Citrus Sinensis ID: 007121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------
Protein Sequence
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHcccEEEEEEcccccccccEEEEEccccHHHHHHHHHccccEEEEEccccccHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccEEccccccEEEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHcccHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHcccEEEEEcccccccccEEEEEEccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccEEccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEcccccccccHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccEEEEEEEEEccccccEEccccc
Coil and Loop (DISEMBL)
MGGDVTGTVTASvsapmastaERQYVTAKTSVwwdiencqvpkncdphtiAQNISSALVKmnycgpvsisaygdtnripaSVQHALSSTGialnhvpavdnpapsnyllisgdrdfSNALHQLRMRRYNILlaqphkasaPLVAAAKSVWLWTSLvaggpplasgesllhtndfgtfnpedepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqesknndysyQFEHSQqkqfkkapheffggtgeprsnpnffpchtdlsggngnnfsgnfrnqhllrpnnfpmqpnfpqdnflphnsqnhgfrpippssngprfppappanlpdigklnmseypnyaqncpnfhpqsgeelkssyfespnpaslnvpqkghampggqasnrdslnsrhsrgpegppsssssttfpassnggwgtqgrltpseYVQGLIGVILLALNTlkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSlgalplyvpkneklwncenlygnpnqypkEVWDRIQKFLtsssgrsaiMASQCRYEAALILKnsclpelalGEILKILNMVitpkkwiihhqsgwqpVTITLAEyksdsgseidsgsn
Flexible Loop (DISEMBL)
mggdvtgtvtasvsapmastaerqYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDepvqvsqpmgnsntgrvsdtklkgkytkkptnqpsisrvasapvpmqESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPegppsssssttfPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLkiervvpseanitdcirygepkhrntDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYksdsgseidsgsn
Low Complexity Region (SEG)
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLsggngnnfsgnfRNQHLLRpnnfpmqpnfpqdnfLPHNSQNHGFRpippssngprfppappanlpdigKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNsrhsrgpegppsssssttfpassNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Disordered region (IsUnstruct)
***********************QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL******************************************************************************************************************************************************************************************************************************************************************************RLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEY*************
Disordered Region (DISOPRED)
*****************************TSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFG*****************************************************************************************************************************************************************************************************************************************************************************GVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAE**************
Disordered Region (DISEMBL)
**********ASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQ**********KAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQK******************************************WGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYK************
Disordered Region (DISPRO)
*************************VTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLH**********************************************************************************************************************QHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNC******************************************SLN******P*************************LTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDS*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEPVQVSQPMGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDSGSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	617	2.2.26 [Sep-21-2011]
Q8BJ34	1730	Meiosis arrest female pro	yes	no	0.207	0.073	0.234	0.0001
Q8VIG2	1735	Meiosis arrest female pro	yes	no	0.207	0.073	0.234	0.0001
E1BZ85	1741	Meiosis arrest female pro	yes	no	0.207	0.073	0.234	0.0002
Q9Y4F3	1742	Meiosis arrest female pro	yes	no	0.207	0.073	0.234	0.0002
B2GUN4	1681	Meiosis arrest female pro	yes	no	0.235	0.086	0.234	0.0002
E1BP74	1742	Meiosis arrest female pro	yes	no	0.207	0.073	0.234	0.0003

>sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1 OS=Mus musculus GN=Marf1 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP      T+ Q I     + +           D ++    V   L++  +
Sbjct: 354 VFWDIENCSVPSGRSATTVVQRIREKFFRGH--REAEFICVCDISKENKEVIQELNNCQV 411

Query: 92  ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
            + H+ A                    + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 412 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 471

Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
              ++AS  L+  A  +  +   ++  PP
Sbjct: 472 VHKNQASEALLHHANQLIRFEEFISDLPP 500

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.
Mus musculus (taxid: 10090)

>sp|Q8VIG2|MARF1_RAT Meiosis arrest female protein 1 OS=Rattus norvegicus GN=Marf1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP      T+ Q I     + +           D ++    V   L++  +
Sbjct: 353 VFWDIENCSVPSGRSATTVVQRIREKFFRGHR--EAEFICVCDISKENKEVIQELNNCQV 410

Query: 92  ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
            + H+ A                    + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470

Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
              ++AS  L+  A  +  +   ++  PP
Sbjct: 471 VHKNQASEALLHHANQLIRFEEFISDLPP 499

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Rattus norvegicus (taxid: 10116)

>sp|E1BZ85|MARF1_CHICK Meiosis arrest female protein 1 homolog OS=Gallus gallus GN=MARF1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 21/149 (14%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 347 VFWDIENCSVPTGRSAVAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 404

Query: 92  ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
            + H+ A                    + AP+  +L+S D +F+  L  LR R  + I+L
Sbjct: 405 TVAHINATAKNAADDKLRQSLRRFADTHTAPATVVLVSTDVNFALELSDLRHRHGFRIIL 464

Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
              ++AS  L+  A  +  +   ++  PP
Sbjct: 465 VHKNQASEALLHHAHELVCFEEFISDLPP 493

Gallus gallus (taxid: 9031)

>sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1 SV=6

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 21/149 (14%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 355 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 412

Query: 92  ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
            + H+ A                    + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 413 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 472

Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
              ++AS  L+  A  +  +   ++  PP
Sbjct: 473 VHKNQASEALLHHANELIRFEEFISDLPP 501

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Homo sapiens (taxid: 9606)

>sp|B2GUN4|MARF1_XENTR Meiosis arrest female protein 1 homolog OS=Xenopus tropicalis GN=marf1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 21/166 (12%)

Query: 15  APMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGD 74
           +P  +T + Q       V+WDIENC VP      T+ + I   L K +           D
Sbjct: 325 SPDLATGQMQENLPPIGVFWDIENCSVPSGRSAVTVVKRIRERLFKGH--REAEFICVCD 382

Query: 75  TNRIPASVQHALSSTGIALNHVPAVDNPA------------------PSNYLLISGDRDF 116
            ++    V   L++  + + H+ A    A                  P+  +L+S D +F
Sbjct: 383 ISKENKEVIEELNNCQVTVAHINATAKNAADDKLRQSLRRFADTHTSPATVVLVSTDVNF 442

Query: 117 SNALHQLRMRR-YNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
           +  L  LR R  ++I+L   ++AS  L+  A  +  +   ++  PP
Sbjct: 443 ALELSDLRHRHSFHIILIHKNQASEALLHHAHELIHFEEFISDLPP 488

Xenopus tropicalis (taxid: 8364)

>sp|E1BP74|MARF1_BOVIN Meiosis arrest female protein 1 OS=Bos taurus GN=MARF1 PE=3 SV=2

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 21/149 (14%)

Query: 32  VWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGI 91
           V+WDIENC VP       + Q I     K +           D ++    V   L++  +
Sbjct: 353 VFWDIENCSVPSGRSATAVVQRIREKFFKGHR--EAEFICVCDISKENKEVIQELNNCQV 410

Query: 92  ALNHVPAV------------------DNPAPSNYLLISGDRDFSNALHQLRMRR-YNILL 132
            + H+ A                    + AP+  +L+S D +F+  L  LR R  ++I+L
Sbjct: 411 TVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIIL 470

Query: 133 AQPHKASAPLVAAAKSVWLWTSLVAGGPP 161
              ++AS  L+  A  +  +   ++  PP
Sbjct: 471 VHKNQASEALLHHANELIRFEEFISDLPP 499

Essential regulator of oogenesis required for female meiotic progression. Acts by down-regulating RNA transcripts, either at transcriptional of post-transcriptional level.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	617
359479976	640	PREDICTED: uncharacterized protein LOC10	0.965	0.931	0.602	0.0
255548285	627	hypothetical protein RCOM_1343910 [Ricin	0.952	0.937	0.570	0.0
359487696	638	PREDICTED: uncharacterized protein LOC10	0.917	0.887	0.566	1e-180
449463551	665	PREDICTED: uncharacterized protein LOC10	0.930	0.863	0.534	1e-177
255543024	703	nucleic acid binding protein, putative [	0.931	0.817	0.555	1e-174
356572894	632	PREDICTED: uncharacterized protein LOC10	0.933	0.911	0.518	1e-160
297821118	674	hypothetical protein ARALYDRAFT_486728 [	0.920	0.842	0.508	1e-158
357511719	638	Limkain-b1 [Medicago truncatula] gi|3555	0.927	0.896	0.499	1e-157
356503990	631	PREDICTED: uncharacterized protein LOC10	0.933	0.912	0.515	1e-157
356533521	617	PREDICTED: uncharacterized protein LOC10	0.902	0.902	0.507	1e-152

>gi|359479976|ref|XP_002273252.2| PREDICTED: uncharacterized protein LOC100253767 [Vitis vinifera]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/652 (60%), Positives = 462/652 (70%), Gaps = 56/652 (8%)

Query: 1   MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVK 60
           MGGD  G   A  + P    AE QYV+ KTSVWWDIENCQVPK CDPH IAQNISSAL K
Sbjct: 1   MGGDGNGGTAARATLP----AEPQYVSVKTSVWWDIENCQVPKGCDPHAIAQNISSALAK 56

Query: 61  MNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPA------------------VDNP 102
           + Y GPVSISAYGDTNRIPASVQ ALSSTGIALNHVPA                  VDNP
Sbjct: 57  LYYSGPVSISAYGDTNRIPASVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 116

Query: 103 APSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL 162
           AP+NYLLISGDRDFSNALHQLRMRRYNILLAQP KASAPL+AAAKSVWLWTSLVAGG PL
Sbjct: 117 APANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLVAGGFPL 176

Query: 163 ASGESLLHTNDFGTFNPE------DEPVQVSQPMGNSN------------TGRVSDTKLK 204
            SGES    +    FNPE       E +Q SQP+ +++             GRV DTK K
Sbjct: 177 TSGESSQLADCNNVFNPEMSQYPVPETMQTSQPVDSNSDGLSAGTQKFFSAGRVGDTKSK 236

Query: 205 GKYTKKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHE-FFGGTGEPRS 263
           GK+ +K  NQP+I+R +S  V +QES  N +S+Q E++Q K      HE      G   S
Sbjct: 237 GKFIRKIANQPNITRASSVLVGIQES--NSFSHQPEYTQGK------HESVVSANG---S 285

Query: 264 NPNFFPCHTDLSGGNGNNFSGNFRNQ--HLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPI 321
            PN+F  + D SG NGNNF GN ++   H LRPNN P Q +F  +N  P NS +HGFRP+
Sbjct: 286 TPNYFQGNPDSSGINGNNFIGNPQDHYPHPLRPNNIPTQASFASNNLYPPNSYSHGFRPM 345

Query: 322 PPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLN 381
           PP S GPRFP APPAN+PDI +L+MSEYPNYAQN PNFH + G E K    ESP+P  LN
Sbjct: 346 PPRSEGPRFPSAPPANVPDISRLSMSEYPNYAQNPPNFHQRIGGEYKPYSSESPHPPGLN 405

Query: 382 VPQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST-TFPASSNGGWGTQGRLTPSEYV 440
           VPQKG+     Q   +D+ ++R+  GP+ P  SSS       SSNG WG+QG   PSEYV
Sbjct: 406 VPQKGYLPHTSQLLYQDTSSNRYPGGPDLPAHSSSPVGANSVSSNGVWGSQGCPQPSEYV 465

Query: 441 QGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSL 500
           QGLIGVILL LNTLK E+++P+E NI+DCIR+G+PKH+NTDVRKAL  A+EQ MV+K++L
Sbjct: 466 QGLIGVILLTLNTLKTEKIMPTEVNISDCIRHGDPKHQNTDVRKALESAVEQQMVVKQNL 525

Query: 501 GALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALI 559
           GA+ LYV K E+LW C N + GNPNQYPK  WDRIQ FL +S GRSAIMASQC+YEAALI
Sbjct: 526 GAVQLYVGKKERLWKCVNPIGGNPNQYPKATWDRIQMFLATSIGRSAIMASQCKYEAALI 585

Query: 560 LKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSE 611
           L+N CL E ALG++L+ILNM+ T KKWI++HQSGWQP+ ITLAE  +D  +E
Sbjct: 586 LRNKCLEEFALGDVLQILNMLSTMKKWIVNHQSGWQPIKITLAETNTDINTE 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548285|ref|XP_002515199.1| hypothetical protein RCOM_1343910 [Ricinus communis] gi|223545679|gb|EEF47183.1| hypothetical protein RCOM_1343910 [Ricinus communis]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/642 (57%), Positives = 437/642 (68%), Gaps = 54/642 (8%)

Query: 1   MGGDVTGTVTASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVK 60
           M GDVTG + ++     A+ AE QYV+AKTSVWWDIENCQVPK CDPH IAQNISSALVK
Sbjct: 1   MVGDVTGGIAST--GTAAAAAEAQYVSAKTSVWWDIENCQVPKGCDPHAIAQNISSALVK 58

Query: 61  MNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVP------------------AVDNP 102
           +NYCG VSISAYGDTNRIP SVQHALSSTGIALNHVP                  AVDNP
Sbjct: 59  LNYCGAVSISAYGDTNRIPQSVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP 118

Query: 103 APSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPL 162
           AP+NYLLISGDRDFSN LHQLRMRRYNILLAQP KASAPL+AAAK+VWLWTSL AGG PL
Sbjct: 119 APANYLLISGDRDFSNCLHQLRMRRYNILLAQPQKASAPLIAAAKTVWLWTSLSAGGAPL 178

Query: 163 ASGESLLHTNDFGTFNP------EDEPVQVSQPMGNSNTG--------RVSDTKLKGKYT 208
           ++GES    N   TFN         E +Q S+   N++ G         V +T+ KGKY 
Sbjct: 179 SNGESTQLANVSSTFNAVTSQSRYTETIQFSKATENASLGYSNPFTNVNVGETRFKGKYV 238

Query: 209 KKPTNQPSISRVASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGG----TGEPRSN 264
           +    QP ISR +SAPV +QE+ +N+Y YQ + +Q KQFKKAPHEFFGG         S 
Sbjct: 239 QNTAKQPGISRASSAPVAVQETSSNEYPYQLDRAQAKQFKKAPHEFFGGNRPVVSASIST 298

Query: 265 PNFFPCHTDLSGGNGNNFSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIP 322
           PNFFP ++D +G NG+N  G+ + Q+   +RPN F MQ     D FL  +S+        
Sbjct: 299 PNFFPGNSDPAGSNGSNLIGSAQYQYAQPVRPNKFSMQQPVSPDGFLSMHSR-------- 350

Query: 323 PSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNV 382
           P +   +F      N+PDIGKL MSE   Y ++ PN H Q+ E+LK    ES N A LN 
Sbjct: 351 PEAFATKFSSTSFKNVPDIGKLGMSESCTYIEDAPNLHQQTVEQLKMGSVESSNSAFLNP 410

Query: 383 PQKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQG 442
           P K   M   Q  NR          P  P  S+++     SSN  WGTQGR  PSE+VQG
Sbjct: 411 PHKSLMMYSSQEDNRYPCAPEFPPPPFSPEVSNTT-----SSNVIWGTQGRPPPSEHVQG 465

Query: 443 LIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGA 502
            IGVILLAL TLK E+++P+EANITDCIR+G+ KHR+ DVRKAL+ AIE +MV+K+SLG 
Sbjct: 466 HIGVILLALYTLKAEKIMPTEANITDCIRFGDKKHRSIDVRKALDSAIEHNMVMKQSLGE 525

Query: 503 LPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILK 561
           +PLYV KNEKLW C N L GNPNQYPK +WD IQ+FLTSS+GRSAI+AS CRYEAALILK
Sbjct: 526 MPLYVGKNEKLWKCVNPLGGNPNQYPKAIWDGIQRFLTSSTGRSAILASHCRYEAALILK 585

Query: 562 NSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAE 603
             CL + ALG+++ ILN+ I  KKWI+HH+SGWQP+ I+L E
Sbjct: 586 QGCLEDHALGDVIHILNLTIYTKKWIVHHRSGWQPIAISLKE 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487696|ref|XP_002276596.2| PREDICTED: uncharacterized protein LOC100242533 [Vitis vinifera]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 357/630 (56%), Positives = 419/630 (66%), Gaps = 64/630 (10%)

Query: 20  TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
            AE QY  AKTSVWWDIENCQVPK C+PH+IAQNISSAL  MNY GPVSISAYGDT+RIP
Sbjct: 30  VAEAQYSGAKTSVWWDIENCQVPKGCEPHSIAQNISSALFTMNYKGPVSISAYGDTHRIP 89

Query: 80  ASVQHALSSTGIALNHVPA------------------VDNPAPSNYLLISGDRDFSNALH 121
             VQ ALSSTGIALNHVPA                  VDNPAP+NYLLISGDRDFSNALH
Sbjct: 90  PPVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALH 149

Query: 122 QLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESL-LHTNDFGTFN-- 178
           QLRMRRYNILLAQP KASAPL+AAAKSVWLWTSL+AGG PL +GES  L  N + + +  
Sbjct: 150 QLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLLAGGLPLTNGESQQLGNNSYSSSDTL 209

Query: 179 --PEDEPVQVSQP---------MGNS---NTGRVSDTKLKGKYTKKPTNQPSISRVASAP 224
             P  +P+Q +Q          +GN    N GR +D K KGK  ++  NQP+I R ASAP
Sbjct: 210 PIPVSDPIQTNQSVDSFSENSYLGNQKLPNMGRTADIKYKGKQNRRNLNQPNIPRTASAP 269

Query: 225 VPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSG 284
                             QQ      P+    G       PNFF    D S  NG+N   
Sbjct: 270 ------------------QQLSGAYNPNASLNGHA-----PNFFSGSPDPSRSNGHNLQS 306

Query: 285 NFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIG 342
           N++N +   LRPN FP QP F   N  P N        +PP  +GP F   PP N+PD+G
Sbjct: 307 NYQNHYSQPLRPN-FPSQPTFGPSNSFPPNPHTPASHIMPPRPDGPGFTNGPP-NVPDVG 364

Query: 343 KLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNS 402
            LN+SEYP+   N P+F  + GE  ++S  ESPNP SL+  QKGH +    +   D  N+
Sbjct: 365 VLNISEYPSNVHNPPSFQQRDGELKRNSNIESPNPGSLSGQQKGHILHDTPSFYHDPQNN 424

Query: 403 RHSRGPEGPPSSSSST-TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVP 461
           R+SRGPE PPSSSS+  T    SNG WG+ G   PSEYVQGLIGVILLALNTLK E+++P
Sbjct: 425 RYSRGPEFPPSSSSAMGTTNVPSNGIWGSHGCQKPSEYVQGLIGVILLALNTLKNEKILP 484

Query: 462 SEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENLY- 520
           +EANI DCIRYG+PKH+NTDV+KAL  AIEQ MVIK+ LG + LYV KN++LW C NL  
Sbjct: 485 TEANIADCIRYGDPKHQNTDVKKALESAIEQQMVIKQKLGTVQLYVGKNDRLWKCVNLMG 544

Query: 521 GNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMV 580
           GNP QY K  WD IQ FL S +GRSAIMASQC+YEAA+ILKN CL + ALG++L+ILNMV
Sbjct: 545 GNPKQYSKATWDGIQNFLISPAGRSAIMASQCKYEAAIILKNMCLKDRALGDVLQILNMV 604

Query: 581 ITPKKWIIHHQSGWQPVTITLAEYKSDSGS 610
           I+ KKWI H QSGWQPV I+L E  +DSG+
Sbjct: 605 ISAKKWITHLQSGWQPVNISLPESNTDSGA 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463551|ref|XP_004149497.1| PREDICTED: uncharacterized protein LOC101219837 [Cucumis sativus] gi|449522226|ref|XP_004168128.1| PREDICTED: uncharacterized protein LOC101228378 [Cucumis sativus]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 356/666 (53%), Positives = 425/666 (63%), Gaps = 92/666 (13%)

Query: 22  ERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPAS 81
           E QY+ AKTSVWWDIENCQVPK CDPH IAQNISSALVK+NYCGPVSISAYGDTNRIP S
Sbjct: 16  EPQYIRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNS 75

Query: 82  VQHALSSTGIALNHVP------------------AVDNPAPSNYLLISGDRDFSNALHQL 123
           +Q ALSSTGIALNHVP                  AVDNPAP+NYLLISGDRDFSNALHQL
Sbjct: 76  IQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQL 135

Query: 124 RMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPEDEP 183
           RMRRYNILLAQP KASAPLVAAAKSVWLW SLVAGG P++S ES    N      P  EP
Sbjct: 136 RMRRYNILLAQPQKASAPLVAAAKSVWLWMSLVAGGLPISSTESSQLVNGI----PTSEP 191

Query: 184 VQVSQPMG---NSNTG---------------------RVSDTKLKGKYTKKPTNQPSISR 219
            Q+SQ  G   N +TG                     R+ D K KGKY +K +NQP ISR
Sbjct: 192 -QISQTSGFDHNQHTGQAIVYKPENVNLGNQRSYSTERMGDNKHKGKYVQKNSNQPVISR 250

Query: 220 VASAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEP-----RSNPNFF---PCH 271
             S+P  MQE KN ++  Q  H Q KQFKKAPHEFF G G P     +S PN F     H
Sbjct: 251 ALSSPASMQE-KNPNFLNQPNHMQAKQFKKAPHEFF-GNGNPVGSSSQSIPNLFIENSSH 308

Query: 272 TDLSGGNGNNFSGNFRNQHL---------------------LRPNNFPMQPNFPQDNFLP 310
             + G      S  ++  HL                     +R NN  + P F  DN  P
Sbjct: 309 ARIDGNGSMGSSSCYQPSHLAHARSDGNISMSNSSSYQPPHMRQNNMQLHPPFRPDNVFP 368

Query: 311 HNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSS 370
            NS NH   P+      P  P       P+I +L++S+YPNY  N  NFH Q+GE    S
Sbjct: 369 PNSLNHNPFPV---LGQPDLPA------PNISQLHISDYPNYPINPQNFHQQTGEFRPHS 419

Query: 371 YFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRGP--EGPPSSSSSTTFPASSNGGW 428
             +S NPA+ N P K  +  GGQ+ + D+LN RH+R      P SS ++ T   S N GW
Sbjct: 420 --KSQNPANFNAPDKSRSHHGGQSFHHDALNKRHARDAVEYTPHSSFTTVTRSLSHNDGW 477

Query: 429 GTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNC 488
           G+QG+  PSEY+QGLIGVILLALNTLK+E+++P E NI +CIRYG+ ++ NTDV+ AL+ 
Sbjct: 478 GSQGQPPPSEYIQGLIGVILLALNTLKVEKIMPKEENIAECIRYGDLRNCNTDVKMALDS 537

Query: 489 AIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAI 547
           AIE +MV+K+ +G L LYV K EKLW C N L G PNQYPK +WD+I  FL S +GRSA+
Sbjct: 538 AIEHNMVVKQEIGELQLYVGKTEKLWKCVNPLGGYPNQYPKAIWDKIHYFLASPAGRSAM 597

Query: 548 MASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSD 607
           MAS+CRYEAALILK  CL + ALG++L+IL+M+ + KKWI HH SGWQP+ I LAE  +D
Sbjct: 598 MASRCRYEAALILKKECLTDFALGDVLQILHMITSMKKWITHHNSGWQPINIILAEGNTD 657

Query: 608 SGSEID 613
           + S  +
Sbjct: 658 ASSRTE 663

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543024|ref|XP_002512575.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548536|gb|EEF50027.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 348/627 (55%), Positives = 418/627 (66%), Gaps = 52/627 (8%)

Query: 21  AERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPA 80
           AE QYVTAK SVWWDIENCQVP++CDPH IAQNISSALVKMNYCGPVSISAYGDTNRI +
Sbjct: 88  AEPQYVTAKISVWWDIENCQVPRDCDPHAIAQNISSALVKMNYCGPVSISAYGDTNRINS 147

Query: 81  SVQHALSSTGIALNHVPA------------------VDNPAPSNYLLISGDRDFSNALHQ 122
           +VQ ALSSTGIALNHVPA                  VDNPAP+NYLLISGDRDFSNALHQ
Sbjct: 148 AVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQ 207

Query: 123 LRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESL-----LHTNDFGTF 177
           LRMRRYNILLAQP +ASAPL+AAA+SVWLWTSLVAGGPP+   ESL      +T+   T 
Sbjct: 208 LRMRRYNILLAQPQRASAPLLAAARSVWLWTSLVAGGPPVREVESLPLGNISYTSTSDTL 267

Query: 178 N-PEDEPVQVSQP---------MGNSNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPM 227
           + P  + V + QP         MGN  T  +  TK KGK  ++  NQ + S+ ++APV  
Sbjct: 268 HIPVTDTVHLKQPSDSYSENPHMGNQRTTYI--TKQKGKTNRRNLNQTNGSKTSNAPVWA 325

Query: 228 QESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNNFSGNFR 287
           QE + N  SYQ            P  +         +PNF P   + +  +  N   N +
Sbjct: 326 QEDQPNSNSYQ------------PGPYVPKVTVSGPSPNFNPGSPNFTWSDVTNVRDNHQ 373

Query: 288 NQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLN 345
           +     LRPN   MQP+F   N  P N Q H    +PP  NG  F   PP N+PDIG L+
Sbjct: 374 SHFTQPLRPNASAMQPDFAAGNMYPPNFQIHAPL-MPPRPNGTTFTSEPPTNVPDIGNLH 432

Query: 346 MSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHS 405
           +S YP    N PN   ++GE+   +  ++P   +LN  Q G+      +   +++N+R+ 
Sbjct: 433 ISGYPTSFHNPPNAQRRNGEQKHDAKRKAPKSVNLNNSQNGYTTQNNPSGYHETVNNRYP 492

Query: 406 RGPEGPPSSSSST-TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEA 464
            G E PPSSSS+T T  A  N  WG  G   PSEYVQGLIGVILLALNTLK E+++P+EA
Sbjct: 493 GGSEYPPSSSSATATEVAPVNVIWGMPGCPKPSEYVQGLIGVILLALNTLKSEKIMPTEA 552

Query: 465 NITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNP 523
           NI DCIRYG+PKHRNTD++KAL  AIEQ MV+K++LGA+ LYV KNEKLW C N + G+ 
Sbjct: 553 NIADCIRYGDPKHRNTDIKKALESAIEQQMVMKQNLGAVQLYVGKNEKLWRCVNPIGGSL 612

Query: 524 NQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITP 583
            +YPK  WD IQKFL SS+GRSAIM+SQCRYEAA I+K+ CL ELALG IL+ILNMVI  
Sbjct: 613 KEYPKATWDEIQKFLASSAGRSAIMSSQCRYEAATIIKSMCLKELALGNILQILNMVIAL 672

Query: 584 KKWIIHHQSGWQPVTITLAEYKSDSGS 610
           KKWIIHHQSGWQP+TITLAE   + GS
Sbjct: 673 KKWIIHHQSGWQPLTITLAEANCNLGS 699

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572894|ref|XP_003554600.1| PREDICTED: uncharacterized protein LOC100794608 [Glycine max]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 329/635 (51%), Positives = 404/635 (63%), Gaps = 59/635 (9%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAK SVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSISAYGDT RI
Sbjct: 8   ANAEAQYATAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPA------------------VDNPAPSNYLLISGDRDFSNAL 120
           PASVQHALSSTGI+LNHVPA                  VDNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNAL 127

Query: 121 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFN-- 178
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL++GES    N   +    
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSS 187

Query: 179 ------PEDEPVQVSQPM--------GNS---NTGRVSDTKLKGKYTKKPTNQPSISRVA 221
                 P     Q+ Q +        GNS   N GR  D++ +GK   +  +Q +  R  
Sbjct: 188 SDSLQIPVTSAAQIPQQVDSYSEVHVGNSKFPNGGRGFDSRYQGKTNWRNPSQSNGPRAM 247

Query: 222 SAP-VPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNP--NFFPCHTDLSGGN 278
           + P V +Q+++N + +              P  F      P S P  N+   +TD    N
Sbjct: 248 NPPPVGLQDNRNRNNTNSHR----------PGNF--NPNVPLSGPATNYVHGNTDQLWSN 295

Query: 279 GNNFSGNFR--NQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPA 336
            +N  GN +      LRPNNFP+QP F   N    NS       +PP + GP F   P  
Sbjct: 296 NSNLQGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPNSHTFPTSMVPPRTGGPNFTSGPHT 355

Query: 337 NLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASN 396
           N+PDIG LN+S YPN   N P    +SGE  ++S   +P+       + GH +     S 
Sbjct: 356 NVPDIGNLNISGYPNSVHNPPTVPQRSGELKQNSNNNAPHHLRSIDEKNGHMV---HNSG 412

Query: 397 RDSLNSRHSRGPE-GPPSSSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLK 455
               +  +  GPE  PP  ++      S NG WG+ G   PSEYVQGLIGV+LLALN+LK
Sbjct: 413 TKQSHQGYQHGPEYQPPPLAAMGNNNPSGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLK 472

Query: 456 IERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWN 515
             +++P+EANITDCIRYG+PKHRNTDV+KAL  AIEQ+MV+K++LGALPLYV KN+KLW 
Sbjct: 473 NAKMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWK 532

Query: 516 CEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEIL 574
           C N L G P Q+ KE WD I+KFLT+ +GRSA+M +QC+YEA +++K+ C  +LALG++L
Sbjct: 533 CVNPLGGTPKQHSKETWDEIEKFLTTPAGRSALMGTQCKYEAGIVIKSMCFKDLALGDVL 592

Query: 575 KILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSG 609
           +ILNM+IT KKW+ HH SGWQP+ ITL E    SG
Sbjct: 593 QILNMLITHKKWVTHHPSGWQPLNITLPETNPGSG 627

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821118|ref|XP_002878442.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata] gi|297324280|gb|EFH54701.1| hypothetical protein ARALYDRAFT_486728 [Arabidopsis lyrata subsp. lyrata]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 338/665 (50%), Positives = 408/665 (61%), Gaps = 97/665 (14%)

Query: 10  TASVSAPMASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSI 69
           TASV+A MA   E QYV AKTSVWWDIENCQVPK  D H IAQNI+SAL KMNYCGPVSI
Sbjct: 13  TASVAAEMA---EAQYVRAKTSVWWDIENCQVPKGLDAHGIAQNITSALQKMNYCGPVSI 69

Query: 70  SAYGDTNRIPASVQHALSSTGIALNHVP------------------AVDNPAPSNYLLIS 111
           SAYGDTNRIP S+QHAL+STGIALNHVP                  A+DNPAP+N++LIS
Sbjct: 70  SAYGDTNRIPLSIQHALNSTGIALNHVPAGVKDASDKKILVDMLFWALDNPAPANFMLIS 129

Query: 112 GDRDFSNALHQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHT 171
           GDRDFSNALH LRMRRYN+LLAQP KAS PLV AAK+VWLWTSL AGG PL   ESL   
Sbjct: 130 GDRDFSNALHGLRMRRYNVLLAQPLKASVPLVHAAKTVWLWTSLSAGGIPLTRAESLQLV 189

Query: 172 NDFGTFNPEDEPVQVSQPM-GNSNTGRVSDTKLKGKYTKKPTN-QPSISRVASAPVPMQE 229
            +  T     E +  SQP+  N ++ RV D K K KY  K +N QP              
Sbjct: 190 ANQTTPTSGSE-IPSSQPLDSNFDSRRVFDNKPKVKYLSKQSNHQP-------------- 234

Query: 230 SKNNDYSYQFEHSQQKQFKKAPHEFFGGT-----------GEPRSNPNFFPCHT------ 272
             NN+Y  Q +++Q KQFKKAPHEFFG +             P SN N FP +       
Sbjct: 235 --NNNYRQQ-QNTQGKQFKKAPHEFFGSSQPSVSTSRPPPNLPSSNVNTFPGNVMTNPQN 291

Query: 273 ----------------------DLSGGNGNNFSGNFRNQH--LLRPNNFPMQPNFPQDNF 308
                                 D S  NGN+   + +N +    RP    M+P +  + F
Sbjct: 292 QNQYNYPPRPGPFPPRQPYPNPDPSWNNGNSIPNHAQNYYPNAGRPGASNMRPPY-GNVF 350

Query: 309 LPHNSQN------HGFRPIP-PSSNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHP 361
            P+  +N      +GFRP+  P ++GPRFP  P    PDI  L++S+YP+  QN PNF+P
Sbjct: 351 RPYRPENLNPPIGNGFRPMQHPRNDGPRFPSPPLLTAPDISNLSVSQYPSQTQNRPNFNP 410

Query: 362 QSGEELKSSYFESPNPASLNVPQKGHAMPGGQA---SNRDSLNSRHSRGPEGPPSSSSST 418
           Q  +E +     S    S N P KG+      A    +  +    +S  P  PPS     
Sbjct: 411 QVRQEFRPKMESS---YSHNGPNKGYIPRTSSAPVTHSTTTTGYTNSSSPGVPPSQPPVV 467

Query: 419 TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHR 478
           T   SSNG WGTQ    PSEYVQGLIGVIL ALN LK E+V+P+E NI+DCI+YG+PKHR
Sbjct: 468 TGSGSSNGMWGTQECPPPSEYVQGLIGVILHALNILKTEKVMPTEPNISDCIQYGDPKHR 527

Query: 479 NTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKF 537
            TD++KAL  A+E HM++  ++G L LY+ KNE LWNC N L  N  QYPK  WDRIQ+F
Sbjct: 528 GTDIKKALESALEHHMIVVTNVGKLKLYIGKNEALWNCVNPLGANAKQYPKATWDRIQEF 587

Query: 538 LTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPV 597
           LTSSSGR A  A+QCRYEAA +LK  CL EL LG+IL+ILN+  T KKWI HHQ+GW+P+
Sbjct: 588 LTSSSGRVAFTATQCRYEAAQVLKKECLKELTLGDILQILNITATTKKWITHHQTGWKPI 647

Query: 598 TITLA 602
           TI+LA
Sbjct: 648 TISLA 652

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511719|ref|XP_003626148.1| Limkain-b1 [Medicago truncatula] gi|355501163|gb|AES82366.1| Limkain-b1 [Medicago truncatula]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 327/655 (49%), Positives = 402/655 (61%), Gaps = 83/655 (12%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAK SVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSISAYGDT RI
Sbjct: 8   TNAEAQYTTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVP------------------AVDNPAPSNYLLISGDRDFSNAL 120
           PASVQHALSSTGI+LNHVP                  AVDNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNAL 127

Query: 121 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFNPE 180
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWT+L+AGGPPL SG++   +N   +F P 
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGPPLTSGDTQQLSNS--SFLPS 185

Query: 181 DEPVQVSQP----------------MGNSNT---GRVSDTKLKGKYTKKPTNQPSISRVA 221
            E +QV                    GNSN    GR  D++ +G+ T +  +QP+  +  
Sbjct: 186 SETLQVPVSNAAQTQQQGGPYSEIHAGNSNVQNGGRGFDSRYQGRPTWRNPSQPNGPKAM 245

Query: 222 S-APVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTD------- 273
           +  PV +Q+++NN  +Y+            P  +     +  S  NF   ++D       
Sbjct: 246 NPPPVGLQDNRNNVNNYR------------PGNYNPNVSQSGSTANFERANSDPLWSNNG 293

Query: 274 ---------LSGGNGNNFSGNFRNQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPS 324
                             +        LRPN FP+QP F   N    NS      P+PP 
Sbjct: 294 NQQGNHQNQQGNHQNQQGNHQNPYSQPLRPNGFPLQPPFAPSNSYSPNSHTFATTPVPPR 353

Query: 325 SNGPRFPPAPPANLPDIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFES-PNPASLNVP 383
           + G  F    P  +PDIG LN+S YPN   N P   PQ   +LK +   S P P      
Sbjct: 354 TVGNNFSTGSPRTVPDIGNLNISGYPNNGHN-PRTVPQRSGDLKPNPKSSAPLPVRSTNE 412

Query: 384 QKGHAMPGGQASNRDSLNSRHSRGPEGPPSSSSST---TFPASSNGGWGTQGRLTPSEYV 440
           Q GH +         S    +  GPE  P+ S++      P  SNG WG+ G   PSEYV
Sbjct: 413 QNGHMV-------HSSTTQGYPHGPEYQPTHSTAMGNNKLP--SNGKWGSSGCPKPSEYV 463

Query: 441 QGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSL 500
           QGLIGV+LLALN+LK  +++P+E NITD IRYG+PKHRNTDV+KAL  A+EQ MV+K++L
Sbjct: 464 QGLIGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAMEQQMVVKQNL 523

Query: 501 GALPLYVPKNEKLWNCEN-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALI 559
           GAL LYV KN+KLW C N L GNP Q+ KE+WD IQ FLT+ +GRSAIM +QC+YEA ++
Sbjct: 524 GALTLYVGKNDKLWKCVNPLGGNPKQHSKEIWDEIQNFLTTPAGRSAIMDTQCKYEAGIV 583

Query: 560 LKNSCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSGSEIDS 614
           +K+ C  +LALG++L+ILNMVIT KKWI+H QSGWQP+ +TL E   DSG   D+
Sbjct: 584 IKSMCFKDLALGDVLQILNMVITHKKWIVHQQSGWQPLILTLPESNPDSGVTSDA 638

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503990|ref|XP_003520782.1| PREDICTED: uncharacterized protein LOC100808926 [Glycine max]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 326/633 (51%), Positives = 400/633 (63%), Gaps = 57/633 (9%)

Query: 19  STAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRI 78
           + AE QY TAKTSVWWDIENC VPK  DPH IAQNISSALV+MNYCGPVSIS+YGDT RI
Sbjct: 8   TIAEAQYATAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISSYGDTTRI 67

Query: 79  PASVQHALSSTGIALNHVPA------------------VDNPAPSNYLLISGDRDFSNAL 120
           PASVQHALSSTGI+LNHVPA                  +DNPAP+NYLLISGDRDFSNAL
Sbjct: 68  PASVQHALSSTGISLNHVPAGVKDARDEKILVDMLFWALDNPAPANYLLISGDRDFSNAL 127

Query: 121 HQLRMRRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGESLLHTNDFGTFN-- 178
           HQLRMRRYNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL++GES    N   +    
Sbjct: 128 HQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSS 187

Query: 179 ------PEDEPVQVSQPM--------GNS---NTGRVSDTKLKGKYTKKPTNQPSISRVA 221
                 P     Q+ Q +        GNS   N GR  D++ +GK   +  +Q +  R A
Sbjct: 188 SDSLQIPVTSATQIQQQVDSYSEVHVGNSKFTNGGRGFDSRYQGKTNWRNLSQSNGPR-A 246

Query: 222 SAPVPMQESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTDLSGGNGNN 281
             P+P+          Q   ++       P  F      P S  N    +TD    N +N
Sbjct: 247 MNPLPV--------VLQDNRNRNNANSSQPGNF--NLNVPSSATNHGHGNTDQLWSNNSN 296

Query: 282 FSGNFRNQHL--LRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLP 339
             GN +  +   LRPNNFP+QP F   N    NS       +PP + GP F   P  N+P
Sbjct: 297 LQGNHQIPYSQPLRPNNFPLQPPFAPSNSYTPNSHTFPTSVVPPRTGGPNFTSGPHTNVP 356

Query: 340 DIGKLNMSEYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDS 399
           DIG L++S YPN   N P    +SGE  ++    +P        + GH +   Q S    
Sbjct: 357 DIGSLSISGYPNSVHNPPIVPQRSGELKQNPNSNAPLLLRSIDDKNGHMV---QNSGTQQ 413

Query: 400 LNSRHSRGPEGPPS--SSSSTTFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIE 457
           L+  +  GPE  P   ++     P S NG WG+ G   PSEYVQGLIGV+LLALN+LK  
Sbjct: 414 LHQGYQHGPEYQPMPLAAMGNNNP-SGNGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNA 472

Query: 458 RVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCE 517
           +++P+EANITDCIRYG+PKHRNTDV+KAL  AIEQ+MV+K++LGALPLYV KN+KLW C 
Sbjct: 473 KMMPTEANITDCIRYGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCV 532

Query: 518 N-LYGNPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKI 576
           N L G P Q+ KE WD+I KFLT+ +GRSA+M +QC+YEA +++K+ C  +L LG++L+I
Sbjct: 533 NPLGGTPKQHSKETWDQIGKFLTTPAGRSALMGTQCKYEAGIVIKSMCFKDLVLGDVLQI 592

Query: 577 LNMVITPKKWIIHHQSGWQPVTITLAEYKSDSG 609
           LNM+IT KKW+ HH SGWQP+ ITL E    SG
Sbjct: 593 LNMLITHKKWVTHHPSGWQPLNITLPEINPTSG 625

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533521|ref|XP_003535312.1| PREDICTED: uncharacterized protein LOC100794384 [Glycine max]

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 317/625 (50%), Positives = 395/625 (63%), Gaps = 68/625 (10%)

Query: 24  QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQ 83
           QY TAKTSVWWDIENC VPK CDPH IAQNISSALV+ NYCGPVSISAYGDT RI A VQ
Sbjct: 15  QYSTAKTSVWWDIENCHVPKGCDPHAIAQNISSALVRTNYCGPVSISAYGDTTRITAVVQ 74

Query: 84  HALSSTGIALNHVP------------------AVDNPAPSNYLLISGDRDFSNALHQLRM 125
           HALSSTGI+LNHVP                  AVDNPAP+NYLLISGDRDFSNALHQLR+
Sbjct: 75  HALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRL 134

Query: 126 RRYNILLAQPHKASAPLVAAAKSVWLWTSLVAGGPPLASGES-LLHTNDFGTFN-----P 179
           R+YNILLAQP KASAPLVAAAKSVWLWTSL+AGGPPL +GES  L  N+  + +     P
Sbjct: 135 RKYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLMNGESQQLGNNNIQSSSDTLPIP 194

Query: 180 EDEPVQVSQPMGN-----------SNTGRVSDTKLKGKYTKKPTNQPSISRVASAPVPMQ 228
               VQ+ Q MG+            NTGR  D++  GK   +    PS +    A  P  
Sbjct: 195 VSNAVQIPQHMGSFSEVHAGNQKFPNTGRQLDSRHHGKTNGR---NPSKTNGPKALNPAP 251

Query: 229 ESKNNDYSYQFEHSQQKQFKKAPHEFFGGTGEPRSNPNFFPCHTD-LSGGNGNNFSGNFR 287
           E+ +N  S Q  +            +        S PNF   + D + G NGN  S    
Sbjct: 252 ENYSNINSSQTGN------------YTHNVPPSGSTPNFICGNPDQMRGKNGNLHS---- 295

Query: 288 NQHLLRPNNFPMQPNFPQDNFLPHNSQNHGFRPIPPSSNGPRFPPAPPANLPDIGKLNMS 347
               LR N+FP+QP F  +N    N Q      +PP + GP F  AP  N+P+I    +S
Sbjct: 296 --QPLRSNSFPLQPPFIPNNSFSPNPQTFATSVVPPRTGGPSFSAAPLLNVPNISNRKIS 353

Query: 348 EYPNYAQNCPNFHPQSGEELKSSYFESPNPASLNVPQKGHAMPGGQASNRDSLNSRHSRG 407
            YP+ A +       +G+  +SS   +P+P      Q GH +      N   L + H  G
Sbjct: 354 GYPSNAHDPRPVKQWNGDLKQSSNNNAPSPVKSIGEQTGHMV-----QNTQQLYNGHPHG 408

Query: 408 PEGPPSSSSST---TFPASSNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEA 464
           PE  P+S ++      P   NG WG+ G   PSEYVQGLIGV+LLALNTLKIE+++P+EA
Sbjct: 409 PEYQPTSLTTMGNNNLPG--NGIWGSPGCPKPSEYVQGLIGVVLLALNTLKIEKIMPTEA 466

Query: 465 NITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCEN-LYGNP 523
           NITDCIR G+PKHRNTDV+KAL  AIEQ MV+K+++GAL L++ KN+K+W C + + GNP
Sbjct: 467 NITDCIRCGDPKHRNTDVKKALENAIEQQMVVKQNVGALQLFIGKNDKVWKCVSPVGGNP 526

Query: 524 NQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILNMVITP 583
            ++ KE W+ I+KFL++ SGR  IM +QC+YEA ++++N CL   ALG++L+ILNM+IT 
Sbjct: 527 KKHSKETWNEIKKFLSTPSGRLVIMGTQCKYEAGIVIRNMCLKNHALGDVLQILNMLITI 586

Query: 584 KKWIIHHQSGWQPVTITLAEYKSDS 608
           KKWI+H QSGWQP+ ITL E  SDS
Sbjct: 587 KKWIVHQQSGWQPLNITLTEVNSDS 611

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	617
TAIR|locus:2098058	673	AT3G62200 "AT3G62200" [Arabido	0.434	0.398	0.489	1.7e-107
TAIR|locus:2098073	279	EDA32 "embryo sac development	0.150	0.333	0.709	8.1e-30
TAIR|locus:2159491	346	AT5G61180 "AT5G61180" [Arabido	0.152	0.271	0.627	4.9e-29
TAIR|locus:2176075	841	AT5G64710 "AT5G64710" [Arabido	0.142	0.104	0.391	1.2e-24
TAIR|locus:2178163	924	AT5G09840 [Arabidopsis thalian	0.115	0.076	0.422	1.8e-23
TAIR|locus:2100957	257	AT3G60940 "AT3G60940" [Arabido	0.124	0.299	0.534	6.3e-15
TAIR|locus:2081700	472	AT3G62850 [Arabidopsis thalian	0.123	0.161	0.407	3.7e-14
TAIR|locus:2053567	489	AT2G15560 [Arabidopsis thalian	0.152	0.192	0.343	3.9e-13
TAIR|locus:2165902	192	AT5G35640 "AT5G35640" [Arabido	0.116	0.375	0.375	7.2e-13
TAIR|locus:2097963	157	AT3G62050 "AT3G62050" [Arabido	0.165	0.649	0.325	5.8e-10

TAIR|locus:2098058 AT3G62200 "AT3G62200" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
 Identities = 136/278 (48%), Positives = 178/278 (64%)

Query:   344 LNMSEYPNYAQNCPNFHPQSGEE----LKSSYFESPNPASLNVPQKGHAMPGGQASNRDS 399
             L++S+YP+  QN PNF+PQ  +E    ++SSY  +  P    +P+   A P  Q++   +
Sbjct:   395 LSVSQYPSQTQNRPNFNPQVRQEFRPKMESSYTHN-GPNKSYIPRCSSA-PVTQSTTTTA 452

Query:   400 LNXXXXXXXXXXXXXXXXXXXXXXXNGGWGTQGRLTPSEYVQGLIGVILLALNTLKIERV 459
                                      N  WGTQ    PSEYVQGLIGVIL AL+ LK E+V
Sbjct:   453 --HTYPSSPGVPPSQPPMVTGSGSSNDRWGTQECPPPSEYVQGLIGVILHALHILKTEKV 510

Query:   460 VPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVPKNEKLWNCENL 519
             +P+E NI+DCI+YG+PKH  TDV+KAL  A+E HM++  ++G L LY+ KNE LWNC N 
Sbjct:   511 MPTEPNISDCIQYGDPKHHGTDVKKALESALEHHMIMMTNVGKLKLYIGKNEALWNCVNP 570

Query:   520 YG-NPNQYPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLPELALGEILKILN 578
              G N  QYPKE WDRIQ+FLTSSSGR    A+ CRYEAA +LK  CL E  LG+IL+ILN
Sbjct:   571 LGANAKQYPKETWDRIQQFLTSSSGRVEFTATTCRYEAAQVLKKECLKEFTLGDILQILN 630

Query:   579 MVITPKKWIIHHQSGWQPVTITLA-EYKSDSGSEIDSG 615
             +  T KKWI HHQ+GW+P+TI+LA E  +++ +E D G
Sbjct:   631 ITATTKKWITHHQTGWKPITISLAAETTNETATEADPG 668

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098073 EDA32 "embryo sac development arrest 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 8.1e-30, P = 8.1e-30
 Identities = 66/93 (70%), Positives = 72/93 (77%)

Query:    18 ASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNR 77
             A TAE QYV AKTSVWWDIENCQVPK  D H IAQNISSAL KMNYCG VSISAYGDT+ 
Sbjct:    12 ADTAEAQYVMAKTSVWWDIENCQVPKGLDAHGIAQNISSALKKMNYCGRVSISAYGDTSG 71

Query:    78 IPASVQHALSSTGIALNHVPAVDNPAPSNYLLI 110
             IP  +QHAL+STGI L+HVPA    A    +L+
Sbjct:    72 IPHVIQHALNSTGIELHHVPAGVKDASDKKILV 104

GO:0005634 "nucleus" evidence=ISM

GO:0010197 "polar nucleus fusion" evidence=IMP

TAIR|locus:2159491 AT5G61180 "AT5G61180" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 4.9e-29, P = 4.9e-29
 Identities = 59/94 (62%), Positives = 74/94 (78%)

Query:    20 TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
             +A+  +  AKTSVWWDIENC+VPK CDPH +AQ+I S L K N+CGP++I AYGDTN+IP
Sbjct:    72 SAKADFAGAKTSVWWDIENCEVPKGCDPHGVAQSIRSVLSKSNFCGPLTIYAYGDTNQIP 131

Query:    80 ASVQHALSSTGIALNHVPAVDNPAPSNYLLISGD 113
             +SVQ ALSSTG++LNHVPAV N     Y+L  G+
Sbjct:   132 SSVQQALSSTGVSLNHVPAVSNGLIILYVLDDGE 165

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176075 AT5G64710 "AT5G64710" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 36/92 (39%), Positives = 53/92 (57%)

Query:    10 TASVSAPMASTAERQYV----TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCG 65
             ++S+SA   S    QY     + +  VWWD ENC +P   +   +AQ I+SA+      G
Sbjct:    38 SSSISAHYTSLKRSQYEEDSRSVRVPVWWDFENCHLPSGANVFKLAQTITSAVRICGIKG 97

Query:    66 PVSISAYGDTNRIPASVQHALSSTGIALNHVP 97
             P++I+AYGD  ++  + Q AL +TGI L HVP
Sbjct:    98 PITITAYGDMIQLSRTNQEALFATGINLTHVP 129

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2178163 AT5G09840 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.8e-23, Sum P(4) = 1.8e-23
 Identities = 30/71 (42%), Positives = 50/71 (70%)

Query:    27 TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHAL 86
             + + SVWWD  +C +P + + + +AQ+I++A+      GP++I+A+GD  ++P S Q AL
Sbjct:    70 SVRVSVWWDFLSCNLPVDTNVYKVAQSITAAIRNSGIKGPITITAFGDVLQLPRSNQDAL 129

Query:    87 SSTGIALNHVP 97
             S+TGI+L HVP
Sbjct:   130 SATGISLTHVP 140

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2100957 AT3G60940 "AT3G60940" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 46/86 (53%), Positives = 55/86 (63%)

Query:    82 VQHALSSTGIALNHVPAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPHKA-SA 140
             + H L  T IALNH      P PSN ++I+GDRD+S ALHQLR R +NILLA P  + S 
Sbjct:   169 IGHVL--TWIALNH------PQPSNLMVITGDRDYSVALHQLRCRSFNILLACPESSTST 220

Query:   141 PLVAAAKSVWLWTSLVAGGPPLASGE 166
              L+ AA SVW W SL+ G  PLA  E
Sbjct:   221 ALLRAATSVWKWNSLILGQKPLAENE 246

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2081700 AT3G62850 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 31/76 (40%), Positives = 46/76 (60%)

Query:    20 TAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIP 79
             TA+ +Y TA   VWWD+++C +P+  D   +  ++  A  K+ Y GPVSI+  GD N+ P
Sbjct:   230 TAKPEYATAPIVVWWDMKDCPIPEGYDARQVRPSLEGAFKKLGYSGPVSITGCGDHNKTP 289

Query:    80 ASVQHALSSTGIALNH 95
               +   LSSTG+ L H
Sbjct:   290 DHILRELSSTGVDLAH 305

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2053567 AT2G15560 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 3.9e-13, Sum P(3) = 3.9e-13
 Identities = 33/96 (34%), Positives = 45/96 (46%)

Query:    17 MASTAERQYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSAL-VKMNYCGPV-SISAYGD 74
             M +T          ++ WD+ENC VP +  P  +A NI  A+ +     GPV + SAYGD
Sbjct:    37 MIATQRHSSTDGPMAILWDMENCPVPSDVRPEDVASNIRMAIQLHPVISGPVVNFSAYGD 96

Query:    75 TNRIPASVQHALSSTGIALNHVPAVDNPAPSNYLLI 110
              N  P  V+     TG+ L  VP     A    +LI
Sbjct:    97 FNGFPRRVREGCQRTGVKLIDVPNGRKDASDKAILI 132

GO:0005634 "nucleus" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2165902 AT5G35640 "AT5G35640" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query:    28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALS 87
             A TSVWWDI  C +P + D   ++  I  AL K+ Y G ++ +A G    +P      + 
Sbjct:    32 AATSVWWDINRCPLPNDVDVRRVSPFIKRALEKLGYTGALTTTAIGILTDVPHDFLTQVY 91

Query:    88 STGIALNHVPAV 99
             S+GIA++H+P V
Sbjct:    92 SSGIAIHHIPLV 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097963 AT3G62050 "AT3G62050" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 42/129 (32%), Positives = 64/129 (49%)

Query:    25 YVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQH 84
             +  A+T ++WDIE+C++P + +     +NI SAL    + G VS+ AYGDT  +      
Sbjct:     9 FAAAETGIFWDIEDCKIPDDLNAGDALKNIKSALSSDGHHGTVSVRAYGDTTGLD----- 63

Query:    85 ALSSTGIALNHVPA------------------VDNPAPSNYLLISGD--RDFSNALHQLR 124
                S GI LNH PA                   ++P PS   LI GD  RDF + +  L+
Sbjct:    64 -FPSEGIKLNHFPAGERYARQTKMLEDIVSWSAEHPEPSTLFLIVGDTSRDFLDVVQLLK 122

Query:   125 MRR-YNILL 132
              ++ YN ++
Sbjct:   123 SKKNYNFII 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022522001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (622 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	617
cd10910	145	cd10910, limkain_b1_N_like, N-terminal LabA-like d	2e-54
pfam01936	141	pfam01936, NYN, NYN domain	3e-24
pfam14418	69	pfam14418, OHA, OST-HTH Associated domain	5e-05
cd06167	151	cd06167, LabA_like, LabA_like proteins	0.002

>gnl|CDD|199896 cd10910, limkain_b1_N_like, N-terminal LabA-like domain of limkain b1 and similar proteins

 Score =  181 bits (462), Expect = 2e-54
 Identities = 71/145 (48%), Positives = 87/145 (60%), Gaps = 19/145 (13%)

Query: 29  KTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSS 88
            T V+WDIENC VP   D   +  NI  AL K+ Y GPV+I+AYGD   +P  V   LSS
Sbjct: 1   PTGVFWDIENCPVPDGVDARRVGPNIKRALRKLGYSGPVTITAYGDLTDVPKDVLEELSS 60

Query: 89  TGIALNHVP------------------AVDNPAPSNYLLISGDRDFSNALHQLRMRRYNI 130
           TGI+L HVP                  A+DNP P+N +LISGD+DF++ L  LR R YN+
Sbjct: 61  TGISLAHVPSGDKNAADKKILVDILLWALDNPPPANIMLISGDKDFADTLSDLRERGYNV 120

Query: 131 LLAQPH-KASAPLVAAAKSVWLWTS 154
           LLAQP  +AS+ L  AA  VWLW S
Sbjct: 121 LLAQPPDQASSALSEAASEVWLWES 145

This eukaryotic subfamily of LabA-like domains contains the N-terminal domain of human limkain b1, a human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif, its - and similar - domain architectures are shared by several members of this family, and a function of these architectures in RNA binding or RNA metabolism has been suggested. The function of the N-terminal domain is unknown. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 145

>gnl|CDD|216797 pfam01936, NYN, NYN domain

 Score = 98.1 bits (245), Expect = 3e-24
 Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 30/145 (20%)

Query: 29  KTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPAS-VQHALS 87
           + +V+ D ENC VP   D   + + I S          V   AYG+           ALS
Sbjct: 1   RVAVFIDGENCPVPAGIDYRKVLEEIKS------GGEVVRARAYGNWGDPKLRKFPDALS 54

Query: 88  STGIALNHVP--------------AVD------NPAPSNYLLISGDRDFSNALHQLRMRR 127
           STGI + H P              AVD      +  P  ++L+SGD DF+  L +LR R 
Sbjct: 55  STGIPVQHKPLTKGSGKNAVDVGLAVDALELAYDNNPDTFVLVSGDGDFAPLLERLRERG 114

Query: 128 Y--NILLAQPHKASAPLVAAAKSVW 150
              N+L A+P  + A L+ AA    
Sbjct: 115 KRVNVLGAEPSTSDA-LINAADRFI 138

These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs. Length = 141

>gnl|CDD|206585 pfam14418, OHA, OST-HTH Associated domain

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 552 CRYEAALILKN---SCLPELALGEILKILNMVITPKKWIIHHQSGWQPVTIT 600
            RY  A  LK      L  L+LG +  I+ + I+ KK  I+  +   PV  +
Sbjct: 6   GRYGFAETLKKEGPPFLRGLSLGSLCHIVQLAISKKKL-IYENNNLLPVEAS 56

OHA occurs with OST-HTH. Length = 69

>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 36/148 (24%), Positives = 49/148 (33%), Gaps = 37/148 (25%)

Query: 32  VWWDIEN-------CQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPA---- 80
           V+ D EN           K  D   + + + S          V   AY +T R       
Sbjct: 3   VFVDGENLYIGLKRLLGLKRLDLEALLERLLSYA----DGRLVLARAYYNTARPDPSSPD 58

Query: 81  SVQHALSSTGIALNHVP---------AVD------------NPAPSNYLLISGDRDFSNA 119
             Q AL   G  +  VP          VD                   +L+SGD DF   
Sbjct: 59  RFQEALRRLGFEVIRVPRLRGKGEEKGVDVALALDALELAYERRIDTIVLVSGDSDFVPL 118

Query: 120 LHQLRMR-RYNILLAQPHKASAPLVAAA 146
           L +LR R +  I++     AS+ L  AA
Sbjct: 119 LERLRERGKRVIVVGFRRSASSALKNAA 146

A well conserved group of domains found in all three kingdoms of life, with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression. Another member is the N-terminal domain of limkain b1, a human autoantigen associated with cytoplasmic vesicles. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls in the LabA_like family. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	617
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	99.56
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	99.15
PF14418	75	OHA: OST-HTH Associated domain	99.15
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	98.84
COG1432	181	Uncharacterized conserved protein [Function unknow	95.13
KOG0260	1605	consensus RNA polymerase II, large subunit [Transc	84.31

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=99.56  E-value=1.6e-15  Score=133.00  Aligned_cols=116  Identities=31%  Similarity=0.484  Sum_probs=80.6

Q ss_pred             ceEEEEeccCCCCCCC---CChhhHHHHHHHHHHhcCcccce-EEEEEecCCCC-chHHHHHhhhcCceeeeccC-----
Q 007121           29 KTSVWWDIENCQVPKN---CDPHTIAQNISSALVKMNYCGPV-SISAYGDTNRI-PASVQHALSSTGIALNHVPA-----   98 (617)
Q Consensus        29 kTsVFWDIENCPVP~G---~da~~Va~nIr~ALrklGY~GPV-SIrAYGDls~i-p~~Vl~aLsSSGIsLiHVPa-----   98 (617)
                      +|+||||+|||..+.+   +++..+...|++       .|++ .+++|++...- .....++|...||.+.+++.     
T Consensus         1 rvavfvD~eN~~~~~~~~~~~~~~l~~~i~~-------~~~~~~~~~y~~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~   73 (146)
T PF01936_consen    1 RVAVFVDGENLYIPLKRWDIDFERLLEEIRK-------YGPLVRIRAYGNWDDPNQKSFQEALQRAGIKVRHFPLRKRGG   73 (146)
T ss_dssp             EEEEEEEHHHHHHHHHSS-B-HHHHHHHHTT-------TEEEEEEEEEE----HHHHHHHHHHHHHT-EEEE------S-
T ss_pred             CEEEEEEhHhCchhhCCCCCCHHHHHHHHHh-------cCCeEEEEEEeeccccchhhHHHHHHhCeeeEEeeecccccc
Confidence            6899999999999765   666666655554       5667 79999994321 24677899999999988752     


Q ss_pred             -----------------CCCCCCceEEEEeCCcchHHHHHHHhcCCCeEEEec-cCCCChhHHhhccceEe
Q 007121           99 -----------------VDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVWL  151 (617)
Q Consensus        99 -----------------lDNPpPANIMLISGDrDFS~aLs~LR~RGYNILLAq-P~~aS~~L~aaA~~vWl  151 (617)
                                       ....+++++||||||.||.+++..|+.+|++|.++. +..++..|..+|+.++.
T Consensus        74 ~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~  144 (146)
T PF01936_consen   74 GGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFIS  144 (146)
T ss_dssp             --S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred             cccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence                             223445999999999999999999999999999998 56789999999997654

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>cd06167 LabA_like LabA_like proteins

Probab=99.15  E-value=1.3e-10  Score=104.06  Aligned_cols=118  Identities=22%  Similarity=0.209  Sum_probs=88.3

Q ss_pred             ceEEEEeccCCCCCCCCCh--hhHHHHHHHHHHhcCcccce-EEEEEecCCC--CchHHHHHhhhcCceeeecc-----C
Q 007121           29 KTSVWWDIENCQVPKNCDP--HTIAQNISSALVKMNYCGPV-SISAYGDTNR--IPASVQHALSSTGIALNHVP-----A   98 (617)
Q Consensus        29 kTsVFWDIENCPVP~G~da--~~Va~nIr~ALrklGY~GPV-SIrAYGDls~--ip~~Vl~aLsSSGIsLiHVP-----a   98 (617)
                      +++||||.||+..-.....  ..-...+...+.+.   +.+ ..++|++...  ......++|...|+.+++++     .
T Consensus         2 r~~ifiD~~Nl~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~   78 (149)
T cd06167           2 RVAVFIDGENLYYSLRDLGGKRFDYRKLLEFLRDG---GEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGS   78 (149)
T ss_pred             eEEEEEeHHHHHHHHHHhcCCCcCHHHHHHHHHhC---CeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCC
Confidence            6899999999975221110  11122233333321   444 6899999874  45678899999999999988     2


Q ss_pred             ----------------CCCCCCceEEEEeCCcchHHHHHHHhcCCCeEEEeccC-CCChhHHhhccce
Q 007121           99 ----------------VDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH-KASAPLVAAAKSV  149 (617)
Q Consensus        99 ----------------lDNPpPANIMLISGDrDFS~aLs~LR~RGYNILLAqP~-~aS~~L~aaA~~v  149 (617)
                                      .....++.|||+|||.||.+++..||++|.+|+++.+. ..|..|..+|+.+
T Consensus        79 ~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f  146 (149)
T cd06167          79 GKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAKTSRELRKAADRF  146 (149)
T ss_pred             cccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence                            11237899999999999999999999999999999987 7889999988844

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>PF14418 OHA: OST-HTH Associated domain

Probab=99.15  E-value=9.5e-12  Score=105.24  Aligned_cols=59  Identities=36%  Similarity=0.451  Sum_probs=53.9

Q ss_pred             hhhhHHHHHHHHhh---hhhhhhhhhHHHHHHHhhccceeeecCCCCceeeEEEEeeecCCCC
Q 007121          550 SQCRYEAALILKNS---CLPELALGEILKILNMVITPKKWIIHHQSGWQPVTITLAEYKSDSG  609 (617)
Q Consensus       550 s~~ry~aa~ilk~~---cl~~~algdvlqil~~~i~~kkw~~~h~sgwqp~~i~~~~~~~~~~  609 (617)
                      +.|||++|..||+.   ||+++.||+|++|++|.|..|||+ +|+++|+|+.++..++++..+
T Consensus         9 ~~gRY~~A~~Lk~~gp~~lr~l~Lg~i~~iVqlai~~k~l~-y~~~~l~P~~~~~~~a~s~~~   70 (75)
T PF14418_consen    9 SGGRYGMAQFLKKRGPPFLRSLSLGDICHIVQLAISKKKLI-YENSNLKPFCISQKVANSFLG   70 (75)
T ss_pred             CCcHHHHHHHHHhcCchhhcCCcHHHHHHHHHHHHhCCeee-eCCCccccHHHHHHHHHhhhc
Confidence            38999999999998   999999999999999999999999 999999999888877766543

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=98.84  E-value=2.8e-08  Score=94.99  Aligned_cols=121  Identities=16%  Similarity=0.144  Sum_probs=92.5

Q ss_pred             hhcCCceEEEEeccCCCCCCCCChhhHHHHHHHHHHhcCcccceE-EEEEecCCCCchHHHHHhhhcCceeeeccC----
Q 007121           24 QYVTAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVS-ISAYGDTNRIPASVQHALSSTGIALNHVPA----   98 (617)
Q Consensus        24 rya~AkTsVFWDIENCPVP~G~da~~Va~nIr~ALrklGY~GPVS-IrAYGDls~ip~~Vl~aLsSSGIsLiHVPa----   98 (617)
                      +--.-+++||-|.+|.. +..+. .+ ...|...|.+   .|.++ -++||++... ...++.|...|++.+....    
T Consensus        19 ~~~~~riAvfID~~Nv~-~~~~~-~d-~~~i~~~ls~---~G~i~~~R~Y~~a~a~-~~l~~~l~~~Gf~pv~~kG~~Dv   91 (160)
T TIGR00288        19 RKGEKKIGLLVDGPNML-RKEFN-ID-LDEIREILSE---YGDIKIGKVLLNQYAS-DKLIEAVVNQGFEPIIVAGDVDV   91 (160)
T ss_pred             cCCCCcEEEEEeCCccC-hhhhc-cC-HHHHHHHHHh---cCCeEEEEEEechhcc-HHHHHHHHHCCceEEEecCcccH
Confidence            33356799999999996 22221 11 3455666655   57676 5899996433 4678899999999765443    


Q ss_pred             ---------CCCCCCceEEEEeCCcchHHHHHHHhcCCCeEEEec-cCCCChhHHhhccceEe
Q 007121           99 ---------VDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ-PHKASAPLVAAAKSVWL  151 (617)
Q Consensus        99 ---------lDNPpPANIMLISGDrDFS~aLs~LR~RGYNILLAq-P~~aS~~L~aaA~~vWl  151 (617)
                               +-.+.-++|+|+|||.||.+++.+||++|..|+++. +..++..|..+|+.++.
T Consensus        92 ~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~  154 (160)
T TIGR00288        92 RMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAII  154 (160)
T ss_pred             HHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEe
Confidence                     225788999999999999999999999999999999 44688999999997765

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.043  Score=53.12  Aligned_cols=59  Identities=25%  Similarity=0.215  Sum_probs=51.0

Q ss_pred             CCCCCCceEEEEeCCcchHHHHHHHhcCCCeEEEeccC-CCChhHHhhccceEeehhhhc
Q 007121           99 VDNPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQPH-KASAPLVAAAKSVWLWTSLVA  157 (617)
Q Consensus        99 lDNPpPANIMLISGDrDFS~aLs~LR~RGYNILLAqP~-~aS~~L~aaA~~vWlWeSLLa  157 (617)
                      .+++.-.+++|+|||.||.+++..++.+|..|+++.-. ..|..|..+|+.+..-.++..
T Consensus       106 ~~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~L~~~~~  165 (181)
T COG1432         106 ADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYIDLKSLEE  165 (181)
T ss_pred             hcccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEEchhhhh
Confidence            46788999999999999999999999999999999854 578889999998777666544

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]

Probab=84.31  E-value=61  Score=40.86  Aligned_cols=15  Identities=27%  Similarity=0.184  Sum_probs=8.5

Q ss_pred             CceEEEEeCCcchHH
Q 007121          104 PSNYLLISGDRDFSN  118 (617)
Q Consensus       104 PANIMLISGDrDFS~  118 (617)
                      +--..+|+.|-.+.+
T Consensus      1323 ~e~~~vi~f~gsyVn 1337 (1605)
T KOG0260|consen 1323 RELLNVISFDGSYVN 1337 (1605)
T ss_pred             hhhhheEeecccchh
Confidence            344566777765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	617
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 25/212 (11%), Positives = 55/212 (25%), Gaps = 68/212 (32%)

Query: 433 RLTPSEYV--QGLIG-----VILLALNTLKIERVVPSEA---NITDCIRYGEPKHRNTDV 482
            L P++ V   G++G     V L    + K++  +  +    N+ +C       +    V
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC-------NSPETV 198

Query: 483 RKALN--CAIEQHMVIKRSLGALPLYVPKNEKLWNCENLYGNPNQYPK------EVWDR- 533
            + L             RS  +  + +  +        L  +   Y         V +  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAK 257

Query: 534 -IQKF--------LTSSSGRSAIMASQCRYEAALI--------------------LKNSC 564
               F         T     +  +++      +L                      +   
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 565 LPELA----------LGEILKILNMVITPKKW 586
           LP             + E ++  + + T   W
Sbjct: 318 LPREVLTTNPRRLSIIAESIR--DGLATWDNW 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	617
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	99.31

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=99.31  E-value=5.7e-13  Score=122.08  Aligned_cols=129  Identities=17%  Similarity=0.199  Sum_probs=95.3

Q ss_pred             CCceEEEEeccCCCCCCCCChhhHHHHHHHHHHhcCcccceE-EEEEecCCC--CchHHHHHhhhcCceeeeccC-----
Q 007121           27 TAKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVS-ISAYGDTNR--IPASVQHALSSTGIALNHVPA-----   98 (617)
Q Consensus        27 ~AkTsVFWDIENCPVP~G~da~~Va~nIr~ALrklGY~GPVS-IrAYGDls~--ip~~Vl~aLsSSGIsLiHVPa-----   98 (617)
                      ..+++||||.+||..... +......+++..++.+.-.|.+. .++||++..  .....+++|...|++++..|.     
T Consensus         9 ~~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~   87 (165)
T 2qip_A            9 KEKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRD   87 (165)
T ss_dssp             CEEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSS
T ss_pred             CCcEEEEEEHHHHHHHHH-HHcCCCCCHHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccC
Confidence            358999999999985321 00000011333344333457664 799998764  223567899999999987773     


Q ss_pred             ------------C----CCCCCceEEEEeCCcchHHHHHHHhcC-CCeEEEeccCC-CChhHHhhccceEeehhhh
Q 007121           99 ------------V----DNPAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPHK-ASAPLVAAAKSVWLWTSLV  156 (617)
Q Consensus        99 ------------l----DNPpPANIMLISGDrDFS~aLs~LR~R-GYNILLAqP~~-aS~~L~aaA~~vWlWeSLL  156 (617)
                                  +    ..+..++++|+|||.||.+++..||++ |..|+++.... ++..|..+|+.++.+++++
T Consensus        88 ~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~  163 (165)
T 2qip_A           88 GSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF  163 (165)
T ss_dssp             CCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred             CccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence                        1    136789999999999999999999997 99999998654 7889999999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00