Citrus Sinensis ID: 007127

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------
MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLPSCCSSLPLSSAELRAALHLLHSPLPTTSLPPPPRLFGLLTNRDKLMSSSDSDVASKIREGAREMARARGNLSDDVAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVQNEEKSVHC
cccEEccccccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEcccccccHHHHHHccccHHHHcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEccccccccEEEEccccccccHHHHHHHHHHcccEEEEcccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHcccccccc
cccccccccccccccccccHHHHHHHHHHHHHHHcHHHccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccEEEEccccccEEEEEEEcccccEEEccccccEEEEEEEcccccccccccccccEccEEEcccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHcEEEEEccccccccccHHHHHHcccccccccHHHccccHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHcccccccHHcHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccHHccccccEEEccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccc
memraseeirqgeditpplfpltfafhdslldghcsscfsplpsccsslplsSAELRAALHLlhsplpttslpppprlfglltnrdklmsssdsDVASKIREGAREMARARGNLSDDVAWEEAALCLVMTNavevqddktgrilGIAVYdkdfswinhscspnacyrfslsepnapsfrnekkmriaphvvfdsteaetpgksdvciscelkegskrhgpriivrsikpinkgeeVTVAYTdllqpkgmrqselwskyqfvchcrrcsasppsyvDMALEetfssnpeflslssdynFLKDEANQKLTDWMdegtseyllvgdpescCQKLENILTQglqgellesEKVKIQlnlrlhplhhlslnAYTTLASAYKIRSIDllalnsdidgqqleafdMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLarspgwnlfvkpelpistsspeihecskcslvdrlqvnpflsqsrnaDFQIICNEFLACITNMTRKVWGFLthgcgylqmlkdpidfswlrqssnlchtpccsdeesnketgyqESICRRVMqrcdgeeriTIFQLGVHCIAYGGYLanicygpnshwpckiknvvqneeksvhc
memraseeirqgeditpPLFPLTFAFHDSLLDGHCSSCFSPLPSCCSSLPLSSAELRAALHLLHsplpttslpppPRLFGLLTNrdklmsssdsdvasKIREGAREMARARGNLSDDVAWEEAALCLVMTnavevqddktgRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVvfdsteaetpgksdvCISCElkegskrhgpriivrsikpinkgeevTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLChtpccsdeesnketgyqesICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVqneeksvhc
MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHcsscfsplpsccsslplssAElraalhllhsplpttslpppprlFGLLTNRDKLMSSSDSDVASKIregaremarargNLSDDVAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVQNEEKSVHC
***************TPPLFPLTFAFHDSLLDGHCSSCFSPLPSCCSSLPLSSAELRAALHLLH***************************************************DDVAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSL*******************VV*************VCISCELK*****HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEETF*****FLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLCHTPCCS********GYQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVV*********
*EMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLPSCCSSLPLSSAELRAALHLLHSPLPTTSLPPPPRLFGLLTN******************GAREMA*********VAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPS************************FLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDL**********QLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPI*T********************************IICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEES************RVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVQN****V**
**********QGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLPSCCSSLPLSSAELRAALHLLHSPLPTTSLPPPPRLFGLLTNRDKL**********KIREGAREMARARGNLSDDVAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLCHTPC***********YQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVV*********
************EDITPPLFPLTFAFHDSLLDGHCSSCFSPLPSCCSSLPLSSAELRAALHLLHSPLPTTSLPPPPRLFGLLTNRDKLMSSSDSDVASKIREGAREMARARGNLSDDVAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEA****KSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVQNE******
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MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLPSCCSSLPLSSAELRAALHLLHSPLPTTSLPPPPRLFGLLTNRDKLMSSSDSDVASKIREGAREMARARGNLSDDVAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKPELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLTHGCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVQNEEKSVHC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query617 2.2.26 [Sep-21-2011]
Q3ECY6558 Protein SET DOMAIN GROUP yes no 0.860 0.951 0.369 1e-98
Q5RGL7434 N-lysine methyltransferas yes no 0.166 0.237 0.246 7e-05
Q54R14393 SET domain-containing pro yes no 0.098 0.155 0.360 8e-05
Q557F7386 SET and MYND domain-conta no no 0.098 0.158 0.377 0.0001
Q9CWR2428 Histone-lysine N-methyltr yes no 0.081 0.116 0.38 0.0002
Q9H7B4428 Histone-lysine N-methyltr no no 0.085 0.123 0.358 0.0003
Q54D67343 SET and MYND domain-conta no no 0.066 0.119 0.439 0.0004
Q5BJI7435 N-lysine methyltransferas no no 0.226 0.321 0.238 0.0006
Q7ZXV5430 N-lysine methyltransferas N/A no 0.145 0.209 0.262 0.0008
Q6GN68430 N-lysine methyltransferas N/A no 0.163 0.234 0.269 0.0008
>sp|Q3ECY6|SDG41_ARATH Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana GN=SDG41 PE=2 SV=1 Back     alignment and function desciption
 Score =  360 bits (925), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 233/631 (36%), Positives = 334/631 (52%), Gaps = 100/631 (15%)

Query: 1   MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLPSC------CSS------ 48
           ME+RA+E+I    D+ PPL PL  + +DS L  HCSSCFS LP        CS+      
Sbjct: 1   MEIRAAEDIEIRTDLFPPLSPLASSLYDSFLSSHCSSCFSLLPPSPPQPLYCSAACSLTD 60

Query: 49  ------------LPLSSAELRAALHLLHSPLPTTSLPPPPRLFGLLTNRDKLMSSSDSDV 96
                        P+  +++R +LHLL+S    TS   P RL  LLTN   LM+  D  +
Sbjct: 61  SFTNSPQFPPEITPILPSDIRTSLHLLNSTAVDTS-SSPHRLNNLLTNHHLLMA--DPSI 117

Query: 97  ASKIREGAREMARARGNLSDDVAWEEAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWI 156
           +  I   A  +A    +   +   EEAA+C V+TNAVEV D   G  LGIA+Y+  FSWI
Sbjct: 118 SVAIHHAANFIATVIRSNRKNTELEEAAICAVLTNAVEVHDSN-GLALGIALYNSSFSWI 176

Query: 157 NHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKEGSK 216
           NHSCSPN+CYRF           N +      HV    T +    +  VC    L  G+ 
Sbjct: 177 NHSCSPNSCYRFV----------NNRTSYHDVHVTNTETSSNLELQEQVC-GTSLNSGNG 225

Query: 217 RHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVD 276
            +GP++IVRSIK I  GEE+TV+Y DLLQP G+RQS+LWSKY+F+C+C RC+ASPP+YVD
Sbjct: 226 -NGPKLIVRSIKRIKSGEEITVSYIDLLQPTGLRQSDLWSKYRFMCNCGRCAASPPAYVD 284

Query: 277 MALEETFSSNPEFLSLSS-DYNFLKDEANQKLTDWMDEGTSEYLLVG-DPESCCQKLENI 334
             LE   +   E  ++   D +  KDEA  K+ D++ E   ++L    DP++CC+ +E++
Sbjct: 285 SILEGVLTLESEKTTVGHFDGSTNKDEAVGKMNDYIQEAIDDFLSDNIDPKTCCEMIESV 344

Query: 335 LTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNSDIDGQQL 394
           L  G+Q +  E  +      LRLH  H+++LNAY TLA+AY+IRS         ID +  
Sbjct: 345 LHHGIQFK--EDSQPHC---LRLHACHYVALNAYITLATAYRIRS---------IDSETG 390

Query: 395 EAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPGWNLFVKP 454
              DMSR SAAYSL LA  + HLF +E S   ++A FW +AGE L  LA          P
Sbjct: 391 IVCDMSRISAAYSLFLAGVSHHLFCAERSFAISAAKFWKNAGELLFDLA----------P 440

Query: 455 ELPISTSSPEIHECSKCSLVDRLQVNPFLSQSRNADFQIICNEFLACITNMTRKVWGFLT 514
           +L +  S     +C+KC +++        + + + D +    + L+C+ ++++  W FLT
Sbjct: 441 KLLMELSVESDVKCTKCLMLE--------TSNSHRDIKEKSRQILSCVRDISQVTWSFLT 492

Query: 515 HGCGYLQMLKDPIDFSWLRQSSNLCHTPCCSDEESNKETGYQESICRRVMQRCDGEERIT 574
            GC YL+  + P+DFS  R +           EES+K                  ++ + 
Sbjct: 493 RGCPYLEKFRSPVDFSLTRTNGE--------REESSK------------------DQTVN 526

Query: 575 IFQLGVHCIAYGGYLANICYGPNSHWPCKIK 605
           +  L  HC+ Y   L ++CYG  SH   + +
Sbjct: 527 VLLLSSHCLLYADLLTDLCYGQKSHLVSRFR 557

Arabidopsis thaliana (taxid: 3702)
>sp|Q5RGL7|SMY2B_DANRE N-lysine methyltransferase SMYD2-B OS=Danio rerio GN=smyd2b PE=2 SV=2 Back     alignment and function description
>sp|Q54R14|Y3443_DICDI SET domain-containing protein DDB_G0283443 OS=Dictyostelium discoideum GN=DDB_G0283443 PE=3 SV=1 Back     alignment and function description
>sp|Q557F7|Y3589_DICDI SET and MYND domain-containing protein DDB_G0273589 OS=Dictyostelium discoideum GN=DDB_G0273589 PE=3 SV=1 Back     alignment and function description
>sp|Q9CWR2|SMYD3_MOUSE Histone-lysine N-methyltransferase SMYD3 OS=Mus musculus GN=Smyd3 PE=2 SV=1 Back     alignment and function description
>sp|Q9H7B4|SMYD3_HUMAN Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4 Back     alignment and function description
>sp|Q54D67|Y2454_DICDI SET and MYND domain-containing protein DDB_G0292454 OS=Dictyostelium discoideum GN=DDB_G0292454 PE=3 SV=1 Back     alignment and function description
>sp|Q5BJI7|SMY2A_DANRE N-lysine methyltransferase SMYD2-A OS=Danio rerio GN=smyd2a PE=2 SV=1 Back     alignment and function description
>sp|Q7ZXV5|SMY2A_XENLA N-lysine methyltransferase SMYD2-A OS=Xenopus laevis GN=smyd2-a PE=2 SV=1 Back     alignment and function description
>sp|Q6GN68|SMY2B_XENLA N-lysine methyltransferase SMYD2-B OS=Xenopus laevis GN=smyd2-b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query617
224082468626 SET domain protein [Populus trichocarpa] 0.944 0.931 0.501 1e-152
356561422629 PREDICTED: protein SET DOMAIN GROUP 41-l 0.946 0.928 0.501 1e-150
359493189660 PREDICTED: protein SET DOMAIN GROUP 41-l 0.956 0.893 0.464 1e-142
357450261683 Protein SET DOMAIN GROUP [Medicago trunc 0.956 0.863 0.444 1e-135
449441550659 PREDICTED: protein SET DOMAIN GROUP 41-l 0.931 0.872 0.437 1e-130
296081193533 unnamed protein product [Vitis vinifera] 0.803 0.930 0.497 1e-125
449519204596 PREDICTED: LOW QUALITY PROTEIN: protein 0.907 0.939 0.439 1e-123
297852126567 hypothetical protein ARALYDRAFT_314093 [ 0.847 0.922 0.387 1e-100
42570091558 SET domain-containing protein [Arabidops 0.860 0.951 0.369 1e-96
357163459640 PREDICTED: protein SET DOMAIN GROUP 41-l 0.901 0.868 0.327 2e-79
>gi|224082468|ref|XP_002306703.1| SET domain protein [Populus trichocarpa] gi|222856152|gb|EEE93699.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 329/656 (50%), Positives = 412/656 (62%), Gaps = 73/656 (11%)

Query: 1   MEMRASEE-IRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLPSC-------------C 46
           MEMRA EE I  GEDITP + PL++A HDS +  HCSSCFS LPS              C
Sbjct: 1   MEMRAGEEDIEIGEDITPSVIPLSYALHDSFIHSHCSSCFSRLPSANFTQHHHVPTLLYC 60

Query: 47  SSLPLSSAELRAALHLLHSPLPTTSLPPPP-------------RLFGLLTNRDKLMSSSD 93
           SS+  SS    A LHLLHSP P++ L                 R+ GLLTNR+KLM+  D
Sbjct: 61  SSICSSSHFSPAELHLLHSP-PSSDLRAALRLLPLSLPSSSTNRICGLLTNREKLMA--D 117

Query: 94  SDVASKIREGAREMARARG-----NLSDDVAWEEAALCLVMTNAVEVQDDKTGRILGIAV 148
            ++++ +R GA+ +A AR      N  +D    EAALCLV+TNAVEV D++ GR +GIAV
Sbjct: 118 EEISAHVRYGAKAIAAARRIEMVENEKNDAVLLEAALCLVLTNAVEVHDNE-GRSIGIAV 176

Query: 149 YDKDFSWINHSCSPNACYRFSLSEP-NAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCI 207
           Y  +FSWINHSCSPNACYR  +S P N   F +E ++RI P      TE +         
Sbjct: 177 YGPNFSWINHSCSPNACYRSIISPPDNVLPFSDESRLRILP----AGTEVK--------- 223

Query: 208 SCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
                  S   GPR+IVRSIK I +GEEVTVAYTDLLQPK +R+SELW+KY+F+C C RC
Sbjct: 224 -------SHESGPRVIVRSIKRIKRGEEVTVAYTDLLQPKEIRRSELWAKYRFICCCTRC 276

Query: 268 SASPPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLLVGDPESC 327
            ASPPSYVD  L+E  +SN    SLSS+ +F +DEA +KLTD++DE T+EYL VGDPESC
Sbjct: 277 IASPPSYVDHVLQEISASNLASSSLSSELSFYRDEATRKLTDYVDEVTAEYLAVGDPESC 336

Query: 328 CQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIRSIDLLALNS 387
           C+K EN+L  GL  E LE  + K QLN RLH LHHL+LN YT LASAYKIR+ DL +L+S
Sbjct: 337 CKKFENMLITGLLDEQLEVREGKSQLNFRLHALHHLALNTYTVLASAYKIRASDLFSLHS 396

Query: 388 DIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGESLLTLARSPG 447
           ++ G   EA  MSR SAAYSLLLA+ T HLF  ESSL+ + ANFW SAGESLL LA+S  
Sbjct: 397 EVGGLPWEALSMSRISAAYSLLLATATYHLFCFESSLLVSVANFWTSAGESLLALAKSSA 456

Query: 448 WNLFVKPELPISTSSP-EIHECSKCSLVDRLQVNPFLSQS--RNADFQIICNEFLACITN 504
           W+   K   P+   SP   H+CSKCSL++  +VN    Q   R A F  + + FL CI +
Sbjct: 457 WDSLGKCGFPVLNLSPLAKHKCSKCSLLESFEVNLSFGQDHIRKAGFDSVSSRFLDCIGS 516

Query: 505 MTRKVWGFLTHGCGYLQMLKDPIDFSWLRQS-------SNLCHTPCCSDEESNKETGYQE 557
           + ++VWGFL  G  YL+M KDP DFSWL +S       + L H     +  +NK     E
Sbjct: 517 LLQEVWGFLIQGDRYLKMFKDPTDFSWLGKSLDIWDFDAELTHNDVDFNCWTNKSVSGIE 576

Query: 558 SICRRVMQRCDGEERITIFQLGVHCIAYGGYLANICYGPNSHWPCKIKNVVQNEEK 613
           ++          + RI  FQLGVHC+ YGG+LA ICYGP+SHW   I++ +  E K
Sbjct: 577 ALGY------TDQWRINTFQLGVHCLLYGGFLAGICYGPHSHWSSHIRSALNYEGK 626

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356561422|ref|XP_003548980.1| PREDICTED: protein SET DOMAIN GROUP 41-like [Glycine max] Back     alignment and taxonomy information
>gi|359493189|ref|XP_002265243.2| PREDICTED: protein SET DOMAIN GROUP 41-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357450261|ref|XP_003595407.1| Protein SET DOMAIN GROUP [Medicago truncatula] gi|355484455|gb|AES65658.1| Protein SET DOMAIN GROUP [Medicago truncatula] Back     alignment and taxonomy information
>gi|449441550|ref|XP_004138545.1| PREDICTED: protein SET DOMAIN GROUP 41-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296081193|emb|CBI18219.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449519204|ref|XP_004166625.1| PREDICTED: LOW QUALITY PROTEIN: protein SET DOMAIN GROUP 41-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297852126|ref|XP_002893944.1| hypothetical protein ARALYDRAFT_314093 [Arabidopsis lyrata subsp. lyrata] gi|297339786|gb|EFH70203.1| hypothetical protein ARALYDRAFT_314093 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42570091|ref|NP_683372.2| SET domain-containing protein [Arabidopsis thaliana] gi|97190651|sp|Q3ECY6.1|SDG41_ARATH RecName: Full=Protein SET DOMAIN GROUP 41 gi|332193843|gb|AEE31964.1| SET domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357163459|ref|XP_003579738.1| PREDICTED: protein SET DOMAIN GROUP 41-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query617
TAIR|locus:504956288558 AT1G43245 "AT1G43245" [Arabido 0.541 0.598 0.435 2.4e-79
UNIPROTKB|A8MXR1148 SMYD3 "Histone-lysine N-methyl 0.097 0.405 0.35 4.6e-06
CGD|CAL0002121630 orf19.3863 [Candida albicans ( 0.068 0.066 0.5 5.8e-06
UNIPROTKB|Q59V89630 CaO19.11344 "Possible SET-like 0.068 0.066 0.5 5.8e-06
ZFIN|ZDB-GENE-041001-201434 smyd2b "SET and MYND domain co 0.094 0.133 0.344 1.1e-05
ZFIN|ZDB-GENE-051120-138429 smyd3 "SET and MYND domain con 0.081 0.116 0.44 1.7e-05
UNIPROTKB|E1C5V0436 SMYD2 "N-lysine methyltransfer 0.072 0.103 0.466 3.7e-05
UNIPROTKB|I6L9H7272 SMYD2 "SMYD2 protein" [Homo sa 0.072 0.165 0.422 4.7e-05
UNIPROTKB|F1NM95243 F1NM95 "Uncharacterized protei 0.079 0.201 0.408 5e-05
MGI|MGI:1915889433 Smyd2 "SET and MYND domain con 0.103 0.147 0.338 6.1e-05
TAIR|locus:504956288 AT1G43245 "AT1G43245" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 675 (242.7 bits), Expect = 2.4e-79, Sum P(3) = 2.4e-79
 Identities = 159/365 (43%), Positives = 215/365 (58%)

Query:    81 LLTNRDKLMSSSDSDVASKIXXXXXXXXXXXXNLSDDVAWEEAALCLVMTNAVEVQDDKT 140
             LLTN   LM+  D  ++  I            +   +   EEAA+C V+TNAVEV D   
Sbjct:   104 LLTNHHLLMA--DPSISVAIHHAANFIATVIRSNRKNTELEEAAICAVLTNAVEVHDSN- 160

Query:   141 GRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETP 200
             G  LGIA+Y+  FSWINHSCSPN+CYRF     N  S+ +        HV    T +   
Sbjct:   161 GLALGIALYNSSFSWINHSCSPNSCYRFV---NNRTSYHDV-------HVTNTETSSNLE 210

Query:   201 GKSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQF 260
              +  VC    L  G+  +GP++IVRSIK I  GEE+TV+Y DLLQP G+RQS+LWSKY+F
Sbjct:   211 LQEQVC-GTSLNSGNG-NGPKLIVRSIKRIKSGEEITVSYIDLLQPTGLRQSDLWSKYRF 268

Query:   261 VCHCRRCSASPPSYVDMALEETFSSNPEFLSLSS-DYNFLKDEANQKLTDWMDEGTSEYL 319
             +C+C RC+ASPP+YVD  LE   +   E  ++   D +  KDEA  K+ D++ E   ++L
Sbjct:   269 MCNCGRCAASPPAYVDSILEGVLTLESEKTTVGHFDGSTNKDEAVGKMNDYIQEAIDDFL 328

Query:   320 LVG-DPESCCQKLENILTQGLQGELLESEKVKIQLNLRLHPLHHLSLNAYTTLASAYKIR 378
                 DP++CC+ +E++L  G+Q +  E  +      LRLH  H+++LNAY TLA+AY+IR
Sbjct:   329 SDNIDPKTCCEMIESVLHHGIQFK--EDSQPHC---LRLHACHYVALNAYITLATAYRIR 383

Query:   379 SIDLLALNSDIDGQQLEAFDMSRTSAAYSLLLASTTDHLFRSESSLIAASANFWASAGES 438
             SID     + I        DMSR SAAYSL LA  + HLF +E S   ++A FW +AGE 
Sbjct:   384 SIDS---ETGI------VCDMSRISAAYSLFLAGVSHHLFCAERSFAISAAKFWKNAGEL 434

Query:   439 LLTLA 443
             L  LA
Sbjct:   435 LFDLA 439
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|A8MXR1 SMYD3 "Histone-lysine N-methyltransferase SMYD3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
CGD|CAL0002121 orf19.3863 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59V89 CaO19.11344 "Possible SET-like protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041001-201 smyd2b "SET and MYND domain containing 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-138 smyd3 "SET and MYND domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5V0 SMYD2 "N-lysine methyltransferase SMYD2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I6L9H7 SMYD2 "SMYD2 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NM95 F1NM95 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1915889 Smyd2 "SET and MYND domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3ECY6SDG41_ARATHNo assigned EC number0.36920.86060.9516yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query617
pfam00856113 pfam00856, SET, SET domain 2e-05
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information 
 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 45/87 (51%)

Query: 154 SWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCELKE 213
            +INHSC PN   RF                                             
Sbjct: 71  RFINHSCEPNCEVRFVFV------------------------------------------ 88

Query: 214 GSKRHGPRIIVRSIKPINKGEEVTVAY 240
                G RI+VR+++ I  GEE+T+ Y
Sbjct: 89  ---NGGDRIVVRALRDIKPGEELTIDY 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 617
KOG2084482 consensus Predicted histone tail methylase contain 99.61
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.49
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.81
KOG2589453 consensus Histone tail methylase [Chromatin struct 98.01
COG2940480 Proteins containing SET domain [General function p 97.54
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 97.09
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 96.72
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 96.02
KOG11411262 consensus Predicted histone methyl transferase [Ch 94.33
KOG1337472 consensus N-methyltransferase [General function pr 93.7
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 91.88
KOG1085392 consensus Predicted methyltransferase (contains a 89.07
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=99.61  E-value=5.7e-14  Score=150.13  Aligned_cols=98  Identities=30%  Similarity=0.504  Sum_probs=81.7

Q ss_pred             HHHhhhcceeeeecCCCCc----eeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCC
Q 007127          124 ALCLVMTNAVEVQDDKTGR----ILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAET  199 (617)
Q Consensus       124 ~l~~v~tNsf~v~~~~~g~----~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~  199 (617)
                      ++..+..|++.+.+. ...    .+|.|+| |..+++||||.||+...|.                              
T Consensus       175 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~~hsC~pn~~~~~~------------------------------  222 (482)
T KOG2084|consen  175 LFPSLLCNSITNASS-LRVPEPLFLGRGLF-PGSSLFNHSCFPNISVIFD------------------------------  222 (482)
T ss_pred             HHHHHHHhhhhhhhh-hhccccccceeeec-ccchhcccCCCCCeEEEEC------------------------------
Confidence            566666777777665 333    4889999 9999999999999997763                              


Q ss_pred             CCCCCccchhccccCcCCCCCEEEEEEecCCCCCC-eEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCCC
Q 007127          200 PGKSDVCISCELKEGSKRHGPRIIVRSIKPINKGE-EVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPP  272 (617)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GE-EItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~~  272 (617)
                                         |....+++...+.+++ |++++|++.++++..||..|+..|.|.|.|+||.++.+
T Consensus       223 -------------------~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~~  277 (482)
T KOG2084|consen  223 -------------------GRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPTE  277 (482)
T ss_pred             -------------------CceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCCc
Confidence                               4456677778887776 99999999999999999999999999999999997655

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query617
3ru0_A438 Cocrystal Structure Of Human Smyd3 With Inhibitor S 2e-05
3oxf_A436 Human Lysine Methyltransferase Smyd3 In Complex Wit 2e-05
3qwp_A429 Crystal Structure Of Set And Mynd Domain Containing 2e-05
3pdn_A428 Crystal Structure Of Smyd3 In Complex With Methyltr 2e-05
3oxg_A464 Human Lysine Methyltransferase Smyd3 In Complex Wit 2e-05
3mek_A429 Crystal Structure Of Human Histone-Lysine N- Methyl 6e-05
3qwv_A433 Crystal Structure Of Histone Lysine Methyltransfera 3e-04
3s7b_A433 Structural Basis Of Substrate Methylation And Inhib 4e-04
3rib_A441 Human Lysine Methyltransferase Smyd2 In Complex Wit 5e-04
3tg4_A433 Structure Of Smyd2 In Complex With Sam Length = 433 5e-04
3n71_A490 Crystal Structure Of Cardiac Specific Histone Methy 5e-04
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor Sinefungin Bound Length = 438 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 218 HGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRC 267
           +GP +++R+++ I  GEE+T+ Y D+L     R+ +L  +Y F C C RC
Sbjct: 219 NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC 268
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form I) Length = 436 Back     alignment and structure
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Finger Mynd Domain-Containing Protein 1 Length = 429 Back     alignment and structure
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With Methyltransferase Inhibitor Sinefungin Length = 428 Back     alignment and structure
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With Adohcy (Form Iii) Length = 464 Back     alignment and structure
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N- Methyltransferase Smyd3 In Complex With S-Adenosyl-L- Methionine Length = 429 Back     alignment and structure
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase Smyd2 In Complex With The Cofactor Product Adohcy Length = 433 Back     alignment and structure
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition Of Smyd2 Length = 433 Back     alignment and structure
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With Adohcy Length = 441 Back     alignment and structure
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam Length = 433 Back     alignment and structure
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone Methyltransferase Smyd1 Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query617
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 2e-21
3qww_A433 SET and MYND domain-containing protein 2; methyltr 8e-21
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 9e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 3e-04
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 5e-04
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
 Score = 96.6 bits (239), Expect = 2e-21
 Identities = 50/350 (14%), Positives = 109/350 (31%), Gaps = 73/350 (20%)

Query: 3   MRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLPS---------------CCS 47
           ++A++E    + I       +    DSL++  C +CF                     C 
Sbjct: 21  LKATKEFWAADVIFAER-AYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQ 79

Query: 48  SLPLSSAELRAALHLLHSPLPTTSLPPPPRLFGLLTNRDKLMSSS--------------- 92
                + +   A    +  +P  ++    R+   +      ++                 
Sbjct: 80  KDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHF 139

Query: 93  DSDVASKIREGAREMARARGNLSDDVAWEEAA--LCLVMTNAVEVQDDKTGRILGIAVYD 150
             +   ++R       +     S   + +  +    ++  N   + D +  + +G+ ++ 
Sbjct: 140 GEEEQKELRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIF- 198

Query: 151 KDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKSDVCISCE 210
            +   +NH C PN    F+     A                                   
Sbjct: 199 PNLGLVNHDCWPNCTVIFNNGNHEAVK--------------------------------- 225

Query: 211 LKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSAS 270
                     RI +R++  I++GEE+TV+Y D L     R+ +L  +Y F C C  C   
Sbjct: 226 ---SMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKG 282

Query: 271 PPSYVDMALEETFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLL 320
               + +A +E    + E   +  +      +  +K+     EG    ++
Sbjct: 283 LKDDLFLAAKEDPKPSQE---VVKEMIQFSKDTLEKIDKARSEGLYHEVV 329
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query617
3qww_A433 SET and MYND domain-containing protein 2; methyltr 100.0
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 100.0
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 100.0
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.36
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.17
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 98.89
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 98.8
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 98.74
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 98.73
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 98.66
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 98.61
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 98.6
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 98.49
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 98.47
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 98.39
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 98.38
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 98.36
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 98.32
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 98.31
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.26
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 97.82
3db5_A151 PR domain zinc finger protein 4; methyltransferase 96.16
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 95.7
3dal_A196 PR domain zinc finger protein 1; methyltransferase 94.79
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 93.79
3ray_A237 PR domain-containing protein 11; structural genomi 92.49
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 92.34
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
Probab=100.00  E-value=2.9e-39  Score=347.51  Aligned_cols=293  Identities=20%  Similarity=0.290  Sum_probs=220.5

Q ss_pred             CceEEecCCCCCCccccCCCceEEeeccCCccccCCCcCCCCC------------CcCCCCC------------------
Q 007127            1 MEMRASEEIRQGEDITPPLFPLTFAFHDSLLDGHCSSCFSPLP------------SCCSSLP------------------   50 (617)
Q Consensus         1 ~GL~AtrdI~~Ge~Il~~e~Pla~vL~d~~l~~~Cs~CF~~lp------------YCs~sC~------------------   50 (617)
                      .||+|+++|++||+|+. ++|+++++.+.....+|++|+++.+            |||..|+                  
T Consensus        19 Rgl~A~r~i~~Ge~Il~-e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~~   97 (433)
T 3qww_A           19 RGLRALRPFHVGDLLFS-CPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLG   97 (433)
T ss_dssp             EEEEESSCBCTTCEEEE-EECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHSS
T ss_pred             CeEEECCCCCCCCEEEe-cCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHhC
Confidence            38999999999999998 8999999998899999999998642            8998884                  


Q ss_pred             ---CCCHHHHHHHHHhcCCCCCCCCCCh---hhHhhhhhhHHHhccCCChhHHHHHHHHHHHHHHH-hCC--CCChhHHH
Q 007127           51 ---LSSAELRAALHLLHSPLPTTSLPPP---PRLFGLLTNRDKLMSSSDSDVASKIREGAREMARA-RGN--LSDDVAWE  121 (617)
Q Consensus        51 ---~s~~~~RlaLRlL~~~~~~~s~~s~---~rl~~Lls~~~~L~s~~~~e~~~~i~~~a~~ma~~-r~~--~~d~~~le  121 (617)
                         .++..+|+++|+|++....+...+.   ..+.+|.+|.+++..    +..+.+......+..+ .+.  .++...+.
T Consensus        98 ~~~~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~  173 (433)
T 3qww_A           98 ENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDN----EKKDLIQSDIAALHQFYSKYLEFPDHSSLV  173 (433)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCH----HHHHHHHHHHHHHHHHHTTTCCCCCHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccCh----HHHHHHHHHHHHHHHHHhcccCCCCHHHHH
Confidence               1346799999999875322211222   234556666665532    3233344444444444 332  22333332


Q ss_pred             HHHHHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCC
Q 007127          122 EAALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPG  201 (617)
Q Consensus       122 ~~~l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~  201 (617)
                      . +++++.+|+|+|.+. +...+|.||| |.+|+|||||.||+.+.|+                                
T Consensus       174 ~-~~~~~~~N~f~i~~~-~~~~~g~gl~-p~~s~~NHsC~PN~~~~~~--------------------------------  218 (433)
T 3qww_A          174 V-LFAQVNCNGFTIEDE-ELSHLGSAIF-PDVALMNHSCCPNVIVTYK--------------------------------  218 (433)
T ss_dssp             H-HHHHHHHHCEEEECT-TCCEEEEEEC-TTGGGSEECSSCSEEEEEE--------------------------------
T ss_pred             H-HHHHHcCCceecccC-CccceeEEec-ccccccCCCCCCCceEEEc--------------------------------
Confidence            2 689999999999998 7788999999 9999999999999999884                                


Q ss_pred             CCCccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEeCcCCCCCCCCchhhhhhh
Q 007127          202 KSDVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCSASPPSYVDMALEE  281 (617)
Q Consensus       202 ~~~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~C~rC~~~~~~~sD~~l~~  281 (617)
                                       |.+++|||+|+|++||||||+|+|.++|+.+||+.|++.|+|.|.|.||..+.+   |..+.+
T Consensus       219 -----------------~~~~~~~a~r~I~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~---d~~~~~  278 (433)
T 3qww_A          219 -----------------GTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDK---DKAKVE  278 (433)
T ss_dssp             -----------------TTEEEEEESSCBCTTCEEEECCSCTTSCHHHHHHHHHHHHSCCCCSHHHHHCTT---HHHHTC
T ss_pred             -----------------CCEEEEEeccCcCCCCEEEEeecCCcCCHHHHHHHHhCcCCEEeECCCCCCCCc---chhhhh
Confidence                             457899999999999999999999999999999999999999999999999887   666665


Q ss_pred             cccCCcccccCCCCcccccHHHHHHHHHHHHHHHHHHhh---cCChhHHHHHHHHHHHhhhhhcchhhhHHHHHHhhhcC
Q 007127          282 TFSSNPEFLSLSSDYNFLKDEANQKLTDWMDEGTSEYLL---VGDPESCCQKLENILTQGLQGELLESEKVKIQLNLRLH  358 (617)
Q Consensus       282 i~~l~~~~~~~~s~s~~~~~~avekL~~~l~eA~~ey~~---~Gdpk~a~~yaelave~gl~e~g~~~edv~~m~~l~lh  358 (617)
                      +.+..          ..+..+.++.+..+..+.++++..   .|++.+|.+..+.+++               .+.-+++
T Consensus       279 ~~~~~----------~~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~---------------i~~~~lg  333 (433)
T 3qww_A          279 VRKLS----------SPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQE---------------KMSSVFE  333 (433)
T ss_dssp             BCCCS----------SCCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH---------------HHTTTBC
T ss_pred             hhhcC----------CCccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHH---------------HhhCccC
Confidence            54321          123456667776666665555553   4566777766666544               3456789


Q ss_pred             cchhhHHHHHHHHHHHHhhh
Q 007127          359 PLHHLSLNAYTTLASAYKIR  378 (617)
Q Consensus       359 P~hH~S~~~~~tLa~aY~~~  378 (617)
                      |.|-....++..|+.+|.-.
T Consensus       334 ~~Hp~~a~~~~nLa~~y~~~  353 (433)
T 3qww_A          334 DSNVYMLHMMYQAMGVCLYM  353 (433)
T ss_dssp             TTSHHHHHHHHHHHHHHHHT
T ss_pred             hhchHHHHHHHHHHHHHHhh
Confidence            99999999999999999865
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 617
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 2e-05
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 217 RHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCHCRRCS 268
           R GP   +R+++ +   EE+TVAY     P G    E    YQ      + +
Sbjct: 119 RFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQAT 170

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query617
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.66
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 98.76
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 98.56
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.33
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 98.11
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.66  E-value=3.3e-17  Score=158.45  Aligned_cols=91  Identities=19%  Similarity=0.145  Sum_probs=64.6

Q ss_pred             HHHhhhcceeeeecCCCCceeEEEEeccccccccCcCCCCceeeccCCCCCCCcccchhhhccCCcccccCcccCCCCCC
Q 007127          124 ALCLVMTNAVEVQDDKTGRILGIAVYDKDFSWINHSCSPNACYRFSLSEPNAPSFRNEKKMRIAPHVVFDSTEAETPGKS  203 (617)
Q Consensus       124 ~l~~v~tNsf~v~~~~~g~~lGiavY~P~~S~~NHSC~PNa~~~F~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~  203 (617)
                      +++.+.+|+|.+.+.     .|.++| |.++++||||.||+.+.|+..+..                             
T Consensus       166 a~~~v~sr~~~~~~~-----~~~~l~-P~~d~~NHsc~pn~~~~~~~~~~~-----------------------------  210 (261)
T d2h2ja2         166 AFGILRSRAFSRLRN-----ENLVVV-PMADLINHSAGVTTEDHAYEVKGA-----------------------------  210 (261)
T ss_dssp             HHHHHHHHSBCCC--------CCBCC-TTGGGCEECSSCCSCCCCCC---------------------------------
T ss_pred             HHHHhhccccccccc-----ccccch-hhhHHhhcCCCCCcccccccccCc-----------------------------
Confidence            788999999988655     345789 999999999999999887532110                             


Q ss_pred             CccchhccccCcCCCCCEEEEEEecCCCCCCeEEEeccCCCCCHHHHHHHHhcCCCeeEe
Q 007127          204 DVCISCELKEGSKRHGPRIIVRSIKPINKGEEVTVAYTDLLQPKGMRQSELWSKYQFVCH  263 (617)
Q Consensus       204 ~~~~~~~~~~~~~~~G~~~~VrAir~I~~GEEItisYidll~p~~~Rq~~L~~~y~F~C~  263 (617)
                           +++    ...+..++|||.|+|++||||||+|.... +.    .+|...|||++.
T Consensus       211 -----~~~----~~~~~~~~l~A~r~I~~GEEI~isYG~~~-~n----~~ll~~yGFv~~  256 (261)
T d2h2ja2         211 -----AGL----FSWDYLFSLKSPLSVKAGEQVYIQYDLNK-SN----AELALDYGFIEP  256 (261)
T ss_dssp             ----------------CEEEEECSSCCCTTSBCEECSCSSC-CH----HHHHHHSSCCCS
T ss_pred             -----ccc----cCCCcEEEEEECCCCCCCCEEEEecCCCC-CH----HHHHHhCCCCCC
Confidence                 000    01345899999999999999999997432 32    346678999863
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure