE
T ss_pred CCc-cccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCC
Confidence 444 4567888889999999999853 379999998 48999998 788 899999999999999999998 3
Q ss_pred ---CCCCccCeEEEEECCCCcEEEeecCCCCC-CCCcccEEEEECCcEEEEEccCCCC----------------------
Q 007111 118 ---GKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKS---------------------- 171 (617)
Q Consensus 118 ---~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~h~a~~~~~~~LyV~GG~~~~---------------------- 171 (617)
.....++++|+||+.+++|+++. +++ .+|++|++++++++ |||+||.+..
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHNGK-AYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECS---CCCSSCCSSEEEEEETTE-EEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECC---CCCCcccccceEEEECCE-EEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 23346899999999999999996 454 99999999999888 9999998643
Q ss_pred ------------CCCCeEEEEECCCCcEEEeecCCCCCCC-CcceEEEEECCEEEEEecCCCC-CccceEEEEEC--CCC
Q 007111 172 ------------KTLNDLYSLDFETMIWTRIKIRGFHPSP-RAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDI--LKG 235 (617)
Q Consensus 172 ------------~~~n~v~~yD~~t~~W~~~~~~g~~P~~-R~~ha~v~~~~~IyI~GG~s~~-~~~~~v~~yDl--~~~ 235 (617)
..++++++||+.+++|+.+..+ |.+ |.+|+++.++++|||+||.... ...++++.||+ .++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~ 229 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES---PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL 229 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC---SSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---C
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECCCC---CCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC
Confidence 2578999999999999999775 555 4559999999999999997643 34678999987 889
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC------------------CCCeEEEEECCCCcccc----
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE------------------PSNQVEVLSIEKNESSM---- 293 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~------------------~~~dV~vyd~~~~~W~~---- 293 (617)
+|+.+..+ ..|..+.+|+++++. +.|||+||.+.. ..+++++||+.+++|..
T Consensus 230 ~W~~~~~~--~~~~~~~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 303 (357)
T 2uvk_A 230 KWNKLAPV--SSPDGVAGGFAGISN----DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303 (357)
T ss_dssp EEEECCCS--STTTCCBSCEEEEET----TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred cEEecCCC--CCCcccccceEEEEC----CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence 99998743 345567788888876 889999996421 13689999999999954
Q ss_pred ---ccccccCccCCceeeeccCCC
Q 007111 294 ---GRRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 294 ---~w~~~~~~~~~~v~vfGG~~~ 314 (617)
+..+++...++.+++|||...
T Consensus 304 p~~r~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 304 SQGRAYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp SSCCBSSEEEEETTEEEEEEEECG
T ss_pred CCCcccceeEEeCCEEEEEeeeCC
Confidence 233444457899999999854
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=334.99 Aligned_cols=268 Identities=16% Similarity=0.192 Sum_probs=219.8
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEcc-ccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAAS-SKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWT 77 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~-~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~ 77 (617)
|||+||... ..++++++||+.+++|..++ +++ . +..+.+|.+|+++++ +++||||||........+++|+
T Consensus 400 iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p----~--~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 400 VFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVS----S--SEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp EEEECCBSS-SBCCCEEEEEECSSCEEEEECCCC----C--SCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred EEEECCCCC-CCcCcEEEEECCCCeEEEeccCCC----C--CCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 699999877 78899999999999999987 421 0 012456789999999 9999999999766556789999
Q ss_pred EECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 78 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 78 yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
||+.+++|+.++ ++|.+|++|+++++ +++|||+||.+... ++++||+.+++|+.+.+.+++|.+|++|++++
T Consensus 473 yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v 545 (695)
T 2zwa_A 473 FDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE 545 (695)
T ss_dssp EETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEE
T ss_pred EeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEE
Confidence 999999999997 79999999999997 99999999998764 89999999999999987677999999999888
Q ss_pred EC---CcEEEEEccCCC--CCCCCeEEEEECCCCc------EEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCCCC--
Q 007111 157 YD---DKNLLIFGGSSK--SKTLNDLYSLDFETMI------WTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKK-- 222 (617)
Q Consensus 157 ~~---~~~LyV~GG~~~--~~~~n~v~~yD~~t~~------W~~~~~~g~~P~~R~~ha~v~~~-~~IyI~GG~s~~~-- 222 (617)
++ ++ |||+||... ...++++++||+.+++ |+.+..+ ++.+|.+|+++.++ ++|||+||.+...
T Consensus 546 ~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 546 FDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGLF 622 (695)
T ss_dssp EETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCCC
T ss_pred EeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEeCCCEEEEECCccCCCCC
Confidence 76 55 999999854 3678999999999999 8988774 35899999999998 9999999986543
Q ss_pred -ccceEEEEECCCCcEEEeecCCCC---CCCCCcceEEEEEeecCCcEEEEEcCCC-----CCCCCeEEEEECCC
Q 007111 223 -RHAETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIK-----KEPSNQVEVLSIEK 288 (617)
Q Consensus 223 -~~~~v~~yDl~~~~W~~l~~~~~~---~p~~r~~~s~v~v~~~~~~~L~I~GG~~-----~~~~~dV~vyd~~~ 288 (617)
..+++++||+.+++|+.+..+... .++.+.+|+++++. ++.|||+||.. |...+++|.+|+..
T Consensus 623 ~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~---~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 623 DRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTS---MGTIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp CTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred CCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeC---CCEEEEEeCCccCcCccccccceEEEEEEc
Confidence 578999999999999965422111 12367789888776 23799999953 22357888888754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=325.53 Aligned_cols=254 Identities=17% Similarity=0.233 Sum_probs=211.3
Q ss_pred CCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEee-c--cCCCCCCcceeEEEEE--CCEEEEEeecC
Q 007111 43 KIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE-A--KGDIPVARSGHTVVRA--SSVLILFGGED 117 (617)
Q Consensus 43 ~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~--~g~~P~~R~~~s~~~~--~~~IYv~GG~~ 117 (617)
.+++|++|++ +++++||||||... ...+++|+||+.+++|..++ . .+.+|.+|.+|+++++ +++|||+||.+
T Consensus 385 ~p~rr~g~~~-~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~ 461 (695)
T 2zwa_A 385 PINRKFGDVD-VAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK 461 (695)
T ss_dssp TTCCBSCEEE-ECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBS
T ss_pred CCCCceeEEE-EECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCC
Confidence 3556766554 48999999999855 56789999999999999998 3 3568999999999999 99999999998
Q ss_pred CCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCC
Q 007111 118 GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 196 (617)
Q Consensus 118 ~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~ 196 (617)
.....++++|+||+.+++|+.+ +++|.+|++|+++++ +++ ||||||.+... ++++||+.+++|+.+...+..
T Consensus 462 ~~~~~~~dv~~yd~~t~~W~~~---~~~p~~R~~h~~~~~~~~~-iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~ 534 (695)
T 2zwa_A 462 APHQGLSDNWIFDMKTREWSMI---KSLSHTRFRHSACSLPDGN-VLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEF 534 (695)
T ss_dssp STTCBCCCCEEEETTTTEEEEC---CCCSBCCBSCEEEECTTSC-EEEECCBCSSC---SEEEEETTTTEEEECCCSSGG
T ss_pred CCCCccccEEEEeCCCCcEEEC---CCCCCCcccceEEEEcCCE-EEEECCCCCCC---CEEEEECCCCceEEccCCCCC
Confidence 8766789999999999999999 489999999999997 777 99999997655 899999999999999986667
Q ss_pred CCCCcceEEEEEC---CEEEEEecCCCC--CccceEEEEECCCCc------EEEeecCCCCCCCCCcceEEEEEeecCCc
Q 007111 197 PSPRAGCCGVLCG---TKWYIAGGGSRK--KRHAETLIFDILKGE------WSVAITSPSSSVTSNKGFTLVLVQHKEKD 265 (617)
Q Consensus 197 P~~R~~ha~v~~~---~~IyI~GG~s~~--~~~~~v~~yDl~~~~------W~~l~~~~~~~p~~r~~~s~v~v~~~~~~ 265 (617)
|.+|.+|+++.++ ++|||+||.... ...+++|+||+.++. |+.+... ++.+|.+|+++++. ++
T Consensus 535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p~~~R~~~~~~~~~---~~ 608 (695)
T 2zwa_A 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---PLFQRYGSQIKYIT---PR 608 (695)
T ss_dssp GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---GGGCCBSCEEEEEE---TT
T ss_pred CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---CCCCcccceEEEeC---CC
Confidence 9999999987776 899999998543 567899999999999 8888642 25789999998876 37
Q ss_pred EEEEEcCCCCC----CCCeEEEEECCCCccccc--------------cccccCccCC-ceeeeccC
Q 007111 266 FLVAFGGIKKE----PSNQVEVLSIEKNESSMG--------------RRSTPNAKGP-GQLLFEKR 312 (617)
Q Consensus 266 ~L~I~GG~~~~----~~~dV~vyd~~~~~W~~~--------------w~~~~~~~~~-~v~vfGG~ 312 (617)
.|||+||.++. ..++|++||+.+++|... ..+++....+ .+++|||.
T Consensus 609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred EEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 89999998643 378999999999999531 1122332344 89999996
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-30 Score=292.25 Aligned_cols=288 Identities=11% Similarity=0.020 Sum_probs=213.7
Q ss_pred CEEEecCCCCC------ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcc-cceEEEE-ECCEEEEEcccCCCCCCc
Q 007111 1 MIVVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC-RGHSLIS-WGKKVLLVGGKTDSGSDR 72 (617)
Q Consensus 1 i~V~GG~~~~~------~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r-~~hs~v~-~g~~lyV~GG~~~~~~~~ 72 (617)
|||+||..... ..+++++||+.+++|..+..+ +.++. ..++++. .+++||++||....
T Consensus 200 l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----------~~~~~~~~~~~~~~~~g~lyv~GG~~~~---- 265 (656)
T 1k3i_A 200 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----------VTKHDMFCPGISMDGNGQIVVTGGNDAK---- 265 (656)
T ss_dssp EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----------ECSCCCSSCEEEECTTSCEEEECSSSTT----
T ss_pred EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc----------CCCCCCccccccCCCCCCEEEeCCCCCC----
Confidence 68999976432 345799999999999988763 22322 2333443 58999999998542
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC--CCCCCCC
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPSPR 149 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~P~~R 149 (617)
++++||+.+++|..++ +||.+|.+|+++++ +++||++||.......++++++||+.+++|+.++.. .+++.+|
T Consensus 266 -~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 266 -KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 341 (656)
T ss_dssp -CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred -ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence 6999999999999997 79999999999999 999999999644445789999999999999998432 2455555
Q ss_pred cccEEEEECCcEEEEEccCCCC----CCCCeEEEEECCCCcEEEeecCCCC----CCCCcceEEEE---ECCEEEEEecC
Q 007111 150 SNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETMIWTRIKIRGFH----PSPRAGCCGVL---CGTKWYIAGGG 218 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG~~~~----~~~n~v~~yD~~t~~W~~~~~~g~~----P~~R~~ha~v~---~~~~IyI~GG~ 218 (617)
.. +++..++. +|+|||.++. ...++++.||+.++.|......... +.++..++++. .+++|||+||.
T Consensus 342 ~~-~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 342 KQ-GLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp TT-GGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cc-ceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 43 44446777 9999998653 3478899999999998865432111 12333444543 48999999996
Q ss_pred CC---CCccc---eEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC-------CCCCeEEEEE
Q 007111 219 SR---KKRHA---ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLS 285 (617)
Q Consensus 219 s~---~~~~~---~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~-------~~~~dV~vyd 285 (617)
.. ...++ .+++||+.++.|..+. ...+|.+|..|+++++. +++|||+||.+. ...+++++||
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~~~~~l~---~g~i~v~GG~~~~~~~~~~~~~~~v~~yd 494 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFHTSVVLP---DGSTFITGGQRRGIPFEDSTPVFTPEIYV 494 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSCEEEECT---TSCEEEECCBSBCCTTCCCSBCCCCEEEE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccCCeEECC---CCCEEEECCcccCcCcCCCCcccceEEEc
Confidence 43 22334 7899999999999875 23567889999988884 378999999752 2368999999
Q ss_pred CCCCcccc--------ccccccC-ccCCceeeeccCC
Q 007111 286 IEKNESSM--------GRRSTPN-AKGPGQLLFEKRS 313 (617)
Q Consensus 286 ~~~~~W~~--------~w~~~~~-~~~~~v~vfGG~~ 313 (617)
+.+++|.. ..|.++. ..++.++++||..
T Consensus 495 p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 495 PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 99999954 3344333 2488999999964
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=266.16 Aligned_cols=261 Identities=15% Similarity=0.161 Sum_probs=196.6
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
|||+||..+. ++++||+.+++|..+++ ++. +|..|+++.+ +++|||+||........+++++||
T Consensus 256 lyv~GG~~~~----~v~~yd~~t~~W~~~~~----------~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 256 IVVTGGNDAK----KTSLYDSSSDSWIPGPD----------MQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp EEEECSSSTT----CEEEEEGGGTEEEECCC----------CSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred EEEeCCCCCC----ceEEecCcCCceeECCC----------CCc-cccccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence 6899997643 79999999999999976 333 5667999998 999999999645555678899999
Q ss_pred CCCCcEEEeeccC--CCCCCcceeEEEEECCEEEEEeecCCCC---CccCeEEEEECCCCcEEEeecCCCCCC------C
Q 007111 80 TETECWSVVEAKG--DIPVARSGHTVVRASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPS------P 148 (617)
Q Consensus 80 ~~t~~W~~~~~~g--~~P~~R~~~s~~~~~~~IYv~GG~~~~~---~~~~~v~~yD~~t~~W~~l~~~g~~P~------~ 148 (617)
+.+++|..++..+ +++..|.. +++..++++|++||.++.. ...++++.||+.++.|.... +..+. +
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~--~~~~~~~~~~~~ 397 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA--GKRQSNRGVAPD 397 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE--EECEETTEECCC
T ss_pred CCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecC--CccccccccCCC
Confidence 9999999985321 34555543 4555789999999987531 24689999999999987643 22222 3
Q ss_pred CcccEEEE---ECCcEEEEEccCCC---CCCCC---eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecC
Q 007111 149 RSNHVAAL---YDDKNLLIFGGSSK---SKTLN---DLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGG 218 (617)
Q Consensus 149 R~~h~a~~---~~~~~LyV~GG~~~---~~~~n---~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~ 218 (617)
+..+++++ ++++ |||+||... ...++ .+++||+.+++|..+. .+.+|.+|..|+++.+ +++|||+||.
T Consensus 398 ~~~~~av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~ 475 (656)
T 1k3i_A 398 AMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQ 475 (656)
T ss_dssp CBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred CCCCceEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCc
Confidence 34455554 3566 999999642 33445 7999999999999987 2345899999998888 9999999997
Q ss_pred CC------CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC-CC---CCCeEEEEECC
Q 007111 219 SR------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK-KE---PSNQVEVLSIE 287 (617)
Q Consensus 219 s~------~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~-~~---~~~dV~vyd~~ 287 (617)
.. .....++++||+.+++|+.+. ..+.+|.+|+++++.. ++.|||+||.. +. ...++++|.|.
T Consensus 476 ~~~~~~~~~~~~~~v~~ydp~t~~W~~~~----~~~~~R~~hs~a~ll~--dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 476 RRGIPFEDSTPVFTPEIYVPEQDTFYKQN----PNSIVRVYHSISLLLP--DGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp SBCCTTCCCSBCCCCEEEEGGGTEEEECC----CCSSCCCTTEEEEECT--TSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred ccCcCcCCCCcccceEEEcCCCCceeecC----CCCCccccccHhhcCC--CcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 53 244678999999999999975 3467899999887732 26799999963 22 24567888764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0017 Score=64.76 Aligned_cols=163 Identities=17% Similarity=0.043 Sum_probs=109.8
Q ss_pred cceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEE
Q 007111 48 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 48 ~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
+-+.+...++.+|+-.|..+ .+.+..+|+.+++-...- ++|..-.+.+++..+++||+.... .+.++
T Consensus 22 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~ 88 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------NHEGF 88 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------CCEEE
Confidence 34677788999999988743 247999999999865544 466677788888999999998532 46799
Q ss_pred EEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEE
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 206 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v 206 (617)
+||+.+.+-..- ++.+..+.+++.-++. +|+.-|. +.++.+|+.+.+-..-...+..+.+... --+.
T Consensus 89 v~D~~tl~~~~t-----i~~~~~Gwglt~dg~~-L~vSdgs------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 89 VYDLATLTPRAR-----FRYPGEGWALTSDDSH-LYMSDGT------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEETTTTEEEEE-----EECSSCCCEEEECSSC-EEEECSS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEE-----EeCCCCceEEeeCCCE-EEEECCC------CeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 999998875422 2223356666654555 8887662 4699999998765543332222223221 2344
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
..+++||+---. .+++.+.|+.+.+-...
T Consensus 157 ~~~G~lyanvw~-----s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 157 WVNGELLANVWL-----TSRIARIDPASGKVVAW 185 (243)
T ss_dssp EETTEEEEEETT-----TTEEEEECTTTCBEEEE
T ss_pred EeCCEEEEEECC-----CCeEEEEECCCCCEEEE
Confidence 568998865322 35799999999875443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.012 Score=60.34 Aligned_cols=231 Identities=10% Similarity=-0.016 Sum_probs=132.8
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeecc
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAK 91 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~ 91 (617)
-+++..||+.+.++...-..... + .+. ....+.++..++++|+.... ...+.++|+.+.+. ..++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n-~----~~l-g~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~-- 81 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN-G----FKL-GDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRIT-- 81 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH-S----SCC-BSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEEE--
T ss_pred CceEEEEECCCCEEhhhhHhhhc-C----ccc-CccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEcC--
Confidence 46799999999988643210000 0 111 12235677789999999753 24799999998875 3343
Q ss_pred CCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCCCCCC-CCcccEEEEECCcEEEEEccC
Q 007111 92 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPS-PRSNHVAALYDDKNLLIFGGS 168 (617)
Q Consensus 92 g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~ 168 (617)
.. ...+.++. .++++|+.... .+.++++|+.+.+-.. ++ .+.... ...-+.++..+++ +|+..-
T Consensus 82 -~~---~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~~~~~-lyv~~~- 148 (328)
T 3dsm_A 82 -GF---TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQYGKY-VYVNCW- 148 (328)
T ss_dssp -CC---SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEEETTE-EEEEEC-
T ss_pred -CC---CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEEECCE-EEEEcC-
Confidence 11 22334444 67899998642 3679999999987543 32 122100 0011234444444 888742
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC-----ccceEEEEECCCCcEEEeec
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK-----RHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~-----~~~~v~~yDl~~~~W~~l~~ 242 (617)
. .-+.|.+||+.+++.......+..| . .++.. ++++|+........ ....++++|+.+.+....-.
T Consensus 149 ~---~~~~v~viD~~t~~~~~~i~~g~~p--~---~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 149 S---YQNRILKIDTETDKVVDELTIGIQP--T---SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp T---TCCEEEEEETTTTEEEEEEECSSCB--C---CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred C---CCCEEEEEECCCCeEEEEEEcCCCc--c---ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 1 1256999999998876544433222 2 22333 67888875322111 13679999999887654221
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.+. .. ....+.+. .+...+|+..+ .|+++|+.+.+.
T Consensus 221 ~~~----g~-~p~~la~~-~d~~~lyv~~~-------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 221 FKL----GD-WPSEVQLN-GTRDTLYWINN-------DIWRMPVEADRV 256 (328)
T ss_dssp CCT----TC-CCEEEEEC-TTSCEEEEESS-------SEEEEETTCSSC
T ss_pred cCC----CC-CceeEEEe-cCCCEEEEEcc-------EEEEEECCCCce
Confidence 111 11 12233333 23467888654 689999987764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0069 Score=62.14 Aligned_cols=229 Identities=10% Similarity=0.023 Sum_probs=127.3
Q ss_pred ceEEEEECCCCcEE-EccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEE-eec
Q 007111 14 DDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~-~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~ 90 (617)
+.+.++|+.+.+-. .++. . .. .+.++. .++++|+.... ...++++|+.+.+... ++.
T Consensus 64 ~~v~viD~~t~~~~~~i~~----------~-~~---p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITG----------F-TS---PRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp TEEEEEETTTCCEEEEEEC----------C-SS---EEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECcccEEEEEcCC----------C-CC---CcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEc
Confidence 56899999887753 3321 1 11 133444 67899998743 2479999999987543 331
Q ss_pred cCCCC-CCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC
Q 007111 91 KGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 169 (617)
Q Consensus 91 ~g~~P-~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~ 169 (617)
+... .......++..++++|+..- . ..+.+.++|+.+++....-..+..| +.++...+..+|+.....
T Consensus 124 -g~~~~~~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 124 -PDMDMESGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp -TTCCTTTCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCB
T ss_pred -CCccccCCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCC
Confidence 1100 00123344457889999841 0 2467999999998865432222222 233333333377664322
Q ss_pred CC-CC----CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 170 KS-KT----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 170 ~~-~~----~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
.. .. .+.+++||+.+.+....... |....-..++.. ++.+|+..+ .+++||+.+.+......
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~ 261 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPF 261 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCS
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEec---CCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeee
Confidence 11 11 36899999999887644332 222222344444 567888754 58999998876422111
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+ ........+.+.. +.+.||+....+-...+.|.+||+. .+
T Consensus 262 ~~----~~~~~p~gi~vdp-~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 262 LE----FRDTKYYGLTVNP-NNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp BC----CCSSCEEEEEECT-TTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred ec----CCCCceEEEEEcC-CCCeEEEEcccccccCCEEEEECCC-CC
Confidence 11 1112233344432 2467888863221124589999998 44
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.012 Score=62.35 Aligned_cols=199 Identities=13% Similarity=0.162 Sum_probs=109.7
Q ss_pred EEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 53 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 53 v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
+.+++..++.|+.+ ..+..||+.+..-...- ........+...++..++.|+.++ .+.+||..
T Consensus 245 ~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~ 307 (445)
T 2ovr_B 245 VQYDGRRVVSGAYD------FMVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVE 307 (445)
T ss_dssp EEECSSCEEEEETT------SCEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEETT
T ss_pred EEECCCEEEEEcCC------CEEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEECC
Confidence 33466667777653 24788888776532221 111122233334777777777644 48899998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 212 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~I 212 (617)
+.+-...- ........+...++. +++.|+.++ .+..||+.++.....-... .........+.+++.+
T Consensus 308 ~~~~~~~~-----~~~~~~v~~~~~~~~-~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~ 374 (445)
T 2ovr_B 308 TGNCIHTL-----TGHQSLTSGMELKDN-ILVSGNADS-----TVKIWDIKTGQCLQTLQGP--NKHQSAVTCLQFNKNF 374 (445)
T ss_dssp TCCEEEEE-----CCCCSCEEEEEEETT-EEEEEETTS-----CEEEEETTTCCEEEEECST--TSCSSCEEEEEECSSE
T ss_pred CCCEEEEE-----cCCcccEEEEEEeCC-EEEEEeCCC-----eEEEEECCCCcEEEEEccC--CCCCCCEEEEEECCCE
Confidence 87644321 111112233445667 677777764 4999999877644332210 1112222334456777
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.|+.. ..+.+||+.+.+....-... ...........+.+ ..++.++++|+.++.....+.+||...+
T Consensus 375 l~s~~~d-----g~v~iwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~--s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 375 VITSSDD-----GTVKLWDLKTGEFIRNLVTL-ESGGSGGVVWRIRA--SNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETT-----SEEEEEETTTCCEEEEEEEC-TTGGGTCEEEEEEE--CSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEeCC-----CeEEEEECCCCceeeeeecc-ccCCCCceEEEEEe--cCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 7777755 35889999887654322101 00111112222333 2357788899988766667899987654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0078 Score=60.55 Aligned_cols=162 Identities=12% Similarity=0.010 Sum_probs=105.4
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
...+...++.+|+-.|..+ .+.+.++|+.+.+-...- +++..-.+..++..+++||+.... .+.+++
T Consensus 45 tqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v 111 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK------NGLGFV 111 (262)
T ss_dssp EEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEEE
T ss_pred cceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee------CCEEEE
Confidence 4566666899999998742 357999999999855443 356666677788899999998542 467999
Q ss_pred EECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEE
Q 007111 129 FDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 206 (617)
Q Consensus 129 yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v 206 (617)
||+.+.+-. +++ .+-.+.+.+.-++. +|+.-|. +.++.+|+.+.+-..-...+..+.+... --+.
T Consensus 112 ~D~~t~~~~~ti~------~~~eG~glt~dg~~-L~~SdGs------~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 112 WNIRNLRQVRSFN------YDGEGWGLTHNDQY-LIMSDGT------PVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EETTTCCEEEEEE------CSSCCCCEEECSSC-EEECCSS------SEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EECccCcEEEEEE------CCCCceEEecCCCE-EEEECCC------CeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 999988754 332 22355566654444 8886552 5699999998765543222111111111 1244
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
..+++||+---. .+++.+.|+.+.+-...-
T Consensus 179 ~~~G~lyan~w~-----~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 179 WVDGEIFANVWQ-----TNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EETTEEEEEETT-----SSEEEEECTTTCBEEEEE
T ss_pred EECCEEEEEEcc-----CCeEEEEECCCCcEEEEE
Confidence 458898864322 357999999998754433
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0066 Score=62.65 Aligned_cols=225 Identities=18% Similarity=0.109 Sum_probs=122.0
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTF 78 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~y 78 (617)
+|+.|+.+ ..+.+||+.+++....-. .. .. -.+++.. +..+|+.|+.+ ..+.+|
T Consensus 4 l~vs~~~d-----~~v~v~d~~~~~~~~~~~----------~~--~~-~~~~~~s~dg~~l~~~~~~d------~~i~v~ 59 (391)
T 1l0q_A 4 AYIANSES-----DNISVIDVTSNKVTATIP----------VG--SN-PMGAVISPDGTKVYVANAHS------NDVSII 59 (391)
T ss_dssp EEEEETTT-----TEEEEEETTTTEEEEEEE----------CS--SS-EEEEEECTTSSEEEEEEGGG------TEEEEE
T ss_pred EEEEcCCC-----CEEEEEECCCCeEEEEee----------cC--CC-cceEEECCCCCEEEEECCCC------CeEEEE
Confidence 35566543 469999998876543322 01 11 1233332 34677777552 369999
Q ss_pred ECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 79 DTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 79 d~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
|+.+.+....-. .+. .-.+++.. +..||+.|.. ...+++||+.+++....-. ....-..++.
T Consensus 60 d~~~~~~~~~~~---~~~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~-----~~~~~~~~~~ 123 (391)
T 1l0q_A 60 DTATNNVIATVP---AGS--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVK-----TGKSPLGLAL 123 (391)
T ss_dssp ETTTTEEEEEEE---CSS--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEE-----CSSSEEEEEE
T ss_pred ECCCCeEEEEEE---CCC--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEe-----CCCCcceEEE
Confidence 998887544331 122 22233332 3456665432 2469999999887654421 1111223333
Q ss_pred E-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECC
Q 007111 157 Y-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
. +++.+|+.++.+ +.+++||+.+++.......+ ..-..++.. +..+|+.++.. ..+++||+.
T Consensus 124 s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~ 188 (391)
T 1l0q_A 124 SPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS-----MSISVIDTV 188 (391)
T ss_dssp CTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT-----TEEEEEETT
T ss_pred CCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC-----CEEEEEECC
Confidence 3 455577777654 36999999988776554432 111233333 44677776543 458999998
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+......... ......+.+. .+...|++.+... ....|.+||+.+.+
T Consensus 189 ~~~~~~~~~~-------~~~~~~~~~~-~~g~~l~~~~~~~--~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 189 TNSVIDTVKV-------EAAPSGIAVN-PEGTKAYVTNVDK--YFNTVSMIDTGTNK 235 (391)
T ss_dssp TTEEEEEEEC-------SSEEEEEEEC-TTSSEEEEEEECS--SCCEEEEEETTTTE
T ss_pred CCeEEEEEec-------CCCccceEEC-CCCCEEEEEecCc--CCCcEEEEECCCCe
Confidence 8765443311 1122333343 2334555554211 13478999987764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.048 Score=57.55 Aligned_cols=187 Identities=15% Similarity=0.150 Sum_probs=101.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
.+..++.|+.+ ..+.+||+.+..-...- ........++..++.+++.|+.++ .+.+||+.+.+
T Consensus 208 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~ 270 (445)
T 2ovr_B 208 HEKRVVSGSRD------ATLRVWDIETGQCLHVL-----MGHVAAVRCVQYDGRRVVSGAYDF------MVKVWDPETET 270 (445)
T ss_dssp ETTEEEEEETT------SEEEEEESSSCCEEEEE-----ECCSSCEEEEEECSSCEEEEETTS------CEEEEEGGGTE
T ss_pred cCCEEEEEeCC------CEEEEEECCCCcEEEEE-----cCCcccEEEEEECCCEEEEEcCCC------EEEEEECCCCc
Confidence 44456666653 36888898876533221 111122233344777777777654 47889988765
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIA 215 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~ 215 (617)
-...- ........++.+++. .++.|+.++ .+..||+.++.....-.. ..........++..++.
T Consensus 271 ~~~~~-----~~~~~~v~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~ 334 (445)
T 2ovr_B 271 CLHTL-----QGHTNRVYSLQFDGI-HVVSGSLDT-----SIRVWDVETGNCIHTLTG-----HQSLTSGMELKDNILVS 334 (445)
T ss_dssp EEEEE-----CCCSSCEEEEEECSS-EEEEEETTS-----CEEEEETTTCCEEEEECC-----CCSCEEEEEEETTEEEE
T ss_pred EeEEe-----cCCCCceEEEEECCC-EEEEEeCCC-----eEEEEECCCCCEEEEEcC-----CcccEEEEEEeCCEEEE
Confidence 43221 111112234445777 677777764 399999988765433221 11112233345556666
Q ss_pred ecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 216 GGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 216 GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
|+..+ .+.+||+.+..-...-..+. .......++.+. +.+++.|+.++ .|.+||+.+.+.
T Consensus 335 ~~~dg-----~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~----~~~l~s~~~dg----~v~iwd~~~~~~ 394 (445)
T 2ovr_B 335 GNADS-----TVKIWDIKTGQCLQTLQGPN---KHQSAVTCLQFN----KNFVITSSDDG----TVKLWDLKTGEF 394 (445)
T ss_dssp EETTS-----CEEEEETTTCCEEEEECSTT---SCSSCEEEEEEC----SSEEEEEETTS----EEEEEETTTCCE
T ss_pred EeCCC-----eEEEEECCCCcEEEEEccCC---CCCCCEEEEEEC----CCEEEEEeCCC----eEEEEECCCCce
Confidence 76543 48899987765433221110 011222333332 34667777653 688999887764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.031 Score=56.35 Aligned_cols=204 Identities=12% Similarity=-0.004 Sum_probs=119.7
Q ss_pred eEEEEEC-CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 50 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 50 hs~v~~g-~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
+.++..+ +.+|+..|... .+.+.++|+.+++-...- +++....+..++..++++|+..- ..+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVW------LKNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence 5666665 79999877422 247999999999854433 24444566677788899999842 3467999
Q ss_pred EECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCc-ceEEE
Q 007111 129 FDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA-GCCGV 206 (617)
Q Consensus 129 yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~-~ha~v 206 (617)
||+.+.+=. .++. + +| .+.+.+. +++.+|+.-| .+.++.+|+.+.+-......+..+.+.. -..+.
T Consensus 91 iD~~t~~v~~~i~~-g-~~---~g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 91 YDRRTLSNIKNFTH-Q-MK---DGWGLAT-DGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EETTTTEEEEEEEC-C-SS---SCCEEEE-CSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCCCcEEEEEEC-C-CC---CeEEEEE-CCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 999987533 3321 2 22 2344444 5554888754 2579999999876554333222122211 12334
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC-------CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS-------SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~-------~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
..++.+|+--.. .+++.+.|+.+.+-...-..+.. ..........+.+. .+.+.+||.|+. .+
T Consensus 159 ~~dg~lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-~~~~~lfVTgk~----~~ 228 (266)
T 2iwa_A 159 YINGEVWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD-QENKRIFVTGKL----WP 228 (266)
T ss_dssp EETTEEEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE-TTTTEEEEEETT----CS
T ss_pred EECCEEEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc-CCCCEEEEECCC----CC
Confidence 448888876432 25799999998764332211100 00011112222332 345789998875 45
Q ss_pred eEEEEECCC
Q 007111 280 QVEVLSIEK 288 (617)
Q Consensus 280 dV~vyd~~~ 288 (617)
.+++.++..
T Consensus 229 ~v~~i~l~~ 237 (266)
T 2iwa_A 229 KLFEIKLHL 237 (266)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 677776644
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.015 Score=59.81 Aligned_cols=217 Identities=13% Similarity=0.073 Sum_probs=117.3
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..+.+||+.+.+....-. . +.. -.+++.. +..||+.|... ..+++||+.++.....-.
T Consensus 54 ~~i~v~d~~~~~~~~~~~----------~--~~~-v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~- 113 (391)
T 1l0q_A 54 NDVSIIDTATNNVIATVP----------A--GSS-PQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVK- 113 (391)
T ss_dssp TEEEEEETTTTEEEEEEE----------C--SSS-EEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-
T ss_pred CeEEEEECCCCeEEEEEE----------C--CCC-ccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEe-
Confidence 468999998877544332 1 111 1233332 44566665431 369999999887544431
Q ss_pred CCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 92 GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
......+++.. +..+|+.++.+ ..+++||+.+.+....-..+. .-..++.. +++.+|+.++.
T Consensus 114 ----~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 114 ----TGKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp ----CSSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETT
T ss_pred ----CCCCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCC
Confidence 11122333333 34677776432 469999999887655422111 11233333 45557777665
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
+ +.++.||+.++........ .....+++.. ++ .+|+.+... ....+++||+.+......... .
T Consensus 179 ~-----~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~---~~~~v~~~d~~~~~~~~~~~~--~ 243 (391)
T 1l0q_A 179 S-----MSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKITARIPV--G 243 (391)
T ss_dssp T-----TEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECS---SCCEEEEEETTTTEEEEEEEC--C
T ss_pred C-----CEEEEEECCCCeEEEEEec-----CCCccceEECCCCCEEEEEecCc---CCCcEEEEECCCCeEEEEEec--C
Confidence 4 4599999988876554432 1111223332 34 455554311 125689999987754332211 1
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.....+.+. .+...||+.++.+ +.|.+||+.+.+
T Consensus 244 -----~~~~~~~~s-~dg~~l~~s~~~d----~~v~v~d~~~~~ 277 (391)
T 1l0q_A 244 -----PDPAGIAVT-PDGKKVYVALSFX----NTVSVIDTATNT 277 (391)
T ss_dssp -----SSEEEEEEC-TTSSEEEEEETTT----TEEEEEETTTTE
T ss_pred -----CCccEEEEc-cCCCEEEEEcCCC----CEEEEEECCCCc
Confidence 122333343 2345677776654 478999998765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.14 Score=52.77 Aligned_cols=218 Identities=16% Similarity=0.201 Sum_probs=116.3
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||..+.+ |..-........ .........+.+..++.||+.... ..++.||..+.+ |+...
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWF----SKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CC----SCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEEccCCceeeeecCccccccc----cccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeC
Confidence 369999997654 865442100000 000122234456678899986432 369999998775 76543
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEcc
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG 167 (617)
. +. ...+.+..++.+|+..+ ...++.||+.+.+ |+.-.. .+....+...+.+..++. +|+ |.
T Consensus 132 ~-~~-----~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~-v~~-g~ 195 (376)
T 3q7m_A 132 A-GE-----ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLD-MPSLSLRGESAPTTAFGA-AVV-GG 195 (376)
T ss_dssp S-SC-----CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECC-C-----CCCCCCEEETTE-EEE-CC
T ss_pred C-Cc-----eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCC-CCceeecCCCCcEEECCE-EEE-Ec
Confidence 1 11 11223455788877432 2469999998875 886421 111111112233344444 554 44
Q ss_pred CCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCC--------cceEEEEECCEEEEEecCCCCCccceEEEEECCCC--
Q 007111 168 SSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPR--------AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-- 235 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~--~W~~~~~~g~~P~~R--------~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~-- 235 (617)
.+ ..++.||+.++ .|+..... |... .....+..++.+|+.+. . ..++.||+.+.
T Consensus 196 ~~-----g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~-----g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 196 DN-----GRVSAVLMEQGQMIWQQRISQ---ATGSTEIDRLSDVDTTPVVVNGVVFALAY-N-----GNLTALDLRSGQI 261 (376)
T ss_dssp TT-----TEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEEECT-T-----SCEEEEETTTCCE
T ss_pred CC-----CEEEEEECCCCcEEEEEeccc---CCCCcccccccccCCCcEEECCEEEEEec-C-----cEEEEEECCCCcE
Confidence 33 35999999765 46654322 1111 11233445888888652 1 35889999766
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.|..-. . .....++. ++.||+.... ..+++||+.+.+
T Consensus 262 ~w~~~~----~------~~~~~~~~---~~~l~~~~~~-----g~l~~~d~~tG~ 298 (376)
T 3q7m_A 262 MWKREL----G------SVNDFIVD---GNRIYLVDQN-----DRVMALTIDGGV 298 (376)
T ss_dssp EEEECC----C------CEEEEEEE---TTEEEEEETT-----CCEEEEETTTCC
T ss_pred EeeccC----C------CCCCceEE---CCEEEEEcCC-----CeEEEEECCCCc
Confidence 477531 1 12222332 3667765432 268999988765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.42 E-value=0.1 Score=51.84 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=111.8
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+|+..+......-.. ....-.+++.. ++.+++.|+.+ ..+.+||+.+..-...-.
T Consensus 46 ~i~iw~~~~~~~~~~~~~------------h~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~--- 104 (312)
T 4ery_A 46 LIKIWGAYDGKFEKTISG------------HKLGISDVAWSSDSNLLVSASDD------KTLKIWDVSSGKCLKTLK--- 104 (312)
T ss_dssp CEEEEETTTCCEEEEECC------------CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE---
T ss_pred eEEEEeCCCcccchhhcc------------CCCceEEEEEcCCCCEEEEECCC------CEEEEEECCCCcEEEEEc---
Confidence 478888877766443220 01111223222 45677777753 268888988775332210
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCC
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSS 169 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~ 169 (617)
... ....++.+ ++.+++.|+.++ .+.+||+.+.+-...- +.....-.++.+ ++. +++.|+.+
T Consensus 105 ~~~--~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~d 170 (312)
T 4ery_A 105 GHS--NYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGS-LIVSSSYD 170 (312)
T ss_dssp CCS--SCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred CCC--CCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCC-EEEEEeCC
Confidence 011 11122222 456777777654 3889999877643321 111111122223 345 77788776
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
+ .+..||+.+.......... ..+. ...++.. ++..++.|+.. ..+.+||+.+..-...... ...
T Consensus 171 ~-----~i~~wd~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~--~~~ 235 (312)
T 4ery_A 171 G-----LCRIWDTASGQCLKTLIDD--DNPP-VSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTG--HKN 235 (312)
T ss_dssp S-----CEEEEETTTCCEEEEECCS--SCCC-EEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECS--SCC
T ss_pred C-----cEEEEECCCCceeeEEecc--CCCc-eEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEe--cCC
Confidence 4 4899999887654432211 1111 1222222 55666666654 3588999987754332211 100
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....-.. .... ..+.+++.||.++ .|.+||+.+.+
T Consensus 236 ~~~~~~~--~~~~-~~~~~l~sg~~dg----~i~vwd~~~~~ 270 (312)
T 4ery_A 236 EKYCIFA--NFSV-TGGKWIVSGSEDN----LVYIWNLQTKE 270 (312)
T ss_dssp SSSCCCE--EEEC-SSSCEEEECCTTS----CEEEEETTTCC
T ss_pred ceEEEEE--EEEe-CCCcEEEEECCCC----EEEEEECCCch
Confidence 0111111 1111 2355677888754 58889987765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.01 Score=62.04 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=117.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.++.+|+.+..+..+... +.+... .+++.. ++.+|+.|+.+ ..+++||+.+.........+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~----------~~~~~~-~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~ 164 (433)
T 3bws_A 102 KLIALDKEGITHRFISRF----------KTGFQP-KSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEK 164 (433)
T ss_dssp CEEECCBTTCSEEEEEEE----------ECSSCB-CCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHH
T ss_pred EEEEECCCCCcceEEEEE----------cCCCCc-eEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCccc
Confidence 577777766655554431 111111 122222 67888877652 248999999887665431100
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
.........++.+ ++.+|+.|+.+ ..+.+||+.+.+....-. .....-..++.. ++..+|+.|+.++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWISE 234 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCCC
Confidence 1111112222333 57888887643 458999998876443211 111111233333 4555667665543
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCC--ccceEEEEECCCCcEEEeecCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKK--RHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~--~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
.+.+||+.++........ ...-.+++.. ++ .+|+.+...... .-..+++||+.+.........+
T Consensus 235 -----~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-- 302 (433)
T 3bws_A 235 -----DISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-- 302 (433)
T ss_dssp -----EEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--
T ss_pred -----cEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--
Confidence 599999988876543221 1222333333 44 444443221111 1247899999877544332100
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.....+.+. .+...+|+.++.+ +.|.+||+.+.+
T Consensus 303 -----~~~~~~~~~-~~g~~l~~~~~~~----~~v~v~d~~~~~ 336 (433)
T 3bws_A 303 -----GNKRHIVSG-NTENKIYVSDMCC----SKIEVYDLKEKK 336 (433)
T ss_dssp -----ECEEEEEEC-SSTTEEEEEETTT----TEEEEEETTTTE
T ss_pred -----CCcceEEEC-CCCCEEEEEecCC----CEEEEEECCCCc
Confidence 112233333 2345677776654 378999988655
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.073 Score=55.46 Aligned_cols=221 Identities=17% Similarity=0.133 Sum_probs=116.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||..+......... .. ...-.+++.. ++.+++.|+.++ .+.+||+.+......-
T Consensus 113 ~~v~lw~~~~~~~~~~~~~----------~~-~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--- 172 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAET----------DE-STYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTM--- 172 (401)
T ss_dssp TEEEEEETTTCCEEEEEEC----------CT-TCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEE---
T ss_pred CeEEEeeCCCCcEeEeeec----------CC-CCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEe---
Confidence 3699999998887655431 10 1111223222 556677776532 5888898877643332
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
........++..++.+++.|+.++ .+.+||+.... -..+. + ....-.+++.. ++. +++.|+.+
T Consensus 173 --~~~~~~v~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~--~---~~~~v~~~~~~~~~~-~l~s~~~d 238 (401)
T 4aez_A 173 --AGHQARVGCLSWNRHVLSSGSRSG------AIHHHDVRIANHQIGTLQ--G---HSSEVCGLAWRSDGL-QLASGGND 238 (401)
T ss_dssp --CCCSSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEE--C---CSSCEEEEEECTTSS-EEEEEETT
T ss_pred --cCCCCceEEEEECCCEEEEEcCCC------CEEEEecccCcceeeEEc--C---CCCCeeEEEEcCCCC-EEEEEeCC
Confidence 111222233344666777777643 58899987433 22221 1 11111122333 445 77888876
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
+ .+..||+.+..-...... ....-.+++.. +..+++.||.+.+ ..+.+||+.+.........
T Consensus 239 ~-----~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~---- 302 (401)
T 4aez_A 239 N-----VVQIWDARSSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA---- 302 (401)
T ss_dssp S-----CEEEEETTCSSEEEEECC----CSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC----
T ss_pred C-----eEEEccCCCCCccEEecC----CcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC----
Confidence 4 499999987654433221 11112233333 4567777753222 4588999987764433211
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
......+.+.. +...+++.+|.. -+.|.+||+.+...
T Consensus 303 ---~~~v~~~~~s~-~~~~l~~~~g~~---dg~i~v~~~~~~~~ 339 (401)
T 4aez_A 303 ---GSQVTSLIWSP-HSKEIMSTHGFP---DNNLSIWSYSSSGL 339 (401)
T ss_dssp ---SSCEEEEEECS-SSSEEEEEECTT---TCEEEEEEEETTEE
T ss_pred ---CCcEEEEEECC-CCCeEEEEeecC---CCcEEEEecCCccc
Confidence 12234444433 335555554532 23688888877543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.036 Score=58.57 Aligned_cols=213 Identities=12% Similarity=0.156 Sum_probs=113.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||..+.+-...-. .... ....+.+++.+++.|+.++ .+.+||..+......-
T Consensus 154 ~i~iwd~~~~~~~~~~~------------~h~~-~v~~l~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~----- 209 (435)
T 1p22_A 154 TIKIWDKNTLECKRILT------------GHTG-SVLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNTL----- 209 (435)
T ss_dssp CEEEEESSSCCEEEEEC------------CCSS-CEEEEECCSSEEEEEETTS------CEEEEESSSCCEEEEE-----
T ss_pred eEEEEeCCCCeEEEEEc------------CCCC-cEEEEEECCCEEEEEcCCC------eEEEEECCCCcEEEEE-----
Confidence 58888887766433221 0011 1233344777788887632 5888898887643322
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~ 174 (617)
........+....+.+++.||.++ .+.+||..+..-..... .+........++.+++. .++.|+.++
T Consensus 210 ~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~l~s~~~dg---- 276 (435)
T 1p22_A 210 IHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDK-YIVSASGDR---- 276 (435)
T ss_dssp CCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETT-EEEEEETTS----
T ss_pred cCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCC-EEEEEeCCC----
Confidence 111222333344556777777654 48889987764221100 01111122234445677 667777654
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcce
Q 007111 175 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGF 254 (617)
Q Consensus 175 n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~ 254 (617)
.+..||+.+..-...... ... ...++.+++..++.|+..+ .+.+||+.+..-...- .. .....
T Consensus 277 -~i~vwd~~~~~~~~~~~~----~~~-~v~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~--~~----h~~~v 339 (435)
T 1p22_A 277 -TIKVWNTSTCEFVRTLNG----HKR-GIACLQYRDRLVVSGSSDN-----TIRLWDIECGACLRVL--EG----HEELV 339 (435)
T ss_dssp -EEEEEETTTCCEEEEEEC----CSS-CEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEEE--CC----CSSCE
T ss_pred -eEEEEECCcCcEEEEEcC----CCC-cEEEEEeCCCEEEEEeCCC-----eEEEEECCCCCEEEEE--eC----CcCcE
Confidence 489999988765433221 111 1233344666777777553 4889999876533321 10 11122
Q ss_pred EEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 255 TLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 255 s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.++.+. +..++.|+.++ .|.+||+.+.
T Consensus 340 ~~~~~~----~~~l~sg~~dg----~i~vwd~~~~ 366 (435)
T 1p22_A 340 RCIRFD----NKRIVSGAYDG----KIKVWDLVAA 366 (435)
T ss_dssp EEEECC----SSEEEEEETTS----CEEEEEHHHH
T ss_pred EEEEec----CCEEEEEeCCC----cEEEEECCCC
Confidence 233332 44677787654 5788887543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.012 Score=59.72 Aligned_cols=224 Identities=10% Similarity=0.076 Sum_probs=111.8
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-C--CEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g--~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
.+.+||+....+..+... ......-.+++.. . +.+++.|+.+. .+.+||+.+..|..+..
T Consensus 34 ~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~- 96 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAV- 96 (379)
T ss_dssp CEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEEETTEEEEEEE-
T ss_pred cEEEEecCCCcceeeeEe----------cCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEcCCCceeEeee-
Confidence 588888876666655431 1111111233332 2 56777777532 48888888888766653
Q ss_pred CCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEECCCCcE-EEeecCCCCCCCCcccEEEEE---------
Q 007111 92 GDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHCTGTGPSPRSNHVAALY--------- 157 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~h~a~~~--------- 157 (617)
+........++.+ + +.+++.|+.++ .+.+||+.+... ......+ ... .-.+++..
T Consensus 97 --~~~~~~~v~~~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~~-~~~--~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 97 --HAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDA-HAI--GVNSASWAPATIEEDGE 165 (379)
T ss_dssp --ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCTTSCCCEEEEEC-CTT--CEEEEEECCCC------
T ss_pred --ecCCCcceEEEEeCCCCCCCEEEEecCCC------cEEEEecCCCCceeeEEecC-CCC--ceEEEEEcCcccccccc
Confidence 2222222222332 2 56777776543 478888877632 1111001 011 11122222
Q ss_pred -----CCcEEEEEccCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE-C---CEEEEEecCCCCCccce
Q 007111 158 -----DDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLC-G---TKWYIAGGGSRKKRHAE 226 (617)
Q Consensus 158 -----~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~~P~~R~~ha~v~~-~---~~IyI~GG~s~~~~~~~ 226 (617)
++. +++.|+.++ .|..||+.+. .|........ ....-.+++.. + +.+++.|+..+ .
T Consensus 166 ~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~ 232 (379)
T 3jrp_A 166 HNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR-----T 232 (379)
T ss_dssp ----CTTC-EEEEEETTS-----CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTS-----C
T ss_pred ccCCCCCC-EEEEEeCCC-----eEEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCC-----E
Confidence 245 778887765 3888887554 3554443211 11112233333 4 67888887654 3
Q ss_pred EEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 227 TLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 227 v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.+||+.+.. +..... . . .........+.+.. ++.++++|+.++ .|.+|++..
T Consensus 233 i~iwd~~~~~~~~~~~~~-~-~-~~~~~~v~~~~~s~--~g~~l~~~~~dg----~i~iw~~~~ 287 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLL-K-E-EKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKENL 287 (379)
T ss_dssp EEEEEESSTTSCCEEEES-S-S-SCCSSCEEEEEECS--SSCCEEEEESSS----SEEEEEEEE
T ss_pred EEEEeCCCCCccceeeee-c-c-ccCCCcEEEEEEcC--CCCEEEEecCCC----cEEEEeCCC
Confidence 7788877652 222111 1 0 01112233344433 244666776653 578888764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.015 Score=58.61 Aligned_cols=157 Identities=10% Similarity=-0.058 Sum_probs=100.7
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEE
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
..++...++.||+..|..+ .+..+|+.+.+-...- ++..-.+..++..+++||+.... .+.+++
T Consensus 57 tqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V 120 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLFT 120 (268)
T ss_dssp EEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEEE
T ss_pred cceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEEE
Confidence 3566677899999998742 3899999988642221 23444566788889999998442 467999
Q ss_pred EECCCCcEE-EeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEE
Q 007111 129 FDLKSLTWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 206 (617)
Q Consensus 129 yD~~t~~W~-~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v 206 (617)
||+.+.+-. +++ .+-.+.+++.-++. ||+.-|. +.++.+|+.+.+-..-...+..+.+... --+.
T Consensus 121 ~D~~Tl~~~~ti~------~~~eGwGLt~Dg~~-L~vSdGs------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 121 WSGMPPQRERTTR------YSGEGWGLCYWNGK-LVRSDGG------TMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EETTTTEEEEEEE------CSSCCCCEEEETTE-EEEECSS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCcCcEEEEEe------CCCceeEEecCCCE-EEEECCC------CEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 999988754 332 22335566655554 8888652 4699999998765543322222222211 1234
Q ss_pred EECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 207 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 207 ~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
..++++|+--- ..+++.+.|+.+.+-..
T Consensus 188 ~~dG~lyanvw-----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 188 CANGVIYANIW-----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp EETTEEEEEET-----TCSEEEEECTTTCBEEE
T ss_pred EeCCEEEEEEC-----CCCeEEEEeCCCCcEEE
Confidence 45888886421 13579999999886443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.12 Score=53.74 Aligned_cols=230 Identities=12% Similarity=0.023 Sum_probs=115.9
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+.+......... ...+...-.+++. -++++|+.|+.+ ..+.+||+.+.+....-.
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~--- 208 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEK-------YKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD--- 208 (433)
T ss_dssp SEEEEETTTCCEEEECCCHH-------HHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE---
T ss_pred eEEEEECCCCeEeeecCccc-------ccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc---
Confidence 59999998887664332100 0001111122222 267888887753 368999998865433221
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
.......+++.. +..+|+.++.+ ..+++||+.+.+....- +....-..++.. +++ .+++++...
T Consensus 209 -~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~-~l~~~~~~~ 275 (433)
T 3bws_A 209 -LTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKT-----DKIGLPRGLLLSKDGK-ELYIAQFSA 275 (433)
T ss_dssp -CSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEC-----CCCSEEEEEEECTTSS-EEEEEEEES
T ss_pred -CCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEe-----cCCCCceEEEEcCCCC-EEEEEECCC
Confidence 111122233333 34666665432 36999999988765431 111112233333 455 444444322
Q ss_pred CCC---CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 171 SKT---LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 171 ~~~---~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
... -..+++||+.+++....... +. ....++.. ++.+|+.++.. ..+.+||+.+.........
T Consensus 276 ~~~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~-- 343 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKSIPV-- 343 (433)
T ss_dssp CTTCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEEEEC--
T ss_pred CccccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEEecC--
Confidence 211 24699999988765544321 11 11122222 34688876654 3689999987654432211
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCC----------CCCeEEEEECCCCcc
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE----------PSNQVEVLSIEKNES 291 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~----------~~~dV~vyd~~~~~W 291 (617)
......+.+.. +...+++.+..... .-..|++||+.+.+.
T Consensus 344 -----~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 344 -----FDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp -----SSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred -----CCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 11223344432 23445544432110 024899999987653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.083 Score=52.37 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=100.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee-EEEEE-CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-TVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~-s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+++.++.|+.+ ..+.+||+.+..+..... +....... +++.. ++.+++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~ 172 (337)
T 1gxr_A 108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHN 172 (337)
T ss_dssp TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeCCC
Confidence 45666677652 268899998887544331 11111111 22222 456677776543 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
.+....- ..... .-.+++.. ++. .++.|+.++ .+..||+.+..-...... +. .-.+++.. ++.
T Consensus 173 ~~~~~~~---~~~~~-~i~~~~~~~~~~-~l~~~~~dg-----~i~~~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~ 237 (337)
T 1gxr_A 173 QTLVRQF---QGHTD-GASCIDISNDGT-KLWTGGLDN-----TVRSWDLREGRQLQQHDF---TS--QIFSLGYCPTGE 237 (337)
T ss_dssp TEEEEEE---CCCSS-CEEEEEECTTSS-EEEEEETTS-----EEEEEETTTTEEEEEEEC---SS--CEEEEEECTTSS
T ss_pred Cceeeee---ecccC-ceEEEEECCCCC-EEEEEecCC-----cEEEEECCCCceEeeecC---CC--ceEEEEECCCCC
Confidence 7654431 11111 11122333 455 667777653 599999988765443322 11 12233333 566
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+++|+..+ .+.+||+.+..-..+.. .......+.+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 238 ~l~~~~~~~-----~i~~~~~~~~~~~~~~~-------~~~~v~~~~~~~--~~~~l~~~~~dg----~i~~~~~~~~~ 298 (337)
T 1gxr_A 238 WLAVGMESS-----NVEVLHVNKPDKYQLHL-------HESCVLSLKFAY--CGKWFVSTGKDN----LLNAWRTPYGA 298 (337)
T ss_dssp EEEEEETTS-----CEEEEETTSSCEEEECC-------CSSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEEcCCC-----cEEEEECCCCCeEEEcC-------CccceeEEEECC--CCCEEEEecCCC----cEEEEECCCCe
Confidence 777776543 48899998765433321 111233333432 234566776543 68889987765
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.077 Score=56.16 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=116.8
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v-~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..++++|.....-..+... ... -.+.+ .-+++.+++++.... ...++++|+.+.+...+.
T Consensus 159 ~~i~i~d~~g~~~~~l~~~------------~~~-v~~~~~Spdg~~la~~s~~~~---~~~i~~~d~~tg~~~~l~--- 219 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS------------PQP-LMSPAWSPDGSKLAYVTFESG---RSALVIQTLANGAVRQVA--- 219 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE------------SSC-EEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEEEE---
T ss_pred ceEEEEcCCCCCCEEEeCC------------CCc-ceeeEEcCCCCEEEEEEecCC---CcEEEEEECCCCcEEEee---
Confidence 5788899876554444321 011 11222 225555666655321 247999999998877665
Q ss_pred CCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
..+. ...+.+.- ++ .|++.+..++ ...++++|+.+.+...+. ..+ . .....+.. +++.|++.+..+
T Consensus 220 ~~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~---~~~-~-~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 220 SFPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVT---DGR-S-NNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp CCSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECC---CCS-S-CEEEEEECTTSSEEEEEECTT
T ss_pred cCCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCc---CCC-C-cccceEECCCCCEEEEEECCC
Confidence 2221 11222222 34 4555554433 257999999998877663 111 1 11122222 455344433222
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
+ ...++.+|+.++....+... .......+.. +++.+++++.... ...++++|+.+.....+.. .
T Consensus 289 g---~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~---~-- 353 (415)
T 2hqs_A 289 G---RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSS---T-- 353 (415)
T ss_dssp S---SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCC---S--
T ss_pred C---CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecC---C--
Confidence 2 24699999988775544321 2222223322 4544444443211 2468999999988766531 1
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
. ....+.+..+ +..+++++.++. ...++++|+....
T Consensus 354 -~--~~~~~~~spd--g~~l~~~s~~~~-~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 354 -F--LDETPSLAPN--GTMVIYSSSQGM-GSVLNLVSTDGRF 389 (415)
T ss_dssp -S--SCEEEEECTT--SSEEEEEEEETT-EEEEEEEETTSCC
T ss_pred -C--CcCCeEEcCC--CCEEEEEEcCCC-ccEEEEEECCCCc
Confidence 1 2333444432 334555554321 3478999987654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.094 Score=51.96 Aligned_cols=213 Identities=12% Similarity=0.072 Sum_probs=108.4
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+.+.++...... ......-.+++.. ++..++.|+.+ ..+.+||+.+......-
T Consensus 119 ~~i~~~d~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~--- 179 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQF--- 179 (337)
T ss_dssp SEEEEEECCCC--EEEEEE----------ECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE---
T ss_pred CcEEEEECCCCCcceeeec----------ccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeee---
Confidence 3688999988775433321 0011111223322 45666677653 24889999887644332
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
...... -.+++.. ++.+++.|+.+ ..+.+||+.+.+-.... ..+.+ -.+++.. ++. ++++|+.++
T Consensus 180 ~~~~~~-i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~---~~~~~--v~~~~~s~~~~-~l~~~~~~~ 246 (337)
T 1gxr_A 180 QGHTDG-ASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQH---DFTSQ--IFSLGYCPTGE-WLAVGMESS 246 (337)
T ss_dssp CCCSSC-EEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE---ECSSC--EEEEEECTTSS-EEEEEETTS
T ss_pred ecccCc-eEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeee---cCCCc--eEEEEECCCCC-EEEEEcCCC
Confidence 111111 1222222 45666777643 35899999887644331 11111 1233333 445 677777654
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 249 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~ 249 (617)
.+..||+.+..-..+... ...-.+++.. ++.+++.|+.. ..+.+||+.+..-.....
T Consensus 247 -----~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~------- 304 (337)
T 1gxr_A 247 -----NVEVLHVNKPDKYQLHLH-----ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSK------- 304 (337)
T ss_dssp -----CEEEEETTSSCEEEECCC-----SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE-------
T ss_pred -----cEEEEECCCCCeEEEcCC-----ccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEec-------
Confidence 499999987764433221 1112233333 56667777654 358899988776543221
Q ss_pred CCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 250 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 250 ~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
.......+.+.. ++.+++.|+.++ .|.+|++
T Consensus 305 ~~~~v~~~~~s~--~~~~l~~~~~dg----~i~iw~~ 335 (337)
T 1gxr_A 305 ESSSVLSCDISV--DDKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp CSSCEEEEEECT--TSCEEEEEETTS----CEEEEEE
T ss_pred CCCcEEEEEECC--CCCEEEEecCCC----eEEEEEE
Confidence 111233333432 244666777654 4566654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.069 Score=53.06 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=105.0
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 174 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~ 174 (617)
++.-+-+.+...++.+|+-.|..+. +.+..+|+.+.+=..-. ++|..-++.+++..+++ ||+....+
T Consensus 18 d~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~-ly~ltw~~----- 84 (243)
T 3mbr_X 18 DTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDR-LIQLTWRN----- 84 (243)
T ss_dssp CTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTE-EEEEESSS-----
T ss_pred CCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCE-EEEEEeeC-----
Confidence 3444555777788999999987654 57999999999865432 45666677778888877 99986554
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE-eecCCCCCCCCCcc
Q 007111 175 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKG 253 (617)
Q Consensus 175 n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~-l~~~~~~~p~~r~~ 253 (617)
+.+++||+.+.+-..--.. +..+.+++..++.+|+.-| + +.++.+|+.+.+-.. +.......+... -
T Consensus 85 ~~v~v~D~~tl~~~~ti~~-----~~~Gwglt~dg~~L~vSdg-s-----~~l~~iDp~t~~~~~~I~V~~~g~~~~~-l 152 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRY-----PGEGWALTSDDSHLYMSDG-T-----AVIRKLDPDTLQQVGSIKVTAGGRPLDN-L 152 (243)
T ss_dssp SEEEEEETTTTEEEEEEEC-----SSCCCEEEECSSCEEEECS-S-----SEEEEECTTTCCEEEEEECEETTEECCC-E
T ss_pred CEEEEEECCcCcEEEEEeC-----CCCceEEeeCCCEEEEECC-C-----CeEEEEeCCCCeEEEEEEEccCCccccc-c
Confidence 5699999988765543332 2345677766788888765 2 569999999876433 322111111111 1
Q ss_pred eEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 254 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 254 ~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
--+..+ +++||+-- + ..++|.+.|+.+.+-
T Consensus 153 NeLe~~----~G~lyanv-w---~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 153 NELEWV----NGELLANV-W---LTSRIARIDPASGKV 182 (243)
T ss_dssp EEEEEE----TTEEEEEE-T---TTTEEEEECTTTCBE
T ss_pred eeeEEe----CCEEEEEE-C---CCCeEEEEECCCCCE
Confidence 112222 25566433 2 246899999988773
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.12 Score=53.65 Aligned_cols=220 Identities=11% Similarity=0.097 Sum_probs=109.9
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||+.+.+....-. .... ....+.+++.+++.|+.+ ..+..||+.+..-.....
T Consensus 157 ~i~iwd~~~~~~~~~~~------------~~~~-~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---- 213 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMA------------GHQA-RVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTL---- 213 (401)
T ss_dssp CEEEEETTTCCEEEEEC------------CCSS-CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEE----
T ss_pred eEEEEECcCCeEEEEec------------CCCC-ceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEE----
Confidence 58889988776433221 0111 122334466677777653 368889987433211111
Q ss_pred CCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEcc-CCC
Q 007111 95 PVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGG-SSK 170 (617)
Q Consensus 95 P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG-~~~ 170 (617)
........+..+ ++.+++.|+.++ .+.+||..+..-...-. . ....-.+++... +..+++.|| ...
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~--~--~~~~v~~~~~~p~~~~ll~~~~gs~d 283 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDN------VVQIWDARSSIPKFTKT--N--HNAAVKAVAWCPWQSNLLATGGGTMD 283 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCSSEEEEEC--C--CSSCCCEEEECTTSTTEEEEECCTTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCC------eEEEccCCCCCccEEec--C--CcceEEEEEECCCCCCEEEEecCCCC
Confidence 111111222222 567777777654 48899998765432210 1 111112333332 334777765 221
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
..+..||..++........ .. .-.+++.. +..+++.+|... ..+.+||+.+..+........
T Consensus 284 ----~~i~i~d~~~~~~~~~~~~---~~--~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~~--- 347 (401)
T 4aez_A 284 ----KQIHFWNAATGARVNTVDA---GS--QVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIPA--- 347 (401)
T ss_dssp ----CEEEEEETTTCCEEEEEEC---SS--CEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEEC---
T ss_pred ----CEEEEEECCCCCEEEEEeC---CC--cEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEEecC---
Confidence 3599999988765544332 11 12233332 344555545433 358888888766655432111
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.......+.+.. ++.+++.||.++ .|.+|++.+.+
T Consensus 348 -h~~~v~~~~~s~--dg~~l~s~~~dg----~i~iw~~~~~~ 382 (401)
T 4aez_A 348 -HDTRVLYSALSP--DGRILSTAASDE----NLKFWRVYDGD 382 (401)
T ss_dssp -CSSCCCEEEECT--TSSEEEEECTTS----EEEEEECCC--
T ss_pred -CCCCEEEEEECC--CCCEEEEEeCCC----cEEEEECCCCc
Confidence 111222233332 344667777653 68899987765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.19 Score=50.51 Aligned_cols=179 Identities=7% Similarity=-0.037 Sum_probs=105.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g 92 (617)
+.+.++|+.+++=...-+ ++ +...+..++..++++|+..-. .+.+++||+.+.+- ..++
T Consensus 44 s~v~~iD~~tg~v~~~i~----------l~-~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v~~~i~--- 103 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHK----------MD-DSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSNIKNFT--- 103 (266)
T ss_dssp CEEEEEETTTCCEEEEEE----------CC-TTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEEEEEEE---
T ss_pred CEEEEEECCCCCEEEEEe----------cC-CCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcEEEEEE---
Confidence 679999999887543222 11 122356677789999999643 24799999987753 2333
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEE-EeecCCCCCCCCc-ccEEEEECCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRS-NHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~-~h~a~~~~~~~LyV~GG~~~ 170 (617)
.+ ...+..++..++++|+.-| .+.++.+|+.+++-. .+.+ +..+.+.. -..+...++. +|+--..
T Consensus 104 -~g-~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele~~dg~-lyvn~~~-- 170 (266)
T 2iwa_A 104 -HQ-MKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELEYINGE-VWANIWQ-- 170 (266)
T ss_dssp -CC-SSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTE-EEEEETT--
T ss_pred -CC-CCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEE-CCCCcccccceeEEEECCE-EEEecCC--
Confidence 12 1234556666778998632 467999999997743 3322 22222211 1133344665 8766433
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCC---------CCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGF---------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~---------~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.+.|.++|+.+++-......+. .+..-.-.+++.. ++++||.|+.. +.++..++.
T Consensus 171 ---~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~-----~~v~~i~l~ 236 (266)
T 2iwa_A 171 ---TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW-----PKLFEIKLH 236 (266)
T ss_dssp ---SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC-----SEEEEEEEE
T ss_pred ---CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC-----CeEEEEEEe
Confidence 3579999999987554433210 0111112344444 56899998865 346666653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.053 Score=54.45 Aligned_cols=168 Identities=15% Similarity=0.082 Sum_probs=102.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEE-EeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g 92 (617)
+.+.++|+.+++=..--. ++ +..++.+++..+++||+.... .+.+++||+.+.+-. .++
T Consensus 65 S~v~~vD~~Tgkv~~~~~----------l~-~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t~~~~~ti~--- 124 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIE----------LG-KRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRNLRQVRSFN--- 124 (262)
T ss_dssp EEEEEECTTTCCEEEEEE----------CC-TTCCEEEEEEETTEEEEEESS------SSEEEEEETTTCCEEEEEE---
T ss_pred ceEEEEECCCCcEEEEEe----------cC-CccceeEEEEeCCEEEEEEee------CCEEEEEECccCcEEEEEE---
Confidence 578999999987543332 11 233456788889999999653 247999999887643 333
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEE-EeecC-CCCCCCCcccEEEEECCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~-g~~P~~R~~h~a~~~~~~~LyV~GG~~~ 170 (617)
.+-.+.+++..++.+|+.-| .+.++.+|+.+.+-. .+.+. ...|...-. .+...+++ ||+-- +.
T Consensus 125 ---~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN-ELe~~~G~-lyan~-w~- 190 (262)
T 3nol_A 125 ---YDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPELN-ELEWVDGE-IFANV-WQ- 190 (262)
T ss_dssp ---CSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCCEE-EEEEETTE-EEEEE-TT-
T ss_pred ---CCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccccc-eeEEECCE-EEEEE-cc-
Confidence 22366677777788888643 357999999998743 33321 111211111 23445666 77532 22
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCC--------CCCCcceEEEEE--CCEEEEEecC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFH--------PSPRAGCCGVLC--GTKWYIAGGG 218 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~--------P~~R~~ha~v~~--~~~IyI~GG~ 218 (617)
.+.|.++|+.+++-......+.. +..-.-.+++.. .+++||.|-.
T Consensus 191 ---~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 ---TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp ---SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ---CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 36899999999887665443211 111122345554 5789998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.96 E-value=0.27 Score=48.72 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=79.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+. .+.+||+.+..-...- +........+.+ ++.+++.|+.++ .+.+||..+
T Consensus 118 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~ 180 (312)
T 4ery_A 118 QSNLIVSGSFDE------SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTAS 180 (312)
T ss_dssp SSSEEEEEETTS------CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Confidence 456677777532 4888998877533221 111112222222 456777777644 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTK 211 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~-~~~~ 211 (617)
.+....-.... .+.. ..++.. ++. .++.|+.++ .+..||..+......... ............. .++.
T Consensus 181 ~~~~~~~~~~~--~~~~-~~~~~~~~~~-~l~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 181 GQCLKTLIDDD--NPPV-SFVKFSPNGK-YILAATLDN-----TLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp CCEEEEECCSS--CCCE-EEEEECTTSS-EEEEEETTT-----EEEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSSC
T ss_pred CceeeEEeccC--CCce-EEEEECCCCC-EEEEEcCCC-----eEEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCCc
Confidence 76543211111 1111 122222 445 666676653 599999988765443221 1111111112222 3566
Q ss_pred EEEEecCCCCCccceEEEEECCCCcE
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
+++.|+..+ .+.+||+.+..-
T Consensus 251 ~l~sg~~dg-----~i~vwd~~~~~~ 271 (312)
T 4ery_A 251 WIVSGSEDN-----LVYIWNLQTKEI 271 (312)
T ss_dssp EEEECCTTS-----CEEEEETTTCCE
T ss_pred EEEEECCCC-----EEEEEECCCchh
Confidence 777776553 488999887653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.091 Score=60.40 Aligned_cols=248 Identities=7% Similarity=-0.064 Sum_probs=128.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+..+..... + ...+...-++++.. ++.||| |.. ...+++||+.+++++..... .
T Consensus 384 Gl~~~~~~~~~~~~~~~-----~----~~~~~~~v~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~~~~~~~~~-~ 446 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKE-----N----RELLSNSVLCSLKDSEGNLWF-GTY------LGNISYYNTRLKKFQIIELE-K 446 (781)
T ss_dssp CEEEEETTEEEEECC--------------CCCSBEEEEEECTTSCEEE-EET------TEEEEEECSSSCEEEECCST-T
T ss_pred cEEEEECCCCeEEEccC-----C----CCCCCcceEEEEECCCCCEEE-Eec------cCCEEEEcCCCCcEEEeccC-C
Confidence 47788887766655421 0 11222223455554 567776 432 13699999999999887531 1
Q ss_pred CCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCC--CCCCCCcccEEEEECCcEEEEEccCCC
Q 007111 94 IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 94 ~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g--~~P~~R~~h~a~~~~~~~LyV~GG~~~ 170 (617)
++. ..-.+++.. ++.||+-. . .-+++||+.+.+|....... .++... -.+++.-.+..|+|. ....
T Consensus 447 ~~~-~~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g~lWig-t~~~ 515 (781)
T 3v9f_A 447 NEL-LDVRVFYEDKNKKIWIGT-H-------AGVFVIDLASKKVIHHYDTSNSQLLENF-VRSIAQDSEGRFWIG-TFGG 515 (781)
T ss_dssp TCC-CCEEEEEECTTSEEEEEE-T-------TEEEEEESSSSSCCEEECTTTSSCSCSC-EEEEEECTTCCEEEE-ESSS
T ss_pred CCC-CeEEEEEECCCCCEEEEE-C-------CceEEEeCCCCeEEecccCcccccccce-eEEEEEcCCCCEEEE-EcCC
Confidence 111 122233333 46777742 1 35899999999887764211 111111 112222223336553 3322
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceE-EEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET-LIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v-~~yDl~~~~W~~l~~~~~~~p 248 (617)
.+++||+.++.|..+......|... -.+++.. ++.||+... . -+ ++||+.+.++....... ..+
T Consensus 516 -----Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-~------Glv~~~d~~~~~~~~~~~~~-gl~ 581 (781)
T 3v9f_A 516 -----GVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-E------GLVCFPSARNFDYQVFQRKE-GLP 581 (781)
T ss_dssp -----CEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET-T------EEEEESCTTTCCCEEECGGG-TCS
T ss_pred -----CEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC-C------CceEEECCCCCcEEEccccC-CCC
Confidence 2999999999998876432222222 1233332 567777543 1 26 88999888877764311 111
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc----------ccc-cccCccCCceeeeccCCC
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM----------GRR-STPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~----------~w~-~~~~~~~~~v~vfGG~~~ 314 (617)
...-. +++.. .++.|++.+. . -+.+|++.+.++.. .+. .+.....+..++|||..+
T Consensus 582 -~~~i~-~i~~d--~~g~lW~~t~-~-----Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 582 -NTHIR-AISED--KNGNIWASTN-T-----GISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING 648 (781)
T ss_dssp -CCCCC-EEEEC--SSSCEEEECS-S-----CEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE
T ss_pred -CceEE-EEEEC--CCCCEEEEcC-C-----ceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCc
Confidence 11112 22332 2456776542 2 47788887665421 111 112213456688888744
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.091 Score=55.38 Aligned_cols=189 Identities=12% Similarity=0.196 Sum_probs=105.3
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++..++.|+.+ ..+.+||..+..-...- ........+...++.+++.|+.++ .+.+||.
T Consensus 138 ~~~~d~~~l~~g~~d------g~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~ 200 (435)
T 1p22_A 138 CLQYDDQKIVSGLRD------NTIKIWDKNTLECKRIL-----TGHTGSVLCLQYDERVIITGSSDS------TVRVWDV 200 (435)
T ss_dssp EEECCSSEEEEEESS------SCEEEEESSSCCEEEEE-----CCCSSCEEEEECCSSEEEEEETTS------CEEEEES
T ss_pred EEEECCCEEEEEeCC------CeEEEEeCCCCeEEEEE-----cCCCCcEEEEEECCCEEEEEcCCC------eEEEEEC
Confidence 445577778888763 25888898877643332 111222334444778888887654 3889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe-ecCCCCCCCCcceEEEEECC
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~-~~~g~~P~~R~~ha~v~~~~ 210 (617)
.+.+....- ......-.++.+.+. .++.|+.++ .+..||+.+..-... ... .........+.+++
T Consensus 201 ~~~~~~~~~-----~~h~~~v~~l~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 201 NTGEMLNTL-----IHHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMASPTDITLRRVL---VGHRAAVNVVDFDD 266 (435)
T ss_dssp SSCCEEEEE-----CCCCSCEEEEECCTT-EEEEEETTS-----CEEEEECSSSSCCEEEEEE---CCCSSCEEEEEEET
T ss_pred CCCcEEEEE-----cCCCCcEEEEEEcCC-EEEEeeCCC-----cEEEEeCCCCCCceeeeEe---cCCCCcEEEEEeCC
Confidence 887654331 111122234445666 777888765 489999876543211 111 01111222333456
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
..++.|+.. ..+.+||+.+..-...... ......++... +.+++.|+.++ .|.+||+.+.+
T Consensus 267 ~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~----~~~l~~g~~dg----~i~iwd~~~~~ 327 (435)
T 1p22_A 267 KYIVSASGD-----RTIKVWNTSTCEFVRTLNG------HKRGIACLQYR----DRLVVSGSSDN----TIRLWDIECGA 327 (435)
T ss_dssp TEEEEEETT-----SEEEEEETTTCCEEEEEEC------CSSCEEEEEEE----TTEEEEEETTS----CEEEEETTTCC
T ss_pred CEEEEEeCC-----CeEEEEECCcCcEEEEEcC------CCCcEEEEEeC----CCEEEEEeCCC----eEEEEECCCCC
Confidence 666666654 3588999887654332210 11122333333 34677777654 58899988764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.14 Score=49.40 Aligned_cols=229 Identities=11% Similarity=0.061 Sum_probs=119.1
Q ss_pred ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEcccCCCCCCceEEEEEECCC-CcEEEee
Q 007111 12 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVE 89 (617)
Q Consensus 12 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v-~~g~~lyV~GG~~~~~~~~~~v~~yd~~t-~~W~~~~ 89 (617)
.-..+++||+.+.....+... +.. -.+++ .-+++.+++++. ..++++|+.+ .....+.
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~------------~~~-v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~ 79 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT------------PEL-FEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVD 79 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE------------SSC-CEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECC
T ss_pred cceeEEEEeCCCCceeeeccC------------Ccc-eEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEec
Confidence 345799999999887655431 111 12222 225555666542 2699999998 7766554
Q ss_pred ccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEcc
Q 007111 90 AKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGG 167 (617)
Q Consensus 90 ~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG 167 (617)
. .+. .........-++..+++++.... ....+|.++..+.....+.. ... ....+.. +++.|++.++
T Consensus 80 ~---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~----~~~--~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 80 T---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK----NLP--SYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp C---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS----SSS--EEEEEECTTSSEEEEEEE
T ss_pred c---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec----CCC--ccceEECCCCCEEEEEEC
Confidence 1 121 11122222235566666664333 24679999998877665531 111 2222333 4554555554
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
.++. -.+|.+|..+.....+... + .. ...++.. ++. +++.+...+ ...+|.+++.......+...
T Consensus 149 ~~~~---~~l~~~~~~~~~~~~~~~~---~-~~-~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~-- 215 (297)
T 2ojh_A 149 RDQV---FDIYSMDIDSGVETRLTHG---E-GR-NDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDS-- 215 (297)
T ss_dssp ETTE---EEEEEEETTTCCEEECCCS---S-SC-EEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCC--
T ss_pred CCCc---eEEEEEECCCCcceEcccC---C-Cc-cccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecC--
Confidence 4322 3588888887777655432 1 11 1222332 444 444443222 35688888877776665311
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCC-------CCCeEEEEECCCCcc
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-------PSNQVEVLSIEKNES 291 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-------~~~dV~vyd~~~~~W 291 (617)
......+.+.. +...| ++++.++. ....++++|+.+.+.
T Consensus 216 -----~~~~~~~~~s~-dg~~l-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 216 -----AYGDWFPHPSP-SGDKV-VFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp -----SEEEEEEEECT-TSSEE-EEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred -----CcccCCeEECC-CCCEE-EEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 11223333432 23334 44443221 124689999887654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.28 Score=49.68 Aligned_cols=189 Identities=13% Similarity=0.052 Sum_probs=98.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+++.|+.+ ..+.++|+.+..-...-..+ +. ........-++.+++.|+.+ ..+.+||..+..
T Consensus 91 ~~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~~--~~-~~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~ 155 (321)
T 3ow8_A 91 TLPIAASSSLD------AHIRLWDLENGKQIKSIDAG--PV-DAWTLAFSPDSQYLATGTHV------GKVNIFGVESGK 155 (321)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEEECC--TT-CCCCEEECTTSSEEEEECTT------SEEEEEETTTCS
T ss_pred CCCEEEEEeCC------CcEEEEECCCCCEEEEEeCC--Cc-cEEEEEECCCCCEEEEEcCC------CcEEEEEcCCCc
Confidence 34566666653 26888898887643322111 11 11112222345667777643 357889988776
Q ss_pred EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
-...-. . ....-.+++.. +++ +++.|+.++ .|..||+.+++-...-.. ...+ -.+++.. ++.++
T Consensus 156 ~~~~~~-~---~~~~v~~~~~spdg~-~lasg~~dg-----~i~iwd~~~~~~~~~~~~--h~~~--v~~l~~spd~~~l 221 (321)
T 3ow8_A 156 KEYSLD-T---RGKFILSIAYSPDGK-YLASGAIDG-----IINIFDIATGKLLHTLEG--HAMP--IRSLTFSPDSQLL 221 (321)
T ss_dssp EEEEEE-C---SSSCEEEEEECTTSS-EEEEEETTS-----CEEEEETTTTEEEEEECC--CSSC--CCEEEECTTSCEE
T ss_pred eeEEec-C---CCceEEEEEECCCCC-EEEEEcCCC-----eEEEEECCCCcEEEEEcc--cCCc--eeEEEEcCCCCEE
Confidence 432210 0 11111223333 445 777787764 489999988765432221 1111 1233333 56777
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.|+..+ .+.+||+.+....... .. .......+.+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 222 ~s~s~dg-----~i~iwd~~~~~~~~~~--~~----h~~~v~~~~~sp--~~~~l~s~s~D~----~v~iwd~~~~~ 281 (321)
T 3ow8_A 222 VTASDDG-----YIKIYDVQHANLAGTL--SG----HASWVLNVAFCP--DDTHFVSSSSDK----SVKVWDVGTRT 281 (321)
T ss_dssp EEECTTS-----CEEEEETTTCCEEEEE--CC----CSSCEEEEEECT--TSSEEEEEETTS----CEEEEETTTTE
T ss_pred EEEcCCC-----eEEEEECCCcceeEEE--cC----CCCceEEEEECC--CCCEEEEEeCCC----cEEEEeCCCCE
Confidence 7777553 4889998876544322 10 111223334432 234667777654 58888887655
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.82 E-value=0.12 Score=52.30 Aligned_cols=225 Identities=11% Similarity=0.017 Sum_probs=110.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+.+..|..+... ......-.+++.. ++.+++.|+.+ ..+.+||+.+..+.....
T Consensus 30 ~~v~i~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~-- 91 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHEL----------KEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLV-- 91 (372)
T ss_dssp SEEEEEEEETTEEEEEEEE----------ECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEE--
T ss_pred CEEEEEeCCCCcEEeeeee----------cCCCCcccEEEEeCCCCEEEEEcCC------CeEEEEECCCCeeeeeEE--
Confidence 4699999998876655441 1111111233333 56666777653 247888888887765542
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 93 DIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 93 ~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
+........++.+ ++.+++.|+.++ .+.+||..+.. |...... ..+....-.+++.. ++. +++.|+.
T Consensus 92 -~~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~~~~~ 162 (372)
T 1k8k_C 92 -ILRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSV-LLAAGSC 162 (372)
T ss_dssp -CCCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred -eecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCC-EEEEEcC
Confidence 1111222222222 456777777543 36666666544 4322110 11111111233333 445 7777776
Q ss_pred CCCCCCCeEEEEECC------------------CCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEE
Q 007111 169 SKSKTLNDLYSLDFE------------------TMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 229 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~------------------t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~ 229 (617)
++ .+..||+. +..-. .... .....-.+++.. ++..++.|+.. ..+.+
T Consensus 163 dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i 228 (372)
T 1k8k_C 163 DF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELM--FESS--SSCGWVHGVCFSANGSRVAWVSHD-----STVCL 228 (372)
T ss_dssp TS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEE--EECC--CCSSCEEEEEECSSSSEEEEEETT-----TEEEE
T ss_pred CC-----CEEEEEcccccccccccccccccccchhhhe--EecC--CCCCeEEEEEECCCCCEEEEEeCC-----CEEEE
Confidence 64 48889854 22211 1110 111112233332 55566666644 35889
Q ss_pred EECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC--Cccc
Q 007111 230 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK--NESS 292 (617)
Q Consensus 230 yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~--~~W~ 292 (617)
||+.+..-...-.. .......+.+.. ++.+++.| .++ .|.+|++.. .+|.
T Consensus 229 ~d~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~-~d~----~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 229 ADADKKMAVATLAS------ETLPLLAVTFIT--ESSLVAAG-HDC----FPVLFTYDSAAGKLS 280 (372)
T ss_dssp EEGGGTTEEEEEEC------SSCCEEEEEEEE--TTEEEEEE-TTS----SCEEEEEETTTTEEE
T ss_pred EECCCCceeEEEcc------CCCCeEEEEEec--CCCEEEEE-eCC----eEEEEEccCcCceEE
Confidence 99877654332211 111233333432 24555555 433 467778777 6663
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.053 Score=54.78 Aligned_cols=194 Identities=11% Similarity=0.110 Sum_probs=101.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++.|+.+. .+.+||.....+..+.. +........++.+ + +.+++.|+.++ .+.+||+
T Consensus 22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~v~iwd~ 86 (379)
T 3jrp_A 22 YGKRLATCSSDK------TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 86 (379)
T ss_dssp SSSEEEEEETTS------CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEECCC------cEEEEecCCCcceeeeE---ecCCCCcEEEEEeCCCCCCCEEEEeccCC------EEEEEEc
Confidence 456666776532 47777776666665542 2222222223333 2 57777777654 4889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEE-C---CcEEEEEccCCCCCCCCeEEEEECCCCcEE-EeecCCCCCCCCcceEEE
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALY-D---DKNLLIFGGSSKSKTLNDLYSLDFETMIWT-RIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~-~---~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~-~~~~~g~~P~~R~~ha~v 206 (617)
.+..|..+.. +........++.+ . +. +++.|+.++ .+..||+.+.... ..... .....-.+++
T Consensus 87 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~---~~~~~v~~~~ 154 (379)
T 3jrp_A 87 ENGRWSQIAV---HAVHSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIID---AHAIGVNSAS 154 (379)
T ss_dssp ETTEEEEEEE---ECCCSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCTTSCCCEEEEE---CCTTCEEEEE
T ss_pred CCCceeEeee---ecCCCcceEEEEeCCCCCCC-EEEEecCCC-----cEEEEecCCCCceeeEEec---CCCCceEEEE
Confidence 9998876642 1211112223333 2 45 777777764 4889998766321 11111 1111112223
Q ss_pred EE--------------CCEEEEEecCCCCCccceEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEeecC-CcEEEE
Q 007111 207 LC--------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVA 269 (617)
Q Consensus 207 ~~--------------~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~~l~~~~~~~p~~r~~~s~v~v~~~~-~~~L~I 269 (617)
.. ++..++.|+..+ .+.+||+.+. .|..+..... .......+.+...+ .+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG----HSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECC----CSSCEEEEEECCCCSSSEEEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEec----ccCcEeEEEECCCCCCCCeEE
Confidence 22 367777877654 3777777543 3544432111 11223333443221 056778
Q ss_pred EcCCCCCCCCeEEEEECCCC
Q 007111 270 FGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 270 ~GG~~~~~~~dV~vyd~~~~ 289 (617)
.|+.++ .|.+||+.+.
T Consensus 226 s~~~dg----~i~iwd~~~~ 241 (379)
T 3jrp_A 226 SVSQDR----TCIIWTQDNE 241 (379)
T ss_dssp EEETTS----CEEEEEESST
T ss_pred EEeCCC----EEEEEeCCCC
Confidence 888764 4788887765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.51 Score=47.11 Aligned_cols=229 Identities=14% Similarity=0.058 Sum_probs=117.5
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEE-Eeecc
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAK 91 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~ 91 (617)
...++++|+.+.+....-.. ...+ .+.+....++.+|+.++.. ..+++||+.+.+-. .++..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~----------~~~~-~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~ 130 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHN----------DLKP-FGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVLD 130 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEE----------SSCC-CSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEESC
T ss_pred CccEEEEcCCCCeEEEEEec----------CCCc-ceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEecC
Confidence 34689999888764333221 0011 1122222245688876542 37999999887743 33321
Q ss_pred CC-CC---CCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEE
Q 007111 92 GD-IP---VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 164 (617)
Q Consensus 92 g~-~P---~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV 164 (617)
.. .| .+...+.++.. ++.+|+.+... ...+++||+.+.+-...-. . ....-+.++.. +++.+|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~ 201 (353)
T 3vgz_A 131 DRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYT 201 (353)
T ss_dssp CCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEE
T ss_pred CCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEE
Confidence 10 00 01112333333 35677765322 2459999998876443321 0 11111233333 5565666
Q ss_pred EccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 165 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 165 ~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
... + +.+++||+.+++-......+..........++.. ++.+|+.+... ..+++||+.+.+......
T Consensus 202 ~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 202 TNA-D-----GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA-----AEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp ECT-T-----SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-----SEEEEEETTTCCEEEEEE
T ss_pred EcC-C-----CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEE
Confidence 543 2 4689999988765544332211111222233333 45677765332 469999998876544332
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.+ .+ .+ +.+. .+...+|+.+..+ +.|.+||+.+.+.
T Consensus 271 ~~----~~---~~-~~~s-~dg~~l~v~~~~~----~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 271 AP----ES---LA-VLFN-PARNEAYVTHRQA----GKVSVIDAKSYKV 306 (353)
T ss_dssp CS----SC---CC-EEEE-TTTTEEEEEETTT----TEEEEEETTTTEE
T ss_pred cC----CC---ce-EEEC-CCCCEEEEEECCC----CeEEEEECCCCeE
Confidence 11 11 12 2333 2345677766433 4789999887663
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.78 E-value=0.3 Score=49.14 Aligned_cols=69 Identities=9% Similarity=0.014 Sum_probs=38.7
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCC--
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-- 234 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-- 234 (617)
++. +++.|+.++ .+..||+.+......-.. ... .-.+++.. ++.+++.| ..+ .+.+||+..
T Consensus 213 ~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~l~~~-~d~-----~i~i~~~~~~~ 276 (372)
T 1k8k_C 213 NGS-RVAWVSHDS-----TVCLADADKKMAVATLAS---ETL-PLLAVTFITESSLVAAG-HDC-----FPVLFTYDSAA 276 (372)
T ss_dssp SSS-EEEEEETTT-----EEEEEEGGGTTEEEEEEC---SSC-CEEEEEEEETTEEEEEE-TTS-----SCEEEEEETTT
T ss_pred CCC-EEEEEeCCC-----EEEEEECCCCceeEEEcc---CCC-CeEEEEEecCCCEEEEE-eCC-----eEEEEEccCcC
Confidence 445 667777653 499999987765433321 111 11233333 66655555 332 366777776
Q ss_pred CcEEEeec
Q 007111 235 GEWSVAIT 242 (617)
Q Consensus 235 ~~W~~l~~ 242 (617)
..|..+..
T Consensus 277 ~~~~~~~~ 284 (372)
T 1k8k_C 277 GKLSFGGR 284 (372)
T ss_dssp TEEEECCC
T ss_pred ceEEEeec
Confidence 88877643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.65 Score=48.79 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=79.4
Q ss_pred ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 106 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 106 ~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
.++.+++.|+.++ .+.+||..+.+-...- ...... -.+++.. ++. .++.|+.++. +..||+.+
T Consensus 278 ~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~~-v~~~~~~~~~~-~l~sg~~dg~-----i~vwd~~~ 341 (464)
T 3v7d_B 278 GHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTDR-IYSTIYDHERK-RCISASMDTT-----IRIWDLEN 341 (464)
T ss_dssp EETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSC-EEEEEEETTTT-EEEEEETTSC-----EEEEETTT
T ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCCC-EEEEEEcCCCC-EEEEEeCCCc-----EEEEECCC
Confidence 3455666776544 4899999877644331 111111 1233333 445 6777777643 99999988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCC
Q 007111 185 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 264 (617)
Q Consensus 185 ~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~ 264 (617)
++-...-.. .......+.+++..++.|+..+ .+.+||+.+..-...... . .....+.+...
T Consensus 342 ~~~~~~~~~-----h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~------~-~~~~~~~~~~~-- 402 (464)
T 3v7d_B 342 GELMYTLQG-----HTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHH------T-NLSAITTFYVS-- 402 (464)
T ss_dssp TEEEEEECC-----CSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEEC------T-TCCCEEEEEEC--
T ss_pred CcEEEEEeC-----CCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecC------C-CCccEEEEEeC--
Confidence 764433221 1112233445666777777553 488999987653322210 1 11122233322
Q ss_pred cEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 265 DFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 265 ~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
+.+++.|+ + +.|.+||+.+.+-
T Consensus 403 ~~~l~~~~-d----g~i~iwd~~~g~~ 424 (464)
T 3v7d_B 403 DNILVSGS-E----NQFNIYNLRSGKL 424 (464)
T ss_dssp SSEEEEEE-T----TEEEEEETTTCCE
T ss_pred CCEEEEec-C----CeEEEEECCCCcE
Confidence 34666666 3 3799999988763
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.13 Score=59.05 Aligned_cols=225 Identities=8% Similarity=-0.038 Sum_probs=123.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.++...... ..+...-.+++.. ++.||+-.. ..+++||+.+..|.......
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~----------~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELE----------KNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp EEEEEECSSSCEEEECCST----------TTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTT
T ss_pred CCEEEEcCCCCcEEEeccC----------CCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCc
Confidence 3578888888888776531 1112222445444 467776432 25999999999887775321
Q ss_pred C--CCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC
Q 007111 93 D--IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 169 (617)
Q Consensus 93 ~--~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~ 169 (617)
. ++... -.+++.. ++.||+-. . . .-+++||+.+.+|+.......+|.... .+.+.-.+..|++... .
T Consensus 489 ~~~~~~~~-i~~i~~d~~g~lWigt-~-~-----~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-~ 558 (781)
T 3v9f_A 489 NSQLLENF-VRSIAQDSEGRFWIGT-F-G-----GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-E 558 (781)
T ss_dssp TSSCSCSC-EEEEEECTTCCEEEEE-S-S-----SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-T
T ss_pred ccccccce-eEEEEEcCCCCEEEEE-c-C-----CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-C
Confidence 1 11111 1222222 45777642 2 1 238999999999988753223332221 1222212333666432 2
Q ss_pred CCCCCCeE-EEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 170 KSKTLNDL-YSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 170 ~~~~~n~v-~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
.+ ++||+.++++..+....-.|.... .+++.. ++.||+.+. .-+.+||+.+..+....... ..
T Consensus 559 ------Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~d-Gl 623 (781)
T 3v9f_A 559 ------GLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSN-NI 623 (781)
T ss_dssp ------EEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGG-TC
T ss_pred ------CceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccC-Cc
Confidence 36 999999998887754322333222 344444 577887653 23889999999888765322 11
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
+.......++... .++.|| |||.+ -+.+|++..-
T Consensus 624 ~~~~f~~~~~~~~--~~G~l~-~g~~~-----Gl~~f~p~~~ 657 (781)
T 3v9f_A 624 PQGSFISGCVTKD--HNGLIY-FGSIN-----GLCFFNPDIA 657 (781)
T ss_dssp CSSCEEEEEEEEC--TTSCEE-EEETT-----EEEEECSCCG
T ss_pred cccccccCceEEC--CCCEEE-EECCC-----ceEEEChhhc
Confidence 2222222333333 234454 67764 4778888653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.46 Score=47.98 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=95.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++..++.|+.+ ..+.+||..+..-...-. .. ...-.+++. -++.+++.|+.++ .+.+||+.+.
T Consensus 133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~---~~-~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~ 196 (321)
T 3ow8_A 133 DSQYLATGTHV------GKVNIFGVESGKKEYSLD---TR-GKFILSIAYSPDGKYLASGAIDG------IINIFDIATG 196 (321)
T ss_dssp TSSEEEEECTT------SEEEEEETTTCSEEEEEE---CS-SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTT
T ss_pred CCCEEEEEcCC------CcEEEEEcCCCceeEEec---CC-CceEEEEEECCCCCEEEEEcCCC------eEEEEECCCC
Confidence 55666777652 258888887765332210 01 111112222 2567777777654 4889999887
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
+-...- .+. ..+ -.+++...+..+++.|+.++. |.+||+.+......-.. ....-.+++.. ++..+
T Consensus 197 ~~~~~~-~~h-~~~--v~~l~~spd~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~----h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 197 KLLHTL-EGH-AMP--IRSLTFSPDSQLLVTASDDGY-----IKIYDVQHANLAGTLSG----HASWVLNVAFCPDDTHF 263 (321)
T ss_dssp EEEEEE-CCC-SSC--CCEEEECTTSCEEEEECTTSC-----EEEEETTTCCEEEEECC----CSSCEEEEEECTTSSEE
T ss_pred cEEEEE-ccc-CCc--eeEEEEcCCCCEEEEEcCCCe-----EEEEECCCcceeEEEcC----CCCceEEEEECCCCCEE
Confidence 643321 111 111 113333333337788877643 89999987765433221 11111223333 56677
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
+.|+..+ .+.+||+.+..-...- . ........+.+.. ++..++.||.++ .|.+||.
T Consensus 264 ~s~s~D~-----~v~iwd~~~~~~~~~~--~----~h~~~v~~v~~s~--~g~~l~s~~~d~----~i~vwd~ 319 (321)
T 3ow8_A 264 VSSSSDK-----SVKVWDVGTRTCVHTF--F----DHQDQVWGVKYNG--NGSKIVSVGDDQ----EIHIYDC 319 (321)
T ss_dssp EEEETTS-----CEEEEETTTTEEEEEE--C----CCSSCEEEEEECT--TSSEEEEEETTC----CEEEEEC
T ss_pred EEEeCCC-----cEEEEeCCCCEEEEEE--c----CCCCcEEEEEECC--CCCEEEEEeCCC----eEEEEeC
Confidence 7777553 4888998876543321 1 0112233344432 234566777654 4666764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.67 Score=47.52 Aligned_cols=174 Identities=15% Similarity=0.158 Sum_probs=96.6
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..+++||+.+.+ |..-... .....+...+.+..++.||+ |.. ...++.||+.+.+ |+...
T Consensus 153 g~l~~~d~~tG~~~W~~~~~~---------~~~~~~~~~~~~~~~~~v~~-g~~------~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLDM---------PSLSLRGESAPTTAFGAAVV-GGD------NGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEE-CCT------TTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEeCCC---------CceeecCCCCcEEECCEEEE-EcC------CCEEEEEECCCCcEEEEEec
Confidence 369999987765 8765431 00111111233445777776 322 1269999998765 76543
Q ss_pred ccCCCCCCc--------ceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECC
Q 007111 90 AKGDIPVAR--------SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDD 159 (617)
Q Consensus 90 ~~g~~P~~R--------~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~ 159 (617)
..|... .....+..++.+|+.+. ...+++||+.+.+ |..- .+. ....+..++
T Consensus 217 ---~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~-----~~~---~~~~~~~~~ 278 (376)
T 3q7m_A 217 ---SQATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRE-----LGS---VNDFIVDGN 278 (376)
T ss_dssp ---CC-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEEC-----CCC---EEEEEEETT
T ss_pred ---ccCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeecc-----CCC---CCCceEECC
Confidence 112111 12233456788887641 2358999998774 8753 111 123334455
Q ss_pred cEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc-
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 236 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~- 236 (617)
. +|+.... ..++.||+.+++ |..... ..+...+.+..++.+|+... ...++.||+.+.+
T Consensus 279 ~-l~~~~~~------g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 279 R-IYLVDQN------DRVMALTIDGGVTLWTQSDL-----LHRLLTSPVLYNGNLVVGDS------EGYLHWINVEDGRF 340 (376)
T ss_dssp E-EEEEETT------CCEEEEETTTCCEEEEECTT-----TTSCCCCCEEETTEEEEECT------TSEEEEEETTTCCE
T ss_pred E-EEEEcCC------CeEEEEECCCCcEEEeeccc-----CCCcccCCEEECCEEEEEeC------CCeEEEEECCCCcE
Confidence 5 7776532 249999998765 664311 11222334456888887642 1358999988775
Q ss_pred -EEE
Q 007111 237 -WSV 239 (617)
Q Consensus 237 -W~~ 239 (617)
|..
T Consensus 341 ~~~~ 344 (376)
T 3q7m_A 341 VAQQ 344 (376)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 655
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.18 Score=52.08 Aligned_cols=191 Identities=13% Similarity=0.071 Sum_probs=99.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee-EEEEE-CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-TVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~-s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..-...- ....... +++.. ++.+++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d~------~i~iwd~~~ 170 (420)
T 3vl1_A 108 QMRRFILGTTE------GDIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQDM------QLKIWSVKD 170 (420)
T ss_dssp SSCEEEEEETT------SCEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETTS------EEEEEETTT
T ss_pred CCCEEEEEECC------CCEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCCC------eEEEEeCCC
Confidence 66778888753 24888898876543331 1111222 22222 456777776543 588999886
Q ss_pred CcEE-EeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE----
Q 007111 134 LTWL-PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL---- 207 (617)
Q Consensus 134 ~~W~-~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~---- 207 (617)
.+-. .+. + ....-.+++.. ++. +++.|+.++ .+..||+.++.-.........+... -.+++.
T Consensus 171 ~~~~~~~~--~---h~~~v~~~~~~~~~~-~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~ 238 (420)
T 3vl1_A 171 GSNPRTLI--G---HRATVTDIAIIDRGR-NVLSASLDG-----TIRLWECGTGTTIHTFNRKENPHDG-VNSIALFVGT 238 (420)
T ss_dssp CCCCEEEE--C---CSSCEEEEEEETTTT-EEEEEETTS-----CEEEEETTTTEEEEEECBTTBTTCC-EEEEEEEECC
T ss_pred CcCceEEc--C---CCCcEEEEEEcCCCC-EEEEEcCCC-----cEEEeECCCCceeEEeecCCCCCCC-ccEEEEecCC
Confidence 5422 121 1 11111233333 455 677777764 3899999877654432211111111 111111
Q ss_pred ------------------ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEE
Q 007111 208 ------------------CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA 269 (617)
Q Consensus 208 ------------------~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I 269 (617)
-++.+++.|+..+ .+.+||+.+..-...... .......++.+...+ ..+++
T Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~~~l~ 307 (420)
T 3vl1_A 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQLPS-----KFTCSCNSLTVDGNN-ANYIY 307 (420)
T ss_dssp CSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEEECC-----TTSSCEEEEEECSSC-TTEEE
T ss_pred cceeeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEEccc-----ccCCCceeEEEeCCC-CCEEE
Confidence 1566777776553 388999987653332210 011223344443222 32667
Q ss_pred EcCCCCCCCCeEEEEECCCCc
Q 007111 270 FGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 270 ~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.|+.++ .|.+||+.+..
T Consensus 308 ~g~~dg----~i~vwd~~~~~ 324 (420)
T 3vl1_A 308 AGYENG----MLAQWDLRSPE 324 (420)
T ss_dssp EEETTS----EEEEEETTCTT
T ss_pred EEeCCC----eEEEEEcCCCc
Confidence 777653 68999998754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.3 Score=48.31 Aligned_cols=221 Identities=8% Similarity=-0.049 Sum_probs=115.3
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+. ...+.. +...-.+++.. ++++|+.... ...+++||+.+.+...+....
T Consensus 50 ~~i~~~~~~~~-~~~~~~-------------~~~~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 50 NRTWAWSDDGQ-LSPEMH-------------PSHHQNGHCLNKQGHLIACSHG------LRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp TEEEEEETTSC-EEEEES-------------SCSSEEEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECEE
T ss_pred CEEEEEECCCC-eEEEEC-------------CCCCcceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeecc
Confidence 36888998877 555442 11112344433 5678776432 136999999888877664211
Q ss_pred C-CCCCcceeEEEEECCEEEEE----eecCC-------CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CC
Q 007111 93 D-IPVARSGHTVVRASSVLILF----GGEDG-------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DD 159 (617)
Q Consensus 93 ~-~P~~R~~~s~~~~~~~IYv~----GG~~~-------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~ 159 (617)
. .+..+....++.-++.+|+. |.... .......+++||+. .+...+. ..+..+ ...+.. ++
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~---~gi~~s~dg 183 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--RDRVKP---NGLAFLPSG 183 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--CCCSSE---EEEEECTTS
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--cCCCCC---ccEEECCCC
Confidence 1 11111122222235788886 43210 11113579999987 6655543 122111 233333 45
Q ss_pred cEEEEEccCCCCCCCCeEEEEECC-CCcE-EEeec-CCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 160 KNLLIFGGSSKSKTLNDLYSLDFE-TMIW-TRIKI-RGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 160 ~~LyV~GG~~~~~~~n~v~~yD~~-t~~W-~~~~~-~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+ +++.+... +.+++||+. ++.. ..... ......|+ .++.. ++.+|+..+ ..+++||+...
T Consensus 184 ~-~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~p~---~i~~d~~G~l~v~~~-------~~v~~~~~~g~ 247 (296)
T 3e5z_A 184 N-LLVSDTGD-----NATHRYCLNARGETEYQGVHFTVEPGKTD---GLRVDAGGLIWASAG-------DGVHVLTPDGD 247 (296)
T ss_dssp C-EEEEETTT-----TEEEEEEECSSSCEEEEEEEECCSSSCCC---SEEEBTTSCEEEEET-------TEEEEECTTSC
T ss_pred C-EEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCCCCCCC---eEEECCCCCEEEEcC-------CeEEEECCCCC
Confidence 5 44444332 469999986 5665 22211 11111122 23333 678888762 35899999866
Q ss_pred cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 236 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 236 ~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....+.. + .. ...+++...+...||+... +.+++|++++..
T Consensus 248 ~~~~~~~-~----~~---~~~~~f~~~d~~~L~v~t~------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 248 ELGRVLT-P----QT---TSNLCFGGPEGRTLYMTVS------TEFWSIETNVRG 288 (296)
T ss_dssp EEEEEEC-S----SC---CCEEEEESTTSCEEEEEET------TEEEEEECSCCB
T ss_pred EEEEEEC-C----CC---ceeEEEECCCCCEEEEEcC------CeEEEEEccccc
Confidence 5555542 1 11 2334443334456776543 268999998876
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.31 Score=48.32 Aligned_cols=233 Identities=11% Similarity=0.048 Sum_probs=105.5
Q ss_pred ceEEEEECC--CCcEEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEcccCCCCCCceEEEEEECCCC-cEEEe
Q 007111 14 DDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVV 88 (617)
Q Consensus 14 ~~v~~yd~~--t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g-~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~ 88 (617)
..+.+|++. +.++..+... +.+.. -..++.. + ..+|+.+.. . ..+.+||+... .....
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~s~dg~~l~~~~~~-~-----~~i~~~d~~~~~~~~~~ 122 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAES----------ALPGS-LTHISTDHQGQFVFVGSYN-A-----GNVSVTRLEDGLPVGVV 122 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEE----------ECSSC-CSEEEECTTSSEEEEEETT-T-----TEEEEEEEETTEEEEEE
T ss_pred CeEEEEEecCCCCceeecccc----------ccCCC-CcEEEEcCCCCEEEEEecC-C-----CeEEEEECCCCcccccc
Confidence 467777776 6777665441 11111 1223222 3 456665432 1 24777776322 22222
Q ss_pred eccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC-CcEEEee--cCCCCCCCCcccEEEEE-CCcEE
Q 007111 89 EAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLH--CTGTGPSPRSNHVAALY-DDKNL 162 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~--~~g~~P~~R~~h~a~~~-~~~~L 162 (617)
.. ++.....+.++.. +..+|+.+.. ...+.+||+.+ .++..+. .. ..+....-..++.. +++++
T Consensus 123 ~~---~~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 123 DV---VEGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp EE---ECCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEE
T ss_pred cc---ccCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEE
Confidence 21 1111112223332 3466665422 24589999987 6665331 00 11111111123333 45557
Q ss_pred EEEccCCCCCCCCeEEEEECC--CCcEEEeecCCCCCCC---Ccce-EEEEE--CCEEEEEecCCCCCccceEEEEECC-
Q 007111 163 LIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHPSP---RAGC-CGVLC--GTKWYIAGGGSRKKRHAETLIFDIL- 233 (617)
Q Consensus 163 yV~GG~~~~~~~n~v~~yD~~--t~~W~~~~~~g~~P~~---R~~h-a~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~- 233 (617)
|+.+..+ +.+.+||+. ++.+.........|.. .... .++.. +..+|+.+... ..+.+||+.
T Consensus 193 ~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~ 262 (343)
T 1ri6_A 193 YCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSE 262 (343)
T ss_dssp EEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECT
T ss_pred EEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----CEEEEEEEcC
Confidence 7766443 358889884 4555433221111221 1122 23333 34666665332 357888877
Q ss_pred -CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE--ECCCCcccc
Q 007111 234 -KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL--SIEKNESSM 293 (617)
Q Consensus 234 -~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy--d~~~~~W~~ 293 (617)
+..+..+...+... . ...+.+.. +...||+.++.+ +.|.+| |+.+.++..
T Consensus 263 ~~~~~~~~~~~~~~~----~-~~~~~~s~-dg~~l~~~~~~~----~~v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 263 DGSVLSKEGFQPTET----Q-PRGFNVDH-SGKYLIAAGQKS----HHISVYEIVGEQGLLHE 315 (343)
T ss_dssp TSCCEEEEEEEECSS----S-CCCEEECT-TSSEEEEECTTT----CEEEEEEEETTTTEEEE
T ss_pred CCCceEEeeeecCCC----c-cceEEECC-CCCEEEEecCCC----CeEEEEEEcCCCceeeE
Confidence 45566654322111 1 12233332 335566655433 245555 666666543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.013 Score=67.49 Aligned_cols=226 Identities=9% Similarity=0.064 Sum_probs=112.5
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-EC--CEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WG--KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g--~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
.+.+||.....+..+... ......-.++.. .+ +.+++.||.++ .+.+||+.++.|..+..
T Consensus 32 ~I~vwd~~~~~~~~~~~l----------~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~~~~~~- 94 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAV- 94 (753)
T ss_dssp EEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEEEEEEE-
T ss_pred cEEEEecCCCCCccceec----------cCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCccccccc-
Confidence 588899887777665541 111111123332 23 56777777632 48888888888766653
Q ss_pred CCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE----------
Q 007111 92 GDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---------- 157 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~---------- 157 (617)
.........++.+ + +.+++.||.++ .+.+||..+..-.........+.+ -.+++..
T Consensus 95 --~~~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~~~--v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 95 --HAVHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATIEEDGEH 164 (753)
T ss_dssp --ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCSSC--EEEEEECCCC-------
T ss_pred --ccCCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCCCc--eEEEEecCccccccccc
Confidence 2222222233333 2 66778887644 478888876621111000011111 1122222
Q ss_pred ----CCcEEEEEccCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE-C---CEEEEEecCCCCCccceE
Q 007111 158 ----DDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLC-G---TKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 158 ----~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~~P~~R~~ha~v~~-~---~~IyI~GG~s~~~~~~~v 227 (617)
++. +++.|+.++. |..||..++ .+........ ....-.+++.. + +.+++.||..+ .+
T Consensus 165 ~~~~d~~-~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg-----~I 231 (753)
T 3jro_A 165 NGTKESR-KFVTGGADNL-----VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDR-----TC 231 (753)
T ss_dssp --CGGGC-CEEEEETTSC-----EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSS-----CE
T ss_pred ccCCCCC-EEEEEECCCe-----EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCC-----EE
Confidence 234 6777777643 888887554 3444433211 11122233333 4 68888888654 37
Q ss_pred EEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 228 LIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 228 ~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+||+.+.. +..... ...........+.+.. ++.+++.||.++ .|.+|++...
T Consensus 232 ~iwd~~~~~~~~~~~~~---~~~~~~~~v~~l~~sp--dg~~l~s~s~Dg----~I~vwd~~~~ 286 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLL---KEEKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKENLE 286 (753)
T ss_dssp EEEEESSSSSCCBCCBS---SSSCCSSCCCCEEECT--TTCCEEEECSSS----CEECCBCCSS
T ss_pred EEecCCCCCCcceeEEe---ccCCCCCceEEEEEcC--CCCEEEEEcCCC----EEEEEecCCC
Confidence 788876642 111110 0001111222333332 344667777654 5788888743
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.64 Score=46.40 Aligned_cols=191 Identities=8% Similarity=0.002 Sum_probs=97.4
Q ss_pred ceEEEEECCCCcEEE-ccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeec
Q 007111 14 DDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~-l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 90 (617)
+.+.+||+.+.+-.. +.......|. ...+..-++++.. ++.+|+.+... ...+++||+.+.+-...-.
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCCCeeEEEEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEec
Confidence 478999998876432 2211000000 0011111333332 45777776321 2369999998876443321
Q ss_pred cCCCCCCcceeEEEE--ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEcc
Q 007111 91 KGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGG 167 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG 167 (617)
. .....+.++. .+..+|+... .+.+++||+.+.+-...-..+..........+++. +++.+|+.+.
T Consensus 182 ---~-~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 182 ---N-TGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp ---C-CCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred ---C-CCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 0 1111122222 2456766532 24688999998864332111111111111223333 4555766653
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
.+ +.+++||+.+++....... +.+. .++.. ++.+|+.+... ..+.+||+.+.+....
T Consensus 251 ~~-----~~v~~~d~~~~~~~~~~~~---~~~~---~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 251 KA-----AEVLVVDTRNGNILAKVAA---PESL---AVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVKT 309 (353)
T ss_dssp SS-----SEEEEEETTTCCEEEEEEC---SSCC---CEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred CC-----CEEEEEECCCCcEEEEEEc---CCCc---eEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEEE
Confidence 32 5699999988877655443 2222 23332 45688776433 4689999988765543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.42 Score=48.49 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=76.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++. ++.|+.+ ..+.+||+.+......- ...... -.+++. -++.+++.|+.++ .+.+||+.+.
T Consensus 154 ~~~-l~s~s~d------~~i~~wd~~~~~~~~~~---~~h~~~-v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~ 216 (340)
T 1got_B 154 DNQ-IVTSSGD------TTCALWDIETGQQTTTF---TGHTGD-VMSLSLAPDTRLFVSGACDA------SAKLWDVREG 216 (340)
T ss_dssp TTE-EEEEETT------SCEEEEETTTTEEEEEE---CCCSSC-EEEEEECTTSSEEEEEETTS------CEEEEETTTC
T ss_pred CCc-EEEEECC------CcEEEEECCCCcEEEEE---cCCCCc-eEEEEECCCCCEEEEEeCCC------cEEEEECCCC
Confidence 555 4555542 24888898887643322 111111 112222 2467778887654 4888998877
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~ 211 (617)
.-...- .+. ...-.+++.. ++. +++.|+.++. +..||+.+..-...... +........+.+ ++.
T Consensus 217 ~~~~~~-~~h---~~~v~~v~~~p~~~-~l~s~s~d~~-----v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 217 MCRQTF-TGH---ESDINAICFFPNGN-AFATGSDDAT-----CRLFDLRADQELMTYSH---DNIICGITSVSFSKSGR 283 (340)
T ss_dssp SEEEEE-CCC---SSCEEEEEECTTSS-EEEEEETTSC-----EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSS
T ss_pred eeEEEE-cCC---cCCEEEEEEcCCCC-EEEEEcCCCc-----EEEEECCCCcEEEEEcc---CCcccceEEEEECCCCC
Confidence 643321 011 1111123333 345 7788887654 89999987654332221 111122223333 567
Q ss_pred EEEEecCCCCCccceEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+++.|+.. ..+.+||+.+..
T Consensus 284 ~l~~g~~d-----~~i~vwd~~~~~ 303 (340)
T 1got_B 284 LLLAGYDD-----FNCNVWDALKAD 303 (340)
T ss_dssp EEEEEETT-----SEEEEEETTTCC
T ss_pred EEEEECCC-----CeEEEEEcccCc
Confidence 77777654 358899987654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.47 E-value=1.1 Score=47.01 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=97.5
Q ss_pred EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 54 ~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
..++.+++.|+.+. .+.+||+.+..-...- ....... .+++.. ++..++.|+.++ .+.+||+.
T Consensus 277 ~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~~v-~~~~~~~~~~~l~sg~~dg------~i~vwd~~ 340 (464)
T 3v7d_B 277 SGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTDRI-YSTIYDHERKRCISASMDT------TIRIWDLE 340 (464)
T ss_dssp EEETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSCE-EEEEEETTTTEEEEEETTS------CEEEEETT
T ss_pred cCCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCCCE-EEEEEcCCCCEEEEEeCCC------cEEEEECC
Confidence 33455666666532 4888998876543322 1111111 222222 456667776544 48999998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 212 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~I 212 (617)
+.+-...- ......-.++.+.+. .++.|+.++ .+..||+.+..-...... ...........++.+
T Consensus 341 ~~~~~~~~-----~~h~~~v~~~~~~~~-~l~s~s~dg-----~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 405 (464)
T 3v7d_B 341 NGELMYTL-----QGHTALVGLLRLSDK-FLVSAAADG-----SIRGWDANDYSRKFSYHH----TNLSAITTFYVSDNI 405 (464)
T ss_dssp TTEEEEEE-----CCCSSCEEEEEECSS-EEEEEETTS-----EEEEEETTTCCEEEEEEC----TTCCCEEEEEECSSE
T ss_pred CCcEEEEE-----eCCCCcEEEEEEcCC-EEEEEeCCC-----cEEEEECCCCceeeeecC----CCCccEEEEEeCCCE
Confidence 87643321 111122244455667 777777764 499999987654333221 122222333446777
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
++.|+ . ..+.+||+.+.+-......+ .......+.+. ...+++.|+.++ ..-++++|
T Consensus 406 l~~~~-d-----g~i~iwd~~~g~~~~~~~~~-----~~~~v~~v~~~---~~~l~~~~~~~g--~~~i~~ld 462 (464)
T 3v7d_B 406 LVSGS-E-----NQFNIYNLRSGKLVHANILK-----DADQIWSVNFK---GKTLVAAVEKDG--QSFLEILD 462 (464)
T ss_dssp EEEEE-T-----TEEEEEETTTCCEEESCTTT-----TCSEEEEEEEE---TTEEEEEEEETT--EEEEEEEE
T ss_pred EEEec-C-----CeEEEEECCCCcEEehhhcc-----CCCcEEEEEec---CCEEEEEEEeCC--eEEEEEee
Confidence 77766 2 35899999887654421111 12223333343 355666665543 23455555
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.2 Score=56.88 Aligned_cols=220 Identities=9% Similarity=0.049 Sum_probs=110.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||..+......-.. . ... -.+++.. ++..+++||.+ ..+.+||..+......-.
T Consensus 35 g~v~iwd~~~~~~~~~~~~---------~--~~~-v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~-- 94 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQV---------T--ETP-VRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDFE-- 94 (814)
T ss_dssp SEEEEEETTTTEEEEEEEC---------C--SSC-EEEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEEE--
T ss_pred CEEEEEECCCCceEEEEec---------C--CCc-EEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEe--
Confidence 3689999888765332210 0 111 1223222 55666777652 368899988887544321
Q ss_pred CCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC-cEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCC
Q 007111 93 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~ 169 (617)
. .... -.+++. -++..++.|+.+ ..+.+||..++ .....-. + ....-.+++... +..++++|+.+
T Consensus 95 ~-~~~~-v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~---~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 95 A-HPDY-IRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE-G---HEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp C-CSSC-EEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-C---CSSCEEEEEEETTEEEEEEEEETT
T ss_pred c-CCCC-EEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-C---CCCcEEEEEEEcCCCCEEEEEeCC
Confidence 1 1111 112222 245556666643 35888998776 3333211 1 111112333333 34477777766
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
+ .+..||+.+......... ........++.. ++.++++|+.. ..+.+||+.+.........
T Consensus 163 g-----~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~--- 226 (814)
T 3mkq_A 163 R-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATLEG--- 226 (814)
T ss_dssp S-----EEEEEETTCSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEEEEC---
T ss_pred C-----eEEEEECCCCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEEEcC---
Confidence 4 489999866543322221 111222233332 56677777654 3588999887653332110
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.......+.+... +.+++.||.++ .|.+||+.+.+
T Consensus 227 ---~~~~v~~~~~~~~--~~~l~~~~~dg----~v~vwd~~~~~ 261 (814)
T 3mkq_A 227 ---HMSNVSFAVFHPT--LPIIISGSEDG----TLKIWNSSTYK 261 (814)
T ss_dssp ---CSSCEEEEEECSS--SSEEEEEETTS----CEEEEETTTCS
T ss_pred ---CCCCEEEEEEcCC--CCEEEEEeCCC----eEEEEECCCCc
Confidence 1122334444332 33667777654 47777776543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.58 Score=48.16 Aligned_cols=218 Identities=12% Similarity=0.049 Sum_probs=107.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g 92 (617)
.+.+||+.+..-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+..- ..+.
T Consensus 120 ~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~--- 178 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQ------------AHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSNPRTLI--- 178 (420)
T ss_dssp CEEEECTTSCEEEEETT------------SSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCCCEEEE---
T ss_pred CEEEEeCCCcceeeecc------------cccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcCceEEc---
Confidence 58888887765433321 011111233332 45666677653 2688899876542 1221
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE---------------
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL--------------- 156 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~--------------- 156 (617)
. ... .-.+++.. ++.+++.|+.++ .+.+||+.+.+-...-.....+... -...+.
T Consensus 179 ~-h~~-~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 179 G-HRA-TVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDG-VNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp C-CSS-CEEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCC-EEEEEEEECCCSSCGGGCCCC
T ss_pred C-CCC-cEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCC-ccEEEEecCCcceeeecccCc
Confidence 0 111 11222222 456666777654 3888998877633321100001110 011111
Q ss_pred -------ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceE
Q 007111 157 -------YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAET 227 (617)
Q Consensus 157 -------~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v 227 (617)
-++. +++.|+.++. +..||+.+..-...... .....-.+++.. ++. +++.|+.. ..+
T Consensus 250 v~~~~~s~~~~-~l~~~~~dg~-----i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i 315 (420)
T 3vl1_A 250 KNNLEFGTYGK-YVIAGHVSGV-----ITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN-----GML 315 (420)
T ss_dssp CCTTCSSCTTE-EEEEEETTSC-----EEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT-----SEE
T ss_pred ccceEEcCCCC-EEEEEcCCCe-----EEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC-----CeE
Confidence 1344 6677776543 99999987764433221 111122233333 344 67777654 358
Q ss_pred EEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 228 LIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 228 ~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+||+.+.. ...+... ......++... .+.+++.||.++ .|.+|++...
T Consensus 316 ~vwd~~~~~~~~~~~~~~------~~~~v~~~~~~---~~~~l~s~~~d~----~v~iw~~~~~ 366 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLIN------EGTPINNVYFA---AGALFVSSGFDT----SIKLDIISDP 366 (420)
T ss_dssp EEEETTCTTSCSEEEEES------TTSCEEEEEEE---TTEEEEEETTTE----EEEEEEECCT
T ss_pred EEEEcCCCcCchhhhhcc------CCCCceEEEeC---CCCEEEEecCCc----cEEEEeccCC
Confidence 899987653 2222210 11123333333 355778888653 5788887663
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.67 Score=52.60 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=69.9
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCC--CCCC---cceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGD--IPVA---RSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~--~P~~---R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.... ..++.+|..+.+ |+.-..... .+.. ....+.++.++.||+... ..
T Consensus 73 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg 138 (677)
T 1kb0_A 73 PVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DG 138 (677)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CC
Confidence 34579999998652 359999998875 876542110 0000 112244567888888631 25
Q ss_pred eEEEEECCCCc--EEEeecCCCCCC-CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~-~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
.++.+|..+.+ |+.-... ..+. .....+-++.++. +|+..+......-..++.||..+++ |+...
T Consensus 139 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEECCE-EEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 69999998875 8864210 1111 1111223344555 6554332222234579999998765 87654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.17 Score=51.87 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=75.9
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+..+++|+.+ ..+.+||+.+..-...- ...... -.+++.. ++.+++.|+.++ .+.+||..+..
T Consensus 217 ~~~~~~~~~~------g~i~~~d~~~~~~~~~~---~~~~~~-i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~ 280 (425)
T 1r5m_A 217 DDKFVIPGPK------GAIFVYQITEKTPTGKL---IGHHGP-ISVLEFNDTNKLLLSASDDG------TLRIWHGGNGN 280 (425)
T ss_dssp TTEEEEECGG------GCEEEEETTCSSCSEEE---CCCSSC-EEEEEEETTTTEEEEEETTS------CEEEECSSSBS
T ss_pred CCEEEEEcCC------CeEEEEEcCCCceeeee---ccCCCc-eEEEEECCCCCEEEEEcCCC------EEEEEECCCCc
Confidence 3446666652 25889998876432221 111111 1222222 456677776543 47888887654
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 214 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI 214 (617)
....- . .....-.+++...+. +++.|+.++ .+..||+.+..-...... ....-.+++.. ++.+++
T Consensus 281 ~~~~~---~-~~~~~i~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~ 346 (425)
T 1r5m_A 281 SQNCF---Y-GHSQSIVSASWVGDD-KVISCSMDG-----SVRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKYA 346 (425)
T ss_dssp CSEEE---C-CCSSCEEEEEEETTT-EEEEEETTS-----EEEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEEE
T ss_pred cceEe---c-CCCccEEEEEECCCC-EEEEEeCCC-----cEEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEEE
Confidence 32221 0 111122344455566 677777653 599999987765443321 11112233333 566777
Q ss_pred EecCCCCCccceEEEEECCCCc
Q 007111 215 AGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+|+..+ .+.+||+.+..
T Consensus 347 ~~~~dg-----~i~i~~~~~~~ 363 (425)
T 1r5m_A 347 VAFMDG-----QVNVYDLKKLN 363 (425)
T ss_dssp EEETTS-----CEEEEECHHHH
T ss_pred EEECCC-----eEEEEECCCCc
Confidence 776543 47888886554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.57 Score=47.79 Aligned_cols=191 Identities=8% Similarity=-0.032 Sum_probs=94.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCC-----------CcceeEEEEECCEEEEEeecCCCCCccC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-----------ARSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~-----------~R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
++..++.|+.+ ..+..||+.+......-.....+. ...-.+++...+..++.|+.+ .
T Consensus 160 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g 227 (425)
T 1r5m_A 160 DGTHIISMDVE------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------G 227 (425)
T ss_dssp TSSEEEEEETT------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------G
T ss_pred CCCEEEEEecC------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------C
Confidence 45556666642 248888988776443321111010 000222223333446666654 3
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 125 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 125 ~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
.+.+||+.+..-...- ... ...-.+++.. ++. +++.|+.++ .+..||+.+........ .....-.
T Consensus 228 ~i~~~d~~~~~~~~~~---~~~-~~~i~~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~----~~~~~i~ 293 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKL---IGH-HGPISVLEFNDTNK-LLLSASDDG-----TLRIWHGGNGNSQNCFY----GHSQSIV 293 (425)
T ss_dssp CEEEEETTCSSCSEEE---CCC-SSCEEEEEEETTTT-EEEEEETTS-----CEEEECSSSBSCSEEEC----CCSSCEE
T ss_pred eEEEEEcCCCceeeee---ccC-CCceEEEEECCCCC-EEEEEcCCC-----EEEEEECCCCccceEec----CCCccEE
Confidence 5899999876432221 001 1111233333 455 677777654 38899987654332221 1112223
Q ss_pred EEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 204 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 204 a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
+++.. ++ +++.|+.. ..+.+||+.+..-...... .......+.+.. ++.++++|+.++ .|.
T Consensus 294 ~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~~------~~~~i~~~~~s~--~~~~l~~~~~dg----~i~ 355 (425)
T 1r5m_A 294 SASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSIV------DGVPIFAGRISQ--DGQKYAVAFMDG----QVN 355 (425)
T ss_dssp EEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEEC------TTCCEEEEEECT--TSSEEEEEETTS----CEE
T ss_pred EEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEeccc------CCccEEEEEEcC--CCCEEEEEECCC----eEE
Confidence 44444 44 66666654 3588999987654333211 111233333432 244667777653 588
Q ss_pred EEECCCCc
Q 007111 283 VLSIEKNE 290 (617)
Q Consensus 283 vyd~~~~~ 290 (617)
+||+.+..
T Consensus 356 i~~~~~~~ 363 (425)
T 1r5m_A 356 VYDLKKLN 363 (425)
T ss_dssp EEECHHHH
T ss_pred EEECCCCc
Confidence 88886543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=1 Score=45.59 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=98.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.||.+ ..+.+||+.+.. ....... ..............++. ++.|+.++ .+.+||+.+
T Consensus 108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~------~i~~wd~~~ 173 (340)
T 1got_B 108 SGNYVACGGLD------NICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDT------TCALWDIET 173 (340)
T ss_dssp TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCC------CeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECCC------cEEEEECCC
Confidence 55677777763 257888877643 1111100 00111111111223455 55555433 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 212 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~I 212 (617)
..-...- .+. ...-.+++...+..+++.|+.++. +..||+.+......-.. ....-.+++.. ++.+
T Consensus 174 ~~~~~~~-~~h---~~~v~~~~~~~~~~~l~sg~~d~~-----v~~wd~~~~~~~~~~~~----h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 174 GQQTTTF-TGH---TGDVMSLSLAPDTRLFVSGACDAS-----AKLWDVREGMCRQTFTG----HESDINAICFFPNGNA 240 (340)
T ss_dssp TEEEEEE-CCC---SSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTCSEEEEECC----CSSCEEEEEECTTSSE
T ss_pred CcEEEEE-cCC---CCceEEEEECCCCCEEEEEeCCCc-----EEEEECCCCeeEEEEcC----CcCCEEEEEEcCCCCE
Confidence 7654331 111 111123333333337888887754 89999987765433221 11112233333 5677
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.|+..+ .+.+||+.+..-.... .. .........+.+.. ++.+++.|+.++ .|.+||..+.+
T Consensus 241 l~s~s~d~-----~v~iwd~~~~~~~~~~--~~--~~~~~~v~~~~~s~--~g~~l~~g~~d~----~i~vwd~~~~~ 303 (340)
T 1got_B 241 FATGSDDA-----TCRLFDLRADQELMTY--SH--DNIICGITSVSFSK--SGRLLLAGYDDF----NCNVWDALKAD 303 (340)
T ss_dssp EEEEETTS-----CEEEEETTTTEEEEEE--CC--TTCCSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEcCCC-----cEEEEECCCCcEEEEE--cc--CCcccceEEEEECC--CCCEEEEECCCC----eEEEEEcccCc
Confidence 77777653 4889998876533221 10 11112334444443 345777777653 68889986644
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.30 E-value=0.14 Score=52.33 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=57.5
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCC--C-CCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT--G-PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~--~-P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++ +++.|+.+ ..+.+||+.+.+....-. +. . +....-.+++.. ++. +++.|+.++ ....+.+||+
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~--~~g~i~i~d~ 265 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS-LLAIAHDSN--SFGCITLYET 265 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEE-CCC---CCCCCEEEEEECSSTT-EEEEEEEET--TEEEEEEEET
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEe-ccccccccCCccceEEECCCCC-EEEEEecCC--CCceEEEEEC
Confidence 45 66666543 358999998876443211 10 0 001111222333 455 666766541 0135999999
Q ss_pred CCCcEEEeecCCCCC---------CCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 183 ETMIWTRIKIRGFHP---------SPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 183 ~t~~W~~~~~~g~~P---------~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
.+..-......+..+ ....-.+++.. ++.+++.|+.. ..+.+||+.+..-.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD-----GKLRFWDVKTKERI 326 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEEcCCCcee
Confidence 876543322210000 11111233333 56667777644 35889999876543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.27 E-value=0.54 Score=47.90 Aligned_cols=204 Identities=7% Similarity=0.029 Sum_probs=97.2
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCc------EEEeeccCCCCC---CcceeEEEEE-----CCEE-EEEeecCCCCCc
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIPV---ARSGHTVVRA-----SSVL-ILFGGEDGKRRK 122 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~g~~P~---~R~~~s~~~~-----~~~I-Yv~GG~~~~~~~ 122 (617)
.+++.|+.+. .+.+||+.+.. +..+. ..+. ...-.+++.. ++.+ ++.|+.++
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg---- 148 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG---- 148 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETTS----
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeec---ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC----
Confidence 7777777632 47777776665 66664 2211 1122223333 3555 77777643
Q ss_pred cCeEEEEECCC------Cc---EE---Eeec--CCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEE
Q 007111 123 LNDLHMFDLKS------LT---WL---PLHC--TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 188 (617)
Q Consensus 123 ~~~v~~yD~~t------~~---W~---~l~~--~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~ 188 (617)
.+.+||..+ .. |. .+.. .........-.+++...+. +++.|+.++ .+..||+.+....
T Consensus 149 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 149 --TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-----TVQISELSTLRPL 220 (397)
T ss_dssp --CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEE
T ss_pred --cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-----cEEEEECCCCcee
Confidence 377777765 22 21 1110 0000111122244445555 777777654 4999999877654
Q ss_pred EeecCC-CC-CCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC---C----CCCcceEEEE
Q 007111 189 RIKIRG-FH-PSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS---V----TSNKGFTLVL 258 (617)
Q Consensus 189 ~~~~~g-~~-P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~---p----~~r~~~s~v~ 258 (617)
..-... .. +....-.+++.. ++.+++.|+..+ ....+.+||+.+..-...-..+... + ........+.
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred EEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 332210 00 001222233332 566666666431 1135889998776533321110000 0 0122233334
Q ss_pred EeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 259 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 259 v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 299 ~~~--~~~~l~~~~~dg----~i~iwd~~~~~ 324 (397)
T 1sq9_A 299 FND--SGETLCSAGWDG----KLRFWDVKTKE 324 (397)
T ss_dssp ECS--SSSEEEEEETTS----EEEEEETTTTE
T ss_pred ECC--CCCEEEEEeCCC----eEEEEEcCCCc
Confidence 432 234666777543 68899987765
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.76 Score=47.98 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=110.3
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
+.|+++|..+++...+-. ...+...-.+++.. ++..++.|+.+. .+.+||+.+.+-....
T Consensus 125 ~tV~lWd~~tg~~~~~~~----------~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~--- 185 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQ----------MEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNM--- 185 (420)
T ss_dssp TEEEEEETTTCCEEEEEE----------CCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE---
T ss_pred CEEEEEECCCCCEEEEEE----------ecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEE---
Confidence 368999999988765433 11111111222222 567777777632 4888898887643332
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~ 171 (617)
..... ...+...++.+++.|+.+. .+..+|............+. .. ........ ++. .++.|+.++
T Consensus 186 ~~h~~--~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h--~~-~~~~~~~~~~g~-~l~s~~~D~- 252 (420)
T 4gga_A 186 TSHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH--SQ-EVCGLRWAPDGR-HLASGGNDN- 252 (420)
T ss_dssp CCCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC--SS-CEEEEEECTTSS-EEEEEETTS-
T ss_pred eCCCC--ceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEeccc--cc-ceeeeeecCCCC-eeeeeeccc-
Confidence 11222 2234445677777777644 46777776544322111111 11 11122222 345 666777664
Q ss_pred CCCCeEEEEECCCCcE--EEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 172 KTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W--~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
.+.++|..++.- ..+.... .....-.+++.. +..+++.||.+.+ ..+.+||+.+.........
T Consensus 253 ----~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~~---- 319 (420)
T 4gga_A 253 ----LVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDA---- 319 (420)
T ss_dssp ----CEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEEC----
T ss_pred ----cceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeecc----
Confidence 377888765431 1111110 011111222222 4445555443322 3588999988764443211
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
........+. .+...+++.+|+. -+.|.+||..+.+
T Consensus 320 ---~~~v~~~~~~-~~~~~lv~~sg~~---d~~I~iwd~~~~~ 355 (420)
T 4gga_A 320 ---HSQVCSILWS-PHYKELISGHGFA---QNQLVIWKYPTMA 355 (420)
T ss_dssp ---SSCEEEEEEE-TTTTEEEEEECTT---TCCEEEEETTTCC
T ss_pred ---ccceeeeeec-CCCCeEEEEEecC---CCEEEEEECCCCc
Confidence 1122333333 3345666665643 2368899987654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.21 E-value=0.32 Score=48.23 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=75.5
Q ss_pred EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcE
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W 187 (617)
.+++.||.+. .+.+||..+.+....-. + ... .-.+++.. ++. +++.|+.++ .+..||+.+..-
T Consensus 186 ~~~~s~~~d~------~i~i~d~~~~~~~~~~~-~--h~~-~v~~~~~s~~~~-~l~s~s~Dg-----~i~iwd~~~~~~ 249 (340)
T 4aow_A 186 PIIVSCGWDK------LVKVWNLANCKLKTNHI-G--HTG-YLNTVTVSPDGS-LCASGGKDG-----QAMLWDLNEGKH 249 (340)
T ss_dssp CEEEEEETTS------CEEEEETTTTEEEEEEC-C--CSS-CEEEEEECTTSS-EEEEEETTC-----EEEEEETTTTEE
T ss_pred cEEEEEcCCC------EEEEEECCCCceeeEec-C--CCC-cEEEEEECCCCC-EEEEEeCCC-----eEEEEEeccCce
Confidence 5566666543 37889998876544321 1 111 11122333 345 778888764 488999987654
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC---CCCCcceEEEEEeecCC
Q 007111 188 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS---VTSNKGFTLVLVQHKEK 264 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~---p~~r~~~s~v~v~~~~~ 264 (617)
...... ...-.+++...+..++.|+.. ..+.+||+.+............. ........++.+.. +
T Consensus 250 ~~~~~~-----~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--d 317 (340)
T 4aow_A 250 LYTLDG-----GDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA--D 317 (340)
T ss_dssp EEEEEC-----SSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT--T
T ss_pred eeeecC-----CceEEeeecCCCCceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC--C
Confidence 433222 111223333344455566543 35788888776533221111000 01112233344432 2
Q ss_pred cEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 265 DFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 265 ~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
+.+++.||.++ .|.+||+.+.
T Consensus 318 g~~l~sgs~Dg----~v~iW~~~tG 338 (340)
T 4aow_A 318 GQTLFAGYTDN----LVRVWQVTIG 338 (340)
T ss_dssp SSEEEEEETTS----CEEEEEEEC-
T ss_pred CCEEEEEeCCC----EEEEEeCCCc
Confidence 44667788764 5788887764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.94 Score=50.65 Aligned_cols=195 Identities=11% Similarity=0.055 Sum_probs=97.8
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC-cEEEeecCCCCCCCC
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPR 149 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R 149 (617)
...++++|+.+.....+... ......-..++. -+++.+++++.+... ....++++|+.+. .+..+..... +...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 35799999998876555410 011111122222 245544444443321 2468999999998 6766531111 0000
Q ss_pred -cccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCC
Q 007111 150 -SNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKK 222 (617)
Q Consensus 150 -~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---~~~IyI~GG~s~~~ 222 (617)
.....+.. +++ +++.+..++ ...+|.+|........+... ... ......+ ++.+|+.+... ..
T Consensus 310 ~~~~~~~~sp~~dg~-~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~---~~~--v~~~~~~spdg~~l~~~~~~~-~~ 379 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQ-FIWQSRRDG---WNHLYLYDTTGRLIRQVTKG---EWE--VTNFAGFDPKGTRLYFESTEA-SP 379 (706)
T ss_dssp CCCSCCEECTTCSSE-EEEEECTTS---SCEEEEEETTSCEEEECCCS---SSC--EEEEEEECTTSSEEEEEESSS-CT
T ss_pred CccCCceeecCCCCE-EEEEEccCC---ccEEEEEECCCCEEEecCCC---CeE--EEeeeEEcCCCCEEEEEecCC-CC
Confidence 00122333 455 555554443 35689999777766665331 111 1121233 34566665432 22
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....+|.+|+.+.....+.. ..+...+.+..++ . .+++...+......++++|+.+.+
T Consensus 380 ~~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~spdg-~-~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDLTP--------ESGMHRTQLSPDG-S-AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCBEEEEEETTCCCCEESCC--------SSSEEEEEECTTS-S-EEEEEEECSSCSCEEEEEESSSCE
T ss_pred ceEEEEEEEcCCCCceeccC--------CCceEEEEECCCC-C-EEEEEecCCCCCcEEEEEECCCCe
Confidence 23578999998877655531 1123334444333 2 344443333334578888876654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.47 Score=54.53 Aligned_cols=226 Identities=10% Similarity=0.050 Sum_probs=120.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.++....... + ..+...-.+++.. ++.||+-.. ..+++||+.+++|.......
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~---~-----~l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~ 490 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRN---S-----QLVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEK 490 (795)
T ss_dssp TEEEEEETTTCCEEEECTTT---S-----CCSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCT
T ss_pred CceeEEeCCCCcEEEeecCC---C-----CcCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccc
Confidence 35888999888887765310 0 1122222344443 466776532 13899999999998875321
Q ss_pred ---CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE-E-CCcEEEEEc
Q 007111 93 ---DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL-Y-DDKNLLIFG 166 (617)
Q Consensus 93 ---~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~-~-~~~~LyV~G 166 (617)
.++.... .+++.. ++.||+... .-+++||+.+..+ .+......+........++ . .+..|++..
T Consensus 491 ~~~~~~~~~i-~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 491 DGTPVVSKQI-TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT 560 (795)
T ss_dssp TCCBCCCCCE-EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE
T ss_pred cccccCCceE-EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe
Confidence 1111111 222222 467777432 2389999999888 5421001010111122222 2 233366643
Q ss_pred cCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 167 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
. . .+++||+.++++..+....-.|... ..+++.. ++.+|+.+. .-+.+||+.+..+........
T Consensus 561 ~-~------Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dG 625 (795)
T 4a2l_A 561 R-E------GFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDG 625 (795)
T ss_dssp S-S------CEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGT
T ss_pred C-C------CceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCC
Confidence 2 2 2999999999998875432233322 2334433 567887763 248899999998887653221
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+.......++... .++.|| |||.+ -+.+|++..-
T Consensus 626 -l~~~~f~~~~~~~~--~~G~l~-~g~~~-----Gl~~~~p~~~ 660 (795)
T 4a2l_A 626 -LQSNQFNTASYCRT--SVGQMY-FGGIN-----GITTFRPELL 660 (795)
T ss_dssp -CSCSCEEEEEEEEC--TTSCEE-EEETT-----EEEEECGGGC
T ss_pred -CccccCccCceeEC--CCCeEE-EecCC-----ceEEEcHHHc
Confidence 12222222333333 234454 67654 4788887653
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.57 Score=49.04 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=93.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.||.+. .+.+||+.+..-... +........++.+ ++.+++.||.++ .+.+||+.+
T Consensus 161 ~~~~l~sgs~D~------~i~iwd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D~------~i~~wd~~~ 223 (410)
T 1vyh_C 161 SGKLLASCSADM------TIKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRDK------TIKMWEVQT 223 (410)
T ss_dssp TSSEEEEEETTS------CCCEEETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETTS------EEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCC
Confidence 466777777632 366677766543221 1111122222232 456677777543 588999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---- 208 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---- 208 (617)
......- .+. .. .-..+... ++. +++.|+.++. +..||+.+......-.. .. ..-.+++..
T Consensus 224 ~~~~~~~-~~h--~~-~v~~~~~~~~g~-~l~s~s~D~~-----v~vwd~~~~~~~~~~~~--h~--~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 224 GYCVKTF-TGH--RE-WVRMVRPNQDGT-LIASCSNDQT-----VRVWVVATKECKAELRE--HR--HVVECISWAPESS 289 (410)
T ss_dssp CCEEEEE-ECC--SS-CEEEEEECTTSS-EEEEEETTSC-----EEEEETTTCCEEEEECC--CS--SCEEEEEECCSCG
T ss_pred CcEEEEE-eCC--Cc-cEEEEEECCCCC-EEEEEcCCCe-----EEEEECCCCceeeEecC--CC--ceEEEEEEcCccc
Confidence 7643321 011 11 11122222 345 7778887643 88899887765543211 00 001111111
Q ss_pred -----------------CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEc
Q 007111 209 -----------------GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 271 (617)
Q Consensus 209 -----------------~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~G 271 (617)
.+.+++.|+.. ..+.+||+.+..-..... . .......+.+.. ++.+++.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D-----~~i~iwd~~~~~~~~~~~-~-----h~~~v~~v~~~~--~g~~l~s~ 356 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCLMTLV-G-----HDNWVRGVLFHS--GGKFILSC 356 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEEEEEE-C-----CSSCEEEEEECS--SSSCEEEE
T ss_pred ccchhhhccccccccCCCCCEEEEEeCC-----CeEEEEECCCCceEEEEE-C-----CCCcEEEEEEcC--CCCEEEEE
Confidence 24566666654 358899988764322110 0 111223334432 23456677
Q ss_pred CCCCCCCCeEEEEECCCCc
Q 007111 272 GIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 272 G~~~~~~~dV~vyd~~~~~ 290 (617)
|.++ .|.+||..+.+
T Consensus 357 s~D~----~i~vwd~~~~~ 371 (410)
T 1vyh_C 357 ADDK----TLRVWDYKNKR 371 (410)
T ss_dssp ETTT----EEEEECCTTSC
T ss_pred eCCC----eEEEEECCCCc
Confidence 7653 68888886654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.62 Score=46.29 Aligned_cols=224 Identities=8% Similarity=-0.018 Sum_probs=110.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-E-CCEEEEEcccCCCCCCceEEEEEECCCCcE-EEeec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-W-GKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~ 90 (617)
+.+.+||+.+.+...... .+ .. ..+++. - +..+|+.+... ..+++||+.+... .....
T Consensus 20 ~~v~~~d~~~~~~~~~~~----------~~--~~-~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQIT----------LG--YD-FVDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp TEEEEEETTTCCEEEEEE----------CC--CC-EEEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEE
T ss_pred CeEEEEeCcccceeeeEE----------cc--CC-cceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecc
Confidence 479999999988765543 11 11 112222 2 34577776532 2799999988874 22221
Q ss_pred cCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 91 KGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
.+ ..++.+.+....+..+| .+...+. ...+++||+.+.+....-..+. ..+.+++. +++++|+.+..+
T Consensus 81 ~~--~~~~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 81 EG--QSSMADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPY-----DAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp EC--SSCCCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCT-----TEEEEEECTTSSCEEEEEETT
T ss_pred cC--CCCccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCC-----CccceEECCCCCEEEEEecCC
Confidence 11 11221111111234666 3322111 2379999999887654421111 12344444 344577765543
Q ss_pred CCCCCCe-EEEEECCCCc-EEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEECCCCcE----EEee
Q 007111 170 KSKTLND-LYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGEW----SVAI 241 (617)
Q Consensus 170 ~~~~~n~-v~~yD~~t~~-W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl~~~~W----~~l~ 241 (617)
+. +.+|++..+. ....... ..+....-..++.. ++ .+|+.+... ..+.+||+.+.+. ..++
T Consensus 150 -----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 150 -----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp -----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEE
T ss_pred -----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeecc
Confidence 23 6677664322 1111000 00111212333333 44 577776433 4689999987664 2232
Q ss_pred cCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 242 TSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 242 ~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
. . .....+.+. .+...+|+..+. .+.|.++|+.+.+.
T Consensus 219 ~---~-----~~~~~~~~s-pdg~~l~v~~~~----~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 219 T---N-----NLPGTIVVS-RDGSTVYVLTES----TVDVFNFNQLSGTL 255 (331)
T ss_dssp C---S-----SCCCCEEEC-TTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred C---C-----CCCceEEEC-CCCCEEEEEEcC----CCEEEEEECCCCce
Confidence 1 1 111122333 233556665542 23688999987664
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=1.1 Score=43.51 Aligned_cols=190 Identities=10% Similarity=-0.002 Sum_probs=99.9
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEE
Q 007111 50 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 50 hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~ 127 (617)
++++.. ++++|+.+.. ...+++||+ +......... ........++.. ++.+|+... ....++
T Consensus 102 ~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~------~~~~i~ 165 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTEN------QNNAIG 165 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEET------TTTEEE
T ss_pred eeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeC------CCCEEE
Confidence 445444 5688887532 136899999 6666655421 112223344443 468887542 135689
Q ss_pred EEECCCCcEEEeecCCCCCCCCccc-EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEE
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCG 205 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h-~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~ 205 (617)
+||+ +.+...+.. +...... .++...+..+|+..... +.+++||+ ++.+..+... ..... .++
T Consensus 166 ~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~~----~~~~~~~~i 230 (299)
T 2z2n_A 166 RITE-SGDITEFKI----PTPASGPVGITKGNDDALWFVEIIG-----NKIGRITT-SGEITEFKIP----TPNARPHAI 230 (299)
T ss_dssp EECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEECS----STTCCEEEE
T ss_pred EEcC-CCcEEEeeC----CCCCCcceeEEECCCCCEEEEccCC-----ceEEEECC-CCcEEEEECC----CCCCCceeE
Confidence 9999 777776531 1111122 33333333377765332 45999999 7777765332 11122 233
Q ss_pred EEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 206 VLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 206 v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
+.. ++.+|+..... +.+++||+ ......... +. .......+.+ .++.||+.... +.+.+|
T Consensus 231 ~~~~~g~l~v~~~~~-----~~i~~~d~-~g~~~~~~~-~~----~~~~~~~i~~---~~g~l~v~~~~-----~~l~~~ 291 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGA-----NKIGRLTS-NNIIEEYPI-QI----KSAEPHGICF---DGETIWFAMEC-----DKIGKL 291 (299)
T ss_dssp EECSTTCEEEEETTT-----TEEEEEET-TTEEEEEEC-SS----SSCCEEEEEE---CSSCEEEEETT-----TEEEEE
T ss_pred EECCCCCEEEeccCC-----ceEEEECC-CCceEEEeC-CC----CCCccceEEe---cCCCEEEEecC-----CcEEEE
Confidence 333 56788875322 35889998 445544431 11 1112222333 24567765431 368888
Q ss_pred ECCCC
Q 007111 285 SIEKN 289 (617)
Q Consensus 285 d~~~~ 289 (617)
++.+.
T Consensus 292 ~~~~~ 296 (299)
T 2z2n_A 292 TLIKD 296 (299)
T ss_dssp EEC--
T ss_pred EcCcc
Confidence 88764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.13 E-value=1.2 Score=44.17 Aligned_cols=187 Identities=9% Similarity=-0.006 Sum_probs=89.9
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+..-...-. .....-.+++.. ++..++.|+.+ ..+.+||+.+......-.
T Consensus 55 ~i~vwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~--- 113 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLD------------GHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSNGQCVATWK--- 113 (369)
T ss_dssp CEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEE---
T ss_pred EEEEEeCCCchhhhhhh------------hcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEEEEee---
Confidence 58889987766433221 011111223332 45666677653 268899998876544331
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCc----EEEeecCC--CC--CCCCcccEEEEE--CCcEE
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTG--TG--PSPRSNHVAALY--DDKNL 162 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~g--~~--P~~R~~h~a~~~--~~~~L 162 (617)
.+. .-.+++. .++.+++.++.+.. .....+.+||+.+.. +....... .+ ........++.+ ++. +
T Consensus 114 ~~~--~v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (369)
T 3zwl_B 114 SPV--PVKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-Y 189 (369)
T ss_dssp CSS--CEEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-E
T ss_pred cCC--CeEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-E
Confidence 111 1112222 24555566554421 123567788776542 22221000 00 000002222222 344 6
Q ss_pred EEEccCCCCCCCCeEEEEECCC-CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 163 LIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 163 yV~GG~~~~~~~n~v~~yD~~t-~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
+++|+.++ .+..||+.+ ......... ....-.+++.. ++.+++.|+.. ..+.+||+.+......
T Consensus 190 l~~~~~dg-----~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 190 IIAGHKDG-----KISKYDVSNNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKK 255 (369)
T ss_dssp EEEEETTS-----EEEEEETTTTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE
T ss_pred EEEEcCCC-----EEEEEECCCCcEeEEEEec----CCCceeEEEECCCCCEEEEecCC-----ceEEEEECCCCceeee
Confidence 66776653 599999987 333322221 11112233333 56666776644 3588999987665443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=1.3 Score=49.59 Aligned_cols=153 Identities=8% Similarity=-0.005 Sum_probs=80.0
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCC
Q 007111 123 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPR 200 (617)
Q Consensus 123 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R 200 (617)
...++++|+.+.+...+.. + .....+-...+.. +++ .++++..+.......++.+|+.++ .+..+..... +...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~-~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT-G-EPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCC-C-SCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeecc-C-CCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 3679999999888765531 1 1111121222333 455 444444443333457999999998 7766543111 1000
Q ss_pred -cceEEEE-E--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEE-EEEeecCCcEEEEEcCCCC
Q 007111 201 -AGCCGVL-C--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTL-VLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 201 -~~ha~v~-~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~-v~v~~~~~~~L~I~GG~~~ 275 (617)
....++. - ++++++.+...+ ...+|.+|.....+..+.. ....... +.+. .+...|++.+..++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-------~~~~v~~~~~~s-pdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-------GEWEVTNFAGFD-PKGTRLYFESTEAS 378 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-------SSSCEEEEEEEC-TTSSEEEEEESSSC
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-------CCeEEEeeeEEc-CCCCEEEEEecCCC
Confidence 0011222 2 667655554332 3678999977777766531 1112222 3343 23456666655433
Q ss_pred CCCCeEEEEECCCCc
Q 007111 276 EPSNQVEVLSIEKNE 290 (617)
Q Consensus 276 ~~~~dV~vyd~~~~~ 290 (617)
.....||.+|..+.+
T Consensus 379 ~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 379 PLERHFYCIDIKGGK 393 (706)
T ss_dssp TTCBEEEEEETTCCC
T ss_pred CceEEEEEEEcCCCC
Confidence 234588999987765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.72 Score=52.94 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=118.1
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCE-EEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~-lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
.+.+||+.+..+........ .+. ...+...-.+++.. ++. ||| |... ..+++||+.++.+.......
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~-~~~---~~l~~~~v~~i~~d~~g~~lWi-gt~~------~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQED-ESA---RGIGSNNIKAVYVDEKKSLVYI-GTHA------GGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp CEEEECTTTCCEEEECCC----------CCSCSCEEEEEEETTTTEEEE-EETT------TEEEEEETTTCCEEEECTTT
T ss_pred CeEEEcCCCCcEEEEecCCC-Ccc---cCCCCccEEEEEEcCCCCEEEE-EeCc------CceeEEeCCCCcEEEeecCC
Confidence 47888888888776653100 000 01122223455554 456 665 3321 25899999999888775321
Q ss_pred -CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCC---CCCCCCcccEEEEECCcEEEEEcc
Q 007111 93 -DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG---TGPSPRSNHVAALYDDKNLLIFGG 167 (617)
Q Consensus 93 -~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g---~~P~~R~~h~a~~~~~~~LyV~GG 167 (617)
.++.. .-.+++.. ++.||+-. . +.+++||+.+.+|+.+.... .++... -.+.+.-.+..|+|...
T Consensus 447 ~~l~~~-~v~~i~~d~~g~lwigt-~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g~lWigt~ 516 (795)
T 4a2l_A 447 SQLVNE-NVYAILPDGEGNLWLGT-L-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQ-ITTLFRDSHKRLWIGGE 516 (795)
T ss_dssp SCCSCS-CEEEEEECSSSCEEEEE-S-------SCEEEEETTTTEEEECCBCTTCCBCCCCC-EEEEEECTTCCEEEEES
T ss_pred CCcCCC-eeEEEEECCCCCEEEEe-c-------CceeEEeCCCCeEEEccccccccccCCce-EEEEEECCCCCEEEEeC
Confidence 11211 11222222 46777643 1 24899999999998874220 111111 11222222333666433
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecC---CCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecC
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIR---GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 243 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~---g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~ 243 (617)
. .+++||+.++.+ .+... ...+. ..-.+++.. ++.+||.... -+++||+.+..+......
T Consensus 517 -~------Gl~~~~~~~~~~-~~~~~~~~~~l~~-~~i~~i~~d~~g~lWigT~~-------Gl~~~d~~~~~~~~~~~~ 580 (795)
T 4a2l_A 517 -E------GLSVFKQEGLDI-QKASILPVSNVTK-LFTNCIYEASNGIIWVGTRE-------GFYCFNEKDKQIKRYNTT 580 (795)
T ss_dssp -S------CEEEEEEETTEE-EECCCSCSCGGGG-SCEEEEEECTTSCEEEEESS-------CEEEEETTTTEEEEECGG
T ss_pred -C------ceEEEeCCCCeE-EEecCCCCCCCCC-CeeEEEEECCCCCEEEEeCC-------CceeECCCCCcEEEeCCC
Confidence 2 399999999888 44321 00111 111233332 5677775421 288999999988876432
Q ss_pred CCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 244 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 244 ~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
. ..| .. ...++... .++.|++.+. +-+.+||+.+.++
T Consensus 581 ~-gl~-~~-~i~~i~~d--~~g~lWi~t~------~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 581 N-GLP-NN-VVYGILED--SFGRLWLSTN------RGISCFNPETEKF 617 (795)
T ss_dssp G-TCS-CS-CEEEEEEC--TTSCEEEEET------TEEEEEETTTTEE
T ss_pred C-CCc-hh-heEEEEEC--CCCCEEEEcC------CceEEEcCCCCcE
Confidence 1 111 11 12222222 3466776553 2577888877664
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.14 Score=58.81 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=102.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++.||.+ ..+.+||..+.++..+.. +........++.+ + +.+++.||.++ .+.+||+
T Consensus 20 dg~~latg~~d------g~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~ 84 (753)
T 3jro_A 20 YGKRLATCSSD------KTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKE 84 (753)
T ss_dssp SSCCEEEEETT------TEEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEE
T ss_pred CCCeEEEEECC------CcEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEEC
Confidence 45666677653 257778877777766652 2222222223333 2 67778887654 3889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEE-C---CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALY-D---DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~-~---~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
.+..|..+.. +......-.++.+ . +. ++++|+.++ .|..||+.+..-.........+. .-.+++.
T Consensus 85 ~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~ 153 (753)
T 3jro_A 85 ENGRWSQIAV---HAVHSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAI--GVNSASW 153 (753)
T ss_dssp ETTEEEEEEE---ECCCSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCSSSCCCCEEEECCSS--CEEEEEE
T ss_pred CCCccccccc---ccCCCCCeEEEEECCCCCCC-EEEEEeCCC-----cEEEEEeecCCCcceeEeecCCC--ceEEEEe
Confidence 9998876642 1111122223333 2 45 778888764 48899987652211111000111 1122222
Q ss_pred E--------------CCEEEEEecCCCCCccceEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEeecC-CcEEEEE
Q 007111 208 C--------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAF 270 (617)
Q Consensus 208 ~--------------~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~~l~~~~~~~p~~r~~~s~v~v~~~~-~~~L~I~ 270 (617)
. ++.+++.|+..+ .+.+||+.+. .+........ ......++.+...+ .+.+++.
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEG----HSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECC----CSSCEEEEEECCCCSSSEEEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecC----CCCcEEEEEeccCCCCCCEEEE
Confidence 2 256777777653 3777776543 3444332111 11223333443221 0567788
Q ss_pred cCCCCCCCCeEEEEECCCC
Q 007111 271 GGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 271 GG~~~~~~~dV~vyd~~~~ 289 (617)
||.++ .|.+||+.+.
T Consensus 225 ~s~Dg----~I~iwd~~~~ 239 (753)
T 3jro_A 225 VSQDR----TCIIWTQDNE 239 (753)
T ss_dssp EESSS----CEEEEEESSS
T ss_pred EecCC----EEEEecCCCC
Confidence 88764 5788888765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.07 E-value=1.2 Score=43.38 Aligned_cols=190 Identities=16% Similarity=0.111 Sum_probs=93.3
Q ss_pred EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 54 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 54 ~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
.+++..++.|+.+ ..+..||.....+.... ...+.........++.+++.|+.++ .+.+||...
T Consensus 111 ~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~ 174 (313)
T 3odt_A 111 SFQDGVVISGSWD------KTAKVWKEGSLVYNLQA----HNASVWDAKVVSFSENKFLTASADK------TIKLWQNDK 174 (313)
T ss_dssp EEETTEEEEEETT------SEEEEEETTEEEEEEEC----CSSCEEEEEEEETTTTEEEEEETTS------CEEEEETTE
T ss_pred EecCCEEEEEeCC------CCEEEEcCCcEEEeccc----CCCceeEEEEccCCCCEEEEEECCC------CEEEEecCc
Confidence 3355566666653 25777883222222221 1111111112222566677776544 378888332
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 212 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~I 212 (617)
. -..+. .+....-.+++...+.. ++.|+.++ .+..||+.+..-...... ....-.+++.. ++ .
T Consensus 175 ~-~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~-~ 238 (313)
T 3odt_A 175 V-IKTFS----GIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGDVLRTYEG----HESFVYCIKLLPNG-D 238 (313)
T ss_dssp E-EEEEC----SSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCCEEEEEEC----CSSCEEEEEECTTS-C
T ss_pred e-EEEEe----ccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchhhhhhhhc----CCceEEEEEEecCC-C
Confidence 1 22221 11122222344444553 66676654 499999987654433221 11112233333 44 4
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCccc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 292 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~ 292 (617)
++.||.. ..+.+||+.+.......... ......+.+... +. ++.|+.++ .|.+||+.+.++.
T Consensus 239 l~~~~~d-----g~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~--~~-~~~~~~dg----~i~iw~~~~~~~~ 300 (313)
T 3odt_A 239 IVSCGED-----RTVRIWSKENGSLKQVITLP------AISIWSVDCMSN--GD-IIVGSSDN----LVRIFSQEKSRWA 300 (313)
T ss_dssp EEEEETT-----SEEEEECTTTCCEEEEEECS------SSCEEEEEECTT--SC-EEEEETTS----CEEEEESCGGGCC
T ss_pred EEEEecC-----CEEEEEECCCCceeEEEecc------CceEEEEEEccC--CC-EEEEeCCC----cEEEEeCCCCcee
Confidence 5566644 35889999887654433211 112333444333 23 45576653 6899999887764
Q ss_pred c
Q 007111 293 M 293 (617)
Q Consensus 293 ~ 293 (617)
.
T Consensus 301 ~ 301 (313)
T 3odt_A 301 S 301 (313)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.36 Score=50.94 Aligned_cols=187 Identities=10% Similarity=-0.011 Sum_probs=100.4
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CC-EEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~-~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++++|+.+.+...+... +.. ..+++.. ++ .|++.+..+. ...+|++|+.+.....+..
T Consensus 203 ~~i~~~d~~tg~~~~l~~~------------~~~-~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~- 264 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASF------------PRH-NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD- 264 (415)
T ss_dssp CEEEEEETTTCCEEEEECC------------SSC-EEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCC-
T ss_pred cEEEEEECCCCcEEEeecC------------CCc-ccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcC-
Confidence 4789999998887665431 111 1222222 44 4554544311 2479999999988765541
Q ss_pred CCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 92 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 92 g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
.+ . .....+. -+++.+++++.... ...+|.+|+.+..-..+.. ........+.. +++ .+++++..
T Consensus 265 --~~-~-~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~-~l~~~~~~ 331 (415)
T 2hqs_A 265 --GR-S-NNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGK-FMVMVSSN 331 (415)
T ss_dssp --CS-S-CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSS-EEEEEEEC
T ss_pred --CC-C-cccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCC-EEEEEECc
Confidence 11 1 1112222 24554454443221 3579999998887555421 11222223332 455 44444433
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
.. ...++++|+.++....+... . ...+.+.. +++.+++++.... ...+|++|+.......+.
T Consensus 332 ~g--~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 332 GG--QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp SS--CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECC
T ss_pred CC--ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEee
Confidence 21 34699999999888655432 1 22233333 5565555553321 246899999877776664
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.27 Score=50.52 Aligned_cols=189 Identities=11% Similarity=0.034 Sum_probs=94.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+++.++.|+.+. .+.+||+.+......- ....... .+++.. ++.+++.||.++ .+.+||+.+
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~---~~h~~~v-~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSY---NAHSSEV-NCVAACPGKDTIFLSCGEDG------RILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSCE-EEEEECTTCSSCEEEEETTS------CEEECCTTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cCCCCCE-EEEEEccCCCceeeeeccCC------ceEEEECCC
Confidence 566777777632 4888898887643322 1111111 122222 235777777654 378888877
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT 210 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~ 210 (617)
.+-.... ..........++.+ ++..+++.|+.++ .|..||+.+..-...... ....-.+++.. ++
T Consensus 214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~~~~~~~~~----~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNPDSAQTSAV----HSQNITGLAYSYHS 281 (357)
T ss_dssp SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCGGGCEEECC----CSSCEEEEEECSSS
T ss_pred Cceeeee---eeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCCcEeEEEec----cceeEEEEEEcCCC
Confidence 6533221 11111111223333 2233777887764 388999876542221111 11111233332 33
Q ss_pred -EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 211 -KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 211 -~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+++.|+..+ .+.+||+.+.+..... . -......+.+... ++.+++.||.++ .|.+|++...
T Consensus 282 ~~~lasgs~D~-----~i~iwd~~~~~~~~~~--~-----H~~~V~~vafsP~-d~~~l~s~s~Dg----~v~iW~~~~~ 344 (357)
T 4g56_B 282 SPFLASISEDC-----TVAVLDADFSEVFRDL--S-----HRDFVTGVAWSPL-DHSKFTTVGWDH----KVLHHHLPSE 344 (357)
T ss_dssp SCCEEEEETTS-----CEEEECTTSCEEEEEC--C-----CSSCEEEEEECSS-STTEEEEEETTS----CEEEEECC--
T ss_pred CCEEEEEeCCC-----EEEEEECCCCcEeEEC--C-----CCCCEEEEEEeCC-CCCEEEEEcCCC----eEEEEECCCC
Confidence 5566666543 4888998877544321 1 1122334444322 244677888765 4788887543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.27 Score=50.63 Aligned_cols=188 Identities=11% Similarity=0.043 Sum_probs=93.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
+++.++.|+.+. .+.++|+.++.-...- ........++.+ +..+++.|+.++ .+.+||..
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-----RAHAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-----CCCSSCEEEEEECSSCTTEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE-----cCcCCceEEEEecCCCCCceeeecccc------cccccccc
Confidence 566777777632 4888898887533221 111111122222 335777777654 37889998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G 209 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~ 209 (617)
+.+-...- ..........++.+ ++..+++.|+.++ .|.+||+.+++-...-. + ....-.+++.. +
T Consensus 201 ~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~~~~~~-~---h~~~v~~v~fsp~ 268 (344)
T 4gqb_B 201 CPKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSCVLSSA-V---HSQCVTGLVFSPH 268 (344)
T ss_dssp SSSCEEEC---C----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--CCEEEE-C---CSSCEEEEEECSS
T ss_pred ccceeeee---ecceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcEEEEEc-C---CCCCEEEEEEccC
Confidence 77643321 11111111122222 2333778887764 48899987654321111 0 11112233332 3
Q ss_pred C-EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 210 T-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 210 ~-~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+ .+++.|+..+ .+.+||..+..-.... . -......+.+.. +...+++.||.++ .|.++++.+
T Consensus 269 g~~~lasgs~D~-----~i~vwd~~~~~~~~~~--~-----H~~~V~~v~~sp-~~~~llas~s~D~----~v~~w~v~~ 331 (344)
T 4gqb_B 269 SVPFLASLSEDC-----SLAVLDSSLSELFRSQ--A-----HRDFVRDATWSP-LNHSLLTTVGWDH----QVVHHVVPT 331 (344)
T ss_dssp SSCCEEEEETTS-----CEEEECTTCCEEEEEC--C-----CSSCEEEEEECS-SSTTEEEEEETTS----CEEEEECCC
T ss_pred CCeEEEEEeCCC-----eEEEEECCCCcEEEEc--C-----CCCCEEEEEEeC-CCCeEEEEEcCCC----eEEEEECCC
Confidence 3 5566666543 4788898877543321 1 111233344432 2345777888765 466677654
Q ss_pred C
Q 007111 289 N 289 (617)
Q Consensus 289 ~ 289 (617)
.
T Consensus 332 ~ 332 (344)
T 4gqb_B 332 E 332 (344)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.093 Score=52.67 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=37.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+......-. .+.........+.+ ++..++.||.++ .+.+||+.+
T Consensus 127 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~ 192 (366)
T 3k26_A 127 DPNLLLSVSKD------HALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINS 192 (366)
T ss_dssp CTTEEEEEETT------SCEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCS
T ss_pred CCCEEEEEeCC------CeEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCCC------CEEEEECCC
Confidence 55677777753 258889998876433321 11122222222232 456677777643 488899876
Q ss_pred Cc
Q 007111 134 LT 135 (617)
Q Consensus 134 ~~ 135 (617)
.+
T Consensus 193 ~~ 194 (366)
T 3k26_A 193 KR 194 (366)
T ss_dssp HH
T ss_pred Cc
Confidence 53
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=95.89 E-value=1.5 Score=43.05 Aligned_cols=233 Identities=9% Similarity=0.057 Sum_probs=115.8
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEcccCCCCCCceEEEEEECCCCcEEEe-ec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVV-EA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g-~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~ 90 (617)
..+++||+.+.++..+... . .......-++++.. + +++|+.+.. ..+++||+. .+...+ ..
T Consensus 46 ~~i~~~d~~~g~~~~~~~~-----~---~~~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~-g~~~~~~~~ 109 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKP-----E---VNGYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD-GTFEEIAKK 109 (314)
T ss_dssp CEEEEECTTTCCEEEEECC-----E---ETTEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT-SCEEECCSB
T ss_pred CEEEEEeCCCCcEEEEEec-----c---cCCCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC-CCEEEEEec
Confidence 4689999888888655420 0 00000112344443 4 788887642 269999998 777665 32
Q ss_pred cCCCCCCcceeEEEEE-CCEEEEEeecCC---------CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE---
Q 007111 91 KGDIPVARSGHTVVRA-SSVLILFGGEDG---------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--- 157 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~-~~~IYv~GG~~~---------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--- 157 (617)
..........+.++.. ++.+|+...... .......+++||+. .+...+.. .... ....+..
T Consensus 110 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~---~~~i~~~~~~ 183 (314)
T 1pjx_A 110 DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQF---PNGIAVRHMN 183 (314)
T ss_dssp CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESS---EEEEEEEECT
T ss_pred cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCC---cceEEEeccc
Confidence 1111111222334333 568887654321 11123579999987 66554421 1111 1233444
Q ss_pred -CCc-EEEEEccCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCC--CcceEEEEE-CCEEEEEecCCCCCccceEEEEE
Q 007111 158 -DDK-NLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSP--RAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 231 (617)
Q Consensus 158 -~~~-~LyV~GG~~~~~~~n~v~~yD~~-t~~W~~~~~~g~~P~~--R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yD 231 (617)
.+. .+|+..... +.+++||+. ++.+.........+.. ..-..++.. ++.+|+..... ..+.+||
T Consensus 184 d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~-----~~i~~~d 253 (314)
T 1pjx_A 184 DGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-----SHIEVFG 253 (314)
T ss_dssp TSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-----TEEEEEC
T ss_pred CCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC-----CEEEEEc
Confidence 333 477765432 469999976 4544322111001111 111233333 57888875322 3588999
Q ss_pred CCCCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 232 ILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 232 l~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.+... ..+. .+ . .....+.+. .+...||+.+..+ +.|++|++...-
T Consensus 254 ~~~g~~~~~~~-~~-----~-~~~~~i~~~-~dg~~l~v~~~~~----~~l~~~~~~~~g 301 (314)
T 1pjx_A 254 PDGGQPKMRIR-CP-----F-EKPSNLHFK-PQTKTIFVTEHEN----NAVWKFEWQRNG 301 (314)
T ss_dssp TTCBSCSEEEE-CS-----S-SCEEEEEEC-TTSSEEEEEETTT----TEEEEEECSSCB
T ss_pred CCCCcEeEEEe-CC-----C-CCceeEEEC-CCCCEEEEEeCCC----CeEEEEeCCCCC
Confidence 874432 2222 11 1 123334443 3334577665432 479999987654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.63 Score=46.22 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=90.7
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCe-EEEEECCCCc-EEEeecCCCCCCCC
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLND-LHMFDLKSLT-WLPLHCTGTGPSPR 149 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~-v~~yD~~t~~-W~~l~~~g~~P~~R 149 (617)
.+++||+.+.+....-. .....+.++.. ++ .+|+.+..+ +. +++|+..... ..... ...++...
T Consensus 109 ~i~v~d~~~~~~~~~~~-----~~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~-~~~~~~~~ 176 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIP-----IPYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTG-QEFISGGT 176 (331)
T ss_dssp EEEEEETTTTEEEEEEE-----CCTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEE-EEEECSSS
T ss_pred cEEEEECCCCCeEEEEE-----CCCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecC-CccccCCC
Confidence 79999999887544331 11222344443 33 577665432 23 6667665432 11110 00011111
Q ss_pred cccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcE---EEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCc
Q 007111 150 SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW---TRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKR 223 (617)
Q Consensus 150 ~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W---~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~ 223 (617)
.-..++.. +++++|+.+..+ +.+.+||+.+++. ......+ ..+ ..++.. ++ .+|+..+..
T Consensus 177 ~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~--~~~---~~~~~spdg~~l~v~~~~~---- 242 (331)
T 3u4y_A 177 RPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVGTN--NLP---GTIVVSRDGSTVYVLTEST---- 242 (331)
T ss_dssp SEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEECS--SCC---CCEEECTTSSEEEEECSSE----
T ss_pred CccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeeccCC--CCC---ceEEECCCCCEEEEEEcCC----
Confidence 12233333 455577766443 4699999988775 2222221 111 123332 34 467664422
Q ss_pred cceEEEEECCCCcEEEeecCCCC---CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 224 HAETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 224 ~~~v~~yDl~~~~W~~l~~~~~~---~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.+++||+.+.+...+...+.. .+........+.+.. +...||+.++.+ +.|.+||+....
T Consensus 243 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~----~~v~v~d~~~~~ 306 (331)
T 3u4y_A 243 -VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANIS----RELKVFTISGKV 306 (331)
T ss_dssp -EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTT----TEEEEEETTSCE
T ss_pred -CEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCC----CcEEEEEecCCc
Confidence 4588999998877554322211 011111112233332 335666665532 478999987654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=95.87 E-value=0.63 Score=46.30 Aligned_cols=216 Identities=10% Similarity=-0.057 Sum_probs=105.4
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+........ +... .+++.. ++++|+..+ ..+++||+.+.+++.+....
T Consensus 35 ~~i~~~d~~~~~~~~~~~-------------~~~~-~~i~~~~dG~l~v~~~--------~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTM-------------DAPV-SSVALRQSGGYVATIG--------TKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp TEEEEEETTTCCEEEEEC-------------SSCE-EEEEEBTTSSEEEEET--------TEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEECCCCcEEEEeC-------------CCce-EEEEECCCCCEEEEEC--------CeEEEEECCCCcEEEEEecC
Confidence 468888888776544332 1111 233333 556665431 36999999999888776321
Q ss_pred C-CCCCcceeEEEEECCEEEEEeecCCC-----CCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEE
Q 007111 93 D-IPVARSGHTVVRASSVLILFGGEDGK-----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIF 165 (617)
Q Consensus 93 ~-~P~~R~~~s~~~~~~~IYv~GG~~~~-----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~ 165 (617)
. .+..+.....+--++.+|+-.-.... ......+|++|+. .+...+.. .+.. -...+.. +++.+|+.
T Consensus 93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~--~~~~---pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD--QVDI---SNGLDWSLDHKIFYYI 166 (297)
T ss_dssp TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE--EESB---EEEEEECTTSCEEEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee--cccc---ccceEEcCCCCEEEEe
Confidence 1 12222222222225677764321110 0123578999875 34433321 1111 1233333 34457777
Q ss_pred ccCCCCCCCCeEEEEEC--CCCcEEEeecCCCCCC-CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 166 GGSSKSKTLNDLYSLDF--ETMIWTRIKIRGFHPS-PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 166 GG~~~~~~~n~v~~yD~--~t~~W~~~~~~g~~P~-~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
.... +.|++||. .++...........+. ...-..++.. ++.+|+..... ..+++||+.+.+....-
T Consensus 167 ~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 167 DSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEEEEE
T ss_pred cCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEEEEE
Confidence 5433 45888876 5665532111100111 1111233333 67888875322 35899999866544332
Q ss_pred cCCCCCCCCCcceEEEEEeecCCcEEEEEcCC
Q 007111 242 TSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 242 ~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
..+ .....++.+...+...|||.-..
T Consensus 237 ~~p------~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 237 KLP------VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ECS------SSBEEEEEEESGGGCEEEEEEBC
T ss_pred ECC------CCCceEEEEeCCCCCEEEEEcCC
Confidence 111 12234445542334567776544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=95.82 E-value=1 Score=46.91 Aligned_cols=222 Identities=12% Similarity=0.095 Sum_probs=104.7
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||+.+.+-...-. . -..+ ..++..++.+++.|+.+ ..++.+|............+
T Consensus 170 ~v~iWd~~~~~~~~~~~----------~-h~~~--v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~-- 228 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMT----------S-HSAR--VGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-- 228 (420)
T ss_dssp CEEEEETTTTEEEEEEC----------C-CSSC--EEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC--
T ss_pred eEEEEEcCCCcEEEEEe----------C-CCCc--eEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEecc--
Confidence 48888988776432221 0 1111 23445566777777653 25777787665433222111
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSK 170 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~ 170 (617)
............++.+++.||.++ .+.++|..+.. +..+........+ -.+.+.. +...+++.||..+
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~~~~~~~~--V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCCSSCSCCSEEECCCSSC--EEEEEECTTCTTEEEEEECTTT
T ss_pred cccceeeeeecCCCCeeeeeeccc------cceEEeeccccccceeeeeecccCCc--eeeeeeCCCcccEEEEEeecCC
Confidence 111111111122456666666544 36777776543 1111100010111 1122222 3443444445433
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
..|..||+.++........ . ....+++.. ++.+++.+|..+ ..+.+||..+..-... ...
T Consensus 301 ----~~I~iwd~~t~~~~~~~~~---~--~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~~v~~--l~g--- 362 (420)
T 4gga_A 301 ----RHIRIWNVCSGACLSAVDA---H--SQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAKVAE--LKG--- 362 (420)
T ss_dssp ----CEEEEEETTTTEEEEEEEC---S--SCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCEEEE--ECC---
T ss_pred ----CEEEEEeCCccccceeecc---c--cceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCcEEEE--EcC---
Confidence 3588999988876654432 1 112233333 455665556543 3488999876543221 111
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
-......+.+.. ++.+++.||.++ .|.++|+....
T Consensus 363 -H~~~V~~l~~sp--dg~~l~S~s~D~----tvriWdv~~~~ 397 (420)
T 4gga_A 363 -HTSRVLSLTMSP--DGATVASAAADE----TLRLWRCFELD 397 (420)
T ss_dssp -CSSCEEEEEECT--TSSCEEEEETTT----EEEEECCSCSS
T ss_pred -CCCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCCCC
Confidence 011233334432 244677788764 57778775543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.82 E-value=1.1 Score=50.76 Aligned_cols=180 Identities=13% Similarity=0.059 Sum_probs=90.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCC-cEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~ 91 (617)
..+.+||..+.+....-.. . ... -.+++.. ++..++.|+.+ ..+.+||+.++ .....-.
T Consensus 77 g~i~vw~~~~~~~~~~~~~----------~-~~~-v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~- 137 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEA----------H-PDY-IRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE- 137 (814)
T ss_dssp SEEEEEETTTCCEEEEEEC----------C-SSC-EEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-
T ss_pred CeEEEEECCCCcEEEEEec----------C-CCC-EEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-
Confidence 3689999988776433220 0 111 1222222 45555666642 25888888776 3322211
Q ss_pred CCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE---CCcEEEEEc
Q 007111 92 GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFG 166 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~G 166 (617)
. ....-.+++.. ++.+++.|+.++ .+.+||+.+..-..... .. ....-..++.. ++. ++++|
T Consensus 138 -~--~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~-~l~~~ 204 (814)
T 3mkq_A 138 -G--HEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLT-TG--QERGVNYVDYYPLPDKP-YMITA 204 (814)
T ss_dssp -C--CSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEE-CC--CTTCCCEEEECCSTTCC-EEEEE
T ss_pred -C--CCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEe-cC--CCCCEEEEEEEECCCCC-EEEEE
Confidence 1 11111223333 456777777543 58899987654222110 11 11111233333 455 77777
Q ss_pred cCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 167 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+.++ .+..||..++........ . ...-.+++.. ++.+++.|+..+ .+.+||+.+.....
T Consensus 205 ~~dg-----~i~~~d~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~dg-----~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 205 SDDL-----TIKIWDYQTKSCVATLEG---H-MSNVSFAVFHPTLPIIISGSEDG-----TLKIWNSSTYKVEK 264 (814)
T ss_dssp CTTS-----EEEEEETTTTEEEEEEEC---C-SSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCSEEE
T ss_pred eCCC-----EEEEEECCCCcEEEEEcC---C-CCCEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEE
Confidence 7654 599999987764433221 1 1111223333 556777777543 48889988765433
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=1.8 Score=43.77 Aligned_cols=170 Identities=10% Similarity=0.062 Sum_probs=84.7
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
.+.+||..+..|...... ...... ....+.+ ++..++.|+.+. .+.+||..+..+..+..
T Consensus 39 ~i~iw~~~~~~~~~~~~~---------~~~h~~-~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~~~~~~~~~-- 100 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVL---------SEGHQR-TVRKVAWSPCGNYLASASFDA------TTCIWKKNQDDFECVTT-- 100 (345)
T ss_dssp CEEEEEEETTEEEEEEEE---------CSSCSS-CEEEEEECTTSSEEEEEETTS------CEEEEEECCC-EEEEEE--
T ss_pred eEEEEEcCCCcceeeeee---------ccccCC-cEEEEEECCCCCEEEEEECCC------cEEEEEccCCCeEEEEE--
Confidence 488888888877533221 000111 1222233 566777777632 36667776766654432
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCccc-EEEEE-CCcEEEEEcc
Q 007111 93 DIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGG 167 (617)
Q Consensus 93 ~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG 167 (617)
+........++.+ ++.+++.|+.++ .+.+||+.+.. +..+.. +....... +++.. ++. +++.|+
T Consensus 101 -~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~-~l~s~s 169 (345)
T 3fm0_A 101 -LEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSV---LNSHTQDVKHVVWHPSQE-LLASAS 169 (345)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEE---ECCCCSCEEEEEECSSSS-CEEEEE
T ss_pred -ccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEE---ecCcCCCeEEEEECCCCC-EEEEEe
Confidence 1111112222222 467777777654 37888887643 333321 11111111 22222 345 777787
Q ss_pred CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC
Q 007111 168 SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR 220 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~ 220 (617)
.++. +..||..+..|......... ...-.+++.. ++..++.|+..+
T Consensus 170 ~d~~-----i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 170 YDDT-----VKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp TTSC-----EEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCc-----EEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCC
Confidence 7653 88899988888755443111 1111233332 566667776543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.89 Score=45.69 Aligned_cols=235 Identities=12% Similarity=0.107 Sum_probs=110.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.++.+|..+.++..+..... ...| ...+..-++++|+.+... ....+++||+.+..++.+... .
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~-------~~~p---~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~--~ 82 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA-------TQNP---TYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTV--V 82 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE-------CSCC---CCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEE--E
T ss_pred EEEEEcCCCCeEEEeeeeec-------cCCc---ceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeee--e
Confidence 47777888888876543110 1011 112222366777765321 124799999988887666531 0
Q ss_pred CCCcceeEEEE-ECC-EEEEEeecCCCCCccCeEEEEECC-CCcEEEe---ecCCCCCCCC----cccEEEEE-CCcEEE
Q 007111 95 PVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPL---HCTGTGPSPR----SNHVAALY-DDKNLL 163 (617)
Q Consensus 95 P~~R~~~s~~~-~~~-~IYv~GG~~~~~~~~~~v~~yD~~-t~~W~~l---~~~g~~P~~R----~~h~a~~~-~~~~Ly 163 (617)
........++. -++ .||+.+.. ...+.+||+. +.....+ ...+..|.+| .-+.+++. +++ +|
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~ 155 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LA 155 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EE
T ss_pred cCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EE
Confidence 11112222333 234 56665421 2457888875 3333333 2112222222 12233333 455 77
Q ss_pred EEccCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEECC--CCcEE
Q 007111 164 IFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDIL--KGEWS 238 (617)
Q Consensus 164 V~GG~~~~~~~n~v~~yD~~-t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl~--~~~W~ 238 (617)
+.+..+ +.+++||+. ++....+.... .+....-..++.. ++ .+|+.+... +.+.+|++. +..+.
T Consensus 156 v~~~~~-----~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 156 VIDLGS-----DKVYVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEETTT-----TEEEEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEE
T ss_pred EEeCCC-----CEEEEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceE
Confidence 765433 368999987 66666543211 1111111123332 44 477765433 234455443 56665
Q ss_pred EeecCCCCC--CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 239 VAITSPSSS--VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 239 ~l~~~~~~~--p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+....... .........+.+.. +...||+.+.. .+.|.+|++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~----~~~v~v~~~~~ 271 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRG----YNTLAVFAVTA 271 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEET----TTEEEEEEECG
T ss_pred EeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCC----CCEEEEEEECC
Confidence 443211111 11112334444543 33467666543 24688888763
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.38 Score=48.35 Aligned_cols=157 Identities=11% Similarity=-0.056 Sum_probs=96.1
Q ss_pred ceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEE
Q 007111 99 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 178 (617)
Q Consensus 99 ~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~ 178 (617)
+...+...++.||+..|..+. +..+|+.+.+-..-- ++..-++.+++..+++ ||+....+ +.++
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~-Ly~ltw~~-----~~v~ 119 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGER-LYQLTWTE-----GLLF 119 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSC-EEEEESSS-----CEEE
T ss_pred ccceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCE-EEEEEccC-----CEEE
Confidence 345666778999999886543 889999988643321 2333455567777777 99986554 5699
Q ss_pred EEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE-eecCCCCCCCCCcceEEE
Q 007111 179 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKGFTLV 257 (617)
Q Consensus 179 ~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~-l~~~~~~~p~~r~~~s~v 257 (617)
+||+.+.+-..--.. +-.+.+++..++.+|+.-| + +.++.+|+.+.+-.. +.......+.... --+.
T Consensus 120 V~D~~Tl~~~~ti~~-----~~eGwGLt~Dg~~L~vSdG-s-----~~l~~iDp~T~~v~~~I~V~~~g~~v~~l-NeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERTTRY-----SGEGWGLCYWNGKLVRSDG-G-----TMLTFHEPDGFALVGAVQVKLRGQPVELI-NELE 187 (268)
T ss_dssp EEETTTTEEEEEEEC-----SSCCCCEEEETTEEEEECS-S-----SEEEEECTTTCCEEEEEECEETTEECCCE-EEEE
T ss_pred EEECCcCcEEEEEeC-----CCceeEEecCCCEEEEECC-C-----CEEEEEcCCCCeEEEEEEeCCCCcccccc-cccE
Confidence 999988765543332 2234566777889999865 2 479999999876433 3221111011010 1112
Q ss_pred EEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 258 LVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 258 ~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.. ++.||+ .-+ ..+.|.+.|+.+.+-
T Consensus 188 ~~----dG~lya-nvw---~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 188 CA----NGVIYA-NIW---HSSDVLEIDPATGTV 213 (268)
T ss_dssp EE----TTEEEE-EET---TCSEEEEECTTTCBE
T ss_pred Ee----CCEEEE-EEC---CCCeEEEEeCCCCcE
Confidence 22 256774 222 246899999988873
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.77 E-value=3.3 Score=46.98 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=69.3
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCC--CCCc---ceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--PVAR---SGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~--P~~R---~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.+.. ..++.+|..+.+ |+.-...... +..+ ...+.++.++.||+... -.
T Consensus 66 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg 131 (689)
T 1yiq_A 66 PIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DG 131 (689)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CC
Confidence 34679999998653 359999998775 8865411100 0000 11234567888887531 24
Q ss_pred eEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEe
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 190 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~ 190 (617)
.++.+|..+.+ |+.-.............+-++.++. +|+-.+......-..++.||..|++ |+..
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 68999998875 8865310000001112233445665 6553222111234579999998876 8765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=1.6 Score=48.38 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=68.7
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEEC-CCCc--EEEeeccCC--CCCC---cceeEEEEECCEEEEEeecCCCCCcc
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVRASSVLILFGGEDGKRRKL 123 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~g~--~P~~---R~~~s~~~~~~~IYv~GG~~~~~~~~ 123 (617)
-++.++.||+.+.. ...++.+|. .+.+ |+.-..... .+.. ....+.++.++.||+... .
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------d 124 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------N 124 (571)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------C
Confidence 34569999998652 125999999 7765 886542110 0000 111234567888888632 2
Q ss_pred CeEEEEECCCCc--EEEeecCCCCCCC-CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 124 NDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 124 ~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
..++.+|..+.+ |+.-. +..+.. ....+-++.++. +|+-.+......-..++.||..+++ |+...
T Consensus 125 g~l~alD~~tG~~~W~~~~--~~~~~~~~~~~~P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEV--CDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp SEEEEEETTTCCEEEEEEC--CCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEECCCCCEEEEecC--CCCCccceeccCCEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 469999998875 88542 111100 111222345665 6654332111123569999998754 77543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.2 Score=52.88 Aligned_cols=150 Identities=8% Similarity=0.047 Sum_probs=73.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+++.||.+. .+.++|+.++....+..... ......++.. -++.+++.|+.++ .+.+||....
T Consensus 176 ~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~ 241 (435)
T 4e54_B 176 NTNQFYASSMEG------TTRLQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGK 241 (435)
T ss_dssp CTTEEEEECSSS------CEEEEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSSS------BEEEEESSSC
T ss_pred CCCEEEEEeCCC------EEEEeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCCC------cEeeeccCcc
Confidence 456667776532 47788998887665542111 1111112222 3567777776544 4788888654
Q ss_pred cEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
.-..+ ......-.++.+ .+..+++.|+.++. |.+||+.+......... ..+....-.+++.. ++.
T Consensus 242 ~~~~~------~~h~~~v~~v~~~p~~~~~~~s~s~d~~-----v~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~spdg~ 309 (435)
T 4e54_B 242 ELWNL------RMHKKKVTHVALNPCCDWFLATASVDQT-----VKIWDLRQVRGKASFLY-SLPHRHPVNAACFSPDGA 309 (435)
T ss_dssp BCCCS------BCCSSCEEEEEECTTCSSEEEEEETTSB-----CCEEETTTCCSSSCCSB-CCBCSSCEEECCBCTTSS
T ss_pred eeEEE------ecccceEEeeeecCCCceEEEEecCcce-----eeEEecccccccceEEE-eeeccccccceeECCCCC
Confidence 32211 111111122333 33337777777643 67788765432111000 00011111122222 556
Q ss_pred EEEEecCCCCCccceEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
.++.|+..+ .+.+||+.+..
T Consensus 310 ~l~s~~~D~-----~i~iwd~~~~~ 329 (435)
T 4e54_B 310 RLLTTDQKS-----EIRVYSASQWD 329 (435)
T ss_dssp EEEEEESSS-----CEEEEESSSSS
T ss_pred eeEEEcCCC-----EEEEEECCCCc
Confidence 667776553 47888887643
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.27 Score=50.00 Aligned_cols=151 Identities=12% Similarity=0.078 Sum_probs=75.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+....... ..+........... ++.+++.|+.++ .+.+||+.+
T Consensus 111 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFD------KTLKVWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETT------SEEEEEETTTTEEEEEE---ECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESSS
T ss_pred CCcEEEEEeCC------CeEEEeeCCCCccceec---cCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCC
Confidence 44577777653 26888999887654443 12222222111111 334677776543 488999887
Q ss_pred CcEEEeecCCCCCCCCcccEEE-EE-CCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCC-----C-----CCCC
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAA-LY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRG-----F-----HPSP 199 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~-~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g-----~-----~P~~ 199 (617)
..-...- ........++ .. ++.++++.|+.++. +..||+.+.. ...+.... . ....
T Consensus 176 ~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 176 GSCSHIL-----QGHRQEILAVSWSPRYDYILATASADSR-----VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp SCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTSC-----EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred cceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCCc-----EEEEECCCCCcccccccccccccceeecccccccc
Confidence 6533221 1111111222 22 33336778877654 8899986543 11111100 0 0011
Q ss_pred CcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 200 RAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 200 R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
..-.+++.. ++..++.|+..+ .+.+||+.+..
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 278 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDN-----RMRLWNSSNGE 278 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCC
T ss_pred CceeEEEEcCCCCEEEEecCCC-----eEEEEECCCCc
Confidence 111222332 556667776553 48899988764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.77 Score=46.32 Aligned_cols=198 Identities=15% Similarity=0.142 Sum_probs=94.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
+++.++.|+.+. .+.+||+.. ..+..+.. +.........+.+ ++.+++.||.++ .+.+||.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence 456677776532 477778742 33443331 1111112222222 456777777654 3778888
Q ss_pred CCCcEEEeecCCCCCCCCcc-cEEEEECC--cEEEEEccCCCCCCCCeEEEEECCC------CcEEEeecCCCCCCCCcc
Q 007111 132 KSLTWLPLHCTGTGPSPRSN-HVAALYDD--KNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~-h~a~~~~~--~~LyV~GG~~~~~~~n~v~~yD~~t------~~W~~~~~~g~~P~~R~~ 202 (617)
.+..|..+.. +...... .++....+ ...++.|+.++. |.+||+.+ ..|........ .....-
T Consensus 183 ~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-----v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v 253 (330)
T 2hes_X 183 YDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSDDST-----VRVWKYMGDDEDDQQEWVCEAILPD-VHKRQV 253 (330)
T ss_dssp ETTEEEEEEE---ECCCSSCEEEEEECCSSSSCEEEEEETTSC-----EEEEEEEEECTTSCEEEEEEEECCS-CCSSCE
T ss_pred CCCCeeEEEE---ccCCCCcEEEEEecCCCCeeEEEEEeCCCe-----EEEEEecCCCccccceeEEeeeccc-ccccce
Confidence 7777766531 1111111 12222222 325667776643 66666543 24555444311 011222
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
.+++...+.+++.||..+ .+.+||..+..|..+...... ........+.+...+++.+++.||.++ .|.
T Consensus 254 ~~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~--h~~~~v~~v~~~~~~~~~~las~s~Dg----~v~ 322 (330)
T 2hes_X 254 YNVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVFAKRALC--HGVYEINVVKWLELNGKTILATGGDDG----IVN 322 (330)
T ss_dssp EEEEECTTSCEEEEETTS-----CEEEEEEETTEEEEEEEESCT--TTTSCEEEEEEC-----CCEEEEETTS----EEE
T ss_pred EEEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEEeccccc--cccceEEEEEEecCCCceEEEEecCCC----cEE
Confidence 333333455666666543 477888888888665321100 111123334443221245677888764 577
Q ss_pred EEECCC
Q 007111 283 VLSIEK 288 (617)
Q Consensus 283 vyd~~~ 288 (617)
+||+++
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 777654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.64 Score=47.19 Aligned_cols=226 Identities=10% Similarity=0.038 Sum_probs=103.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..+.+||+.+......-.. .. .....+.... ++.+++.|+.+ ..+.+||+.+......-
T Consensus 122 ~~i~iwd~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~-- 182 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNF----------EE-TVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHIL-- 182 (408)
T ss_dssp SEEEEEETTTTEEEEEEEC----------SS-CEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEE--
T ss_pred CeEEEeeCCCCccceeccC----------CC-ceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeee--
Confidence 3588899888765433321 11 1111111111 33466666653 24888888766432211
Q ss_pred CCCCCCcceeEEEEE--C-CEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecC-----CCC----CCCCcccE-EEE
Q 007111 92 GDIPVARSGHTVVRA--S-SVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCT-----GTG----PSPRSNHV-AAL 156 (617)
Q Consensus 92 g~~P~~R~~~s~~~~--~-~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~-----g~~----P~~R~~h~-a~~ 156 (617)
........+..+ + ..+++.|+.++ .+.+||+.+.. ...+... ... ......-. ++.
T Consensus 183 ---~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 183 ---QGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp ---CCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred ---cCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 111112222222 2 34777777654 37888887653 2222100 000 11111112 222
Q ss_pred E-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC--CcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 157 Y-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~--R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
. ++. .++.|+.++ .+..||+.+..-............ ..........+..+++++.. ..+.+||+.
T Consensus 254 ~~~~~-~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~ 322 (408)
T 4a11_B 254 TSDGL-HLLTVGTDN-----RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----STIAVYTVY 322 (408)
T ss_dssp CTTSS-EEEEEETTS-----CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----TEEEEEETT
T ss_pred cCCCC-EEEEecCCC-----eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----CEEEEEECc
Confidence 2 445 667777664 399999987654322111001111 11111111223334444332 358899987
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+..-..... . .......+.+.. ++.+++.||.++ .|.+||+.+.+
T Consensus 323 ~~~~~~~~~--~----~~~~v~~~~~s~--~~~~l~s~~~dg----~i~iw~~~~~~ 367 (408)
T 4a11_B 323 SGEQITMLK--G----HYKTVDCCVFQS--NFQELYSGSRDC----NILAWVPSLYE 367 (408)
T ss_dssp TCCEEEEEC--C----CSSCEEEEEEET--TTTEEEEEETTS----CEEEEEECC--
T ss_pred CCcceeeec--c----CCCeEEEEEEcC--CCCEEEEECCCC----eEEEEeCCCCC
Confidence 765433221 0 111233334432 244667787754 57888887755
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=95.56 E-value=1.4 Score=44.60 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=58.0
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECC-EEEEEeecCCCCCccCeEEEEECCCCcE
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTW 136 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W 136 (617)
..+++|.+.........+|.+|+.+.++..+... ....+ .+.+..-++ .||+.+..... .-.-.+|.++..+...
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p--~~l~~spdg~~l~~~~~~~~~-~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANP--SYLIPSADGKFVYSVNEFSKD-QAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCC--CSEEECTTSSEEEEEECCSST-TCEEEEEEEETTTTEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCC--ceEEECCCCCEEEEEEccCCC-CCcEEEEEEeCCCCcE
Confidence 3455677755444445688888899988877632 11111 112222234 56665543211 1122345556666777
Q ss_pred EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 137 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 137 ~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
+.+. ..+..........++++++|+.+..+ ..+.+|++.+
T Consensus 90 ~~~~---~~~~~~~~p~~~~~dg~~l~~~~~~~-----~~v~~~~~~~ 129 (361)
T 3scy_A 90 HLLN---TQKTMGADPCYLTTNGKNIVTANYSG-----GSITVFPIGQ 129 (361)
T ss_dssp EEEE---EEECSSSCEEEEEECSSEEEEEETTT-----TEEEEEEBCT
T ss_pred EEee---EeccCCCCcEEEEECCCEEEEEECCC-----CEEEEEEeCC
Confidence 7663 12211112222223777566665332 3588888864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=2 Score=43.46 Aligned_cols=186 Identities=13% Similarity=0.006 Sum_probs=91.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v-~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.....+.. +.. -++++ .-++++|+... ..+++||+.+.++..+....
T Consensus 71 ~~i~~~d~~~~~~~~~~~-------------~~~-v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 71 RELHELHLASGRKTVHAL-------------PFM-GSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp TEEEEEETTTTEEEEEEC-------------SSC-EEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSS
T ss_pred CEEEEEECCCCcEEEEEC-------------CCc-ceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEeeCC
Confidence 368888888776554432 111 12333 34678877642 24999999999887765211
Q ss_pred C-CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 93 D-IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~-~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
. .+..+.....+--++.+|+.............+|+|| +.+...+.. ... .....+.. +++.+|+.....
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~~~~i~~s~dg~~lyv~~~~~- 200 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---IPNSICFSPDGTTGYFVDTKV- 200 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EES---SEEEEEECTTSCEEEEEETTT-
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---ccCCeEEcCCCCEEEEEECCC-
Confidence 1 1111222222222467776432111111246799999 566655421 111 11133333 454577764332
Q ss_pred CCCCCeEEEEECC--CC-cEE---EeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 171 SKTLNDLYSLDFE--TM-IWT---RIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 171 ~~~~n~v~~yD~~--t~-~W~---~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
+.|++||.. ++ ... .+.... .....-..++.. ++.+|+..... ..+++||+....-..+
T Consensus 201 ----~~I~~~d~~~~~Gl~~~~~~~~~~~~--~~~~~p~gi~~d~~G~lwva~~~~-----~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 201 ----NRLMRVPLDARTGLPTGKAEVFIDST--GIKGGMDGSVCDAEGHIWNARWGE-----GAVDRYDTDGNHIARY 266 (326)
T ss_dssp ----CEEEEEEBCTTTCCBSSCCEEEEECT--TSSSEEEEEEECTTSCEEEEEETT-----TEEEEECTTCCEEEEE
T ss_pred ----CEEEEEEcccccCCcccCceEEEECC--CCCCCCCeeEECCCCCEEEEEeCC-----CEEEEECCCCCEEEEE
Confidence 469999975 44 211 111110 001111223332 56787764211 3588999865444444
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.94 Score=47.72 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=58.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC--CCcceeEEEEEC---CEEEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP--VARSGHTVVRAS---SVLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P--~~R~~~s~~~~~---~~IYv~GG~~~~~~~~~~v~~yD 130 (617)
++..+++|+.+ ..++.|+..+........ ..+. ..........-+ +.+++.|+.++ .+.+||
T Consensus 160 ~~~~l~~~~~~------g~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~------~i~vwd 226 (450)
T 2vdu_B 160 DDTTVIIADKF------GDVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRDE------HIKISH 226 (450)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEeCC------CcEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCCC------cEEEEE
Confidence 45666666542 358888876654321000 0011 111111222235 77888887653 488899
Q ss_pred CCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe
Q 007111 131 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 190 (617)
Q Consensus 131 ~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~ 190 (617)
+.+......-..+ ......+.+.. ++. +++.|+.++ .|.+||+.+++....
T Consensus 227 ~~~~~~~~~~~~~--h~~~v~~~~~s-d~~-~l~s~~~d~-----~v~vwd~~~~~~~~~ 277 (450)
T 2vdu_B 227 YPQCFIVDKWLFG--HKHFVSSICCG-KDY-LLLSAGGDD-----KIFAWDWKTGKNLST 277 (450)
T ss_dssp ESCTTCEEEECCC--CSSCEEEEEEC-STT-EEEEEESSS-----EEEEEETTTCCEEEE
T ss_pred CCCCceeeeeecC--CCCceEEEEEC-CCC-EEEEEeCCC-----eEEEEECCCCcEeee
Confidence 8876644321111 11111122222 566 677777653 599999988775543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.98 Score=45.38 Aligned_cols=202 Identities=13% Similarity=0.120 Sum_probs=98.9
Q ss_pred EEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEE
Q 007111 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 138 (617)
Q Consensus 60 yV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~ 138 (617)
+.+|.+.........+|.+|..+.++..+...... .....++. -++++|+.+.... ...+++||+.+..++.
T Consensus 5 ~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~ 77 (347)
T 3hfq_A 5 ILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHK 77 (347)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEE
T ss_pred EEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEE
Confidence 34565543334445688899988888765422111 11122222 3567777654322 2568999998888776
Q ss_pred eecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECC-CCcEEEeec---CCCCCCCC----cceEEEEE-
Q 007111 139 LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKI---RGFHPSPR----AGCCGVLC- 208 (617)
Q Consensus 139 l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~-t~~W~~~~~---~g~~P~~R----~~ha~v~~- 208 (617)
+... ......-..+++. ++++||+.+..+ +.+.+||+. ++....+.. .+..|.+| .-+.++..
T Consensus 78 ~~~~--~~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp 150 (347)
T 3hfq_A 78 LNTV--VAPGTPPAYVAVDEARQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP 150 (347)
T ss_dssp EEEE--EEESCCCSEEEEETTTTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT
T ss_pred eeee--ecCCCCCEEEEECCCCCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC
Confidence 6320 0001111233333 456566655322 357888874 344444332 11112111 12233333
Q ss_pred CCEEEEEecCCCCCccceEEEEECC-CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
++++|+.+... +.+++||+. ......+...... ...+...+.+.. +...+|+.+..+ +.|.+|++.
T Consensus 151 dg~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~---~g~~p~~~~~sp-dg~~l~v~~~~~----~~v~v~~~~ 217 (347)
T 3hfq_A 151 DNRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVLTME---AGFGPRHLVFSP-DGQYAFLAGELS----SQIASLKYD 217 (347)
T ss_dssp TSCEEEEETTT-----TEEEEEEECTTSCEEEEEEEECC---TTCCEEEEEECT-TSSEEEEEETTT----TEEEEEEEE
T ss_pred CCcEEEEeCCC-----CEEEEEEECCCCcEEEeeeEEcC---CCCCCceEEECC-CCCEEEEEeCCC----CEEEEEEec
Confidence 55677765433 368888887 5555543311100 111222344443 334577765432 356666665
Q ss_pred C
Q 007111 288 K 288 (617)
Q Consensus 288 ~ 288 (617)
.
T Consensus 218 ~ 218 (347)
T 3hfq_A 218 T 218 (347)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.75 Score=45.45 Aligned_cols=185 Identities=8% Similarity=0.047 Sum_probs=84.1
Q ss_pred EEEEEECC--CCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCC
Q 007111 74 SVWTFDTE--TECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSP 148 (617)
Q Consensus 74 ~v~~yd~~--t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~ 148 (617)
.+.+|++. +.++..+.. ++.......++.. ++ .+|+.+ .. ...+.+||+.... ...+.. .+..
T Consensus 61 ~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~-~~-----~~~i~~~d~~~~~~~~~~~~---~~~~ 128 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAE---SALPGSLTHISTDHQGQFVFVGS-YN-----AGNVSVTRLEDGLPVGVVDV---VEGL 128 (343)
T ss_dssp EEEEEEECTTTCCEEEEEE---EECSSCCSEEEECTTSSEEEEEE-TT-----TTEEEEEEEETTEEEEEEEE---ECCC
T ss_pred eEEEEEecCCCCceeeccc---cccCCCCcEEEEcCCCCEEEEEe-cC-----CCeEEEEECCCCcccccccc---ccCC
Confidence 45565554 777776542 1111122233332 34 455554 22 2457888874222 222211 1111
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC-CcEEEee--cCCCCCCCCcceEEEEE-C-CEEEEEecCCCCC
Q 007111 149 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIK--IRGFHPSPRAGCCGVLC-G-TKWYIAGGGSRKK 222 (617)
Q Consensus 149 R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t-~~W~~~~--~~g~~P~~R~~ha~v~~-~-~~IyI~GG~s~~~ 222 (617)
..-+.+++. +++.+|+.+..+ ..+.+||+.+ +.+..+. ... .+....-..++.. + ..+|+.+...
T Consensus 129 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~--- 199 (343)
T 1ri6_A 129 DGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELN--- 199 (343)
T ss_dssp TTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTT---
T ss_pred CCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeecccccc-cCCCCCcceEEECCCCCEEEEEeCCC---
Confidence 112233333 455576665333 3599999987 7666433 110 1111111223332 3 3577766433
Q ss_pred ccceEEEEECC--CCcEEEe---ecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 223 RHAETLIFDIL--KGEWSVA---ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 223 ~~~~v~~yDl~--~~~W~~l---~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
..+.+||+. +..+... ...+.. .........+.+. .+...||+.++.+ +.|.+||+.
T Consensus 200 --~~i~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~s-~dg~~l~v~~~~~----~~i~v~d~~ 261 (343)
T 1ri6_A 200 --SSVDVWELKDPHGNIECVQTLDMMPEN-FSDTRWAADIHIT-PDGRHLYACDRTA----SLITVFSVS 261 (343)
T ss_dssp --TEEEEEESSCTTSCCEEEEEEECSCTT-CCSCCCEEEEEEC-TTSSEEEEEETTT----TEEEEEEEC
T ss_pred --CEEEEEEecCCCCcEEEEeeccccCcc-ccccCCccceEEC-CCCCEEEEEecCC----CEEEEEEEc
Confidence 357888884 3444322 211111 0111222234443 3335676665432 378888887
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=95.47 E-value=2.2 Score=42.16 Aligned_cols=220 Identities=10% Similarity=0.075 Sum_probs=105.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEE-eeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~ 93 (617)
.+.+||..+..-...-. ....+. ......-++++++.|+.+ ..+.+||+.+..-.. +. .
T Consensus 36 ~v~lWd~~~~~~~~~~~----------~~~~~v-~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~---~ 95 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQ----------VTETPV-RAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDFE---A 95 (304)
T ss_dssp EEEEEETTTTEEEEEEE----------CCSSCE-EEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEEE---C
T ss_pred cEEEEECCCCceeEEee----------ccCCcE-EEEEEeCCCCEEEEECCC------CEEEEEECCCCcEEEEEe---C
Confidence 58889988775432211 000111 111222355666777653 268888988775322 21 1
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCCCC
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKS 171 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~ 171 (617)
... .-.+++. -++.+++.|+.++ .+.+||..+..=......+. ...-.+++... +..+++.|+.++
T Consensus 96 -h~~-~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~~~~~~~~h---~~~v~~v~~~p~~~~~l~sgs~D~- 163 (304)
T 2ynn_A 96 -HPD-YIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNWALEQTFEGH---EHFVMCVAFNPKDPSTFASGCLDR- 163 (304)
T ss_dssp -CSS-CEEEEEECSSSSEEEEEETTS------CEEEEEGGGTTEEEEEECCC---CSCEEEEEECTTCTTEEEEEETTS-
T ss_pred -CCC-cEEEEEEcCCCCEEEEECCCC------eEEEEECCCCcchhhhhccc---CCcEEEEEECCCCCCEEEEEeCCC-
Confidence 111 1112222 2456677777654 37888887652111111111 11111222222 333788888774
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 172 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
.|..||+.+..-...... ...+....+... ++.+++.|+.. ..+.++|+.+..-...- .
T Consensus 164 ----~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~--~---- 225 (304)
T 2ynn_A 164 ----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATL--E---- 225 (304)
T ss_dssp ----EEEEEETTCSSCSEEEEC---CCTTCEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEEEEE--E----
T ss_pred ----eEEEEECCCCCccceecc---CCcCcEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccceee--C----
Confidence 488899865432111111 111111222221 34566666654 35888998876532211 1
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
........+.+.. ...+++.|+.++ .|.+||+.+.+
T Consensus 226 ~h~~~v~~~~~~p--~~~~l~s~s~Dg----~i~iWd~~~~~ 261 (304)
T 2ynn_A 226 GHMSNVSFAVFHP--TLPIIISGSEDG----TLKIWNSSTYK 261 (304)
T ss_dssp CCSSCEEEEEECS--SSSEEEEEETTS----CEEEEETTTCC
T ss_pred CCCCCEEEEEECC--CCCEEEEEcCCC----eEEEEECCCCc
Confidence 0111233344432 234677887764 57888887654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.48 Score=45.42 Aligned_cols=193 Identities=10% Similarity=0.029 Sum_probs=96.9
Q ss_pred ceEEEEECCC-CcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t-~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+ .....+... ............-+++.+++++.... ....+|.++..+.....+..
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~-- 127 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVDTG----------FATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK-- 127 (297)
T ss_dssp TEEEEEESSSCCSCEECCCT----------TCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS--
T ss_pred CeEEEEeCCCCCCceEeccc----------cccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec--
Confidence 3688999888 766555431 11111111122225555555553221 24579999998877655542
Q ss_pred CCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
... ...++.. ++ .|++.++.++. ..+|.+|..+.....+. ..+ ... ...+.. +++.+++.+..+
T Consensus 128 --~~~--~~~~~~spdg~~l~~~~~~~~~----~~l~~~~~~~~~~~~~~---~~~-~~~-~~~~~s~dg~~l~~~~~~~ 194 (297)
T 2ojh_A 128 --NLP--SYWHGWSPDGKSFTYCGIRDQV----FDIYSMDIDSGVETRLT---HGE-GRN-DGPDYSPDGRWIYFNSSRT 194 (297)
T ss_dssp --SSS--EEEEEECTTSSEEEEEEEETTE----EEEEEEETTTCCEEECC---CSS-SCE-EEEEECTTSSEEEEEECTT
T ss_pred --CCC--ccceEECCCCCEEEEEECCCCc----eEEEEEECCCCcceEcc---cCC-Ccc-ccceECCCCCEEEEEecCC
Confidence 111 2222222 33 55555554432 36888888887777653 111 111 122222 455344444333
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC------ccceEEEEECCCCcEEEee
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK------RHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~------~~~~v~~yDl~~~~W~~l~ 241 (617)
+ ...+|.+++.+.....+... ......++.. +++.+++++..... ....++++|+.+.....+.
T Consensus 195 ~---~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 195 G---QMQIWRVRVDGSSVERITDS-----AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp S---SCEEEEEETTSSCEEECCCC-----SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred C---CccEEEECCCCCCcEEEecC-----CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 2 35688888877776655332 1111122222 44444444332111 2256899999887655443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=95.44 E-value=1.3 Score=43.83 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=71.0
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++++|+.+.+....-.. +.... .+.++.. +..+|+.++. ...+++||+.+.+....-..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~----------~~~~~-~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVM----------PDKFG-PGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEEC----------SSCCS-SCEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEec----------CCCCC-CceeEECCCCCEEEEEeCC------CCcEEEEeCCCCcEEEEEEc
Confidence 4799999998876433221 11001 1233332 3467777643 13699999998875432211
Q ss_pred CCCCC--CcceeEEEEE-CC-EEEEEeec--CCCCCc---cCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcE
Q 007111 92 GDIPV--ARSGHTVVRA-SS-VLILFGGE--DGKRRK---LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKN 161 (617)
Q Consensus 92 g~~P~--~R~~~s~~~~-~~-~IYv~GG~--~~~~~~---~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~ 161 (617)
+..|. ....+.++.. ++ .+|+.+.. .....+ .+.+++||+.+.+-.+.......| +.-.+++.. +++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGS- 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSC-
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCc-
Confidence 11110 1111223332 34 55554421 000001 257999999874321110001112 222233333 455
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCcEEEe
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRI 190 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~W~~~ 190 (617)
+|+.++ ++++||+.+++....
T Consensus 161 l~~~~~--------~i~~~d~~~~~~~~~ 181 (349)
T 1jmx_B 161 LYVAGP--------DIYKMDVKTGKYTVA 181 (349)
T ss_dssp EEEESS--------SEEEECTTTCCEEEE
T ss_pred EEEccC--------cEEEEeCCCCceecc
Confidence 777432 388999887765543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=3.1 Score=46.90 Aligned_cols=236 Identities=9% Similarity=0.001 Sum_probs=118.3
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCC----------CCceEEEEEECCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSG----------SDRVSVWTFDTETE 83 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~----------~~~~~v~~yd~~t~ 83 (617)
.++++|+.+++....... .....+++.. +++.++++...... .....+|++++.+.
T Consensus 152 ~i~v~d~~tg~~~~~~~~-------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLE-------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp EEEEEETTTTEEEEEEEE-------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred EEEEEECCCCCCCccccc-------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 788899988887654320 0001122222 44444444332210 22456999999887
Q ss_pred cEE--EeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCC------C--cEEEeecCCCCCCCCccc
Q 007111 84 CWS--VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS------L--TWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 84 ~W~--~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t------~--~W~~l~~~g~~P~~R~~h 152 (617)
... .+.. ............. -+++.++++...... ..+.++++|..+ . .|..+.. . .... .
T Consensus 219 ~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~l~~--~-~~~~--~ 290 (710)
T 2xdw_A 219 QSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCD-PVNRLWYCDLQQESNGITGILKWVKLID--N-FEGE--Y 290 (710)
T ss_dssp GGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSS-SCCEEEEEEGGGSSSSSCSSCCCEEEEC--S-SSSC--E
T ss_pred cccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCC-CccEEEEEECcccccccCCccceEEeeC--C-CCcE--E
Confidence 632 2221 1111222222222 244444444332221 257899999976 4 5887742 1 1111 1
Q ss_pred EEEEECCcEEEEEccCCCCCCCCeEEEEECCCC---cEEEeecCCCCCCC-CcceEEEEE-CCEEEEEecCCCCCccceE
Q 007111 153 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSP-RAGCCGVLC-GTKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 153 ~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~---~W~~~~~~g~~P~~-R~~ha~v~~-~~~IyI~GG~s~~~~~~~v 227 (617)
..+..++..||+.+..+. ....++.+|+.+. .|..+... .. ..-..++.. ++.+++.....+ ...+
T Consensus 291 ~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~lv~~~~~~g---~~~l 361 (710)
T 2xdw_A 291 DYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRSNFLVLCYLHDV---KNTL 361 (710)
T ss_dssp EEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEETTTEEEEEEEETT---EEEE
T ss_pred EEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEcCCEEEEEEEECC---EEEE
Confidence 233345555777765432 2457999999876 58877553 12 122234445 677777665432 2568
Q ss_pred EEEECCCCc-EEEeecCCCCCCCCCcceEEEEEeecCCcEEEE-EcCCCCCCCCeEEEEECCCCc
Q 007111 228 LIFDILKGE-WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA-FGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 228 ~~yDl~~~~-W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I-~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+++|+.+.. ...+.. + ......+... .+...|++ +.+. .....++.||+.+.+
T Consensus 362 ~~~~~~~g~~~~~l~~-----~--~~~v~~~~~s-~d~~~l~~~~ss~--~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATGALLKIFPL-----E--VGSVVGYSGQ-KKDTEIFYQFTSF--LSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTCCEEEEECC-----C--SSEEEEEECC-TTCSEEEEEEECS--SCCCEEEEEETTSSS
T ss_pred EEEECCCCCEEEecCC-----C--CceEEEEecC-CCCCEEEEEEeCC--CCCCEEEEEECCCCc
Confidence 999985554 444431 1 1112222222 22234433 3332 234688999987655
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.4 Score=49.29 Aligned_cols=150 Identities=10% Similarity=0.008 Sum_probs=77.7
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++.+++.|+.++ .+.+||+.+.+-...- .+ ..... .+++.. ++..+++.|+.++. |.+||+.+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-~~--h~~~V-~~~~~~~~~~~~l~s~s~D~~-----v~iwd~~~~ 202 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-RA--HAAQV-TCVAASPHKDSVFLSCSEDNR-----ILLWDTRCP 202 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC--CSSCE-EEEEECSSCTTEEEEEETTSC-----EEEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE-cC--cCCce-EEEEecCCCCCceeeeccccc-----ccccccccc
Confidence 567777777654 3889999887644321 11 11111 122222 34337788887754 889999877
Q ss_pred cEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEeec
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHK 262 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~ 262 (617)
+....... ........+++.. ++.+++.|+.++ .+.+||+.+.+- ..+. ........+.+..
T Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~~~~~~-------~h~~~v~~v~fsp- 267 (344)
T 4gqb_B 203 KPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSCVLSSA-------VHSQCVTGLVFSP- 267 (344)
T ss_dssp SCEEECC------CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--CCEEEE-------CCSSCEEEEEECS-
T ss_pred ceeeeeec--ceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcEEEEEc-------CCCCCEEEEEEcc-
Confidence 64433221 0111111223332 456777777543 478899876532 1111 0111233444432
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 263 EKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 263 ~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+...+++.|+.++ .|.+||..+.+
T Consensus 268 ~g~~~lasgs~D~----~i~vwd~~~~~ 291 (344)
T 4gqb_B 268 HSVPFLASLSEDC----SLAVLDSSLSE 291 (344)
T ss_dssp SSSCCEEEEETTS----CEEEECTTCCE
T ss_pred CCCeEEEEEeCCC----eEEEEECCCCc
Confidence 2235667777654 47888877654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=95.42 E-value=1.6 Score=44.85 Aligned_cols=200 Identities=13% Similarity=0.116 Sum_probs=99.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc--CCCCCCcceeEEEEE--CC-EEEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRA--SS-VLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~P~~R~~~s~~~~--~~-~IYv~GG~~~~~~~~~~v~~yD 130 (617)
++.+++.|+.+ ..+.+||..+..+...... ..+........++.+ ++ .+++.|+.++ .+.+||
T Consensus 93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWD 160 (402)
T ss_dssp CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEE
Confidence 56777777753 2588888877643110000 000011111122222 23 5777777654 489999
Q ss_pred CCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 007111 131 LKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 208 (617)
Q Consensus 131 ~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~- 208 (617)
+.+.+....-. .......-.+++.. ++. +++.|+.++ .+.+||+.+.........+ ....+. ..++..
T Consensus 161 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 230 (402)
T 2aq5_A 161 VGTGAAVLTLG--PDVHPDTIYSVDWSRDGA-LICTSCRDK-----RVRVIEPRKGTVVAEKDRP-HEGTRP-VHAVFVS 230 (402)
T ss_dssp TTTTEEEEEEC--TTTCCSCEEEEEECTTSS-CEEEEETTS-----EEEEEETTTTEEEEEEECS-SCSSSC-CEEEECS
T ss_pred CCCCCccEEEe--cCCCCCceEEEEECCCCC-EEEEEecCC-----cEEEEeCCCCceeeeeccC-CCCCcc-eEEEEcC
Confidence 99887654310 00111111223333 455 677777653 5999999887655433111 111112 233333
Q ss_pred CCEEEEEecCCCCCccceEEEEECCCCcE--EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILKGEW--SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~~~W--~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
++.+++.|... .....+.+||+.+..- .... .. .......+.+. .+...|++.|+.++ .|.+||+
T Consensus 231 ~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~-~~-----~~~~v~~~~~s-~~~~~l~~~g~~dg----~i~i~d~ 297 (402)
T 2aq5_A 231 EGKILTTGFSR--MSERQVALWDTKHLEEPLSLQE-LD-----TSSGVLLPFFD-PDTNIVYLCGKGDS----SIRYFEI 297 (402)
T ss_dssp TTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEE-CC-----CCSSCEEEEEE-TTTTEEEEEETTCS----CEEEEEE
T ss_pred CCcEEEEeccC--CCCceEEEEcCccccCCceEEe-cc-----CCCceeEEEEc-CCCCEEEEEEcCCC----eEEEEEe
Confidence 67777776311 1124688999876431 1111 01 11123333343 33456767776543 6888888
Q ss_pred CCCc
Q 007111 287 EKNE 290 (617)
Q Consensus 287 ~~~~ 290 (617)
.+.+
T Consensus 298 ~~~~ 301 (402)
T 2aq5_A 298 TSEA 301 (402)
T ss_dssp CSST
T ss_pred cCCC
Confidence 7655
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.39 E-value=1.1 Score=45.76 Aligned_cols=188 Identities=10% Similarity=0.053 Sum_probs=101.0
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC-CCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P-~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
.+++.|+.+. .+.+||+.+....... ... ....-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~ 151 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIRG------ATTLRDFSGS 151 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETTT------EEEEEETTSC
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCCC------EEEEEECCCC
Confidence 5777777632 5888999887765553 111 11122233333 346777776543 5889999987
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK- 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~- 211 (617)
....+.. .......-.+++.. ++. +++.|+.++ .+..||+.......+... ...-.+++.. ++.
T Consensus 152 ~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 152 VIQVFAK--TDSWDYWYCCVDVSVSRQ-MLATGDSTG-----RLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEEEC--CCCSSCCEEEEEEETTTT-EEEEEETTS-----EEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTT
T ss_pred ceEEEec--cCCCCCCeEEEEECCCCC-EEEEECCCC-----CEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCC
Confidence 7766641 11111111233333 455 777777663 599999865444443321 1112233333 344
Q ss_pred EEEEecCCCCCccceEEEEECCC----CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 212 WYIAGGGSRKKRHAETLIFDILK----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~----~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
+++.|+.. ..+.+||+.+ ........ .......+.+... ++.+++.|+.+ ..|.+||+.
T Consensus 219 ~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~s~~-~~~~l~~~~~d----~~i~iwd~~ 281 (383)
T 3ei3_B 219 LMATSSVD-----ATVKLWDLRNIKDKNSYIAEMP-------HEKPVNAAYFNPT-DSTKLLTTDQR----NEIRVYSSY 281 (383)
T ss_dssp EEEEEETT-----SEEEEEEGGGCCSTTCEEEEEE-------CSSCEEEEEECTT-TSCEEEEEESS----SEEEEEETT
T ss_pred EEEEEeCC-----CEEEEEeCCCCCcccceEEEec-------CCCceEEEEEcCC-CCCEEEEEcCC----CcEEEEECC
Confidence 77777654 3588898876 33322211 1123334444321 24466677764 368999987
Q ss_pred CCc
Q 007111 288 KNE 290 (617)
Q Consensus 288 ~~~ 290 (617)
+.+
T Consensus 282 ~~~ 284 (383)
T 3ei3_B 282 DWS 284 (383)
T ss_dssp BTT
T ss_pred CCc
Confidence 654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.27 Score=50.01 Aligned_cols=140 Identities=11% Similarity=0.118 Sum_probs=64.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g 92 (617)
.+.+||+.+..|..+... ......-.++... ++.+++.|+.+. .+.+||+.+.. |.....
T Consensus 34 ~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~-- 95 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTF----------SDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQTLV-- 95 (377)
T ss_dssp CBCEEEEETTEEEECCCB----------CCCSSCEEEEEECTTTCCEEEEETTS------SEEEC------CCCCEEE--
T ss_pred EEEEEEccCCceEEEEEE----------ecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeeeeE--
Confidence 578888888888766652 1111111233332 456777777532 47888887766 443331
Q ss_pred CCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCcccEEEEECCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~ 169 (617)
+........++.+ ++.+++.|+.++ .+.+||..+.. |..+... ..+....-.+++...+..+++.|+.+
T Consensus 96 -~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 96 -LLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -CCCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEE-CSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred -ecccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEe-ecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 1111122222222 456777777644 37788877664 3222100 11111112233333333377778776
Q ss_pred CCCCCCeEEEEECCCC
Q 007111 170 KSKTLNDLYSLDFETM 185 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~ 185 (617)
+ .+..||+.+.
T Consensus 168 ~-----~i~iwd~~~~ 178 (377)
T 3dwl_C 168 R-----KAYVLSAYVR 178 (377)
T ss_dssp S-----CEEEEEECCS
T ss_pred C-----EEEEEEEEec
Confidence 4 3888887543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.98 Score=45.05 Aligned_cols=240 Identities=10% Similarity=0.008 Sum_probs=114.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+++||+.+.++..+... ... .-++++.. ++++|+.+.... .....+++||+.+.....+-.
T Consensus 66 ~~i~~~d~~~~~~~~~~~~-----------~~~-~~~~i~~~~dg~l~v~~~~~~--~~~~~i~~~d~~~~~~~~~~~-- 129 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVS-----------HKA-NPAAIKIHKDGRLFVCYLGDF--KSTGGIFAATENGDNLQDIIE-- 129 (333)
T ss_dssp CEEEEECTTTCCEEEEEEC-----------SSS-SEEEEEECTTSCEEEEECTTS--SSCCEEEEECTTSCSCEEEEC--
T ss_pred CEEEEEeCCCCcEEEEeeC-----------CCC-CcceEEECCCCcEEEEeCCCC--CCCceEEEEeCCCCEEEEEEc--
Confidence 3588888888877655320 011 12344443 567887753321 112479999999887653321
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
..........++.. ++.+|+.............+++||+.+.+...+.. ... .....+.. +++.+|+.....
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~~~~i~~~~dg~~l~v~~~~~- 203 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---VANGIALSTDEKVLWVTETTA- 203 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---SEEEEEECTTSSEEEEEEGGG-
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---cccceEECCCCCEEEEEeCCC-
Confidence 11122222233333 56787754322111124579999998877765531 111 11233333 344577764322
Q ss_pred CCCCCeEEEEECCC--CcEEEeecC--CCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC
Q 007111 171 SKTLNDLYSLDFET--MIWTRIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 245 (617)
Q Consensus 171 ~~~~n~v~~yD~~t--~~W~~~~~~--g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~ 245 (617)
+.+++||+.+ .....+... ...+....-..++.. ++.+|+..... ..+++||+....-..+.. +.
T Consensus 204 ----~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-----~~v~~~d~~g~~~~~~~~-~~ 273 (333)
T 2dg1_A 204 ----NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLVFNKRGYPIGQILI-PG 273 (333)
T ss_dssp ----TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEEECTTSCEEEEEEC-TT
T ss_pred ----CeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC-----CEEEEECCCCCEEEEEEc-CC
Confidence 4689999854 233322100 000111111223332 56788775322 358899986554444431 11
Q ss_pred CCCCCC-cceEEEEEeecCCcEEEEEcCCCCC-CCCeEEEEECC
Q 007111 246 SSVTSN-KGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIE 287 (617)
Q Consensus 246 ~~p~~r-~~~s~v~v~~~~~~~L~I~GG~~~~-~~~dV~vyd~~ 287 (617)
. ..+. .....+.+. .+...||+.+..... ....++.+++.
T Consensus 274 ~-~~g~~~~~~~~~~~-~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 274 R-DEGHMLRSTHPQFI-PGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp G-GGTCSCBCCEEEEC-TTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred C-ccccccCcceEEEC-CCCCEEEEEeCccCCCCCceEEEEecc
Confidence 0 0000 012333443 333567765443221 13456777654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=4.8 Score=45.36 Aligned_cols=124 Identities=11% Similarity=0.054 Sum_probs=69.5
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCC--CC---CcceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--PV---ARSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~--P~---~R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
-++.++.||+.... ..++.+|..+.+ |+.-...... +. .....+.++.++.||+... ..
T Consensus 62 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg 127 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DG 127 (668)
T ss_dssp CEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CC
Confidence 34679999998653 369999988775 8865421100 00 0011234556888887531 24
Q ss_pred eEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
.++.+|..+.+ |+.-.. ..........+-++.++. +|+..+.........++.||..+++ |+...
T Consensus 128 ~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTT-DPAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEEEETTTCCEEEEEECS-CTTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCCEeeeeccC-CCCCcceecCCCEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 69999998876 986421 110111112233445665 6553222111234579999998765 87643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.88 Score=47.56 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=78.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+++.||.+. .+.+||..+......- ...... -.+++. .++.+++.||.++. +.+||+.+.
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l---~~h~~~-V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTL---KGHTDS-VQDISFDHSGKLLASCSADMT------IKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEE---CCCSSC-EEEEEECTTSSEEEEEETTSC------CCEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE---eccCCc-EEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC
Confidence 356777777532 4888888876543221 111111 112222 24677888877654 567888766
Q ss_pred cEEEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 135 TWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
.-... +......- +++.. ++. .++.|+.++ .+..||+.++.....-.. ....-.++... ++.
T Consensus 183 ~~~~~-----~~~h~~~V~~v~~~p~~~-~l~s~s~D~-----~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 183 ECIRT-----MHGHDHNVSSVSIMPNGD-HIVSASRDK-----TIKMWEVQTGYCVKTFTG----HREWVRMVRPNQDGT 247 (410)
T ss_dssp CEEEC-----CCCCSSCEEEEEECSSSS-EEEEEETTS-----EEEEEETTTCCEEEEEEC----CSSCEEEEEECTTSS
T ss_pred ceeEE-----EcCCCCCEEEEEEeCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEEeC----CCccEEEEEECCCCC
Confidence 54322 11111111 22233 445 677888764 499999988765433221 11111222222 566
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+++.|+..+ .+.+||+.+.....
T Consensus 248 ~l~s~s~D~-----~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 248 LIASCSNDQ-----TVRVWVVATKECKA 270 (410)
T ss_dssp EEEEEETTS-----CEEEEETTTCCEEE
T ss_pred EEEEEcCCC-----eEEEEECCCCceee
Confidence 777777553 37788887765443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=2.3 Score=41.02 Aligned_cols=215 Identities=11% Similarity=-0.026 Sum_probs=113.2
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+. ..+...... .....-++++.. ++.+|+.... ...+++||+. ..+..+.
T Consensus 36 ~~v~~~d~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~--- 93 (299)
T 2z2n_A 36 NMISCINLD-GKITEYPLP-----------TPDAKVMCLTISSDGEVWFTENA------ANKIGRITKK-GIIKEYT--- 93 (299)
T ss_dssp TEEEEECTT-CCEEEEECS-----------STTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEE---
T ss_pred CcEEEEcCC-CCeEEecCC-----------cccCceeeEEECCCCCEEEeCCC------CCeEEEECCC-CcEEEEe---
Confidence 358888888 666654420 011112344443 5678887532 1258999986 5565554
Q ss_pred CCC-CCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC
Q 007111 93 DIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P-~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~ 170 (617)
+| .....+.++.. ++.+|+.... ...+++||+ +.+........ ....-..++...+..+|+.....
T Consensus 94 -~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~- 161 (299)
T 2z2n_A 94 -LPNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTENQN- 161 (299)
T ss_dssp -CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEETTT-
T ss_pred -CCCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeCCC-
Confidence 22 22233444444 4688876432 246899998 66666553111 11122233333333377754322
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 249 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~ 249 (617)
+.+++||+ ++.+..+.... ....-.+++.. ++.+|+..... ..+++||+ +..+..... + .
T Consensus 162 ----~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~-~----~ 222 (299)
T 2z2n_A 162 ----NAIGRITE-SGDITEFKIPT---PASGPVGITKGNDDALWFVEIIG-----NKIGRITT-SGEITEFKI-P----T 222 (299)
T ss_dssp ----TEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEEC-S----S
T ss_pred ----CEEEEEcC-CCcEEEeeCCC---CCCcceeEEECCCCCEEEEccCC-----ceEEEECC-CCcEEEEEC-C----C
Confidence 45999999 77777653311 11112233333 56788875322 35899999 676665432 1 1
Q ss_pred CCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 250 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 250 ~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
.......+.+.. ++.||+.... .+.|.+||+.
T Consensus 223 ~~~~~~~i~~~~--~g~l~v~~~~----~~~i~~~d~~ 254 (299)
T 2z2n_A 223 PNARPHAITAGA--GIDLWFTEWG----ANKIGRLTSN 254 (299)
T ss_dssp TTCCEEEEEECS--TTCEEEEETT----TTEEEEEETT
T ss_pred CCCCceeEEECC--CCCEEEeccC----CceEEEECCC
Confidence 112223334432 3457765422 2368888873
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.64 Score=47.23 Aligned_cols=191 Identities=9% Similarity=0.067 Sum_probs=97.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.||.+. .+.+||..+..|....... ........++.+ ++.+++.|+.++. +.+||..+
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~s~D~~------v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGNYLASASFDAT------TCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEEC--SSCSSCEEEEEECTTSSEEEEEETTSC------EEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeec--cccCCcEEEEEECCCCCEEEEEECCCc------EEEEEccC
Confidence 567777777632 4777787788775433110 111111222222 4677778876553 67788777
Q ss_pred CcEEEeecCCCCCCCCcc-cEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE-C
Q 007111 134 LTWLPLHCTGTGPSPRSN-HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC-G 209 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~-h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R~~ha~v~~-~ 209 (617)
..+..+.. +...... .+++.. ++. +++.|+.++. +.+||+.+. .+..+...... ...-.+++.. +
T Consensus 93 ~~~~~~~~---~~~h~~~v~~v~~sp~~~-~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~ 161 (345)
T 3fm0_A 93 DDFECVTT---LEGHENEVKSVAWAPSGN-LLATCSRDKS-----VWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPS 161 (345)
T ss_dssp C-EEEEEE---ECCCSSCEEEEEECTTSS-EEEEEETTSC-----EEEEEECTTSCEEEEEEECCC--CSCEEEEEECSS
T ss_pred CCeEEEEE---ccCCCCCceEEEEeCCCC-EEEEEECCCe-----EEEEECCCCCCeEEEEEecCc--CCCeEEEEECCC
Confidence 76654421 1111111 122333 455 7788887653 888888654 33333322111 1111222332 5
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
+.+++.|+..+ .+.+||.....|..+..... .......+.+.. ++.+++.|+.++ .|.+|+.
T Consensus 162 ~~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~----h~~~v~~l~~sp--~g~~l~s~s~D~----~v~iW~~ 223 (345)
T 3fm0_A 162 QELLASASYDD-----TVKLYREEEDDWVCCATLEG----HESTVWSLAFDP--SGQRLASCSDDR----TVRIWRQ 223 (345)
T ss_dssp SSCEEEEETTS-----CEEEEEEETTEEEEEEEECC----CSSCEEEEEECT--TSSEEEEEETTS----CEEEEEE
T ss_pred CCEEEEEeCCC-----cEEEEEecCCCEEEEEEecC----CCCceEEEEECC--CCCEEEEEeCCC----eEEEecc
Confidence 66777776553 37788888887765432221 111233344432 344677787654 3566654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.18 Score=52.01 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=90.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce-eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++++++.|+.+.....-..++.|+..+..-...... .......+ .+++.. ++.+ +.|+.++ .+.+||+.+
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~-l~~s~dg------~v~lWd~~~ 124 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGI-LVASDSG------AVELWEILE 124 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEE-EEEETTS------CEEEC----
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCE-EEEECCC------EEEEeeccc
Confidence 677887777533222224688887665431110000 00001111 122333 3454 4555432 478888876
Q ss_pred CcEEEeecCCCCCCCCccc-----EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 134 LTWLPLHCTGTGPSPRSNH-----VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h-----~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
.+-..+ ......+| +++.. +++ .++.|+.++. |.+||+.++.....-.. ... .-.+++.
T Consensus 125 ~~~~~~-----~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~-----v~iwd~~~~~~~~~~~~---h~~-~v~~v~~ 189 (357)
T 4g56_B 125 KESLLV-----NKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFS-----VKVWDLSQKAVLKSYNA---HSS-EVNCVAA 189 (357)
T ss_dssp ----CC-----CCEEECCCSSCEEEEEECSSSS-EEEEEETTSC-----EEEEETTTTEEEEEECC---CSS-CEEEEEE
T ss_pred cceeEE-----EeeccCCCCCCEEEEEECCCCC-EEEEEeCCCe-----EEEEECCCCcEEEEEcC---CCC-CEEEEEE
Confidence 543221 11111111 22233 455 7778887654 89999988765543221 111 1122333
Q ss_pred E--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 208 C--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 208 ~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
. ++.+++.||..+ .+.+||+.+....... ..........++.+. .+.+.+++.|+.++ .|.+||
T Consensus 190 s~~~~~~~~s~~~dg-----~v~~wd~~~~~~~~~~----~~~~~~~~v~~v~~s-p~~~~~la~g~~d~----~i~~wd 255 (357)
T 4g56_B 190 CPGKDTIFLSCGEDG-----RILLWDTRKPKPATRI----DFCASDTIPTSVTWH-PEKDDTFACGDETG----NVSLVN 255 (357)
T ss_dssp CTTCSSCEEEEETTS-----CEEECCTTSSSCBCBC----CCTTCCSCEEEEEEC-TTSTTEEEEEESSS----CEEEEE
T ss_pred ccCCCceeeeeccCC-----ceEEEECCCCceeeee----eeccccccccchhhh-hcccceEEEeeccc----ceeEEE
Confidence 2 345777777553 3778888765422211 111111223333443 23355777887653 588999
Q ss_pred CCCCc
Q 007111 286 IEKNE 290 (617)
Q Consensus 286 ~~~~~ 290 (617)
+.+.+
T Consensus 256 ~~~~~ 260 (357)
T 4g56_B 256 IKNPD 260 (357)
T ss_dssp SSCGG
T ss_pred CCCCc
Confidence 87654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.14 E-value=2.8 Score=41.54 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=90.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE---ECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~---~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++..++.|+.+ ..+.+||+.+........ ... .-.++.. .++.+++.|+.++ .+.+||+.
T Consensus 97 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~~l~~~~~dg------~i~vwd~~ 159 (368)
T 3mmy_A 97 DGSKVFTASCD------KTAKMWDLSSNQAIQIAQ---HDA--PVKTIHWIKAPNYSCVMTGSWDK------TLKFWDTR 159 (368)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE---CSS--CEEEEEEEECSSCEEEEEEETTS------EEEEECSS
T ss_pred CCCEEEEEcCC------CcEEEEEcCCCCceeecc---ccC--ceEEEEEEeCCCCCEEEEccCCC------cEEEEECC
Confidence 55666676653 268899998887655431 111 1122222 2467777777643 48899987
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC-
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGT- 210 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~-~~~- 210 (617)
+.+-...- ..+. .. .+...... .+++++.++ .+..||.....-....... +.......... .+.
T Consensus 160 ~~~~~~~~---~~~~--~~-~~~~~~~~-~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 160 SSNPMMVL---QLPE--RC-YCADVIYP-MAVVATAER-----GLIVYQLENQPSEFRRIES--PLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp CSSCSEEE---ECSS--CE-EEEEEETT-EEEEEEGGG-----CEEEEECSSSCEEEEECCC--SCSSCEEEEEEEECTT
T ss_pred CCcEEEEE---ecCC--Cc-eEEEecCC-eeEEEeCCC-----cEEEEEeccccchhhhccc--cccCCCceEEEcccCC
Confidence 76522211 1111 11 22223334 334444332 4788888655432222211 11121222222 222
Q ss_pred ---EEEEEecCCCCCccceEEEEECCCCcE----EEeecCC-CCC----CCCCcceEEEEEeecCCcEEEEEcCCCCCCC
Q 007111 211 ---KWYIAGGGSRKKRHAETLIFDILKGEW----SVAITSP-SSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 278 (617)
Q Consensus 211 ---~IyI~GG~s~~~~~~~v~~yDl~~~~W----~~l~~~~-~~~----p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~ 278 (617)
..++.|+.. ..+.+||+....- ..+.... ... +........+.+.. ++.+++.||.++
T Consensus 226 ~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg--- 295 (368)
T 3mmy_A 226 NKPTGFALGSIE-----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP--VHGTLATVGSDG--- 295 (368)
T ss_dssp SCEEEEEEEETT-----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT--TTCCEEEEETTS---
T ss_pred CCCCeEEEecCC-----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec--CCCEEEEEccCC---
Confidence 336666654 3477888765421 1111000 000 00000233334432 344677787654
Q ss_pred CeEEEEECCCCc
Q 007111 279 NQVEVLSIEKNE 290 (617)
Q Consensus 279 ~dV~vyd~~~~~ 290 (617)
.|.+||+.+.+
T Consensus 296 -~i~iwd~~~~~ 306 (368)
T 3mmy_A 296 -RFSFWDKDART 306 (368)
T ss_dssp -CEEEEETTTTE
T ss_pred -eEEEEECCCCc
Confidence 58899988764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=1.4 Score=43.80 Aligned_cols=196 Identities=10% Similarity=0.028 Sum_probs=95.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..-...- ........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 43 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~ 105 (369)
T 3zwl_B 43 EGDLLFSCSKD------SSASVWYSLNGERLGTL-----DGHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSN 105 (369)
T ss_dssp TSCEEEEEESS------SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTT
T ss_pred CCCEEEEEeCC------CEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCC
Confidence 45666677653 25888898877643322 111112222222 45666777654 3589999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc----EEEeecCCC----CCCCC-cce
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGF----HPSPR-AGC 203 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~----W~~~~~~g~----~P~~R-~~h 203 (617)
.+....-. ....-.+++.. ++. .++.|+.+.......+..||+.+.. +........ ..... ...
T Consensus 106 ~~~~~~~~-----~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 106 GQCVATWK-----SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp CCEEEEEE-----CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CcEEEEee-----cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 77554421 11111233333 344 5555555422233468888775432 221111000 00110 122
Q ss_pred EEEEE-CCEEEEEecCCCCCccceEEEEECCC-CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeE
Q 007111 204 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 281 (617)
Q Consensus 204 a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~-~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV 281 (617)
+++.. ++..+++|+.. ..+.+||+.+ ......... .......+.+.. ++.+++.|+.++ .|
T Consensus 180 ~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~~~d~----~i 242 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSIDL------HEKSISDMQFSP--DLTYFITSSRDT----NS 242 (369)
T ss_dssp EEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEEC------CSSCEEEEEECT--TSSEEEEEETTS----EE
T ss_pred EEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEec------CCCceeEEEECC--CCCEEEEecCCc----eE
Confidence 22222 55666776654 3588999987 332222110 112233334432 244566676543 68
Q ss_pred EEEECCCCcc
Q 007111 282 EVLSIEKNES 291 (617)
Q Consensus 282 ~vyd~~~~~W 291 (617)
.+||+.+.+.
T Consensus 243 ~v~d~~~~~~ 252 (369)
T 3zwl_B 243 FLVDVSTLQV 252 (369)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCce
Confidence 8999887653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.46 Score=53.51 Aligned_cols=105 Identities=6% Similarity=-0.074 Sum_probs=51.1
Q ss_pred eEEEEECCC-CcEEEeecCCCCCCCCc-ceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcc
Q 007111 176 DLYSLDFET-MIWTRIKIRGFHPSPRA-GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKG 253 (617)
Q Consensus 176 ~v~~yD~~t-~~W~~~~~~g~~P~~R~-~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~ 253 (617)
.++++|+.+ +....+.... +.... .......+..|++... ........++++|+.+.....+.......... .
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~ 338 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGK--EQDIYLARVNWRDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVP--L 338 (741)
T ss_dssp EEEEECSSTTCCCEEECCCS--CSSEEEEEEEEEETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--C
T ss_pred EEEEEECCCCCceEEecCCC--CcceEEEEEEeCCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCC--c
Confidence 789999988 7755543210 11111 1111223444554433 22233467999999988876654211110000 0
Q ss_pred eEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 254 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 254 ~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
...+.+..+ +.+++.++.++ ...+|.+|....
T Consensus 339 ~~~~~~spd--g~~~~~~~~~g--~~~l~~~~~~~~ 370 (741)
T 2ecf_A 339 HNSLRFLDD--GSILWSSERTG--FQHLYRIDSKGK 370 (741)
T ss_dssp CSCCEECTT--SCEEEEECTTS--SCEEEEECSSSC
T ss_pred CCceEECCC--CeEEEEecCCC--ccEEEEEcCCCC
Confidence 112233333 23555665443 357888886544
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.09 E-value=3.4 Score=42.02 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=78.9
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
+..++.|+.+ ..+.+||+.+.+....- .+. ... -.+.... ++. +++.|+.++. +..||+.+
T Consensus 166 ~~~l~t~s~D------~~v~lwd~~~~~~~~~~-~~h--~~~-v~~~~~~~~~~g~-~l~sgs~Dg~-----v~~wd~~~ 229 (354)
T 2pbi_B 166 DMQILTASGD------GTCALWDVESGQLLQSF-HGH--GAD-VLCLDLAPSETGN-TFVSGGCDKK-----AMVWDMRS 229 (354)
T ss_dssp SSEEEEEETT------SEEEEEETTTCCEEEEE-ECC--SSC-EEEEEECCCSSCC-EEEEEETTSC-----EEEEETTT
T ss_pred CCEEEEEeCC------CcEEEEeCCCCeEEEEE-cCC--CCC-eEEEEEEeCCCCC-EEEEEeCCCe-----EEEEECCC
Confidence 4455566543 35889999887654321 011 111 0111221 235 7888887754 99999988
Q ss_pred CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecC
Q 007111 185 MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE 263 (617)
Q Consensus 185 ~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~ 263 (617)
+.....-.. ....-.+++.. ++..++.|+..+ .+.+||+....-...... .........+.+..
T Consensus 230 ~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~----~~~~~~~~~~~~s~-- 294 (354)
T 2pbi_B 230 GQCVQAFET----HESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSK----ESIIFGASSVDFSL-- 294 (354)
T ss_dssp CCEEEEECC----CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC----TTCCSCEEEEEECT--
T ss_pred CcEEEEecC----CCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC----CCcccceeEEEEeC--
Confidence 876543221 11111233333 566777777553 488999887653332211 11122334444443
Q ss_pred CcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 264 KDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 264 ~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+.+++.|+.++ .|.+||+.+.+
T Consensus 295 ~g~~l~~g~~d~----~i~vwd~~~~~ 317 (354)
T 2pbi_B 295 SGRLLFAGYNDY----TINVWDVLKGS 317 (354)
T ss_dssp TSSEEEEEETTS----CEEEEETTTCS
T ss_pred CCCEEEEEECCC----cEEEEECCCCc
Confidence 344667777543 58889986654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=2.1 Score=48.30 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=109.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCC----------CccC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKR----------RKLN 124 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~----------~~~~ 124 (617)
+++.++|+... .+.....++++|+.++....... +.... ...+.. +++.++++..+... ....
T Consensus 135 Dg~~la~~~~~-~G~~~~~i~v~d~~tg~~~~~~~----~~~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (710)
T 2xdw_A 135 DGEYFAYGLSA-SGSDWVTIKFMKVDGAKELPDVL----ERVKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ 208 (710)
T ss_dssp TSSEEEEEEEE-TTCSCEEEEEEETTTTEEEEEEE----EEECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred CCCEEEEEEcC-CCCceEEEEEEECCCCCCCcccc----cCccc-ceEEEEeCCCEEEEEEECCccccccccccccCCCC
Confidence 56655555331 22333589999999998766431 11111 122222 44444444433220 2346
Q ss_pred eEEEEECCCCcEE--EeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC------C--cEEEeecC
Q 007111 125 DLHMFDLKSLTWL--PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET------M--IWTRIKIR 193 (617)
Q Consensus 125 ~v~~yD~~t~~W~--~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t------~--~W~~~~~~ 193 (617)
.++++++.+.... .+- ... ..+......... ++++|++..... ....++++.+|+.+ . .|..+...
T Consensus 209 ~v~~~~l~t~~~~~~~v~-~~~-~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~ 285 (710)
T 2xdw_A 209 KLYYHVLGTDQSEDILCA-EFP-DEPKWMGGAELSDDGRYVLLSIREG-CDPVNRLWYCDLQQESNGITGILKWVKLIDN 285 (710)
T ss_dssp EEEEEETTSCGGGCEEEE-CCT-TCTTCEEEEEECTTSCEEEEEEECS-SSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred EEEEEECCCCcccceEEe-ccC-CCCeEEEEEEEcCCCCEEEEEEEcc-CCCccEEEEEECcccccccCCccceEEeeCC
Confidence 6999999887632 221 111 112222233333 455454443322 22257899999976 4 57777542
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC---cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEE
Q 007111 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG---EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 270 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~---~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~ 270 (617)
.... .......++.+|+.+... .....++.+|+.+. .|..+.... .......+.+. +++.+++.
T Consensus 286 ---~~~~-~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~~~~--~~~~lv~~ 352 (710)
T 2xdw_A 286 ---FEGE-YDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVPEH-----EKDVLEWVACV--RSNFLVLC 352 (710)
T ss_dssp ---SSSC-EEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEECCC-----SSCEEEEEEEE--TTTEEEEE
T ss_pred ---CCcE-EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccCCC-----CCCeEEEEEEE--cCCEEEEE
Confidence 1111 222333478888887543 22467999999875 588775211 11112222222 24667666
Q ss_pred cCCCCCCCCeEEEEECCCCc
Q 007111 271 GGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 271 GG~~~~~~~dV~vyd~~~~~ 290 (617)
...++ ...|+++++.+.+
T Consensus 353 ~~~~g--~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 353 YLHDV--KNTLQLHDLATGA 370 (710)
T ss_dssp EEETT--EEEEEEEETTTCC
T ss_pred EEECC--EEEEEEEECCCCC
Confidence 55432 3478899985443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.9 Score=46.29 Aligned_cols=177 Identities=10% Similarity=-0.024 Sum_probs=92.1
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
.+.+||+.+......-. .......-.+++.. ++.+++.|+.+ ..+.+||+.+.....+....
T Consensus 97 ~i~iwd~~~~~~~~~~~----------~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~ 160 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQ----------GMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQVFAKTD 160 (383)
T ss_dssp CEEEEETTSTTCEEEEC----------CCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEEEEECCC
T ss_pred eEEEEeCCCcccceeee----------cCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceEEEeccC
Confidence 58899998777654432 00011112333333 34677777653 26888999887776665211
Q ss_pred CCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCc-EEEEEccCCC
Q 007111 93 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~-~LyV~GG~~~ 170 (617)
.....-.+++. -++.+++.|+.+ ..+.+||+.......+. + .. ..-.+++...+. .+++.|+.++
T Consensus 161 --~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~--~--h~-~~v~~~~~~~~~~~~l~s~~~d~ 227 (383)
T 3ei3_B 161 --SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEK--L--HK-AKVTHAEFNPRCDWLMATSSVDA 227 (383)
T ss_dssp --CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEE--C--SS-SCEEEEEECSSCTTEEEEEETTS
T ss_pred --CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEec--c--CC-CcEEEEEECCCCCCEEEEEeCCC
Confidence 11111122222 245667777654 35899998655444442 1 11 111223333333 2677777764
Q ss_pred CCCCCeEEEEECCC----CcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 171 SKTLNDLYSLDFET----MIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 171 ~~~~n~v~~yD~~t----~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
.+..||+.+ ......... ...-.+++.. ++.+++.|+.. ..+.+||+.+.
T Consensus 228 -----~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 228 -----TVKLWDLRNIKDKNSYIAEMPH-----EKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDW 283 (383)
T ss_dssp -----EEEEEEGGGCCSTTCEEEEEEC-----SSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBT
T ss_pred -----EEEEEeCCCCCcccceEEEecC-----CCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCC
Confidence 489999876 444332221 1112233332 45666777654 35888888754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=95.06 E-value=3 Score=42.22 Aligned_cols=199 Identities=11% Similarity=-0.021 Sum_probs=96.2
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.++.+|+.+.....+... +....... ...-+++.++++... ..++++|+.+..-..+. ..
T Consensus 61 ~l~~~d~~~g~~~~lt~~----------~~~~~~~~-~~spdg~~l~~~~~~------~~l~~~d~~~g~~~~~~---~~ 120 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEG----------RGDNTFGG-FLSPDDDALFYVKDG------RNLMRVDLATLEENVVY---QV 120 (388)
T ss_dssp EEEEEETTTCEEEECCCS----------SCBCSSSC-EECTTSSEEEEEETT------TEEEEEETTTCCEEEEE---EC
T ss_pred eEEEEeCCCCceEEeeeC----------CCCCccce-EEcCCCCEEEEEeCC------CeEEEEECCCCcceeee---ec
Confidence 588999988887776641 11111111 222244433343321 37999999988766554 23
Q ss_pred CCCcceeEEEE--ECCEEEE-EeecCC---------------CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 95 PVARSGHTVVR--ASSVLIL-FGGEDG---------------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 95 P~~R~~~s~~~--~~~~IYv-~GG~~~---------------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
|.......... .++.+++ +--... .......++++|+.+.+-..+... .....+....
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~s 196 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----NQWLGHPIYR 196 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE----SSCEEEEEEE
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC----CccccccEEC
Confidence 33322222222 2333332 110000 011236799999999887666311 1122223333
Q ss_pred E-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEECC
Q 007111 157 Y-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
- +++.|+.............++.+|+.+.....+... .........+.. +++ |+.+.... ......++++|+.
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 197 PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPE 272 (388)
T ss_dssp TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEEECTT
T ss_pred CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcccccceECCCCCEEEEEecCC-CCCcceEEEEecC
Confidence 2 344333322211122345799999987776655432 111111112222 444 54443322 1112359999999
Q ss_pred CCcEEEee
Q 007111 234 KGEWSVAI 241 (617)
Q Consensus 234 ~~~W~~l~ 241 (617)
+.....+.
T Consensus 273 ~g~~~~l~ 280 (388)
T 3pe7_A 273 TLENRQLT 280 (388)
T ss_dssp TCCEEEEE
T ss_pred CCceEEEE
Confidence 88766654
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.018 Score=69.06 Aligned_cols=114 Identities=23% Similarity=0.262 Sum_probs=55.5
Q ss_pred HhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHH
Q 007111 481 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVA 560 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~ 560 (617)
.+..||.+|.+....+++.|+.........++++++ ...|++.||+.++.+|.+++|.+++-|-| ..||.|++
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~---~~~e~~~L~~~l~~le~~~~e~~~~~~~v----~~L~~e~~ 994 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT---YSTETEKLRSDVERLRMSEEEAKNATNRV----LSLQEEIA 994 (1080)
T ss_dssp -----------------------------CHHHHHH---HHHHHHHHHHTHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 344555555555554444444433333222333322 34678889888999999888888776554 46888888
Q ss_pred HHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhh
Q 007111 561 FLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
-|+.-++.++||+......+.-... .||-.|.+|++-.+.|
T Consensus 995 ~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L 1035 (1080)
T 2dfs_A 995 KLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLL 1035 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8998888888888877544322221 4555555555444433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.97 E-value=1 Score=45.99 Aligned_cols=199 Identities=16% Similarity=0.093 Sum_probs=95.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC----C-cEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET----E-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t----~-~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
++.+++.|+.+ ..+.+||+.+ . .-..+. . .. ..-.+++.. ++.+++.|+.++ .+.+
T Consensus 78 ~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~---~-h~-~~v~~~~~~~~~~~~l~s~~~dg------~v~i 140 (416)
T 2pm9_A 78 NNKIIAGALDN------GSLELYSTNEANNAINSMARFS---N-HS-SSVKTVKFNAKQDNVLASGGNNG------EIFI 140 (416)
T ss_dssp SSSCEEEEESS------SCEEEECCSSTTSCCCEEEECC---C-SS-SCCCEEEECSSSTTBEEEECSSS------CEEB
T ss_pred CCCeEEEEccC------CeEEEeecccccccccchhhcc---C-Cc-cceEEEEEcCCCCCEEEEEcCCC------eEEE
Confidence 55666676652 2477788776 1 222221 1 11 111222222 256777776543 4788
Q ss_pred EECCCCc------EEEeecCCCCC-CCCcccEEEEECC-cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCC--
Q 007111 129 FDLKSLT------WLPLHCTGTGP-SPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS-- 198 (617)
Q Consensus 129 yD~~t~~------W~~l~~~g~~P-~~R~~h~a~~~~~-~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~-- 198 (617)
||+.+.. -... . .... ....-.+++...+ ..+++.|+.++ .+..||+.+..............
T Consensus 141 wd~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLT-P-GQSMSSVDEVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp CBTTTTSSCTTTCCCBC-C-CCSCCSSCCCCEEEECSSCTTEEEEESSSS-----CEEEEETTTTEEEEEECCCCCSSCC
T ss_pred EECCCCccccccccccc-c-ccccCCCCCeeEEEeCCCCCcEEEEEcCCC-----CEEEEECCCCCcceEEecccccccc
Confidence 8887764 1111 0 0111 1111123333332 33788887764 39999998876654433210000
Q ss_pred CCcceEEEEE-C-CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC-CCCcceEEEEEeecCCcEEEEEcCCCC
Q 007111 199 PRAGCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV-TSNKGFTLVLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 199 ~R~~ha~v~~-~-~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p-~~r~~~s~v~v~~~~~~~L~I~GG~~~ 275 (617)
...-.+++.. + ..+++.|+..+. ...+.+||+.+..-. +. ... ........+.+... ++.+++.|+.++
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~-~~----~~~~~~~~~v~~~~~s~~-~~~~l~s~~~dg 285 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTP-LQ----TLNQGHQKGILSLDWCHQ-DEHLLLSSGRDN 285 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSC-SB----CCCSCCSSCEEEEEECSS-CSSCEEEEESSS
T ss_pred CCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCC-cE----EeecCccCceeEEEeCCC-CCCeEEEEeCCC
Confidence 1222233333 2 357777765431 124778888764210 00 001 11122334444321 245667777653
Q ss_pred CCCCeEEEEECCCCc
Q 007111 276 EPSNQVEVLSIEKNE 290 (617)
Q Consensus 276 ~~~~dV~vyd~~~~~ 290 (617)
.|.+||+.+.+
T Consensus 286 ----~v~~wd~~~~~ 296 (416)
T 2pm9_A 286 ----TVLLWNPESAE 296 (416)
T ss_dssp ----EEEEECSSSCC
T ss_pred ----CEEEeeCCCCc
Confidence 68888887754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.93 E-value=5.7 Score=43.80 Aligned_cols=167 Identities=13% Similarity=-0.013 Sum_probs=90.5
Q ss_pred CCEEEEEcccCCCCC--CceEEEEEECC-CC---cEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGS--DRVSVWTFDTE-TE---CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~--~~~~v~~yd~~-t~---~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
+++.+++........ ....+|++|+. +. ....+... . .......+. -++++|+.+..++ ...+|+
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~ 269 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHR 269 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS----SCEEEE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC----CeEEEE
Confidence 555444444322111 23589999998 56 44444310 0 111222222 2567777765543 247999
Q ss_pred EECCCCcEEEeecCC-CC--CCCCc-ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 129 FDLKSLTWLPLHCTG-TG--PSPRS-NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 129 yD~~t~~W~~l~~~g-~~--P~~R~-~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
+|+.+.+|..+.... .. |.-.. ....+.. ++. +++.+.. + ...+|.+|+.++....+... . ....
T Consensus 270 ~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~---~~~l~~~d~~~~~~~~l~~~----~-~~~~ 339 (662)
T 3azo_A 270 VDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-G---AAVLGILDPESGELVDAAGP----W-TEWA 339 (662)
T ss_dssp ECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-S---SCEEEEEETTTTEEEECCSS----C-CEEE
T ss_pred EECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-C---ccEEEEEECCCCcEEEecCC----C-CeEE
Confidence 999899998874210 00 10000 1123333 445 6665544 2 35789999988887666431 1 1122
Q ss_pred EE-EEECCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 204 CG-VLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 204 a~-v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
.+ ...++.++++.+... ...++|.+|+.+.....+..
T Consensus 340 ~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 340 ATLTVSGTRAVGVAASPR--TAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp EEEEEETTEEEEEEEETT--EEEEEEEEETTTCCEEEEES
T ss_pred EEEecCCCEEEEEEcCCC--CCCEEEEEECCCCceEEeec
Confidence 33 344677766654321 23568999999988887753
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=94.93 E-value=1.8 Score=42.54 Aligned_cols=176 Identities=18% Similarity=0.070 Sum_probs=85.3
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
..+++||+.+.+....-..+ ...+.++.. ++ .||+.+ ..+++||+.+.+-...-..+..+.+.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~- 179 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAP-----RQITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWEAET- 179 (337)
T ss_dssp CEEEEEETTTTEEEEEEECC-----SSCCCEEECTTSSCEEEES---------SSEEEEETTTTEEEEEECSTTTTTTT-
T ss_pred ceEEEEECCCCcEEEEEeCC-----CCcceeEECCCCCEEEEeC---------CeEEEEECCCCcEeeeeeccccCCCc-
Confidence 57999999887654332111 112222222 33 466651 45999999988754332112211111
Q ss_pred ccEEEEECCcEEEEEccCCC-------------C-----CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-
Q 007111 151 NHVAALYDDKNLLIFGGSSK-------------S-----KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT- 210 (617)
Q Consensus 151 ~h~a~~~~~~~LyV~GG~~~-------------~-----~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~- 210 (617)
...-++..+|+.+..+. . .....++.||+.+++-..+... +......+++.. ++
T Consensus 180 ---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 180 ---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKT 253 (337)
T ss_dssp ---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSS
T ss_pred ---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC---CCCCceeeEEECCCCC
Confidence 11112232332221110 0 0112589999998876533321 112222233333 33
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+|+. ...+++||+.+.+.......+ ..-.+ +.+.. +...||+. +. .+.|.+||+.+.+
T Consensus 254 ~l~~~--------~~~v~~~d~~~~~~~~~~~~~------~~~~~-~~~s~-dg~~l~~~-~~----~~~i~v~d~~~~~ 312 (337)
T 1pby_B 254 RAFGA--------YNVLESFDLEKNASIKRVPLP------HSYYS-VNVST-DGSTVWLG-GA----LGDLAAYDAETLE 312 (337)
T ss_dssp EEEEE--------ESEEEEEETTTTEEEEEEECS------SCCCE-EEECT-TSCEEEEE-SB----SSEEEEEETTTCC
T ss_pred EEEEe--------CCeEEEEECCCCcCcceecCC------Cceee-EEECC-CCCEEEEE-cC----CCcEEEEECcCCc
Confidence 55554 156999999887643322111 11122 33332 33456654 33 2579999998765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.92 E-value=2 Score=47.48 Aligned_cols=193 Identities=13% Similarity=-0.012 Sum_probs=97.5
Q ss_pred ceEEEEEECCC------CcEEEee-ccCCCCCCcceeEEEEECCEEEEEeecCCCCC--ccCeEEEEECC-CC---cEEE
Q 007111 72 RVSVWTFDTET------ECWSVVE-AKGDIPVARSGHTVVRASSVLILFGGEDGKRR--KLNDLHMFDLK-SL---TWLP 138 (617)
Q Consensus 72 ~~~v~~yd~~t------~~W~~~~-~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~--~~~~v~~yD~~-t~---~W~~ 138 (617)
...++++|+.+ .....+. . + ..........-+++.+++...+.... ...+++++|+. +. ....
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~-~---~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDD-A---HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCS-C---SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEec-C---CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 35899999988 6655543 1 0 11111112222454444444332211 13579999998 56 4444
Q ss_pred eecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC-CCCCCc---ceEEEEE-CCEE
Q 007111 139 LHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF-HPSPRA---GCCGVLC-GTKW 212 (617)
Q Consensus 139 l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~-~P~~R~---~ha~v~~-~~~I 212 (617)
+.. + . .......+.. +++ +|+.+..++ ...+|++|+.++.|..+..... ...+.. ...++.. ++++
T Consensus 236 l~~-~--~-~~~~~~~~~spdg~-l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 236 LLG-G--P-EEAIAQAEWAPDGS-LIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp EEE-E--T-TBCEEEEEECTTSC-EEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred eCC-C--C-CceEcceEECCCCe-EEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE
Confidence 421 0 0 1111223333 566 777765543 2479999998999987754211 000110 1123333 6777
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.+.. ....+|.+|+.+.....+... ...+..+. ..+++..+|+.++.+ ....+|.+|+.+.+
T Consensus 308 ~~~~~~----~~~~l~~~d~~~~~~~~l~~~-------~~~~~~~~-s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 308 AVVHGK----GAAVLGILDPESGELVDAAGP-------WTEWAATL-TVSGTRAVGVAASPR--TAYEVVELDTVTGR 371 (662)
T ss_dssp EEEEBS----SSCEEEEEETTTTEEEECCSS-------CCEEEEEE-EEETTEEEEEEEETT--EEEEEEEEETTTCC
T ss_pred EEEEEc----CccEEEEEECCCCcEEEecCC-------CCeEEEEE-ecCCCEEEEEEcCCC--CCCEEEEEECCCCc
Confidence 777654 235789999988877665421 11122220 222333344443332 23467777776554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.91 E-value=1.2 Score=43.98 Aligned_cols=194 Identities=7% Similarity=-0.009 Sum_probs=91.7
Q ss_pred CCE-EEEEcccCCCCCCceEEEEEEC-CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKK-VLLVGGKTDSGSDRVSVWTFDT-ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~-lyV~GG~~~~~~~~~~v~~yd~-~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++. +++.|+.+ ..+.+||+ .+.....+. ..+....-.+++...+.+++.|+.++ .+.+||+.+
T Consensus 67 ~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~l~s~~~d~------~i~iwd~~~ 131 (342)
T 1yfq_A 67 NTDLQIYVGTVQ------GEILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWDG------LIEVIDPRN 131 (342)
T ss_dssp SSSEEEEEEETT------SCEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETTS------EEEEECHHH
T ss_pred CCCcEEEEEcCC------CeEEEEEeccCCceEecc---ccCCCCceEEEEeCCCCEEEEEcCCC------eEEEEcccc
Confidence 566 67777753 25888999 888765554 10011111223333255666666543 477887764
Q ss_pred Cc-------EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC-Cc--EEEeecCCCCCCCCcce
Q 007111 134 LT-------WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MI--WTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 134 ~~-------W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t-~~--W~~~~~~g~~P~~R~~h 203 (617)
.. ...+ ..+.... ...++.+.... ++.|+.+ ..+..||+.+ .. ...... +....-.
T Consensus 132 ~~~~~~~~~~~~~---~~~~~~~-~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~----~~~~~i~ 197 (342)
T 1yfq_A 132 YGDGVIAVKNLNS---NNTKVKN-KIFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES----GLKYQIR 197 (342)
T ss_dssp HTTBCEEEEESCS---SSSSSCC-CEEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC----SCSSCEE
T ss_pred cccccccccCCee---eEEeeCC-ceEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec----CCCCcee
Confidence 10 2212 1222111 12233344442 5556554 3599999987 43 222222 1112222
Q ss_pred EEEEE--CCEEEEEecCCCCCccceEEEEECCCC--------cEEEeecCCCCC--CCCCcceEEEEEeecCCcEEEEEc
Q 007111 204 CGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG--------EWSVAITSPSSS--VTSNKGFTLVLVQHKEKDFLVAFG 271 (617)
Q Consensus 204 a~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~--------~W~~l~~~~~~~--p~~r~~~s~v~v~~~~~~~L~I~G 271 (617)
+++.. ++.++++|+..+ .+.+|++... .... ....... .........+.+.. ++.+++.|
T Consensus 198 ~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 269 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTA 269 (342)
T ss_dssp EEEECSGGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEEECT--TTCCEEEE
T ss_pred EEEECCCCCCEEEEEecCC-----cEEEEEEcCCCcccccccceee-ecccccccccccceeEEEEEEcC--CCCEEEEe
Confidence 33333 466777777543 3555554432 2222 1111000 00011233334432 24466777
Q ss_pred CCCCCCCCeEEEEECCCCc
Q 007111 272 GIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 272 G~~~~~~~dV~vyd~~~~~ 290 (617)
+.++ .|.+||+.+.+
T Consensus 270 ~~dg----~i~vwd~~~~~ 284 (342)
T 1yfq_A 270 GSDG----IISCWNLQTRK 284 (342)
T ss_dssp ETTS----CEEEEETTTTE
T ss_pred cCCc----eEEEEcCccHh
Confidence 7654 58899988765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=94.83 E-value=1.9 Score=42.36 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=74.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCc-ccceEEEEEC-CEEEEEcccCCCCCCceEEEEEECCCCcEEE-eec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA-CRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~-r~~hs~v~~g-~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~ 90 (617)
..+.+||+.+.+....-.. +... +.......-+ ..+|+.++. ...+++||+.+.+... ++.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITI----------ADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp TEEEEEETTTTEEEEEEEC----------TTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEEc----------CCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEc
Confidence 4799999988765432210 1100 1111222223 477777643 1369999998877543 321
Q ss_pred cCCCCC--CcceeEEEEE--CCEEEEEeecC---CCCC--ccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCc
Q 007111 91 KGDIPV--ARSGHTVVRA--SSVLILFGGED---GKRR--KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDK 160 (617)
Q Consensus 91 ~g~~P~--~R~~~s~~~~--~~~IYv~GG~~---~~~~--~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~ 160 (617)
+. +. ....+.++.. +..+|+..+.. .... ....+++||+.+.+....-..+.. -+.++.. +++
T Consensus 75 -~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~ 147 (337)
T 1pby_B 75 -ST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWARDGS 147 (337)
T ss_dssp -CB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECTTSS
T ss_pred -CC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECCCCC
Confidence 11 00 0011223332 34677764221 1100 136799999998875543211111 1233333 455
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCcEEEee
Q 007111 161 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 191 (617)
Q Consensus 161 ~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~ 191 (617)
++|+.+ +.+++||+.+++.....
T Consensus 148 ~l~~~~--------~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 148 KLYGLG--------RDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp CEEEES--------SSEEEEETTTTEEEEEE
T ss_pred EEEEeC--------CeEEEEECCCCcEeeee
Confidence 466652 35999999888765443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=94.82 E-value=2.9 Score=39.92 Aligned_cols=192 Identities=11% Similarity=-0.039 Sum_probs=101.2
Q ss_pred EEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEE
Q 007111 51 SLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 51 s~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
+++.. ++++|+... . ..+++||+.+........ ........++.. ++.+|+.... ...+++
T Consensus 71 ~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~ 133 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG------NNRVVK 133 (270)
T ss_dssp CEEECTTCCEEEEET-T------TEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG------GTEEEE
T ss_pred eeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC------CCEEEE
Confidence 34443 467888754 1 269999998876544431 111233444444 5678886432 246888
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
||..+........ ..+.. -..+++. +++ +|+..... +.|++||+.+......... .. ..-..++.
T Consensus 134 ~~~~~~~~~~~~~-~~~~~---p~~i~~~~~g~-l~v~~~~~-----~~i~~~~~~~~~~~~~~~~---~~-~~p~~i~~ 199 (270)
T 1rwi_B 134 LAAGSKTQTVLPF-TGLND---PDGVAVDNSGN-VYVTDTDN-----NRVVKLEAESNNQVVLPFT---DI-TAPWGIAV 199 (270)
T ss_dssp ECTTCCSCEECCC-CSCCS---CCCEEECTTCC-EEEEEGGG-----TEEEEECTTTCCEEECCCS---SC-CSEEEEEE
T ss_pred EECCCceeEeecc-ccCCC---ceeEEEeCCCC-EEEEECCC-----CEEEEEecCCCceEeeccc---CC-CCceEEEE
Confidence 8876665443311 11111 1234443 355 88775432 3599999987664433221 11 11223333
Q ss_pred E-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 208 C-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 208 ~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
. ++.+|+..... ..+++||+....-..... ........+.+.. ++.||+....+ +.|.+|++
T Consensus 200 d~~g~l~v~~~~~-----~~v~~~~~~~~~~~~~~~------~~~~~p~~i~~~~--~g~l~v~~~~~----~~v~~~~~ 262 (270)
T 1rwi_B 200 DEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLPF------TGLNTPLAVAVDS--DRTVYVADRGN----DRVVKLTS 262 (270)
T ss_dssp CTTCCEEEEETTT-----SCEEEECTTCSCCEECCC------CSCSCEEEEEECT--TCCEEEEEGGG----TEEEEECC
T ss_pred CCCCCEEEEECCC-----CcEEEEcCCCCcceeecc------CCCCCceeEEECC--CCCEEEEECCC----CEEEEEcC
Confidence 3 45888876433 348899987654333211 1112233444442 24577765432 47888887
Q ss_pred CCCc
Q 007111 287 EKNE 290 (617)
Q Consensus 287 ~~~~ 290 (617)
...+
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 6544
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.98 Score=46.17 Aligned_cols=197 Identities=11% Similarity=0.103 Sum_probs=96.5
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCc------EEEeeccCCCC-CCcceeEEEEE-C-CEEEEEeecCCCCCccCeEE
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIP-VARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~g~~P-~~R~~~s~~~~-~-~~IYv~GG~~~~~~~~~~v~ 127 (617)
+.+++.|+.+ ..+.+||+.+.. -..... ... ....-.+++.. + +.+++.|+.++ .+.
T Consensus 126 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~ 191 (416)
T 2pm9_A 126 DNVLASGGNN------GEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVISLAWNQSLAHVFASAGSSN------FAS 191 (416)
T ss_dssp TTBEEEECSS------SCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCEEEECSSCTTEEEEESSSS------CEE
T ss_pred CCEEEEEcCC------CeEEEEECCCCccccccccccccc--cccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEE
Confidence 5677777753 248888887764 111100 011 11111223332 2 56777776543 489
Q ss_pred EEECCCCcEEEeecCCCCCCC----CcccE-EEEEC-CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 128 MFDLKSLTWLPLHCTGTGPSP----RSNHV-AALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 201 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~----R~~h~-a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~ 201 (617)
+||+.+.+....- ..+.. ..... ++... +..+++.|+.++. ...+..||+.+..-. +.... ......
T Consensus 192 iwd~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~-~~~~~-~~~~~~ 264 (416)
T 2pm9_A 192 IWDLKAKKEVIHL---SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTP-LQTLN-QGHQKG 264 (416)
T ss_dssp EEETTTTEEEEEE---CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSC-SBCCC-SCCSSC
T ss_pred EEECCCCCcceEE---eccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCC-cEEee-cCccCc
Confidence 9999887654332 11110 11122 23332 3236777766541 124888998764311 11110 001111
Q ss_pred ceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 202 GCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 202 ~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
-.+++.. ++.+++.|+.. ..+.+||+.+..-....... ......+.+... ...+++.|+.++
T Consensus 265 v~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~-~~~~l~s~~~d~---- 328 (416)
T 2pm9_A 265 ILSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAEQLSQFPAR------GNWCFKTKFAPE-APDLFACASFDN---- 328 (416)
T ss_dssp EEEEEECSSCSSCEEEEESS-----SEEEEECSSSCCEEEEEECS------SSCCCCEEECTT-CTTEEEECCSSS----
T ss_pred eeEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCccceeecCC------CCceEEEEECCC-CCCEEEEEecCC----
Confidence 2233332 56777777754 34889998776543321100 111222333322 225777888753
Q ss_pred eEEEEECCCCc
Q 007111 280 QVEVLSIEKNE 290 (617)
Q Consensus 280 dV~vyd~~~~~ 290 (617)
.|.+||+....
T Consensus 329 ~i~iw~~~~~~ 339 (416)
T 2pm9_A 329 KIEVQTLQNLT 339 (416)
T ss_dssp EEEEEESCCCC
T ss_pred cEEEEEccCCC
Confidence 68899987755
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.80 E-value=3.3 Score=40.71 Aligned_cols=188 Identities=9% Similarity=0.073 Sum_probs=94.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+++.|+.+ ..+..++........... ..............+.+++.|+.++. +.+||.....
T Consensus 97 dg~~l~s~~~d------~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~~------~~~~d~~~~~ 161 (340)
T 4aow_A 97 DGQFALSGSWD------GTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDKT------IKLWNTLGVC 161 (340)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSC------EEEECTTSCE
T ss_pred CCCEEEEEccc------ccceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCCe------EEEEEeCCCc
Confidence 55667777653 257778887776554441 12222222222234566667765443 6677776554
Q ss_pred EEEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
-..... .........+.+ ....+++.||.++ .+..||+.+......... ....-.+++.. ++.
T Consensus 162 ~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~----h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 162 KYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG----HTGYLNTVTVSPDGS 228 (340)
T ss_dssp EEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCEEEEEECTTSS
T ss_pred eEEEEe----ccccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecC----CCCcEEEEEECCCCC
Confidence 333311 111111122222 2233666777654 388999988765543321 11112233333 567
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+++.|+.. ..+.+||+.+..-..... .......+.+.. .+ .++.|+.+ ..|.+||+.+..
T Consensus 229 ~l~s~s~D-----g~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~--~~-~~~~~~~d----~~i~iwd~~~~~ 288 (340)
T 4aow_A 229 LCASGGKD-----GQAMLWDLNEGKHLYTLD-------GGDIINALCFSP--NR-YWLCAATG----PSIKIWDLEGKI 288 (340)
T ss_dssp EEEEEETT-----CEEEEEETTTTEEEEEEE-------CSSCEEEEEECS--SS-SEEEEEET----TEEEEEETTTTE
T ss_pred EEEEEeCC-----CeEEEEEeccCceeeeec-------CCceEEeeecCC--CC-ceeeccCC----CEEEEEECCCCe
Confidence 77777755 357889988765433221 111233333332 22 34455543 367888877653
|
| >2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.15 Score=46.72 Aligned_cols=122 Identities=22% Similarity=0.338 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH----------
Q 007111 472 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ---------- 538 (617)
Q Consensus 472 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q---------- 538 (617)
.+|+-..|-+-..|+..|.++...++.+.-.... +=.-..+++.+++....|+..|+++++......
T Consensus 5 StKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~i 84 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 84 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888877777654333222 112233344555566666666665554333222
Q ss_pred ------------HhhhcccccccCCCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 539 ------------EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 539 ------------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
|||| +||... |.|+.. ++-=.+.+++.|+-++++|.. ||..|-+||.-++.||+
T Consensus 85 e~ElEeLTasLFeEAN---~MVa~a--r~~~~~--~e~r~~~L~~ql~e~~~~l~~-------lq~ql~~LK~v~~~m~~ 150 (154)
T 2ocy_A 85 NKEVEDLTASLFDEAN---NMVADA--RKEKYA--IEILNKRLTEQLREKDTLLDT-------LTLQLKNLKKVMHSLDN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTSCCC-
T ss_pred HHHHHHHHHHHHHHHH---HHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Confidence 3344 344422 333221 222234455666666666664 78899999999999986
Q ss_pred c
Q 007111 607 R 607 (617)
Q Consensus 607 ~ 607 (617)
-
T Consensus 151 e 151 (154)
T 2ocy_A 151 E 151 (154)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=94.75 E-value=2.3 Score=42.04 Aligned_cols=191 Identities=10% Similarity=0.084 Sum_probs=95.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+++.|+.+ ..+.+||..+..-...- ..............++.+++.|+.++ .+.+||..+..
T Consensus 24 ~~~~l~s~~~d------g~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYS------GRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDF------RIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTS------EEEEEETTTCC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCC------EEEEEECCCCc
Confidence 45666677653 25888898877533221 11111111222223556677776543 48889988775
Q ss_pred EEE-eecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEE
Q 007111 136 WLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 212 (617)
Q Consensus 136 W~~-l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~I 212 (617)
-.. +. + ....-.+++...+..+++.|+.++. |..||+.++.-...... .....-.+++.. ++.+
T Consensus 89 ~~~~~~--~---h~~~v~~~~~~~~~~~l~sgs~D~~-----v~lWd~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 89 KVVDFE--A---HPDYIRSIAVHPTKPYVLSGSDDLT-----VKLWNWENNWALEQTFE---GHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEEEE--C---CSSCEEEEEECSSSSEEEEEETTSC-----EEEEEGGGTTEEEEEEC---CCCSCEEEEEECTTCTTE
T ss_pred EEEEEe--C---CCCcEEEEEEcCCCCEEEEECCCCe-----EEEEECCCCcchhhhhc---ccCCcEEEEEECCCCCCE
Confidence 332 21 1 1111123333333337778887754 88899876522111111 111112233332 3467
Q ss_pred EEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.|+..+ .+.+||+.... ..... . .......+.+....++.+++.|+.++ .|.+||+.+.+
T Consensus 156 l~sgs~D~-----~v~iwd~~~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~~ 219 (304)
T 2ynn_A 156 FASGCLDR-----TVKVWSLGQSTPNFTLTT--G-----QERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTKS 219 (304)
T ss_dssp EEEEETTS-----EEEEEETTCSSCSEEEEC--C-----CTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTTE
T ss_pred EEEEeCCC-----eEEEEECCCCCccceecc--C-----CcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCCc
Confidence 77777653 47888876532 11111 0 11122333333222345667777653 68889987654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=94.74 E-value=3.4 Score=46.32 Aligned_cols=149 Identities=9% Similarity=-0.027 Sum_probs=72.9
Q ss_pred eEEEEECCC-CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 007111 125 DLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 203 (617)
Q Consensus 125 ~v~~yD~~t-~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~h 203 (617)
.++++|+.+ .+-..+.. +. +...+-...+.-+++.|++.. .+.......++++|+.++....+........-....
T Consensus 264 ~l~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~pDg~~l~~~~-~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDL-GK-EQDIYLARVNWRDPQHLSFQR-QSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECC-CS-CSSEEEEEEEEEETTEEEEEE-EETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecC-CC-CcceEEEEEEeCCCCEEEEEE-ecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788999988 77555521 10 111111222224556444433 222223467999999998887765421100000001
Q ss_pred EEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEE-EEeecCCcEEEEEcCCCCCCCCeE
Q 007111 204 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV-LVQHKEKDFLVAFGGIKKEPSNQV 281 (617)
Q Consensus 204 a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v-~v~~~~~~~L~I~GG~~~~~~~dV 281 (617)
..+.. ++++++.++..+ ...+|.+|.... +..+.. .......+ .+. .+...|++.+..++.....+
T Consensus 341 ~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~-------~~~~v~~~~~~s-~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH-------GNWSVDELLAVD-EKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp CCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC-------SSSCEEEEEEEE-TTTTEEEEEECSSCTTCBEE
T ss_pred ceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee-------cceEEEeEeEEe-CCCCEEEEEEeCCCCceEEE
Confidence 12222 566666655432 357899987666 555431 11122222 243 33455666665443334456
Q ss_pred EEEECCC
Q 007111 282 EVLSIEK 288 (617)
Q Consensus 282 ~vyd~~~ 288 (617)
|..+...
T Consensus 409 ~~~~~~g 415 (741)
T 2ecf_A 409 YAVPLQG 415 (741)
T ss_dssp EEEETTC
T ss_pred EEEEcCC
Confidence 6666543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=2.8 Score=47.44 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=62.5
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
+.++++|..+.+ |+.-........ +.........+.+..+++||+.... ..++.+|..+.+ |+.-.
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~v~v~~~d-------g~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTG---FKGCCDVVNRGVALWKGKVYVGAWD-------GRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGG---GGSSSCSCCCCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEET
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccc---ccccccCCCCCceEECCEEEEEcCC-------CEEEEEECCCCCEEeeecC
Confidence 469999998765 876543110000 0000000112345578888886432 369999998775 87653
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
............+-++.++.+|+..+.... .....++.||..+.+ |+.-
T Consensus 157 ~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred CcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEec
Confidence 100000011222334567888775443221 135679999999876 8864
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=4 Score=45.60 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=66.8
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEEC-CCCc--EEEeeccCC--CCCCcc---eeEEEE--ECCE----EEEEeecC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVARS---GHTVVR--ASSV----LILFGGED 117 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~g~--~P~~R~---~~s~~~--~~~~----IYv~GG~~ 117 (617)
-++.++.||+.+.. ...++.+|. .+.+ |+.-..... .+..++ ....++ .++. ||+...
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 34569999998752 125999999 7765 987542110 000111 122344 4666 777521
Q ss_pred CCCCccCeEEEEECCCCc--EEEeecCCCCCCC-CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEee
Q 007111 118 GKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 118 ~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
-..++.+|..+.+ |+.-. +..... ....+-++.++. +|+-.+......-..++.||..+++ |+.-.
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~--~~~~~~~~~~ssP~v~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 -----DGNVAALNAETGETVWKVEN--SDIKVGSTLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp -----TSEEEEEETTTCCEEEEEEC--CCGGGTCBCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred -----CCEEEEEECCCCCEEEeecC--CCCCccceeecCCEEECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 2469999998876 98542 110000 111122345665 5553321111123579999998765 87654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=4.6 Score=41.58 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=66.3
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+.+.+-...-. .....-.+++.. ++..++.|+.+ ..+.+||+.+......-.
T Consensus 146 ~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~--- 204 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQ------------GHEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQCSLTLS--- 204 (393)
T ss_dssp CEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---
T ss_pred eEEEEECCCCcEEEEEc------------cCCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCeeEEEEE---
Confidence 57888887765432211 011111233332 45556666653 368888998876543321
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCC-CCCCC-cc-cEEEEE-CCcEEEEEcc
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT-GPSPR-SN-HVAALY-DDKNLLIFGG 167 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~-~P~~R-~~-h~a~~~-~~~~LyV~GG 167 (617)
... .-.+++.. ++.+++.|+.++ .+.+||..+..-...-.... ..... .. .+++.. ++. +++.|+
T Consensus 205 ~~~--~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s 275 (393)
T 1erj_A 205 IED--GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS 275 (393)
T ss_dssp CSS--CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE
T ss_pred cCC--CcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe
Confidence 111 11122222 567788887654 38889988776433210000 00111 11 122222 345 677787
Q ss_pred CCCCCCCCeEEEEECCCC
Q 007111 168 SSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 168 ~~~~~~~n~v~~yD~~t~ 185 (617)
.++ .+..||+.+.
T Consensus 276 ~d~-----~v~~wd~~~~ 288 (393)
T 1erj_A 276 LDR-----SVKLWNLQNA 288 (393)
T ss_dssp TTS-----EEEEEEC---
T ss_pred CCC-----EEEEEECCCC
Confidence 764 4888887653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.71 Score=50.85 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=97.5
Q ss_pred eEEEEEECCCCcEE-EeeccCC-------CCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCC
Q 007111 73 VSVWTFDTETECWS-VVEAKGD-------IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG 143 (617)
Q Consensus 73 ~~v~~yd~~t~~W~-~~~~~g~-------~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 143 (617)
..+.++|..+.+-. .++..+. .|.+|........ +..+|+.+ . ..+.++++|..+.+-..+.
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~-----~~g~i~vvd~~~~~~l~~~--- 318 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-K-----ETGKVLLVNYKDIDNLTVT--- 318 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-T-----TTTEEEEEECTTSSSCEEE---
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-C-----CCCeEEEEEecCCCcceeE---
Confidence 36888898877533 3332110 0222333222222 34555543 2 2357999998775421111
Q ss_pred CCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCC
Q 007111 144 TGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSR 220 (617)
Q Consensus 144 ~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~ 220 (617)
.++..+.-+..+.. +++++|+.+..+ +.|.++|+.+++.......+..|.+..+... .. ++.+|+.+....
T Consensus 319 ~i~~~~~~~~~~~spdg~~l~va~~~~-----~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 319 SIGAAPFLHDGGWDSSHRYFMTAANNS-----NKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD 392 (543)
T ss_dssp EEECCSSCCCEEECTTSCEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred EeccCcCccCceECCCCCEEEEEecCC-----CeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC
Confidence 11122223333443 456566654333 4689999999887665444444544333332 23 367777764322
Q ss_pred CCccceEEEEECCCC-----cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC--CCCeEEEEECCCCc
Q 007111 221 KKRHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKNE 290 (617)
Q Consensus 221 ~~~~~~v~~yDl~~~-----~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~--~~~dV~vyd~~~~~ 290 (617)
..+-++|..+. .|+.+...+... +.+..+-.+.+...||+-.-.+.+ ..+.|.+||+.+.+
T Consensus 393 ----~~V~v~d~~~~~~~~~~~~~v~~l~~~g-----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 393 ----GSISLIGTDPKNHPQYAWKKVAELQGQG-----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ----SEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ----ceEEEEEeCCCCCchhcCeEEEEEEcCC-----CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 35778888762 266655333211 111112233445666653311111 24589999998776
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.42 Score=50.32 Aligned_cols=193 Identities=9% Similarity=0.034 Sum_probs=94.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce-eEEEE--ECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~--~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++.+++.|+.++ .|.+||+.+....... ........ .+++. .++.+++.||.++ .+.+||+.
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~ 195 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFK 195 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeecc
Confidence 456777887632 4788888766533322 11111111 22333 2456677777654 37889998
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G 209 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~ 209 (617)
+.....+..... ......++... ++. +++.|+.++ .|..||+.+..-..+.. ....-.+++.. +
T Consensus 196 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~g~~dg-----~i~~wd~~~~~~~~~~~-----h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 196 GNILRVFASSDT--INIWFCSLDVSASSR-MVVTGDNVG-----NVILLNMDGKELWNLRM-----HKKKVTHVALNPCC 262 (435)
T ss_dssp SCEEEEEECCSS--CSCCCCCEEEETTTT-EEEEECSSS-----BEEEEESSSCBCCCSBC-----CSSCEEEEEECTTC
T ss_pred CCceeEEeccCC--CCccEEEEEECCCCC-EEEEEeCCC-----cEeeeccCcceeEEEec-----ccceEEeeeecCCC
Confidence 877665532111 11112233333 455 778888764 48899986543221111 01111222322 3
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
..+++.|+..+ .+.+||+.+..-.... . ..........++.+.. ++..++.|+.++ .|.+||+.+.
T Consensus 263 ~~~~~s~s~d~-----~v~iwd~~~~~~~~~~--~-~~~~h~~~v~~~~~sp--dg~~l~s~~~D~----~i~iwd~~~~ 328 (435)
T 4e54_B 263 DWFLATASVDQ-----TVKIWDLRQVRGKASF--L-YSLPHRHPVNAACFSP--DGARLLTTDQKS----EIRVYSASQW 328 (435)
T ss_dssp SSEEEEEETTS-----BCCEEETTTCCSSSCC--S-BCCBCSSCEEECCBCT--TSSEEEEEESSS----CEEEEESSSS
T ss_pred ceEEEEecCcc-----eeeEEecccccccceE--E-EeeeccccccceeECC--CCCeeEEEcCCC----EEEEEECCCC
Confidence 44666666543 3567887654311100 0 0000111222333322 344667777654 5788888764
Q ss_pred c
Q 007111 290 E 290 (617)
Q Consensus 290 ~ 290 (617)
.
T Consensus 329 ~ 329 (435)
T 4e54_B 329 D 329 (435)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=94.62 E-value=4 Score=40.64 Aligned_cols=189 Identities=10% Similarity=0.091 Sum_probs=87.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-------CCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-------SSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-------~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
++.+++.|+.+. .+.+||+....-..+.. ... .-..+... ++.+++.||.++ .+.+
T Consensus 118 ~~~~l~s~s~D~------~i~vwd~~~~~~~~~~~----h~~-~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~ 180 (319)
T 3frx_A 118 KASMIISGSRDK------TIKVWTIKGQCLATLLG----HND-WVSQVRVVPNEKADDDSVTIISAGNDK------MVKA 180 (319)
T ss_dssp TSCEEEEEETTS------CEEEEETTSCEEEEECC----CSS-CEEEEEECCC------CCEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCCC------eEEEEECCCCeEEEEec----cCC-cEEEEEEccCCCCCCCccEEEEEeCCC------EEEE
Confidence 456777777632 47777876654433321 111 11111111 233566666544 4788
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 207 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~ 207 (617)
||+.+.+-...- .+. ...-.+++.. ++. +++.||.++ .|.+||+.+.+-...... +. .-.+++.
T Consensus 181 wd~~~~~~~~~~-~~h---~~~v~~~~~sp~g~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~~--~v~~~~~ 245 (319)
T 3frx_A 181 WNLNQFQIEADF-IGH---NSNINTLTASPDGT-LIASAGKDG-----EIMLWNLAAKKAMYTLSA---QD--EVFSLAF 245 (319)
T ss_dssp EETTTTEEEEEE-CCC---CSCEEEEEECTTSS-EEEEEETTC-----EEEEEETTTTEEEEEEEC---CS--CEEEEEE
T ss_pred EECCcchhheee-cCC---CCcEEEEEEcCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEecC---CC--cEEEEEE
Confidence 998876543321 111 0111123333 445 777888764 489999987754332221 11 1223333
Q ss_pred E-CCEEEEEecCCCCCccceEEEEECCCCc-EEEeecC-CCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 208 C-GTKWYIAGGGSRKKRHAETLIFDILKGE-WSVAITS-PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 208 ~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~-W~~l~~~-~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
. ++.+++.+.. ..+.+|++.... +..+... ............++.+.. ++..++.|+.++ .|.+|
T Consensus 246 sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~sg~~Dg----~i~vW 313 (319)
T 3frx_A 246 SPNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA--DGQTLFAGYTDN----VIRVW 313 (319)
T ss_dssp CSSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT--TSSEEEEEETTS----CEEEE
T ss_pred cCCCCEEEEEcC------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC--CCCEEEEeecCc----eEEEE
Confidence 3 4444444432 235566665432 2222110 000011111222334432 345677888764 47777
Q ss_pred ECCC
Q 007111 285 SIEK 288 (617)
Q Consensus 285 d~~~ 288 (617)
|+.+
T Consensus 314 d~~t 317 (319)
T 3frx_A 314 QVMT 317 (319)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.58 E-value=4.2 Score=40.70 Aligned_cols=153 Identities=10% Similarity=0.088 Sum_probs=75.5
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCC--CcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKS--LTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++.+++.|+.+. .+.+||+.. ..+..+.. +......-.++.+ ++. +++.|+.++. +..||.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~-~l~s~s~D~~-----i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEA-LLASSSYDDT-----VRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSS-EEEEEETTSC-----EEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCC-EEEEEcCCCe-----EEEEEC
Confidence 467777777654 378888843 23443321 1111111122222 345 7788887754 888888
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEEC---CEEEEEecCCCCCccceEEEEECCC------CcEEEeecCCCCCCCCCcc
Q 007111 183 ETMIWTRIKIRGFHPSPRAGCCGVLCG---TKWYIAGGGSRKKRHAETLIFDILK------GEWSVAITSPSSSVTSNKG 253 (617)
Q Consensus 183 ~t~~W~~~~~~g~~P~~R~~ha~v~~~---~~IyI~GG~s~~~~~~~v~~yDl~~------~~W~~l~~~~~~~p~~r~~ 253 (617)
.+..|..+........ .-.++.... +..++.|+..+. +.+||+.. ..|......+.. ....
T Consensus 183 ~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~D~~-----v~iw~~~~~~~~~~~~~~~~~~~~~~---h~~~ 252 (330)
T 2hes_X 183 YDDDWECVAVLNGHEG--TVWSSDFDKTEGVFRLCSGSDDST-----VRVWKYMGDDEDDQQEWVCEAILPDV---HKRQ 252 (330)
T ss_dssp ETTEEEEEEEECCCSS--CEEEEEECCSSSSCEEEEEETTSC-----EEEEEEEEECTTSCEEEEEEEECCSC---CSSC
T ss_pred CCCCeeEEEEccCCCC--cEEEEEecCCCCeeEEEEEeCCCe-----EEEEEecCCCccccceeEEeeecccc---cccc
Confidence 7777776654321111 112222222 345556664432 55555432 245544322211 1112
Q ss_pred eEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 254 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 254 ~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
...+.+. ..+ +++.||.++ .|.+||..+..|
T Consensus 253 v~~v~~s--~~~-~l~s~~~dg----~v~iw~~~~~~~ 283 (330)
T 2hes_X 253 VYNVAWG--FNG-LIASVGADG----VLAVYEEVDGEW 283 (330)
T ss_dssp EEEEEEC--TTS-CEEEEETTS----CEEEEEEETTEE
T ss_pred eEEEEEc--CCC-EEEEEeCCC----EEEEEEcCCCce
Confidence 3333343 223 566777654 578888776655
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.035 Score=67.40 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=26.8
Q ss_pred chhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 483 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 483 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
..++.++..+...++++++.+....+..++++.++....++.+.|++++..++..
T Consensus 881 ~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~e 935 (1184)
T 1i84_S 881 KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544445555555444444444444445555555555555555544443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.54 E-value=2.9 Score=41.45 Aligned_cols=195 Identities=9% Similarity=0.026 Sum_probs=95.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEE----eecCC-------CCCcc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILF----GGEDG-------KRRKL 123 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~----GG~~~-------~~~~~ 123 (617)
++++|+.... ...+++||+. .+...+..............++. -++.||+. |-... .....
T Consensus 96 dG~l~v~~~~------~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 96 QQRLVHCEHG------RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp TSCEEEEETT------TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred CCCEEEEECC------CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 5678776321 1268899986 66665542111111111122333 35788885 32110 01123
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 124 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 124 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
..+++||+.+.+++.+. .+.. -...+.. +++.||+..........+.|++||+..+...........+....
T Consensus 169 ~~v~~~d~~~g~~~~~~---~~~~---p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p- 241 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA---DLDH---PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP- 241 (305)
T ss_dssp EEEEEECSSSCCCEEEE---EESS---EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC-
T ss_pred CeEEEEcCCCCcEEEEe---cCCC---CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC-
Confidence 57999999888877663 1111 1233343 34457776543211112579999987654332211100111111
Q ss_pred eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeE
Q 007111 203 CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 281 (617)
Q Consensus 203 ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV 281 (617)
..++.. ++.+|+..+ +.+++||+.......+.. + . ....+++. .+.+.|||.... .+
T Consensus 242 dgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~~-~----~---~~~~~~f~-~d~~~L~it~~~------~l 299 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIPT-P----G---TASNCTFD-QAQQRLFITGGP------CL 299 (305)
T ss_dssp CSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEEC-S----S---CCCEEEEC-TTSCEEEEEETT------EE
T ss_pred CeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEEC-C----C---ceeEEEEe-CCCCEEEEEcCC------eE
Confidence 122332 567777652 248999997766655542 1 1 23334444 344567765432 45
Q ss_pred EEEEC
Q 007111 282 EVLSI 286 (617)
Q Consensus 282 ~vyd~ 286 (617)
+++++
T Consensus 300 ~~~~~ 304 (305)
T 3dr2_A 300 WMLPL 304 (305)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.14 Score=52.06 Aligned_cols=149 Identities=12% Similarity=0.096 Sum_probs=71.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..|..+. .+........++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 22 ~g~~l~~~~~d------~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTAT------NQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSNRIVTCSQDR------NAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSS------SCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTCCEEEEETTS------SEEEC----
T ss_pred CCCEEEEecCC------CEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCCEEEEEeCCC------eEEEEEcCC
Confidence 55666777653 24677787788787765 23322222223333 457777777644 488888887
Q ss_pred Cc-EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCc-EEEeecCCCCCCCCcceEEEEE-
Q 007111 134 LT-WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC- 208 (617)
Q Consensus 134 ~~-W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~-W~~~~~~g~~P~~R~~ha~v~~- 208 (617)
.. |..... +........++.+ ++. +++.|+.++ .+..||+.+.. |........ +....-.+++..
T Consensus 87 ~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 87 DGTWKQTLV---LLRLNRAATFVRWSPNED-KFAVGSGAR-----VISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHP 156 (377)
T ss_dssp --CCCCEEE---CCCCSSCEEEEECCTTSS-CCEEEESSS-----CEEECCC-----CCCCEEECS-SCCSCEEEEEECT
T ss_pred CCceeeeeE---ecccCCceEEEEECCCCC-EEEEEecCC-----eEEEEEECCcccceeeeEeec-ccCCCeEEEEEcC
Confidence 76 543321 1111111222222 345 677777654 38888887664 322222110 112222233333
Q ss_pred CCEEEEEecCCCCCccceEEEEECCC
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
++.+++.|+..+ .+.+||+..
T Consensus 157 ~~~~l~~~~~d~-----~i~iwd~~~ 177 (377)
T 3dwl_C 157 NNVLLAAGCADR-----KAYVLSAYV 177 (377)
T ss_dssp TSSEEEEEESSS-----CEEEEEECC
T ss_pred CCCEEEEEeCCC-----EEEEEEEEe
Confidence 566777777653 377888753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=94.53 E-value=1.9 Score=46.63 Aligned_cols=153 Identities=8% Similarity=0.052 Sum_probs=76.4
Q ss_pred EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-C-CcEEEEEccCCCCCCCCeEEEEECCCCcE
Q 007111 110 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-D-DKNLLIFGGSSKSKTLNDLYSLDFETMIW 187 (617)
Q Consensus 110 IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~-~~~LyV~GG~~~~~~~n~v~~yD~~t~~W 187 (617)
+++.|+.+ ..+.+||..+.+-...- .+.......-.+++.. + +. +++.|+.++ .+.+||+.+++.
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg-----~i~vwd~~~~~~ 241 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGE-FVITVGSDR-----KISCFDGKSGEF 241 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCC-EEEEEETTC-----CEEEEETTTCCE
T ss_pred EEEEEeCC------CcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCC-EEEEEeCCC-----eEEEEECCCCCE
Confidence 67777654 35888998776544321 0110000011233333 3 45 777777764 499999988775
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEE
Q 007111 188 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFL 267 (617)
Q Consensus 188 ~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L 267 (617)
..............-.+++..++..++.|+.. ..+.+||+.+............ + .......+... .+..
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~---~~~~ 311 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQ-Q-LGNQQVGVVAT---GNGR 311 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTT-C-GGGCEEEEEEE---ETTE
T ss_pred eEEecccccccCCceEEEEEcCCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCC-c-ccCceeEEEeC---CCCe
Confidence 54331100001111122222266777777754 3588999987764443221111 1 11122233332 2335
Q ss_pred EEEcCCCCCCCCeEEEEECCCC
Q 007111 268 VAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 268 ~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.|+.++ .|.+||+.+.
T Consensus 312 l~~~~~~g----~i~~~d~~~~ 329 (615)
T 1pgu_A 312 IISLSLDG----TLNFYELGHD 329 (615)
T ss_dssp EEEEETTS----CEEEEETTEE
T ss_pred EEEEECCC----CEEEEECCCC
Confidence 66776653 5788887653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.52 E-value=3.3 Score=46.36 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=74.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC--C--EEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS--S--VLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~--~--~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..++.|+.+. .+.+||.....-..+.. .....+....++.+. + .+++.|+.++ .+.+||+
T Consensus 483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~ 548 (694)
T 3dm0_A 483 DNRQIVSASRDR------TIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNL 548 (694)
T ss_dssp TSSCEEEEETTS------CEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEET
T ss_pred CCCEEEEEeCCC------EEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEEC
Confidence 456666666532 47777776554323321 111122222333332 2 4566666544 4889999
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~ 210 (617)
.+.+-...- .+ ... .-.+++.. +++ +++.||.++ .|.+||+.+++-..... .....++++...+
T Consensus 549 ~~~~~~~~~-~~--h~~-~v~~v~~spdg~-~l~sg~~Dg-----~i~iwd~~~~~~~~~~~-----~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 549 SNCKLRSTL-AG--HTG-YVSTVAVSPDGS-LCASGGKDG-----VVLLWDLAEGKKLYSLE-----ANSVIHALCFSPN 613 (694)
T ss_dssp TTCCEEEEE-CC--CSS-CEEEEEECTTSS-EEEEEETTS-----BCEEEETTTTEEEECCB-----CSSCEEEEEECSS
T ss_pred CCCcEEEEE-cC--CCC-CEEEEEEeCCCC-EEEEEeCCC-----eEEEEECCCCceEEEec-----CCCcEEEEEEcCC
Confidence 877654331 01 111 11123333 445 778888764 38899998876432211 1122334444444
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
..++++|.. ..+.+||+.+..-.
T Consensus 614 ~~~l~~~~~-----~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 614 RYWLCAATE-----HGIKIWDLESKSIV 636 (694)
T ss_dssp SSEEEEEET-----TEEEEEETTTTEEE
T ss_pred CcEEEEEcC-----CCEEEEECCCCCCh
Confidence 444444432 23788888876543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=94.51 E-value=2 Score=42.34 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=88.9
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCeEEEEECC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
+.+++.|+.+ ..+.++|+.+..|..+.. +........++.+ + +.+++.|+.++ .+.+||+.
T Consensus 67 g~~l~s~s~D------~~v~iWd~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d~------~v~~wd~~ 131 (297)
T 2pm7_B 67 GTILASCSYD------GKVMIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPMLLVASSDG------KVSVVEFK 131 (297)
T ss_dssp CSEEEEEETT------TEEEEEEBSSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEEBC
T ss_pred CCEEEEEcCC------CEEEEEEcCCCceEEEEE---eecCCCceeEEEeCcCCCCcEEEEEECCC------cEEEEEec
Confidence 5677777763 258888888776654431 1111111222222 1 45666776543 46777776
Q ss_pred CCc-EEEeecCCCCCCCCcccEEEEE--------------CCcEEEEEccCCCCCCCCeEEEEECCCC--cEEEeecCCC
Q 007111 133 SLT-WLPLHCTGTGPSPRSNHVAALY--------------DDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF 195 (617)
Q Consensus 133 t~~-W~~l~~~g~~P~~R~~h~a~~~--------------~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~W~~~~~~g~ 195 (617)
+.. +......+. .. .-.++... ++. +++.|+.++. |..||+.+. .|........
T Consensus 132 ~~~~~~~~~~~~h-~~--~v~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~-----v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 132 ENGTTSPIIIDAH-AI--GVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNL-----VKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp SSSCBCCEEEECC-SS--CEEEEEECCCC------------CC-EEEEEETTSC-----EEEEEEETTTTEEEEEEEECC
T ss_pred CCCceeeeeeecc-cC--ccceEeecCCcccccccCCCCCCcc-eEEEEcCCCc-----EEEEEEcCCCceEEEEEEecC
Confidence 542 211100000 00 00011111 134 6777887653 777777553 3544433211
Q ss_pred CCCCCcceEEEEEC----CEEEEEecCCCCCccceEEEEECCC--CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEE
Q 007111 196 HPSPRAGCCGVLCG----TKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA 269 (617)
Q Consensus 196 ~P~~R~~ha~v~~~----~~IyI~GG~s~~~~~~~v~~yDl~~--~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I 269 (617)
. ...-.+++... +.+++.|+..+ .+.++|+.. ..|......... .......+.+.. .+.+++
T Consensus 203 H--~~~V~~v~~sp~~~~~~~las~s~D~-----~v~iWd~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~--~g~~la 270 (297)
T 2pm7_B 203 H--SDWVRDVAWSPTVLLRSYMASVSQDR-----TCIIWTQDNEQGPWKKTLLKEEK---FPDVLWRASWSL--SGNVLA 270 (297)
T ss_dssp C--SSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEESSSSC---CSSCEEEEEECS--SSCCEE
T ss_pred C--CCceEEEEECCCCCCceEEEEEECCC-----cEEEEEeCCCCCccceeeeeccc---CCCcEEEEEECC--CCCEEE
Confidence 1 11112233322 36777776543 366777654 335432210000 111223333432 244667
Q ss_pred EcCCCCCCCCeEEEEECCC-Ccc
Q 007111 270 FGGIKKEPSNQVEVLSIEK-NES 291 (617)
Q Consensus 270 ~GG~~~~~~~dV~vyd~~~-~~W 291 (617)
.||.++ .|.+|+... ..|
T Consensus 271 s~~~D~----~v~lw~~~~~g~w 289 (297)
T 2pm7_B 271 LSGGDN----KVTLWKENLEGKW 289 (297)
T ss_dssp EEETTS----CEEEEEECTTSCE
T ss_pred EEcCCC----cEEEEEECCCCcE
Confidence 777654 466666543 345
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.073 Score=64.60 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=17.5
Q ss_pred hHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007111 488 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 532 (617)
Q Consensus 488 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~ 532 (617)
+|.+....+.+++..+..+.+.+++++.++++...+++.++++++
T Consensus 900 ~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~ 944 (1184)
T 1i84_S 900 KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944 (1184)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444444444443333
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.44 E-value=1.7 Score=42.12 Aligned_cols=147 Identities=13% Similarity=0.116 Sum_probs=75.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++..++.|+.+. .+..||.... ...+. ..............++. ++.|+.++ .+.+||..+.+
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~~~-~~~~~---~~~~~~i~~~~~~~~~~-~~~~~~dg------~i~i~d~~~~~ 216 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQNDKV-IKTFS---GIHNDVVRHLAVVDDGH-FISCSNDG------LIKLVDMHTGD 216 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETTEE-EEEEC---SSCSSCEEEEEEEETTE-EEEEETTS------EEEEEETTTCC
T ss_pred CCCEEEEEECCC------CEEEEecCce-EEEEe---ccCcccEEEEEEcCCCe-EEEccCCC------eEEEEECCchh
Confidence 566666666532 4777783221 22222 11222222223334566 66666543 58999998765
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 214 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI 214 (617)
-...-. + . ...-.+++...+. .++.|+.++ .+..||+.+......... +... -.+++.. ++. ++
T Consensus 217 ~~~~~~-~--~-~~~i~~~~~~~~~-~l~~~~~dg-----~v~iwd~~~~~~~~~~~~---~~~~-i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 217 VLRTYE-G--H-ESFVYCIKLLPNG-DIVSCGEDR-----TVRIWSKENGSLKQVITL---PAIS-IWSVDCMSNGD-II 281 (313)
T ss_dssp EEEEEE-C--C-SSCEEEEEECTTS-CEEEEETTS-----EEEEECTTTCCEEEEEEC---SSSC-EEEEEECTTSC-EE
T ss_pred hhhhhh-c--C-CceEEEEEEecCC-CEEEEecCC-----EEEEEECCCCceeEEEec---cCce-EEEEEEccCCC-EE
Confidence 332210 1 1 1111233334444 356676653 499999988876554432 2211 2233333 455 55
Q ss_pred EecCCCCCccceEEEEECCCCcEEE
Q 007111 215 AGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
.|+..+ .+.+||+.+..|..
T Consensus 282 ~~~~dg-----~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 282 VGSSDN-----LVRIFSQEKSRWAS 301 (313)
T ss_dssp EEETTS-----CEEEEESCGGGCCC
T ss_pred EEeCCC-----cEEEEeCCCCceee
Confidence 666543 48899988876654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=94.44 E-value=4.6 Score=40.58 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=110.6
Q ss_pred EEEecCCCCC-ccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEE
Q 007111 2 IVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 2 ~V~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
+++|...... ..-.++.+|+.+.++..+.... ...| .+.+..- +..||+.+.. ........+|.++
T Consensus 16 ~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~--------~~~p---~~l~~spdg~~l~~~~~~-~~~~~~v~~~~~~ 83 (361)
T 3scy_A 16 MLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE--------VANP---SYLIPSADGKFVYSVNEF-SKDQAAVSAFAFD 83 (361)
T ss_dssp EEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE--------CSCC---CSEEECTTSSEEEEEECC-SSTTCEEEEEEEE
T ss_pred EEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc--------CCCC---ceEEECCCCCEEEEEEcc-CCCCCcEEEEEEe
Confidence 4567654321 1123555677888887665420 0111 1112222 3457766543 1112233567777
Q ss_pred CCCCcEEEeeccCCCC-CCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc-EEE----eecCCCCCCC-----
Q 007111 80 TETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLP----LHCTGTGPSP----- 148 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P-~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~----l~~~g~~P~~----- 148 (617)
..+...+.+.. .+ .......++..+..+|+.+ .. ...+.+|++.+.. ... +...+..|.+
T Consensus 84 ~~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~-~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 84 KEKGTLHLLNT---QKTMGADPCYLTTNGKNIVTAN-YS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp TTTTEEEEEEE---EECSSSCEEEEEECSSEEEEEE-TT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred CCCCcEEEeeE---eccCCCCcEEEEECCCEEEEEE-CC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 77777776652 22 1222233333334566543 21 2458888886432 111 1111222211
Q ss_pred CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc-------EEEe-----ecCCCCCCCCcceEEEEE-CC-EEE
Q 007111 149 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRI-----KIRGFHPSPRAGCCGVLC-GT-KWY 213 (617)
Q Consensus 149 R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~-------W~~~-----~~~g~~P~~R~~ha~v~~-~~-~Iy 213 (617)
..-|.+++. +++++|+.+..+ +.+++|++.... .... ... +....-..++.. ++ .+|
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGT-----DQIHKFNINPNANADNKEKFLTKGTPEAFKV---APGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTCCTTTCCCCEEEEEEEEEEC---CTTCCEEEEEECTTSSEEE
T ss_pred CcceEEEECCCCCEEEEEeCCC-----CEEEEEEEcCCCCcccccceeecccccceec---CCCCCCeEEEEcCCCCEEE
Confidence 111334443 455566654322 357777765433 2111 111 111111223333 44 577
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
+.+... +.+.+||+.+..+..+...... +....+...+.+..+ ...||+.+... .+.|.+|++.
T Consensus 227 v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~-~~~~~~~~~i~~spd-g~~l~v~~~~~---~~~i~v~~~~ 290 (361)
T 3scy_A 227 LINEIG-----GTVIAFRYADGMLDEIQTVAAD-TVNAQGSGDIHLSPD-GKYLYASNRLK---ADGVAIFKVD 290 (361)
T ss_dssp EEETTT-----CEEEEEEEETTEEEEEEEEESC-SSCCCCEEEEEECTT-SSEEEEEECSS---SCEEEEEEEC
T ss_pred EEcCCC-----CeEEEEEecCCceEEeEEEecC-CCCCCCcccEEECCC-CCEEEEECCCC---CCEEEEEEEc
Confidence 765322 3588888877776554422211 112223344455433 34566544320 2357777764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.39 Score=57.70 Aligned_cols=193 Identities=9% Similarity=0.042 Sum_probs=92.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+++.++.||.+ ..+.+||..+....... . ....-.+++...+..++.|+.+ ..+.+||..+.+
T Consensus 1014 dg~~l~s~~~d------g~i~vwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~ 1076 (1249)
T 3sfz_A 1014 DGKTLISSSED------SVIQVWNWQTGDYVFLQ---A--HQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGR 1076 (1249)
T ss_dssp SSSCEEEECSS------SBEEEEETTTTEEECCB---C--CSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTC
T ss_pred CCCEEEEEcCC------CEEEEEECCCCceEEEe---c--CCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCc
Confidence 55666777653 25888999888765433 1 1111222333334445566553 358899988776
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYI 214 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI 214 (617)
-...-. + ........+..-++. +++.|+.++. +..||..+... +.... .....-.+++.. ++.+++
T Consensus 1077 ~~~~~~-~--~~~~v~~~~~s~d~~-~l~s~s~d~~-----v~iwd~~~~~~--~~~l~--~h~~~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A 1077 IERDFT-C--HQGTVLSCAISSDAT-KFSSTSADKT-----AKIWSFDLLSP--LHELK--GHNGCVRCSAFSLDGILLA 1143 (1249)
T ss_dssp CCEEEE-C--CSSCCCCEEECSSSS-SCEEECCSSC-----CCEECSSSSSC--SBCCC--CCSSCEEEEEECSSSSEEE
T ss_pred eeEEEc-c--cCCcEEEEEECCCCC-EEEEEcCCCc-----EEEEECCCcce--eeeec--cCCCcEEEEEECCCCCEEE
Confidence 332210 1 111111122223455 6677776643 77888766542 11110 011111222222 667777
Q ss_pred EecCCCCCccceEEEEECCCCcEEEeec-CCC-CC-CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 215 AGGGSRKKRHAETLIFDILKGEWSVAIT-SPS-SS-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 215 ~GG~s~~~~~~~v~~yDl~~~~W~~l~~-~~~-~~-p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.|+.++. +.+||+.+........ ... .. .........+.+..+ +.+++.|| +.|.+||+.+.+.
T Consensus 1144 t~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d--g~~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1144 TGDDNGE-----IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD--SKTLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEETTSC-----CCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTT--SSCEEEES------SSEEEBCSSSCBC
T ss_pred EEeCCCE-----EEEEECCCCceEEEeccccccccccccCceEEEEEECCC--CCEEEECC------CeEEEEECCCCce
Confidence 7775533 6788887654222110 000 00 011112333444332 33444554 2688999887664
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=94.41 E-value=4.8 Score=40.64 Aligned_cols=208 Identities=12% Similarity=0.042 Sum_probs=99.5
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
...++++|+.+..-..+... .....+....- ++..+++............+|.+|+.+.....+. .......
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK---THAEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC---CCCTTEE
T ss_pred cceEEEEECCCCceEEeecC----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee---eCCCCcc
Confidence 36899999999876666421 12223333333 4554444443332223568999999887777663 1111111
Q ss_pred ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCC---CCCcceEEEEECCEEEEEe----cCCCCC
Q 007111 151 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP---SPRAGCCGVLCGTKWYIAG----GGSRKK 222 (617)
Q Consensus 151 ~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P---~~R~~ha~v~~~~~IyI~G----G~s~~~ 222 (617)
....+.. +++.|+...... ......++++|+.+++...+...+... ....+.+....+..+++.. |.. ..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~ 317 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK-IE 317 (388)
T ss_dssp EEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------C
T ss_pred cccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc-cC
Confidence 1112222 455354433222 211235999999998877665431100 0001112223333444321 111 11
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCC----CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSV----TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p----~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
....++++|+.+.....+........ ........+.+.. +...|++....++ ...+|.+++....|
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g--~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHG--KPALYLATLPESVW 387 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCC--ceeEEEEECChhcc
Confidence 23579999999988777654322000 0000112223332 2344554444333 34799999887765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.89 Score=46.15 Aligned_cols=198 Identities=8% Similarity=-0.007 Sum_probs=97.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCE-EEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~-lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..++.+|+.+.+...+... +....+....- ++. |++... .........+|.+|+.+..+..+..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~------------~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~- 233 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD------------TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE- 233 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE------------SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-
T ss_pred ceEEEEECCCCcEEeeccC------------CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-
Confidence 4689999998887666531 11122222222 344 444432 1111122479999998887776652
Q ss_pred CCCCCCccee-EEEE-ECCE-EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEcc
Q 007111 92 GDIPVARSGH-TVVR-ASSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGG 167 (617)
Q Consensus 92 g~~P~~R~~~-s~~~-~~~~-IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG 167 (617)
..+.... ..+. -++. |++.+...+. ....++++|+.+.+...+. ..+. .. .+..- +++ ++++++
T Consensus 234 ---~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~---~~~~--~~-~~~s~~dg~-~l~~~~ 301 (396)
T 3c5m_A 234 ---HAEGESCTHEFWIPDGSAMAYVSYFKGQ--TDRVIYKANPETLENEEVM---VMPP--CS-HLMSNFDGS-LMVGDG 301 (396)
T ss_dssp ---CCTTEEEEEEEECTTSSCEEEEEEETTT--CCEEEEEECTTTCCEEEEE---ECCS--EE-EEEECSSSS-EEEEEE
T ss_pred ---cCCCccccceEECCCCCEEEEEecCCCC--ccceEEEEECCCCCeEEee---eCCC--CC-CCccCCCCc-eEEEec
Confidence 1111111 1222 2444 4444322221 1245999999988877764 2221 11 22223 566 555544
Q ss_pred CCC-----------CCCCCeEEEEECCCCcEEEeecCCCCC-----C-CCcceEEEE-ECC-EEEEEecCCCCCccceEE
Q 007111 168 SSK-----------SKTLNDLYSLDFETMIWTRIKIRGFHP-----S-PRAGCCGVL-CGT-KWYIAGGGSRKKRHAETL 228 (617)
Q Consensus 168 ~~~-----------~~~~n~v~~yD~~t~~W~~~~~~g~~P-----~-~R~~ha~v~-~~~-~IyI~GG~s~~~~~~~v~ 228 (617)
.+. ......++++|+.++....+....... . .......+. -++ .|++.+...+ ...+|
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~---~~~l~ 378 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG---VPAIY 378 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SCEEE
T ss_pred CCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC---CceEE
Confidence 320 012357999999888776665431100 0 000111122 234 5555543322 24689
Q ss_pred EEECCCCcEEEe
Q 007111 229 IFDILKGEWSVA 240 (617)
Q Consensus 229 ~yDl~~~~W~~l 240 (617)
.+|+....++.+
T Consensus 379 ~~~~~~~~~~~~ 390 (396)
T 3c5m_A 379 IADVPESYKHLE 390 (396)
T ss_dssp EEECCTTCC---
T ss_pred EEEEcccccccc
Confidence 999888776664
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.35 E-value=5.1 Score=40.67 Aligned_cols=166 Identities=15% Similarity=0.112 Sum_probs=84.1
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
.+.+||+.+......-. + ..... .++... ++.+++.||.++ .+.+||+.+.+....- .... ..
T Consensus 177 ~v~lwd~~~~~~~~~~~-~--h~~~v-~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~---~~h~-~~ 242 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFH-G--HGADV-LCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAF---ETHE-SD 242 (354)
T ss_dssp EEEEEETTTCCEEEEEE-C--CSSCE-EEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEE---CCCS-SC
T ss_pred cEEEEeCCCCeEEEEEc-C--CCCCe-EEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCC-CC
Confidence 58888988776432210 0 11111 111111 346778887654 3889999888765431 1111 11
Q ss_pred ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceE
Q 007111 151 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAET 227 (617)
Q Consensus 151 ~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v 227 (617)
-.+++.. ++. +++.|+.++. +..||+.+..-...... .........+.+ ++.+++.|+..+ .+
T Consensus 243 v~~v~~~p~~~-~l~s~s~D~~-----v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~-----~i 308 (354)
T 2pbi_B 243 VNSVRYYPSGD-AFASGSDDAT-----CRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDY-----TI 308 (354)
T ss_dssp EEEEEECTTSS-EEEEEETTSC-----EEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTS-----CE
T ss_pred eEEEEEeCCCC-EEEEEeCCCe-----EEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCC-----cE
Confidence 1122233 345 7788887654 88999987754433221 111222233333 566777776543 48
Q ss_pred EEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC
Q 007111 228 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 228 ~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~ 275 (617)
.+||+.+..-.... . ........+.+.. ++.+++.|+.++
T Consensus 309 ~vwd~~~~~~~~~l--~----~h~~~v~~l~~sp--dg~~l~sgs~D~ 348 (354)
T 2pbi_B 309 NVWDVLKGSRVSIL--F----GHENRVSTLRVSP--DGTAFCSGSWDH 348 (354)
T ss_dssp EEEETTTCSEEEEE--C----CCSSCEEEEEECT--TSSCEEEEETTS
T ss_pred EEEECCCCceEEEE--E----CCCCcEEEEEECC--CCCEEEEEcCCC
Confidence 89998665422211 1 0112233444432 244667777654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.69 Score=46.04 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=106.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEEC----CEEEEEcccCCCCCCceEEEEEECCCCc--EEE
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG----KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSV 87 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g----~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~ 87 (617)
..+.+||..+.......... .... -.++.... +.+++.|+.+ ..+.+||..+.. ...
T Consensus 44 ~~v~iw~~~~~~~~~~~~~~----------~~~~-v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~ 106 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREIE----------KAKP-IKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPEMPVYS 106 (357)
T ss_dssp EEEEEEEECSSSEEEEEEEE----------ESSC-EEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCSSCSEE
T ss_pred cEEEEEeCCCCcccceeeec----------ccCc-EEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCCccEEE
Confidence 36888998887765443210 0000 12222222 3667777653 247888887664 222
Q ss_pred eeccCCCCCCcceeEEEE-------ECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEE--
Q 007111 88 VEAKGDIPVARSGHTVVR-------ASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAAL-- 156 (617)
Q Consensus 88 ~~~~g~~P~~R~~~s~~~-------~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~-- 156 (617)
+. ..... -.++.. .++.+++.|+.++ .+.+||+.+.. ...+... .....+.-.+++.
T Consensus 107 ~~---~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 107 VK---GHKEI--INAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGN 174 (357)
T ss_dssp EC---CCSSC--EEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEEC
T ss_pred EE---ecccc--eEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEe
Confidence 21 00111 111111 2456677776644 48889988764 3333210 0001111112221
Q ss_pred ---ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----CCEEEEEecCCCCCccceEEE
Q 007111 157 ---YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWYIAGGGSRKKRHAETLI 229 (617)
Q Consensus 157 ---~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~----~~~IyI~GG~s~~~~~~~v~~ 229 (617)
-++. +++.|+.++ .+..||+.+..-...... ...-.+++.. ++..+++|+..+ .+.+
T Consensus 175 ~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i 238 (357)
T 3i2n_A 175 AYNQEER-VVCAGYDNG-----DIKLFDLRNMALRWETNI-----KNGVCSLEFDRKDISMNKLVATSLEG-----KFHV 238 (357)
T ss_dssp CCC-CCC-EEEEEETTS-----EEEEEETTTTEEEEEEEC-----SSCEEEEEESCSSSSCCEEEEEESTT-----EEEE
T ss_pred ccCCCCC-EEEEEccCC-----eEEEEECccCceeeecCC-----CCceEEEEcCCCCCCCCEEEEECCCC-----eEEE
Confidence 2455 677776653 599999988775443322 1222333333 456677776543 4777
Q ss_pred EECCCCc----EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 230 FDILKGE----WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 230 yDl~~~~----W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
||+.+.. +..... .........+.+. .+...+++.|+.++ .|.+||+....
T Consensus 239 ~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~-~~~~~~l~~~~~dg----~i~iwd~~~~~ 293 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSE-----KAHKSTVWQVRHL-PQNRELFLTAGGAG----GLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEETTTEEEEEEE-----ECCSSCEEEEEEE-TTEEEEEEEEETTS----EEEEEEEECCS
T ss_pred EeCcCCCcccceeeecc-----CCCcCCEEEEEEC-CCCCcEEEEEeCCC----cEEEeecCCCc
Confidence 7765421 111000 0111223333333 22233777887754 68888887654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=94.31 E-value=2.5 Score=41.89 Aligned_cols=193 Identities=13% Similarity=-0.013 Sum_probs=96.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+|+.+-. ...+++||+.+........ +. +. .+++.. ++.+|+.. .+.+++||+.+.
T Consensus 24 ~~~l~~~d~~------~~~i~~~d~~~~~~~~~~~----~~-~~-~~i~~~~dG~l~v~~--------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIP------AKKVCRWDSFTKQVQRVTM----DA-PV-SSVALRQSGGYVATI--------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETT------TTEEEEEETTTCCEEEEEC----SS-CE-EEEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred CCEEEEEECC------CCEEEEEECCCCcEEEEeC----CC-ce-EEEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence 4688887643 2369999999887655541 21 11 223332 45666542 246999999999
Q ss_pred cEEEeecCCC-CCCCCcccEEEEE-CCcEEEEEccCCC------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 135 TWLPLHCTGT-GPSPRSNHVAALY-DDKNLLIFGGSSK------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 135 ~W~~l~~~g~-~P~~R~~h~a~~~-~~~~LyV~GG~~~------~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
+++.+..... .+..+.. .+++. +++ +|+..-... ......+|++|+. +....+... ...-..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~-di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~-----~~~pngi~ 155 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFN-DGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ-----VDISNGLD 155 (297)
T ss_dssp EEEEEEECCTTCSSEEEE-EEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE-----ESBEEEEE
T ss_pred cEEEEEecCCCCCCCCCC-CEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec-----cccccceE
Confidence 8887642211 1222222 22222 455 666321111 1223568999885 344433221 01112333
Q ss_pred EE--CCEEEEEecCCCCCccceEEEEEC--CCCcEEE---eecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 207 LC--GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSV---AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 207 ~~--~~~IyI~GG~s~~~~~~~v~~yDl--~~~~W~~---l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
.. +..+|+..... ..+++||+ .+..... +...+. .......+.+. .++.||+..... +
T Consensus 156 ~spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~----~~~~p~g~~~d--~~G~lwva~~~~----~ 220 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEK----EEQIPDGMCID--AEGKLWVACYNG----G 220 (297)
T ss_dssp ECTTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCG----GGCEEEEEEEB--TTSCEEEEEETT----T
T ss_pred EcCCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCC----CCCCCCeeEEC--CCCCEEEEEcCC----C
Confidence 33 44688876432 45888876 4444321 111110 00111223333 235677654221 2
Q ss_pred eEEEEECCCCcc
Q 007111 280 QVEVLSIEKNES 291 (617)
Q Consensus 280 dV~vyd~~~~~W 291 (617)
.|.+||+++.+.
T Consensus 221 ~v~~~d~~tG~~ 232 (297)
T 3g4e_A 221 RVIRLDPVTGKR 232 (297)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEEEcCCCceE
Confidence 699999986653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.02 Score=63.96 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhcc
Q 007111 551 DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 607 (617)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (617)
++-+++.++...++-++..++|.-..+..+-..+.+.|.|+-|+.++++.++.+|..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577778888888888889999999999999999999999999999999998843
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=4.3 Score=39.31 Aligned_cols=202 Identities=6% Similarity=-0.008 Sum_probs=103.8
Q ss_pred eEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCC-CcceeEEEEE--CCEEEEEeecCCCCCccCe
Q 007111 50 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRA--SSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~-~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~ 125 (617)
++++.. ++.+|+.+... ..+.+||+.......+...+..+. ......++.. ++.+|+.+... ...
T Consensus 33 ~~v~~~~~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~ 101 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQ 101 (286)
T ss_dssp EEEEECTTCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCE
T ss_pred ceEEECCCCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCE
Confidence 334433 46788876431 369999988665545542221111 1233445543 57888876321 246
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG 205 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~ 205 (617)
+.+||+.......+. . +....-+.+++..+..+|+..... +.+++||+.......+...+ ....-.++
T Consensus 102 i~~~d~~g~~~~~~~---~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~---~~~~p~~i 169 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFG---A-TILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSK---HLEFPNGV 169 (286)
T ss_dssp EEEECTTSCEEEEEC---T-TTCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTT---TCSSEEEE
T ss_pred EEEECCCCcEEEEec---C-ccCCCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCC---ccCCcEEE
Confidence 899996554444342 1 111111233333333388875433 46999998765544443211 11111233
Q ss_pred EEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 206 VLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 206 v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
+.. ++.+|+.+... ..+++||+.......+.... .......+.+.. ++.||+....++ ..|.+|
T Consensus 170 ~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~g-----~~~~p~~i~~d~--~G~l~v~~~~~~---~~i~~~ 234 (286)
T 1q7f_A 170 VVNDKQEIFISDNRA-----HCVKVFNYEGQYLRQIGGEG-----ITNYPIGVGINS--NGEILIADNHNN---FNLTIF 234 (286)
T ss_dssp EECSSSEEEEEEGGG-----TEEEEEETTCCEEEEESCTT-----TSCSEEEEEECT--TCCEEEEECSSS---CEEEEE
T ss_pred EECCCCCEEEEECCC-----CEEEEEcCCCCEEEEEccCC-----ccCCCcEEEECC--CCCEEEEeCCCC---EEEEEE
Confidence 333 57898876432 46899998765544443110 011223344432 356777664321 268888
Q ss_pred ECCCC
Q 007111 285 SIEKN 289 (617)
Q Consensus 285 d~~~~ 289 (617)
|+...
T Consensus 235 ~~~g~ 239 (286)
T 1q7f_A 235 TQDGQ 239 (286)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 86543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=94.22 E-value=4.2 Score=39.17 Aligned_cols=177 Identities=9% Similarity=0.005 Sum_probs=94.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+. .++..... +.....-++++.. ++++|+.+.. ...+++||+. ........
T Consensus 83 ~~v~~~d~~-g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~-- 141 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPL-----------PQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDL-- 141 (300)
T ss_dssp TEEEEECTT-SCEEEEEC-----------SSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEEC--
T ss_pred CeEEEECCC-CCeEEecC-----------CCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccC--
Confidence 357888877 66654432 1111122444444 5788877532 1369999988 66655431
Q ss_pred CCC-CCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEEC-CcEEEEEccCC
Q 007111 93 DIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P-~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~-~~~LyV~GG~~ 169 (617)
+ .....+.++.. ++.+|+.... ...+++||+ +.++..+.. |..........++ +..+|+.....
T Consensus 142 --~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~ 208 (300)
T 2qc5_A 142 --PNKGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIMG 208 (300)
T ss_dssp --SSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETTT
T ss_pred --CCCCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccCC
Confidence 2 12233344443 4677775421 246899998 677776532 2211122233332 33377764322
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
+.+++||+ ++.+...... ..... .+++.. ++.+|+..... +.+.+||+ +......
T Consensus 209 -----~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 209 -----NKIGRITT-TGEISEYDIP----TPNARPHAITAGKNSEIWFTEWGA-----NQIGRITN-DNTIQEY 265 (300)
T ss_dssp -----TEEEEECT-TCCEEEEECS----STTCCEEEEEECSTTCEEEEETTT-----TEEEEECT-TSCEEEE
T ss_pred -----CEEEEEcC-CCcEEEEECC----CCCCCceEEEECCCCCEEEeccCC-----CeEEEECC-CCcEEEE
Confidence 35999998 6677665432 11222 233333 56788876322 45889998 4555554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.95 Score=44.91 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=78.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++++|+.++.. ..++++|+.+.+....-. .+.....+.++.. ++ .+|+.++. ...+++||+.+
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence 66788887652 379999999887543321 2221112233333 33 67776532 35699999998
Q ss_pred CcEEEeecCCCCCC--CCcccEEEEE-CCcEEEEEccC---CCC---CCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 134 LTWLPLHCTGTGPS--PRSNHVAALY-DDKNLLIFGGS---SKS---KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 134 ~~W~~l~~~g~~P~--~R~~h~a~~~-~~~~LyV~GG~---~~~---~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
.+....-..+..|. ...-+.+++. +++++|+.+.. ... ...+.+++||+.++.-....... +.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~ 152 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYL 152 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCC
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccc
Confidence 87553211111110 1111233333 45546655421 000 01257999999774321111000 11222223
Q ss_pred EEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 205 GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 205 ~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
++.. ++++|+.++ ++++||+.+.....
T Consensus 153 ~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 153 MRAADDGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp EEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred eeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence 3332 556777432 28888887765443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=94.15 E-value=1.6 Score=45.02 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=75.5
Q ss_pred EEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcE
Q 007111 58 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTW 136 (617)
Q Consensus 58 ~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W 136 (617)
.+++.|+.+ ..+.+||+.+......-. .......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 145 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 145 NVLLSAGCD------NVILVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTV 210 (402)
T ss_dssp TEEEEEETT------SCEEEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEE
T ss_pred CEEEEEcCC------CEEEEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCce
Confidence 577777753 248889998876543320 00111111222222 56677777654 3589999988764
Q ss_pred EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE--CCEEE
Q 007111 137 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC--GTKWY 213 (617)
Q Consensus 137 ~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W-~~~~~~g~~P~~R~~ha~v~~--~~~Iy 213 (617)
...-..+ ........++...+..+++.|.... .-..+.+||+.+..- ...... .......+++.. +..+|
T Consensus 211 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 211 VAEKDRP--HEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEEEECS--SCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEE
T ss_pred eeeeccC--CCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEE
Confidence 4321011 1111122344444443666662100 124689999876432 111111 111112233333 44566
Q ss_pred EEecCCCCCccceEEEEECCCCc
Q 007111 214 IAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+.|+..+ .+.+||+.+..
T Consensus 284 ~~g~~dg-----~i~i~d~~~~~ 301 (402)
T 2aq5_A 284 LCGKGDS-----SIRYFEITSEA 301 (402)
T ss_dssp EEETTCS-----CEEEEEECSST
T ss_pred EEEcCCC-----eEEEEEecCCC
Confidence 6665443 47888887765
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=94.14 E-value=4.5 Score=39.27 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=70.2
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCC-------cEEEeeccCCCCCCcceeEEEEE--C--CEEEEEeecCCCCCccCe
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETE-------CWSVVEAKGDIPVARSGHTVVRA--S--SVLILFGGEDGKRRKLND 125 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~-------~W~~~~~~g~~P~~R~~~s~~~~--~--~~IYv~GG~~~~~~~~~~ 125 (617)
+.+++.|+.+. .+.+||+.+. .|..+.. +.........+.+ + +.+++.|+.++ .
T Consensus 71 ~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~ 135 (351)
T 3f3f_A 71 GRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGLKLACLGNDG------I 135 (351)
T ss_dssp CSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTC------E
T ss_pred CCEEEEEcCCC------eEEEEecCCCcccccccCcceeee---ecccCCceeEEEEcCCCCCcEEEEecCCC------c
Confidence 66777777632 3666666553 3444432 1111122222222 2 56677776543 4
Q ss_pred EEEEECCCCc----EEEe---ecCCCCCCCC-cccEEEEE-C----CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 126 LHMFDLKSLT----WLPL---HCTGTGPSPR-SNHVAALY-D----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 126 v~~yD~~t~~----W~~l---~~~g~~P~~R-~~h~a~~~-~----~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
+.+||+.+.. |... ......+... ....+..+ . +. +++.|+.++ .+..++.....+..+..
T Consensus 136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~-----~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQ-----AIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTE-----EEEEEECTTSCEEEEEE
T ss_pred EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCC-----cEEEEccCCCceeeeee
Confidence 8888887653 3211 1000111111 11122222 2 45 677777653 25556666666655544
Q ss_pred CCCCCCCCcceEEEEE-CC----EEEEEecCCCCCccceEEEEECCC
Q 007111 193 RGFHPSPRAGCCGVLC-GT----KWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 193 ~g~~P~~R~~ha~v~~-~~----~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
.... ...-.+++.. ++ .+++.|+..+. +.+||+..
T Consensus 210 ~~~h--~~~i~~~~~~p~~~~~~~~l~s~~~dg~-----i~iwd~~~ 249 (351)
T 3f3f_A 210 LPGH--KSLIRSISWAPSIGRWYQLIATGCKDGR-----IRIFKITE 249 (351)
T ss_dssp CCCC--CSCEEEEEECCCSSCSSEEEEEEETTSC-----EEEEEEEE
T ss_pred cCCC--CcceeEEEECCCCCCcceEEEEEcCCCe-----EEEEeCCC
Confidence 3111 1112233333 33 67777776543 55666543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.10 E-value=8.9 Score=42.50 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCCCcc---eeEEEEECCEEEEEeecCCCCCccCeE
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARS---GHTVVRASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~~R~---~~s~~~~~~~IYv~GG~~~~~~~~~~v 126 (617)
-++.++.||+.+.. ..++.+|..+.+ |+.-..........+ ..+.++.++.||+.. ....+
T Consensus 64 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-------~dg~l 129 (582)
T 1flg_A 64 AIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-------LDASV 129 (582)
T ss_dssp CEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-------TTTEE
T ss_pred cEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe-------CCCEE
Confidence 35679999998763 139999998775 877542111000111 123456788888753 12469
Q ss_pred EEEECCCCc--EEEeecCCCCCCCCc--ccEEEEECC----cEEEEEccCCC-CCCCCeEEEEECCCCc--EEEe
Q 007111 127 HMFDLKSLT--WLPLHCTGTGPSPRS--NHVAALYDD----KNLLIFGGSSK-SKTLNDLYSLDFETMI--WTRI 190 (617)
Q Consensus 127 ~~yD~~t~~--W~~l~~~g~~P~~R~--~h~a~~~~~----~~LyV~GG~~~-~~~~n~v~~yD~~t~~--W~~~ 190 (617)
+.+|..+.+ |+.-. +. +...+ ..+-++.++ +.++++|.... ...-..++.||+.+++ |+..
T Consensus 130 ~AlD~~TG~~~W~~~~--~~-~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 130 VALNKNTGKVVWKKKF--AD-HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEEESSSCCEEEEEEC--SC-GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCCEEeeecC--CC-CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 999998875 98542 11 11111 112233444 21333443211 1123569999998765 8653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.10 E-value=1.8 Score=43.71 Aligned_cols=203 Identities=9% Similarity=0.044 Sum_probs=99.4
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCE-EEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~-IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 149 (617)
...++++|+.+.....+.. ......+....- ++. |++.. ..........++.+|+.+..+..+. . ..+.
T Consensus 167 ~~~l~~~d~~~g~~~~~~~----~~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~---~-~~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ----DTAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIK---E-HAEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESS---C-CCTT
T ss_pred cceEEEEECCCCcEEeecc----CCcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEee---c-cCCC
Confidence 3479999999988776652 111122222222 344 44443 2222122367999999888887763 1 1111
Q ss_pred cccE-EEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC------
Q 007111 150 SNHV-AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR------ 220 (617)
Q Consensus 150 ~~h~-a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~------ 220 (617)
.... .+.. +++.|++. +.........+++||+.++....+... + ... ....- +++++++++...
T Consensus 238 ~~~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~g~~~~l~~~---~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYV-SYFKGQTDRVIYKANPETLENEEVMVM---P--PCS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp EEEEEEEECTTSSCEEEE-EEETTTCCEEEEEECTTTCCEEEEEEC---C--SEE-EEEECSSSSEEEEEECCC------
T ss_pred ccccceEECCCCCEEEEE-ecCCCCccceEEEEECCCCCeEEeeeC---C--CCC-CCccCCCCceEEEecCCcceeecc
Confidence 1111 2222 45534433 322222223499999999887776543 2 111 11222 566666544210
Q ss_pred -----CCccceEEEEECCCCcEEEeecCCCCC----CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 221 -----KKRHAETLIFDILKGEWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 221 -----~~~~~~v~~yDl~~~~W~~l~~~~~~~----p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
......++++|+.+.....+....... ...........+.. +...|++.....+ ...+|.+++.+..+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~--~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEG--VPAIYIADVPESYK 387 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTS--SCEEEEEECCTTCC
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCC--CceEEEEEEccccc
Confidence 112357999999887766654322100 00000011112322 2344554443332 34789999887765
Q ss_pred cc
Q 007111 292 SM 293 (617)
Q Consensus 292 ~~ 293 (617)
+.
T Consensus 388 ~~ 389 (396)
T 3c5m_A 388 HL 389 (396)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=93.98 E-value=5.3 Score=39.47 Aligned_cols=178 Identities=8% Similarity=0.051 Sum_probs=91.1
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCC-cEEEeec
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~ 90 (617)
..++++|+.+.+ |+.-... .....+..+.-++++|+.+. ..++.||+... .|+...
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~------------~~~~~~~~~~pdG~ilvs~~--------~~V~~~d~~G~~~W~~~~- 73 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEK------------GWECNSVAATKAGEILFSYS--------KGAKMITRDGRELWNIAA- 73 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCT------------TCCCCEEEECTTSCEEEECB--------SEEEEECTTSCEEEEEEC-
T ss_pred CEEEEEECCCCeEEEEeCCCc------------cCCCcCeEECCCCCEEEeCC--------CCEEEECCCCCEEEEEcC-
Confidence 468999997765 7654421 01112233334677887321 35999999332 376443
Q ss_pred cCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCc-EEEeecCCCC--CCCCcccEEEEECCcEEEEEc
Q 007111 91 KGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTG--PSPRSNHVAALYDDKNLLIFG 166 (617)
Q Consensus 91 ~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~--P~~R~~h~a~~~~~~~LyV~G 166 (617)
+.....+++... ++.+++..+.. ...++.+|+.... |+.- ..+.. +...........++. +++..
T Consensus 74 ----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~-~~~~~~~~~~~~~~v~~~~~G~-~lv~~ 142 (276)
T 3no2_A 74 ----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTE-FETGIERPHAQFRQINKNKKGN-YLVPL 142 (276)
T ss_dssp ----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEE-ECCSCSSGGGSCSCCEECTTSC-EEEEE
T ss_pred ----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEe-ccCCCCcccccccCceECCCCC-EEEEe
Confidence 211122333333 45665554321 2357888885543 5432 11121 111122233334566 55544
Q ss_pred cCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCC--cEEEe
Q 007111 167 GSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVA 240 (617)
Q Consensus 167 G~~~~~~~n~v~~yD~~t~-~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~--~W~~l 240 (617)
..+ ..+..||++.. .|+.-.. ..+ +++... ++.++|++... ..++.+|+.+. .|+.-
T Consensus 143 ~~~-----~~v~~~d~~G~~~w~~~~~----~~~---~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 143 FAT-----SEVREIAPNGQLLNSVKLS----GTP---FSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp TTT-----TEEEEECTTSCEEEEEECS----SCC---CEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEE
T ss_pred cCC-----CEEEEECCCCCEEEEEECC----CCc---cceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEec
Confidence 322 35999999732 2543221 111 233444 77888876643 35899999854 47764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=4.8 Score=38.96 Aligned_cols=197 Identities=9% Similarity=0.055 Sum_probs=101.4
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeE
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v 126 (617)
++++.. ++++|+.+... ...+.+||........+.. +.....+.++.. ++.+|+.... ...+
T Consensus 80 ~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------~~~i 144 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRV 144 (286)
T ss_dssp EEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEE
T ss_pred eEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------CCEE
Confidence 344442 67899886321 1368999965554444431 222223344443 4678886532 2568
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 127 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 127 ~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
++||+.......+...+.+.. -..+++..+..+|+.+..+ +.|++||+.......+...+.. ..-.+++
T Consensus 145 ~~~~~~g~~~~~~~~~~~~~~---p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~ 213 (286)
T 1q7f_A 145 IIFDQNGNVLHKFGCSKHLEF---PNGVVVNDKQEIFISDNRA-----HCVKVFNYEGQYLRQIGGEGIT---NYPIGVG 213 (286)
T ss_dssp EEECTTSCEEEEEECTTTCSS---EEEEEECSSSEEEEEEGGG-----TEEEEEETTCCEEEEESCTTTS---CSEEEEE
T ss_pred EEEcCCCCEEEEeCCCCccCC---cEEEEECCCCCEEEEECCC-----CEEEEEcCCCCEEEEEccCCcc---CCCcEEE
Confidence 999987665554431111111 1233333333488875433 4599999866544444322111 1112333
Q ss_pred EE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 207 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 207 ~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
.. ++.+|+...... ..+.+||........+.... .......+.+.. ++.+|+... + +.|.+|+
T Consensus 214 ~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~~-----~~~~~~~i~~~~--~g~l~vs~~-~----~~v~v~~ 277 (286)
T 1q7f_A 214 INSNGEILIADNHNN----FNLTIFTQDGQLISALESKV-----KHAQCFDVALMD--DGSVVLASK-D----YRLYIYR 277 (286)
T ss_dssp ECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEESS-----CCSCEEEEEEET--TTEEEEEET-T----TEEEEEE
T ss_pred ECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEcccC-----CCCcceeEEECC--CCcEEEECC-C----CeEEEEE
Confidence 33 678888865431 15889997665444443211 111122333432 356887742 2 4788887
Q ss_pred CCC
Q 007111 286 IEK 288 (617)
Q Consensus 286 ~~~ 288 (617)
...
T Consensus 278 ~~~ 280 (286)
T 1q7f_A 278 YVQ 280 (286)
T ss_dssp CSC
T ss_pred ccc
Confidence 644
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=93.92 E-value=4.8 Score=38.75 Aligned_cols=213 Identities=10% Similarity=-0.008 Sum_probs=112.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..+.+||+. .++..... | .....-++++.. ++.+|+.... ...+++||+. ..+.......
T Consensus 41 ~~v~~~~~~-~~~~~~~~-----~------~~~~~~~~i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~~~~~ 101 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEV-----P------TPDAKVMCLIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEYPLPQ 101 (300)
T ss_dssp TEEEEECTT-SCEEEEEC-----S------STTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEECSS
T ss_pred CeEEEECCC-CceEEEEC-----C------CCCCcceeEEECCCCCEEEEecC------CCeEEEECCC-CCeEEecCCC
Confidence 457888887 66655432 0 011112344443 4678887532 1369999998 7776554211
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCC-CcccEEEEE-CCcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP-RSNHVAALY-DDKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~h~a~~~-~~~~LyV~GG~~ 169 (617)
.....+.++.. ++.+|+.... ...+++||+. .+..... ++.. ..-+.++.. +++ +|+.....
T Consensus 102 ---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~----~~~~~~~~~~i~~d~~g~-l~v~~~~~ 166 (300)
T 2qc5_A 102 ---PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD----LPNKGSYPAFITLGSDNA-LWFTENQN 166 (300)
T ss_dssp ---TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE----CSSTTCCEEEEEECTTSS-EEEEETTT
T ss_pred ---CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc----CCCCCCCceeEEECCCCC-EEEEecCC
Confidence 12233444443 5688876421 2468999988 6666543 1211 112233333 345 77765322
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 247 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~ 247 (617)
+.+++||+ ++.+..+... ..... ..++.. ++.+|+..... ..+++||+ +..+..... +
T Consensus 167 -----~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~-~--- 226 (300)
T 2qc5_A 167 -----NSIGRITN-TGKLEEYPLP----TNAAAPVGITSGNDGALWFVEIMG-----NKIGRITT-TGEISEYDI-P--- 226 (300)
T ss_dssp -----TEEEEECT-TCCEEEEECS----STTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEEC-S---
T ss_pred -----CeEEEECC-CCcEEEeeCC----CCCCCcceEEECCCCCEEEEccCC-----CEEEEEcC-CCcEEEEEC-C---
Confidence 35999999 6777765431 11112 233333 56788875322 35889998 556655432 1
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECC
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 287 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~ 287 (617)
........+.+.. ++.||+.... .+.|.+||+.
T Consensus 227 -~~~~~~~~i~~d~--~g~l~v~~~~----~~~i~~~~~~ 259 (300)
T 2qc5_A 227 -TPNARPHAITAGK--NSEIWFTEWG----ANQIGRITND 259 (300)
T ss_dssp -STTCCEEEEEECS--TTCEEEEETT----TTEEEEECTT
T ss_pred -CCCCCceEEEECC--CCCEEEeccC----CCeEEEECCC
Confidence 1112223334432 3457766532 2467888873
|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.54 Score=41.89 Aligned_cols=88 Identities=27% Similarity=0.320 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccc
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 548 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~ 548 (617)
.-++.+...++.....|..||.+-......||..+......+++|+.+|.++...++...+..+.+..+...
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkk-------- 108 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK-------- 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 467888899999999999999999999999999999999999999999999999999988888888766544
Q ss_pred cCCCcchhhhHHHHHHHHHHHH
Q 007111 549 HSDNVRLEHDVAFLKAVLDDTQ 570 (617)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~ 570 (617)
||.++.-|+.-++|..
T Consensus 109 ------le~e~~~Lk~~led~e 124 (129)
T 2fxo_A 109 ------LEDECSELKRDIDDLE 124 (129)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 5777888887777754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=93.86 E-value=5.7 Score=42.69 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=94.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC------cEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE------CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 128 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~------~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~ 128 (617)
++++++.|+.+ ..+.+||+.+. ....+... ....... .+++. -++..++.+|.+... ...++.
T Consensus 77 ~~~~l~s~~~d------g~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v-~~~~~s~~~~~l~~~~~~~~~--~~~v~~ 146 (615)
T 1pgu_A 77 GSQYLCSGDES------GKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPI-SDISWDFEGRRLCVVGEGRDN--FGVFIS 146 (615)
T ss_dssp TCCEEEEEETT------SEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCE-EEEEECTTSSEEEEEECCSSC--SEEEEE
T ss_pred CCCEEEEecCC------CEEEEEeCCCCcccccccccccchh-hcccccE-EEEEEeCCCCEEEEeccCCCC--ccEEEE
Confidence 45677777653 25777776543 23322210 0111111 12222 245666777655432 356777
Q ss_pred EECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCC-cceEEE
Q 007111 129 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR-AGCCGV 206 (617)
Q Consensus 129 yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R-~~ha~v 206 (617)
||... .-..+. + .... -.+++.. ++..+++.|+.++ .+..||..+......-.. ..... .-.+++
T Consensus 147 ~d~~~-~~~~~~--~--~~~~-v~~~~~~~~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~ 213 (615)
T 1pgu_A 147 WDSGN-SLGEVS--G--HSQR-INACHLKQSRPMRSMTVGDDG-----SVVFYQGPPFKFSASDRT--HHKQGSFVRDVE 213 (615)
T ss_dssp TTTCC-EEEECC--S--CSSC-EEEEEECSSSSCEEEEEETTT-----EEEEEETTTBEEEEEECS--SSCTTCCEEEEE
T ss_pred EECCC-cceeee--c--CCcc-EEEEEECCCCCcEEEEEeCCC-----cEEEEeCCCcceeeeecc--cCCCCceEEEEE
Confidence 77321 112221 1 1111 1122222 2333677777653 589999877654433221 11100 223333
Q ss_pred EE-C-CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEE
Q 007111 207 LC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 284 (617)
Q Consensus 207 ~~-~-~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vy 284 (617)
.. + +..++.|+..+ .+.+||+.+......-..+ ..........+.+. ++.+++.|+.+ ..|.+|
T Consensus 214 ~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~~~~~---~~~~l~~~~~d----~~i~~w 279 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYIEDD--QEPVQGGIFALSWL---DSQKFATVGAD----ATIRVW 279 (615)
T ss_dssp ECSTTCCEEEEEETTC-----CEEEEETTTCCEEEECCBT--TBCCCSCEEEEEES---SSSEEEEEETT----SEEEEE
T ss_pred ECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEeccc--ccccCCceEEEEEc---CCCEEEEEcCC----CcEEEE
Confidence 33 4 67777777653 4889998877654422000 00111223333443 24466677654 368888
Q ss_pred ECCCCc
Q 007111 285 SIEKNE 290 (617)
Q Consensus 285 d~~~~~ 290 (617)
|+.+.+
T Consensus 280 d~~~~~ 285 (615)
T 1pgu_A 280 DVTTSK 285 (615)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 887655
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=93.63 E-value=3 Score=39.78 Aligned_cols=194 Identities=10% Similarity=-0.042 Sum_probs=97.7
Q ss_pred eEEEEE-CCEEEE-EcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeE
Q 007111 50 HSLISW-GKKVLL-VGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 50 hs~v~~-g~~lyV-~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v 126 (617)
++++.. ++++|+ ..+. ...+++||+.+........ ......++++.. ++.+|+... ...+
T Consensus 27 ~~i~~~~~g~l~v~~~~~------~~~i~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~-------~~~i 89 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGM------YGRVVKLATGSTGTTVLPF----NGLYQPQGLAVDGAGTVYVTDF-------NNRV 89 (270)
T ss_dssp EEEEECTTCCEEEEECSS------SCEEEEECC-----EECCC----CSCCSCCCEEECTTCCEEEEET-------TTEE
T ss_pred cceEECCCCCEEEEccCC------CCcEEEecCCCcccceEee----CCcCCcceeEECCCCCEEEEcC-------CCEE
Confidence 344443 567888 4332 2368899987776554431 111222334443 467888754 1368
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 127 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 127 ~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
++||+.+.....+.. .....-+.+++..+..+|+..... +.+++||..+......... ....+ ..++
T Consensus 90 ~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~-~~~~p---~~i~ 156 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRGN-----NRVVKLAAGSKTQTVLPFT-GLNDP---DGVA 156 (270)
T ss_dssp EEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGGG-----TEEEEECTTCCSCEECCCC-SCCSC---CCEE
T ss_pred EEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECCC-----CEEEEEECCCceeEeeccc-cCCCc---eeEE
Confidence 999998776554421 111112233333233388875432 3588998776654433221 11112 2333
Q ss_pred EE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 207 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 207 ~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
.. ++++|+..... ..+++||+........... .......+.+.. ++.||+....+ +.|.+|+
T Consensus 157 ~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~------~~~~p~~i~~d~--~g~l~v~~~~~----~~v~~~~ 219 (270)
T 1rwi_B 157 VDNSGNVYVTDTDN-----NRVVKLEAESNNQVVLPFT------DITAPWGIAVDE--AGTVYVTEHNT----NQVVKLL 219 (270)
T ss_dssp ECTTCCEEEEEGGG-----TEEEEECTTTCCEEECCCS------SCCSEEEEEECT--TCCEEEEETTT----SCEEEEC
T ss_pred EeCCCCEEEEECCC-----CEEEEEecCCCceEeeccc------CCCCceEEEECC--CCCEEEEECCC----CcEEEEc
Confidence 33 56788876432 4588999887654432211 112223334432 34677765432 3688898
Q ss_pred CCCCc
Q 007111 286 IEKNE 290 (617)
Q Consensus 286 ~~~~~ 290 (617)
+....
T Consensus 220 ~~~~~ 224 (270)
T 1rwi_B 220 AGSTT 224 (270)
T ss_dssp TTCSC
T ss_pred CCCCc
Confidence 86643
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=93.59 E-value=3.6 Score=40.84 Aligned_cols=155 Identities=7% Similarity=-0.051 Sum_probs=83.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++++|+.+... ..+++||+.+..+..+.. +......+++.. ++.+|+.+..+.. ....+++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~----~~~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFV----SHKANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEE----CSSSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEee----CCCCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 56788876542 369999999988876642 111223334433 5678876543311 2357999999888
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-E
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-K 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~-~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~ 211 (617)
....+.. .......-..++...+..+|+..... .......+++||+.+.....+... ... ...++.. ++ .
T Consensus 123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~-~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----ISV-ANGIALSTDEKV 195 (333)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----ESS-EEEEEECTTSSE
T ss_pred EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----CCc-ccceEECCCCCE
Confidence 7654321 11111111223333333377654321 112235699999988777665331 011 1233333 33 5
Q ss_pred EEEEecCCCCCccceEEEEECCC
Q 007111 212 WYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
+|+..... ..+++||+.+
T Consensus 196 l~v~~~~~-----~~i~~~d~~~ 213 (333)
T 2dg1_A 196 LWVTETTA-----NRLHRIALED 213 (333)
T ss_dssp EEEEEGGG-----TEEEEEEECT
T ss_pred EEEEeCCC-----CeEEEEEecC
Confidence 77775322 4688999853
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=93.57 E-value=11 Score=42.64 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=80.5
Q ss_pred ceEEEEEECCCCcE--EEeeccCCCCC-CcceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCCC--c-EEEeecCCC
Q 007111 72 RVSVWTFDTETECW--SVVEAKGDIPV-ARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSL--T-WLPLHCTGT 144 (617)
Q Consensus 72 ~~~v~~yd~~t~~W--~~~~~~g~~P~-~R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~--~-W~~l~~~g~ 144 (617)
...+|++++.+..- ..+. ..+. +....... .-+++.+++....... ..+++|++|..+. . |..+.. .
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~l~~--~ 315 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVF---ATPELPKRGHGASVSSDGRWVVITSSEGTD-PVNTVHVARVTNGKIGPVTALIP--D 315 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEE---CCTTCTTCEEEEEECTTSCEEEEEEECTTC-SCCEEEEEEEETTEECCCEEEEC--S
T ss_pred CCEEEEEECCCCchhCEEEe---ccCCCCeEEEEEEECCCCCEEEEEEEccCC-CcceEEEEECCCCCCcccEEecC--C
Confidence 45689999876642 2222 1121 12222222 2245444444333211 3578999999887 6 888741 1
Q ss_pred CCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 007111 145 GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 222 (617)
Q Consensus 145 ~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t--~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~ 222 (617)
.... ...+..++..||+....+ .....++.+|+.+ ..|..+.+.. . .....+...++.+++.....+
T Consensus 316 -~~~~--~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~--~--~~l~~~~~~~~~lv~~~~~dg-- 384 (741)
T 1yr2_A 316 -LKAQ--WDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPES--K--DNLESVGIAGNRLFASYIHDA-- 384 (741)
T ss_dssp -SSSC--EEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCC--S--SEEEEEEEEBTEEEEEEEETT--
T ss_pred -CCce--EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCC--C--CeEEEEEEECCEEEEEEEECC--
Confidence 1111 122234555477765432 2245799999987 5798876431 1 111223444788877765432
Q ss_pred ccceEEEEECCCCcEEEe
Q 007111 223 RHAETLIFDILKGEWSVA 240 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l 240 (617)
...+|.+++....-..+
T Consensus 385 -~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 385 -KSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp -EEEEEEEETTSCEEEEC
T ss_pred -EEEEEEEeCCCCceeec
Confidence 25688999865544443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=7.5 Score=42.53 Aligned_cols=225 Identities=11% Similarity=0.131 Sum_probs=108.5
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEEC--CCCcEEEee
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDT--ETECWSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~--~t~~W~~~~ 89 (617)
+.+.++|..+.+-...-. .... -|+++.. +..+|+.+.. ..+.+||+ .+.+-. .
T Consensus 159 ~~V~v~D~~t~~~~~~i~------------~g~~-~~~v~~spdg~~l~v~~~d-------~~V~v~D~~~~t~~~~--~ 216 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVID------------TGYA-VHISRMSASGRYLLVIGRD-------ARIDMIDLWAKEPTKV--A 216 (543)
T ss_dssp TEEEEEETTTCCEEEEEE------------CSTT-EEEEEECTTSCEEEEEETT-------SEEEEEETTSSSCEEE--E
T ss_pred CeEEEEECCCceEEEEEe------------cCcc-cceEEECCCCCEEEEECCC-------CeEEEEECcCCCCcEE--E
Confidence 468889998876533221 0011 3554333 3466666431 47999999 665432 2
Q ss_pred ccCCCCCCcceeEEEEE-----CCEEEEEeecCCCCCccCeEEEEECCCCcEEE-eecCCC-------CCCCCcccEEEE
Q 007111 90 AKGDIPVARSGHTVVRA-----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGT-------GPSPRSNHVAAL 156 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~-----~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~-------~P~~R~~h~a~~ 156 (617)
.++.......++.- +++.++.++.. .+.+.+||..+.+-.. ++..+. .|.+|..+.+..
T Consensus 217 ---~i~~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 217 ---EIKIGIEARSVESSKFKGYEDRYTIAGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp ---EEECCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred ---EEecCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 12222223333332 44444444332 3468899988876433 221110 022232222222
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEECCC
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
.++..+|+.+..+ +.|+.+|..+.....+... +..+.-+.++.. +++ +|+.+..+ +.+.++|..+
T Consensus 289 ~~~~~~~vs~~~~-----g~i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~-----~~v~v~D~~t 355 (543)
T 1nir_A 289 HEHPEFIVNVKET-----GKVLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAANNS-----NKVAVIDSKD 355 (543)
T ss_dssp SSSSEEEEEETTT-----TEEEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEGGG-----TEEEEEETTT
T ss_pred CCCCEEEEEECCC-----CeEEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEecCC-----CeEEEEECCC
Confidence 3355455554332 4699999876432111111 112222233333 444 55544322 4688899998
Q ss_pred CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 235 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 235 ~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+-...... ...|.+..+.. .+ ..+.+.+|+.+... -+.|-++|..+
T Consensus 356 g~l~~~i~~-g~~ph~g~g~~--~~-~p~~g~~~~s~~~~---d~~V~v~d~~~ 402 (543)
T 1nir_A 356 RRLSALVDV-GKTPHPGRGAN--FV-HPKYGPVWSTSHLG---DGSISLIGTDP 402 (543)
T ss_dssp TEEEEEEEC-SSSBCCTTCEE--EE-ETTTEEEEEEEBSS---SSEEEEEECCT
T ss_pred CeEEEeecc-CCCCCCCCCcc--cC-CCCCccEEEeccCC---CceEEEEEeCC
Confidence 865443211 12233222222 22 33346778776532 23688888876
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=5.7 Score=47.48 Aligned_cols=220 Identities=14% Similarity=0.050 Sum_probs=106.0
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||..+......-. .....-.+++.. ++.+++.||.+ ..+.+||+.+......-.
T Consensus 638 ~i~vw~~~~~~~~~~~~------------~h~~~v~~~~~s~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~--- 696 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLDIK------------AHEDEVLCCAFSSDDSYIATCSAD------KKVKIWDSATGKLVHTYD--- 696 (1249)
T ss_dssp CEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE---
T ss_pred eEEEEECCCCCEEEEec------------cCCCCEEEEEEecCCCEEEEEeCC------CeEEEEECCCCceEEEEc---
Confidence 58889988776432211 001111222222 55666777652 258899998876433321
Q ss_pred CCCCcceeEEEEE----CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 94 IPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 94 ~P~~R~~~s~~~~----~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
.......++.+ ++.+++.|+.++ .+.+||+.+......-. + .... -.+++.. ++. +++.|+.
T Consensus 697 --~~~~~v~~~~~~~~~~~~~l~sg~~d~------~v~vwd~~~~~~~~~~~-~--h~~~-v~~~~~sp~~~-~l~s~s~ 763 (1249)
T 3sfz_A 697 --EHSEQVNCCHFTNKSNHLLLATGSNDF------FLKLWDLNQKECRNTMF-G--HTNS-VNHCRFSPDDE-LLASCSA 763 (1249)
T ss_dssp --CCSSCEEEEEECSSSSCCEEEEEETTS------CEEEEETTSSSEEEEEC-C--CSSC-EEEEEECSSTT-EEEEEES
T ss_pred --CCCCcEEEEEEecCCCceEEEEEeCCC------eEEEEECCCcchhheec-C--CCCC-EEEEEEecCCC-EEEEEEC
Confidence 11112222222 234555555443 48899998877543311 1 1111 1122233 455 7777776
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCC-------CCC--CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGF-------HPS--PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~-------~P~--~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
++ .+..||+.+........... ++. .....+++.. ++..+++++. +.+.+||+.+....
T Consensus 764 dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~------~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 764 DG-----TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK------NKVLLFDIHTSGLL 832 (1249)
T ss_dssp SS-----EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET------TEEEEEETTTCCEE
T ss_pred CC-----eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC------CcEEEEEecCCCce
Confidence 64 48899987765443322110 000 0011111222 4555555542 46889998887654
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
....... ......+.+.. .+.++++|+.++ .|.+||..+..
T Consensus 833 ~~~~~~~-----~~~v~~~~~sp--~~~~l~~~~~dg----~v~vwd~~~~~ 873 (1249)
T 3sfz_A 833 AEIHTGH-----HSTIQYCDFSP--YDHLAVIALSQY----CVELWNIDSRL 873 (1249)
T ss_dssp EEEECSS-----SSCCCEEEECS--STTEEEEECSSS----CEEEEETTTTE
T ss_pred eEEcCCC-----CCceEEEEEcC--CCCEEEEEeCCC----eEEEEEcCCCc
Confidence 4332111 11222233332 234566666543 47777776543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=93.46 E-value=7.3 Score=39.40 Aligned_cols=208 Identities=11% Similarity=0.137 Sum_probs=104.1
Q ss_pred CCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCccee
Q 007111 23 RFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH 101 (617)
Q Consensus 23 t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~ 101 (617)
..+|..+... ...|.. .+.++. -++.+|+.|.. ..+++-.-.-.+|+.+.. +....-+
T Consensus 108 G~tW~~~~~~---------~~~~~~-~~~i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~----~~~~~~~ 166 (327)
T 2xbg_A 108 GQSWSQIPLD---------PKLPGS-PRLIKALGNGSAEMITNV-------GAIYRTKDSGKNWQALVQ----EAIGVMR 166 (327)
T ss_dssp TSSCEECCCC---------TTCSSC-EEEEEEEETTEEEEEETT-------CCEEEESSTTSSEEEEEC----SCCCCEE
T ss_pred CCCceECccc---------cCCCCC-eEEEEEECCCCEEEEeCC-------ccEEEEcCCCCCCEEeec----CCCcceE
Confidence 4578887641 112222 233443 46788887742 136655445678999873 2222334
Q ss_pred EEEEE-CCEEEEEeecCCCCCccCeEEEEECC-CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEE
Q 007111 102 TVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYS 179 (617)
Q Consensus 102 s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~ 179 (617)
.++.. ++.+|++| ..+ .+++-+-. ..+|+.+. .+.+..-+.++...+..+|+.+... .+++
T Consensus 167 ~~~~~~~~~~~~~g-~~G------~~~~S~d~gG~tW~~~~----~~~~~~~~~~~~~~~g~~~~~~~~G------~~~~ 229 (327)
T 2xbg_A 167 NLNRSPSGEYVAVS-SRG------SFYSTWEPGQTAWEPHN----RTTSRRLHNMGFTPDGRLWMIVNGG------KIAF 229 (327)
T ss_dssp EEEECTTSCEEEEE-TTS------SEEEEECTTCSSCEEEE----CCSSSCEEEEEECTTSCEEEEETTT------EEEE
T ss_pred EEEEcCCCcEEEEE-CCC------cEEEEeCCCCCceeECC----CCCCCccceeEECCCCCEEEEeCCc------eEEE
Confidence 44443 45666655 221 24554333 57899884 2333444444444333377776421 2555
Q ss_pred EECC-CCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEE
Q 007111 180 LDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 257 (617)
Q Consensus 180 yD~~-t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v 257 (617)
.+.. ..+|+.+.. +..+.....++++.. ++.+|++|+.. .+++-.-...+|+.+..... .+...++++
T Consensus 230 s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~~~~~~~~~g~~g------~i~~S~DgG~tW~~~~~~~~---~~~~~~~v~ 299 (327)
T 2xbg_A 230 SDPDNSENWGELLS-PLRRNSVGFLDLAYRTPNEVWLAGGAG------ALLCSQDGGQTWQQDVDVKK---VPSNFYKIL 299 (327)
T ss_dssp EETTEEEEECCCBC-TTSSCCSCEEEEEESSSSCEEEEESTT------CEEEESSTTSSCEECGGGTT---SSSCCCEEE
T ss_pred ecCCCCCeeEeccC-CcccCCcceEEEEecCCCEEEEEeCCC------eEEEeCCCCcccEEcCccCC---CCCCeEEEE
Confidence 5433 568987653 111222233444444 56888887631 24433333568998753211 111223333
Q ss_pred EEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 258 LVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 258 ~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
... .+.++++|.. + .|+.++.
T Consensus 300 ~~~---~~~~~~~G~~-G----~i~~~~~ 320 (327)
T 2xbg_A 300 FFS---PDQGFILGQK-G----ILLRYVT 320 (327)
T ss_dssp EEE---TTEEEEECST-T----EEEEECC
T ss_pred EEC---CCceEEEcCC-c----eEEEEcC
Confidence 332 3556666643 2 5666664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=93.42 E-value=6.5 Score=44.49 Aligned_cols=208 Identities=13% Similarity=0.062 Sum_probs=106.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCC--------CCccCeEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLH 127 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~--------~~~~~~v~ 127 (617)
+++.++|+... .+.....++++|+.++.+..... +.... ...+...++.++++..+.. ......++
T Consensus 173 DG~~la~~~~~-~G~e~~~i~v~dl~tg~~~~~~~----~~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 173 DGRLLAYSVQD-GGSDWRTVKFVGVADGKPLADEL----KWVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp TSSEEEEEEEE-TTCSEEEEEEEETTTCCEEEEEE----EEEES-CCCEESTTSEEEEEECCCC--------CCCCCEEE
T ss_pred CCCEEEEEEcC-CCCceEEEEEEECCCCCCCCccC----CCcee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEE
Confidence 56666665432 22334579999999998755421 11111 1122222233333333222 11246789
Q ss_pred EEECCCCcE--EEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC--c-EEEeecCCCCCCCCc
Q 007111 128 MFDLKSLTW--LPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM--I-WTRIKIRGFHPSPRA 201 (617)
Q Consensus 128 ~yD~~t~~W--~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~--~-W~~~~~~g~~P~~R~ 201 (617)
++++.+..- ..+- .....+......... ++++|++.... .....++++++|+.+. . |..+... .....
T Consensus 247 ~~~lgt~~~~~~lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~~-~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~ 320 (741)
T 1yr2_A 247 LHRLGTPQSADQPVF--ATPELPKRGHGASVSSDGRWVVITSSE-GTDPVNTVHVARVTNGKIGPVTALIPD---LKAQW 320 (741)
T ss_dssp EEETTSCGGGCEEEE--CCTTCTTCEEEEEECTTSCEEEEEEEC-TTCSCCEEEEEEEETTEECCCEEEECS---SSSCE
T ss_pred EEECCCCchhCEEEe--ccCCCCeEEEEEEECCCCCEEEEEEEc-cCCCcceEEEEECCCCCCcccEEecCC---CCceE
Confidence 999877652 2221 111112222233333 45545544432 2223578999999877 6 8877653 11222
Q ss_pred ceEEEEECCEEEEEecCCCCCccceEEEEECCC--CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 202 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 202 ~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~--~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
......++.+|+..... .....++.+|+.+ ..|..+... . .. ....+.+. ++.+++....++ ..
T Consensus 321 -~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~--~-~~---~l~~~~~~---~~~lv~~~~~dg--~~ 386 (741)
T 1yr2_A 321 -DFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPE--S-KD---NLESVGIA---GNRLFASYIHDA--KS 386 (741)
T ss_dssp -EEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECC--C-SS---EEEEEEEE---BTEEEEEEEETT--EE
T ss_pred -EEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecC--C-CC---eEEEEEEE---CCEEEEEEEECC--EE
Confidence 22234577888876432 2246799999987 579887521 1 11 12222222 356766655433 34
Q ss_pred eEEEEECCCC
Q 007111 280 QVEVLSIEKN 289 (617)
Q Consensus 280 dV~vyd~~~~ 289 (617)
.++++++...
T Consensus 387 ~l~~~~~~g~ 396 (741)
T 1yr2_A 387 QVLAFDLDGK 396 (741)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEeCCCC
Confidence 7888887543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.22 E-value=7 Score=38.50 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=93.9
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
+.+++.|+.+ ..+.+||..+........ +........++.+ ++.+++.|+.++ .+.+||..+.
T Consensus 54 g~~l~~~~~d------g~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg------~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWA------NDVRCWEVQDSGQTIPKA---QQMHTGPVLDVCWSDDGSKVFTASCDK------TAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETT------SEEEEEEECTTSCEEEEE---EEECSSCEEEEEECTTSSEEEEEETTS------EEEEEETTTT
T ss_pred ceEEEEECCC------CcEEEEEcCCCCceeEEE---eccccCCEEEEEECcCCCEEEEEcCCC------cEEEEEcCCC
Confidence 4788888763 257778877633222110 1111111222222 456666776543 5899999988
Q ss_pred cEEEeecCCCCCCCCcccEEEE--ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 212 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~--~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~I 212 (617)
....... ... .-.+++. ..+..+++.|+.++ .+..||+.+..-...... +....+.....+.+
T Consensus 119 ~~~~~~~---~~~--~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 119 QAIQIAQ---HDA--PVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPMMVLQL-----PERCYCADVIYPMA 183 (368)
T ss_dssp EEEEEEE---CSS--CEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCSEEEEC-----SSCEEEEEEETTEE
T ss_pred Cceeecc---ccC--ceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEEEEEec-----CCCceEEEecCCee
Confidence 8665431 111 1112232 23333777777764 499999877653322221 11223344446655
Q ss_pred EEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEee-cCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQH-KEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~v~v~~-~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.++ . ..+.+||+.... +..+. .+............. ......++.|+.++ .|.+||+...
T Consensus 184 ~~~~~-~-----~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg----~i~i~~~~~~ 248 (368)
T 3mmy_A 184 VVATA-E-----RGLIVYQLENQPSEFRRIE-----SPLKHQHRCVAIFKDKQNKPTGFALGSIEG----RVAIHYINPP 248 (368)
T ss_dssp EEEEG-G-----GCEEEEECSSSCEEEEECC-----CSCSSCEEEEEEEECTTSCEEEEEEEETTS----EEEEEESSCS
T ss_pred EEEeC-C-----CcEEEEEeccccchhhhcc-----ccccCCCceEEEcccCCCCCCeEEEecCCC----cEEEEecCCC
Confidence 55443 2 347788887653 33322 111122222222221 11233467777653 6788888765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=93.20 E-value=8.4 Score=39.34 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=74.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++.+++.||.+. .+.+||+... ....+. . ...... +++. -++.+++.|+.++ .+.+||+.
T Consensus 217 ~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~---~-h~~~v~-~v~~~p~~~~l~s~s~D~------~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT------TVRLWDLRITSRAVRTYH---G-HEGDIN-SVKFFPDGQRFGTGSDDG------TCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS------CEEEEETTTTCCCCEEEC---C-CSSCCC-EEEECTTSSEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEECCC------eEEEEECCCCCcceEEEC---C-cCCCeE-EEEEecCCCeEEEEcCCC------eEEEEECC
Confidence 567888888642 4778887632 222221 0 111111 2222 2466777777654 38899998
Q ss_pred CCcEEEeecCCCC--CCCCc-ccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEee-cCCCCCCCCcceEEEE
Q 007111 133 SLTWLPLHCTGTG--PSPRS-NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK-IRGFHPSPRAGCCGVL 207 (617)
Q Consensus 133 t~~W~~l~~~g~~--P~~R~-~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~-~~g~~P~~R~~ha~v~ 207 (617)
+..-...-..... ..... -.+++.. ++. +++.|+.++ .+.+||..+....... ........+. .+++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~ 352 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGL 352 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTS-----CEEEEETTTCCEEEEECCSCSSCCCCC-CEEEE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCC-----CEEEEECCCCceEEEEecccCCCCCce-EEEEE
Confidence 8764433111010 00000 1223333 455 667776654 4999998776654322 1100111122 22333
Q ss_pred E-CCEEEEEecCCCCCccceEEEEECCC
Q 007111 208 C-GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 208 ~-~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
. ++..++.||..+. +.++++..
T Consensus 353 s~dg~~l~sgs~D~~-----i~iW~~~~ 375 (380)
T 3iz6_a 353 SSDGSALCTGSWDKN-----LKIWAFSG 375 (380)
T ss_dssp CSSSSEEEEECTTSC-----EEEEECCS
T ss_pred CCCCCEEEEeeCCCC-----EEEEecCC
Confidence 2 6677777776543 66666543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.18 E-value=3.1 Score=46.73 Aligned_cols=196 Identities=10% Similarity=0.011 Sum_probs=101.7
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCC-------CCceEEEEEECCCCcE
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG-------SDRVSVWTFDTETECW 85 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~-------~~~~~v~~yd~~t~~W 85 (617)
..++++|+.+++..... ..+.....+++. -+++.++++...... .....+|++++.+..-
T Consensus 147 ~~i~v~dl~tg~~~~~~------------~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~ 214 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVD------------VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS 214 (695)
T ss_dssp CEEEEEETTTCCBCSSC------------CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred EEEEEEECCCCCCcCCc------------ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence 46888888887653110 111111112222 255666665543221 1245699999987752
Q ss_pred --EEeeccCCCCCC-cceeEEE-EECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcE
Q 007111 86 --SVVEAKGDIPVA-RSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN 161 (617)
Q Consensus 86 --~~~~~~g~~P~~-R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~ 161 (617)
..+. ..+.. ....... .-+++.++++..... ..+.+|.+|..+..|..+... .. .....+..++.
T Consensus 215 ~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~----~~-~~~~~~~~~g~- 283 (695)
T 2bkl_A 215 KDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG----VG-AKYEVHAWKDR- 283 (695)
T ss_dssp GCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC----SS-CCEEEEEETTE-
T ss_pred hceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC----CC-ceEEEEecCCc-
Confidence 2332 11221 2222222 224554444443331 246789998877788887521 11 11222335777
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCc---EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEE
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 238 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~---W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~ 238 (617)
+|+....+ .....|+++|+.+.. |..+.... + ...-..++..++.+++.+...+ ...+|.+++......
T Consensus 284 l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 284 FYVLTDEG--APRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDA---TSEVRVATLKGKPVR 355 (695)
T ss_dssp EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETT---EEEEEEEETTCCEEE
T ss_pred EEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECC---EEEEEEEeCCCCeeE
Confidence 77775543 224579999997755 88775421 1 1222233444888888765433 256889997655444
Q ss_pred Ee
Q 007111 239 VA 240 (617)
Q Consensus 239 ~l 240 (617)
.+
T Consensus 356 ~l 357 (695)
T 2bkl_A 356 TV 357 (695)
T ss_dssp EC
T ss_pred Ee
Confidence 43
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=8 Score=42.69 Aligned_cols=111 Identities=15% Similarity=0.195 Sum_probs=60.5
Q ss_pred ceEEEEEC-CCCc--EEEccccccCCCCCCCCCCCc--ccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EE
Q 007111 14 DDVQVLNF-DRFS--WTAASSKLYLSPSSLPLKIPA--CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WS 86 (617)
Q Consensus 14 ~~v~~yd~-~t~~--W~~l~~~~~~~p~~~~~~~p~--r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~ 86 (617)
..++++|. .+.+ |+.-....... .+.+. ....+.+..+++||+.... ..++.+|..+.+ |+
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~~~d-------g~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDAST-----KAVMCCDVVDRGLAYGAGQIVKKQAN-------GHLLALDAKTGKINWE 140 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECTT-------SEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccc-----cccccccccccccEEECCEEEEEeCC-------CEEEEEECCCCCEEEE
Confidence 46999998 6654 97644310000 00000 0112345678899887432 369999998874 87
Q ss_pred EeeccCCCCCC-cceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 87 VVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 87 ~~~~~g~~P~~-R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.-.. ..+.. ....+-++.++.+|+-.+....+ ....++.||+.+.+ |+.-
T Consensus 141 ~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~~~-~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 141 VEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAELG-VRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EECC--CGGGTCBCCSCCEEETTEEEEECBCGGGT-CCCEEEEEETTTCCEEEEEE
T ss_pred ecCC--CCCccceeccCCEEECCEEEEEecCCccC-CCCEEEEEECCCCcEEEEEc
Confidence 5431 11100 11122334688887754322111 24579999999875 8754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=7.9 Score=38.72 Aligned_cols=237 Identities=11% Similarity=0.032 Sum_probs=124.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCC--cEEEeec
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEA 90 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~ 90 (617)
+.+.++|+.+.+....... . ....-+.++.. ++++|+.... ...+++||+... .-..+..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~---------~--~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~ 131 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK---------N--LFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGR 131 (329)
T ss_dssp CCEEEECTTTCCEEEEECT---------T--TCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESB
T ss_pred CcEEEEECCCCeEEeccCC---------C--ccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecc
Confidence 3689999987765432210 0 00112334433 5678887643 236999998765 2223321
Q ss_pred cC---CCC-CCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCC----CCCCc-ccEEEEECC
Q 007111 91 KG---DIP-VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG----PSPRS-NHVAALYDD 159 (617)
Q Consensus 91 ~g---~~P-~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~----P~~R~-~h~a~~~~~ 159 (617)
.+ .-+ .......+++. ++.||+..+.. .+.+.+||+....-..+...+.. +.... -+.+++-.+
T Consensus 132 ~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~ 206 (329)
T 3fvz_A 132 SMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206 (329)
T ss_dssp TTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred cCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence 11 001 11123345554 57999987521 24689999665544433211211 11111 223444433
Q ss_pred -cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC--CCccceEEEEECCCCc
Q 007111 160 -KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--KKRHAETLIFDILKGE 236 (617)
Q Consensus 160 -~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~--~~~~~~v~~yDl~~~~ 236 (617)
..|||....+ +.|.+||+.++++......+ .....-.+++...+.+|...|... ......++++|+.+..
T Consensus 207 ~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 207 LDQLCVADREN-----GRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEECCT--TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEEecc--ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 4588886543 46999999877776544321 122222344444678888777432 2223568999988877
Q ss_pred EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 237 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
....-.. . .........+.+.. ++.|||....+ +.|++|++..
T Consensus 280 ~~~~~~~--~-~~~~~~p~~ia~~~--dG~lyvad~~~----~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKP--V-RKHFDMPHDIVASE--DGTVYIGDAHT----NTVWKFTLTE 322 (329)
T ss_dssp EEEEECC--S-SSCCSSEEEEEECT--TSEEEEEESSS----CCEEEEEEEE
T ss_pred EEEEEcC--C-CCccCCeeEEEECC--CCCEEEEECCC----CEEEEEeCCc
Confidence 5554211 1 11122233444442 35788877543 4788888764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=93.01 E-value=5.8 Score=39.15 Aligned_cols=185 Identities=11% Similarity=0.073 Sum_probs=92.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.+++++.|..+ ..+..+|.++.+ |+.-. +. .......+.-++.||+.+ .+.++.||+
T Consensus 4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~- 63 (276)
T 3no2_A 4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY--------SKGAKMITR- 63 (276)
T ss_dssp CCEEEEECTTC------SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC--------BSEEEEECT-
T ss_pred CCcEEEeeCCC------CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC--------CCCEEEECC-
Confidence 35677776542 368889987775 76543 11 122233333467777732 245999999
Q ss_pred CCc--EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc-EEEeecCCC-CCCCCcceEEEE
Q 007111 133 SLT--WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGF-HPSPRAGCCGVL 207 (617)
Q Consensus 133 t~~--W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~-W~~~~~~g~-~P~~R~~ha~v~ 207 (617)
+.+ |+.-. +....-+++... +++ +++..... ...++.+|+.... |+.....+. .+..........
T Consensus 64 ~G~~~W~~~~-----~~~~~~~~~~~~~dG~-~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 64 DGRELWNIAA-----PAGCEMQTARILPDGN-ALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp TSCEEEEEEC-----CTTCEEEEEEECTTSC-EEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred CCCEEEEEcC-----CCCccccccEECCCCC-EEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC
Confidence 443 77431 211222344444 455 55443321 1358888885442 443221110 010111112223
Q ss_pred ECCEEEEEecCCCCCccceEEEEECCCC-cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 208 CGTKWYIAGGGSRKKRHAETLIFDILKG-EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 208 ~~~~IyI~GG~s~~~~~~~v~~yDl~~~-~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
.++.+++..... ..+..||+... .|+.-. + . ..+++.... .+.++|++..+ +.|..+|+
T Consensus 134 ~~G~~lv~~~~~-----~~v~~~d~~G~~~w~~~~--~-~-----~~~~~~~~~---~g~~~v~~~~~----~~v~~~d~ 193 (276)
T 3no2_A 134 KKGNYLVPLFAT-----SEVREIAPNGQLLNSVKL--S-G-----TPFSSAFLD---NGDCLVACGDA----HCFVQLNL 193 (276)
T ss_dssp TTSCEEEEETTT-----TEEEEECTTSCEEEEEEC--S-S-----CCCEEEECT---TSCEEEECBTT----SEEEEECT
T ss_pred CCCCEEEEecCC-----CEEEEECCCCCEEEEEEC--C-C-----CccceeEcC---CCCEEEEeCCC----CeEEEEeC
Confidence 366666654322 45889998743 366532 1 1 123333332 35566666543 36888888
Q ss_pred CCCc
Q 007111 287 EKNE 290 (617)
Q Consensus 287 ~~~~ 290 (617)
.+.+
T Consensus 194 ~tG~ 197 (276)
T 3no2_A 194 ESNR 197 (276)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 8554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=13 Score=41.70 Aligned_cols=234 Identities=10% Similarity=0.027 Sum_probs=115.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcc--cceEEEEECCEEEEEcccCCC-------CCCceEEEEEECCCCc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC--RGHSLISWGKKVLLVGGKTDS-------GSDRVSVWTFDTETEC 84 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r--~~hs~v~~g~~lyV~GG~~~~-------~~~~~~v~~yd~~t~~ 84 (617)
..++++|+.++++..... +.. .+.+.. .+..||... .... ......+|++++.+..
T Consensus 155 ~~i~v~dl~tg~~~~~~~-------------~~~k~~~~~Ws-Dg~~l~y~~-~~~~~~~~~~~~~~~~~v~~~~lgt~~ 219 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPL-------------KDVKFSGISWL-GNEGFFYSS-YDKPDGSELSARTDQHKVYFHRLGTAQ 219 (693)
T ss_dssp EEEEEEETTTCSEEEEEE-------------EEEESCCCEEE-TTTEEEEEE-SSCCC-------CCCCEEEEEETTSCG
T ss_pred EEEEEEECCCCCCCcccc-------------CCceeccEEEe-CCCEEEEEE-ecCcccccccccCCCcEEEEEECCCCc
Confidence 468888998888654421 111 122223 234455443 2211 1234579999887764
Q ss_pred E--EEeeccCCCCC--CcceeEE-EEECCE-EEEEeecCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCcccEEEE
Q 007111 85 W--SVVEAKGDIPV--ARSGHTV-VRASSV-LILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 85 W--~~~~~~g~~P~--~R~~~s~-~~~~~~-IYv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
= ..+- ..+. ....... ..-+++ |++....... .+.+|++|..+. .|..+.. +... ....+.
T Consensus 220 ~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~~i~~~d~~~~~~~~~~l~~----~~~~-~~~~~~ 288 (693)
T 3iuj_A 220 EDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANSTS---GNRLYVKDLSQENAPLLTVQG----DLDA-DVSLVD 288 (693)
T ss_dssp GGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSSS---CCEEEEEETTSTTCCCEEEEC----SSSS-CEEEEE
T ss_pred ccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCCC---CcEEEEEECCCCCCceEEEeC----CCCc-eEEEEe
Confidence 2 2222 1122 2212222 222444 4444333222 368999998776 6887741 1111 112233
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCC---cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~---~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.++..+|+....+. ....|+.+|+.+. .|+.+.+.. . ... .....++.+++..-..+ ...++++|+.
T Consensus 289 ~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~--~--~~~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~ 358 (693)
T 3iuj_A 289 NKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPER--Q--QVL-TVHSGSGYLFAEYMVDA---TARVEQFDYE 358 (693)
T ss_dssp EETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCC--S--SCE-EEEEETTEEEEEEEETT---EEEEEEECTT
T ss_pred ccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecCC--C--CEE-EEEEECCEEEEEEEECC---eeEEEEEECC
Confidence 34444888766532 2457999999763 488765531 1 112 44555777766543222 2468899988
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
......+.. + ... ....+....+++..+|.+.+.. ....++.||+.+.++
T Consensus 359 g~~~~~l~~-p----~~~-~~~~~~~~~d~~~l~~~~ss~~--tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GKRVREVAL-P----GLG-SVSGFNGKHDDPALYFGFENYA--QPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCEEEEECC-S----SSS-EEEECCCCTTCSCEEEEEECSS--SCCEEEEECTTTCCE
T ss_pred CCeeEEeec-C----CCc-eEEeeecCCCCCEEEEEecCCC--CCCEEEEEECCCCeE
Confidence 665555431 1 111 1111111112223333333332 245788888766553
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.93 E-value=10 Score=42.18 Aligned_cols=189 Identities=9% Similarity=0.098 Sum_probs=94.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++++++.||.+ ..+.+||+.+..-...-. + ..... .+++. .++..++.|+.+. .+.+||....
T Consensus 441 ~g~~l~sgs~D------g~v~vwd~~~~~~~~~~~-~--h~~~v-~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWD------GELRLWDLAAGVSTRRFV-G--HTKDV-LSVAFSLDNRQIVSASRDR------TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE-C--CSSCE-EEEEECTTSSCEEEEETTS------CEEEECTTSC
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcceeEEe-C--CCCCE-EEEEEeCCCCEEEEEeCCC------EEEEEECCCC
Confidence 56777777763 268888988775332210 0 11111 12222 2456677777654 3777887654
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CC--cEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DD--KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT 210 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~--~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~ 210 (617)
.-..+.. .....+..-.++.+ .+ ..+++.|+.++ .|.+||+.+......-.. ....-.+++.. ++
T Consensus 505 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~----h~~~v~~v~~spdg 573 (694)
T 3dm0_A 505 CKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRSTLAG----HTGYVSTVAVSPDG 573 (694)
T ss_dssp EEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEEECC----CSSCEEEEEECTTS
T ss_pred cceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEEEcC----CCCCEEEEEEeCCC
Confidence 3222211 11111111223333 22 12677777764 389999987765433221 11112233333 56
Q ss_pred EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+++.||..+ .+.++|+.+..-.... . ......++.+.. ++.+++.|.. +.|.+||+.+..
T Consensus 574 ~~l~sg~~Dg-----~i~iwd~~~~~~~~~~--~-----~~~~v~~~~~sp--~~~~l~~~~~-----~~i~iwd~~~~~ 634 (694)
T 3dm0_A 574 SLCASGGKDG-----VVLLWDLAEGKKLYSL--E-----ANSVIHALCFSP--NRYWLCAATE-----HGIKIWDLESKS 634 (694)
T ss_dssp SEEEEEETTS-----BCEEEETTTTEEEECC--B-----CSSCEEEEEECS--SSSEEEEEET-----TEEEEEETTTTE
T ss_pred CEEEEEeCCC-----eEEEEECCCCceEEEe--c-----CCCcEEEEEEcC--CCcEEEEEcC-----CCEEEEECCCCC
Confidence 7777777553 4778898876533211 1 112233344432 2334444432 258899988765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.85 E-value=2.2 Score=42.21 Aligned_cols=194 Identities=10% Similarity=0.086 Sum_probs=96.3
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEEC----CEEEEEeecCCCCCccCeEEEEECC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~----~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
.++++.|+... .-..+.+||..+......... .....-.+++... +.+++.|+.++ .+.+||..
T Consensus 31 ~~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~ 98 (357)
T 3i2n_A 31 AKFVTMGNFAR---GTGVIQLYEIQHGDLKLLREI---EKAKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLE 98 (357)
T ss_dssp SEEEEEEC--C---CCEEEEEEEECSSSEEEEEEE---EESSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTT
T ss_pred ceEEEecCccC---CCcEEEEEeCCCCcccceeee---cccCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCC
Confidence 36666765411 123688889888876544311 1111112222222 47777777654 37888887
Q ss_pred CCc--EEEeecCCCCCCCCcccEEEE-------ECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCc
Q 007111 133 SLT--WLPLHCTGTGPSPRSNHVAAL-------YDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRA 201 (617)
Q Consensus 133 t~~--W~~l~~~g~~P~~R~~h~a~~-------~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~ 201 (617)
+.. ...+. + ...+ -.++.. -++. +++.|+.++ .+..||+.+.. ...+.... ....+.
T Consensus 99 ~~~~~~~~~~--~-~~~~--v~~~~~~~~~~~s~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~-~~~~~~ 166 (357)
T 3i2n_A 99 APEMPVYSVK--G-HKEI--INAIDGIGGLGIGEGAP-EIVTGSRDG-----TVKVWDPRQKDDPVANMEPVQ-GENKRD 166 (357)
T ss_dssp SCSSCSEEEC--C-CSSC--EEEEEEESGGGCC-CCC-EEEEEETTS-----CEEEECTTSCSSCSEEECCCT-TSCCCC
T ss_pred CCCccEEEEE--e-cccc--eEEEeeccccccCCCcc-EEEEEeCCC-----eEEEEeCCCCCCcceeccccC-CCCCCc
Confidence 664 22221 1 1111 111111 2345 677777664 48999997764 33332210 011222
Q ss_pred ceEEEE-----ECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecC-CcEEEEEcCCCC
Q 007111 202 GCCGVL-----CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAFGGIKK 275 (617)
Q Consensus 202 ~ha~v~-----~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~-~~~L~I~GG~~~ 275 (617)
..+++. .++.+++.|+.. ..+.+||+.+..-...... ......+.+...+ .+..+++|+.++
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETNI-------KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEEC-------SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecCC-------CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 223331 366677777654 3588999988764333211 1223344443210 244566776543
Q ss_pred CCCCeEEEEECCCCc
Q 007111 276 EPSNQVEVLSIEKNE 290 (617)
Q Consensus 276 ~~~~dV~vyd~~~~~ 290 (617)
.|.+||+.+.+
T Consensus 235 ----~i~i~d~~~~~ 245 (357)
T 3i2n_A 235 ----KFHVFDMRTQH 245 (357)
T ss_dssp ----EEEEEEEEEEE
T ss_pred ----eEEEEeCcCCC
Confidence 67888876543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=6.6 Score=43.44 Aligned_cols=205 Identities=16% Similarity=0.129 Sum_probs=110.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEE-eeccCC-------CCCCcceeEEEEECCEEEEEeecCCCCCccCeEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEAKGD-------IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~-------~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
|.++|+..-. ...+.+||..+.+-.. +++.+. .|.+|.....+..++..+++-- .....++
T Consensus 255 Gk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~ 323 (567)
T 1qks_A 255 DKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKIL 323 (567)
T ss_dssp TTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEE
T ss_pred CCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEE
Confidence 4467776543 2468888987765333 332110 1233433333222333333321 1246789
Q ss_pred EEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecC-CCCCCCCcceEE
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCG 205 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~-g~~P~~R~~ha~ 205 (617)
+.|..+..+..+. .++.+++-|...+- +++++|+.... .+.|.++|..+++-...... +..|.|..+...
T Consensus 324 ~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 324 LVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp EEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred EEecCCCccceee---eeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 9998887765553 34455666655544 45556665433 35699999999876555455 555655434332
Q ss_pred EEE--CCEEEEEecCCCCCccceEEEEECCCC-----cEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCC--
Q 007111 206 VLC--GTKWYIAGGGSRKKRHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 276 (617)
Q Consensus 206 v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~-----~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~-- 276 (617)
.. ++.+|+.+-... ..+-++|..+. .|+.+...+... ..+..+-.+.+..++|+---.+.+
T Consensus 396 -~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 396 -VHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPALG-----GGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp -EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred -ECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEecCC-----CCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 23 356777653221 34778887763 277665433221 112223344555678874422211
Q ss_pred CCCeEEEEECCCC
Q 007111 277 PSNQVEVLSIEKN 289 (617)
Q Consensus 277 ~~~dV~vyd~~~~ 289 (617)
..+.|.+||+.+.
T Consensus 466 ~~~~v~v~d~~~~ 478 (567)
T 1qks_A 466 ISGSVAVFDIKAM 478 (567)
T ss_dssp HHTCEEEEEGGGC
T ss_pred cCceEEEEECCcc
Confidence 1458999998765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=92.78 E-value=1.1 Score=46.87 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCc----EEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEE
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSL 180 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~y 180 (617)
++.+++.|+.+ ..+.+||+.+.. -..+. .......++.+ ++..+++.|+.++ .|.+|
T Consensus 243 ~~~~l~s~~~d------g~i~i~d~~~~~~~~~~~~~~------~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vw 305 (430)
T 2xyi_A 243 HESLFGSVADD------QKLMIWDTRNNNTSKPSHTVD------AHTAEVNCLSFNPYSEFILATGSADK-----TVALW 305 (430)
T ss_dssp CTTEEEEEETT------SEEEEEETTCSCSSSCSEEEE------CCSSCEEEEEECSSCTTEEEEEETTS-----EEEEE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCCCCcceeEee------cCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEE
Confidence 45677777654 358899998652 11111 00111122333 2434788888764 48999
Q ss_pred ECCCCc--EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCC
Q 007111 181 DFETMI--WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 181 D~~t~~--W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
|+.+.. -..+.. ....-.++... +..+++.||..+ .+.+||+..
T Consensus 306 d~~~~~~~~~~~~~-----h~~~v~~i~~sp~~~~~l~s~~~d~-----~i~iwd~~~ 353 (430)
T 2xyi_A 306 DLRNLKLKLHSFES-----HKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSK 353 (430)
T ss_dssp ETTCTTSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS-----CCEEEEGGG
T ss_pred eCCCCCCCeEEeec-----CCCCEEEEEECCCCCCEEEEEeCCC-----cEEEEeCCC
Confidence 987632 111111 11111223332 335777777553 367788765
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.44 Score=46.27 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhh
Q 007111 559 VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSL 604 (617)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (617)
+.-+..-+.+.+.++...+.-+..-+.+.=.+++++.++..+|.+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 239 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3333444444444444444444333444444556666666666554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.71 E-value=15 Score=41.55 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=61.7
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|..+++ |..-......... .........+.+..+++||+.+.. ..++.+|..|.+ |+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~v~v~~~d-------g~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAG---EACCDAVNRGVAVWKGKVYVGVLD-------GRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccc---cccccCCCCccEEECCEEEEEccC-------CEEEEEECCCCCEeeeecC
Confidence 469999987665 9764321000000 000000112345578888876421 369999998875 87654
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
............+-++.++.+|+-.+.... .....++.||+.+.+ |+.-
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEec
Confidence 200101111222334568888774332211 134679999999876 8864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.66 E-value=8.9 Score=40.06 Aligned_cols=160 Identities=9% Similarity=0.007 Sum_probs=81.1
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcE
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 136 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W 136 (617)
+++++.|+.+ ..+.+||+.+......-..+ ........+.. ++.+++.||.+ ..+.+||..+.+.
T Consensus 210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred CcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence 7788888763 25788887766533221111 11111222222 67777777743 3589999988764
Q ss_pred EEeecCCC----C-----------------CCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEEC--CC-CcEEEee
Q 007111 137 LPLHCTGT----G-----------------PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF--ET-MIWTRIK 191 (617)
Q Consensus 137 ~~l~~~g~----~-----------------P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~--~t-~~W~~~~ 191 (617)
...-..+. + +....-..++.. ++.++++.++.+ +.|.+||+ .+ ..+..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCceeecc
Confidence 43211000 0 011111122222 355344443233 35888888 33 4455544
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCC----CccceEEEEECCCCcEEE
Q 007111 192 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRK----KRHAETLIFDILKGEWSV 239 (617)
Q Consensus 192 ~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~----~~~~~v~~yDl~~~~W~~ 239 (617)
.. +....-.+++...+.+++..+.... ...-.+|.++..++.|..
T Consensus 350 ~~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 350 II---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp EE---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred Ee---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 32 1122223445556777777654321 223467888888888863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.40 E-value=9.7 Score=38.03 Aligned_cols=190 Identities=9% Similarity=0.005 Sum_probs=95.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEE-EeeccCCCCCCcce--eEEEEECCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~P~~R~~--~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++.+++.||.+. .+.+||..+..-. .+. .+..-..... ...+..++.+.++. ....+..||..
T Consensus 47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~~~s~s~D~~i~~w~-------~~~~~~~~~~~ 112 (343)
T 3lrv_A 47 DKWVCMCRCEDG------ALHFTQLKDSKTITTIT-TPNPRTGGEHPAIISRGPCNRLLLLY-------PGNQITILDSK 112 (343)
T ss_dssp EEEEEEEEEETT------EEEEEEESSSSCEEEEE-EECCCTTCCCCSEEEECSTTEEEEEE-------TTTEEEEEETT
T ss_pred CCCEEEEECCCC------cEEEEECCCCcEEEEEe-cCCceeeeeCCceEEecCCCeEEEEE-------ccCceEEeecC
Confidence 566777777642 5777787765421 111 1111110000 12222244555542 22456778887
Q ss_pred CCc-EEEeecCCCCCCCCcccEEEEE---CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 007111 133 SLT-WLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 133 t~~-W~~l~~~g~~P~~R~~h~a~~~---~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~ 208 (617)
+.. ..... .+....-.+++.. ++. +++.|+.++. +..||+.++........ .......+++..
T Consensus 113 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~-----i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~ 179 (343)
T 3lrv_A 113 TNKVLREIE----VDSANEIIYMYGHNEVNTE-YFIWADNRGT-----IGFQSYEDDSQYIVHSA---KSDVEYSSGVLH 179 (343)
T ss_dssp TCCEEEEEE----CCCSSCEEEEECCC---CC-EEEEEETTCC-----EEEEESSSSCEEEEECC---CSSCCCCEEEEC
T ss_pred CcceeEEee----cCCCCCEEEEEcCCCCCCC-EEEEEeCCCc-----EEEEECCCCcEEEEEec---CCCCceEEEEEC
Confidence 776 33332 1111111122222 344 7777887654 99999988877544322 111112333433
Q ss_pred -CCEEEEEecCCCCCccceEEEEECCCCcEE--EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDILKGEWS--VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~--~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
++.+++.|+..+ .+.+||+.+..-. .+. . ........+.+.. ++.+++.|+. + .|.+||
T Consensus 180 pdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~---~---~h~~~v~~l~fs~--~g~~l~s~~~-~----~v~iwd 241 (343)
T 3lrv_A 180 KDSLLLALYSPDG-----ILDVYNLSSPDQASSRFP---V---DEEAKIKEVKFAD--NGYWMVVECD-Q----TVVCFD 241 (343)
T ss_dssp TTSCEEEEECTTS-----CEEEEESSCTTSCCEECC---C---CTTSCEEEEEECT--TSSEEEEEES-S----BEEEEE
T ss_pred CCCCEEEEEcCCC-----EEEEEECCCCCCCccEEe---c---cCCCCEEEEEEeC--CCCEEEEEeC-C----eEEEEE
Confidence 667777777553 4889999876532 221 1 0112333444432 3445666663 2 789999
Q ss_pred CCCCc
Q 007111 286 IEKNE 290 (617)
Q Consensus 286 ~~~~~ 290 (617)
+.+.+
T Consensus 242 ~~~~~ 246 (343)
T 3lrv_A 242 LRKDV 246 (343)
T ss_dssp TTSST
T ss_pred cCCCC
Confidence 98765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.35 E-value=8.4 Score=37.22 Aligned_cols=224 Identities=15% Similarity=0.092 Sum_probs=104.8
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
+.|.++|+.+++....-. ...+...-.+++.. +++.++.|+.+ ..+.++|..+.+-.....
T Consensus 45 ~tV~iWd~~tg~~~~~~~----------~~~~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~~-- 106 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQ----------MEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNMT-- 106 (318)
T ss_dssp TEEEEEETTTCCEEEEEE----------CCSTTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE--
T ss_pred CEEEEEECCCCCEEEEEE----------ecCCCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeEEEec--
Confidence 368999999887655432 11111111223222 56777778763 268888998886433321
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~ 171 (617)
.... ...+....+.+++.|+.+. .+..++..+.........+. ... ....... .+. +++.|+.++.
T Consensus 107 -~h~~--~~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~-~l~s~~~d~~ 173 (318)
T 4ggc_A 107 -SHSA--RVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH--SQE-VCGLRWAPDGR-HLASGGNDNL 173 (318)
T ss_dssp -CCSS--CEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC--SSC-EEEEEECTTSS-EEEEEETTSC
T ss_pred -Cccc--eEEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcCc--cCc-eEEEEEcCCCC-EEEEEecCcc
Confidence 1111 1223334455666665433 34555555443322111111 111 1122222 445 6677776643
Q ss_pred CCCCeEEEEECCCCcEE--EeecCCCCCCCCcceEEEEE--CC-EEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC
Q 007111 172 KTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLC--GT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 246 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W~--~~~~~g~~P~~R~~ha~v~~--~~-~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~ 246 (617)
+.+||..++.-. ...... .....-.+.+.. +. .+++.+|... ..+.++|............
T Consensus 174 -----i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~i~lwd~~~~~~~~~~~~--- 239 (318)
T 4ggc_A 174 -----VNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA--- 239 (318)
T ss_dssp -----EEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTT----CEEEEEETTTCCEEEEEEC---
T ss_pred -----eeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCC----CEEEEEecccccccccccc---
Confidence 888998764311 111110 011111222222 33 3444444332 3467788877654443311
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
........+. .....+++.+|.. -..|.+||+.+.+
T Consensus 240 ----~~~v~~~~~~-~~~~~~~~~sg~~---d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 240 ----HSQVCSILWS-PHYKELISGHGFA---QNQLVIWKYPTMA 275 (318)
T ss_dssp ----SSCEEEEEEE-TTTTEEEEEECTT---TCCEEEEETTTCC
T ss_pred ----eeeeeeeeec-ccccceEEEEEcC---CCEEEEEECCCCc
Confidence 1112223333 2345566555542 2368899987654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=92.28 E-value=4.3 Score=45.60 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=120.5
Q ss_pred cceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 13 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 13 ~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
...+++.+.....|..+......... ..........+-+++.++|+-.. .+.....++++|+.++.... . .
T Consensus 93 ~~~l~~~~~~~~~~~~l~d~~~~a~~-----~~~~~~~~~~SPDG~~la~~~~~-~G~~~~~i~v~dl~tg~~~~-~--~ 163 (695)
T 2bkl_A 93 KAILYWRQGESGQEKVLLDPNGWSKD-----GTVSLGTWAVSWDGKKVAFAQKP-NAADEAVLHVIDVDSGEWSK-V--D 163 (695)
T ss_dssp SCEEEEEESTTSCCEEEECGGGSSSS-----SCEEEEEEEECTTSSEEEEEEEE-TTCSCCEEEEEETTTCCBCS-S--C
T ss_pred EEEEEEEcCCCCCcEEEEchHHhccC-----CCEEEEEEEECCCCCEEEEEECC-CCCceEEEEEEECCCCCCcC-C--c
Confidence 45678888777777766431110000 00111111222256655554331 22233589999999987631 1 1
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCC-------CccCeEEEEECCCCcE--EEeecCCCCCC-CCcccEEEEE-CCcE
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKR-------RKLNDLHMFDLKSLTW--LPLHCTGTGPS-PRSNHVAALY-DDKN 161 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~-------~~~~~v~~yD~~t~~W--~~l~~~g~~P~-~R~~h~a~~~-~~~~ 161 (617)
.++.......+-.-+++.++++..+..+ .....++++++.+..- ..+. ..+. +......... ++++
T Consensus 164 ~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~ 240 (695)
T 2bkl_A 164 VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKY 240 (695)
T ss_dssp CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCC
T ss_pred ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCE
Confidence 1222221211222255556665554321 1356799999987763 2221 1111 1222223332 4554
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc---EE
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WS 238 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~---W~ 238 (617)
|++...... ..+++|.+|..+..|..+... .... ...+..++.+|+.... ......++.+|+.+.. |.
T Consensus 241 l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~---~~~~--~~~~~~~g~l~~~s~~--~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 241 LFVYILRGW--SENDVYWKRPGEKDFRLLVKG---VGAK--YEVHAWKDRFYVLTDE--GAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp EEEEEEETT--TEEEEEEECTTCSSCEEEEEC---SSCC--EEEEEETTEEEEEECT--TCTTCEEEEEBTTBCSGGGCE
T ss_pred EEEEEeCCC--CceEEEEEcCCCCceEEeecC---CCce--EEEEecCCcEEEEECC--CCCCCEEEEEeCCCCCccCCe
Confidence 444333221 345789998877888887653 1111 2222245556665432 2223679999987654 88
Q ss_pred EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 239 VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 239 ~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+.... .......+.+. ++.+++.+..++ ...++++++..
T Consensus 312 ~l~~~~-----~~~~l~~~~~~---~~~lv~~~~~dg--~~~l~~~~~~g 351 (695)
T 2bkl_A 312 EIVPED-----SSASLLSVSIV---GGHLSLEYLKDA--TSEVRVATLKG 351 (695)
T ss_dssp EEECCC-----SSCEEEEEEEE---TTEEEEEEEETT--EEEEEEEETTC
T ss_pred EEecCC-----CCCeEEEEEEE---CCEEEEEEEECC--EEEEEEEeCCC
Confidence 765211 11112222332 366776665443 34788888754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.27 E-value=8.9 Score=37.32 Aligned_cols=191 Identities=13% Similarity=0.084 Sum_probs=97.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+|+++... ..+++||+.+. ...+.. +. ....+++.. ++.+|+.... ...+++||+.+.
T Consensus 39 g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~----~~-~~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH----PS-HHQNGHCLNKQGHLIACSHG------LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGG------TEEEEEETTSC-EEEEES----SC-SSEEEEEECTTCCEEEEETT------TTEEEEECSTTC
T ss_pred CCEEEEEeCCC------CEEEEEECCCC-eEEEEC----CC-CCcceeeECCCCcEEEEecC------CCeEEEEcCCCC
Confidence 34588887542 36999999988 666652 22 122334332 5677765421 246999999888
Q ss_pred cEEEeecC-CCCCCCCcccEEEEE-CCcEEEEE----ccCC--------CCCCCCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 135 TWLPLHCT-GTGPSPRSNHVAALY-DDKNLLIF----GGSS--------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 200 (617)
Q Consensus 135 ~W~~l~~~-g~~P~~R~~h~a~~~-~~~~LyV~----GG~~--------~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R 200 (617)
+...+... ...+..+.. .+++. +++ +|+. |... .......+++||+. +....+... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-----~~ 172 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPN-DVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-----RV 172 (296)
T ss_dssp CEEEEECEETTEECCCCC-CEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC-----CS
T ss_pred cEEEEeeccCCCCCCCCC-CEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC-----CC
Confidence 87766311 011111111 23333 455 8876 4321 01113479999987 666554331 11
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC
Q 007111 201 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 277 (617)
Q Consensus 201 ~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~ 277 (617)
.-.+++.. ++++++.+... ..+++||+. .... ......... .. ....+.+. .++.||+..+
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~--~~--~p~~i~~d--~~G~l~v~~~----- 236 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHFTVE--PG--KTDGLRVD--AGGLIWASAG----- 236 (296)
T ss_dssp SEEEEEECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEECCS--SS--CCCSEEEB--TTSCEEEEET-----
T ss_pred CCccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCC--CC--CCCeEEEC--CCCCEEEEcC-----
Confidence 11233333 55555544322 468899986 4455 211111100 00 01112333 2356777662
Q ss_pred CCeEEEEECCCC
Q 007111 278 SNQVEVLSIEKN 289 (617)
Q Consensus 278 ~~dV~vyd~~~~ 289 (617)
+.|.+||+...
T Consensus 237 -~~v~~~~~~g~ 247 (296)
T 3e5z_A 237 -DGVHVLTPDGD 247 (296)
T ss_dssp -TEEEEECTTSC
T ss_pred -CeEEEECCCCC
Confidence 36899998743
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=92.11 E-value=12 Score=38.33 Aligned_cols=66 Identities=15% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCEEEEEecCCC-----CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 209 GTKWYIAGGGSR-----KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 209 ~~~IyI~GG~s~-----~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
++++|+....+. ......++++|+.+.+-..- .+. .. .++ +.+..++ ..||+.++ +.|.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~--i~~----~~-p~~-ia~spdg-~~l~v~n~------~~v~v 329 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR--IPG----RD-ALS-MTIDQQR-NLMLTLDG------GNVNV 329 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE--EEC----TT-CCE-EEEETTT-TEEEEECS------SCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE--Eec----CC-eeE-EEECCCC-CEEEEeCC------CeEEE
Confidence 578998754111 11246899999988753321 111 22 233 3444333 47776653 58999
Q ss_pred EECCCC
Q 007111 284 LSIEKN 289 (617)
Q Consensus 284 yd~~~~ 289 (617)
||..+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 999886
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=92.04 E-value=5.3 Score=45.33 Aligned_cols=207 Identities=6% Similarity=-0.051 Sum_probs=101.2
Q ss_pred EEEEEECCCCcEEEeeccCCCC--CCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCC------CcEE---Eeec
Q 007111 74 SVWTFDTETECWSVVEAKGDIP--VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS------LTWL---PLHC 141 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P--~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t------~~W~---~l~~ 141 (617)
.+++||+.++++.......... ....-++++.. ++.||+ |... .-+++||+.+ ..+. ....
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCL------GGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESS------SCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECC------CceEEEccccccccCCcceeccccccc
Confidence 5999999999988765321111 11122233333 367877 3221 2378888653 1232 1111
Q ss_pred CCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC
Q 007111 142 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR 220 (617)
Q Consensus 142 ~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~ 220 (617)
...++... -.+.+.-.+..|+|+||... .+++||+.++++..+...+ .+......+++.. ++.||+.. . .
T Consensus 466 ~~~l~~~~-i~~i~~d~~g~lWi~~~t~~-----Gl~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~lWigt-~-~ 536 (758)
T 3ott_A 466 HNGLSGMF-INQIIPDNEGNVWVLLYNNK-----GIDKINPRTREVTKLFADE-LTGEKSPNYLLCDEDGLLWVGF-H-G 536 (758)
T ss_dssp GGTCSCSC-EEEEEECTTSCEEEEETTCS-----SEEEEETTTTEEEEECTTT-SCGGGCEEEEEECTTSCEEEEE-T-T
T ss_pred ccccccce-eeeEEEcCCCCEEEEccCCC-----CcEEEeCCCCceEEecCCC-cCCCcccceEEECCCCCEEEEe-c-C
Confidence 11222211 11222222334888766543 3999999999998874321 1111111223332 57788643 2 1
Q ss_pred CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc------c
Q 007111 221 KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM------G 294 (617)
Q Consensus 221 ~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~------~ 294 (617)
-+.+||+.+..+..... .......-++ + +. +++.|++.... -+.+||+.+.+... .
T Consensus 537 -----Gl~~~~~~~~~~~~~~~---~gl~~~~i~~-i-~~--~~g~lWi~t~~------Gl~~~~~~~~~~~~~~~~~~~ 598 (758)
T 3ott_A 537 -----GVMRINPKDESQQSISF---GSFSNNEILS-M-TC--VKNSIWVSTTN------GLWIIDRKTMDARQQNMTNKR 598 (758)
T ss_dssp -----EEEEECC--CCCCBCCC---CC---CCEEE-E-EE--ETTEEEEEESS------CEEEEETTTCCEEEC--CCCC
T ss_pred -----ceEEEecCCCceEEecc---cCCCccceEE-E-EE--CCCCEEEECCC------CeEEEcCCCceeEEecCCCCc
Confidence 28899998877665421 1111122222 2 22 24678765532 47888887665321 1
Q ss_pred cccccCccCCceeeeccCCC
Q 007111 295 RRSTPNAKGPGQLLFEKRSS 314 (617)
Q Consensus 295 w~~~~~~~~~~v~vfGG~~~ 314 (617)
...+.....+..++|||..+
T Consensus 599 ~~~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 599 FTSLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp CSEEEEETTTTEEEEECBSE
T ss_pred eeeeEEECCCCcEEEecCCc
Confidence 11122212466788998744
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.84 E-value=11 Score=37.54 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=75.6
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCc-EEEeeccCCCCCCcceeEEEE-E--CCEEEEEeecCCCCCccCeEEEEE
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGHTVVR-A--SSVLILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~g~~P~~R~~~s~~~-~--~~~IYv~GG~~~~~~~~~~v~~yD 130 (617)
.++.|.++-.. ..+..||..+.. ...... +....-.+++. - ++.+++.|+.++ .+.+||
T Consensus 93 ~D~~i~~w~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~dg------~i~~wd 155 (343)
T 3lrv_A 93 PCNRLLLLYPG-------NQITILDSKTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNRG------TIGFQS 155 (343)
T ss_dssp STTEEEEEETT-------TEEEEEETTTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETTC------CEEEEE
T ss_pred CCCeEEEEEcc-------CceEEeecCCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCCC------cEEEEE
Confidence 35566666432 256677877776 333321 11111111111 1 456777777654 388999
Q ss_pred CCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEE--EeecCCCCCCCCcceEEEEE
Q 007111 131 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLC 208 (617)
Q Consensus 131 ~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~--~~~~~g~~P~~R~~ha~v~~ 208 (617)
+.+..-.... .......-.+++...+..+++.|+.++ .|..||+.++... .+.. .....-.+++..
T Consensus 156 ~~~~~~~~~~---~~~~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~~----~h~~~v~~l~fs 223 (343)
T 3lrv_A 156 YEDDSQYIVH---SAKSDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPDQASSRFPV----DEEAKIKEVKFA 223 (343)
T ss_dssp SSSSCEEEEE---CCCSSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTTSCCEECCC----CTTSCEEEEEEC
T ss_pred CCCCcEEEEE---ecCCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCCCCccEEec----cCCCCEEEEEEe
Confidence 9888765432 111111122344444443777788765 4999999877543 2211 011112233333
Q ss_pred -CCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 209 -GTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 209 -~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
++..++.|+ .+ .+.+||+.+..
T Consensus 224 ~~g~~l~s~~-~~-----~v~iwd~~~~~ 246 (343)
T 3lrv_A 224 DNGYWMVVEC-DQ-----TVVCFDLRKDV 246 (343)
T ss_dssp TTSSEEEEEE-SS-----BEEEEETTSST
T ss_pred CCCCEEEEEe-CC-----eEEEEEcCCCC
Confidence 556666666 22 58899987653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=91.75 E-value=13 Score=37.95 Aligned_cols=184 Identities=11% Similarity=0.154 Sum_probs=91.5
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcce-eEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCC--cEEEeecCCCCCC
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSG-HTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPS 147 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~ 147 (617)
.+..||+.+..-...-.. ..+..... .....+ ++.+++.||.++. +.+||+... .-..+. +. .
T Consensus 181 ~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~------v~~wd~~~~~~~~~~~~--~h--~ 249 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDTT------VRLWDLRITSRAVRTYH--GH--E 249 (380)
T ss_dssp CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTSC------EEEEETTTTCCCCEEEC--CC--S
T ss_pred cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCCe------EEEEECCCCCcceEEEC--Cc--C
Confidence 478888888764432210 12222111 122222 5678888887653 788888632 122221 10 0
Q ss_pred CCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCC--CCC-cceEEEEE-CCEEEEEecCCCCC
Q 007111 148 PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP--SPR-AGCCGVLC-GTKWYIAGGGSRKK 222 (617)
Q Consensus 148 ~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P--~~R-~~ha~v~~-~~~IyI~GG~s~~~ 222 (617)
.. -.+++.. ++. .++.|+.++. +..||+.++.-.......... ... .-.+++.. ++.+++.|+..+
T Consensus 250 ~~-v~~v~~~p~~~-~l~s~s~D~~-----i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-- 320 (380)
T 3iz6_a 250 GD-INSVKFFPDGQ-RFGTGSDDGT-----CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG-- 320 (380)
T ss_dssp SC-CCEEEECTTSS-EEEEECSSSC-----EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS--
T ss_pred CC-eEEEEEecCCC-eEEEEcCCCe-----EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC--
Confidence 11 1133333 345 7788887754 899999887655443211000 000 11233332 667777776543
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 223 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 223 ~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+++||........... ...........++.+.. ++.+++.||.++ .|.+|++..
T Consensus 321 ---~i~vwd~~~~~~~~~~~--~~~~~h~~~v~~l~~s~--dg~~l~sgs~D~----~i~iW~~~~ 375 (380)
T 3iz6_a 321 ---DCYVWDTLLAEMVLNLG--TLQNSHEGRISCLGLSS--DGSALCTGSWDK----NLKIWAFSG 375 (380)
T ss_dssp ---CEEEEETTTCCEEEEEC--CSCSSCCCCCCEEEECS--SSSEEEEECTTS----CEEEEECCS
T ss_pred ---CEEEEECCCCceEEEEe--cccCCCCCceEEEEECC--CCCEEEEeeCCC----CEEEEecCC
Confidence 48899987765433211 00000111223334432 345778888765 467777654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=91.66 E-value=13 Score=38.00 Aligned_cols=151 Identities=14% Similarity=0.186 Sum_probs=78.9
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++.+++.|+.++ .+.+||+.+.+-...- .+. ...-.+++.. ++. .++.|+.++ .+..||+.++
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~-~~h---~~~v~~~~~~p~~~-~l~s~s~d~-----~v~iwd~~~~ 197 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMIL-QGH---EQDIYSLDYFPSGD-KLVSGSGDR-----TVRIWDLRTG 197 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-CCC---SSCEEEEEECTTSS-EEEEEETTS-----EEEEEETTTT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEE-ccC---CCCEEEEEEcCCCC-EEEEecCCC-----cEEEEECCCC
Confidence 467777777644 4889999887654331 111 1111233333 345 667777663 4899999888
Q ss_pred cEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC-CCCCcceEEEEEeec
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS-VTSNKGFTLVLVQHK 262 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~-p~~r~~~s~v~v~~~ 262 (617)
........ .. ...+++.. ++.+++.|+..+ .+.+||+.+............. .........+.+..
T Consensus 198 ~~~~~~~~---~~--~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~- 266 (393)
T 1erj_A 198 QCSLTLSI---ED--GVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR- 266 (393)
T ss_dssp EEEEEEEC---SS--CEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-
T ss_pred eeEEEEEc---CC--CcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-
Confidence 76544332 11 11223332 567777777653 3788998876543322111110 01112233344432
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 263 EKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 263 ~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
++.+++.|+.++ .|.+||+.+.
T Consensus 267 -~g~~l~s~s~d~----~v~~wd~~~~ 288 (393)
T 1erj_A 267 -DGQSVVSGSLDR----SVKLWNLQNA 288 (393)
T ss_dssp -TSSEEEEEETTS----EEEEEEC---
T ss_pred -CCCEEEEEeCCC----EEEEEECCCC
Confidence 344667787654 6888888654
|
| >1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
Probab=91.65 E-value=1 Score=36.61 Aligned_cols=71 Identities=21% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhh
Q 007111 471 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 541 (617)
Q Consensus 471 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~ 541 (617)
.++||+++-........+++.+.+.++++|+....+-.....|.+|+..+..+++...|+|..+...-|++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888887777777777788888877777777777766655444443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.65 E-value=10 Score=36.63 Aligned_cols=220 Identities=12% Similarity=0.074 Sum_probs=100.1
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.+.+||..+.+-...-. ... . ........+.+++.|+.. ..+..++..+.........+
T Consensus 90 ~v~iw~~~~~~~~~~~~----------~h~-~--~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~-- 148 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNMT----------SHS-A--RVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-- 148 (318)
T ss_dssp EEEEEETTTTEEEEEEE----------CCS-S--CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC--
T ss_pred cEEEeecCCceeEEEec----------Ccc-c--eEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEcC--
Confidence 57888888776433221 000 1 122333445555555542 23555555554432222111
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEE--EeecCCCCCCCCcccEEEEE--CCcEEEEEccCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL--PLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSK 170 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~--~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~ 170 (617)
.............+.+++.|+.++ .+.+||..+.+-. ..........+ -...+.. +...+++.+|...
T Consensus 149 ~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 149 HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCBTTBSCCSEEECCCCSC--EEEEEECTTSTTEEEEEECTTT
T ss_pred ccCceEEEEEcCCCCEEEEEecCc------ceeEEECCCCcccccceeeecccCCc--eEEEEecCCCCcEEEEEecCCC
Confidence 111111122223456666666544 3778888764311 11000011111 1112222 3343444444432
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 171 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
..+..+|..+......... ... ...++.. ++.+++.+|..+ ..+.+||+.+.+-...- ..
T Consensus 221 ----~~i~lwd~~~~~~~~~~~~---~~~--v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~~~~~l--~g--- 282 (318)
T 4ggc_A 221 ----RHIRIWNVCSGACLSAVDA---HSQ--VCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAKVAEL--KG--- 282 (318)
T ss_dssp ----CEEEEEETTTCCEEEEEEC---SSC--EEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCEEEEE--CC---
T ss_pred ----CEEEEEecccccccccccc---eee--eeeeeecccccceEEEEEcCC----CEEEEEECCCCcEEEEE--cC---
Confidence 3578889877766554432 111 1222222 556666656443 34889998876533221 11
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
-......+.+.. ++.+++.||.++ .|.++|+..
T Consensus 283 -H~~~V~~l~~sp--dg~~l~S~s~D~----~v~iWd~~~ 315 (318)
T 4ggc_A 283 -HTSRVLSLTMSP--DGATVASAAADE----TLRLWRCFE 315 (318)
T ss_dssp -CSSCEEEEEECT--TSSCEEEEETTT----EEEEECCSC
T ss_pred -CCCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCC
Confidence 111233344432 244677788764 567777643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=91.61 E-value=4.1 Score=39.80 Aligned_cols=186 Identities=11% Similarity=0.029 Sum_probs=88.5
Q ss_pred eEEEEECCCCcEEEc-cccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccC---------CCCCCceEEEEEECCCC
Q 007111 15 DVQVLNFDRFSWTAA-SSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKT---------DSGSDRVSVWTFDTETE 83 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l-~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~---------~~~~~~~~v~~yd~~t~ 83 (617)
.+++||+. .+...+ .... ...+...-++++.. ++++|+..... ........+++||+. .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDS--------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEEEEETT-SCEEECCSBCT--------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred CEEEEeCC-CCEEEEEeccC--------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 58888888 666655 3210 01111112344443 56788765431 011123579999987 6
Q ss_pred cEEEeeccCCCCCCcceeEEEEE-----CC-EEEEEeecCCCCCccCeEEEEECC-CCcEEEeecCCCCCCC--CcccEE
Q 007111 84 CWSVVEAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTGPSP--RSNHVA 154 (617)
Q Consensus 84 ~W~~~~~~g~~P~~R~~~s~~~~-----~~-~IYv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~--R~~h~a 154 (617)
+...+... .. ....++.. ++ .+|+.... .+.+++||+. +.++........++.. ..-..+
T Consensus 163 ~~~~~~~~--~~---~~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i 231 (314)
T 1pjx_A 163 QMIQVDTA--FQ---FPNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp CEEEEEEE--ES---SEEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred CEEEeccC--CC---CcceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence 55544311 11 12233333 23 56665422 2568999876 4444322111112211 111223
Q ss_pred EEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEEC
Q 007111 155 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 155 ~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl 232 (617)
+.-.+..+|+..... +.|.+||+.++........ +. ..-.+++.. ++ .+|+.+... ..+++|++
T Consensus 232 ~~d~~G~l~v~~~~~-----~~i~~~d~~~g~~~~~~~~---~~-~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~ 297 (314)
T 1pjx_A 232 DFDEDNNLLVANWGS-----SHIEVFGPDGGQPKMRIRC---PF-EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEW 297 (314)
T ss_dssp EEBTTCCEEEEEETT-----TEEEEECTTCBSCSEEEEC---SS-SCEEEEEECTTSSEEEEEETTT-----TEEEEEEC
T ss_pred EECCCCCEEEEEcCC-----CEEEEEcCCCCcEeEEEeC---CC-CCceeEEECCCCCEEEEEeCCC-----CeEEEEeC
Confidence 333333377764322 3599999985543222221 21 122233332 34 477775433 35889988
Q ss_pred CCC
Q 007111 233 LKG 235 (617)
Q Consensus 233 ~~~ 235 (617)
...
T Consensus 298 ~~~ 300 (314)
T 1pjx_A 298 QRN 300 (314)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=91.48 E-value=13 Score=39.71 Aligned_cols=174 Identities=8% Similarity=0.025 Sum_probs=83.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+++.++.|+.+ ..+.+||.....-..+. . ...........-++.+++.|+.+. .+.+||.....
T Consensus 396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~---~-~~~~v~~~~~s~d~~~l~~~~~d~------~v~~w~~~~~~ 459 (577)
T 2ymu_A 396 DGQTIASASDD------KTVKLWNRNGQLLQTLT---G-HSSSVWGVAFSPDDQTIASASDDK------TVKLWNRNGQL 459 (577)
T ss_dssp TSSCEEEEETT------SEEEEECTTCCEEEEEE---C-CSSCEEEEEECTTSSEEEEEETTS------EEEEEETTSCE
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCEEEEec---C-CCCCeEEEEECCCCCEEEEEcCCC------EEEEEECCCCE
Confidence 45666666652 25777886544433333 1 111111111122566677776543 47888876555
Q ss_pred EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
-..+. +. . ..-.+++.. +++ +++.|+.++ .|..||.....-..+... ... -.+++.. +++++
T Consensus 460 ~~~~~--~~--~-~~v~~~~~spd~~-~las~~~d~-----~i~iw~~~~~~~~~~~~h----~~~-v~~l~~s~dg~~l 523 (577)
T 2ymu_A 460 LQTLT--GH--S-SSVRGVAFSPDGQ-TIASASDDK-----TVKLWNRNGQLLQTLTGH----SSS-VRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEE--CC--S-SCEEEEEECTTSC-EEEEEETTS-----EEEEEETTSCEEEEEECC----SSC-EEEEEECTTSSCE
T ss_pred EEEEc--CC--C-CCEEEEEEcCCCC-EEEEEeCCC-----EEEEEcCCCCEEEEEeCC----CCC-EEEEEEcCCCCEE
Confidence 44442 11 1 111123333 445 677777653 488888654433333221 111 1223332 56666
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 275 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~ 275 (617)
+.||..+ .+.+||........+... ......+.+..+ +..++.||.++
T Consensus 524 ~s~~~dg-----~v~lwd~~~~~~~~~~~h-------~~~v~~~~fs~d--g~~l~s~~~D~ 571 (577)
T 2ymu_A 524 ASASDDK-----TVKLWNRNGQLLQTLTGH-------SSSVWGVAFSPD--GQTIASASSDK 571 (577)
T ss_dssp EEEETTS-----EEEEECTTSCEEEEEECC-------SSCEEEEEECTT--SSCEEEEETTS
T ss_pred EEEECcC-----EEEEEeCCCCEEEEEcCC-------CCCEEEEEEcCC--CCEEEEEeCCC
Confidence 6776542 477888655444443211 112333444432 33556677654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=91.36 E-value=1.9 Score=45.18 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=70.8
Q ss_pred EEEEeecCCCCCccCeEEEEECCCC---cEEEeecCCCC-CCCCcccEEEEEC-CcEEEEEccCCCCCCCCeEEEEECCC
Q 007111 110 LILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTG-PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFET 184 (617)
Q Consensus 110 IYv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~-P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v~~yD~~t 184 (617)
+++.|+.++ .+.+||+.+. .+... ....+ .....-+.++... +..+++.|+.++ .|.+||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-----~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVID-AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-----KLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEE-CSEEECCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceec-cceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 677776544 4888998772 22210 00011 1111122233332 333777777653 499999976
Q ss_pred Cc----EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCc--EEEeecCCCCCCCCCcceEE
Q 007111 185 MI----WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTL 256 (617)
Q Consensus 185 ~~----W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~--W~~l~~~~~~~p~~r~~~s~ 256 (617)
.. ...+.. ....-.+++.. +..+++.|+..+ .+.+||+.... -..+. ........
T Consensus 264 ~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~-------~h~~~v~~ 326 (430)
T 2xyi_A 264 NNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFE-------SHKDEIFQ 326 (430)
T ss_dssp SCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEE-------CCSSCEEE
T ss_pred CCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEee-------cCCCCEEE
Confidence 52 111111 11111223332 334788887653 48899987632 11111 01122333
Q ss_pred EEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 257 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 257 v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.+... ...+++.||.++ .|.+||+..
T Consensus 327 i~~sp~-~~~~l~s~~~d~----~i~iwd~~~ 353 (430)
T 2xyi_A 327 VQWSPH-NETILASSGTDR----RLHVWDLSK 353 (430)
T ss_dssp EEECSS-CTTEEEEEETTS----CCEEEEGGG
T ss_pred EEECCC-CCCEEEEEeCCC----cEEEEeCCC
Confidence 444322 345777777654 578888865
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=91.36 E-value=13 Score=37.42 Aligned_cols=216 Identities=11% Similarity=0.084 Sum_probs=109.0
Q ss_pred CCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeE
Q 007111 23 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT 102 (617)
Q Consensus 23 t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s 102 (617)
..+|..+... .+.+.....++...++.+|+.|.. ..+++-.-.-.+|+.+.....+|.. .+.
T Consensus 65 G~tW~~~~~~---------~~~~~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~ 126 (327)
T 2xbg_A 65 GQTWEPRTLV---------LDHSDYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRL 126 (327)
T ss_dssp TSSCEECCCC---------CSCCCCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEE
T ss_pred CCCCeECCCC---------CCCCCccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEE
Confidence 4579887641 111222234455557788887532 1455544345789998742222222 223
Q ss_pred EE-EECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEE
Q 007111 103 VV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 103 ~~-~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD 181 (617)
++ .-++.+|+.|.. ..+++-+-.-.+|+.+.. +.+..-+.++...+..+|++|.. + .+++-+
T Consensus 127 i~~~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-G-----~~~~S~ 189 (327)
T 2xbg_A 127 IKALGNGSAEMITNV-------GAIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-G-----SFYSTW 189 (327)
T ss_dssp EEEEETTEEEEEETT-------CCEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-S-----SEEEEE
T ss_pred EEEECCCCEEEEeCC-------ccEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-C-----cEEEEe
Confidence 33 346788887641 124444334568999852 22223344444444436666532 2 255554
Q ss_pred CC-CCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcEEEeecCCCCCCCCCcceEEEE
Q 007111 182 FE-TMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVL 258 (617)
Q Consensus 182 ~~-t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~~~~~~~p~~r~~~s~v~ 258 (617)
-. ...|+.+.. +.+...+.++.. ++.+|+++.. ..+++.+.+ ..+|+.+..+. .+ ...++..+.
T Consensus 190 d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~--~~-~~~~~~~v~ 256 (327)
T 2xbg_A 190 EPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSPL--RR-NSVGFLDLA 256 (327)
T ss_dssp CTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBCTT--SS-CCSCEEEEE
T ss_pred CCCCCceeECCC----CCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCCc--cc-CCcceEEEE
Confidence 33 578998854 234444555543 6678877642 125555433 56798864210 11 112233333
Q ss_pred EeecCCcEEEEEcCCCCCCCCeEEEEECCCCcccc
Q 007111 259 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 293 (617)
Q Consensus 259 v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W~~ 293 (617)
.. ..+.+|++|+.. .+++-.-....|..
T Consensus 257 ~~--~~~~~~~~g~~g-----~i~~S~DgG~tW~~ 284 (327)
T 2xbg_A 257 YR--TPNEVWLAGGAG-----ALLCSQDGGQTWQQ 284 (327)
T ss_dssp ES--SSSCEEEEESTT-----CEEEESSTTSSCEE
T ss_pred ec--CCCEEEEEeCCC-----eEEEeCCCCcccEE
Confidence 32 235688887642 34433333456754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=91.23 E-value=3.9 Score=40.71 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=58.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE----CCEEEEEeecCCCCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~----~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
+++.++.|+.+ ..+.+||+.+.....+.. +........++.+ ++.+++.|+.+. .+.+||+
T Consensus 24 ~g~~lasgs~D------~~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~ 88 (316)
T 3bg1_A 24 YGTRLATCSSD------RSVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWRE 88 (316)
T ss_dssp GGCEEEEEETT------TEEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECC
T ss_pred CCCEEEEEeCC------CeEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEEC
Confidence 45677777753 257777877665433321 1111111122222 256777777654 3788998
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEEC---CcEEEEEccCCCCCCCCeEEEEECCCC-cEEEe
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRI 190 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~---~~~LyV~GG~~~~~~~n~v~~yD~~t~-~W~~~ 190 (617)
.+..|..+.....-. ..-.+++... +. +++.|+.++. +..||..+. .|...
T Consensus 89 ~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~-~lasgs~D~~-----i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHD--SSVNSVCWAPHDYGL-ILACGSSDGA-----ISLLTYTGEGQWEVK 143 (316)
T ss_dssp SSSCCCEEEEECCCS--SCCCEEEECCTTTCS-CEEEECSSSC-----EEEEEECSSSCEEEC
T ss_pred CCCcceEEEEccCCC--CceEEEEECCCCCCc-EEEEEcCCCC-----EEEEecCCCCCccee
Confidence 887775542110001 1111233332 34 6777777643 788888765 57543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=91.19 E-value=11 Score=37.76 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=14.0
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECC
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFE 183 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~ 183 (617)
+++ +++.|+.++ .+..||+.
T Consensus 224 ~g~-~l~sgs~dg-----~v~iwd~~ 243 (343)
T 2xzm_R 224 NGK-YIATGGKDK-----KLLIWDIL 243 (343)
T ss_dssp TSS-EEEEEETTC-----EEEEEESS
T ss_pred CCC-EEEEEcCCC-----eEEEEECC
Confidence 455 677787764 48889984
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=91.13 E-value=7.7 Score=37.99 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=54.7
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCcccEEEEE-CC---cEEEEEccCCCCCCCCeEEEEE
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSPRSNHVAALY-DD---KNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~h~a~~~-~~---~~LyV~GG~~~~~~~n~v~~yD 181 (617)
+.+++.||.++. +.+||..+. .|.... .+..-...-.++.+ .+ ..+++.|+.++. +.+||
T Consensus 170 ~~~l~sgs~D~~------v~lwd~~~~~~~~~~~~---~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-----v~iWd 235 (297)
T 2pm7_B 170 SRKFVTGGADNL------VKIWKYNSDAQTYVLES---TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-----CIIWT 235 (297)
T ss_dssp CCEEEEEETTSC------EEEEEEETTTTEEEEEE---EECCCSSCEEEEEECCCCSSSEEEEEEETTSC-----EEEEE
T ss_pred cceEEEEcCCCc------EEEEEEcCCCceEEEEE---EecCCCCceEEEEECCCCCCceEEEEEECCCc-----EEEEE
Confidence 356777776543 666666543 354432 11111111122222 22 237777777653 77888
Q ss_pred CCC--CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcEEEee
Q 007111 182 FET--MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAI 241 (617)
Q Consensus 182 ~~t--~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~ 241 (617)
+.+ ..|........ ..+..-.+++.. ++.+++.||..+. +.+++.. ...|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~las~~~D~~-----v~lw~~~~~g~w~~~~ 293 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNK-----VTLWKENLEGKWEPAG 293 (297)
T ss_dssp ESSTTSCCEEEESSSS-CCSSCEEEEEECSSSCCEEEEETTSC-----EEEEEECTTSCEEEC-
T ss_pred eCCCCCccceeeeecc-cCCCcEEEEEECCCCCEEEEEcCCCc-----EEEEEECCCCcEEecc
Confidence 765 34554322100 111222233332 5667777775432 5555544 45787754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=90.64 E-value=13 Score=36.24 Aligned_cols=189 Identities=13% Similarity=0.038 Sum_probs=92.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc----EEEeeccCCCCCCcceeEEEEECCE-EEEEeecCCCCCccCeEEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC----WSVVEAKGDIPVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFD 130 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~g~~P~~R~~~s~~~~~~~-IYv~GG~~~~~~~~~~v~~yD 130 (617)
++.+++.|+.+ ..+.+||..+.. ..... . ...........-++. +++.|+.++ .+.+||
T Consensus 22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~~~dg------~i~~wd 85 (342)
T 1yfq_A 22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSL---R-YKHPLLCCNFIDNTDLQIYVGTVQG------EILKVD 85 (342)
T ss_dssp GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEE---E-CSSCEEEEEEEESSSEEEEEEETTS------CEEEEC
T ss_pred CCCEEEEEcCC------CeEEEEEeCCCCccccceeee---e-cCCceEEEEECCCCCcEEEEEcCCC------eEEEEE
Confidence 45566666642 257777766655 32222 1 111111122223566 777777543 489999
Q ss_pred C-CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC---c----EEEeecCCCCCCCCcc
Q 007111 131 L-KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---I----WTRIKIRGFHPSPRAG 202 (617)
Q Consensus 131 ~-~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~---~----W~~~~~~g~~P~~R~~ 202 (617)
+ .+.....+. +. +....-.+++...+. +++.|+.++ .+..||+.+. . ...+... ..+..-
T Consensus 86 ~~~~~~~~~~~--~~-~~~~~v~~l~~~~~~-~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v 153 (342)
T 1yfq_A 86 LIGSPSFQALT--NN-EANLGICRICKYGDD-KLIAASWDG-----LIEVIDPRNYGDGVIAVKNLNSNNT---KVKNKI 153 (342)
T ss_dssp SSSSSSEEECB--SC-CCCSCEEEEEEETTT-EEEEEETTS-----EEEEECHHHHTTBCEEEEESCSSSS---SSCCCE
T ss_pred eccCCceEecc--cc-CCCCceEEEEeCCCC-EEEEEcCCC-----eEEEEcccccccccccccCCeeeEE---eeCCce
Confidence 9 888776553 10 111112233333455 677777664 4888887540 0 1112111 122222
Q ss_pred eEEEEECCEEEEEecCCCCCccceEEEEECCC-Cc--EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCC
Q 007111 203 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILK-GE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSN 279 (617)
Q Consensus 203 ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~-~~--W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~ 279 (617)
.+++..++. +++|+.. ..+.+||+.+ .. ...... + .......+.+... ++.+++.|+.++
T Consensus 154 ~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~-----~~~~i~~i~~~~~-~~~~l~~~~~dg---- 216 (342)
T 1yfq_A 154 FTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-G-----LKYQIRDVALLPK-EQEGYACSSIDG---- 216 (342)
T ss_dssp EEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-S-----CSSCEEEEEECSG-GGCEEEEEETTS----
T ss_pred EEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-C-----CCCceeEEEECCC-CCCEEEEEecCC----
Confidence 344444556 5555543 3588999877 33 222221 1 1112334444320 244677777643
Q ss_pred eEEEEECCCC
Q 007111 280 QVEVLSIEKN 289 (617)
Q Consensus 280 dV~vyd~~~~ 289 (617)
.|.+|+....
T Consensus 217 ~i~i~~~~~~ 226 (342)
T 1yfq_A 217 RVAVEFFDDQ 226 (342)
T ss_dssp EEEEEECCTT
T ss_pred cEEEEEEcCC
Confidence 5666666543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=90.63 E-value=20 Score=38.21 Aligned_cols=183 Identities=8% Similarity=0.036 Sum_probs=89.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
+++.++.|+.+ ..+.+||........+.. ........+...++.+++.|+.+. .+.+||.....
T Consensus 355 ~g~~l~~~~~d------g~v~~~~~~~~~~~~~~~----~~~~v~~~~~s~dg~~l~~~~~d~------~v~~~~~~~~~ 418 (577)
T 2ymu_A 355 DGQTIASASDD------KTVKLWNRNGQLLQTLTG----HSSSVRGVAFSPDGQTIASASDDK------TVKLWNRNGQL 418 (577)
T ss_dssp TSSEEEEEETT------SEEEEEETTCCEEEEEEC----CSSCEEEEEECTTSSCEEEEETTS------EEEEECTTCCE
T ss_pred CCCEEEEEeCC------CEEEEEcCCCCEEEEecC----CCCCeEEEEECCCCCEEEEEeCCC------EEEEEeCCCCE
Confidence 45666666642 257778865554444431 111111111122456667776543 47788865443
Q ss_pred EEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 136 WLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 136 W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
-..+. + ..... .+++.. +++ +++.|+.++ .+..||.....-..+... ...-.+++.. +++++
T Consensus 419 ~~~~~--~--~~~~v-~~~~~s~d~~-~l~~~~~d~-----~v~~w~~~~~~~~~~~~~-----~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 419 LQTLT--G--HSSSV-WGVAFSPDDQ-TIASASDDK-----TVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEEEE--C--CSSCE-EEEEECTTSS-EEEEEETTS-----EEEEEETTSCEEEEEECC-----SSCEEEEEECTTSCEE
T ss_pred EEEec--C--CCCCe-EEEEECCCCC-EEEEEcCCC-----EEEEEECCCCEEEEEcCC-----CCCEEEEEEcCCCCEE
Confidence 33332 1 11111 122233 455 667776653 488889765544443321 1112233333 66777
Q ss_pred EEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 214 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
+.|+.. ..+.+||.....-..+... ......+.+.. ++.+++.||.++ .|.+||...
T Consensus 483 as~~~d-----~~i~iw~~~~~~~~~~~~h-------~~~v~~l~~s~--dg~~l~s~~~dg----~v~lwd~~~ 539 (577)
T 2ymu_A 483 ASASDD-----KTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSP--DGQTIASASDDK----TVKLWNRNG 539 (577)
T ss_dssp EEEETT-----SEEEEEETTSCEEEEEECC-------SSCEEEEEECT--TSSCEEEEETTS----EEEEECTTS
T ss_pred EEEeCC-----CEEEEEcCCCCEEEEEeCC-------CCCEEEEEEcC--CCCEEEEEECcC----EEEEEeCCC
Confidence 777654 2477888655443333211 11233344432 244666777653 578888643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=90.36 E-value=18 Score=37.32 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=40.1
Q ss_pred CCEEEEEecCCC----CCccceEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 209 GTKWYIAGGGSR----KKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 209 ~~~IyI~GG~s~----~~~~~~v~~yDl~~~~W-~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
++++|+...... ....++++++|+.+.+- ..++. +...+++ .+..+++..+|+..+. .+.|.+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------g~~p~~i-~~s~Dg~~~l~v~~~~----~~~V~V 345 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------GHDVDAI-SVAQDGGPDLYALSAG----TEVLHI 345 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------CCCcCeE-EECCCCCeEEEEEcCC----CCeEEE
Confidence 578998754211 12346899999988765 33321 1112333 3333333356654422 258999
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
+|..+.+-
T Consensus 346 iD~~t~~v 353 (373)
T 2mad_H 346 YDAGAGDQ 353 (373)
T ss_pred EECCCCCE
Confidence 99988763
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=90.29 E-value=20 Score=40.57 Aligned_cols=181 Identities=9% Similarity=0.040 Sum_probs=96.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc-C
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK-G 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-g 92 (617)
+.+++||+.+.++..... . .+.. -.+++..++.|||... ..+++||+.++++...... .
T Consensus 82 ~Gl~~yd~~~~~f~~~~~----------~-~~~~-i~~i~~~~g~lWigt~--------~Gl~~~~~~~~~~~~~~~~~~ 141 (758)
T 3ott_A 82 NGILVYNYRADRYEQPET----------D-FPTD-VRTMALQGDTLWLGAL--------NGLYTYQLQSRKLTSFDTRRN 141 (758)
T ss_dssp TEEEEEETTTTEECCCSC----------C-CCSC-EEEEEEETTEEEEEET--------TEEEEEETTTCCEEEECHHHH
T ss_pred CCeEEEeCCCCEEECccc----------C-CCce-EEEEEecCCcEEEEcC--------CcceeEeCCCCeEEEeccCCC
Confidence 357889988887654111 1 1111 1234445788887522 1589999999988876311 1
Q ss_pred CCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCC-CCCcccEEEEEC-CcEEEEEccCC
Q 007111 93 DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYD-DKNLLIFGGSS 169 (617)
Q Consensus 93 ~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~h~a~~~~-~~~LyV~GG~~ 169 (617)
.+|... -.+++.. ++.||+. .. +-+++||+.+.++..+....... ....-.+++... +..|+| |- .
T Consensus 142 ~l~~~~-i~~i~~d~~g~lWig--t~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt-~ 210 (758)
T 3ott_A 142 GLPNNT-IYSIIRTKDNQIYVG--TY------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GT-E 210 (758)
T ss_dssp CCSCSC-EEEEEECTTCCEEEE--ET------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EE-E
T ss_pred CcCCCe-EEEEEEcCCCCEEEE--eC------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE-EE-C
Confidence 223221 1223333 5688873 11 34889999998887663111100 011111222222 343565 22 1
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 170 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
..+++||+.+.++...... +. ..-.+++.. ++.++|.-. .-+++||+.+..+....
T Consensus 211 -----~Gl~~~~~~~~~~~~~~~l---~~-~~i~~i~~d~~g~lWigT~-------~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 211 -----GYLFQYFPSTGQIKQTEAF---HN-NSIKSLALDGNGDLLAGTD-------NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp -----EEEEEEETTTTEEEEEEEE---EE-EEEEEEEECTTCCEEEEET-------TEEEEECCTTSCCEEEC
T ss_pred -----CCCeEEcCCCCeEEeccCC---CC-CeEEEEEEcCCCCEEEEeC-------CceeEEecCCCcEEEEE
Confidence 1389999999988766432 11 111233333 566776431 13788998887776653
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=8.9 Score=41.38 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=98.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++++|+|-|. .+|+||..+++.....=. .+|. .. ++....+++|+|-| +..|+||+.+.+
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~-gi~~--iD-AA~~~~g~~YfFkG--------~~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSWP-AVGN--CT-SALRWLGRYYCFQG--------NQFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECCT-TSCC--CS-EEEEETTEEEEEET--------TEEEEECTTTCC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccCC-CCCc--cc-hheeeCCceEEEEC--------CEEEEEcCccCc
Confidence 6788999874 589999998876532211 2332 33 44445689999965 346777765532
Q ss_pred ------------EEEeecCC------------CCC-----CCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 136 ------------WLPLHCTG------------TGP-----SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 136 ------------W~~l~~~g------------~~P-----~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
|..++..| ..| ..... +++. .++. +|+|-|. ..|++|...+
T Consensus 218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~D-Ai~~~~~G~-tYFFKg~-------~yWR~~~~~~ 288 (460)
T 1qhu_A 218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLS-AMVSDNHGA-TYVFSGS-------HYWRLDTNRD 288 (460)
T ss_dssp CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCC-EEEECTTCC-EEEEETT-------EEEECTTGGG
T ss_pred ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcC-EEEecCCCe-EEEEeCC-------EEEEEecCCC
Confidence 22211000 001 11122 3333 2455 8998774 3777776543
Q ss_pred cEEEeec---CCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCC------CCCCC--Ccce
Q 007111 186 IWTRIKI---RGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS------SSVTS--NKGF 254 (617)
Q Consensus 186 ~W~~~~~---~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~------~~p~~--r~~~ 254 (617)
.+..... -+.+|.. --++...++++|+|=| +..|+|+.... .+.++..|. ..|.. ....
T Consensus 289 ~~~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~I 358 (460)
T 1qhu_A 289 GWHSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAV 358 (460)
T ss_dssp CCCCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCC
T ss_pred CcCccchhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcc
Confidence 3322111 1223333 2345556899999977 45888986531 222211010 01111 1123
Q ss_pred EEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 255 TLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 255 s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
-++... ...+.+|+|-|. ..|.||...
T Consensus 359 DAA~~~-~~~~ktyfFkG~------~ywryd~~~ 385 (460)
T 1qhu_A 359 DAAFVC-PGSSRLHIMAGR------RLWWLDLKS 385 (460)
T ss_dssp CEEECC-TTCCEEEEEETT------EEEEEEGGG
T ss_pred cEEEEe-CCCCEEEEEECC------EEEEEECCC
Confidence 333332 235778888774 789999863
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=89.37 E-value=5.5 Score=39.53 Aligned_cols=111 Identities=9% Similarity=0.122 Sum_probs=53.6
Q ss_pred EEEEEeecCCCCCccCeEEEEECCC-CcEEEeecCCCCCCCCcccEEEEE--CC----cEEEEEccCCCCCCCCeEEEEE
Q 007111 109 VLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALY--DD----KNLLIFGGSSKSKTLNDLYSLD 181 (617)
Q Consensus 109 ~IYv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~~~g~~P~~R~~h~a~~~--~~----~~LyV~GG~~~~~~~n~v~~yD 181 (617)
.+++.||.++ .+.+||..+ ..|..+. .+..-...-.++.+ ++ . +++.|+.++ .|.+||
T Consensus 180 ~~l~sgs~D~------~v~lWd~~~~~~~~~~~---~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~-----~v~iw~ 244 (316)
T 3bg1_A 180 KRFASGGCDN------LIKLWKEEEDGQWKEEQ---KLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDG-----RVFIWT 244 (316)
T ss_dssp CBEECCBTTS------BCCEEEECTTSCEEEEE---CCBCCSSCEEEEECCCCSSCSCC-EEEEEETTC-----EEEEEE
T ss_pred ceEEEecCCC------eEEEEEeCCCCccceee---ecccCCCceEEEEecCCCCCCCc-eEEEEcCCC-----eEEEEE
Confidence 4566666543 355666653 4576653 22111111122222 21 4 677777764 488888
Q ss_pred CCC---CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC-CCcEEEeec
Q 007111 182 FET---MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAIT 242 (617)
Q Consensus 182 ~~t---~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~-~~~W~~l~~ 242 (617)
+.+ ..|...... .....-.+++.. ++.+++.||..+. +.+|+.. ...|..+..
T Consensus 245 ~~~~~~~~~~~~~~~---~~~~~v~~v~~sp~g~~las~~~D~~-----v~lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 245 CDDASSNTWSPKLLH---KFNDVVWHVSWSITANILAVSGGDNK-----VTLWKESVDGQWVCISD 302 (316)
T ss_dssp CSSTTCCCCBCCEEE---ECSSCEEEEEECTTTCCEEEEESSSC-----EEEEEECTTSCEEEEEE
T ss_pred ccCccccchhhhhhh---cCCCcEEEEEEcCCCCEEEEEcCCCe-----EEEEEECCCCcEEEeee
Confidence 765 333211110 001112233332 5667777775533 5566654 457887654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=89.18 E-value=32 Score=38.51 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=61.5
Q ss_pred ceEEEEECCCCc--EEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEee
Q 007111 14 DDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 89 (617)
Q Consensus 14 ~~v~~yd~~t~~--W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 89 (617)
..++++|..+.+ |+.-......... .........+.+..+++||+.... ..++.+|..+.+ |+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~d-------g~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKAR---TSCCDAVNRGVALWGDKVYVGTLD-------GRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEEBTEEEEECTT-------SEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccc---cccccCCccceEEECCEEEEEcCC-------CEEEEEECCCCCEeeeecc
Confidence 469999987665 9865431000000 000000012345568888876421 369999998875 87654
Q ss_pred ccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 90 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 90 ~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.. .........+-++.++.+|+-.+.... .....++.||+.+.+ |+.-
T Consensus 146 ~~-~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 146 TD-PAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp SC-TTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred CC-CCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEec
Confidence 21 001112222334568888774332211 134679999999876 8864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.11 E-value=22 Score=36.44 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=80.8
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++.+++.|+.+ ..+.+||+.+..-...- ..+.......++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence 46777777753 36899999887643222 11111122223333 567777777654 488999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE----CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC--C------CC---
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY----DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--H------PS--- 198 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~----~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~--~------P~--- 198 (617)
.+....- ..+....-.+++.. .+..+++.|+.++ .|.+||+.++.....-.... + |.
T Consensus 246 ~~~~~~~---~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 246 NVLIRSW---SFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp TEEEEEE---BCTTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred ccEEEEE---ecCCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence 7654321 11111111111111 2333566666553 48999998776543322100 0 10
Q ss_pred -----------CCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 199 -----------PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 199 -----------~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
...-.+++..++.+++.||..+ .+.+||+.+..
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 361 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATS-----SIVMFSLNELS 361 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT-----EEEEEETTCGG
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCC-----eEEEEECCCcc
Confidence 0111233444778888888653 48888887654
|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.88 E-value=3 Score=38.58 Aligned_cols=100 Identities=28% Similarity=0.265 Sum_probs=62.2
Q ss_pred hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCcchhhhHHH
Q 007111 482 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAF 561 (617)
Q Consensus 482 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~~~~~~~~~ 561 (617)
...|+-||+++-..+-+=-..-.-.=|+-.++-+.++....-.-.|.+|++.++-+.. -||.|++-
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~--------------~Leke~~~ 73 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKS--------------QTDKDYYQ 73 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 4567777777655442221111222355556666677766677789999999986543 37888888
Q ss_pred HHHHHHH----------HHHhhhhhccchhhhccccccchhhHHHHHHHHhhhh
Q 007111 562 LKAVLDD----------TQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 605 (617)
Q Consensus 562 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (617)
|-|-|+. +.+||.. |--.|+-|+.++|.++..++
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~----------ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQA----------RITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 8887763 3344443 44556677888887777655
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=88.53 E-value=20 Score=35.84 Aligned_cols=145 Identities=10% Similarity=-0.009 Sum_probs=77.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.+|+++... ..+++||+.++...... .+. .....+..-++.+|+... ..+++||+.+.+
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~----~~~-~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~ 120 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHA----LPF-MGSALAKISDSKQLIASD--------DGLFLRDTATGV 120 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEE----CSS-CEEEEEEEETTEEEEEET--------TEEEEEETTTCC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEE----CCC-cceEEEEeCCCeEEEEEC--------CCEEEEECCCCc
Confidence 36788886431 36999999988766554 122 122222234678777531 349999999998
Q ss_pred EEEeecCC-CCCCCCcccEEEEE-CCcEEEEEcc-CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-
Q 007111 136 WLPLHCTG-TGPSPRSNHVAALY-DDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT- 210 (617)
Q Consensus 136 W~~l~~~g-~~P~~R~~h~a~~~-~~~~LyV~GG-~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~- 210 (617)
+..+.... ..+..+.. .+++. +++ +|+... .........+++|| +++...+... ... ...++.. ++
T Consensus 121 ~~~~~~~~~~~~~~~~~-~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----~~~-~~~i~~s~dg~ 191 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSN-DGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----ISI-PNSICFSPDGT 191 (326)
T ss_dssp EEEEECSSTTCTTEEEE-EEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----ESS-EEEEEECTTSC
T ss_pred EEEEeeCCCCCCCCCCC-CEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----Ccc-cCCeEEcCCCC
Confidence 88764211 11111111 22222 345 666331 11112345799999 5666654321 011 1233333 33
Q ss_pred EEEEEecCCCCCccceEEEEECC
Q 007111 211 KWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.+|+..... ..+++||+.
T Consensus 192 ~lyv~~~~~-----~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDTKV-----NRLMRVPLD 209 (326)
T ss_dssp EEEEEETTT-----CEEEEEEBC
T ss_pred EEEEEECCC-----CEEEEEEcc
Confidence 677775322 468999975
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=88.45 E-value=11 Score=40.87 Aligned_cols=111 Identities=18% Similarity=0.065 Sum_probs=61.4
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
.++.++++.+..+ .+.+||+.+.....+.. .+. ... ...-+++.+++++.+..+ ...++++|+.+.
T Consensus 120 dg~~~~~~s~~~~------~~~l~d~~~g~~~~l~~---~~~--~~~-~~spDG~~la~~~~~~~~--~~~i~~~d~~~g 185 (582)
T 3o4h_A 120 TGEAVVFTGATED------RVALYALDGGGLRELAR---LPG--FGF-VSDIRGDLIAGLGFFGGG--RVSLFTSNLSSG 185 (582)
T ss_dssp CSSCEEEEEECSS------CEEEEEEETTEEEEEEE---ESS--CEE-EEEEETTEEEEEEEEETT--EEEEEEEETTTC
T ss_pred CCCeEEEEecCCC------CceEEEccCCcEEEeec---CCC--ceE-EECCCCCEEEEEEEcCCC--CeEEEEEcCCCC
Confidence 3455655554321 23477888887766652 122 222 223355555555544322 245999999999
Q ss_pred cEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 188 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~ 188 (617)
.++.+. ..+ .. ....+.. +++.|+ .+..++ ...|+++|+.++...
T Consensus 186 ~~~~l~---~~~-~~-~~~~~~SpDG~~l~-~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 186 GLRVFD---SGE-GS-FSSASISPGMKVTA-GLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp CCEEEC---CSS-CE-EEEEEECTTSCEEE-EEECSS---CEEEEEECTTTCCEE
T ss_pred CceEee---cCC-Cc-cccceECCCCCEEE-EccCCC---eeEEEEEcCCCCcEE
Confidence 988773 111 11 1222232 566455 433332 246999999998887
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=88.16 E-value=16 Score=34.43 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=83.7
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeecc---CCCCCCcceeEEEE-ECCEEEEEeecCCCCCcc
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKL 123 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~---g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~ 123 (617)
-+++..++++|+|=|. .+|+++... ......... ..+|. ...++... .++++|+|-|
T Consensus 10 DAi~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~-~IDAa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 10 DAIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR-KLDSVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS-SCSEEEECTTTCCEEEEET--------
T ss_pred CEEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCC-CccEEEEECCCCeEEEEeC--------
Confidence 3566679999999764 589998765 333333222 13443 23333322 2578999865
Q ss_pred CeEEEEECCCCcE-EEeecCCCCCCC--CcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----ee-cCC
Q 007111 124 NDLHMFDLKSLTW-LPLHCTGTGPSP--RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IK-IRG 194 (617)
Q Consensus 124 ~~v~~yD~~t~~W-~~l~~~g~~P~~--R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~-~~g 194 (617)
+..|+|+..+..- +.+..- .+|.. ....+.. ..+..+|+|-|. ..|+||..+.+-.. +. .-+
T Consensus 73 ~~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~-~~~g~~yfFkg~-------~ywr~d~~~~~~~~gyPr~i~~~w~ 143 (195)
T 1itv_A 73 RQVWVYTGASVLGPRRLDKL-GLGADVAQVTGALR-SGRGKMLLFSGR-------RLWRFDVKAQMVDPRSASEVDRMFP 143 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEE-CSTTEEEEEETT-------EEEEEETTTTEECGGGCEEHHHHST
T ss_pred CEEEEEcCCccCCCEEeeec-ccCCCccceeEEEE-cCCCeEEEEeCC-------EEEEEeCCcccccCCCccChhhcCC
Confidence 4578887543111 112111 23332 2332333 333348999773 58999987654221 11 111
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 195 FHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 195 ~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
-.| ..-.++...++.+|++-| +..|+||..+..-
T Consensus 144 Gvp--~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~v 177 (195)
T 1itv_A 144 GVP--LDTHDVFQFREKAYFCQD-------RFYWRVSSRSELN 177 (195)
T ss_dssp TSC--SSCSEEEEETTEEEEEET-------TEEEEEECCTTCC
T ss_pred CCC--CCCCEEEEeCCeEEEEeC-------CEEEEEECCccEE
Confidence 112 223455556899999987 3588999876653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=88.10 E-value=19 Score=35.20 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=58.3
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
+.+++.|+.++ .+.+||+.+.+-...-. + ....-.+++.. ++. +++.|+.++. |..||+.++
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~-~---~~~~i~~~~~~~~~~~-~l~s~~~dg~-----i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV-G---HGNAINELKFHPRDPN-LLLSVSKDHA-----LRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE-S---CCSCEEEEEECSSCTT-EEEEEETTSC-----EEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec-C---CCCcEEEEEECCCCCC-EEEEEeCCCe-----EEEEEeecC
Confidence 56788887644 58899988765432210 1 11111122333 345 7788887643 999999887
Q ss_pred cEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCC
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
........ .......-.+++.. ++..++.|+..+ .+.+||+.+.
T Consensus 149 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 193 (366)
T 3k26_A 149 TLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRINSK 193 (366)
T ss_dssp EEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESCSH
T ss_pred eEEEEecc-cccccCceeEEEECCCCCEEEEecCCC-----CEEEEECCCC
Confidence 65544311 00111222233333 456667776543 4888888764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=38 Score=37.89 Aligned_cols=149 Identities=14% Similarity=0.056 Sum_probs=82.4
Q ss_pred eEEEEEECCCC--cEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCC---cEEEeecCCCCCC
Q 007111 73 VSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPS 147 (617)
Q Consensus 73 ~~v~~yd~~t~--~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~ 147 (617)
+.+|.+|..+. .|..+.. +...........++.||+....+.. ...++.+|+.+. .|+.+.+. -.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~--~~- 328 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPE--RQ- 328 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECC--CS-
T ss_pred cEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecC--CC-
Confidence 58999998766 6877752 2222222244568899998776432 467999999874 48877421 11
Q ss_pred CCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEE-ecCCCCCcc
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIA-GGGSRKKRH 224 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~--~~~~IyI~-GG~s~~~~~ 224 (617)
. . . .+..++..|++..-.++ ...++++|+.+.....+.. |.......... .++.+++. .+.. .-
T Consensus 329 ~-~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~~----p~~~~~~~~~~~~d~~~l~~~~ss~~---tP 395 (693)
T 3iuj_A 329 Q-V-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREVAL----PGLGSVSGFNGKHDDPALYFGFENYA---QP 395 (693)
T ss_dssp S-C-E-EEEEETTEEEEEEEETT---EEEEEEECTTSCEEEEECC----SSSSEEEECCCCTTCSCEEEEEECSS---SC
T ss_pred C-E-E-EEEEECCEEEEEEEECC---eeEEEEEECCCCeeEEeec----CCCceEEeeecCCCCCEEEEEecCCC---CC
Confidence 1 1 1 33334443554433222 2468999998665554432 22111111111 12334433 2222 22
Q ss_pred ceEEEEECCCCcEEEeecCC
Q 007111 225 AETLIFDILKGEWSVAITSP 244 (617)
Q Consensus 225 ~~v~~yDl~~~~W~~l~~~~ 244 (617)
..++.||+.+..++.+...+
T Consensus 396 ~~l~~~d~~~g~~~~l~~~~ 415 (693)
T 3iuj_A 396 PTLYRFEPKSGAISLYRASA 415 (693)
T ss_dssp CEEEEECTTTCCEEEEECCC
T ss_pred CEEEEEECCCCeEEEEEeCC
Confidence 56999999988888876433
|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.98 E-value=4.2 Score=40.25 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 007111 469 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 538 (617)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q 538 (617)
|..++++..+-.+-+.|-.+|++....+..++..+..+-.....+++.+.....+++.+++++...+..+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666667777777777777776666666666677777766667777777666655443
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=16 Score=38.57 Aligned_cols=130 Identities=15% Similarity=0.291 Sum_probs=79.0
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcc--eeEEEEECCEEEEEeecCCCC------
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS--GHTVVRASSVLILFGGEDGKR------ 120 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~--~~s~~~~~~~IYv~GG~~~~~------ 120 (617)
-.|+-.+++.+|+.--...+...-+.+.+.+.....|..+. +|.... ..-.+.+++.||+||-....+
T Consensus 341 EPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~ 416 (670)
T 3ju4_A 341 EPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 416 (670)
T ss_dssp EEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred cchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhhee----ccccccccCCCcceeCCEEEEEeccccccccccCC
Confidence 45666789999999633333344467888898899999986 343222 222556799999999753211
Q ss_pred ---Cc---cCeEEE--EEC-----CCCcEEEee---cCCCCCCCCcccEEEEECCcE-EEEEccCCC-------------
Q 007111 121 ---RK---LNDLHM--FDL-----KSLTWLPLH---CTGTGPSPRSNHVAALYDDKN-LLIFGGSSK------------- 170 (617)
Q Consensus 121 ---~~---~~~v~~--yD~-----~t~~W~~l~---~~g~~P~~R~~h~a~~~~~~~-LyV~GG~~~------------- 170 (617)
++ ....++ .++ +.-+|..+. ..|..--.-.+-.++++++.. .|||||.+.
T Consensus 417 pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN~~k~ 496 (670)
T 3ju4_A 417 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKD 496 (670)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTTTTCC
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccccccC
Confidence 11 112222 222 233576663 225555555666777777774 489999631
Q ss_pred ----CCCCCeEEEEEC
Q 007111 171 ----SKTLNDLYSLDF 182 (617)
Q Consensus 171 ----~~~~n~v~~yD~ 182 (617)
.....++|+|.+
T Consensus 497 ~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 497 PFKSDGHPSDLYCYKM 512 (670)
T ss_dssp TTSTTCCCCEEEEEEE
T ss_pred ccccCCCCcceEEEEE
Confidence 124567888865
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.02 E-value=30 Score=35.55 Aligned_cols=197 Identities=10% Similarity=0.056 Sum_probs=100.8
Q ss_pred EEEEEECCC--CcEEEeeccCCCCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCC
Q 007111 74 SVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 148 (617)
Q Consensus 74 ~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 148 (617)
.++.|+... .+|..... .+....-++++.. .+.||+.+..... -.-+++.+-...+|+.+.....++..
T Consensus 32 Gl~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~ 105 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKA 105 (394)
T ss_dssp EEEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCC
T ss_pred ceEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCc
Confidence 377777655 78998741 1222233444443 4578876543211 12577777677889988521112211
Q ss_pred --C-----cccE-EEEEC----CcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCC--------------CCCcc
Q 007111 149 --R-----SNHV-AALYD----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP--------------SPRAG 202 (617)
Q Consensus 149 --R-----~~h~-a~~~~----~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P--------------~~R~~ 202 (617)
+ ..+. +..++ ...+|+.+. . ..|++.+-...+|+.+......| .....
T Consensus 106 ~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~-----ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 106 PEGETGRVVDHVFWLTPGHASEPGTWYAGTS-P-----QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp C----CCCCCEEEEEEECCTTSTTCEEEEEE-T-----TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccccccccccceeEEEeCCCCCCCEEEEEec-C-----CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1 1111 22232 343666542 1 24888887888999885421111 11223
Q ss_pred eEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC--CCCCC----cceEEEEEeecCCcEEEEEcCC
Q 007111 203 CCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS--SVTSN----KGFTLVLVQHKEKDFLVAFGGI 273 (617)
Q Consensus 203 ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~--~p~~r----~~~s~v~v~~~~~~~L~I~GG~ 273 (617)
++++.. .+.||+..+. .-+++.+-...+|+.+...... .|... .....+.+...+.+.||+..+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~- 252 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH- 252 (394)
T ss_dssp EEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-
T ss_pred eEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-
Confidence 344443 2567776432 2377777777899987531110 11111 112333443333366666332
Q ss_pred CCCCCCeEEEEECCCCccccc
Q 007111 274 KKEPSNQVEVLSIEKNESSMG 294 (617)
Q Consensus 274 ~~~~~~dV~vyd~~~~~W~~~ 294 (617)
..|++++-....|...
T Consensus 253 -----~gl~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 253 -----CGIYRMDRREGVWKRI 268 (394)
T ss_dssp -----TEEEEEETTTTEEECG
T ss_pred -----CeEEEeCCCCCcceEC
Confidence 2588888777788554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=86.92 E-value=35 Score=37.84 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=58.5
Q ss_pred ceEEEEEC-CCCc--EEEccccccCCCCCCCCCCCcc--cceEEEE--ECCE----EEEEcccCCCCCCceEEEEEECCC
Q 007111 14 DDVQVLNF-DRFS--WTAASSKLYLSPSSLPLKIPAC--RGHSLIS--WGKK----VLLVGGKTDSGSDRVSVWTFDTET 82 (617)
Q Consensus 14 ~~v~~yd~-~t~~--W~~l~~~~~~~p~~~~~~~p~r--~~hs~v~--~g~~----lyV~GG~~~~~~~~~~v~~yd~~t 82 (617)
..++++|. .+.+ |+.-....... .+.+.+ ...+.+. .+++ ||+.... ..++.+|..+
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~-----~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-------g~l~AlDa~T 140 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAA-----RAVACCDLVNRGLAYWPGDGKTPALILKTQLD-------GNVAALNAET 140 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGG-----GGGCSSCSCCCCCEEECCCSSSCCEEEEECTT-------SEEEEEETTT
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccc-----cccccccccccceEEEecCCcceeEEEEEcCC-------CEEEEEECCC
Confidence 46999999 6665 97654311000 000000 0112334 4666 8775321 3699999988
Q ss_pred Cc--EEEeeccCCCCC-CcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEe
Q 007111 83 EC--WSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 139 (617)
Q Consensus 83 ~~--W~~~~~~g~~P~-~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 139 (617)
.+ |+.-.. .... .....+-++.++.||+-++.... .....++.||+.+.+ |+.-
T Consensus 141 G~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 141 GETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp CCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEeecCC--CCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEc
Confidence 75 876431 1000 01112234468888764432111 124679999999875 8865
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=2.1 Score=56.56 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=42.5
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhc-ccccccCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 007111 498 AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS-LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 576 (617)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (617)
+|++-|..+.++.+++|++.+.+.++.+.+.++.+.++.-++++.. |....=+ .-++.+++.+.+-|+.++++|...
T Consensus 1956 ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa--~Pkr~~l~~ae~~l~~~~~~L~~~ 2033 (3245)
T 3vkg_A 1956 QANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT--GPLREEVEQLENAANELKLKQDEI 2033 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666665555555554444444333333322 2222111 344566667777777777776666
Q ss_pred ccchhh
Q 007111 577 RGVLAG 582 (617)
Q Consensus 577 ~~~~~~ 582 (617)
+.-|+.
T Consensus 2034 ~~~L~~ 2039 (3245)
T 3vkg_A 2034 VATITA 2039 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665553
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=86.39 E-value=43 Score=36.81 Aligned_cols=225 Identities=12% Similarity=0.120 Sum_probs=111.7
Q ss_pred ceEEEEECCCCcEEE-ccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECC--CCcEEEe
Q 007111 14 DDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTE--TECWSVV 88 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~-l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~--t~~W~~~ 88 (617)
+.+.++|+.+.+-.. +.. ... -|.++.. +.++|+.+. ...+.+||+. +.+ .+
T Consensus 177 ~~V~viD~~t~~v~~~i~~-------------g~~-p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~--~v 233 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDT-------------GYA-VHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPT--TV 233 (567)
T ss_dssp TEEEEEETTTCCEEEEEEC-------------SSC-EEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCC--EE
T ss_pred CeEEEEECCCCeEEEEEeC-------------CCC-ccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCc--Ee
Confidence 578999998876432 222 111 2444433 457787642 1369999995 443 22
Q ss_pred eccCCCCCCcceeEEEEE-----CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCC--------CCCCcccEE
Q 007111 89 EAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG--------PSPRSNHVA 154 (617)
Q Consensus 89 ~~~g~~P~~R~~~s~~~~-----~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~--------P~~R~~h~a 154 (617)
. .++.......++.- ++ ++|+.. . ..+.+.+||..+.+=.+.-..+.+ |.+|.....
T Consensus 234 ~---~i~~G~~P~~ia~s~~~~pDGk~l~v~n-~-----~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 234 A---EIKIGSEARSIETSKMEGWEDKYAIAGA-Y-----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp E---EEECCSEEEEEEECCSTTCTTTEEEEEE-E-----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred E---EEecCCCCceeEEccccCCCCCEEEEEE-c-----cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 2 12222222233333 44 666653 2 235688999887664332111111 233433322
Q ss_pred EEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccceEEEEEC
Q 007111 155 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 155 ~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~-~IyI~GG~s~~~~~~~v~~yDl 232 (617)
...++..+++.=. ..+.++.+|..+.....+... +.++.-|.+... ++ .+|+.... .+.+.++|.
T Consensus 305 ~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~ 371 (567)
T 1qks_A 305 ASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDT 371 (567)
T ss_dssp ECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEET
T ss_pred EcCCCCEEEEEec-----CCCeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEeCC-----CCeEEEEEC
Confidence 2233342333211 124689999877665544432 345555655544 34 44444322 357999999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 233 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 233 ~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
.+.+-...-......|.+..+. ..+ +.+.+.+|+.+-.. .+.|-++|..+.
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~--~~~-~p~~g~v~~t~~~g---~~~Vsvid~~~~ 422 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGA--NFV-HPTFGPVWATSHMG---DDSVALIGTDPE 422 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCE--EEE-ETTTEEEEEEEBSS---SSEEEEEECCTT
T ss_pred CCCcEEEEEeccCcCCCCccce--eeE-CCCCCcEEEeCCCC---CCeEEEecCCCC
Confidence 9886433222102233332222 222 33335667665321 236888887763
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=86.22 E-value=24 Score=33.74 Aligned_cols=157 Identities=7% Similarity=-0.041 Sum_probs=86.9
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCe
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~ 125 (617)
++++.. ++.||+.-.. ...+++|++....-..+... .+ .....+++. ++.||+..... ....
T Consensus 82 ~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~-~~---~~P~~i~vd~~~g~lyv~~~~~----~~~~ 147 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLFDT-GL---VNPRGIVTDPVRGNLYWTDWNR----DNPK 147 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECS-SC---SSEEEEEEETTTTEEEEEECCS----SSCE
T ss_pred cEEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEEEC-CC---CCccEEEEeeCCCEEEEEECCC----CCcE
Confidence 445543 5799988543 24689999876543333211 11 223344444 57999875321 1357
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 126 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 126 v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
++++++....-..+.. ..+ ..-..+++- +++.||+.-.. .+.|++||+.+..-..+.... ..| ++
T Consensus 148 I~~~~~dg~~~~~~~~-~~~---~~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~--~~P---~g 213 (267)
T 1npe_A 148 IETSHMDGTNRRILAQ-DNL---GLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGL--QYP---FA 213 (267)
T ss_dssp EEEEETTSCCCEEEEC-TTC---SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECC--CSE---EE
T ss_pred EEEEecCCCCcEEEEE-CCC---CCCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecCC--CCc---eE
Confidence 8999987544333321 111 112233443 34558887543 256999999764333332211 112 34
Q ss_pred EEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 205 GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 205 ~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
++..++.+|+....+ +.++++|+.+.+...
T Consensus 214 i~~d~~~lyva~~~~-----~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 214 VTSYGKNLYYTDWKT-----NSVIAMDLAISKEMD 243 (267)
T ss_dssp EEEETTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred EEEeCCEEEEEECCC-----CeEEEEeCCCCCceE
Confidence 555688999975433 468999998776443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=86.01 E-value=34 Score=36.26 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=41.5
Q ss_pred CCEEEEEecCC----CCCccceEEEEECCCCcEEE-eecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEE
Q 007111 209 GTKWYIAGGGS----RKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 283 (617)
Q Consensus 209 ~~~IyI~GG~s----~~~~~~~v~~yDl~~~~W~~-l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~v 283 (617)
++++|+.-... .....++++++|..+.+-.. ++ .+..-++ +.+..+++..+|+.-+. .+.|.+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-------vg~~P~g-ia~spDg~~~lyv~n~~----s~~VsV 397 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-------LGHEIDS-INVSQDAEPLLYALSAG----TQTLHI 397 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-------EEEEECE-EEECCSSSCEEEEEETT----TTEEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-------CCCCcCe-EEEccCCCEEEEEEcCC----CCeEEE
Confidence 67899974311 11234689999998875332 21 1222223 33443443377776643 358999
Q ss_pred EECCCCcc
Q 007111 284 LSIEKNES 291 (617)
Q Consensus 284 yd~~~~~W 291 (617)
+|..+.+-
T Consensus 398 ID~~t~kv 405 (426)
T 3c75_H 398 YDAATGEE 405 (426)
T ss_dssp EETTTCCE
T ss_pred EECCCCCE
Confidence 99998774
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=85.97 E-value=25 Score=33.72 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=94.4
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCC--CcEEEeeccCCCCCCcceeEEEEE----CCEEEEEeecCCCCCccCeEEEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMF 129 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~g~~P~~R~~~s~~~~----~~~IYv~GG~~~~~~~~~~v~~y 129 (617)
++.+++.|+.+ ..+.+||..+ ..|..... +........++.+ ++.+++.|+.++ .+.+|
T Consensus 22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~dg------~v~vw 86 (351)
T 3f3f_A 22 YGRHVATCSSD------QHIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYDK------TVKLW 86 (351)
T ss_dssp SSSEEEEEETT------SEEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETTS------CEEEE
T ss_pred CCCEEEEeeCC------CeEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCCC------eEEEE
Confidence 45666677653 2466666654 44554431 1111222222222 267778887654 37788
Q ss_pred ECCCC-------cEEEeecCCCCCCCCccc-EEEEEC---CcEEEEEccCCCCCCCCeEEEEECCCCc----EEEe---e
Q 007111 130 DLKSL-------TWLPLHCTGTGPSPRSNH-VAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRI---K 191 (617)
Q Consensus 130 D~~t~-------~W~~l~~~g~~P~~R~~h-~a~~~~---~~~LyV~GG~~~~~~~n~v~~yD~~t~~----W~~~---~ 191 (617)
|+.+. .|..+.. +....... +++... +. +++.|+.++ .+..||+.+.. |... .
T Consensus 87 d~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGL-KLACLGNDG-----ILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp EECTTSCTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCS-EEEEEETTC-----EEEEEECSSTTCTTCCEEEEEEE
T ss_pred ecCCCcccccccCcceeee---ecccCCceeEEEEcCCCCCc-EEEEecCCC-----cEEEecCCChHHhcccccccccc
Confidence 87764 3444421 11111111 223333 45 677777664 48899986543 2211 1
Q ss_pred cCCCCCCC--CcceEEEEE----CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCC-
Q 007111 192 IRGFHPSP--RAGCCGVLC----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK- 264 (617)
Q Consensus 192 ~~g~~P~~--R~~ha~v~~----~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~- 264 (617)
.....+.. ....++... ++..+++|+..+ .+..++.....+..+..... .......+.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPG----HKSLIRSISWAPSIGR 228 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCC----CCSCEEEEEECCCSSC
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCC----CCcceeEEEECCCCCC
Confidence 11001111 111222222 266777776543 24555556666544432221 122333444443221
Q ss_pred -cEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 265 -DFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 265 -~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
..+++.|+.++ .|.+||+...
T Consensus 229 ~~~~l~s~~~dg----~i~iwd~~~~ 250 (351)
T 3f3f_A 229 WYQLIATGCKDG----RIRIFKITEK 250 (351)
T ss_dssp SSEEEEEEETTS----CEEEEEEEEC
T ss_pred cceEEEEEcCCC----eEEEEeCCCC
Confidence 16888888764 4788887654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=53 Score=38.55 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=43.0
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCC----CCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG----KRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~----~~~~~~~v~~yD~ 131 (617)
+++.+++++.. ..++++|+.+.....+... ...........-+++.+++++.+. .......++++|+
T Consensus 389 DG~~la~~~~~------~~v~~~d~~tg~~~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 389 NGKFAVVANDR------FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp TSSEEEEEETT------SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred CCCEEEEECCC------CeEEEEECCCCceEEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 55555565542 3799999999887665421 111112222233566556665433 0112468999999
Q ss_pred CCCcEEEe
Q 007111 132 KSLTWLPL 139 (617)
Q Consensus 132 ~t~~W~~l 139 (617)
.+.+...+
T Consensus 460 ~~g~~~~l 467 (1045)
T 1k32_A 460 EGRKIFAA 467 (1045)
T ss_dssp TTTEEEEC
T ss_pred CCCcEEEe
Confidence 98876555
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
Probab=85.00 E-value=1.9 Score=51.71 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=39.8
Q ss_pred HhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH-HhHHhhhcccccccCCCcchhhhHHHHHHHHHHHH
Q 007111 492 ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE-LAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQ 570 (617)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e-~~qe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (617)
+...+++++..+.+.-+..++++++++...+|.+.|+|+...++ .-||..++ ...+|-.||..+.-|...+.+.+
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~----L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE----LKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666666666677777777766665443 11122222 23355555555555554444433
Q ss_pred H
Q 007111 571 K 571 (617)
Q Consensus 571 ~ 571 (617)
+
T Consensus 1051 ~ 1051 (1080)
T 2dfs_A 1051 K 1051 (1080)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.98 E-value=25 Score=36.03 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=79.0
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
++.+++.|+.++ .+.+||+.+.+-...-. +. +....-.+++...+..+++.|+.++ .+..||+.++.
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~-~~-~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQIIE-NS-PRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEEE-CC-GGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTE
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEEc-cC-CCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCcc
Confidence 367777777643 58999998876433210 11 0111111222333333777788764 39999998876
Q ss_pred EEEeecCCCCCCCCcceEEEEE-----CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC-------CC-----
Q 007111 187 WTRIKIRGFHPSPRAGCCGVLC-----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS-------VT----- 249 (617)
Q Consensus 187 W~~~~~~g~~P~~R~~ha~v~~-----~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~-------p~----- 249 (617)
....... +....-.+++.. ++.+++.|+.. ..+.+||+.+..-...-...... |.
T Consensus 248 ~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 248 LIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp EEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EEEEEec---CCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 5543221 111111122111 23455555443 35889998876533221101000 00
Q ss_pred --------CCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 250 --------SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 250 --------~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
......++.+. .+.+++.||.++ .|.+||+.+.+
T Consensus 320 ~~~~~~~~~~~~v~~l~~~---~~~~l~s~~~d~----~i~~wd~~~~~ 361 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS---NDKILLTDEATS----SIVMFSLNELS 361 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE---TTEEEEEEGGGT----EEEEEETTCGG
T ss_pred cceecccccCCceEEEEEC---CceEEEecCCCC----eEEEEECCCcc
Confidence 11112233333 246778888754 68999988765
|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.97 E-value=2.3 Score=42.14 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV--LKSRQEMEKKLADSLKEMELLKEKL 531 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lkek~ 531 (617)
..+.++.++-+....++.+++++.+..+..++.+.+| -|.++.|.+.+....++++.|.+++
T Consensus 50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666555 2334444444444444444433333
|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
Probab=84.95 E-value=2.3 Score=36.08 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=31.4
Q ss_pred HHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007111 477 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 535 (617)
Q Consensus 477 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e 535 (617)
.++.+...++.++.++-...+++|..+.++.+-.|.+|..|..+.......++||...+
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666665555555555555444444444444444333
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=84.93 E-value=35 Score=34.49 Aligned_cols=181 Identities=8% Similarity=-0.030 Sum_probs=89.6
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.++|+.+.+....-.. . .. -.+++. -++++++.|+. +.+.+++..+......... .
T Consensus 158 ~i~iwd~~~~~~~~~~~~----------~--~~-V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~~~~-~ 216 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIET----------R--GE-VKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIARKTD-F 216 (365)
T ss_dssp EEEEEETTTTEEEEEEEC----------S--SC-CCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEEECC-C
T ss_pred EEEEeECCCCcEEEEeCC----------C--Cc-eEEEEEccCCceEEeccc-------eeEEEEEeccCcceeeeec-C
Confidence 578888887765432210 0 11 122222 25566666543 2367777777765443311 1
Q ss_pred CCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCC
Q 007111 94 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 94 ~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~ 171 (617)
............-++..++.++.+... ...++.+|.....+...... .+......- ++++. +++ +++.|+.++
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~-~lasgs~D~- 291 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGE-LAVLASNDN- 291 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSC-EEEEEETTS-
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeee-eecCCCCCeEeEEECCCCC-ceEEEcCCC-
Confidence 111111222233477888888776542 34567777766665433110 111111111 22233 455 778888774
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECC
Q 007111 172 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
.|.+||..+.+-......+ ....-.+++.. ++++++.|+.. ..+.++|+.
T Consensus 292 ----~V~iwd~~~~~~~~~~~~g---H~~~V~~v~fSpdg~~laS~S~D-----~tvrvw~ip 342 (365)
T 4h5i_A 292 ----SIALVKLKDLSMSKIFKQA---HSFAITEVTISPDSTYVASVSAA-----NTIHIIKLP 342 (365)
T ss_dssp ----CEEEEETTTTEEEEEETTS---SSSCEEEEEECTTSCEEEEEETT-----SEEEEEECC
T ss_pred ----EEEEEECCCCcEEEEecCc---ccCCEEEEEECCCCCEEEEEeCC-----CeEEEEEcC
Confidence 4999999887644321111 01111223332 66777776654 246777764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=84.60 E-value=32 Score=37.05 Aligned_cols=140 Identities=13% Similarity=0.080 Sum_probs=74.0
Q ss_pred ceEEEEEEC--CCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC
Q 007111 72 RVSVWTFDT--ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 149 (617)
Q Consensus 72 ~~~v~~yd~--~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 149 (617)
...+|.+++ ....- .+. ..+..+ ..+....++.+++..+..+. +.+||+.+.....+.. .+.
T Consensus 89 ~~~l~~~~~~~~g~~~-~l~---~~~~~~-~~~~s~dg~~~~~~s~~~~~------~~l~d~~~g~~~~l~~---~~~-- 152 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQ-RLE---AVKPMR-ILSGVDTGEAVVFTGATEDR------VALYALDGGGLRELAR---LPG-- 152 (582)
T ss_dssp CEEEEEEETTSTTCCE-ECT---TSCSBE-EEEEEECSSCEEEEEECSSC------EEEEEEETTEEEEEEE---ESS--
T ss_pred ceEEEEEeccCCCccc-ccc---CCCCce-eeeeCCCCCeEEEEecCCCC------ceEEEccCCcEEEeec---CCC--
Confidence 457888887 44433 332 112222 22333334456666554332 3477888888777641 121
Q ss_pred cccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEE
Q 007111 150 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 228 (617)
Q Consensus 150 ~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~ 228 (617)
...+..-+++ .+++++.+... ...++++|+.++.+..+... .......+.. +++.++.+...+ ...++
T Consensus 153 -~~~~~spDG~-~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~---~~~i~ 221 (582)
T 3o4h_A 153 -FGFVSDIRGD-LIAGLGFFGGG-RVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTAGLETAR---EARLV 221 (582)
T ss_dssp -CEEEEEEETT-EEEEEEEEETT-EEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEEEEECSS---CEEEE
T ss_pred -ceEEECCCCC-EEEEEEEcCCC-CeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEEEccCCC---eeEEE
Confidence 2233334677 44544443211 13599999999998866432 1111222222 555444433222 24699
Q ss_pred EEECCCCcEE
Q 007111 229 IFDILKGEWS 238 (617)
Q Consensus 229 ~yDl~~~~W~ 238 (617)
++|+.+....
T Consensus 222 ~~d~~~~~~~ 231 (582)
T 3o4h_A 222 TVDPRDGSVE 231 (582)
T ss_dssp EECTTTCCEE
T ss_pred EEcCCCCcEE
Confidence 9999988877
|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
Probab=84.45 E-value=4.7 Score=36.63 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=70.2
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccccCCCc
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 553 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~~~~~ 553 (617)
+|+.+=......+..|+.|++-++.|+|.....-+.+.-||.+-..-...|+.|...|..+...-|+|.
T Consensus 4 ri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeead----------- 72 (147)
T 2b9c_A 4 RIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD----------- 72 (147)
T ss_dssp -------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 334444444556666778899999999988888888888888777777777777777777766666552
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhccchhhhccccccchhhHHHHHHHHhhhhc
Q 007111 554 RLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 606 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (617)
+.....--=|.-++.+|.-+-.-+-.=-++.-+|+-++..+-+.|.|||-
T Consensus 73 ---rKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 73 ---RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 22222222233334444422111111123444677778888888888873
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=83.89 E-value=35 Score=33.65 Aligned_cols=208 Identities=11% Similarity=0.004 Sum_probs=104.8
Q ss_pred eEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCC------
Q 007111 50 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGK------ 119 (617)
Q Consensus 50 hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~------ 119 (617)
++++.. +++|||.... ..+++||+.+...+.+.....-........++.. ++.||+.-.....
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 455555 5789987432 2488999887765555421110111223334443 4688886422100
Q ss_pred -----CCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCC---CcEEEe
Q 007111 120 -----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET---MIWTRI 190 (617)
Q Consensus 120 -----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t---~~W~~~ 190 (617)
......+++||+.+.....+.. .+..+ ...++. +++.|||.-.. .+.|++|++.+ ..+..+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p---~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLK--ELHVP---GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEE--EESCC---CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEecc--CCccC---cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceE
Confidence 0123569999998887665421 11111 234443 34457776332 24699999875 344444
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEecCCCC-----CccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCC
Q 007111 191 KIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK-----KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 264 (617)
Q Consensus 191 ~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~-----~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~ 264 (617)
... +. -..++.. ++.+||....... .....+++||+.......+...... + ....+.+... .
T Consensus 226 ~~~---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~-~--~~~~~~~~~~---~ 293 (322)
T 2fp8_A 226 VKI---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPF-A--GEHFEQIQEH---D 293 (322)
T ss_dssp EEC---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTT-T--TSCCCEEEEE---T
T ss_pred EeC---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCC-c--cccceEEEEe---C
Confidence 322 21 1223333 5678887532100 1124688999876555555432111 1 1122233332 4
Q ss_pred cEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 265 DFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 265 ~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.|||.+.. .+.|.+|++..+.
T Consensus 294 g~L~v~~~~----~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 294 GLLYIGTLF----HGSVGILVYDKKG 315 (322)
T ss_dssp TEEEEECSS----CSEEEEEEC----
T ss_pred CEEEEeecC----CCceEEEeccccc
Confidence 778876533 3478899886543
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=83.17 E-value=32 Score=32.68 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=83.6
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc---CCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCe
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~ 125 (617)
-+++...+.+|+|=|. .+|+++.....+...... ..+| ....++.... ++++|+|-| +.
T Consensus 27 DAi~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp-~~iDAa~~~~~~~~iyfFkG--------~~ 89 (207)
T 1pex_A 27 DAITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELP-NRIDAAYEHPSHDLIFIFRG--------RK 89 (207)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSC-SSCCEEEEETTTTEEEEEET--------TE
T ss_pred eEEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCC-CCccEEEEeccCCcEEEEcc--------CE
Confidence 4566679999999664 589998765444332221 1234 2344333332 589999855 34
Q ss_pred EEEEECCCCcE---EEeecCCCCCCC--CcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----ee-cC
Q 007111 126 LHMFDLKSLTW---LPLHCTGTGPSP--RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IK-IR 193 (617)
Q Consensus 126 v~~yD~~t~~W---~~l~~~g~~P~~--R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~-~~ 193 (617)
+|+|+-.+-.- +.+... .+|.. ... ++... ++..+|+|-|. ..|+||..+.+-.. +. .-
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~gk~yfFkG~-------~ywr~d~~~~~~d~gyPr~i~~~~ 160 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISEL-GLPKEVKKIS-AAVHFEDTGKTLLFSGN-------QVWRYDDTNHIMDKDYPRLIEEDF 160 (207)
T ss_dssp EEEESTTCCCTTCSEESTTT-TCCTTCCCCC-EEEECTTTSEEEEEETT-------EEEEEETTTTEECSSCCCBHHHHS
T ss_pred EEEEeCCeeccCCceecccc-CCCCCCcccc-EEEEeCCCCEEEEEeCC-------EEEEEeCcCccccCCCCccHHHcC
Confidence 67775332111 222111 13321 222 33333 32348999773 58999987653221 00 01
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 194 g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+-+| ..-.++...++.+|+|-| +..|+||..+.+-..
T Consensus 161 ~Gip--~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 161 PGIG--DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp TTSC--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCC--CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence 1122 222344456999999987 458999987765443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=82.95 E-value=55 Score=35.17 Aligned_cols=218 Identities=13% Similarity=0.031 Sum_probs=99.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCC----cEEEeeccCCC--CCC-cceeEEE-EECCEEEEEeecCCCCCccCeEE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEAKGDI--PVA-RSGHTVV-RASSVLILFGGEDGKRRKLNDLH 127 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~~g~~--P~~-R~~~s~~-~~~~~IYv~GG~~~~~~~~~~v~ 127 (617)
+.++||-|.. .+.+++||..++ +-.+.-....+ +.. ...|.+. .-++ |||-.--+..+.....+.
T Consensus 95 r~~l~v~~l~------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 95 RRFLIVPGLR------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp SCEEEEEBTT------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred CCEEEEccCC------CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 5567776654 257999999866 22221100001 111 1234333 3455 776432222333468899
Q ss_pred EEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEc---------cCCCC----CCCCeEEEEECCCCcEEEeecC
Q 007111 128 MFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFG---------GSSKS----KTLNDLYSLDFETMIWTRIKIR 193 (617)
Q Consensus 128 ~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~G---------G~~~~----~~~n~v~~yD~~t~~W~~~~~~ 193 (617)
++|..+++-..--..+..|. -+++-.... +.+.+|+.- |+... ...+.|..||..+++-...-..
T Consensus 168 vlD~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EECTTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEECCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99999876432211122221 222223333 344344431 22221 3568899999988643332222
Q ss_pred CCC-CCCCcceEEEEE---CCEEEEEecCCCCCccceEEEEECCCCcEEEeecC--CCC-----CC---CC----CcceE
Q 007111 194 GFH-PSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS--PSS-----SV---TS----NKGFT 255 (617)
Q Consensus 194 g~~-P~~R~~ha~v~~---~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~--~~~-----~p---~~----r~~~s 255 (617)
+.. ..|| +....+ +...|+..-.+...-.+.+++|..+...|...... +.. .| .. ....+
T Consensus 247 g~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 247 GEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp CTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred CCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 100 0111 111111 34566665422111224455544445778766532 110 01 00 11233
Q ss_pred EEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 256 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 256 ~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
.+.+.. ++.+||+.-- ..+.|.+||+..
T Consensus 325 ~I~lS~-DGrfLYVSnr----g~d~VavfdV~d 352 (462)
T 2ece_A 325 DIDISL-DDKFLYLSLW----GIGEVRQYDISN 352 (462)
T ss_dssp CEEECT-TSCEEEEEET----TTTEEEEEECSS
T ss_pred EEEECC-CCCEEEEEeC----CCCEEEEEEecC
Confidence 344443 3456665332 136899999863
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=82.69 E-value=21 Score=34.05 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=76.6
Q ss_pred EEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC---CCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCe
Q 007111 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLND 176 (617)
Q Consensus 102 s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~ 176 (617)
+++...+.+|+|=| ..+|+++.....+...... ..+|.. .. ++... +++ +|+|=|. .
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~-iyfFkG~-------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDL-IFIFRGR-------K 89 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTE-EEEEETT-------E
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCc-EEEEccC-------E
Confidence 34457899999844 3467776554433322111 234432 22 33333 355 8998774 3
Q ss_pred EEEEECCCCcE---EEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCC----C
Q 007111 177 LYSLDFETMIW---TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS----S 247 (617)
Q Consensus 177 v~~yD~~t~~W---~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~----~ 247 (617)
+|+|+-.+..- ..+...|.+..+..--++... ++++|+|-| +..|+||..+.+-. ...|-. .
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d--~gyPr~i~~~~ 160 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMD--KDYPRLIEEDF 160 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEEC--SSCCCBHHHHS
T ss_pred EEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCcccc--CCCCccHHHcC
Confidence 77776432111 112212222111112233333 489999987 46899998764311 100100 0
Q ss_pred CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 248 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 248 p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.-....-++... .+.+|+|-|. ..|+||..+.+
T Consensus 161 ~Gip~~iDaAf~~---~g~~YfFkg~------~y~rf~~~~~~ 194 (207)
T 1pex_A 161 PGIGDKVDAVYEK---NGYIYFFNGP------IQFEYSIWSNR 194 (207)
T ss_dssp TTSCSCCSEEEEE---TTEEEEEETT------EEEEEETTTTE
T ss_pred CCCCCCccEEEEc---CCcEEEEECC------EEEEEeCCccE
Confidence 0001112233322 4788988875 68999987765
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=82.28 E-value=1.5 Score=57.80 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHhchhhHhHHHHhhcHHHHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHhhhHHh----HHhhhccccc
Q 007111 478 LIRKNGILEGQLAAALVNREAAEKNFSSVL------KSRQEMEKKLADSLKEMELLKEKLAGLELA----QEEANSLSNI 547 (617)
Q Consensus 478 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~lkek~~~~e~~----qe~~~~~~~~ 547 (617)
.....+.++.|-+.+.+.+++||++|+.|. +--.++|++|+.+.++.+.++++|+.+|.. |++.+
T Consensus 1978 v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~----- 2052 (3245)
T 3vkg_A 1978 ARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA----- 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 444555666777777777888888877764 223344444444444333333333333211 11111
Q ss_pred ccCCCcchhhhHHHHHHHHHHHHHhhhhhcc---chhhhccc
Q 007111 548 VHSDNVRLEHDVAFLKAVLDDTQKELHSTRG---VLAGERAR 586 (617)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 586 (617)
.+..|-+-|++-++.+++-|..-.. .|++||.|
T Consensus 2053 ------~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~R 2088 (3245)
T 3vkg_A 2053 ------TLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGR 2088 (3245)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 1123444555555555555554433 37777776
|
| >3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=82.07 E-value=2.5 Score=41.21 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccccccc
Q 007111 470 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 549 (617)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~~~~~ 549 (617)
...+.-+.+.++.+.|+-|=. .+-....+++.|++....-.+.+-+|||++|. +|
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~--------------ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq--dE--------- 207 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKN--------------STLSEIRDIEVEVENLRQKKEKLLGKIANIEQ--NQ--------- 207 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hH---------
Confidence 344455566666666644433 33345567777777776666777777777763 22
Q ss_pred CCCcchhhhHHHHHHHHHHHHH
Q 007111 550 SDNVRLEHDVAFLKAVLDDTQK 571 (617)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~ 571 (617)
+-||||+.-++.-+++.|.
T Consensus 208 ---l~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 208 ---LLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHHHHH
Confidence 4578888777777777765
|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
Probab=82.06 E-value=2.9 Score=35.38 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=34.2
Q ss_pred HHHHHHHHhchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 007111 474 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 537 (617)
Q Consensus 474 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~ 537 (617)
+.-.++.+...+++++.++-...+++|..+.++-+=.+.++..+..+.......+.||...+.+
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556666666666666666666666555555555555544444444444444444433
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=82.02 E-value=63 Score=35.19 Aligned_cols=153 Identities=10% Similarity=0.025 Sum_probs=81.0
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCC-CCcc--cEEEEE-CCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSN--HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~--h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
++.+++.||.++ .+.+||..+.+....-....+.. +..+ .+++.. ++. .++.||.++ .+.+||+
T Consensus 201 dg~~las~s~D~------~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~-----~v~lWd~ 268 (611)
T 1nr0_A 201 DGSLFASTGGDG------TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADK-----TIKIWNV 268 (611)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTS-----EEEEEET
T ss_pred CCCEEEEEECCC------cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCC-----eEEEEeC
Confidence 567788887654 38889988776543310111100 1111 122333 445 777787764 5899999
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeec
Q 007111 183 ETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHK 262 (617)
Q Consensus 183 ~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~ 262 (617)
.+..+......+. ........+..++..++.++..+ .+..+|+......... .. ......++.+..
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~-----~i~~~~~~~~~~~~~~--~g----h~~~v~~l~~sp- 334 (611)
T 1nr0_A 269 ATLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISANG-----FINFVNPELGSIDQVR--YG----HNKAITALSSSA- 334 (611)
T ss_dssp TTTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETTC-----CEEEEETTTTEEEEEE--CC----CSSCEEEEEECT-
T ss_pred CCCceeeeecCCC--CccceeEEEEEcCCEEEEEeCCC-----cEEEEeCCCCCcceEE--cC----CCCCEEEEEEeC-
Confidence 9887765443211 11111223334666666666543 3678888766533221 10 111233344432
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 263 EKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 263 ~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++..++.|+.++ .|.++|+.+..
T Consensus 335 -dg~~l~s~s~D~----~v~~Wd~~~~~ 357 (611)
T 1nr0_A 335 -DGKTLFSADAEG----HINSWDISTGI 357 (611)
T ss_dssp -TSSEEEEEETTS----CEEEEETTTCC
T ss_pred -CCCEEEEEeCCC----cEEEEECCCCc
Confidence 344666777654 57888887654
|
| >3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} | Back alignment and structure |
|---|
Probab=81.97 E-value=10 Score=33.96 Aligned_cols=91 Identities=16% Similarity=0.284 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHH--hchhhHhHHHHhhcHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhccc
Q 007111 468 YQFYESKMAALIRK--NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 545 (617)
Q Consensus 468 ~~~~~~~~~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~qe~~~~~~ 545 (617)
-++.+.+|..+... +..+...-.+.|+.+--|..-+. .-+..++|+..+++..+|+..||+++..+...-|++
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~---- 108 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFK-AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS---- 108 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 36889999999966 89998888888888877665432 234677888999999999999999998877665553
Q ss_pred ccccCCCcchhhhHHHHHHHHHHHHHhh
Q 007111 546 NIVHSDNVRLEHDVAFLKAVLDDTQKEL 573 (617)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (617)
+.++.-|+.=+.++|+++
T Consensus 109 ----------~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 109 ----------AKEIKELKSEINKYQKNI 126 (138)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=81.20 E-value=43 Score=32.78 Aligned_cols=141 Identities=17% Similarity=0.125 Sum_probs=72.3
Q ss_pred ceEEEEEECCCCcE-EEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCC--c-cCeEEEEECCCCcEEEeecCCCCCC
Q 007111 72 RVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR--K-LNDLHMFDLKSLTWLPLHCTGTGPS 147 (617)
Q Consensus 72 ~~~v~~yd~~t~~W-~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~--~-~~~v~~yD~~t~~W~~l~~~g~~P~ 147 (617)
...++++|+.+... ..+.. + .....+...+.+++.+..+.... . ...+|.+| +.++..+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~--- 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE--K--- 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE--E---
T ss_pred cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc--C---
Confidence 35799999999887 66652 2 22233333333555554433211 2 45789999 777877741 1
Q ss_pred CCcccEEEEECCcEEEEEccCCC--CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccc
Q 007111 148 PRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 225 (617)
Q Consensus 148 ~R~~h~a~~~~~~~LyV~GG~~~--~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~ 225 (617)
.......-+++.|++.+.... ......++.+| ++.+..+... ..........+.+.+|+.+...+ ..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~~~~~~sdg~~~~~~~~~---~~ 285 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE----VDRGVGQAKIKDGKVYFTLFEEG---SV 285 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT----CCSEEEEEEEETTEEEEEEEETT---EE
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc----CCcccCCccEEcCcEEEEEecCC---cE
Confidence 112222446664544443221 22346799999 6677665432 11222221223244666655433 24
Q ss_pred eEEEEECCCCcEEEe
Q 007111 226 ETLIFDILKGEWSVA 240 (617)
Q Consensus 226 ~v~~yDl~~~~W~~l 240 (617)
.+| ++ +.....+
T Consensus 286 ~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 286 NLY-IW--DGEIKPI 297 (347)
T ss_dssp EEE-EE--SSSEEEE
T ss_pred EEE-Ec--CCceEEE
Confidence 577 77 3444443
|
| >2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic} | Back alignment and structure |
|---|
Probab=80.84 E-value=1.1 Score=28.77 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=18.9
Q ss_pred chhhhHHHHHHHHHHHHHhhh
Q 007111 554 RLEHDVAFLKAVLDDTQKELH 574 (617)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~ 574 (617)
|||.||.-|.+|..++||-|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~d 23 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLD 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=80.77 E-value=54 Score=33.64 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=61.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCC---CCCccCeEEEEEC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDG---KRRKLNDLHMFDL 131 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~---~~~~~~~v~~yD~ 131 (617)
+..+|+.-+.... ....+++||+.+.+-. . .+|.....+.+.. .+..+|+..-... .+...+.+.+||+
T Consensus 32 ~~~~yv~~~~~~~--~~~~v~v~D~~t~~~~--~---~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 32 GRRSYINLPAHHS--AIIQQWVLDAGSGSIL--G---HVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCEEEEeCCcccC--CccEEEEEECCCCeEE--E---EecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 4568887541111 1117999999887643 2 2333333322222 3457888753211 1223577999999
Q ss_pred CCCcE-EEeecCCC-CC-CCCcccEEEE-ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE
Q 007111 132 KSLTW-LPLHCTGT-GP-SPRSNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 189 (617)
Q Consensus 132 ~t~~W-~~l~~~g~-~P-~~R~~h~a~~-~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~ 189 (617)
.+.+- ..++..+. .+ ....-+..++ -+++++|+..-.. .+.|.++| .+++-..
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~----~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA----GPAVGLVV-QGGSSDD 161 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC----CCeEEEEE-CCCCEEe
Confidence 87653 23321100 00 0011112233 3566678764221 25699999 8876543
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=80.31 E-value=67 Score=34.45 Aligned_cols=101 Identities=18% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCc--E-EEeecc-CCCCCCcceeEEEE-----ECCEEEEEeecCCCCCccCeE
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--W-SVVEAK-GDIPVARSGHTVVR-----ASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~~~-g~~P~~R~~~s~~~-----~~~~IYv~GG~~~~~~~~~~v 126 (617)
.+++|+|=|. .+|+|+-..-. + +.+... ..+| ....++... .++.+|+|-| +..
T Consensus 107 ~g~~yfFkG~--------~yW~~~~~~~~~GYPk~I~~~fpGlp-~~IDAA~~~~~~~~~~~~~yfFkG--------~~y 169 (460)
T 1qhu_A 107 HTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIP-FPLDAAVECHRGECQDEGILFFQG--------NRK 169 (460)
T ss_dssp TTEEEEEETT--------EEEEECC-------CEEHHHHSTTCC-SSCCEEEEECBBTBSSSEEEEEET--------TEE
T ss_pred CCcEEEEecc--------EEEEEeCCcccCCCCeEhhhccCCCC-CCeeEEEECCccCCCCCeEEEEec--------ccE
Confidence 5899999774 58888643211 0 112111 1233 233433322 2578888865 357
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 127 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 127 ~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
|+||..+.+...-. -..+|. . -++....++ +|+|-|. ..|+||..+.
T Consensus 170 w~yd~~~~~~~~~~-w~gi~~--i-DAA~~~~g~-~YfFkG~-------~y~rfd~~~~ 216 (460)
T 1qhu_A 170 WFWDLTTGTKKERS-WPAVGN--C-TSALRWLGR-YYCFQGN-------QFLRFNPVSG 216 (460)
T ss_dssp EEEETTTTEEEEEC-CTTSCC--C-SEEEEETTE-EEEEETT-------EEEEECTTTC
T ss_pred EEEecccceeeccc-CCCCCc--c-chheeeCCc-eEEEECC-------EEEEEcCccC
Confidence 99999887665321 112332 2 344445666 8999885 4788887654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=80.03 E-value=47 Score=32.50 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=76.4
Q ss_pred ceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCC----------------CC-----CccCeEEEE
Q 007111 72 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDG----------------KR-----RKLNDLHMF 129 (617)
Q Consensus 72 ~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~----------------~~-----~~~~~v~~y 129 (617)
...+|++|+.+.....+.. .+. ....... +++.++++.... .+ .....++++
T Consensus 84 ~~~l~~~~~~~g~~~~l~~---~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILE---AKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE---ESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred cceEEEEECCCCceEEEEc---CCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence 3579999999888766652 222 2222222 444333433210 00 113679999
Q ss_pred ECCCCcE-EEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC---C-CCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 007111 130 DLKSLTW-LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---T-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 204 (617)
Q Consensus 130 D~~t~~W-~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~---~-~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha 204 (617)
|+.+... ..+.. + .....+...+. +++.+..+... . ...+|.+| ++.+..+... .. ...
T Consensus 158 d~~~~~~~~~l~~----~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----~~-~~~ 221 (347)
T 2gop_A 158 DTESEEVIEEFEK----P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-----VS-FYA 221 (347)
T ss_dssp ETTTTEEEEEEEE----E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----ES-EEE
T ss_pred ECCCCeEEeeecC----C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-----cc-eee
Confidence 9999887 66642 2 22344455666 65555443221 2 45799999 7777766431 11 122
Q ss_pred EEEECCE-EEEEecCCC--CCccceEEEEECCCCcEEEee
Q 007111 205 GVLCGTK-WYIAGGGSR--KKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 205 ~v~~~~~-IyI~GG~s~--~~~~~~v~~yDl~~~~W~~l~ 241 (617)
. .-+++ |++.+.... ......+|.+| +..+..+.
T Consensus 222 ~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 222 V-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp E-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred E-CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 2 33444 544443221 11245799999 56666553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 617 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-12 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-10 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 5e-10 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 5e-08 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 6e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 6e-04 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (159), Expect = 1e-12
Identities = 39/286 (13%), Positives = 65/286 (22%), Gaps = 67/286 (23%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISWGKKV 59
+ GG L ++ N +W + + R G + G +
Sbjct: 7 IYTAGGYFRQSL-SYLEAYNPSNGTWLRLAD------------LQVPRSGLAGCVVGGLL 53
Query: 60 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFG----- 114
VGG+ +S D + + V R+ V + G
Sbjct: 54 YAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC 113
Query: 115 -----------------------------------------GEDGKRRKLNDLHMFDLKS 133
G +LN + +
Sbjct: 114 IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPER 173
Query: 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 193
W + T S + GG LN + D ET WT +
Sbjct: 174 NEWRMITAMNTIRSGAGVC----VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA-- 227
Query: 194 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239
R+ + + Y+ GG +D WS
Sbjct: 228 -PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 272
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (143), Expect = 2e-10
Identities = 39/292 (13%), Positives = 71/292 (24%), Gaps = 64/292 (21%)
Query: 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG 115
G+ + GG + ++ W + D+ V RSG +L GG
Sbjct: 4 GRLIYTAGGYFRQSLS--YLEAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVGG 58
Query: 116 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLL------------ 163
+ D D + PR+ + D
Sbjct: 59 RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS 118
Query: 164 ----------------------------------IFGGSSKSKTLNDLYSLDFETMIWTR 189
GG + LN E W
Sbjct: 119 VERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM 178
Query: 190 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 249
I + R+G + Y AGG + + +D+ + T +
Sbjct: 179 IT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV----ETETWTFVAPMKH 231
Query: 250 SNKGFTLVLVQHKEKDFLVAFGGIK-KEPSNQVEVLSIEKNE-SSMGRRSTP 299
+ + Q + + GG + VE + + S + R ++
Sbjct: 232 RRSALGITVHQGR----IYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSG 279
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (139), Expect = 5e-10
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 11/145 (7%)
Query: 62 VGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR 121
G D + S + E W ++ + RSG V + + GG DG+ +
Sbjct: 153 AVGGFDGTNRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 209
Query: 122 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD 181
LN + +D+++ TW RS ++ + + + GG L+ + D
Sbjct: 210 -LNSVERYDVETETW---TFVAPMKHRRSALGITVHQGR-IYVLGGYDGHTFLDSVECYD 264
Query: 182 FETMIWTRIKIRGFHPSPRAGCCGV 206
+T W+ + S R+G
Sbjct: 265 PDTDTWSEV---TRMTSGRSGVGVA 286
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (124), Expect = 5e-08
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVL 60
+ GG G L+ V+ + + +WT + + + ++
Sbjct: 198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-----------RRSALGITVHQGRIY 246
Query: 61 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 104
++GG D + SV +D +T+ WS V + RSG V
Sbjct: 247 VLGG-YDGHTFLDSVECYDPDTDTWSEV---TRMTSGRSGVGVA 286
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 46.3 bits (108), Expect = 6e-06
Identities = 19/158 (12%), Positives = 42/158 (26%), Gaps = 14/158 (8%)
Query: 85 WSVVEAKGDIPVARSGHTVVRASSVLILFGGED-----GKRRKLNDLHMFDLKSLTWLPL 139
W D+P+ + + S ++++ G + +D +
Sbjct: 11 WGPT---IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR 67
Query: 140 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 199
T T ++ + +++ GG+ KT D + W
Sbjct: 68 TVTVT-KHDMFCPGISMDGNGQIVVTGGNDAKKT----SLYDSSSDSWIPGPDMQVARG- 121
Query: 200 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237
+ G + I G S ++ W
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 18/181 (9%), Positives = 37/181 (20%), Gaps = 18/181 (9%)
Query: 11 GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS 70
+A + C + K +L G +
Sbjct: 200 PSTAMNWYYTSGSGDVKSAGK---RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 256
Query: 71 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSV------LILFGGEDGKRRK-- 122
D + T +SV + GG+
Sbjct: 257 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 316
Query: 123 ---LNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLY 178
+ ++ + T+ R H ++ L D + GG + +
Sbjct: 317 STPVFTPEIYVPEQDTFYKQ---NPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHF 373
Query: 179 S 179
Sbjct: 374 D 374
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 617 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.97 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.94 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.15 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.99 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.63 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.38 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.37 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.21 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 95.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 95.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 95.61 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.37 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.29 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.23 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 95.11 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 94.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 94.24 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 94.24 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 93.78 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 93.72 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.38 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 93.3 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 92.91 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 92.89 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.58 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 92.53 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 92.13 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 91.84 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.54 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 91.18 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 90.49 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 90.47 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 90.24 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 89.0 | |
| d1v0ea1 | 516 | Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 | 87.7 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 87.08 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 86.67 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 85.45 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 85.41 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 83.43 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 83.43 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 83.27 | |
| d1seta1 | 110 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 82.19 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 81.81 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 81.41 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 81.2 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 81.11 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 80.6 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-36 Score=307.56 Aligned_cols=263 Identities=18% Similarity=0.248 Sum_probs=231.6
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCC---CCCceEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS---GSDRVSVWT 77 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~---~~~~~~v~~ 77 (617)
||||||... ..++++++||+.+++|+.+++ +|. +|.+|++++++++||||||.... ....+++|+
T Consensus 7 iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~----------~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 74 (288)
T d1zgka1 7 IYTAGGYFR-QSLSYLEAYNPSNGTWLRLAD----------LQV-PRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 74 (288)
T ss_dssp EEEECCBSS-SBCCCEEEEETTTTEEEECCC----------CSS-CCBSCEEEEETTEEEEECCEEEETTEEEECCCEEE
T ss_pred EEEECCcCC-CCCceEEEEECCCCeEEECCC----------CCC-ccceeEEEEECCEEEEEeCcccCCCCccccchhhh
Confidence 689999864 578999999999999999986 444 46789999999999999997432 234568999
Q ss_pred EECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 78 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 78 yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
||+.+++|..++ ++|.+|++|+++.+++++|++||..... .+++++.||+.++.|.... .+|.+|++|+++.+
T Consensus 75 yd~~~~~w~~~~---~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~ 147 (288)
T d1zgka1 75 YNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVL 147 (288)
T ss_dssp EETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE
T ss_pred cccccccccccc---cccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccc---ccccccccceeeee
Confidence 999999999998 7999999999999999999999987753 6889999999999999874 78889999999999
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
.+. +|++||.......++++.||+.+++|...... +.++..++++..+++||++||.......++.+.||+.+++|
T Consensus 148 ~~~-~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 223 (288)
T d1zgka1 148 NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 223 (288)
T ss_dssp TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred eec-ceEecCcccccccceEEEeecccccccccccc---ccccccccccceeeeEEEecCccccccccceeeeeecceee
Confidence 888 99999998888888999999999999988664 77888999999999999999998888889999999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCC-CCeEEEEECCCCccccc
Q 007111 238 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 294 (617)
Q Consensus 238 ~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~-~~dV~vyd~~~~~W~~~ 294 (617)
..++ ..|.+|.+|++++++ ++||||||.++.. .+++|+||+++++|+..
T Consensus 224 ~~~~----~~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 273 (288)
T d1zgka1 224 TFVA----PMKHRRSALGITVHQ----GRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 273 (288)
T ss_dssp EECC----CCSSCCBSCEEEEET----TEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred eccc----CccCcccceEEEEEC----CEEEEEecCCCCeecceEEEEECCCCEEEEC
Confidence 9986 346789999999886 8899999987654 78999999999998554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.2e-30 Score=257.00 Aligned_cols=231 Identities=19% Similarity=0.277 Sum_probs=203.8
Q ss_pred CEEEecCCC----CCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEE
Q 007111 1 MIVVGGESG----NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 76 (617)
Q Consensus 1 i~V~GG~~~----~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~ 76 (617)
|||+||... ...++++++||+.+++|..+++ ++ .+|..|+++.+++++|++||.. .....+.++
T Consensus 53 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~----------~p-~~r~~~~~~~~~~~i~~~gg~~-~~~~~~~~~ 120 (288)
T d1zgka1 53 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP----------MS-VPRNRIGVGVIDGHIYAVGGSH-GCIHHNSVE 120 (288)
T ss_dssp EEEECCEEEETTEEEECCCEEEEETTTTEEEECCC----------CS-SCCBTCEEEEETTEEEEECCEE-TTEECCCEE
T ss_pred EEEEeCcccCCCCccccchhhhccccccccccccc----------cc-ceecceeccccceeeEEeccee-cccccceee
Confidence 689999642 2356899999999999999886 33 4577899999999999999984 344567899
Q ss_pred EEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEE
Q 007111 77 TFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 156 (617)
Q Consensus 77 ~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~ 156 (617)
.||+.++.|...+ .+|..|.+|+++...+.+|++||.+... ..++++.||+.+++|.... ..+.++..++++.
T Consensus 121 ~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~GG~~~~~-~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~ 193 (288)
T d1zgka1 121 RYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMIT---AMNTIRSGAGVCV 193 (288)
T ss_dssp EEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEE
T ss_pred eeccccCcccccc---ccccccccceeeeeeecceEecCccccc-ccceEEEeecccccccccc---ccccccccccccc
Confidence 9999999999887 7889999999999999999999997764 5788999999999999884 6788899999999
Q ss_pred ECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCc
Q 007111 157 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 157 ~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~ 236 (617)
+++. ++++||.+.....++.+.||+.+++|+.+... |.+|.+|+++.++++|||+||.+....++++++||+.+++
T Consensus 194 ~~~~-i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 194 LHNC-IYAAGGYDGQDQLNSVERYDVETETWTFVAPM---KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp ETTE-EEEECCBCSSSBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeee-EEEecCccccccccceeeeeecceeeecccCc---cCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 9998 99999999888899999999999999998764 8899999999999999999999888888999999999999
Q ss_pred EEEeecCCCCCCCCCcceEEEE
Q 007111 237 WSVAITSPSSSVTSNKGFTLVL 258 (617)
Q Consensus 237 W~~l~~~~~~~p~~r~~~s~v~ 258 (617)
|+.+. ..|.+|.+|++++
T Consensus 270 W~~~~----~~p~~R~~~~~~~ 287 (288)
T d1zgka1 270 WSEVT----RMTSGRSGVGVAV 287 (288)
T ss_dssp EEEEE----ECSSCCBSCEEEE
T ss_pred EEECC----CCCCCcEeEEEEE
Confidence 99997 4467899998765
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.94 E-value=6.5e-27 Score=244.84 Aligned_cols=284 Identities=12% Similarity=0.062 Sum_probs=194.1
Q ss_pred CEEEecCCCC------CccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEcccCCCCCCce
Q 007111 1 MIVVGGESGN------GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRV 73 (617)
Q Consensus 1 i~V~GG~~~~------~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~-~g~~lyV~GG~~~~~~~~~ 73 (617)
||||||.... ..+..+++||+.+++|..++.+. ....+..++.+. .+++||++||... +
T Consensus 33 v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------~~~~~~~~~~~~~~~g~i~v~Gg~~~-----~ 98 (387)
T d1k3ia3 33 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------TKHDMFCPGISMDGNGQIVVTGGNDA-----K 98 (387)
T ss_dssp EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------CSCCCSSCEEEECTTSCEEEECSSST-----T
T ss_pred EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC---------CCcccceeEEEEecCCcEEEeecCCC-----c
Confidence 6899997543 23446899999999998776531 112233344444 3679999998742 4
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
++++||+.+++|...+ ++|.+|.+|+++.+ +++||++||....+..++++++||+.+++|+.++.....+.....+
T Consensus 99 ~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 175 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK 175 (387)
T ss_dssp CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred ceeEecCccCcccccc---cccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccc
Confidence 6899999999999988 89999999999887 5799999999887778999999999999999985321111111111
Q ss_pred EE-----------EEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCC----CCCCCCcceEEEEE--CCEEEEE
Q 007111 153 VA-----------ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG----FHPSPRAGCCGVLC--GTKWYIA 215 (617)
Q Consensus 153 ~a-----------~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g----~~P~~R~~ha~v~~--~~~IyI~ 215 (617)
.. ...+++ ++++||. ...++.||+.+..|......+ ..+.++.++++... ++++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~G~-~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~ 249 (387)
T d1k3ia3 176 QGLYRSDNHAWLFGWKKGS-VFQAGPS-----TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 249 (387)
T ss_dssp TGGGTTTCSCCEEECGGGC-EEECCSS-----SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred cceeeccceeEEEEeCCCC-EEEecCc-----CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEE
Confidence 11 111333 5665554 357899999999999875432 12344555555443 7999999
Q ss_pred ecCCCCCc---cceEEEEE-----CCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCC-------CCCCe
Q 007111 216 GGGSRKKR---HAETLIFD-----ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQ 280 (617)
Q Consensus 216 GG~s~~~~---~~~v~~yD-----l~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~-------~~~~d 280 (617)
||...... ......++ .....|..+. .+|.+|.+|+++++. +++|||+||... ...+.
T Consensus 250 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~r~~~~~~~~~---dg~i~v~GG~~~~~~~~~~~~~~~ 322 (387)
T d1k3ia3 250 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN----GLYFARTFHTSVVLP---DGSTFITGGQRRGIPFEDSTPVFT 322 (387)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT----CCSSCCBSCEEEECT---TSCEEEECCBSBCCTTCCCSBCCC
T ss_pred EeccCCCCCcccceeecccccccccCCCceeecc----ccccccccceeeecc---CCeEEEECCcccCccCCCCcEece
Confidence 99754321 12223333 2334555543 567789999998885 467999999742 22567
Q ss_pred EEEEECCCCcccc--------ccccccC-ccCCceeeeccCCC
Q 007111 281 VEVLSIEKNESSM--------GRRSTPN-AKGPGQLLFEKRSS 314 (617)
Q Consensus 281 V~vyd~~~~~W~~--------~w~~~~~-~~~~~v~vfGG~~~ 314 (617)
+++||+++++|+. ..|+++. ..+++|++|||...
T Consensus 323 ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~ 365 (387)
T d1k3ia3 323 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC 365 (387)
T ss_dssp CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred EEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCc
Confidence 9999999999944 3455443 34779999999744
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.90 E-value=8.8e-24 Score=220.76 Aligned_cols=256 Identities=13% Similarity=0.132 Sum_probs=174.3
Q ss_pred CEEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEE
Q 007111 1 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 1 i~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
||++||.+ .+++.+||+.+++|..++. ++. +|..|+++.+ +++||++||........+++++||
T Consensus 89 i~v~Gg~~----~~~~~~yd~~~~~w~~~~~----------~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd 153 (387)
T d1k3ia3 89 IVVTGGND----AKKTSLYDSSSDSWIPGPD----------MQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 153 (387)
T ss_dssp EEEECSSS----TTCEEEEEGGGTEEEECCC----------CSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred EEEeecCC----CcceeEecCccCccccccc----------ccc-cccccceeeecCCceeeeccccccccccceeeeec
Confidence 46677654 3579999999999999876 344 4556777766 679999999877777788999999
Q ss_pred CCCCcEEEeeccCCCCCCcce-----------eEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC----CC
Q 007111 80 TETECWSVVEAKGDIPVARSG-----------HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT----GT 144 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~-----------~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~----g~ 144 (617)
+.+++|..++.....+..... +.....++++|++|| ....++.||+.+..|...... ..
T Consensus 154 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (387)
T d1k3ia3 154 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP------STAMNWYYTSGSGDVKSAGKRQSNRGV 227 (387)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCS------SSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecC------cCCcEEecCcccCcEeeccccccCccc
Confidence 999999998743211111111 111112345555544 345789999999999876321 22
Q ss_pred CCCCCcccEEEEE--CCcEEEEEccCCCCC---CCCeEEEEE-----CCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 007111 145 GPSPRSNHVAALY--DDKNLLIFGGSSKSK---TLNDLYSLD-----FETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 213 (617)
Q Consensus 145 ~P~~R~~h~a~~~--~~~~LyV~GG~~~~~---~~n~v~~yD-----~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~Iy 213 (617)
.+.+++++++... +++ +|++||..... .......++ .....|+.+.. +|.+|..|+++.+ +++||
T Consensus 228 ~~~~~~~~~~~~~~~~g~-v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~~~~~~~dg~i~ 303 (387)
T d1k3ia3 228 APDAMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG---LYFARTFHTSVVLPDGSTF 303 (387)
T ss_dssp CCCCBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC---CSSCCBSCEEEECTTSCEE
T ss_pred CcccccccEEEeeccCCc-eEEEEeccCCCCCcccceeecccccccccCCCceeeccc---cccccccceeeeccCCeEE
Confidence 3445555555443 455 99999975322 122233333 23445655544 4899999999888 77999
Q ss_pred EEecCCC------CCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC-CC---CCCeEEE
Q 007111 214 IAGGGSR------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK-KE---PSNQVEV 283 (617)
Q Consensus 214 I~GG~s~------~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~-~~---~~~dV~v 283 (617)
|+||... ......+++||+.+++|+.++ .++.+|.+|+++++.. +++|||+||.. +. ...+|++
T Consensus 304 v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~----~~~~~R~~Hs~a~l~~--dG~v~v~GG~~~~~~~~~~~~~e~ 377 (387)
T d1k3ia3 304 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN----PNSIVRVYHSISLLLP--DGRVFNGGGGLCGDCTTNHFDAQI 377 (387)
T ss_dssp EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC----CCSSCCCTTEEEEECT--TSCEEEEECCCCTTCSCCCCEEEE
T ss_pred EECCcccCccCCCCcEeceEEEEECCCCeEEECC----CCCCcccceEEEEECC--CCEEEEEeCCCcCCCCcccceEEE
Confidence 9999643 234557899999999999986 3567899999887742 36799999953 22 2678999
Q ss_pred EECC
Q 007111 284 LSIE 287 (617)
Q Consensus 284 yd~~ 287 (617)
|+|.
T Consensus 378 y~Pp 381 (387)
T d1k3ia3 378 FTPN 381 (387)
T ss_dssp EECG
T ss_pred Ecch
Confidence 9973
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.1 Score=48.65 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=89.4
Q ss_pred EEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 103 VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 103 ~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
....++..++.|+.++ .+.+||+.+.+-..... +. ...-.++...+. +++.|+.++ .+..||.
T Consensus 182 ~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~-~~----~~~v~~~~~~~~-~l~s~s~d~-----~i~iwd~ 244 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT-GH----QSLTSGMELKDN-ILVSGNADS-----TVKIWDI 244 (342)
T ss_dssp EEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC-CC----CSCEEEEEEETT-EEEEEETTS-----CEEEEET
T ss_pred cccCCCCEEEEEeCCC------eEEEeecccceeeeEec-cc----ccceeEEecCCC-EEEEEcCCC-----EEEEEec
Confidence 4445666777777654 38899988776443321 11 111233445666 677777764 4899998
Q ss_pred CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE-eecCCCCCCCCCcceEEEEEee
Q 007111 183 ETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKGFTLVLVQH 261 (617)
Q Consensus 183 ~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~-l~~~~~~~p~~r~~~s~v~v~~ 261 (617)
........... .............++.+++.||.. ..+.+||+.+.+... +..... .........+.+.
T Consensus 245 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~~~--~~~~~~v~~v~~s- 314 (342)
T d2ovrb2 245 KTGQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFIRNLVTLES--GGSGGVVWRIRAS- 314 (342)
T ss_dssp TTCCEEEEECS--TTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEEECTT--GGGTCEEEEEEEC-
T ss_pred ccccccccccc--cceeeeceeecccCCCeeEEEcCC-----CEEEEEECCCCCEEEEEecccC--CCCCCCEEEEEEC-
Confidence 77665443322 112222333444566777777754 358899998876432 221111 1111112233333
Q ss_pred cCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 262 KEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 262 ~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
..+.+++.|+.+|.....++++|.+.
T Consensus 315 -~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 315 -NTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp -SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 34678888988876566788888754
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.12 Score=48.06 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=83.8
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
....++..++.|+.+. .+..||+.+..-..... .. .....+....+.+++.|+.++ .+.+||.
T Consensus 182 ~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~---~~--~~~v~~~~~~~~~l~s~s~d~------~i~iwd~ 244 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT---GH--QSLTSGMELKDNILVSGNADS------TVKIWDI 244 (342)
T ss_dssp EEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC---CC--CSCEEEEEEETTEEEEEETTS------CEEEEET
T ss_pred cccCCCCEEEEEeCCC------eEEEeecccceeeeEec---cc--ccceeEEecCCCEEEEEcCCC------EEEEEec
Confidence 3445666677776532 48888988776433321 11 111223334445666676543 4889998
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEe-ecCCCCCCCCcceEEEEECC
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGT 210 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~-~~~g~~P~~R~~ha~v~~~~ 210 (617)
...+....-. ..........+...++. +++.||.++ .|.+||+.+++.... ...........-.+++..++
T Consensus 245 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~s~s~Dg-----~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~ 316 (342)
T d2ovrb2 245 KTGQCLQTLQ--GPNKHQSAVTCLQFNKN-FVITSSDDG-----TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316 (342)
T ss_dssp TTCCEEEEEC--STTSCSSCEEEEEECSS-EEEEEETTS-----EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred cccccccccc--ccceeeeceeecccCCC-eeEEEcCCC-----EEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence 8776443321 11222233344455667 777887764 499999998876432 22110011111123333355
Q ss_pred EEEEEecCCCCCccceEEEEECCCC
Q 007111 211 KWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 211 ~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
..+++.|..++.....++++|++.+
T Consensus 317 ~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 317 KLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 5444444443434456888887653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.63 E-value=0.28 Score=46.87 Aligned_cols=198 Identities=10% Similarity=0.029 Sum_probs=98.6
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++++++.|+.+. .+.+||+.+......... ....... .+++. -++.+++.+|.+.. ..+.+++..+.
T Consensus 69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~~-~~~~~~v-~~v~~s~d~~~l~~~~~~~~----~~~~v~~~~~~ 136 (311)
T d1nr0a1 69 SGYYCASGDVHG------NVRIWDTTQTTHILKTTI-PVFSGPV-KDISWDSESKRIAAVGEGRE----RFGHVFLFDTG 136 (311)
T ss_dssp TSSEEEEEETTS------EEEEEESSSTTCCEEEEE-ECSSSCE-EEEEECTTSCEEEEEECCSS----CSEEEEETTTC
T ss_pred CCCeEeccccCc------eEeeeeeecccccccccc-ccccCcc-cccccccccccccccccccc----ccccccccccc
Confidence 567777887632 588888887764322110 0111111 12222 24566666664333 23566776655
Q ss_pred cEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
+-.. .+......-.++.+ ++.++++.|+.++ .+..||..+......... ....-.++... ++.
T Consensus 137 ~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d~-----~i~i~d~~~~~~~~~~~~----~~~~i~~v~~~p~~~ 202 (311)
T d1nr0a1 137 TSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDDN-----TVAIFEGPPFKFKSTFGE----HTKFVHSVRYNPDGS 202 (311)
T ss_dssp CBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETTS-----CEEEEETTTBEEEEEECC----CSSCEEEEEECTTSS
T ss_pred cccc-----cccccccccccccccccceeeeccccccc-----cccccccccccccccccc----ccccccccccCcccc
Confidence 4321 11111111122223 3454677787764 388999987665443321 11112233333 556
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCC-CcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS-NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~-r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+++.|+..+ .+.+||..+..-...-........+ .....++.+.. ++.+++.||.++ .|.+||+.+.+
T Consensus 203 ~l~~~~~d~-----~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~l~tgs~Dg----~v~iwd~~t~~ 271 (311)
T d1nr0a1 203 LFASTGGDG-----TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADK----TIKIWNVATLK 271 (311)
T ss_dssp EEEEEETTS-----CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTTE
T ss_pred ccccccccc-----cccccccccccccccccccccccccccccccccccCC--CCCEEEEEeCCC----eEEEEECCCCc
Confidence 666676543 3788998776543322111111111 11233444432 234667787654 68899988765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.38 E-value=0.37 Score=46.17 Aligned_cols=210 Identities=13% Similarity=0.029 Sum_probs=108.1
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC-
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG- 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g- 92 (617)
..+++||+.++.-..... |...+..+..-++.+++... +.+++||+.+.+++.+....
T Consensus 40 ~~I~r~d~~~g~~~~~~~-------------~~~~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 40 RELHELHLASGRKTVHAL-------------PFMGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp TEEEEEETTTTEEEEEEC-------------SSCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSST
T ss_pred CEEEEEECCCCeEEEEEC-------------CCCcEEEEEecCCCEEEEEe--------CccEEeecccceeeEEeeeec
Confidence 468888888876544332 12222222334677776532 25999999999998876321
Q ss_pred CCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCC
Q 007111 93 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 93 ~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~ 171 (617)
..+..|.....+--++.||+--..... .......|....++.+.+.. .+. ... ..+.. +++.+|+..-.
T Consensus 99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~--~~~--~~N-g~~~s~d~~~l~~~dt~--- 168 (295)
T d2ghsa1 99 DLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA--DIS--IPN-SICFSPDGTTGYFVDTK--- 168 (295)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE--EES--SEE-EEEECTTSCEEEEEETT---
T ss_pred CCCcccceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEee--ccC--Ccc-eeeecCCCceEEEeecc---
Confidence 122233333333335777775433222 22334455555666666531 111 111 22332 34446665432
Q ss_pred CCCCeEEEEECCCC-------cEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeec
Q 007111 172 KTLNDLYSLDFETM-------IWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 242 (617)
Q Consensus 172 ~~~n~v~~yD~~t~-------~W~~~~~~g~~P~~R~~-ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~ 242 (617)
.+.|++|++... .+..+... ..... ..++.. ++.||+..-.. ..+++||++......+..
T Consensus 169 --~~~I~~~~~d~~~~~~~~~~~~~~~~~----~~~g~pdG~~vD~~GnlWva~~~~-----g~V~~~dp~G~~~~~i~l 237 (295)
T d2ghsa1 169 --VNRLMRVPLDARTGLPTGKAEVFIDST----GIKGGMDGSVCDAEGHIWNARWGE-----GAVDRYDTDGNHIARYEV 237 (295)
T ss_dssp --TCEEEEEEBCTTTCCBSSCCEEEEECT----TSSSEEEEEEECTTSCEEEEEETT-----TEEEEECTTCCEEEEEEC
T ss_pred --cceeeEeeecccccccccceEEEeccC----cccccccceEEcCCCCEEeeeeCC-----CceEEecCCCcEeeEecC
Confidence 346888886421 12212211 11112 234443 67888873111 358999998888877753
Q ss_pred CCCCCCCCCcceEEEEEeecCCcEEEEEcC
Q 007111 243 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 272 (617)
Q Consensus 243 ~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG 272 (617)
|.. ..++++++..+.+.|||.-.
T Consensus 238 -----P~~--~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 238 -----PGK--QTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp -----SCS--BEEEEEEESTTSCEEEEEEB
T ss_pred -----CCC--ceEEEEEeCCCCCEEEEEEC
Confidence 112 24555555445566666543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.37 E-value=0.21 Score=47.76 Aligned_cols=107 Identities=9% Similarity=0.059 Sum_probs=57.5
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
..+++.|+.++ .+.+||..+.+-..... . . ...-.++... ++. +++.|+.++ .+..||..++.
T Consensus 159 ~~~l~sgs~d~------~i~i~d~~~~~~~~~~~--~-~-~~~i~~v~~~p~~~-~l~~~~~d~-----~v~~~d~~~~~ 222 (311)
T d1nr0a1 159 PFRIISGSDDN------TVAIFEGPPFKFKSTFG--E-H-TKFVHSVRYNPDGS-LFASTGGDG-----TIVLYNGVDGT 222 (311)
T ss_dssp SCEEEEEETTS------CEEEEETTTBEEEEEEC--C-C-SSCEEEEEECTTSS-EEEEEETTS-----CEEEEETTTCC
T ss_pred eeeeccccccc------ccccccccccccccccc--c-c-cccccccccCcccc-ccccccccc-----ccccccccccc
Confidence 34566676544 37889998776444321 1 1 1111122333 445 677777664 38899987765
Q ss_pred EEEeecCCCCCCCCcc-----eEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcE
Q 007111 187 WTRIKIRGFHPSPRAG-----CCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEW 237 (617)
Q Consensus 187 W~~~~~~g~~P~~R~~-----ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W 237 (617)
-...-.. ......+ .+++.. ++..++.||..+ .+.+||+.+.+-
T Consensus 223 ~~~~~~~--~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-----~v~iwd~~t~~~ 272 (311)
T d1nr0a1 223 KTGVFED--DSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKV 272 (311)
T ss_dssp EEEECBC--TTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred ccccccc--cccccccccccccccccCCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 4432221 1111111 122322 566777777543 488999988764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.21 E-value=0.26 Score=47.96 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=73.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||..++++..+... ......-.+++.. +++.++.||.+. .+.+||+.++.|.....
T Consensus 30 ~i~iw~~~~~~~~~~~~l----------~gH~~~V~~l~fsp~~~~l~s~s~D~------~i~vWd~~~~~~~~~~~--- 90 (371)
T d1k8kc_ 30 EVHIYEKSGNKWVQVHEL----------KEHNGQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPTLV--- 90 (371)
T ss_dssp EEEEEEEETTEEEEEEEE----------ECCSSCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEEEE---
T ss_pred EEEEEECCCCCEEEEEEe----------cCCCCCEEEEEECCCCCEEEEEECCC------eEEEEeecccccccccc---
Confidence 588999988888766541 1111111233322 455666666531 47778888888886652
Q ss_pred CCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCC
Q 007111 94 IPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSS 169 (617)
Q Consensus 94 ~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~ 169 (617)
.........++.+ ++..++.|+.++. -.+|.++.....|..... ....+..-.++.+ ++. +++.|+.+
T Consensus 91 ~~~~~~~v~~i~~~p~~~~l~~~s~d~~----i~i~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~-~l~s~s~D 162 (371)
T d1k8kc_ 91 ILRINRAARCVRWAPNEKKFAVGSGSRV----ISICYFEQENDWWVCKHI---KKPIRSTVLSLDWHPNSV-LLAAGSCD 162 (371)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEETTSS----EEEEEEETTTTEEEEEEE---CTTCCSCEEEEEECTTSS-EEEEEETT
T ss_pred cccccccccccccccccccceeecccCc----ceeeeeeccccccccccc---cccccccccccccccccc-ceeccccC
Confidence 2222222233333 4566666665432 346666666666654431 1111222222333 344 66777776
Q ss_pred CCCCCCeEEEEECCCC
Q 007111 170 KSKTLNDLYSLDFETM 185 (617)
Q Consensus 170 ~~~~~n~v~~yD~~t~ 185 (617)
+. +..||....
T Consensus 163 ~~-----v~v~~~~~~ 173 (371)
T d1k8kc_ 163 FK-----CRIFSAYIK 173 (371)
T ss_dssp SC-----EEEEECCCT
T ss_pred cE-----EEEEeeccC
Confidence 53 677776543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=95.92 E-value=0.6 Score=42.59 Aligned_cols=224 Identities=18% Similarity=0.121 Sum_probs=114.7
Q ss_pred EEEecCCCCCccceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEE
Q 007111 2 IVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFD 79 (617)
Q Consensus 2 ~V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd 79 (617)
||.+..+ +.|.++|+.+++....-+ .. .. -++++.- |.+||+.++.. ..+.+||
T Consensus 5 yV~~~~~-----~~v~v~D~~t~~~~~~i~----------~g--~~-p~~va~spdG~~l~v~~~~~------~~i~v~d 60 (301)
T d1l0qa2 5 YIANSES-----DNISVIDVTSNKVTATIP----------VG--SN-PMGAVISPDGTKVYVANAHS------NDVSIID 60 (301)
T ss_dssp EEEETTT-----TEEEEEETTTTEEEEEEE----------CS--SS-EEEEEECTTSSEEEEEEGGG------TEEEEEE
T ss_pred EEEECCC-----CEEEEEECCCCeEEEEEE----------CC--CC-ceEEEEeCCCCEEEEEECCC------CEEEEEE
Confidence 6666533 369999999998754332 11 11 1333332 45788776542 3699999
Q ss_pred CCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE
Q 007111 80 TETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 157 (617)
Q Consensus 80 ~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~ 157 (617)
+.+.+-...- +.....+.++.. ++ .+++.+ ... ..+..+|..+.+....- +.....+.++..
T Consensus 61 ~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 124 (301)
T d1l0qa2 61 TATNNVIATV-----PAGSSPQGVAVSPDGKQVYVTN-MAS-----STLSVIDTTSNTVAGTV-----KTGKSPLGLALS 124 (301)
T ss_dssp TTTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEE-TTT-----TEEEEEETTTTEEEEEE-----ECSSSEEEEEEC
T ss_pred CCCCceeeee-----eccccccccccccccccccccc-ccc-----ceeeecccccceeeeec-----cccccceEEEee
Confidence 9888643321 122223344443 33 455443 322 35778888887655432 111112233333
Q ss_pred -CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCC
Q 007111 158 -DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 234 (617)
Q Consensus 158 -~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~ 234 (617)
++..+++.+..+ ..+..++..+......... ......++.. +..+|+.+... .....++...
T Consensus 125 ~dg~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 189 (301)
T d1l0qa2 125 PDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSV-----GRSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVT 189 (301)
T ss_dssp TTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC-----CSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTT
T ss_pred cCCCeeeeeeccc-----cceeeeeccccceeeeccc-----CCCceEEEeeccccceeeecccc-----cccccccccc
Confidence 455455555443 3478888888776654432 1111223333 44566654432 2356667666
Q ss_pred CcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 235 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 235 ~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.......... .......+.. +...+|+.+... ..+.|+++|+.+.+
T Consensus 190 ~~~~~~~~~~-------~~~~~~~~~~-~g~~~~v~~~~~--~~~~v~v~D~~t~~ 235 (301)
T d1l0qa2 190 NSVIDTVKVE-------AAPSGIAVNP-EGTKAYVTNVDK--YFNTVSMIDTGTNK 235 (301)
T ss_dssp TEEEEEEECS-------SEEEEEEECT-TSSEEEEEEECS--SCCEEEEEETTTTE
T ss_pred eeeeeccccc-------CCcceeeccc-cccccccccccc--eeeeeeeeecCCCe
Confidence 6555543211 1122233333 335555543221 23578999988765
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.45 Score=45.30 Aligned_cols=212 Identities=13% Similarity=0.082 Sum_probs=102.3
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
.+.+||+...+........ ...+. -.+++.. ++.+++.|+.+ ..+..||..+..-.... .
T Consensus 120 ~i~iwd~~~~~~~~~~~~~--------~~~~~--v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~~~~~~~---~ 180 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAELT--------SSAPA--CYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQF---Q 180 (337)
T ss_dssp EEEEEECCCC--EEEEEEE--------CSSSC--EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE---C
T ss_pred ccccccccccccccccccc--------ccccc--ccccccccccccccccccc------ccccccccccccccccc---c
Confidence 5888888776654433210 01111 1222222 44555555542 24888898877643332 1
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCC
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 171 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~ 171 (617)
.... .-.+++. .++..++.|+.+ ..+.+||..+.+-.... ..+.+ -.+++.. ++. +++.|+.++
T Consensus 181 ~~~~-~v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~---~~~~~--i~~l~~~~~~~-~l~~~~~d~- 246 (337)
T d1gxra_ 181 GHTD-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQH---DFTSQ--IFSLGYCPTGE-WLAVGMESS- 246 (337)
T ss_dssp CCSS-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE---ECSSC--EEEEEECTTSS-EEEEEETTS-
T ss_pred cccc-cccccccccccccccccccc------ccccccccccceeeccc---ccccc--eEEEEEccccc-ccceecccc-
Confidence 1111 1112222 245666667654 35788998876532221 11111 1223333 344 666777654
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCC
Q 007111 172 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS 250 (617)
Q Consensus 172 ~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~ 250 (617)
.+..||+.+......... ... -.+++.. ++..++.||.. ..+.+||..+..-.... . .
T Consensus 247 ----~i~i~d~~~~~~~~~~~~----~~~-i~~v~~s~~g~~l~s~s~D-----g~i~iwd~~~~~~~~~~--~-----~ 305 (337)
T d1gxra_ 247 ----NVEVLHVNKPDKYQLHLH----ESC-VLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQS--K-----E 305 (337)
T ss_dssp ----CEEEEETTSSCEEEECCC----SSC-EEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEE--E-----C
T ss_pred ----cccccccccccccccccc----ccc-cceEEECCCCCEEEEEeCC-----CeEEEEECCCCCEEEEc--c-----C
Confidence 488999987765433221 111 1222322 55666677654 34788888765432221 1 1
Q ss_pred CcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 251 NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 251 r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
......+.+.. ++.+++.||.++ .|.+||+
T Consensus 306 ~~~v~~~~~s~--d~~~l~t~s~D~----~I~vWdl 335 (337)
T d1gxra_ 306 SSSVLSCDISV--DDKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp SSCEEEEEECT--TSCEEEEEETTS----CEEEEEE
T ss_pred CCCEEEEEEeC--CCCEEEEEeCCC----eEEEEEE
Confidence 11223334432 244667777654 4666664
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=95.61 E-value=0.8 Score=41.70 Aligned_cols=217 Identities=13% Similarity=0.056 Sum_probs=109.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
+.+.+||+.+.+-...-. .... .+.++.. +..+++.+.. . ..+..++..+.+....-
T Consensus 54 ~~i~v~d~~t~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~-- 112 (301)
T d1l0qa2 54 NDVSIIDTATNNVIATVP------------AGSS-PQGVAVSPDGKQVYVTNMA-S-----STLSVIDTTSNTVAGTV-- 112 (301)
T ss_dssp TEEEEEETTTTEEEEEEE------------CSSS-EEEEEECTTSSEEEEEETT-T-----TEEEEEETTTTEEEEEE--
T ss_pred CEEEEEECCCCceeeeee------------cccc-ccccccccccccccccccc-c-----ceeeecccccceeeeec--
Confidence 468999998876433221 1111 1333333 3355555432 1 35778888887654433
Q ss_pred CCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccC
Q 007111 92 GDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 168 (617)
Q Consensus 92 g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~ 168 (617)
+.....+.++.. ++ .+++.+.. ...+..++..+........ .... -...+.. ++..+|+.+..
T Consensus 113 ---~~~~~~~~~~~~~dg~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~ 178 (301)
T d1l0qa2 113 ---KTGKSPLGLALSPDGKKLYVTNNG------DKTVSVINTVTKAVINTVS--VGRS---PKGIAVTPDGTKVYVANFD 178 (301)
T ss_dssp ---ECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEE--CCSS---EEEEEECTTSSEEEEEETT
T ss_pred ---cccccceEEEeecCCCeeeeeecc------ccceeeeeccccceeeecc--cCCC---ceEEEeeccccceeeeccc
Confidence 111222233332 34 44444322 2357888888877554321 1111 1222333 44545555433
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEE-eecCCC
Q 007111 169 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPS 245 (617)
Q Consensus 169 ~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~-l~~~~~ 245 (617)
. ..+..++............+ ..-...+.. ++.+|+.+... ..+.++++|+.+.+-.. +.. .
T Consensus 179 ~-----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~v~~~~~---~~~~v~v~D~~t~~~~~~~~~-~- 243 (301)
T d1l0qa2 179 S-----MSISVIDTVTNSVIDTVKVE-----AAPSGIAVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKITARIPV-G- 243 (301)
T ss_dssp T-----TEEEEEETTTTEEEEEEECS-----SEEEEEEECTTSSEEEEEEECS---SCCEEEEEETTTTEEEEEEEC-C-
T ss_pred c-----cccccccccceeeeeccccc-----CCcceeeccccccccccccccc---eeeeeeeeecCCCeEEEEEcC-C-
Confidence 2 34667777776665554331 111222222 55666664322 22468999998876433 221 1
Q ss_pred CCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 246 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 246 ~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
.....+.+.. +...|||.++.+ +.|.+||+++.+-
T Consensus 244 ------~~~~~va~sp-dg~~l~va~~~~----~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 244 ------PDPAGIAVTP-DGKKVYVALSFC----NTVSVIDTATNTI 278 (301)
T ss_dssp ------SSEEEEEECT-TSSEEEEEETTT----TEEEEEETTTTEE
T ss_pred ------CCEEEEEEeC-CCCEEEEEECCC----CeEEEEECCCCeE
Confidence 1123344543 335788877653 3799999998764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=1 Score=41.47 Aligned_cols=173 Identities=12% Similarity=0.077 Sum_probs=89.8
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccE
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 153 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~ 153 (617)
.+..||..+....... ...............+..++.|+.++ .+.+||..+......- .+. ...-.
T Consensus 182 ~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~------~i~i~d~~~~~~~~~~-~~h----~~~v~ 247 (355)
T d1nexb2 182 TLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMDT------TIRIWDLENGELMYTL-QGH----TALVG 247 (355)
T ss_dssp CEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETTS------CEEEEETTTCCEEEEE-CCC----SSCCC
T ss_pred eeeeeecccccceeee---eccccccccccccccceeeecccccc------eEEeeecccccccccc-ccc----ccccc
Confidence 4778888877654443 11222222222233455666666543 4789998887654331 111 11123
Q ss_pred EEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECC
Q 007111 154 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 233 (617)
Q Consensus 154 a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~ 233 (617)
++.+.++ +++.|+.++ .|..||..+..-...... ......+....++.+++.|+ . +.+.+||+.
T Consensus 248 ~~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~g~-d-----~~i~vwd~~ 311 (355)
T d1nexb2 248 LLRLSDK-FLVSAAADG-----SIRGWDANDYSRKFSYHH----TNLSAITTFYVSDNILVSGS-E-----NQFNIYNLR 311 (355)
T ss_dssp EEEECSS-EEEEECTTS-----EEEEEETTTCCEEEEEEC----TTCCCCCEEEECSSEEEEEE-T-----TEEEEEETT
T ss_pred ccccccc-eeeeeeccc-----ccccccccccceeccccc----CCceEEEEEcCCCCEEEEEe-C-----CEEEEEECC
Confidence 4556677 677777764 488999877654322221 12222233344666655543 2 358899998
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEEC
Q 007111 234 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 234 ~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
+.+..... .........++.+. + +.+++.|+.++.. -||++|.
T Consensus 312 tg~~~~~~-----~~~~~~~V~~v~~~--~-~~~~~~~s~dg~~--~l~~~df 354 (355)
T d1nexb2 312 SGKLVHAN-----ILKDADQIWSVNFK--G-KTLVAAVEKDGQS--FLEILDF 354 (355)
T ss_dssp TCCBCCSC-----TTTTCSEEEEEEEE--T-TEEEEEEESSSCE--EEEEEEC
T ss_pred CCCEEEEE-----ecCCCCCEEEEEEc--C-CeEEEEEECCCcE--EEEEEeC
Confidence 76532111 01111222333333 2 4566677766542 5777764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.29 E-value=0.51 Score=45.10 Aligned_cols=212 Identities=12% Similarity=-0.001 Sum_probs=105.9
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 135 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~ 135 (617)
++.||.+--. ...+++||+.++.-+... +|. +.+..+..-++.+++.. .+.++.||+.+.+
T Consensus 29 ~~~l~wvDi~------~~~I~r~d~~~g~~~~~~----~~~-~~~~i~~~~dg~l~va~--------~~gl~~~d~~tg~ 89 (295)
T d2ghsa1 29 SGTAWWFNIL------ERELHELHLASGRKTVHA----LPF-MGSALAKISDSKQLIAS--------DDGLFLRDTATGV 89 (295)
T ss_dssp TTEEEEEEGG------GTEEEEEETTTTEEEEEE----CSS-CEEEEEEEETTEEEEEE--------TTEEEEEETTTCC
T ss_pred CCEEEEEECC------CCEEEEEECCCCeEEEEE----CCC-CcEEEEEecCCCEEEEE--------eCccEEeecccce
Confidence 5778876321 236999999999766554 232 22333334567777753 1358999999999
Q ss_pred EEEeecC-CCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEE
Q 007111 136 WLPLHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 212 (617)
Q Consensus 136 W~~l~~~-g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~~~I 212 (617)
++.+... ...+..|.....+--+++ +|+.-.. ..........|....+..+.+... .... -..+.. ++.+
T Consensus 90 ~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~-~~~~~~~g~l~~~~~g~~~~~~~~----~~~~-Ng~~~s~d~~~l 162 (295)
T d2ghsa1 90 LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMG-RKAETGAGSIYHVAKGKVTKLFAD----ISIP-NSICFSPDGTTG 162 (295)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEE-TTCCTTCEEEEEEETTEEEEEEEE----ESSE-EEEEECTTSCEE
T ss_pred eeEEeeeecCCCcccceeeEECCCCC-EEEEecc-ccccccceeEeeecCCcEEEEeec----cCCc-ceeeecCCCceE
Confidence 9877421 112222333333222455 6554322 222223344455556666665432 1111 122322 4567
Q ss_pred EEEecCCCCCccceEEEEECCCCc------EEEeecCCCCCCCCCcceEEEEEeecCCcEEEEE--cCCCCCCCCeEEEE
Q 007111 213 YIAGGGSRKKRHAETLIFDILKGE------WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF--GGIKKEPSNQVEVL 284 (617)
Q Consensus 213 yI~GG~s~~~~~~~v~~yDl~~~~------W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~--GG~~~~~~~dV~vy 284 (617)
|+..-.. ..+|+|+++... .......+.. ....-...++ ..+.||+. ||. .|.+|
T Consensus 163 ~~~dt~~-----~~I~~~~~d~~~~~~~~~~~~~~~~~~~----~g~pdG~~vD--~~GnlWva~~~~g------~V~~~ 225 (295)
T d2ghsa1 163 YFVDTKV-----NRLMRVPLDARTGLPTGKAEVFIDSTGI----KGGMDGSVCD--AEGHIWNARWGEG------AVDRY 225 (295)
T ss_dssp EEEETTT-----CEEEEEEBCTTTCCBSSCCEEEEECTTS----SSEEEEEEEC--TTSCEEEEEETTT------EEEEE
T ss_pred EEeeccc-----ceeeEeeecccccccccceEEEeccCcc----cccccceEEc--CCCCEEeeeeCCC------ceEEe
Confidence 7775332 468888864321 1111111111 1112222333 34567765 332 79999
Q ss_pred ECCCCccccccccccCccCCceeeeccCC
Q 007111 285 SIEKNESSMGRRSTPNAKGPGQLLFEKRS 313 (617)
Q Consensus 285 d~~~~~W~~~w~~~~~~~~~~v~vfGG~~ 313 (617)
|++.... ..+.. +. ..+.-+.|||..
T Consensus 226 dp~G~~~-~~i~l-P~-~~~T~~~FGG~d 251 (295)
T d2ghsa1 226 DTDGNHI-ARYEV-PG-KQTTCPAFIGPD 251 (295)
T ss_dssp CTTCCEE-EEEEC-SC-SBEEEEEEESTT
T ss_pred cCCCcEe-eEecC-CC-CceEEEEEeCCC
Confidence 9976553 22221 11 234456799863
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.23 E-value=0.53 Score=45.63 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=79.1
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcce-eEEEEE-CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG-HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~-~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
+++++++|+.+ ..+.+||..++++..+.. +..-... .+++.. ++.+++.||.+. .+.+||+.+
T Consensus 18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~---l~gH~~~V~~l~fsp~~~~l~s~s~D~------~i~vWd~~~ 82 (371)
T d1k8kc_ 18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHE---LKEHNGQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKG 82 (371)
T ss_dssp TSSEEEEECSS------SEEEEEEEETTEEEEEEE---EECCSSCEEEEEEETTTTEEEEEETTS------CEEEEEEET
T ss_pred CCCEEEEEeCC------CEEEEEECCCCCEEEEEE---ecCCCCCEEEEEECCCCCEEEEEECCC------eEEEEeecc
Confidence 56677777652 258888988888877652 1111111 222222 456666676643 488899999
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G 209 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~--~ 209 (617)
+.|..... .........++.+ +++ .++.|+.++. -.+|.++.....|....... .-+..-..+.+ +
T Consensus 83 ~~~~~~~~---~~~~~~~v~~i~~~p~~~-~l~~~s~d~~---i~i~~~~~~~~~~~~~~~~~---~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 83 RTWKPTLV---ILRINRAARCVRWAPNEK-KFAVGSGSRV---ISICYFEQENDWWVCKHIKK---PIRSTVLSLDWHPN 152 (371)
T ss_dssp TEEEEEEE---CCCCSSCEEEEEECTTSS-EEEEEETTSS---EEEEEEETTTTEEEEEEECT---TCCSCEEEEEECTT
T ss_pred cccccccc---cccccccccccccccccc-cceeecccCc---ceeeeeeccccccccccccc---cccccccccccccc
Confidence 99986632 2222222233333 445 5566655432 23555665666565444321 11222222223 5
Q ss_pred CEEEEEecCCCCCccceEEEEECCCC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+.+++.|+..+ .+.+||+...
T Consensus 153 ~~~l~s~s~D~-----~v~v~~~~~~ 173 (371)
T d1k8kc_ 153 SVLLAAGSCDF-----KCRIFSAYIK 173 (371)
T ss_dssp SSEEEEEETTS-----CEEEEECCCT
T ss_pred ccceeccccCc-----EEEEEeeccC
Confidence 56667776543 3667776543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.11 E-value=0.75 Score=42.49 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=30.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 225 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 225 ~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
+.+.+||+.+.+.......+ ..-++ +.+.. +...|| +|+.+ +.|.+||.++.+
T Consensus 260 ~~i~v~d~~~~~~~~~~~~~------~~~~~-~~~s~-dG~~l~-v~~~~----~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKRVPLP------HSYYS-VNVST-DGSTVW-LGGAL----GDLAAYDAETLE 312 (337)
T ss_dssp SEEEEEETTTTEEEEEEECS------SCCCE-EEECT-TSCEEE-EESBS----SEEEEEETTTCC
T ss_pred ccEEEEECCCCcEEEEEcCC------CCEEE-EEECC-CCCEEE-EEeCC----CcEEEEECCCCc
Confidence 46889999888765543211 11123 34432 334555 45543 479999998865
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=1.5 Score=41.29 Aligned_cols=151 Identities=15% Similarity=0.040 Sum_probs=74.7
Q ss_pred CEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE---CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 57 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 57 ~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~---~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
..+++.||.+ ..+..||..+..-..... ..........++.+ ++.+++.||.++ .+.+||..+
T Consensus 172 ~~~~~~~~~d------~~v~~~d~~~~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d~------~i~iwd~~~ 237 (325)
T d1pgua1 172 PMRSMTVGDD------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKS 237 (325)
T ss_dssp SCEEEEEETT------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTT
T ss_pred cceEEEeecc------cccccccccccccceecc--cccCCCCccEEeeeccccceecccccccc------ceeeeeecc
Confidence 3456666653 257778876654332221 11111122222223 357777777654 388999988
Q ss_pred CcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWY 213 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~Iy 213 (617)
.+....-.....+.....++....+++ +++.||.++ .+.+||+.+++.................+++..++..+
T Consensus 238 ~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (325)
T d1pgua1 238 GEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADA-----TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311 (325)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTS-----EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred ccccccccccccccccceeeeeccCCC-EEEEEeCCC-----eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEE
Confidence 875433111111111112223334566 677777764 48899999887654333211111111122333344455
Q ss_pred EEecCCCCCccceEEEEEC
Q 007111 214 IAGGGSRKKRHAETLIFDI 232 (617)
Q Consensus 214 I~GG~s~~~~~~~v~~yDl 232 (617)
+.||.++ .+.+||+
T Consensus 312 ~s~s~dg-----~i~vwdl 325 (325)
T d1pgua1 312 ISLSLDG-----TLNFYEL 325 (325)
T ss_dssp EEEETTS-----CEEEEET
T ss_pred EEEECCC-----EEEEEEC
Confidence 6666543 3666664
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=1.6 Score=41.17 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=95.7
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 133 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t 133 (617)
++..++.|+.+ ..+.+||+...+...... ++..........+ ++.+++.|+.+. .+..||..+
T Consensus 108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d~------~i~~~~~~~ 172 (337)
T d1gxra_ 108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDLHN 172 (337)
T ss_dssp TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEeecc------cccccccccccccccccc---ccccccccccccccccccccccccccc------ccccccccc
Confidence 55666777763 258888987776554431 1111111122222 455666665433 478899888
Q ss_pred CcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 007111 134 LTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 211 (617)
Q Consensus 134 ~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~ 211 (617)
.+-.... ..... .-.+++.. ++. .+++|+.++ .+..||+.+..-...... + ..-.+++.. ++.
T Consensus 173 ~~~~~~~---~~~~~-~v~~l~~s~~~~-~~~~~~~d~-----~v~i~d~~~~~~~~~~~~---~--~~i~~l~~~~~~~ 237 (337)
T d1gxra_ 173 QTLVRQF---QGHTD-GASCIDISNDGT-KLWTGGLDN-----TVRSWDLREGRQLQQHDF---T--SQIFSLGYCPTGE 237 (337)
T ss_dssp TEEEEEE---CCCSS-CEEEEEECTTSS-EEEEEETTS-----EEEEEETTTTEEEEEEEC---S--SCEEEEEECTTSS
T ss_pred ccccccc---ccccc-cccccccccccc-ccccccccc-----cccccccccceeeccccc---c--cceEEEEEccccc
Confidence 7644332 11111 11122222 344 667777653 588999987754332221 1 111233333 556
Q ss_pred EEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 212 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 212 IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+++|+..+ .+.+||+....-..... .......+.+.. ++.+++.||.++ .|.+||..+.+
T Consensus 238 ~l~~~~~d~-----~i~i~d~~~~~~~~~~~-------~~~~i~~v~~s~--~g~~l~s~s~Dg----~i~iwd~~~~~ 298 (337)
T d1gxra_ 238 WLAVGMESS-----NVEVLHVNKPDKYQLHL-------HESCVLSLKFAY--CGKWFVSTGKDN----LLNAWRTPYGA 298 (337)
T ss_dssp EEEEEETTS-----CEEEEETTSSCEEEECC-------CSSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred ccceecccc-----ccccccccccccccccc-------cccccceEEECC--CCCEEEEEeCCC----eEEEEECCCCC
Confidence 666776543 47888987765443321 111233334432 234666777653 57888877654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.24 E-value=1.1 Score=42.71 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=92.3
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++++++.|+.+. .+..+|..+..+..... ...... .++.. .++..++.|+.+ ..+.++|..+.
T Consensus 132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~---~h~~~v-~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~ 195 (388)
T d1erja_ 132 DGKFLATGAEDR------LIRIWDIENRKIVMILQ---GHEQDI-YSLDYFPSGDKLVSGSGD------RTVRIWDLRTG 195 (388)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSCE-EEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred CCCcceeccccc------ccccccccccccccccc---cccccc-cccccccccccccccccc------eeeeeeecccc
Confidence 456777777532 47888888877655431 111111 11222 234455555533 34788888877
Q ss_pred cEEEeecCCCCCCCCcccEEEEE--CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCC-CCCC-Cc-ceEEEEE-
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF-HPSP-RA-GCCGVLC- 208 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~--~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~-~P~~-R~-~ha~v~~- 208 (617)
....... .. .....++.. ++. +++.|+.++ .+..||..+........... .... .. -.+++..
T Consensus 196 ~~~~~~~---~~--~~~~~~~~~~~~~~-~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 264 (388)
T d1erja_ 196 QCSLTLS---IE--DGVTTVAVSPGDGK-YIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264 (388)
T ss_dssp EEEEEEE---CS--SCEEEEEECSTTCC-EEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred ccccccc---cc--cccccccccCCCCC-eEEEEcCCC-----eEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence 6544321 11 111122222 344 677777764 38899998877654432111 0111 11 1223332
Q ss_pred CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCC------CCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEE
Q 007111 209 GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS------VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 282 (617)
Q Consensus 209 ~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~------p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~ 282 (617)
++..++.|+..+ .+.+||+.+.........+... .........+.+.. ++.+++.|+.++ .|.
T Consensus 265 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~sg~~dg----~i~ 333 (388)
T d1erja_ 265 DGQSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ--NDEYILSGSKDR----GVL 333 (388)
T ss_dssp TSSEEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECG--GGCEEEEEETTS----EEE
T ss_pred CCCEEEEEECCC-----cEEEEeccCCccccccccccccceeeecccccceEEEEEECC--CCCEEEEEeCCC----EEE
Confidence 556666666543 4778887654322211100000 00111223333332 245677777653 688
Q ss_pred EEECCCCc
Q 007111 283 VLSIEKNE 290 (617)
Q Consensus 283 vyd~~~~~ 290 (617)
+||+.+.+
T Consensus 334 vwd~~~~~ 341 (388)
T d1erja_ 334 FWDKKSGN 341 (388)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99988765
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.24 E-value=2.2 Score=40.64 Aligned_cols=194 Identities=12% Similarity=0.025 Sum_probs=100.4
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 92 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 92 (617)
..|++|++.+......... .... -++++.. ++++||..-.. ......++.++..+........
T Consensus 61 g~I~ri~p~g~~~~~~~~~-----------~~~~-p~gla~~~dG~l~va~~~~--~~~~~~i~~~~~~~~~~~~~~~-- 124 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPFVS-----------HKAN-PAAIKIHKDGRLFVCYLGD--FKSTGGIFAATENGDNLQDIIE-- 124 (319)
T ss_dssp CEEEEECTTTCCEEEEEEC-----------SSSS-EEEEEECTTSCEEEEECTT--SSSCCEEEEECTTSCSCEEEEC--
T ss_pred CEEEEEECCCCeEEEEEeC-----------CCCC-eeEEEECCCCCEEEEecCC--CccceeEEEEcCCCceeeeecc--
Confidence 3577888877654433210 1111 2444443 57888874211 1223468889988887655542
Q ss_pred CCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCC
Q 007111 93 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 170 (617)
Q Consensus 93 ~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~ 170 (617)
..........+++ -++.||+-.-..........++++++....++.+.. .+..+ ...++- +++.||+.--.
T Consensus 125 ~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--~~~~p---nGia~s~dg~~lyvad~~-- 197 (319)
T d2dg1a1 125 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVA---NGIALSTDEKVLWVTETT-- 197 (319)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSE---EEEEECTTSSEEEEEEGG--
T ss_pred CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee--cccee---eeeeeccccceEEEeccc--
Confidence 2222222222333 357888753222222235679999998887776631 22221 123332 44458876432
Q ss_pred CCCCCeEEEEECCCCc---EE---EeecCCCCCCCCcce-EEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEee
Q 007111 171 SKTLNDLYSLDFETMI---WT---RIKIRGFHPSPRAGC-CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 241 (617)
Q Consensus 171 ~~~~n~v~~yD~~t~~---W~---~~~~~g~~P~~R~~h-a~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~ 241 (617)
.+.|++||+..+. +. ..... .....+. .++.. +++|||..-.. ..+.+||+.......+.
T Consensus 198 ---~~~I~~~d~~~~g~~~~~~~~~~~~~---~~~~~~PdGl~vD~~G~l~Va~~~~-----g~V~~~~p~G~~l~~i~ 265 (319)
T d2dg1a1 198 ---ANRLHRIALEDDGVTIQPFGATIPYY---FTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLVFNKRGYPIGQIL 265 (319)
T ss_dssp ---GTEEEEEEECTTSSSEEEEEEEEEEE---CCSSSEEEEEEEBTTCCEEEEEETT-----TEEEEECTTSCEEEEEE
T ss_pred ---CCceEEEEEcCCCceeccccceeeec---cCCccceeeeeEcCCCCEEEEEcCC-----CEEEEECCCCcEEEEEe
Confidence 3569999875431 11 11111 1111122 34443 67899884322 35899998766555554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.78 E-value=1 Score=42.11 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=78.7
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccE
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 153 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~ 153 (617)
.+++||..+....+++ ...+.......-+++.++++|.+.. ..++++|..+.....+. . ....-..
T Consensus 25 ~v~v~d~~~~~~~~~~-----~~~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~---~--~~~~v~~ 90 (360)
T d1k32a3 25 QAFIQDVSGTYVLKVP-----EPLRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFE---E--NLGNVFA 90 (360)
T ss_dssp EEEEECTTSSBEEECS-----CCSCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECC---C--CCCSEEE
T ss_pred eEEEEECCCCcEEEcc-----CCCCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEee---C--CCceEEe
Confidence 5888888888877764 1223332222336766666654432 34899999998887763 1 1111223
Q ss_pred EEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC-----CCccceE
Q 007111 154 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR-----KKRHAET 227 (617)
Q Consensus 154 a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~-----~~~~~~v 227 (617)
++.. +++ .+++++.+ ..++.++..+......... ...........-+++.+++++... ......+
T Consensus 91 ~~~spdg~-~l~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~ 161 (360)
T d1k32a3 91 MGVDRNGK-FAVVANDR-----FEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161 (360)
T ss_dssp EEECTTSS-EEEEEETT-----SEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred eeeccccc-ccceeccc-----cccccccccccceeeeeec---ccccccchhhccceeeeeeeccccccceeeccccce
Confidence 3333 455 56666654 3589999988877665443 111111122222555555543221 1223457
Q ss_pred EEEECCCCcEEE
Q 007111 228 LIFDILKGEWSV 239 (617)
Q Consensus 228 ~~yDl~~~~W~~ 239 (617)
+.+|+.+..-..
T Consensus 162 ~v~d~~~~~~~~ 173 (360)
T d1k32a3 162 HVYDMEGRKIFA 173 (360)
T ss_dssp EEEETTTTEEEE
T ss_pred eeeccccCceee
Confidence 889988765444
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.72 E-value=0.3 Score=45.25 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=67.5
Q ss_pred EEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCccc
Q 007111 74 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 152 (617)
Q Consensus 74 ~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h 152 (617)
.+..||+.+.....+.... ... .-.+++.. ++.+++.|+.++ .+.+||..++...... ..+......-
T Consensus 159 ~i~~~d~~~~~~~~~~~~~--~~~-~i~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~~~~~~--~~~~~h~~~v 227 (299)
T d1nr0a2 159 KVHVYKLSGASVSEVKTIV--HPA-EITSVAFSNNGAFLVATDQSR------KVIPYSVANNFELAHT--NSWTFHTAKV 227 (299)
T ss_dssp EEEEEEEETTEEEEEEEEE--CSS-CEEEEEECTTSSEEEEEETTS------CEEEEEGGGTTEESCC--CCCCCCSSCE
T ss_pred ccccccccccccccccccc--ccc-ccccccccccccccccccccc------cccccccccccccccc--cccccccccc
Confidence 5778887777655443211 111 11122222 345666666543 4889998877654321 1121111111
Q ss_pred EE-EEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEE
Q 007111 153 VA-ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 230 (617)
Q Consensus 153 ~a-~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~y 230 (617)
.+ +.. ++. +++.||.++ .+..||+.+.....+........ ..-.+++..++..++.||..+ .+.++
T Consensus 228 ~~l~~s~~~~-~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~s~D~-----~i~iW 295 (299)
T d1nr0a2 228 ACVSWSPDNV-RLATGSLDN-----SVIVWNMNKPSDHPIIIKGAHAM-SSVNSVIWLNETTIVSAGQDS-----NIKFW 295 (299)
T ss_dssp EEEEECTTSS-EEEEEETTS-----CEEEEETTCTTSCCEEETTSSTT-SCEEEEEEEETTEEEEEETTS-----CEEEE
T ss_pred cccccccccc-ceEEEcCCC-----EEEEEECCCCCcceEEEecCCCC-CcEEEEEECCCCEEEEEeCCC-----EEEEE
Confidence 22 233 445 777888764 38999998765543333211111 111223334555666777543 25566
Q ss_pred EC
Q 007111 231 DI 232 (617)
Q Consensus 231 Dl 232 (617)
|+
T Consensus 296 dl 297 (299)
T d1nr0a2 296 NV 297 (299)
T ss_dssp EC
T ss_pred ec
Confidence 64
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.38 E-value=2.8 Score=38.21 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=58.0
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 162 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 162 LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
+++.|+.++ .+..||..+..-...-.. .. ..-.+++.. ++.+++.|+..+ .+..||+........
T Consensus 198 ~~~~~~~d~-----~v~i~d~~~~~~~~~~~~---h~-~~i~~v~~~p~~~~l~s~s~d~-----~i~~~~~~~~~~~~~ 263 (340)
T d1tbga_ 198 LFVSGACDA-----SAKLWDVREGMCRQTFTG---HE-SDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQELMT 263 (340)
T ss_dssp EEEEEETTT-----EEEEEETTTTEEEEEECC---CS-SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEE
T ss_pred eeEEeecCc-----eEEEEECCCCcEEEEEeC---CC-CCeEEEEECCCCCEEEEEeCCC-----eEEEEeecccccccc
Confidence 667766653 488999887654432221 11 111233333 566777776543 378889887765443
Q ss_pred ecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 241 ITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 241 ~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
... .........+.+.. .+.+++.|+.++ .|.+||+.+.+
T Consensus 264 ~~~----~~~~~~i~~~~~s~--~~~~l~~g~~dg----~i~iwd~~~~~ 303 (340)
T d1tbga_ 264 YSH----DNIICGITSVSFSK--SGRLLLAGYDDF----NCNVWDALKAD 303 (340)
T ss_dssp ECC----TTCCSCEEEEEECS--SSCEEEEEETTS----CEEEEETTTCC
T ss_pred ccc----ccccCceEEEEECC--CCCEEEEEECCC----EEEEEECCCCc
Confidence 211 11222334444432 345677787654 58889987654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.30 E-value=0.3 Score=45.18 Aligned_cols=148 Identities=10% Similarity=0.155 Sum_probs=73.7
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++.+++.|+.+ ..+.+||+.+.+...+.... ....-.+++.. ++. +++.|+.++ .+..||..++
T Consensus 147 ~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~-~l~~~~~d~-----~i~~~~~~~~ 211 (299)
T d1nr0a2 147 DKQFVAVGGQD------SKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGA-FLVATDQSR-----KVIPYSVANN 211 (299)
T ss_dssp TSCEEEEEETT------SEEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSS-EEEEEETTS-----CEEEEEGGGT
T ss_pred ccccccccccc------cccccccccccccccccccc---ccccccccccccccc-ccccccccc-----cccccccccc
Confidence 34566666543 34888888877765542111 11111122333 344 566676654 3899998776
Q ss_pred cEEEeecCCCCCC-CCcceEEEEE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecC
Q 007111 186 IWTRIKIRGFHPS-PRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE 263 (617)
Q Consensus 186 ~W~~~~~~g~~P~-~R~~ha~v~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~ 263 (617)
........ ... ...-.+++.. ++.+++.||..+ .+.+||+.+.....+..... .......++... +
T Consensus 212 ~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~-~- 279 (299)
T d1nr0a2 212 FELAHTNS--WTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSDHPIIIKGA---HAMSSVNSVIWL-N- 279 (299)
T ss_dssp TEESCCCC--CCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTSCCEEETTS---STTSCEEEEEEE-E-
T ss_pred cccccccc--ccccccccccccccccccceEEEcCCC-----EEEEEECCCCCcceEEEecC---CCCCcEEEEEEC-C-
Confidence 65432221 011 1111223333 667777777653 48899987654332221111 112223333332 2
Q ss_pred CcEEEEEcCCCCCCCCeEEEEEC
Q 007111 264 KDFLVAFGGIKKEPSNQVEVLSI 286 (617)
Q Consensus 264 ~~~L~I~GG~~~~~~~dV~vyd~ 286 (617)
+..++.||.++ .|-+||+
T Consensus 280 -~~~l~s~s~D~----~i~iWdl 297 (299)
T d1nr0a2 280 -ETTIVSAGQDS----NIKFWNV 297 (299)
T ss_dssp -TTEEEEEETTS----CEEEEEC
T ss_pred -CCEEEEEeCCC----EEEEEec
Confidence 23566777654 4666665
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.91 E-value=3.3 Score=37.70 Aligned_cols=137 Identities=14% Similarity=0.176 Sum_probs=69.3
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
.+.+++.|+.++ .+.+||..+.+-...- .+ ... .-.+++.. ++. +++.|+.++. +..||....
T Consensus 195 ~~~~~~~~~~d~------~v~i~d~~~~~~~~~~-~~--h~~-~i~~v~~~p~~~-~l~s~s~d~~-----i~~~~~~~~ 258 (340)
T d1tbga_ 195 DTRLFVSGACDA------SAKLWDVREGMCRQTF-TG--HES-DINAICFFPNGN-AFATGSDDAT-----CRLFDLRAD 258 (340)
T ss_dssp TSSEEEEEETTT------EEEEEETTTTEEEEEE-CC--CSS-CEEEEEECTTSS-EEEEEETTSC-----EEEEETTTT
T ss_pred ccceeEEeecCc------eEEEEECCCCcEEEEE-eC--CCC-CeEEEEECCCCC-EEEEEeCCCe-----EEEEeeccc
Confidence 345666665433 4788898877643221 01 111 11122333 345 6777776643 888998877
Q ss_pred cEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecC
Q 007111 186 IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE 263 (617)
Q Consensus 186 ~W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~ 263 (617)
........ .........+.+ ++.+++.|+..+ .+.+||+.+..-...- .. -.....++.+..
T Consensus 259 ~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~--~~----H~~~V~~l~~s~-- 322 (340)
T d1tbga_ 259 QELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDF-----NCNVWDALKADRAGVL--AG----HDNRVSCLGVTD-- 322 (340)
T ss_dssp EEEEEECC---TTCCSCEEEEEECSSSCEEEEEETTS-----CEEEEETTTCCEEEEE--CC----CSSCEEEEEECT--
T ss_pred cccccccc---ccccCceEEEEECCCCCEEEEEECCC-----EEEEEECCCCcEEEEE--cC----CCCCEEEEEEeC--
Confidence 65544332 111222222333 566777777553 4889998775533321 11 011233344432
Q ss_pred CcEEEEEcCCCC
Q 007111 264 KDFLVAFGGIKK 275 (617)
Q Consensus 264 ~~~L~I~GG~~~ 275 (617)
++.+++.||.++
T Consensus 323 d~~~l~s~s~Dg 334 (340)
T d1tbga_ 323 DGMAVATGSWDS 334 (340)
T ss_dssp TSSCEEEEETTS
T ss_pred CCCEEEEEccCC
Confidence 234566787764
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=1.7 Score=38.82 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=84.4
Q ss_pred EEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc---CCCCCCcceeEEEE-ECCEEEEEeecCCCCCccCeE
Q 007111 51 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 51 s~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v 126 (617)
+++.+++.+|+|=|. -+|+++.....+....+. ..+|. ...++... .++.+|+|-| +.+
T Consensus 13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~-~IDAAf~~~~~~~~yffkg--------~~~ 75 (192)
T d1pexa_ 13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPN-RIDAAYEHPSHDLIFIFRG--------RKF 75 (192)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCS-SCCEEEEETTTTEEEEEET--------TEE
T ss_pred EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCC-cccceEEEcCCCEEEEEcC--------CEE
Confidence 677789999999765 478887655545443322 12333 23333322 2578888854 346
Q ss_pred EEEECCCCcE---EEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----eec-CCC
Q 007111 127 HMFDLKSLTW---LPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKI-RGF 195 (617)
Q Consensus 127 ~~yD~~t~~W---~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~~-~g~ 195 (617)
|+|+-.+..+ +.+... -+|.+-..- ++..+ ++..+|+|-|. ..|+||..++.-.. +.. -+.
T Consensus 76 w~y~~~~~~~gyPk~i~~~-~~~~~~~~idaA~~~~~~~~~y~Fkg~-------~y~~y~~~~~~~~~~~pk~I~~~w~g 147 (192)
T d1pexa_ 76 WALNGYDILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSGN-------QVWRYDDTNHIMDKDYPRLIEEDFPG 147 (192)
T ss_dssp EEESTTCCCTTCSEESTTT-TCCTTCCCCCEEEECTTTSEEEEEETT-------EEEEEETTTTEECSSCCCBHHHHSTT
T ss_pred EEEcCCcccCCCCeEeeee-ecCCCCCCccEEEEECCCCEEEEEeCC-------EEEEEcCccccccCCCcEEHhhcCCC
Confidence 7776544322 122110 112221122 33333 33448998663 48999987654221 110 111
Q ss_pred CCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEE
Q 007111 196 HPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 239 (617)
Q Consensus 196 ~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~ 239 (617)
+|. . -.++...++.+|+|-| +..|+||..+.+-..
T Consensus 148 vp~-~-vdAa~~~~g~~YfF~g-------~~y~r~~~~~~~v~~ 182 (192)
T d1pexa_ 148 IGD-K-VDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 182 (192)
T ss_dssp SCS-C-CSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCC-C-ceEEEEeCCEEEEEEC-------CEEEEEeCCcCeEcc
Confidence 222 2 2344456999999987 458899987766444
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.58 E-value=6.8 Score=40.49 Aligned_cols=123 Identities=12% Similarity=0.057 Sum_probs=71.4
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCC-----CCCCcceeEEEEECCEEEEEeecCCCCCccC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGD-----IPVARSGHTVVRASSVLILFGGEDGKRRKLN 124 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~-----~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~ 124 (617)
=+++++.|||..+. ..++.+|..|.+ |+.-+.... ..........+..++.||+.. .-.
T Consensus 62 Piv~~g~vyv~t~~-------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~g 127 (560)
T d1kv9a2 62 PLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-------LDG 127 (560)
T ss_dssp CEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-------TTS
T ss_pred CEEECCEEEEECCC-------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEe-------CCC
Confidence 35779999987653 369999999886 985431100 111122334556678887763 124
Q ss_pred eEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCC-CCCCCCeEEEEECCCCc--EEEee
Q 007111 125 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMI--WTRIK 191 (617)
Q Consensus 125 ~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~-~~~~~n~v~~yD~~t~~--W~~~~ 191 (617)
.++.+|..+.+ |..-. ....+......+-.++++. + ++|+.. .......|..||..|++ |+...
T Consensus 128 ~l~Alda~tG~~~w~~~~-~~~~~~~~~~~~p~v~~~~-v-ivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 128 RLIALDAKTGKAIWSQQT-TDPAKPYSITGAPRVVKGK-V-IIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp EEEEEETTTCCEEEEEEC-SCTTSSCBCCSCCEEETTE-E-EECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCcEEeccCc-cCcccceeeeeeeeeecCc-c-cccccceeccccceEEEEECCCceEEeeeee
Confidence 58999998875 87542 1121222222334455555 4 444432 23334579999998875 76553
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=3.7 Score=37.34 Aligned_cols=144 Identities=13% Similarity=0.114 Sum_probs=74.8
Q ss_pred CEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 108 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 108 ~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
+.+++.|+.+. .+..||..+.+..... ...... ....... .+. .++.|+.++ .+..||..++.
T Consensus 171 ~~~~~~~~~d~------~i~~~d~~~~~~~~~~---~~~~~~-~~~~~~~~~~~-~~~~~~~d~-----~i~i~d~~~~~ 234 (355)
T d1nexb2 171 GNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTDR-IYSTIYDHERK-RCISASMDT-----TIRIWDLENGE 234 (355)
T ss_dssp TTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSSC-EEEEEEETTTT-EEEEEETTS-----CEEEEETTTCC
T ss_pred cceeeeecccc------eeeeeecccccceeee---eccccc-cccccccccce-eeecccccc-----eEEeeeccccc
Confidence 44555554433 4788998887765442 111112 2233333 445 666776654 38899998776
Q ss_pred EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcE
Q 007111 187 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDF 266 (617)
Q Consensus 187 W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~ 266 (617)
....... ...+ ..++.+++..++.|+..+ .+.+||+.+..-....... . ..+.+.+... +.
T Consensus 235 ~~~~~~~--h~~~---v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~-----~--~~~~~~~~~~--~~ 295 (355)
T d1nexb2 235 LMYTLQG--HTAL---VGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHHT-----N--LSAITTFYVS--DN 295 (355)
T ss_dssp EEEEECC--CSSC---CCEEEECSSEEEEECTTS-----EEEEEETTTCCEEEEEECT-----T--CCCCCEEEEC--SS
T ss_pred ccccccc--cccc---ccccccccceeeeeeccc-----ccccccccccceecccccC-----C--ceEEEEEcCC--CC
Confidence 5543321 1111 123445666677777553 4788898776533221111 0 1111222222 34
Q ss_pred EEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 267 LVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 267 L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
+++. |.+ +.|.+||+++.+.
T Consensus 296 ~l~~-g~d----~~i~vwd~~tg~~ 315 (355)
T d1nexb2 296 ILVS-GSE----NQFNIYNLRSGKL 315 (355)
T ss_dssp EEEE-EET----TEEEEEETTTCCB
T ss_pred EEEE-EeC----CEEEEEECCCCCE
Confidence 5444 443 3789999988764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=2.6 Score=39.57 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=56.2
Q ss_pred CCEEEEEcccCCCCCCceEEEEEECCCCcEEE-eeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCC
Q 007111 56 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL 134 (617)
Q Consensus 56 g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~ 134 (617)
++.+++.||.+. .+.+||..+++... +.. ...+....-++....++.+++.||.++ .+.+||+.+.
T Consensus 217 ~~~~l~s~~~d~------~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~------~i~iwd~~~~ 283 (325)
T d1pgua1 217 SGEFVITVGSDR------KISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADA------TIRVWDVTTS 283 (325)
T ss_dssp TCCEEEEEETTC------CEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTS------EEEEEETTTT
T ss_pred cceecccccccc------ceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCC------eEEEEECCCC
Confidence 356777777532 48889988876433 221 111222222333334667777777553 4889999988
Q ss_pred cEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEEC
Q 007111 135 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDF 182 (617)
Q Consensus 135 ~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~ 182 (617)
+-.+.-............+++..++. .++.||.++. |.+||+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~-----i~vwdl 325 (325)
T d1pgua1 284 KCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGT-----LNFYEL 325 (325)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEETT-EEEEEETTSC-----EEEEET
T ss_pred CEEEEEEecCCcccCeEEEEEECCCC-EEEEEECCCE-----EEEEEC
Confidence 74432111111111111122333455 5667777643 777764
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=3.6 Score=36.77 Aligned_cols=158 Identities=9% Similarity=-0.042 Sum_probs=85.6
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccC---CCCCCcceeEEEE-ECCEEEEEeecCCCCCccCe
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG---DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g---~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~ 125 (617)
-+++.+++.+|+|-|. -+|+++..........+.- .+|.. ..++... .++++|+|-| +.
T Consensus 15 DAv~~~~G~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~glp~~-IDAAf~~~~~~~~yfFkG--------~~ 77 (195)
T d1su3a2 15 DAITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG-LEAAYEFADRDEVRFFKG--------NK 77 (195)
T ss_dssp SEEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS-CCEEEEEGGGTEEEEEET--------TE
T ss_pred eEEEEcCCeEEEEeCC--------EEEEeeCCCCccCccchHhhCcCCCCc-ccceEEecCCcEEEEECC--------cE
Confidence 3677789999999775 4777776655544333221 23332 2222222 2578999854 45
Q ss_pred EEEEECCCCc---EEEeecCCCCCCCCccc-EEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----eec-CC
Q 007111 126 LHMFDLKSLT---WLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKI-RG 194 (617)
Q Consensus 126 v~~yD~~t~~---W~~l~~~g~~P~~R~~h-~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~~-~g 194 (617)
+|+|+-.+.. -..+...-.+|.....- ++..+ .+..+|+|-|. ..|+||..++.-.. +.. -+
T Consensus 78 y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~-------~y~ry~~~~~~vd~gyPk~I~~~w~ 150 (195)
T d1su3a2 78 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN-------KYWRYDEYKRSMDPGYPKMIAHDFP 150 (195)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC-------EEEEEeccCccccCCcccccccccC
Confidence 7888743211 11121000123222222 23333 33359999874 58999987764221 111 11
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEe
Q 007111 195 FHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 240 (617)
Q Consensus 195 ~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l 240 (617)
-+|.. -.++...++++|+|-| +..|+||....+-...
T Consensus 151 Gvp~~--iDAAf~~~g~~YfFkg-------~~y~r~~~~~~~v~~~ 187 (195)
T d1su3a2 151 GIGHK--VDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILTL 187 (195)
T ss_dssp TSCSC--CSEEEEETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCCCC--ccEEEEECCeEEEEEC-------CEEEEEeCCcCEEEec
Confidence 12322 2344556999999987 4589999877665443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.54 E-value=9 Score=39.61 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=71.5
Q ss_pred EEECCEEEEEcccCCCCCCceEEEEEECCCCc--EEEeeccCC-----CCCCcceeEEEEECCEEEEEeecCCCCCccCe
Q 007111 53 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGD-----IPVARSGHTVVRASSVLILFGGEDGKRRKLND 125 (617)
Q Consensus 53 v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~-----~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~ 125 (617)
+++++.||+.... ..|+.+|..|.+ |+.-+.... ..........+..++.+|+.. .-..
T Consensus 74 iv~~g~vyv~t~~-------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t-------~~g~ 139 (573)
T d1kb0a2 74 VVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDGR 139 (573)
T ss_dssp EEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTSE
T ss_pred EEECCEEEEECCC-------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe-------cccc
Confidence 4579999987543 358999999885 876431100 011122234566788888752 2346
Q ss_pred EEEEECCCCc--EEEeecCCCCCCCCc--ccEEEEECCcEEEEEccCCC-CCCCCeEEEEECCCCc--EEEeec
Q 007111 126 LHMFDLKSLT--WLPLHCTGTGPSPRS--NHVAALYDDKNLLIFGGSSK-SKTLNDLYSLDFETMI--WTRIKI 192 (617)
Q Consensus 126 v~~yD~~t~~--W~~l~~~g~~P~~R~--~h~a~~~~~~~LyV~GG~~~-~~~~n~v~~yD~~t~~--W~~~~~ 192 (617)
++.+|..+.+ |+.-.. ..+...+ ..+-+++++. +|+|+... ......|..||..|++ |+.-..
T Consensus 140 l~alda~tG~~~W~~~~~--~~~~~~~~~~~~p~v~~~~--vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 209 (573)
T d1kb0a2 140 LIALDAATGKEVWHQNTF--EGQKGSLTITGAPRVFKGK--VIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (573)
T ss_dssp EEEEETTTCCEEEEEETT--TTCCSSCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred eeeeccccccceecccCc--cCCcceEEeecceEEEecc--EEEeeccccccccceEEEEecCCccceeeeeec
Confidence 8999998876 876421 1222211 2233455555 45555433 2344579999999876 875433
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=2.8 Score=37.49 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=80.3
Q ss_pred eEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEE----Eeecc-CCCCCCcceeEEEE-ECCEEEEEeecCCCCCcc
Q 007111 50 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS----VVEAK-GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKL 123 (617)
Q Consensus 50 hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~----~~~~~-g~~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~ 123 (617)
-+++.+++.+|+|-|. .+|+|+.....+. .+... ..+|. ...++... .++++|+|-|
T Consensus 10 DAv~~~~G~~y~Fkg~--------~ywr~~~~~~~~~~~P~~I~~~w~glp~-~IDAAf~~~~~~k~yfFkg-------- 72 (195)
T d1itva_ 10 DAIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPR-KLDSVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp SEEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCS-SCSEEEECTTTCCEEEEET--------
T ss_pred ceEEEeCCEEEEEECC--------EEEEEeCCCCCcCCCcEEeeeecCCCCC-CccEEEEECCCCEEEEEec--------
Confidence 3567789999999775 5888875543321 11111 12332 23333322 2568888854
Q ss_pred CeEEEEECCCCcE-EEeecCCCCCCCCccc-EEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEE-----eec-CCC
Q 007111 124 NDLHMFDLKSLTW-LPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKI-RGF 195 (617)
Q Consensus 124 ~~v~~yD~~t~~W-~~l~~~g~~P~~R~~h-~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~-----~~~-~g~ 195 (617)
+.+|+|+-.+-.. ..+...| +|..-..- ++...++..+|+|=|. ..|+||..+++-.. +.. -+-
T Consensus 73 ~~~~~y~~~~~~~Pk~i~~~g-~p~~~~~idaa~~~~~g~~Y~FkG~-------~y~ryd~~~~~v~~gyPk~i~~~w~g 144 (195)
T d1itva_ 73 RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSGR-------RLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEETT-------EEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred CEEEEEcCccccCCEEhhhcC-CCCCchheeeEEEcCCCeEEEEecc-------EEEEEeCCcccccCCCccchhhhcCC
Confidence 3578887432111 1222112 23322222 2333343349999663 48999987764321 110 111
Q ss_pred CCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCC
Q 007111 196 HPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 196 ~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
+|. .-.++...++++|++-| ..-|+||..+.
T Consensus 145 vp~--~idaAf~~~~~~Yffkg-------~~y~r~~~~~~ 175 (195)
T d1itva_ 145 VPL--DTHDVFQFREKAYFCQD-------RFYWRVSSRSE 175 (195)
T ss_dssp SCS--SCSEEEEETTEEEEEET-------TEEEEEECCTT
T ss_pred CCC--CCcEEEEeCCcEEEEEC-------CEEEEEcCCce
Confidence 232 23455556899999977 35788886544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=5.2 Score=35.05 Aligned_cols=188 Identities=11% Similarity=0.150 Sum_probs=94.2
Q ss_pred EEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEEC
Q 007111 52 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 131 (617)
Q Consensus 52 ~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~ 131 (617)
++..+++.++.||.+. .+.+||+.+.+-...- ........++..++.+++.||.++ .+.+++.
T Consensus 20 c~~~d~~~l~sgs~Dg------~i~vWd~~~~~~~~~l-----~~H~~~V~~v~~~~~~l~s~s~D~------~i~~~~~ 82 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDN------TIKIWDKNTLECKRIL-----TGHTGSVLCLQYDERVIITGSSDS------TVRVWDV 82 (293)
T ss_dssp EEECCSSEEEEEESSS------CEEEEESSSCCEEEEE-----CCCSSCEEEEECCSSEEEEEETTS------CEEEEES
T ss_pred EEEEcCCEEEEEeCCC------eEEEEECCCCcEEEEE-----ecCCCCEeeeecccceeecccccc------ccccccc
Confidence 3456777788887642 4778888776643321 111122234445777778887654 3788888
Q ss_pred CCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEEC
Q 007111 132 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCG 209 (617)
Q Consensus 132 ~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~~~~g~~P~~R~~ha~v~~~ 209 (617)
.......... .............. .++.++..+ .+..||..+.. ....... .............
T Consensus 83 ~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 148 (293)
T d1p22a2 83 NTGEMLNTLI-----HHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMASPTDITLRRVLV---GHRAAVNVVDFDD 148 (293)
T ss_dssp SSCCEEEEEC-----CCCSCEEEEECCTT-EEEEEETTS-----CEEEEECSSSSCCEEEEEEC---CCSSCEEEEEEET
T ss_pred cccccccccc-----cccccccccccccc-ceeeccccc-----ceeEeecccccccccccccc---ccccccccceecc
Confidence 8887665531 11112223333444 344444432 36667765433 1111111 1112122223335
Q ss_pred CEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCC
Q 007111 210 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 289 (617)
Q Consensus 210 ~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~ 289 (617)
..++..++ . ..+..+|+.+..-....... ......+... +..++.|+.++ .|.+||+.+.
T Consensus 149 ~~~~~~s~-d-----~~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~----~~~l~~~~~dg----~i~i~d~~~~ 208 (293)
T d1p22a2 149 KYIVSASG-D-----RTIKVWNTSTCEFVRTLNGH------KRGIACLQYR----DRLVVSGSSDN----TIRLWDIECG 208 (293)
T ss_dssp TEEEEEET-T-----SEEEEEETTTCCEEEEEECC------SSCEEEEEEE----TTEEEEEETTS----CEEEEETTTC
T ss_pred cccccccC-C-----CceeeecCCCCcEEEEEccc------ccccccccCC----CCeEEEecCCC----EEEEEecccc
Confidence 55544443 2 35788888776543321111 1112222222 33566777654 5788888776
Q ss_pred c
Q 007111 290 E 290 (617)
Q Consensus 290 ~ 290 (617)
.
T Consensus 209 ~ 209 (293)
T d1p22a2 209 A 209 (293)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=90.47 E-value=3.8 Score=37.77 Aligned_cols=145 Identities=9% Similarity=0.036 Sum_probs=78.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
..+++||..+.....++. +.+..+..-.-+++.++++|... -..++++|..+.....+. .
T Consensus 24 g~v~v~d~~~~~~~~~~~-------------~~~v~~~~~spDg~~l~~~~~~~----g~~v~v~d~~~~~~~~~~---~ 83 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPE-------------PLRIRYVRRGGDTKVAFIHGTRE----GDFLGIYDYRTGKAEKFE---E 83 (360)
T ss_dssp TEEEEECTTSSBEEECSC-------------CSCEEEEEECSSSEEEEEEEETT----EEEEEEEETTTCCEEECC---C
T ss_pred CeEEEEECCCCcEEEccC-------------CCCEEEEEECCCCCEEEEEEcCC----CCEEEEEECCCCcEEEee---C
Confidence 479999999988877653 12222222222677666665422 135899999998877664 1
Q ss_pred CCCCcceeEEEE-ECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC--
Q 007111 94 IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-- 170 (617)
Q Consensus 94 ~P~~R~~~s~~~-~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~-- 170 (617)
.... -..++. -+++.+++++.+ ..++.++..+.....+. ..........+..-+++ .+++++...
T Consensus 84 -~~~~-v~~~~~spdg~~l~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~-~la~~~~~~~~ 151 (360)
T d1k32a3 84 -NLGN-VFAMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIE---RSREAMITDFTISDNSR-FIAYGFPLKHG 151 (360)
T ss_dssp -CCCS-EEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEE---ECSSSCCCCEEECTTSC-EEEEEEEECSS
T ss_pred -CCce-EEeeeecccccccceeccc------cccccccccccceeeee---ecccccccchhhcccee-eeeeecccccc
Confidence 1111 222222 255666666543 35889999888765553 11222222233333555 444433221
Q ss_pred ---CCCCCeEEEEECCCCcEEEe
Q 007111 171 ---SKTLNDLYSLDFETMIWTRI 190 (617)
Q Consensus 171 ---~~~~n~v~~yD~~t~~W~~~ 190 (617)
......++.||..++.-..+
T Consensus 152 ~~~~~~~~~~~v~d~~~~~~~~~ 174 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEGRKIFAA 174 (360)
T ss_dssp TTCSCCEEEEEEEETTTTEEEEC
T ss_pred ceeeccccceeeeccccCceeee
Confidence 12234588899987754433
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=5.5 Score=34.90 Aligned_cols=210 Identities=11% Similarity=0.149 Sum_probs=100.4
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 94 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~ 94 (617)
.|.+||+.+.+-...-. .... .-..+.+++++++.||.+. .+..+++..........
T Consensus 36 ~i~vWd~~~~~~~~~l~------------~H~~-~V~~v~~~~~~l~s~s~D~------~i~~~~~~~~~~~~~~~---- 92 (293)
T d1p22a2 36 TIKIWDKNTLECKRILT------------GHTG-SVLCLQYDERVIITGSSDS------TVRVWDVNTGEMLNTLI---- 92 (293)
T ss_dssp CEEEEESSSCCEEEEEC------------CCSS-CEEEEECCSSEEEEEETTS------CEEEEESSSCCEEEEEC----
T ss_pred eEEEEECCCCcEEEEEe------------cCCC-CEeeeecccceeecccccc------ccccccccccccccccc----
Confidence 48888887766432211 0001 1223455777777777632 47788888877655542
Q ss_pred CCCcceeEEEEECCEEEEEeecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCC
Q 007111 95 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 172 (617)
Q Consensus 95 P~~R~~~s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~ 172 (617)
.... ...........++.++.. ..+..+|..+.. ..... ................ ..+.++.+
T Consensus 93 ~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~~~s~d--- 157 (293)
T d1p22a2 93 HHCE-AVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRV----LVGHRAAVNVVDFDDK-YIVSASGD--- 157 (293)
T ss_dssp CCCS-CEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEE----ECCCSSCEEEEEEETT-EEEEEETT---
T ss_pred cccc-ccccccccccceeecccc------cceeEeecccccccccccc----ccccccccccceeccc-ccccccCC---
Confidence 1111 112222223333333332 235566665543 11111 1111111222333444 34444444
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCc
Q 007111 173 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNK 252 (617)
Q Consensus 173 ~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~ 252 (617)
..+..||+.+......... .......+..++..++.|+..+ .+.+||+.+........... .
T Consensus 158 --~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~------~ 219 (293)
T d1p22a2 158 --RTIKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSDN-----TIRLWDIECGACLRVLEGHE------E 219 (293)
T ss_dssp --SEEEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEEECCCS------S
T ss_pred --CceeeecCCCCcEEEEEcc-----cccccccccCCCCeEEEecCCC-----EEEEEecccceeeeeecccc------e
Confidence 3488899987765433221 1111222333455566666543 37889988776554431111 1
Q ss_pred ceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 253 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 253 ~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
....... ....++.|+.++ .|.+||+..
T Consensus 220 ~v~~~~~----~~~~l~sg~~dg----~i~iwd~~~ 247 (293)
T d1p22a2 220 LVRCIRF----DNKRIVSGAYDG----KIKVWDLVA 247 (293)
T ss_dssp CEEEEEC----CSSEEEEEETTS----CEEEEEHHH
T ss_pred eeeeccc----cceEEEEEcCCC----EEEEEECCC
Confidence 1112111 244667787754 577887643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.00 E-value=9 Score=35.66 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=76.5
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 186 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~ 186 (617)
++.+++.|+.++ .+.++|..+.++..... + .... -.......+...++.|+.++ .+..||..+..
T Consensus 132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~-~--h~~~-v~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~ 196 (388)
T d1erja_ 132 DGKFLATGAEDR------LIRIWDIENRKIVMILQ-G--HEQD-IYSLDYFPSGDKLVSGSGDR-----TVRIWDLRTGQ 196 (388)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC-C--CSSC-EEEEEECTTSSEEEEEETTS-----EEEEEETTTTE
T ss_pred CCCcceeccccc------ccccccccccccccccc-c--cccc-ccccccccccccccccccce-----eeeeeeccccc
Confidence 456777777654 37889988887665421 1 1111 11222223332566665543 48889988776
Q ss_pred EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCC-CcceEEEEEeecC
Q 007111 187 WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS-NKGFTLVLVQHKE 263 (617)
Q Consensus 187 W~~~~~~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~-r~~~s~v~v~~~~ 263 (617)
....... . .....++.. ++.+++.|+..+ .+.+||..+................ ......+.+..
T Consensus 197 ~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-- 264 (388)
T d1erja_ 197 CSLTLSI---E--DGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-- 264 (388)
T ss_dssp EEEEEEC---S--SCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECT--
T ss_pred ccccccc---c--cccccccccCCCCCeEEEEcCCC-----eEEEeecccCccceeeccccccccCCCCCEEEEEECC--
Confidence 5554432 1 111222222 556777776553 4888998877654432211111111 12223333332
Q ss_pred CcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 264 KDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 264 ~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
++.+++.|+.++ .|.+||+....
T Consensus 265 ~~~~l~s~~~d~----~i~iwd~~~~~ 287 (388)
T d1erja_ 265 DGQSVVSGSLDR----SVKLWNLQNAN 287 (388)
T ss_dssp TSSEEEEEETTS----EEEEEEC----
T ss_pred CCCEEEEEECCC----cEEEEeccCCc
Confidence 234666777653 67888876554
|
| >d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Endo-alpha-sialidase domain: Endo-alpha-sialidase species: Bacteriophage K1F [TaxId: 344021]
Probab=87.70 E-value=6.3 Score=37.41 Aligned_cols=117 Identities=14% Similarity=0.251 Sum_probs=67.1
Q ss_pred ceEEEEECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCc--ceeEEEEECCEEEEEeecCCCC------
Q 007111 49 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR--SGHTVVRASSVLILFGGEDGKR------ 120 (617)
Q Consensus 49 ~hs~v~~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R--~~~s~~~~~~~IYv~GG~~~~~------ 120 (617)
..|+-..++-+|+.--.+-+...-+++.+-.-....|..+. .|... +..-.+-+++.+|+||.....+
T Consensus 337 epcvk~y~gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lr----fp~nvhhsnlpfakvgd~l~ifgsera~~ewe~ga 412 (516)
T d1v0ea1 337 EPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGA 412 (516)
T ss_dssp EEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTC
T ss_pred CchhhhcCCEEEEEeccccCCCCCccceeccccccChhhcc----CCccccccCCChhhcCCeEEEecccccccccccCC
Confidence 35566789999998633233333456666666677899886 34332 2333567899999999753211
Q ss_pred -------CccCeEE-EEEC-----CCCcEEEeec---CCCCCCCCcccEEEEECCc-EEEEEccCC
Q 007111 121 -------RKLNDLH-MFDL-----KSLTWLPLHC---TGTGPSPRSNHVAALYDDK-NLLIFGGSS 169 (617)
Q Consensus 121 -------~~~~~v~-~yD~-----~t~~W~~l~~---~g~~P~~R~~h~a~~~~~~-~LyV~GG~~ 169 (617)
.+-..++ +.++ +.-+|-.+.. .|.+--.-.+-.++++++. ..|||||.+
T Consensus 413 pd~ry~~syprtf~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged 478 (516)
T d1v0ea1 413 PDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 478 (516)
T ss_dssp CCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECC
T ss_pred CccccccCCCceEEEEEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCcc
Confidence 1222222 2333 3345776632 1333333345556666655 458999964
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.08 E-value=4.4 Score=35.95 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=77.3
Q ss_pred EEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC---CCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeE
Q 007111 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDL 177 (617)
Q Consensus 102 s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v 177 (617)
+++.++|.+|+|=| .-+|+++.....+.....+ ..+|... . ++... .+..+|+|-|. .+
T Consensus 13 Av~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~i~~~w~~lp~~I-D-AAf~~~~~~~~yffkg~-------~~ 75 (192)
T d1pexa_ 13 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPNRI-D-AAYEHPSHDLIFIFRGR-------KF 75 (192)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCSSC-C-EEEEETTTTEEEEEETT-------EE
T ss_pred EEEEcCCeEEEEEC--------CEEEEEcCCCCCCcccchhhhCcCCCCcc-c-ceEEEcCCCEEEEEcCC-------EE
Confidence 46678899999954 2356665544444332211 2344332 2 33333 34448888774 37
Q ss_pred EEEECCCCcEE---EeecCCCCCCC-CcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEEE-----eecCCCC
Q 007111 178 YSLDFETMIWT---RIKIRGFHPSP-RAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV-----AITSPSS 246 (617)
Q Consensus 178 ~~yD~~t~~W~---~~~~~g~~P~~-R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~-----l~~~~~~ 246 (617)
|+|+-.+..+- .+...+ .|.+ ..--++... ++++|++-| +..|+||.....-.. +...=..
T Consensus 76 w~y~~~~~~~gyPk~i~~~~-~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~g 147 (192)
T d1pexa_ 76 WALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPG 147 (192)
T ss_dssp EEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTT
T ss_pred EEEcCCcccCCCCeEeeeee-cCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCCC
Confidence 88875543331 111111 1111 111233332 689999977 458999987653211 1000000
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.+.+ .-++. .. ++++|+|-|. ..++||..+.+
T Consensus 148 -vp~~--vdAa~-~~--~g~~YfF~g~------~y~r~~~~~~~ 179 (192)
T d1pexa_ 148 -IGDK--VDAVY-EK--NGYIYFFNGP------IQFEYSIWSNR 179 (192)
T ss_dssp -SCSC--CSEEE-EE--TTEEEEEETT------EEEEEETTTTE
T ss_pred -CCCC--ceEEE-Ee--CCEEEEEECC------EEEEEeCCcCe
Confidence 1111 22223 22 4678888775 67888877654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=86.67 E-value=10 Score=33.61 Aligned_cols=234 Identities=10% Similarity=0.060 Sum_probs=114.0
Q ss_pred eEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCC
Q 007111 15 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 93 (617)
Q Consensus 15 ~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~-g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~ 93 (617)
++|++|+.+..-..+... +.....-...- |.+|...... ........+|+++..+.....+...+.
T Consensus 22 dl~~~d~~~g~~~~Lt~~------------~~~~~~p~~SPDG~~iaf~~~~-~~~~~~~~i~~~~~~~g~~~~lt~~~~ 88 (281)
T d1k32a2 22 DLWEHDLKSGSTRKIVSN------------LGVINNARFFPDGRKIAIRVMR-GSSLNTADLYFYNGENGEIKRITYFSG 88 (281)
T ss_dssp EEEEEETTTCCEEEEECS------------SSEEEEEEECTTSSEEEEEEEE-STTCCEEEEEEEETTTTEEEECCCCCE
T ss_pred cEEEEECCCCCEEEEecC------------CCcccCEEECCCCCEEEEEEee-CCCCCceEEEEEEecCCceEEeeecCC
Confidence 799999999888877651 11211111122 4455544322 223334679999999999888853211
Q ss_pred C-CCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCC
Q 007111 94 I-PVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 170 (617)
Q Consensus 94 ~-P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~ 170 (617)
. ...+........ +++.+++.-..........++..+.......... ..... .....++..++.+.....
T Consensus 89 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~ 161 (281)
T d1k32a2 89 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN------LGPAT-HILFADGRRVIGRNTFEL 161 (281)
T ss_dssp EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC------SCSCS-EEEEETTEEEEEESCSCC
T ss_pred CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec------CCccc-eeeecCCCeEEEeecccc
Confidence 0 011112222222 4444444333332223455677777776666542 11111 333444443444433321
Q ss_pred CC------CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCC
Q 007111 171 SK------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP 244 (617)
Q Consensus 171 ~~------~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~ 244 (617)
.. ..............-...... ..........++.++......+ ...+|.+|+.+...+.+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~d~~g~~~~~lt~~~ 233 (281)
T d1k32a2 162 PHWKGYRGGTRGKIWIEVNSGAFKKIVDM-----STHVSSPVIVGHRIYFITDIDG---FGQIYSTDLDGKDLRKHTSFT 233 (281)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECC-----SSCCEEEEEETTEEEEEECTTS---SCEEEEEETTSCSCEECCCCC
T ss_pred ceeeeeccCCcceeeeeccccceeeccCC-----ccccceeeeeccccceeccccc---ccceEEEeCCCCceEEeecCC
Confidence 11 111222222222222222221 2222233445676666654333 257999999988877764211
Q ss_pred CCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCcc
Q 007111 245 SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 291 (617)
Q Consensus 245 ~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~W 291 (617)
. .. ...+..+++..+|..|| ++|++|+.+.+-
T Consensus 234 ~-------~~-~~~~SpDG~~I~f~~~~-------~l~~~d~~~g~~ 265 (281)
T d1k32a2 234 D-------YY-PRHLNTDGRRILFSKGG-------SIYIFNPDTEKI 265 (281)
T ss_dssp S-------SC-EEEEEESSSCEEEEETT-------EEEEECTTTCCE
T ss_pred C-------cc-cccCcCCCCEEEEEeCC-------EEEEEECCCCCE
Confidence 1 11 11233344444443433 799999998874
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.45 E-value=11 Score=33.02 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=70.4
Q ss_pred CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEE-EECCcEEEEEccCCCCCCCCeEEEEECCCC
Q 007111 107 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA-LYDDKNLLIFGGSSKSKTLNDLYSLDFETM 185 (617)
Q Consensus 107 ~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~-~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~ 185 (617)
++..++.++.+. .+.+||..+......-. +. .....++ ...+..+++.|+.++. +..|+..+.
T Consensus 112 ~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~~~d~~-----v~~~~~~~~ 175 (317)
T d1vyhc1 112 NGDHIVSASRDK------TIKMWEVQTGYCVKTFT-GH----REWVRMVRPNQDGTLIASCSNDQT-----VRVWVVATK 175 (317)
T ss_dssp SSSEEEEEETTS------EEEEEETTTCCEEEEEE-CC----SSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTC
T ss_pred CCceEEeeccCc------ceeEeecccceeeeEEc-cC----CCcceeeecccCCCEEEEEeCCCe-----EEEEeeccc
Confidence 445555555433 46788888877554311 11 1112222 2233336777776543 777777665
Q ss_pred cEEEeecCCC--------CCCC---------CcceEEEEECCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCC
Q 007111 186 IWTRIKIRGF--------HPSP---------RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 248 (617)
Q Consensus 186 ~W~~~~~~g~--------~P~~---------R~~ha~v~~~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p 248 (617)
.....-.... .|.. ..........+.+++.|+.. ..+..||+.+......-..
T Consensus 176 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~~~~~~----- 245 (317)
T d1vyhc1 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCLMTLVG----- 245 (317)
T ss_dssp CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEEEEEEC-----
T ss_pred eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC-----CEEEEEECCCCcEEEEEeC-----
Confidence 5443211000 0000 00011111234455555543 3478888887764332110
Q ss_pred CCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 249 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 249 ~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.......+.+.. ++.+++.||.++ .|.+||+.+.+
T Consensus 246 -~~~~v~~~~~~~--~~~~l~s~~~dg----~i~iwd~~~~~ 280 (317)
T d1vyhc1 246 -HDNWVRGVLFHS--GGKFILSCADDK----TLRVWDYKNKR 280 (317)
T ss_dssp -CSSCEEEEEECS--SSSCEEEEETTT----EEEEECCTTSC
T ss_pred -CCCCEEEEEECC--CCCEEEEEECCC----eEEEEECCCCc
Confidence 111223333332 244666777653 68889987654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=85.41 E-value=7.3 Score=35.19 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=55.1
Q ss_pred CeEEEEECCCCcE-EEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCC-CC
Q 007111 124 NDLHMFDLKSLTW-LPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS-PR 200 (617)
Q Consensus 124 ~~v~~yD~~t~~W-~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~-~R 200 (617)
+.+.+||..+.+- ..++... .+..-+..++. +++++|+.|+.+ +.|..||..+++............ ..
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~---~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred CEEEEEECCCCeEEEEEECCC---CCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecCCCccccc
Confidence 5689999998763 3342111 11111233333 566788887654 359999999988765433211110 11
Q ss_pred cceEEEEE--CCEEEEEecCCCC------CccceEEEEECCCCcEE
Q 007111 201 AGCCGVLC--GTKWYIAGGGSRK------KRHAETLIFDILKGEWS 238 (617)
Q Consensus 201 ~~ha~v~~--~~~IyI~GG~s~~------~~~~~v~~yDl~~~~W~ 238 (617)
..+.++.. ++.+|+.+..... .....+..+|..+..-.
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE
Confidence 11122222 4456555432110 12245678888876543
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.43 E-value=12 Score=32.94 Aligned_cols=153 Identities=10% Similarity=0.074 Sum_probs=75.7
Q ss_pred EEEEECCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecC---CCCCCCCcccEEEEEC-CcEEEEEccCCCCCCCCeE
Q 007111 102 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDL 177 (617)
Q Consensus 102 s~~~~~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~h~a~~~~-~~~LyV~GG~~~~~~~n~v 177 (617)
+++.+++.+|+|-|. -+|+++.....+...... ..+|.... ++.... +..+|+|-|. ..
T Consensus 16 Av~~~~G~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~glp~~ID--AAf~~~~~~~~yfFkG~-------~y 78 (195)
T d1su3a2 16 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNGLE--AAYEFADRDEVRFFKGN-------KY 78 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSSCC--EEEEEGGGTEEEEEETT-------EE
T ss_pred EEEEcCCeEEEEeCC--------EEEEeeCCCCccCccchHhhCcCCCCccc--ceEEecCCcEEEEECCc-------EE
Confidence 566789999999653 234444433333221111 13444332 344342 2348888774 48
Q ss_pred EEEECCCCcE---EEeec-CCCCCCCCcceEEEEE--CCEEEEEecCCCCCccceEEEEECCCCcEE-----EeecCCCC
Q 007111 178 YSLDFETMIW---TRIKI-RGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS-----VAITSPSS 246 (617)
Q Consensus 178 ~~yD~~t~~W---~~~~~-~g~~P~~R~~ha~v~~--~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~-----~l~~~~~~ 246 (617)
|+|+-.+..+ ..+.. .|.+.....--++... ++++|+|-| +..|+||..+..-. .+...=..
T Consensus 79 ~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w~G 151 (195)
T d1su3a2 79 WAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPG 151 (195)
T ss_dssp EEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTT
T ss_pred EEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCcccccccccCC
Confidence 8887432211 11110 1111111111123333 579999988 46899998775321 11100001
Q ss_pred CCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCCCc
Q 007111 247 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 290 (617)
Q Consensus 247 ~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~~~ 290 (617)
.| .+ .-++... ++.+|+|-|. ..|.||..+.+
T Consensus 152 vp-~~--iDAAf~~---~g~~YfFkg~------~y~r~~~~~~~ 183 (195)
T d1su3a2 152 IG-HK--VDAVFMK---DGFFYFFHGT------RQYKFDPKTKR 183 (195)
T ss_dssp SC-SC--CSEEEEE---TTEEEEEETT------EEEEEETTTTE
T ss_pred CC-CC--ccEEEEE---CCeEEEEECC------EEEEEeCCcCE
Confidence 11 12 2233332 3678888875 67889886654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=83.43 E-value=15 Score=35.91 Aligned_cols=139 Identities=17% Similarity=0.086 Sum_probs=71.3
Q ss_pred eEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE-CC-EEEEEeecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCc
Q 007111 73 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 150 (617)
Q Consensus 73 ~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~-~~-~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 150 (617)
..+.++|..+.+-...- +.....|.++.- ++ ++|+ ++.+ ..+.++|..+.+-..+. .++....
T Consensus 42 g~v~v~D~~t~~v~~~~-----~~g~~~~~v~fSpDG~~l~~-~s~d------g~v~~~d~~t~~~~~~~---~i~~~~~ 106 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVL-----DTGYAVHISRLSASGRYLFV-IGRD------GKVNMIDLWMKEPTTVA---EIKIGSE 106 (432)
T ss_dssp TEEEEEETTTCCEEEEE-----ECSSCEEEEEECTTSCEEEE-EETT------SEEEEEETTSSSCCEEE---EEECCSE
T ss_pred CEEEEEECCCCcEEEEE-----eCCCCeeEEEECCCCCEEEE-EcCC------CCEEEEEeeCCCceEEE---EEecCCC
Confidence 36888898887754432 222233444332 44 5554 4543 35889998877643321 1222222
Q ss_pred ccEEEEE-----CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCC--------CCCCCCcceEEEEECC-EEEEEe
Q 007111 151 NHVAALY-----DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG--------FHPSPRAGCCGVLCGT-KWYIAG 216 (617)
Q Consensus 151 ~h~a~~~-----~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g--------~~P~~R~~ha~v~~~~-~IyI~G 216 (617)
....+.. +++++|+.+..+ +.+.+||..+.+........ ..+.++....+...++ .+|+..
T Consensus 107 ~~~~~~s~~~SpDG~~l~vs~~~~-----~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~ 181 (432)
T d1qksa2 107 ARSIETSKMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181 (432)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCCeEEecccCCCCCEEEEEcCCC-----CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence 2222221 566677766554 35899999988776553311 0123332221222233 444443
Q ss_pred cCCCCCccceEEEEECCCCc
Q 007111 217 GGSRKKRHAETLIFDILKGE 236 (617)
Q Consensus 217 G~s~~~~~~~v~~yDl~~~~ 236 (617)
... ..++.+|..+..
T Consensus 182 ~~~-----~~i~~~d~~~~~ 196 (432)
T d1qksa2 182 KET-----GKILLVDYTDLN 196 (432)
T ss_dssp TTT-----TEEEEEETTCSS
T ss_pred ccC-----CeEEEEEccCCC
Confidence 322 457888876654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.27 E-value=27 Score=35.71 Aligned_cols=120 Identities=10% Similarity=0.171 Sum_probs=68.5
Q ss_pred EEECCEEEEEcccCCCCCCceEEEEEECC-CC--cEEEeeccCCCCCCc--------ceeEEEEECCEEEEEeecCCCCC
Q 007111 53 ISWGKKVLLVGGKTDSGSDRVSVWTFDTE-TE--CWSVVEAKGDIPVAR--------SGHTVVRASSVLILFGGEDGKRR 121 (617)
Q Consensus 53 v~~g~~lyV~GG~~~~~~~~~~v~~yd~~-t~--~W~~~~~~g~~P~~R--------~~~s~~~~~~~IYv~GG~~~~~~ 121 (617)
+++++.|||..+.. ..++.+|.. |. .|+.-+. .+... ....++..+++||+..
T Consensus 59 ~v~~g~vyv~t~~~------~~v~Alda~~tG~~~W~~~~~---~~~~~~~~~~~~~~~rg~a~~~~~i~~~~------- 122 (571)
T d2ad6a1 59 LVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPK---QDASTKAVMCCDVVDRGLAYGAGQIVKKQ------- 122 (571)
T ss_dssp EEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCC---CCGGGGGGCTTCSCCCCCEEETTEEEEEC-------
T ss_pred EEECCEEEEecCCC------CeEEEEeCCCCCceEEEecCC---CCcccccccccCcCCCcceeeCCeEEEEe-------
Confidence 45799999986531 248888864 44 4876431 11111 1123466788888752
Q ss_pred ccCeEEEEECCCCc--EEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCc--EEEe
Q 007111 122 KLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 190 (617)
Q Consensus 122 ~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~--W~~~ 190 (617)
....++.+|..+.+ |..-.. ..-+......+-+++++. +|+-+......+...|..||..|++ |+..
T Consensus 123 ~~g~l~alda~tG~~~w~~~~~-~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 123 ANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCCcEEeeehhhhhhhcccccc-ccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 12468999999986 875311 111111222234566776 6554332233345679999998764 7654
|
| >d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: tRNA-binding arm family: Seryl-tRNA synthetase (SerRS) domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=82.19 E-value=4.1 Score=32.76 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=33.7
Q ss_pred HhchhhHhHHHHhhcHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHhH-HhhhcccccccCC
Q 007111 481 KNGILEGQLAAALVNREAAEKNFSSV-LKSRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 551 (617)
Q Consensus 481 ~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lkek~~~~e~~q-e~~~~~~~~~~~~ 551 (617)
+.-.|..+++...+.+-++.|..... =..++++.+++..+-.++..|.+++..+|..- +-.-+|-||+|++
T Consensus 36 ~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~~~ 108 (110)
T d1seta1 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPG 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 33344455555555555555544321 11233333333333344444444444443222 3445689999975
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=81.81 E-value=25 Score=34.21 Aligned_cols=186 Identities=12% Similarity=0.107 Sum_probs=95.9
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
+.+.++|..+++-...-+ ... .-|+++.- |.++|+. +.+ ..+.++|+.+..-....
T Consensus 42 g~v~v~D~~t~~v~~~~~------------~g~-~~~~v~fSpDG~~l~~~-s~d------g~v~~~d~~t~~~~~~~-- 99 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVLD------------TGY-AVHISRLSASGRYLFVI-GRD------GKVNMIDLWMKEPTTVA-- 99 (432)
T ss_dssp TEEEEEETTTCCEEEEEE------------CSS-CEEEEEECTTSCEEEEE-ETT------SEEEEEETTSSSCCEEE--
T ss_pred CEEEEEECCCCcEEEEEe------------CCC-CeeEEEECCCCCEEEEE-cCC------CCEEEEEeeCCCceEEE--
Confidence 468889998887644332 111 12444333 4466654 331 26888998877643332
Q ss_pred CCCCCCcceeEEEEE------CCEEEEEeecCCCCCccCeEEEEECCCCcEEEeecCC--------CCCCCCcccEEEEE
Q 007111 92 GDIPVARSGHTVVRA------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG--------TGPSPRSNHVAALY 157 (617)
Q Consensus 92 g~~P~~R~~~s~~~~------~~~IYv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g--------~~P~~R~~h~a~~~ 157 (617)
.++........+.. +.++|+.+.. ...+.+||..+.+-....... ..+.++....+...
T Consensus 100 -~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 172 (432)
T d1qksa2 100 -EIKIGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH 172 (432)
T ss_dssp -EEECCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred -EEecCCCCCCeEEecccCCCCCEEEEEcCC------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence 12222222222221 3467776543 245889999988766542110 01223322222233
Q ss_pred CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEecCCCCCccceEEEEECCCC
Q 007111 158 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGGGSRKKRHAETLIFDILKG 235 (617)
Q Consensus 158 ~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v~~-~~~-IyI~GG~s~~~~~~~v~~yDl~~~ 235 (617)
++..+++..... +.++.+|..+..-..+... +.+..-+.++.. +++ +|+.++.. +.+..+|..+.
T Consensus 173 dg~~~~vs~~~~-----~~i~~~d~~~~~~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~~-----~~v~v~d~~~~ 239 (432)
T d1qksa2 173 YRPEFIVNVKET-----GKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANAR-----NKLVVIDTKEG 239 (432)
T ss_dssp SSSEEEEEETTT-----TEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGGG-----TEEEEEETTTT
T ss_pred CCCEEEEEEccC-----CeEEEEEccCCCcceEEEE---cccCccccceECCCCCEEEEecccc-----ceEEEeecccc
Confidence 455455544332 4588898877654444332 334444455544 444 44444322 45788888877
Q ss_pred cEEEee
Q 007111 236 EWSVAI 241 (617)
Q Consensus 236 ~W~~l~ 241 (617)
......
T Consensus 240 ~~~~~~ 245 (432)
T d1qksa2 240 KLVAIE 245 (432)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 655443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=81.41 E-value=21 Score=33.21 Aligned_cols=229 Identities=10% Similarity=0.068 Sum_probs=114.6
Q ss_pred ceEEEEECCCCcEEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEcccCCCCCCceEEEEEECCCCcEEEeecc
Q 007111 14 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 91 (617)
Q Consensus 14 ~~v~~yd~~t~~W~~l~~~~~~~p~~~~~~~p~r~~hs~v~~--g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 91 (617)
..+++||+.+..+........ ....-.-+.++.. ++.+|+..+. ..+.++|+.......+...
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~--------~~~~g~P~Gl~~~~dg~~l~vad~~-------~~i~~~~~~g~~~~~~~~~ 110 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEV--------NGYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTDGTFEEIAKKD 110 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEE--------TTEECCEEEEEECSSSSEEEEEETT-------TEEEEEETTSCEEECCSBC
T ss_pred CEEEEEECCCCcEEEEECCcc--------ccCCCcceeEEEeCCCCEEEEEECC-------CeEEEEeCCCcEEEEEecc
Confidence 458999999998876653100 0000012334443 4578887543 2588999887765544322
Q ss_pred CCCCCCcceeEEEEE-CCEEEEEe--ecCC-------CCCccCeEEEEECCCCcEEEeecCCCCCCCCcccEEEEE-C-C
Q 007111 92 GDIPVARSGHTVVRA-SSVLILFG--GEDG-------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-D-D 159 (617)
Q Consensus 92 g~~P~~R~~~s~~~~-~~~IYv~G--G~~~-------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~-~-~ 159 (617)
..-...+....++.. ++.||+-. |... .......+|++++.. ++..+. ..+..+ -..++. + +
T Consensus 111 ~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~--~~~~~p---NGi~~~~d~d 184 (314)
T d1pjxa_ 111 SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVD--TAFQFP---NGIAVRHMND 184 (314)
T ss_dssp TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEE--EEESSE---EEEEEEECTT
T ss_pred ccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEee--CCccee---eeeEECCCCC
Confidence 111112222334333 47888853 2111 111345688998754 455543 122222 122222 2 2
Q ss_pred ---cEEEEEccCCCCCCCCeEEEEECCCCc---EEEe-ecCCCCCCC-Ccce-EEEEE-CCEEEEEecCCCCCccceEEE
Q 007111 160 ---KNLLIFGGSSKSKTLNDLYSLDFETMI---WTRI-KIRGFHPSP-RAGC-CGVLC-GTKWYIAGGGSRKKRHAETLI 229 (617)
Q Consensus 160 ---~~LyV~GG~~~~~~~n~v~~yD~~t~~---W~~~-~~~g~~P~~-R~~h-a~v~~-~~~IyI~GG~s~~~~~~~v~~ 229 (617)
..||+..-. .+.|++||+.... +.++ ... +.. .... .++.. ++.|||..-.. +.+++
T Consensus 185 ~~~~~lyv~d~~-----~~~i~~~d~~~~g~~~~~~~~~~~---~~~~~~~pdGiavD~~GnlyVa~~~~-----g~I~~ 251 (314)
T d1pjxa_ 185 GRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHI---PGTHEGGADGMDFDEDNNLLVANWGS-----SHIEV 251 (314)
T ss_dssp SCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEEC---CCCSSCEEEEEEEBTTCCEEEEEETT-----TEEEE
T ss_pred cceeEEEEEeec-----ccceEEeeccCccccceeeEEEEc---cccccccceeeEEecCCcEEEEEcCC-----CEEEE
Confidence 146765432 3569999864332 2222 111 111 1122 33332 67899874222 46999
Q ss_pred EECCCCcEE-EeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEECCC
Q 007111 230 FDILKGEWS-VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 288 (617)
Q Consensus 230 yDl~~~~W~-~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd~~~ 288 (617)
||++..... .+. .+ ....+.+++.. +...|||.... .+.|+.++...
T Consensus 252 ~dp~~g~~~~~i~-~p------~~~~t~~afg~-d~~~lyVt~~~----~g~i~~~~~~~ 299 (314)
T d1pjxa_ 252 FGPDGGQPKMRIR-CP------FEKPSNLHFKP-QTKTIFVTEHE----NNAVWKFEWQR 299 (314)
T ss_dssp ECTTCBSCSEEEE-CS------SSCEEEEEECT-TSSEEEEEETT----TTEEEEEECSS
T ss_pred EeCCCCEEEEEEE-CC------CCCEEEEEEeC-CCCEEEEEECC----CCcEEEEECCC
Confidence 999876532 232 11 12334455543 34568886543 24788888644
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.20 E-value=19 Score=32.58 Aligned_cols=200 Identities=6% Similarity=-0.008 Sum_probs=103.1
Q ss_pred EEEE-ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCC-CCcceeEEEEEC--CEEEEEeecCCCCCccCeE
Q 007111 51 SLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRAS--SVLILFGGEDGKRRKLNDL 126 (617)
Q Consensus 51 s~v~-~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P-~~R~~~s~~~~~--~~IYv~GG~~~~~~~~~~v 126 (617)
.+++ -+++|||.-.. ...+.+||+..+.-..+++.+... ........+..+ +.+++.. .. ....+
T Consensus 27 gvavd~dg~i~VaD~~------n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~----~~~~i 95 (279)
T d1q7fa_ 27 GVAVNAQNDIIVADTN------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE-RS----PTHQI 95 (279)
T ss_dssp EEEECTTCCEEEEEGG------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE-CG----GGCEE
T ss_pred EEEEcCCCCEEEEECC------CCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceec-cC----Ccccc
Confidence 4444 36789998543 246899998754333343322211 122333444443 3333321 11 12457
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcccEEEEECCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 007111 127 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 206 (617)
Q Consensus 127 ~~yD~~t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ha~v 206 (617)
..++.....+.... .+....-+..++..+..+|+..... ..+++|++....-..+... ......+.++
T Consensus 96 ~~~~~~g~~~~~~~----~~~~~~p~~~avd~~G~i~v~~~~~-----~~~~~~~~~g~~~~~~g~~---~~~~~~~~i~ 163 (279)
T d1q7fa_ 96 QIYNQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCS---KHLEFPNGVV 163 (279)
T ss_dssp EEECTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECT---TTCSSEEEEE
T ss_pred ccccccccceeecC----CCcccccceeccccCCcEEEEeecc-----ceeeEeccCCceeeccccc---ccccccceee
Confidence 88888777777663 1222222334443333377775543 4588899876554444332 2222223333
Q ss_pred EE-CCEEEEEecCCCCCccceEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCCCCCCCeEEEEE
Q 007111 207 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLS 285 (617)
Q Consensus 207 ~~-~~~IyI~GG~s~~~~~~~v~~yDl~~~~W~~l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~~~~~~dV~vyd 285 (617)
.. ++.+|+..... ..+++||.....+..+.. +.. ......+.+.. .+.|||....+. ..|.+|+
T Consensus 164 ~d~~g~i~v~d~~~-----~~V~~~d~~G~~~~~~g~-~g~----~~~P~giavD~--~G~i~Vad~~~~---~~v~~f~ 228 (279)
T d1q7fa_ 164 VNDKQEIFISDNRA-----HCVKVFNYEGQYLRQIGG-EGI----TNYPIGVGINS--NGEILIADNHNN---FNLTIFT 228 (279)
T ss_dssp ECSSSEEEEEEGGG-----TEEEEEETTCCEEEEESC-TTT----SCSEEEEEECT--TCCEEEEECSSS---CEEEEEC
T ss_pred eccceeEEeeeccc-----cceeeeecCCceeeeecc-ccc----ccCCccccccc--CCeEEEEECCCC---cEEEEEC
Confidence 33 67899987643 468999988776655532 111 11122334432 345888754321 2577887
Q ss_pred CCC
Q 007111 286 IEK 288 (617)
Q Consensus 286 ~~~ 288 (617)
+..
T Consensus 229 ~~G 231 (279)
T d1q7fa_ 229 QDG 231 (279)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=81.11 E-value=22 Score=33.14 Aligned_cols=210 Identities=12% Similarity=0.058 Sum_probs=99.7
Q ss_pred CCEEEEEcccCC-CCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 56 GKKVLLVGGKTD-SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 56 g~~lyV~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
++++|+...... .......+++||+.+..+............-..+.++.. ++.+|+..+ .+.+.++|+.
T Consensus 28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~~~i~~~~~~ 100 (314)
T d1pjxa_ 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------RLGLLVVQTD 100 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------TTEEEEEETT
T ss_pred CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------CCeEEEEeCC
Confidence 578888743211 111224699999999988776521111111123344443 346777643 2458899988
Q ss_pred CCcEEEeecCCCCCCCCcccEEEEECCcEEEEEc--cCC--------CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 007111 133 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFG--GSS--------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 202 (617)
Q Consensus 133 t~~W~~l~~~g~~P~~R~~h~a~~~~~~~LyV~G--G~~--------~~~~~n~v~~yD~~t~~W~~~~~~g~~P~~R~~ 202 (617)
......+.........+.-...++-.+..+|+.. +.. .......+|++++.. ++..+... ...|. +
T Consensus 101 g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~--~~~pN-G 176 (314)
T d1pjxa_ 101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTA--FQFPN-G 176 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEE--ESSEE-E
T ss_pred CcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCC--cceee-e
Confidence 7665543211111111111223333333388763 211 112344689998753 56655431 11110 1
Q ss_pred eEEEEECC----EEEEEecCCCCCccceEEEEECCCCc---EEE-eecCCCCCCCCCcceEEEEEeecCCcEEEEEcCCC
Q 007111 203 CCGVLCGT----KWYIAGGGSRKKRHAETLIFDILKGE---WSV-AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 274 (617)
Q Consensus 203 ha~v~~~~----~IyI~GG~s~~~~~~~v~~yDl~~~~---W~~-l~~~~~~~p~~r~~~s~v~v~~~~~~~L~I~GG~~ 274 (617)
-+....++ .+|+..-. ...+|+||+.... +.. ....+.... .+.--..+. .++.|||..-.
T Consensus 177 i~~~~d~d~~~~~lyv~d~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~---~~pdGiavD--~~GnlyVa~~~- 245 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADGMDFD--EDNNLLVANWG- 245 (314)
T ss_dssp EEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEEEEEB--TTCCEEEEEET-
T ss_pred eEECCCCCcceeEEEEEeec-----ccceEEeeccCccccceeeEEEEcccccc---ccceeeEEe--cCCcEEEEEcC-
Confidence 11222222 57776432 2568898865431 221 111111111 111123333 34567775321
Q ss_pred CCCCCeEEEEECCCCc
Q 007111 275 KEPSNQVEVLSIEKNE 290 (617)
Q Consensus 275 ~~~~~dV~vyd~~~~~ 290 (617)
.+.|++||++...
T Consensus 246 ---~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 246 ---SSHIEVFGPDGGQ 258 (314)
T ss_dssp ---TTEEEEECTTCBS
T ss_pred ---CCEEEEEeCCCCE
Confidence 2479999998765
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=80.60 E-value=23 Score=32.98 Aligned_cols=119 Identities=12% Similarity=0.038 Sum_probs=61.3
Q ss_pred ECCEEEEEcccCCCCCCceEEEEEECCCCcEEEeeccCCCCCCcceeEEEEE--CCEEEEEeecCCCCCccCeEEEEECC
Q 007111 55 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 132 (617)
Q Consensus 55 ~g~~lyV~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~P~~R~~~s~~~~--~~~IYv~GG~~~~~~~~~~v~~yD~~ 132 (617)
-++++|+-.-..........++++++....+..+... +. ....++.- ++.+|+.-- ..+.+++||..
T Consensus 139 ~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~---~pnGia~s~dg~~lyvad~------~~~~I~~~d~~ 207 (319)
T d2dg1a1 139 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIALSTDEKVLWVTET------TANRLHRIALE 207 (319)
T ss_dssp TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEECTTSSEEEEEEG------GGTEEEEEEEC
T ss_pred eccceeecccccccccCcceeEEEecccceeEEEeec--cc---eeeeeeeccccceEEEecc------cCCceEEEEEc
Confidence 3678887532211222346799999988877766421 11 12233332 347888732 35679999876
Q ss_pred CCc---E---EEeecCCCCCCCCcccEEEEE-CCcEEEEEccCCCCCCCCeEEEEECCCCcEEEeec
Q 007111 133 SLT---W---LPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 192 (617)
Q Consensus 133 t~~---W---~~l~~~g~~P~~R~~h~a~~~-~~~~LyV~GG~~~~~~~n~v~~yD~~t~~W~~~~~ 192 (617)
... + ..... .......-..+++- +++ |||..-.. +.|.+||+....-..+..
T Consensus 208 ~~g~~~~~~~~~~~~--~~~~~~~PdGl~vD~~G~-l~Va~~~~-----g~V~~~~p~G~~l~~i~~ 266 (319)
T d2dg1a1 208 DDGVTIQPFGATIPY--YFTGHEGPDSCCIDSDDN-LYVAMYGQ-----GRVLVFNKRGYPIGQILI 266 (319)
T ss_dssp TTSSSEEEEEEEEEE--ECCSSSEEEEEEEBTTCC-EEEEEETT-----TEEEEECTTSCEEEEEEC
T ss_pred CCCceeccccceeee--ccCCccceeeeeEcCCCC-EEEEEcCC-----CEEEEECCCCcEEEEEeC
Confidence 431 1 11110 11111111234443 345 88874222 359999996554444443
|