Citrus Sinensis ID: 007123

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------
MDNKHQHPQPQPQLSLAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRLEYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFAQQDDSEDEMDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNALSCSYGDEEHKPVHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEKEHVCMKRDMVKSHSRKFMSSFSRKIGKLSFFGHSSSRGSSSPSKNSYRTDSKVIERTCASTD
ccccccccccccccHHHHHHHHHcccHHHccccEEEEEEEccEEEEEcccccccccHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHcccHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccHHHHHcHHHcccccEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccEccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccccccccccccccEEEEEcccc
mdnkhqhpqpqpqlslaKSSRQRCNEwifrdvpsditidvnggtfalhkfplvsrsgrIRKLVAEHRdsdisriellnlpggaetFELAAKFCYGINFEITSANVAQLCCVSDYLEmtedfskdnlgsrAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFsrleysssgrlhmnkhtkcegdwwiedLSVLRFDLYQRVMTAMkcrgvrpesigaSLMNYAQKELtkksslwnpttqakvdlvsvpsgherQVVETIIGLlpveklavpINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAAlddllipsfrhagdtlfdvDTVHRILVNfaqqddsedemddasvfesdsphspsqTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAEtlpshartvHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHaaqnerlplQSIVQVLYFEQLRLRNALscsygdeehkpvhqswrissgalsaamsprdnyASLRRENRELKLELARLRMRLNDLEKEHVCMKRDMVKSHSRKFMSSFSRkigklsffghsssrgssspsknsyrtdskVIERTCASTD
mdnkhqhpqpqpqlslakSSRQRCNEWIFRDVPSDITIDVNGGTFAlhkfplvsrsgrIRKLVaehrdsdisrielLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFsrleysssgrlhmNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTkksslwnpttqakvdlvsvpsghERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFaqqddsedEMDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNALSCsygdeehkpvhQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMrlndlekehvcmkrdmvkshsRKFMSSFSRKIGKLSffghsssrgssspsknsyrtdskviertcastd
MDNKhqhpqpqpqLSLAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRLEYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRiasqldiaalddlliPSFRHAGDTLFDVDTVHRILVNFAQQDDSEDEMDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNALSCSYGDEEHKPVHQSWRISSGALSAAMSPRDNYASlrrenrelklelarlrmrlNDLEKEHVCMKRDMVKSHSRKFMSSFSRKIGKLsffghsssrgssspsknsYRTDSKVIERTCASTD
***********************CNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRLEYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELT***SLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFA**************************ALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLS****KRLCKMIDFQKL***********ERLPLQSIVQVLYFEQLRLRNALSCSYGD*******************************************L***********************************************************************
**************************WIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRK****************NLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSF**********************WWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELT********************SGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILV*********************************VAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLR******************************************************************************************************************************
**********************RCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRLEYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFAQQ***********************TALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNALSCSY*********QSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEKEHVCMKRDMVKSHSRKFMSSFSRKIGKLSFFG******************SKVIERTCASTD
***********************CNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSF*****************KCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTKK******************SGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFAQQDD********************QTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNALSCS****************************NYASLRRENRELKLELARLRMRLNDLEKEHVCMKRDMVK***************************************************
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MDNKHQHPQPQPQLSLAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRLEYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFAQQDDSEDEMDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLRLRNALSCSYGDEEHKPVHQSWRISSGALSAAMSPRDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVKSHSRKFMSSFSRKIGKLSFFGHSSSRGSSSPSKNSYRTDSKVIERTCASTD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query617 2.2.26 [Sep-21-2011]
Q9FKB6614 BTB/POZ domain-containing yes no 0.946 0.951 0.788 0.0
Q9SA69634 BTB/POZ domain-containing no no 0.927 0.902 0.481 1e-148
Q9C9Z7617 BTB/POZ domain-containing no no 0.918 0.918 0.481 1e-146
O82253635 BTB/POZ domain-containing no no 0.923 0.897 0.440 1e-136
Q9C9Z0582 Putative BTB/POZ domain-c no no 0.863 0.915 0.458 1e-135
Q66GP0604 BTB/POZ domain-containing no no 0.918 0.938 0.426 1e-123
Q682S0593 Root phototropism protein no no 0.868 0.903 0.369 1e-108
Q9S9Q9665 BTB/POZ domain-containing no no 0.881 0.818 0.388 1e-106
Q9LYW0592 BTB/POZ domain-containing no no 0.833 0.868 0.388 1e-100
Q9FNB3591 Putative BTB/POZ domain-c no no 0.855 0.893 0.388 1e-95
>sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1 Back     alignment and function desciption
 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/614 (78%), Positives = 540/614 (87%), Gaps = 30/614 (4%)

Query: 13  QLSLAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDIS 72
           +LSLAKSSRQ C+EWIFRDVPSDITI+VNGG FALHKFPLVSRSGRIR++VAEHRDSDIS
Sbjct: 22  KLSLAKSSRQSCSEWIFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDIS 81

Query: 73  RIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEE 132
           ++ELLNLPGGAETFELAAKFCYGINFEITS+NVAQL CVSDYLEMTE++SKDNL SR EE
Sbjct: 82  KVELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEE 141

Query: 133 YIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRLEYSS 192
           Y++ IVCKNLEMCV+VL+Q E LLPLADEL I+ RCIDA+ASKACAEQIASSFSRLEYSS
Sbjct: 142 YLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSS 201

Query: 193 SGRLHMNKHTKCE---GDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKE 249
           SGRLHM++  K     GDWWIEDLSVLR DLYQRVM AMKCRGVRPESIGASL++YA++E
Sbjct: 202 SGRLHMSRQVKSSGDGGDWWIEDLSVLRIDLYQRVMNAMKCRGVRPESIGASLVSYAERE 261

Query: 250 LTKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLD 309
           LTK+S                   HE+ +VETI+ LLPVE L VPI+FLFGLLR AV+LD
Sbjct: 262 LTKRSE------------------HEQTIVETIVTLLPVENLVVPISFLFGLLRRAVILD 303

Query: 310 CTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFAQQ--DDSED 367
            +V+CRLDLERR+ SQLD+A LDDLLIPSFRHAGDTLFD+DTVHRILVNF+QQ  DDSED
Sbjct: 304 TSVSCRLDLERRLGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVNFSQQGGDDSED 363

Query: 368 EMDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTV 427
           E    SVFE DSPHSPSQTA+ KVAKLVD+YLAEIAPDANL L+KF++IAE LP HART+
Sbjct: 364 E---ESVFECDSPHSPSQTAMFKVAKLVDSYLAEIAPDANLDLSKFLLIAEALPPHARTL 420

Query: 428 HDGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYF 487
           HDGLYRAID+YLKAHQ LSDSDKK+L K+IDFQKLSQEAGAHAAQNERLPLQSIVQVLYF
Sbjct: 421 HDGLYRAIDLYLKAHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYF 480

Query: 488 EQLRLRNALSCSYGD---EEHKPVHQSWRISSGALSAAMSPRDNYASLRRENRELKLELA 544
           EQL+LR++L  SY D   +  +   QSWRI+SGALSA MSP+DNYASLRRENRELKLELA
Sbjct: 481 EQLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSATMSPKDNYASLRRENRELKLELA 540

Query: 545 RLRMRLNDLEKEHVCMKRDMVKSHSRKFMSSFSRKIGKLSFFGHSSSRGSSSPSKNSYRT 604
           RLRMRLNDLEKEH+CMKRDM +SHSRKFMSSFS+K+GKLSFFGHSSSRGSSSPSK S+RT
Sbjct: 541 RLRMRLNDLEKEHICMKRDMQRSHSRKFMSSFSKKMGKLSFFGHSSSRGSSSPSKQSFRT 600

Query: 605 DSKVI-ERTCASTD 617
           DSKV+ ERTCASTD
Sbjct: 601 DSKVLMERTCASTD 614
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SA69|Y1301_ARATH BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2 Back     alignment and function description
>sp|O82253|SETH6_ARATH BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9Z0|Y3866_ARATH Putative BTB/POZ domain-containing protein At3g08660 OS=Arabidopsis thaliana GN=At3g08660 PE=3 SV=1 Back     alignment and function description
>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2 Back     alignment and function description
>sp|Q682S0|RPT2_ARATH Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2 Back     alignment and function description
>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query617
255560161610 protein binding protein, putative [Ricin 0.983 0.995 0.909 0.0
356504266612 PREDICTED: BTB/POZ domain-containing pro 0.980 0.988 0.871 0.0
356566199666 PREDICTED: BTB/POZ domain-containing pro 0.975 0.903 0.869 0.0
225465443616 PREDICTED: BTB/POZ domain-containing pro 0.969 0.970 0.881 0.0
297744339605 unnamed protein product [Vitis vinifera] 0.951 0.970 0.871 0.0
357469365617 BTB/POZ domain-containing protein [Medic 0.974 0.974 0.833 0.0
147818081582 hypothetical protein VITISV_008137 [Viti 0.914 0.969 0.829 0.0
449453272570 PREDICTED: BTB/POZ domain-containing pro 0.922 0.998 0.845 0.0
307135872570 phototropic-responsive NPH3 family prote 0.922 0.998 0.841 0.0
312282125617 unnamed protein product [Thellungiella h 0.954 0.954 0.792 0.0
>gi|255560161|ref|XP_002521098.1| protein binding protein, putative [Ricinus communis] gi|223539667|gb|EEF41249.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/609 (90%), Positives = 586/609 (96%), Gaps = 2/609 (0%)

Query: 9   QPQPQLSLAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRD 68
           Q Q QLSLAK SRQRCNEWIFRDVPSDITI+V+GGTFALHKFPLVSRSGRIRKLVAEHRD
Sbjct: 4   QQQQQLSLAKCSRQRCNEWIFRDVPSDITIEVSGGTFALHKFPLVSRSGRIRKLVAEHRD 63

Query: 69  SDISRIELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGS 128
           +DISR+ELLNLPGG ETFELAAKFCYGINFEITS NVAQLCCVSDYLEMTE+FSKDNLGS
Sbjct: 64  ADISRVELLNLPGGPETFELAAKFCYGINFEITSTNVAQLCCVSDYLEMTEEFSKDNLGS 123

Query: 129 RAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRL 188
           RAEEY++ IVCKNLEMCVEVLQQCE+LLPLADELKIVSRCIDA+ASKACAEQIASSFSRL
Sbjct: 124 RAEEYVESIVCKNLEMCVEVLQQCENLLPLADELKIVSRCIDAIASKACAEQIASSFSRL 183

Query: 189 EYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQK 248
           EYSSSGRLHMNK  KCEGDWWIEDLS+LR DLYQRVMTAMKCRGVRPESIGASL+NYAQK
Sbjct: 184 EYSSSGRLHMNKQAKCEGDWWIEDLSILRIDLYQRVMTAMKCRGVRPESIGASLVNYAQK 243

Query: 249 ELTKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVML 308
           ELTKKSSLWNP++  KVDLVS  +GHER VVETI  LLPVEKLAVPI+FLFGLLRSAVML
Sbjct: 244 ELTKKSSLWNPSSGTKVDLVS--TGHERLVVETIANLLPVEKLAVPISFLFGLLRSAVML 301

Query: 309 DCTVACRLDLERRIASQLDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFAQQDDSEDE 368
           DCT+ACRLDLERRI SQLDIA LDDLLIPSFRHAGDTLFDVDTVHRILVNF+QQDDSED+
Sbjct: 302 DCTIACRLDLERRIGSQLDIATLDDLLIPSFRHAGDTLFDVDTVHRILVNFSQQDDSEDD 361

Query: 369 MDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVH 428
           M+DASVFESDSPHSPSQTAL KVAKLVDNYLAEIAPDANLKL+KFMVIAETLPSHART+H
Sbjct: 362 MEDASVFESDSPHSPSQTALFKVAKLVDNYLAEIAPDANLKLSKFMVIAETLPSHARTIH 421

Query: 429 DGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFE 488
           DGLYRAIDIYLKAHQ LSDSD+K+LCK+IDFQKLSQEAGAHAAQNERLPLQ+IVQVLYFE
Sbjct: 422 DGLYRAIDIYLKAHQGLSDSDRKKLCKLIDFQKLSQEAGAHAAQNERLPLQAIVQVLYFE 481

Query: 489 QLRLRNALSCSYGDEEHKPVHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRM 548
           Q+RLRNAL C YGDE+HKP+HQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRM
Sbjct: 482 QIRLRNALCCPYGDEDHKPMHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRM 541

Query: 549 RLNDLEKEHVCMKRDMVKSHSRKFMSSFSRKIGKLSFFGHSSSRGSSSPSKNSYRTDSKV 608
           RLNDLEKEHVCMKR+M KSHSRKFMSSFS+KIGKLSFFGHSSSRGSSSPSKNS+RTDS+V
Sbjct: 542 RLNDLEKEHVCMKREMQKSHSRKFMSSFSKKIGKLSFFGHSSSRGSSSPSKNSHRTDSRV 601

Query: 609 IERTCASTD 617
           IERTCASTD
Sbjct: 602 IERTCASTD 610

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356504266|ref|XP_003520918.1| PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Glycine max] Back     alignment and taxonomy information
>gi|356566199|ref|XP_003551322.1| PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Glycine max] Back     alignment and taxonomy information
>gi|225465443|ref|XP_002265786.1| PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744339|emb|CBI37309.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357469365|ref|XP_003604967.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355506022|gb|AES87164.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147818081|emb|CAN78287.1| hypothetical protein VITISV_008137 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453272|ref|XP_004144382.1| PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Cucumis sativus] gi|449516133|ref|XP_004165102.1| PREDICTED: BTB/POZ domain-containing protein At5g48800-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135872|gb|ADN33739.1| phototropic-responsive NPH3 family protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|312282125|dbj|BAJ33928.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query617
TAIR|locus:2156524614 AT5G48800 [Arabidopsis thalian 0.944 0.949 0.719 2.1e-226
TAIR|locus:2007564634 AT1G03010 [Arabidopsis thalian 0.904 0.880 0.449 5.8e-121
TAIR|locus:2077763617 AT3G08570 [Arabidopsis thalian 0.878 0.878 0.450 4.9e-117
TAIR|locus:504954965604 AT5G67385 [Arabidopsis thalian 0.755 0.771 0.453 5.1e-106
TAIR|locus:2064357593 RPT2 "ROOT PHOTOTROPISM 2" [Ar 0.461 0.480 0.369 7e-95
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.359 0.297 0.433 1.3e-90
TAIR|locus:2082132651 AT3G44820 [Arabidopsis thalian 0.607 0.576 0.341 3.9e-89
TAIR|locus:2083103526 AT3G49970 [Arabidopsis thalian 0.559 0.655 0.393 6.6e-85
TAIR|locus:2173204591 AT5G13600 [Arabidopsis thalian 0.763 0.796 0.386 2.2e-82
TAIR|locus:2154920668 AT5G66560 [Arabidopsis thalian 0.682 0.630 0.370 1.7e-80
TAIR|locus:2156524 AT5G48800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2185 (774.2 bits), Expect = 2.1e-226, P = 2.1e-226
 Identities = 441/613 (71%), Positives = 492/613 (80%)

Query:    14 LSLAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISR 73
             LSLAKSSRQ C+EWIFRDVPSDITI+VNGG FALHKFPLVSRSGRIR++VAEHRDSDIS+
Sbjct:    23 LSLAKSSRQSCSEWIFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISK 82

Query:    74 IELLNLPGGAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEY 133
             +ELLNLPGGAETFELAAKFCYGINFEITS+NVAQL CVSDYLEMTE++SKDNL SR EEY
Sbjct:    83 VELLNLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEY 142

Query:   134 IDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAVASKACAEQIASSFSRLEYSSS 193
             ++ IVCKNLEMCV+VL+Q E LLPLADEL I+ RCIDA+ASKACAEQIASSFSRLEYSSS
Sbjct:   143 LESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFSRLEYSSS 202

Query:   194 GRLHMNKHTKCEGD---WWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKEL 250
             GRLHM++  K  GD   WWIEDLSVLR DLYQRVM AMKCRGVRPESIGASL++YA++EL
Sbjct:   203 GRLHMSRQVKSSGDGGDWWIEDLSVLRIDLYQRVMNAMKCRGVRPESIGASLVSYAEREL 262

Query:   251 TKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDC 310
             TK+S                   HE+ +VETI+ LLPVE L VPI+FLFGLLR AV+LD 
Sbjct:   263 TKRSE------------------HEQTIVETIVTLLPVENLVVPISFLFGLLRRAVILDT 304

Query:   311 TVACRLDLERRXXXXXXXXXXXXXXXPSFRHAGDTLFDVDTVHRILVNFAQQ--DDSEDE 368
             +V+CRLDLERR               PSFRHAGDTLFD+DTVHRILVNF+QQ  DDSEDE
Sbjct:   305 SVSCRLDLERRLGSQLDMATLDDLLIPSFRHAGDTLFDIDTVHRILVNFSQQGGDDSEDE 364

Query:   369 MDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVH 428
                 SVFE DSPHSPSQTA+ KVAKLVD+YLAEIAPDANL L+KF++IAE LP HART+H
Sbjct:   365 ---ESVFECDSPHSPSQTAMFKVAKLVDSYLAEIAPDANLDLSKFLLIAEALPPHARTLH 421

Query:   429 DGLYRAIDIYLKAHQNLSDSDKKRLCKMIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFE 488
             DGLYRAID+YLKAHQ LSDSDKK+L K+IDFQKLSQEAGAHAAQNERLPLQSIVQVLYFE
Sbjct:   422 DGLYRAIDLYLKAHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFE 481

Query:   489 QLRLRNALSCSYGDEEHKPVHQ---SWRISSGALSAAMSPRDNYASXXXXXXXXXXXXXX 545
             QL+LR++L  SY DEE KP  Q   SWRI+SGALSA MSP+DNYAS              
Sbjct:   482 QLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSATMSPKDNYASLRRENRELKLELAR 541

Query:   546 XXXXXNDLEKEHVCMKRDMVKSHSRKFMSSFSRKIGKLXXXXXXXXXXXXXXXXXXYRTD 605
                  NDLEKEH+CMKRDM +SHSRKFMSSFS+K+GKL                  +RTD
Sbjct:   542 LRMRLNDLEKEHICMKRDMQRSHSRKFMSSFSKKMGKLSFFGHSSSRGSSSPSKQSFRTD 601

Query:   606 SKVI-ERTCASTD 617
             SKV+ ERTCASTD
Sbjct:   602 SKVLMERTCASTD 614
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2007564 AT1G03010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077763 AT3G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083103 AT3G49970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154920 AT5G66560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKB6Y5880_ARATHNo assigned EC number0.78820.94650.9511yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_801211.1
annotation not avaliable (613 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query617
pfam03000249 pfam03000, NPH3, NPH3 family 1e-120
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-04
pfam00651101 pfam00651, BTB, BTB/POZ domain 4e-04
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  356 bits (916), Expect = e-120
 Identities = 147/261 (56%), Positives = 181/261 (69%), Gaps = 15/261 (5%)

Query: 207 DWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTKKSSLWNPTTQAKVD 266
           DWW EDLS L  DL++RV+TAMK RGV+PE IG +LM+YA+K L   S         +  
Sbjct: 2   DWWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPGLS---------RSG 52

Query: 267 LVSVPSGHE-RQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQ 325
                S  E R ++ETI+ LLP EK +V  +FLF LLR+A++L  + +CR +LERRI  Q
Sbjct: 53  SSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASESCREELERRIGLQ 112

Query: 326 LDIAALDDLLIPSFRHAGDTLFDVDTVHRILVNFAQQDDSEDEMDDASVFESDSPHSPSQ 385
           LD A LDDLLIPS     +TL+DVD V RIL  F  +D +    DD      DS  SPS 
Sbjct: 113 LDQATLDDLLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDD-----EDSEASPSS 167

Query: 386 TALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQNL 445
           ++LLKVAKLVD YLAEIAPD NLKL+KF+ +AE +P  AR  HDGLYRAIDIYLKAH NL
Sbjct: 168 SSLLKVAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNL 227

Query: 446 SDSDKKRLCKMIDFQKLSQEA 466
           S+S+KKRLC+++D QKLSQEA
Sbjct: 228 SESEKKRLCRLMDCQKLSQEA 248

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 617
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.96
PHA02713557 hypothetical protein; Provisional 99.95
PHA02790480 Kelch-like protein; Provisional 99.91
PHA03098534 kelch-like protein; Provisional 99.91
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.68
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.55
KOG4350620 consensus Uncharacterized conserved protein, conta 99.39
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.3
KOG4591280 consensus Uncharacterized conserved protein, conta 99.09
KOG4682488 consensus Uncharacterized conserved protein, conta 98.66
KOG07831267 consensus Uncharacterized conserved protein, conta 98.42
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.19
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.79
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.85
KOG2716230 consensus Polymerase delta-interacting protein PDI 96.31
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 96.31
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.04
KOG3473112 consensus RNA polymerase II transcription elongati 95.61
KOG2838401 consensus Uncharacterized conserved protein, conta 95.25
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 94.95
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 94.24
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 93.97
KOG0511516 consensus Ankyrin repeat protein [General function 85.66
KOG2838401 consensus Uncharacterized conserved protein, conta 82.25
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 80.37
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=1.2e-85  Score=669.59  Aligned_cols=256  Identities=56%  Similarity=0.869  Sum_probs=225.7

Q ss_pred             CcccccccccCChHHHHHHHHhHhhCCCChhhHHHHHHHHHHhhhcccccCCCCCC-cccccCCCCCcchhHHHHHHHHH
Q 007123          206 GDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQKELTKKSSLWNPTT-QAKVDLVSVPSGHERQVVETIIG  284 (617)
Q Consensus       206 ~dWW~EDl~~L~~d~f~rVI~am~~~g~~~e~I~~al~~Ya~k~l~~~~~~~~~~~-~~~~~~~~~~~~~~r~LLEtIv~  284 (617)
                      .||||||++.|++|+|+|||.+|+++|+++++|+++|++||++|+|+..+...+.. .....+...  .+||.+||+||+
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~--~~~r~llEtiV~   78 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSE--NEQRELLETIVS   78 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhH--HHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999843211111 111112222  799999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhhccCChHHHHHHHHHHHhhhccccccccccccCCCCC-CccccHHHHHHHHHHHHccC
Q 007123          285 LLPVEKLAVPINFLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFRHAG-DTLFDVDTVHRILVNFAQQD  363 (617)
Q Consensus       285 lLP~~k~~vs~~fL~~LLr~a~~L~as~~Cr~~LEkrIg~qLd~AtldDLLips~~~~~-~~~yDvd~V~ril~~Fl~~~  363 (617)
                      |||.+|+++||+|||+|||+|+++++|..||.+||+|||.|||||||||||||+ ++.+ +|+||||+|+|||++||.++
T Consensus        79 lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~~t~yDVd~V~riv~~Fl~~~  157 (258)
T PF03000_consen   79 LLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGEDTLYDVDLVQRIVEHFLSQE  157 (258)
T ss_pred             hCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcccchhhHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999 4444 49999999999999999986


Q ss_pred             CCccccCccccccCCCCCCCChHHHHHHHHhHhHHHhhhcCCCCCChhHHHHHHHhcCCcccccchhHHHHHHHHHHhCC
Q 007123          364 DSEDEMDDASVFESDSPHSPSQTALLKVAKLVDNYLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAIDIYLKAHQ  443 (617)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLk~Hp  443 (617)
                      +..+.   ...+......+++.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus       158 ~~~~~---~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  158 EEAGE---EEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             ccccc---ccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            54211   111222234467789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHhhhccccccccCCHHHh
Q 007123          444 NLSDSDKKRLCKMIDFQKLSQEAG  467 (617)
Q Consensus       444 ~lse~Er~~lC~~~dc~KLS~eAc  467 (617)
                      +||++||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query617
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 9e-06
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 2e-05
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-04
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 3e-04
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 4e-04
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-04
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 7e-04
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 68.3 bits (166), Expect = 5e-12
 Identities = 85/648 (13%), Positives = 176/648 (27%), Gaps = 197/648 (30%)

Query: 4   KHQHPQPQPQLSLAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLV 63
           K +  QP     +    R R    ++ D                 K+  VSR     KL 
Sbjct: 99  KTEQRQPSMMTRMYIEQRDR----LYNDNQV------------FAKYN-VSRLQPYLKL- 140

Query: 64  AEHRDSDISRIELLNL-P---------GGAETFELAAKFC--YGI----NFEITSANVAQ 107
                    R  LL L P          G+    +A   C  Y +    +F+I   N+  
Sbjct: 141 ---------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 108 LCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSR 167
                  LEM +      L  +    ID               + +    +   +     
Sbjct: 192 CNSPETVLEMLQ-----KLLYQ----IDPNWT----------SRSDHSSNIKLRI----- 227

Query: 168 CIDAVASKACAEQIASSFSRLEYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLY-QRVMT 226
                        I +   RL       L    +  C        L VL  ++   +   
Sbjct: 228 -----------HSIQAELRRL-------LKSKPYENC--------LLVLL-NVQNAKAWN 260

Query: 227 AM--KCRGV---RPESIGASLMNYAQKELTKKSSLWNPTTQAKVDLVSVPSGHERQVVET 281
           A    C+ +   R + +   L       ++        T      L+        + ++ 
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-------KYLDC 313

Query: 282 IIGLLPVEKLAVPIN-FLFGLLRSAVMLDCTVACRLDLERRIASQLDIAALDDLLIPSFR 340
               LP E   +  N     ++ +  + D       D                    +++
Sbjct: 314 RPQDLPRE--VLTTNPRRLSII-AESIRD--GLATWD--------------------NWK 348

Query: 341 HAGDTLFDVDTVHRIL---VNFAQQDDSEDEMDDASVFESDSPHSPSQTALLKVAKLVDN 397
           H      + D +  I+   +N  +  +     D  SVF   + H P+    L +  +  +
Sbjct: 349 H-----VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL--LSL--IWFD 398

Query: 398 YLAEIAPDANLKLAKFMVIAETLPSHARTVHDGLYRAI----DIYLKAHQNLSDSDKKRL 453
            +         KL K+ ++ +       ++   +Y  +    +     H+++ D      
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 454 CKMIDFQKLSQEA---------GAHAAQNERLPLQSIVQVLYFEQLR-LRNALSCSYGDE 503
               D   L             G H    E     ++ ++++ +  R L   +       
Sbjct: 458 TF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKI------- 507

Query: 504 EHKPVHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEKEHVCMKRD 563
                    R  S A +A+ S  +    L+     +     +    +N +         D
Sbjct: 508 ---------RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--------D 550

Query: 564 MVKSHSRKFMSSFSRKIGKLSFFGHSSSRGSSSPSKNSYRTDSKVIER 611
            +       + S    + +++           +  +  +    K ++R
Sbjct: 551 FLPKIEENLICSKYTDLLRIALM---------AEDEAIFEEAHKQVQR 589
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query617
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.96
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.86
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.85
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.85
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.85
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.85
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.85
2vpk_A116 Myoneurin; transcription regulation, transcription 99.85
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.84
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.84
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.84
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.84
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.83
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.83
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.83
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.81
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.81
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.78
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.77
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.39
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.15
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.09
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.87
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.33
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.33
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.29
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.7
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.42
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.08
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.83
3kvt_A115 Potassium channel protein SHAW; tetramerization do 92.6
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 91.82
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 88.97
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 87.54
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 86.28
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.96  E-value=4.1e-30  Score=259.35  Aligned_cols=235  Identities=12%  Similarity=0.131  Sum_probs=177.4

Q ss_pred             hhhHHHHHhHHHhhcCCCeeEEEEECCeEeeecccccccccHHHHHhhccC-C--CCCcccccccCCCCCHHHHHHHHHH
Q 007123           16 LAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEH-R--DSDISRIELLNLPGGAETFELAAKF   92 (617)
Q Consensus        16 ~~~~~~~~~~~w~~~~~~~DV~v~V~g~~F~lHK~vLas~S~yfr~lf~~~-~--e~~~~~v~L~~~pgGae~felv~~F   92 (617)
                      -.+..++.++.++.++.+|||+|.|||+.|++||.+|+++|+||++||+.. .  ++....|.|++++  +++|+.+++|
T Consensus        14 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~   91 (256)
T 3hve_A           14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDY   91 (256)
T ss_dssp             THHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhh
Confidence            345678889999999999999999999999999999999999999999874 3  5667789999987  6999999999


Q ss_pred             HhCCCccCChhhHhHHHhhhcccccccccccchHHHHHHHHHHHHhhhhhhhHHHHHhhhhhHHHHHHhhchhHHHHHHH
Q 007123           93 CYGINFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDCIVCKNLEMCVEVLQQCESLLPLADELKIVSRCIDAV  172 (617)
Q Consensus        93 cY~~~i~it~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~~v~~sw~~si~~L~sC~~L~~~Ae~~~Iv~RcidsL  172 (617)
                      +|||++.|+.+||..++.||++|||++      |.+.|+.||.+.+..         .||..++.+|+.+++     +.|
T Consensus        92 ~Yt~~~~i~~~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~~---------~n~~~i~~~A~~~~~-----~~L  151 (256)
T 3hve_A           92 IFSGQIRLNEDTIQDVVQAADLLLLTD------LKTLCCEFLEGCIAA---------ENCIGIRDFALHYCL-----HHV  151 (256)
T ss_dssp             HHHSCCCCC-CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCCS---------STTHHHHHHHHHTTC-----HHH
T ss_pred             ccCCCCcccHhHHHHHHHHHHHHChHH------HHHHHHHHHHhhCCH---------hhHHHHHHHHHHcCc-----HHH
Confidence            999999999999999999999999999      999999999998844         599999999999984     333


Q ss_pred             HHHH----hhhhccccccccccccccccccCCCCccCCcccccccccCChHHHHHHHHhHhhCCCChhhHHHHHHHHHHh
Q 007123          173 ASKA----CAEQIASSFSRLEYSSSGRLHMNKHTKCEGDWWIEDLSVLRFDLYQRVMTAMKCRGVRPESIGASLMNYAQK  248 (617)
Q Consensus       173 A~kA----c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~~d~f~rVI~am~~~g~~~e~I~~al~~Ya~k  248 (617)
                      ..++    +.+..                        ..+-.++|..|+.+.+..++........+|+.|+++++.|+++
T Consensus       152 ~~~~~~~i~~~f~------------------------~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~  207 (256)
T 3hve_A          152 HYLATEYLETHFR------------------------DVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAH  207 (256)
T ss_dssp             HHHHHHHHHHHHH------------------------HHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHH------------------------HHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHc
Confidence            3332    11111                        1123678999999999988888776666789999999999987


Q ss_pred             hhcccccCCCCCCcccccCCCCCcchhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhccCC-hHHHHHHHH
Q 007123          249 ELTKKSSLWNPTTQAKVDLVSVPSGHERQVVETIIGLLPVEKLAVPINFLFGLLRSAVMLDCT-VACRLDLER  320 (617)
Q Consensus       249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~r~LLEtIv~lLP~~k~~vs~~fL~~LLr~a~~L~as-~~Cr~~LEk  320 (617)
                      ..+.+.                  .....|++.|+  +    +.+|..||...++...++..+ +.|+..|++
T Consensus       208 ~~~~R~------------------~~~~~ll~~VR--f----~~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          208 DTEIRK------------------VHMKDVMSALW--V----SGLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             --CCST------------------TTHHHHHHHHH--H----HTTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             CHHHHH------------------HHHHHHHHhCC--C----CCCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence            755331                  45678999999  4    478999999999999999998 789998875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 617
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 2e-06
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 7e-06
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 22  QRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPG 81
              N    RD+ +D+ I V+   F  HK  L++ SG    +  +    ++S I L     
Sbjct: 14  LNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDP-EI 72

Query: 82  GAETFELAAKFCYGINFEITSANVAQLCCVSDYLEMTE 119
             E F +   F Y     +   N+  +   + YL+M  
Sbjct: 73  NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH 110
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query617
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.87
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.86
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.52
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.22
d3kvta_103 akv3.1 voltage-gated potassium channel {California 95.2
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 94.84
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.13
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 91.63
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 89.95
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-22  Score=181.72  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=101.7

Q ss_pred             hhhHHHHHhHHHhhcCCCeeEEEEECCeEeeecccccccccHHHHHhhccCCCCCcccccccCCCCCHHHHHHHHHHHhC
Q 007123           16 LAKSSRQRCNEWIFRDVPSDITIDVNGGTFALHKFPLVSRSGRIRKLVAEHRDSDISRIELLNLPGGAETFELAAKFCYG   95 (617)
Q Consensus        16 ~~~~~~~~~~~w~~~~~~~DV~v~V~g~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~v~L~~~pgGae~felv~~FcY~   95 (617)
                      -++..++++++++.+|.+|||+|.|+|.+|++||.+|+++|+||++||.+.    ..+|.+++++  +++|+.+++|+||
T Consensus        11 h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~----~~~i~~~~v~--~~~f~~ll~~~Yt   84 (121)
T d1buoa_          11 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYT   84 (121)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc----cceeecCCCC--HHHHHHHHHheEc
Confidence            457788999999999999999999999999999999999999999999753    3468889987  6999999999999


Q ss_pred             CCccCChhhHhHHHhhhcccccccccccchHHHHHHHHHHH
Q 007123           96 INFEITSANVAQLCCVSDYLEMTEDFSKDNLGSRAEEYIDC  136 (617)
Q Consensus        96 ~~i~it~~NV~~L~cAA~~LqM~e~~~~~NL~~~ce~FL~~  136 (617)
                      |++.++.+||..++.||++|+|++      |.+.|++||++
T Consensus        85 g~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~~L~~  119 (121)
T d1buoa_          85 ATLQAKAEDLDDLLYAAEILEIEY------LEEQCLKMLET  119 (121)
T ss_dssp             SCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHhCCHH------HHHHHHHHHHh
Confidence            999999999999999999999999      99999999976
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure