Citrus Sinensis ID: 007131
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 617 | 2.2.26 [Sep-21-2011] | |||||||
| O22161 | 930 | Protein ARABIDILLO 1 OS=A | yes | no | 1.0 | 0.663 | 0.770 | 0.0 | |
| Q9M224 | 928 | Protein ARABIDILLO 2 OS=A | no | no | 1.0 | 0.664 | 0.752 | 0.0 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.343 | 0.299 | 0.318 | 5e-13 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | yes | no | 0.390 | 0.552 | 0.253 | 4e-11 | |
| Q96IG2 | 436 | F-box/LRR-repeat protein | no | no | 0.390 | 0.552 | 0.25 | 8e-11 | |
| Q58DG6 | 436 | F-box/LRR-repeat protein | yes | no | 0.390 | 0.552 | 0.25 | 8e-11 | |
| O22193 | 826 | U-box domain-containing p | no | no | 0.327 | 0.244 | 0.299 | 1e-10 | |
| Q0DV28 | 945 | Armadillo repeat-containi | no | no | 0.254 | 0.166 | 0.316 | 2e-10 | |
| Q9SV36 | 1051 | Armadillo repeat-containi | no | no | 0.246 | 0.144 | 0.314 | 1e-09 | |
| Q5EFZ4 | 556 | Vacuolar protein 8 OS=Kom | yes | no | 0.351 | 0.390 | 0.306 | 2e-09 |
| >sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/627 (77%), Positives = 548/627 (87%), Gaps = 10/627 (1%)
Query: 1 MSRRVRRKVAR-RGKEKVV-LPSYPEV----EDEVIGSEK-NEVVDWTSLPDDTVIQLMS 53
MSRRVRRK+ +GK+KVV LPSYPE E++++ E + VDW SLP DTV+QL +
Sbjct: 1 MSRRVRRKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFT 60
Query: 54 CLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGA 113
CLNYRDRASL+STC+TWR LGAS CLW+SLDLR HK D +MAASLASRC+NL LRFRG
Sbjct: 61 CLNYRDRASLASTCKTWRCLGASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGV 120
Query: 114 ESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKA 173
ESADS+IHL+ARNL E+SGDYC+KITDATLS+IVARHEALESLQLGPDFCERITSDA+KA
Sbjct: 121 ESADSLIHLKARNLIEVSGDYCKKITDATLSMIVARHEALESLQLGPDFCERITSDAIKA 180
Query: 174 IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLS 233
+A CCPKLKKLRLSGIRD+ +AI ALAK CP L D+GFLDCLN+DE ALG V+SVR+LS
Sbjct: 181 VAFCCPKLKKLRLSGIRDVTSEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLS 240
Query: 234 VAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293
VAGTSN+KW + S W KLPKL GLDVSRTD+GP +SR LTSS+SLKVLCALNC VLEE
Sbjct: 241 VAGTSNIKWSIASNNWDKLPKLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEE 300
Query: 294 -ENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIM 350
E+ IS + KGK+LLALFT++F LAS+FA+ TK K++F WR KDK +N+ +
Sbjct: 301 DESLISYNRFKGKVLLALFTNVFDGLASIFADNTKKPKDIFAYWRELMKTTKDKTINDFI 360
Query: 351 TWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIN 410
W+EWI+SH LLRTAE NP+GLDDFWL +GA LLL+LMQS+QEDVQER+ATGLATFVV++
Sbjct: 361 HWIEWIISHTLLRTAECNPEGLDDFWLNEGAALLLNLMQSSQEDVQERSATGLATFVVVD 420
Query: 411 DENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470
DENASIDCGRAEAVMKDGGIRLLL+LAKSWREGLQSEAAKAIANLSVNA +AK+VAEEGG
Sbjct: 421 DENASIDCGRAEAVMKDGGIRLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGG 480
Query: 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530
I ILA LA+SMNRLVAEEAAGGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVL
Sbjct: 481 IKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVL 540
Query: 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590
ERAAGALANLAADDKCSMEVA AGGVHALVMLAR+CK+EGVQEQAARALANLAAHGDSN+
Sbjct: 541 ERAAGALANLAADDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNN 600
Query: 591 NNSAVGQEAGALEALVQLTRSPHEGVR 617
NN+AVGQEAGALEALVQLT+SPHEGVR
Sbjct: 601 NNAAVGQEAGALEALVQLTKSPHEGVR 627
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Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M224|ADLO2_ARATH Protein ARABIDILLO 2 OS=Arabidopsis thaliana GN=At3g60350 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/618 (75%), Positives = 538/618 (87%), Gaps = 1/618 (0%)
Query: 1 MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDR 60
MSRRVR++V GK KV PSY + E + + + V+WTSLP DTV L + LNYRDR
Sbjct: 1 MSRRVRQRVEDNGKYKVDSPSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDR 60
Query: 61 ASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII 120
ASL+STCRTWR+LGAS LWSSLDLRAHK D++MAASLA+RC++LQK+RFRG +SAD+II
Sbjct: 61 ASLASTCRTWRSLGASSFLWSSLDLRAHKFDLSMAASLATRCVDLQKIRFRGVDSADAII 120
Query: 121 HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180
HL+AR+L E+SGDYCRKITDATLS+I ARHEALESLQLGPDFCERITSDA++ IA CCPK
Sbjct: 121 HLKARSLLEISGDYCRKITDATLSMIAARHEALESLQLGPDFCERITSDAIRVIAFCCPK 180
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240
LKKLR+SG+RD+ +AI +LAK CP L+D+GFLDCLN++E ALG V+S+R+LSVAGTSN+
Sbjct: 181 LKKLRVSGMRDVSSEAIESLAKHCPQLSDLGFLDCLNINEEALGKVVSLRYLSVAGTSNI 240
Query: 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300
KW V + W KLPKL+GLDVSRT + I +SRLL SS+SLKVLCALNCP LEE+ + S+
Sbjct: 241 KWKVALENWEKLPKLIGLDVSRTTIDHIAVSRLLKSSQSLKVLCALNCPYLEEDKSYSSN 300
Query: 301 KSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHI 360
+ KGK+LLA+FTD F LAS+FA+ +K KN+F WR+ KDK+++EIM W+EWI+SH
Sbjct: 301 RFKGKVLLAVFTDTFDELASIFADNSKKPKNIFSYWRDLIRKDKSIDEIMLWIEWIISHT 360
Query: 361 LLRTAE-SNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCG 419
LLR AE SN QGL+DFWL QGA LLLSLMQS QEDVQERAATGLATF+V++DENASIDCG
Sbjct: 361 LLRIAESSNSQGLNDFWLNQGATLLLSLMQSAQEDVQERAATGLATFIVVDDENASIDCG 420
Query: 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR 479
RAEAVM+DGGIRLLL+LAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI++LA LA+
Sbjct: 421 RAEAVMRDGGIRLLLELAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGISVLADLAK 480
Query: 480 SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
SMNRLVAEEAAGGLWNLSVGEEHK AIA AGGV ALVDLIF+W G DGVLERAAGALAN
Sbjct: 481 SMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAGALAN 540
Query: 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599
LAADDKCSMEVA AGGVHALVMLAR+CK+EG QEQAARALANLAAHGDSN NN+AVGQEA
Sbjct: 541 LAADDKCSMEVARAGGVHALVMLARNCKYEGAQEQAARALANLAAHGDSNGNNAAVGQEA 600
Query: 600 GALEALVQLTRSPHEGVR 617
GALEALVQLT+SPHEGV+
Sbjct: 601 GALEALVQLTQSPHEGVK 618
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Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WRE 442
L+SL+ ST E +Q A T L IND N S+ + + G I L+ + K+ + E
Sbjct: 468 LVSLLYSTDERIQADAVTCLLNLS-INDNNKSL-------IAESGAIVPLIHVLKTGYLE 519
Query: 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH 502
++ +A + +LSV + + E G I L L S + ++AA L+NLS+ E+
Sbjct: 520 EAKANSAATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHEN 579
Query: 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVML 562
K + +AG V+ LV+L+ G++E+A LANLA + + + GG+ LV +
Sbjct: 580 KTKVIEAGAVRYLVELM----DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEV 635
Query: 563 ARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611
G +E A AL L H NN V +E G + LV LT+S
Sbjct: 636 VELGSARG-KENATAALLQLCTHSPKFCNN--VIRE-GVIPPLVALTKS 680
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 120/280 (42%), Gaps = 39/280 (13%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E V LP + ++++ S L+ + R W L W +DL + D
Sbjct: 17 SNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRD 76
Query: 92 IA--MAASLASRCMN-LQKLRFRGA----ESADSIIHLQARNLRELSGDYCRKITDATLS 144
I + +++ RC L+KL RG ++A RN+ LS + C K TDAT +
Sbjct: 77 IEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCT 136
Query: 145 VIVA-----RHEALESL-------------------QLGPDFCERITSDAVKAIALCCPK 180
+ RH L S QL +C+++T D ++A+ C
Sbjct: 137 SLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGG 196
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVL----SVRFLSVAG 236
LK L L G + +A+ + CP L + CL + + L + ++ L +G
Sbjct: 197 LKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASG 256
Query: 237 TSNMKWGVVSQVWHKLPKLVGLDVSR----TDVGPITISR 272
SN+ +++ + P+L L+V+R TDVG T++R
Sbjct: 257 CSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLAR 296
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Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity. Mus musculus (taxid: 10090) |
| >sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 39/280 (13%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E V LP + ++++ S L+ + R W L W +DL + D
Sbjct: 17 SNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRD 76
Query: 92 IA--MAASLASRCMN-LQKLRFRGA----ESADSIIHLQARNLRELSGDYCRKITDATLS 144
I + +++ RC L+KL RG ++A RN+ L+ + C K TDAT +
Sbjct: 77 IEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCT 136
Query: 145 VIVA-----RHEALESL-------------------QLGPDFCERITSDAVKAIALCCPK 180
+ RH L S QL +C+++T D ++A+ C
Sbjct: 137 SLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGG 196
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVL----SVRFLSVAG 236
LK L L G + +A+ + CP L + CL + + L + ++ L +G
Sbjct: 197 LKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASG 256
Query: 237 TSNMKWGVVSQVWHKLPKLVGLDVSR----TDVGPITISR 272
SN+ +++ + P+L L+V+R TDVG T++R
Sbjct: 257 CSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLAR 296
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Homo sapiens (taxid: 9606) |
| >sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 39/280 (13%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E V LP + ++++ S L+ + R W L W +DL + D
Sbjct: 17 SNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRD 76
Query: 92 IA--MAASLASRCMN-LQKLRFRGA----ESADSIIHLQARNLRELSGDYCRKITDATLS 144
I + +++ RC L+KL RG ++A RN+ L+ + C K TDAT +
Sbjct: 77 IEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCT 136
Query: 145 VIVA-----RHEALESL-------------------QLGPDFCERITSDAVKAIALCCPK 180
+ RH L S QL +C+++T D ++A+ C
Sbjct: 137 SLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGG 196
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVL----SVRFLSVAG 236
LK L L G + +A+ + CP L + CL + + L + ++ L +G
Sbjct: 197 LKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASG 256
Query: 237 TSNMKWGVVSQVWHKLPKLVGLDVSR----TDVGPITISR 272
SN+ +++ + P+L L+V+R TDVG T++R
Sbjct: 257 CSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLAR 296
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Bos taurus (taxid: 9913) |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 15/217 (6%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
L+ ++S+ D Q +A L N +N + + G I LL++L S
Sbjct: 546 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIV-------IGNSGAIVLLVELLYSTDSA 598
Query: 444 LQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503
Q A A+ NLS+N KA+A+ G I L + + + E +A L++LSV EE+K
Sbjct: 599 TQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENK 658
Query: 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA 563
I +G + LVDL+ + G + AA AL NL+ + + +G V L+ L
Sbjct: 659 IKIGQSGAIGPLVDLLGNGTPRGK---KDAATALFNLSIHQENKAMIVQSGAVRYLIDLM 715
Query: 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600
G+ ++A LANLA + +A+GQE G
Sbjct: 716 DPAA--GMVDKAVAVLANLATIPE---GRNAIGQEGG 747
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0DV28|ARK1_ORYSJ Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0152900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGIN-ILAVLARSMN 482
+ ++ G+ +L L KS +Q A K +ANL+ + + EEGG++ +L++L S N
Sbjct: 689 IFEEVGLPNVLALLKSDELEVQIHAVKVVANLAAEDVNQEKIVEEGGLDALLSLLETSEN 748
Query: 483 RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542
+ AG + NL++ ++G I + GG + L ++ K + L AGALANL
Sbjct: 749 TTIHRVTAGAIANLAMNGSNQGLIMNKGGARLLANIASK--TNDPQTLRMVAGALANLCG 806
Query: 543 DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583
++K + + GG+ AL+ + R+ E V Q AR +AN A
Sbjct: 807 NEKLHVMLKQDGGIKALLGMFRTGHNE-VIAQIARGMANFA 846
|
Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9SV36|ARK1_ARATH Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAE 487
GI+ +L L KS +Q +A K +ANL+ + EEGG+ L +L +S N +
Sbjct: 803 GIQKILQLIKSEDLEVQIQAVKVVANLAAEEANQVKIVEEGGVEALLMLVQSSQNSTILR 862
Query: 488 EAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547
A+G + NL++ E+ + I + GG + L ++ K + L AGALANL ++K
Sbjct: 863 VASGAIANLAMNEKSQDLIMNKGGAQLLAKMVTK--TDDPQTLRMVAGALANLCGNEKFL 920
Query: 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583
+ G+ L+ +A+S + + Q AR +AN A
Sbjct: 921 KLLKEEEGIKGLLTMAQSGNIDIIA-QVARGMANFA 955
|
Involved in the control of root hair tip growth by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules. In vitro, binds to polymerized actin through ARM repeats, and to polymerized tubulin through N-terminal motor domain. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 105/235 (44%), Gaps = 18/235 (7%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
+L L+QS+ +VQ A L V ND N + ++ GG+ L+ S
Sbjct: 91 ILILLQSSDAEVQRAACAALGNLAV-NDSNKVL-------IVNMGGLEPLIRQMMSPNIE 142
Query: 444 LQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503
+Q A I NL+ + +A G + L LA+S + V A G L N++ E++
Sbjct: 143 VQCNAVGCITNLATQDQNKSKIATSGALIPLTKLAKSKDLRVQRNATGALLNMTHSLENR 202
Query: 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGG--VHALVM 561
+ +AG V LV L+ SS V AL+N+A D+ ++A + LV
Sbjct: 203 QELVNAGSVPILVQLL---SSTDPDVQYYCTTALSNIAVDEGNRKKLASTEPKLISQLVQ 259
Query: 562 LARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616
L S VQ QA AL NLA+ D+N V AG L LV L S H+ +
Sbjct: 260 LMDSTS-PRVQCQATLALRNLAS--DANYQLEIV--RAGGLPNLVTLLNSTHQPL 309
|
Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Pichia pastoris (taxid: 4922) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 617 | ||||||
| 255541074 | 920 | ubiquitin-protein ligase, putative [Rici | 1.0 | 0.670 | 0.869 | 0.0 | |
| 224137174 | 918 | predicted protein [Populus trichocarpa] | 0.983 | 0.661 | 0.847 | 0.0 | |
| 224063613 | 918 | predicted protein [Populus trichocarpa] | 0.983 | 0.661 | 0.842 | 0.0 | |
| 356568604 | 921 | PREDICTED: protein ARABIDILLO 1-like [Gl | 1.0 | 0.669 | 0.810 | 0.0 | |
| 449431988 | 918 | PREDICTED: protein ARABIDILLO 1-like [Cu | 0.964 | 0.648 | 0.803 | 0.0 | |
| 356531812 | 921 | PREDICTED: protein ARABIDILLO 1-like [Gl | 0.978 | 0.655 | 0.810 | 0.0 | |
| 225453418 | 927 | PREDICTED: protein ARABIDILLO 1-like [Vi | 1.0 | 0.665 | 0.797 | 0.0 | |
| 18406656 | 930 | protein ARABIDILLO 1 [Arabidopsis thalia | 1.0 | 0.663 | 0.770 | 0.0 | |
| 297828211 | 929 | armadillo/beta-catenin repeat family pro | 1.0 | 0.664 | 0.773 | 0.0 | |
| 297820892 | 928 | armadillo/beta-catenin repeat family pro | 1.0 | 0.664 | 0.750 | 0.0 |
| >gi|255541074|ref|XP_002511601.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223548781|gb|EEF50270.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/619 (86%), Positives = 578/619 (93%), Gaps = 2/619 (0%)
Query: 1 MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDR 60
MSRRVRRKVAR+GKEKV L S+PE+EDEV S+ NE VDWT LPDDTVIQL SCLNYRDR
Sbjct: 1 MSRRVRRKVARKGKEKVALSSFPEIEDEVSCSDSNEAVDWTGLPDDTVIQLFSCLNYRDR 60
Query: 61 ASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII 120
ASLSSTCRTWRALG SPCLW+SLDLR+HKCD A A SLA RC+ LQKLRFRGAESAD+II
Sbjct: 61 ASLSSTCRTWRALGISPCLWTSLDLRSHKCDAATATSLAPRCIQLQKLRFRGAESADAII 120
Query: 121 HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180
HLQA+NLRE+SGDYCRKITDA+LSVIVARHE LESLQLGPDFCERI+SDA+KAIA CCPK
Sbjct: 121 HLQAKNLREISGDYCRKITDASLSVIVARHELLESLQLGPDFCERISSDAIKAIAFCCPK 180
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240
LKKLR+SGIRD+ DAINALAK CPNL DIGFLDCLNVDEVALGNV+SVRFLSVAGTSNM
Sbjct: 181 LKKLRVSGIRDVSADAINALAKHCPNLIDIGFLDCLNVDEVALGNVVSVRFLSVAGTSNM 240
Query: 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300
KWGV+S +WHKLPKL+GLDVSRTD+GP +SRLL+SS SLKVLCALNC VLEE+ SA
Sbjct: 241 KWGVISHLWHKLPKLIGLDVSRTDIGPTAVSRLLSSSHSLKVLCALNCSVLEEDATFSAN 300
Query: 301 KSKGKLLLALFTDIFKALASLFAET--TKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILS 358
+ KGKLL+ALFTDIFK L+SLFA+T TK KNVFLDWR+SK +DKNL++IMTWLEWILS
Sbjct: 301 RYKGKLLIALFTDIFKGLSSLFADTTNTKKGKNVFLDWRSSKTQDKNLDDIMTWLEWILS 360
Query: 359 HILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDC 418
H LL TAESNPQGLDDFWLKQGA +LLSLMQS+QEDVQERAATGLATFVVI+DENASIDC
Sbjct: 361 HTLLPTAESNPQGLDDFWLKQGAAILLSLMQSSQEDVQERAATGLATFVVIDDENASIDC 420
Query: 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA 478
GRAEAVM+DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGINILA LA
Sbjct: 421 GRAEAVMRDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGINILAGLA 480
Query: 479 RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538
RSMNRLVAEEAAGGLWNLSVGEEHKGAIA+AGG+KALVDLIFKWSSGGDGVLERAAGALA
Sbjct: 481 RSMNRLVAEEAAGGLWNLSVGEEHKGAIAEAGGIKALVDLIFKWSSGGDGVLERAAGALA 540
Query: 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598
NLAADDKCSMEVALAGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSN+NN+AVGQE
Sbjct: 541 NLAADDKCSMEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNTNNAAVGQE 600
Query: 599 AGALEALVQLTRSPHEGVR 617
AGALEALVQLTRSPHEGVR
Sbjct: 601 AGALEALVQLTRSPHEGVR 619
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137174|ref|XP_002327055.1| predicted protein [Populus trichocarpa] gi|222835370|gb|EEE73805.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/617 (84%), Positives = 563/617 (91%)
Query: 1 MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDR 60
M+RRVRRKVA++ KEKV +P PE+ D + + NE VDWTSLPDDTVIQL SCLNYRDR
Sbjct: 1 MNRRVRRKVAKKSKEKVGVPGNPEIGDADLCPDSNEDVDWTSLPDDTVIQLFSCLNYRDR 60
Query: 61 ASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII 120
ASLSSTC+ WR LG S CLW+SLDLRAHKCD MA SLASRC+NLQKLRFRGAE AD+II
Sbjct: 61 ASLSSTCKIWRVLGLSSCLWTSLDLRAHKCDPGMAVSLASRCVNLQKLRFRGAECADAII 120
Query: 121 HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180
HLQARNLRE+SGDYCRKITDATLS+IVARHEALE+LQLGPDFCERI+SDA+KA A CCPK
Sbjct: 121 HLQARNLREISGDYCRKITDATLSMIVARHEALETLQLGPDFCERISSDAIKATAFCCPK 180
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240
LKKLRLSG+RD+ + INALAK CPNL DIG LDCL VDEVALGNV+SV FLSVAGTSNM
Sbjct: 181 LKKLRLSGLRDVSAEVINALAKHCPNLIDIGLLDCLKVDEVALGNVVSVLFLSVAGTSNM 240
Query: 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300
KWGVVS +WHKLPKL+GLDVSRTD+GP +SRLL+ S SLKVLCA+NCPVLEE+N+ S
Sbjct: 241 KWGVVSHLWHKLPKLIGLDVSRTDIGPSAVSRLLSLSPSLKVLCAMNCPVLEEDNSFSVN 300
Query: 301 KSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHI 360
K KGKLLLALFTDIFK LASLFA+TTK KNV LDWRN K KDKNL+EIMTWLEWILSH
Sbjct: 301 KYKGKLLLALFTDIFKGLASLFADTTKTGKNVLLDWRNLKTKDKNLDEIMTWLEWILSHT 360
Query: 361 LLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGR 420
LLRTAESNPQGLD FWLKQGA +LLSLMQS+QE+VQERAATGLATFVVI+DENASIDCGR
Sbjct: 361 LLRTAESNPQGLDAFWLKQGATILLSLMQSSQEEVQERAATGLATFVVIDDENASIDCGR 420
Query: 421 AEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480
AEAVM+DGGIRLLL+LAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGI ILA LA S
Sbjct: 421 AEAVMRDGGIRLLLNLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIQILAGLASS 480
Query: 481 MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540
MNRLVAEEAAGGLWNLSVGEEHKGAIA+AGGVKALVDLIFKW SGGDGVLERAAGALANL
Sbjct: 481 MNRLVAEEAAGGLWNLSVGEEHKGAIAEAGGVKALVDLIFKWFSGGDGVLERAAGALANL 540
Query: 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600
AADDKCSMEVALAGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSN+NN+AVGQEAG
Sbjct: 541 AADDKCSMEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNTNNAAVGQEAG 600
Query: 601 ALEALVQLTRSPHEGVR 617
ALEALVQLTRS HEGVR
Sbjct: 601 ALEALVQLTRSLHEGVR 617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063613|ref|XP_002301228.1| predicted protein [Populus trichocarpa] gi|222842954|gb|EEE80501.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/617 (84%), Positives = 562/617 (91%)
Query: 1 MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDR 60
M+RRVR+KVA++ KEKV LPS PE+ D + + NE VDWTSLPDDTVIQL SCLNYRDR
Sbjct: 1 MNRRVRQKVAKKSKEKVELPSNPEIGDAGLCPDSNEDVDWTSLPDDTVIQLFSCLNYRDR 60
Query: 61 ASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII 120
ASLSSTC+TWR LG S CLW SLDLRAHKCD MA SLASRC+NLQK+RFRGAESAD+II
Sbjct: 61 ASLSSTCKTWRVLGLSSCLWISLDLRAHKCDPGMAVSLASRCVNLQKIRFRGAESADAII 120
Query: 121 HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180
HLQARNLRE+SGDYCRKITDATLS+IVARHEALE+LQLGPDFCE+++SDA+KAIA CCPK
Sbjct: 121 HLQARNLREISGDYCRKITDATLSMIVARHEALETLQLGPDFCEKVSSDAIKAIAFCCPK 180
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240
LKKLRLSG+RD+ D INALAK CPNL DIGFLDCL VDE ALGNV+SV FLSVAGTSNM
Sbjct: 181 LKKLRLSGLRDVSADVINALAKHCPNLIDIGFLDCLKVDEAALGNVVSVHFLSVAGTSNM 240
Query: 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300
KWGVVS +WHKLPKL+GLDVSRTD+ P +SRLL+ S SLKVLCA+NCPVLEE+N S
Sbjct: 241 KWGVVSHLWHKLPKLIGLDVSRTDIDPSAVSRLLSLSPSLKVLCAMNCPVLEEDNAFSVN 300
Query: 301 KSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHI 360
K KGKLLLALF DIFK LASLFA+ TK KNV L+WRN K KDKN++EIM+WLEWILSH
Sbjct: 301 KYKGKLLLALFNDIFKGLASLFADITKMGKNVLLEWRNLKTKDKNVDEIMSWLEWILSHT 360
Query: 361 LLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGR 420
LLRTAESNPQGLD FWLK GA +LLSLMQS+QE+VQERAATGLATFVVI+DENASIDCGR
Sbjct: 361 LLRTAESNPQGLDVFWLKLGAPILLSLMQSSQEEVQERAATGLATFVVIDDENASIDCGR 420
Query: 421 AEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480
AEAVM+DGGIRLLL+LAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGI ILA LARS
Sbjct: 421 AEAVMRDGGIRLLLNLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARS 480
Query: 481 MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540
MNRLVAEEAAGGLWNLSVGEEHKGAIA+AGGVKALVDLIFKWSSG DGVLERAAGALANL
Sbjct: 481 MNRLVAEEAAGGLWNLSVGEEHKGAIAEAGGVKALVDLIFKWSSGSDGVLERAAGALANL 540
Query: 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600
AADDKCSMEVALAGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSNSNN+AVGQEAG
Sbjct: 541 AADDKCSMEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAG 600
Query: 601 ALEALVQLTRSPHEGVR 617
ALEALVQLTRS HEGVR
Sbjct: 601 ALEALVQLTRSLHEGVR 617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568604|ref|XP_003552500.1| PREDICTED: protein ARABIDILLO 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/619 (81%), Positives = 560/619 (90%), Gaps = 2/619 (0%)
Query: 1 MSRRVRRKVARRGKEKVVLPSYPEVEDEVIG--SEKNEVVDWTSLPDDTVIQLMSCLNYR 58
M+RRVRRK+AR+ K VV S+PEV+DEV+ +++ VVDW LPDDTVIQL+SCL+YR
Sbjct: 1 MNRRVRRKLARKSKGNVVQSSFPEVQDEVLDLETQRQGVVDWKCLPDDTVIQLLSCLSYR 60
Query: 59 DRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS 118
DRASLSSTC+TWR+LG+ PCLWSSLDLR+H+ D MA+SLA RC++LQKLRFRGAESAD+
Sbjct: 61 DRASLSSTCKTWRSLGSLPCLWSSLDLRSHRFDAGMASSLAPRCVHLQKLRFRGAESADA 120
Query: 119 IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178
IIHLQARNLRELSGDYCRKITDATLSVIVARHE LESLQLGPDFCERI+SDA+KAIA CC
Sbjct: 121 IIHLQARNLRELSGDYCRKITDATLSVIVARHEFLESLQLGPDFCERISSDAIKAIAHCC 180
Query: 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTS 238
PKL KLRLSGIRD+ DAINALAK C LTDIGF+DCLNVDEVALGNVLSVRFLSVAGTS
Sbjct: 181 PKLNKLRLSGIRDVNADAINALAKHCSKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTS 240
Query: 239 NMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNIS 298
+MKWGVVS +WHKLP L+GLDVSRTD+GP + R+L+ S++L+VL AL+CP+LEE+ + S
Sbjct: 241 SMKWGVVSHLWHKLPNLIGLDVSRTDIGPSALLRMLSLSQNLRVLIALSCPILEEDTSFS 300
Query: 299 AVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILS 358
A K K KLL++L TDIFK LASLF + TK KNVFLDWR SKN DK+LNEI+ WLEW+LS
Sbjct: 301 ASKYKSKLLISLRTDIFKGLASLFFDNTKRGKNVFLDWRTSKNNDKDLNEIIPWLEWMLS 360
Query: 359 HILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDC 418
H LLR+AE+ QGLD FW++QG LLLSLMQS+QEDVQERAATGLATFVVI+DENASIDC
Sbjct: 361 HTLLRSAENPQQGLDSFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDC 420
Query: 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA 478
GRAEAVM+DGGIRLLL LAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGI ILA LA
Sbjct: 421 GRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLA 480
Query: 479 RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538
RSMN+LVAEEAAGGLWNLSVGEEHKGAIA+AGG++ALVDLIFKWSS GDGVLERAAGALA
Sbjct: 481 RSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALA 540
Query: 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598
NLAADDKCS EVA AGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSNSNN+AVGQE
Sbjct: 541 NLAADDKCSTEVATAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQE 600
Query: 599 AGALEALVQLTRSPHEGVR 617
AGAL+ALVQLTRSPHEGVR
Sbjct: 601 AGALDALVQLTRSPHEGVR 619
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449431988|ref|XP_004133782.1| PREDICTED: protein ARABIDILLO 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/605 (80%), Positives = 539/605 (89%)
Query: 13 GKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRA 72
GKEK++LPSYPE++ E+ + + VDWTSLPDDTVIQL SCLNYRDRA+ SSTCRTWR
Sbjct: 13 GKEKLILPSYPEIDSEIADLDNKQTVDWTSLPDDTVIQLFSCLNYRDRANFSSTCRTWRL 72
Query: 73 LGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSG 132
LG S CLW+S DLRAHK D MA SLA RC NLQKLRFRGAESAD+II L A+NLRE+SG
Sbjct: 73 LGLSSCLWTSFDLRAHKIDATMAGSLALRCENLQKLRFRGAESADAIILLLAKNLREISG 132
Query: 133 DYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDI 192
DYCRKITDATLS I ARH+ALESLQLGPDFCERI+SDA+KAIA+CC KLKKLRLSGI+D+
Sbjct: 133 DYCRKITDATLSAIAARHQALESLQLGPDFCERISSDAIKAIAICCHKLKKLRLSGIKDV 192
Query: 193 CGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252
+A+NAL+K CPNL DIGF+DC N+DE+ALGNV SVRFLSVAGTSNMKWG VS WHKL
Sbjct: 193 SAEALNALSKHCPNLLDIGFIDCFNIDEMALGNVSSVRFLSVAGTSNMKWGAVSHQWHKL 252
Query: 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFT 312
P L+GLDVSRTD+GP+ +SRL++SS+SLKVLCA NC VLE++ + K KGKLLLALFT
Sbjct: 253 PNLIGLDVSRTDIGPVAVSRLMSSSQSLKVLCAFNCSVLEDDAGFTVSKYKGKLLLALFT 312
Query: 313 DIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGL 372
D+ K +ASLF +TT +N+ LDWRN K K+K+L+EIM WLEWILSH LLR AESN GL
Sbjct: 313 DVVKEIASLFVDTTTKGENMLLDWRNLKIKNKSLDEIMMWLEWILSHNLLRIAESNQHGL 372
Query: 373 DDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRL 432
D+FWL QGA LLLSLMQS+QEDVQERAATGLATFVVI+DENASID GRAE VM+ GGIRL
Sbjct: 373 DNFWLNQGAALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDSGRAEEVMRRGGIRL 432
Query: 433 LLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGG 492
LL+LAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGI+ILA LARSMNRLVAEEAAGG
Sbjct: 433 LLNLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIDILAGLARSMNRLVAEEAAGG 492
Query: 493 LWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL 552
LWNLSVGEEHKGAIA+AGGV+ALVDLIFKWSSGGDGVLERAAGALANLAADD+CS EVAL
Sbjct: 493 LWNLSVGEEHKGAIAEAGGVRALVDLIFKWSSGGDGVLERAAGALANLAADDRCSTEVAL 552
Query: 553 AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612
AGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSN+NNSAVGQEAGALEALVQLT SP
Sbjct: 553 AGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNTNNSAVGQEAGALEALVQLTHSP 612
Query: 613 HEGVR 617
HEGVR
Sbjct: 613 HEGVR 617
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531812|ref|XP_003534470.1| PREDICTED: protein ARABIDILLO 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/606 (81%), Positives = 544/606 (89%), Gaps = 2/606 (0%)
Query: 14 KEKVVLPSYPEVEDEVIGSE--KNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWR 71
K VV S+PE +DEV+ E + VDW LPDDTVIQL+SCL+Y+DRASLSSTC+TWR
Sbjct: 14 KGNVVQSSFPEDQDEVLDLEPQRQGFVDWKCLPDDTVIQLLSCLSYQDRASLSSTCKTWR 73
Query: 72 ALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELS 131
+LG+S CLWSSLDLR+H+ D MA+SLA RC++LQKLRFRGAESAD+IIHL+ARNLRELS
Sbjct: 74 SLGSSLCLWSSLDLRSHRFDAGMASSLAPRCVHLQKLRFRGAESADAIIHLRARNLRELS 133
Query: 132 GDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD 191
GDYCRKITDATLSVIVARHE LESLQLGPDFCERI+SDA+KAIA CCPKL KLRLSGIRD
Sbjct: 134 GDYCRKITDATLSVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPKLNKLRLSGIRD 193
Query: 192 ICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHK 251
+ DAINALAK CP LTDIGF+DCLNVDEVALGNVLSVRFLSVAGTS+MKWGVVS +WHK
Sbjct: 194 VNADAINALAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHK 253
Query: 252 LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALF 311
LP L+GLDVSRTD+GP + R+L+ S++L+VL ALNCP+LEE+ + SA K K KLL++L
Sbjct: 254 LPNLIGLDVSRTDIGPSALLRMLSLSQNLRVLIALNCPILEEDTSFSASKYKNKLLISLR 313
Query: 312 TDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQG 371
TDIFK LASL + T+ NVFLDWR SKN DK+LNEI+ WLEW+LSH LLR+AES QG
Sbjct: 314 TDIFKGLASLLFDNTRRGNNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQG 373
Query: 372 LDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIR 431
LD FW++QG LLLSLMQS+QEDVQERAATGLATFVVI+DENASIDCGRAEAVM+DGGIR
Sbjct: 374 LDSFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIR 433
Query: 432 LLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAG 491
LLL LAKSWREGLQSEAAKAIANLSVNA VAKAVAEEGGI ILA LARSMN+LVAEEAAG
Sbjct: 434 LLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIQILAGLARSMNKLVAEEAAG 493
Query: 492 GLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA 551
GLWNLSVGEEHKGAIA+AGG++ALVDLIFKWSS GDGVLERAAGALANLAADDKCS EVA
Sbjct: 494 GLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVA 553
Query: 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611
LAGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSNSNN+AVGQEAGALEALVQLT S
Sbjct: 554 LAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTCS 613
Query: 612 PHEGVR 617
PHEGVR
Sbjct: 614 PHEGVR 619
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453418|ref|XP_002274749.1| PREDICTED: protein ARABIDILLO 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/626 (79%), Positives = 559/626 (89%), Gaps = 9/626 (1%)
Query: 1 MSRRVRRKVARRGKEKVVLPSYPEVE--DEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYR 58
MSRR+RRKV ++GKEKVVLPSYPE+E D +G E +WTSLPDDTVIQL SCLNYR
Sbjct: 1 MSRRLRRKVVKKGKEKVVLPSYPEIENDDGGLGFENKGFANWTSLPDDTVIQLFSCLNYR 60
Query: 59 DRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS 118
DRA+L+STCRTWR LGASPCLW+SLDLRAH+CD A AASLASR MNLQKLRFRG E+AD+
Sbjct: 61 DRANLASTCRTWRLLGASPCLWNSLDLRAHRCDSAAAASLASRGMNLQKLRFRGQETADA 120
Query: 119 IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178
IIHLQAR LRE+SGDYCRKI DATLSVI ARHE LESLQLGPDFCE+IT+DA+KAIA+CC
Sbjct: 121 IIHLQARGLREISGDYCRKINDATLSVIAARHEQLESLQLGPDFCEKITTDAIKAIAVCC 180
Query: 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTS 238
PKL KLRLSG++D+ GDAI+ALAK C NLTD+GF+DCL V+E+ALGN+LS+RFLSVAGT+
Sbjct: 181 PKLNKLRLSGVKDVHGDAIDALAKHCRNLTDLGFMDCLKVEELALGNILSLRFLSVAGTT 240
Query: 239 NMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNIS 298
N+KWG++S +W KLP L GLDVSRTD+ P SRL SS+SLKVLCALNC LE++
Sbjct: 241 NLKWGLISHLWGKLPNLTGLDVSRTDITPNAASRLFASSQSLKVLCALNCSALEQDVTFF 300
Query: 299 AV-------KSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMT 351
A +KGKLLLA F+DIFK +ASLFA+T+KN+++VF +WRN KNKDKNL+ IM
Sbjct: 301 ATYNNNNNINNKGKLLLAQFSDIFKGIASLFADTSKNKRDVFFEWRNGKNKDKNLDMIMN 360
Query: 352 WLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIND 411
WLEW LSH LLR AESNPQGLD FWLKQGA LLLSLMQS+QEDVQE+AAT LATFVVI+D
Sbjct: 361 WLEWALSHTLLRIAESNPQGLDTFWLKQGAALLLSLMQSSQEDVQEKAATALATFVVIDD 420
Query: 412 ENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI 471
ENASIDCGRAEAVM+DGGIRLLL+LA+SWREGLQSEAAKAIANLSVNA VAKAVA+EGGI
Sbjct: 421 ENASIDCGRAEAVMRDGGIRLLLNLARSWREGLQSEAAKAIANLSVNANVAKAVADEGGI 480
Query: 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531
NIL+ LARSMNR VAEEAAGGLWNLSVGEEHKGAIA+AGGVK+LVDLIFKWS+GGDGVLE
Sbjct: 481 NILSSLARSMNRSVAEEAAGGLWNLSVGEEHKGAIAEAGGVKSLVDLIFKWSAGGDGVLE 540
Query: 532 RAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591
RAAGALANLAADDKCSMEVALAGGVHALVMLAR+CKFEGVQEQAARALANLAAHGDSNSN
Sbjct: 541 RAAGALANLAADDKCSMEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSN 600
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVR 617
N+AVGQEAGALEALV LT+SPHEGVR
Sbjct: 601 NAAVGQEAGALEALVLLTKSPHEGVR 626
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406656|ref|NP_566029.1| protein ARABIDILLO 1 [Arabidopsis thaliana] gi|75219086|sp|O22161.1|ADLO1_ARATH RecName: Full=Protein ARABIDILLO 1; AltName: Full=F-box only protein 5 gi|2344894|gb|AAC31834.1| F-box protein family, AtFBX5 [Arabidopsis thaliana] gi|330255388|gb|AEC10482.1| protein ARABIDILLO 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/627 (77%), Positives = 548/627 (87%), Gaps = 10/627 (1%)
Query: 1 MSRRVRRKVAR-RGKEKVV-LPSYPEV----EDEVIGSEK-NEVVDWTSLPDDTVIQLMS 53
MSRRVRRK+ +GK+KVV LPSYPE E++++ E + VDW SLP DTV+QL +
Sbjct: 1 MSRRVRRKLEEEKGKDKVVVLPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFT 60
Query: 54 CLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGA 113
CLNYRDRASL+STC+TWR LGAS CLW+SLDLR HK D +MAASLASRC+NL LRFRG
Sbjct: 61 CLNYRDRASLASTCKTWRCLGASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGV 120
Query: 114 ESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKA 173
ESADS+IHL+ARNL E+SGDYC+KITDATLS+IVARHEALESLQLGPDFCERITSDA+KA
Sbjct: 121 ESADSLIHLKARNLIEVSGDYCKKITDATLSMIVARHEALESLQLGPDFCERITSDAIKA 180
Query: 174 IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLS 233
+A CCPKLKKLRLSGIRD+ +AI ALAK CP L D+GFLDCLN+DE ALG V+SVR+LS
Sbjct: 181 VAFCCPKLKKLRLSGIRDVTSEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLS 240
Query: 234 VAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293
VAGTSN+KW + S W KLPKL GLDVSRTD+GP +SR LTSS+SLKVLCALNC VLEE
Sbjct: 241 VAGTSNIKWSIASNNWDKLPKLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEE 300
Query: 294 -ENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIM 350
E+ IS + KGK+LLALFT++F LAS+FA+ TK K++F WR KDK +N+ +
Sbjct: 301 DESLISYNRFKGKVLLALFTNVFDGLASIFADNTKKPKDIFAYWRELMKTTKDKTINDFI 360
Query: 351 TWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIN 410
W+EWI+SH LLRTAE NP+GLDDFWL +GA LLL+LMQS+QEDVQER+ATGLATFVV++
Sbjct: 361 HWIEWIISHTLLRTAECNPEGLDDFWLNEGAALLLNLMQSSQEDVQERSATGLATFVVVD 420
Query: 411 DENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470
DENASIDCGRAEAVMKDGGIRLLL+LAKSWREGLQSEAAKAIANLSVNA +AK+VAEEGG
Sbjct: 421 DENASIDCGRAEAVMKDGGIRLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGG 480
Query: 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530
I ILA LA+SMNRLVAEEAAGGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVL
Sbjct: 481 IKILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVL 540
Query: 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590
ERAAGALANLAADDKCSMEVA AGGVHALVMLAR+CK+EGVQEQAARALANLAAHGDSN+
Sbjct: 541 ERAAGALANLAADDKCSMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNN 600
Query: 591 NNSAVGQEAGALEALVQLTRSPHEGVR 617
NN+AVGQEAGALEALVQLT+SPHEGVR
Sbjct: 601 NNAAVGQEAGALEALVQLTKSPHEGVR 627
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828211|ref|XP_002881988.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297327827|gb|EFH58247.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/626 (77%), Positives = 544/626 (86%), Gaps = 9/626 (1%)
Query: 1 MSRRVRRKVAR-RGKEKVV-LPSYPEV----EDEVIGSEKNEVVDWTSLPDDTVIQLMSC 54
MSRRVRRK+ +GK+KVV LPSYPE ED V + VDWTSLP DTV+QL +C
Sbjct: 1 MSRRVRRKLEEEKGKDKVVVLPSYPETSISNEDLVAPQLLHGFVDWTSLPYDTVLQLFTC 60
Query: 55 LNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAE 114
LNYRDRASL+STC+TWR LGAS CLWSSLDLR HK D +MAASLASRC+NL LRFRG E
Sbjct: 61 LNYRDRASLASTCKTWRCLGASSCLWSSLDLRPHKFDASMAASLASRCVNLHNLRFRGVE 120
Query: 115 SADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAI 174
SADS+IHL+ARNL E+SGDYCRKITDATLS+IVARHEALESLQLGPDFCE+ITSDA+KA+
Sbjct: 121 SADSLIHLKARNLLEVSGDYCRKITDATLSMIVARHEALESLQLGPDFCEKITSDAIKAV 180
Query: 175 ALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSV 234
A CCPKL KLRLSGIRD+ +AI ALAK CP L+D+GFLDCLN+DE A+G V+SVR+LSV
Sbjct: 181 AFCCPKLTKLRLSGIRDVTSEAIEALAKHCPQLSDLGFLDCLNIDEEAMGKVVSVRYLSV 240
Query: 235 AGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294
AGTSN+KW S W KLPKL GLDVSRTD+GP +SR LTSS+SLKVLCALNC VLEE+
Sbjct: 241 AGTSNIKWSTASNSWDKLPKLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEED 300
Query: 295 NNI-SAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIMT 351
+ S+ + KGK+LLALFT++F LAS+FA+ TK K++F WR KDK +++ M
Sbjct: 301 TSFFSSNRFKGKVLLALFTNVFDGLASIFADKTKKPKDIFAYWRELMKTTKDKTVDDFMH 360
Query: 352 WLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVIND 411
W+EWI+SH LLRTAE NPQGLDDFWL QGA LLL+LMQS+QEDVQER+ATGLATFVVI+D
Sbjct: 361 WIEWIISHTLLRTAECNPQGLDDFWLNQGAALLLNLMQSSQEDVQERSATGLATFVVIDD 420
Query: 412 ENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI 471
ENA+IDCGRAEAVMKDGGIRLLL+LAKSWREGLQSEAAKAIANLSVNA VAK+VAEEGGI
Sbjct: 421 ENANIDCGRAEAVMKDGGIRLLLELAKSWREGLQSEAAKAIANLSVNANVAKSVAEEGGI 480
Query: 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531
ILA LA+SMNRLVAEEAAGGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVLE
Sbjct: 481 KILAGLAKSMNRLVAEEAAGGLWNLSVGEEHKNAIALAGGVKALVDLIFRWPNGCDGVLE 540
Query: 532 RAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591
RAAGALANLAADDKCSMEVA AGGVHALVMLAR+CK+EGVQEQAARALANLAAHGDSN+N
Sbjct: 541 RAAGALANLAADDKCSMEVATAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNN 600
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVR 617
N+AVGQEAGALEALVQLT+S HEGVR
Sbjct: 601 NAAVGQEAGALEALVQLTQSLHEGVR 626
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820892|ref|XP_002878329.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324167|gb|EFH54588.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/618 (75%), Positives = 536/618 (86%), Gaps = 1/618 (0%)
Query: 1 MSRRVRRKVARRGKEKVVLPSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDR 60
MSRRVR++V +GK KV PSYP + DE + + E DWTSLP DTV+ L + LNYRDR
Sbjct: 1 MSRRVRQRVEEKGKNKVDSPSYPVIGDEDLAPKVQEYADWTSLPYDTVLYLFTRLNYRDR 60
Query: 61 ASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII 120
ASL+STC+TWR+LGAS CLWSSLDLRAHK D++MAASLA+RC +LQK+RFRG +SAD+II
Sbjct: 61 ASLASTCKTWRSLGASSCLWSSLDLRAHKFDLSMAASLATRCADLQKIRFRGVDSADAII 120
Query: 121 HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180
HL+AR L E+SGDYCRKITDATLS+I ARHEALESLQLGPDFCE+ITSDA++ IA CCPK
Sbjct: 121 HLKARTLLEISGDYCRKITDATLSMIAARHEALESLQLGPDFCEKITSDAIRVIAFCCPK 180
Query: 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240
LKKLR+SG+RD+ +AI +LAK CP L+D+GFLDCLN++E ALG V+S+R+LSVAGTSN+
Sbjct: 181 LKKLRVSGMRDVSSEAIESLAKHCPQLSDLGFLDCLNINEEALGKVVSLRYLSVAGTSNI 240
Query: 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300
KW V W KLPKL GLDVSRT + I +SRLL SS+SLKVLCALNCP LEE+ + S+
Sbjct: 241 KWKVALDNWEKLPKLTGLDVSRTTIDHIAVSRLLKSSQSLKVLCALNCPYLEEDKSYSSN 300
Query: 301 KSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHI 360
+ KGK+LLA+FTD F LAS+FA+ +K K++F WR+ KDK+ +EIM W+EWI+SH
Sbjct: 301 RFKGKVLLAIFTDTFDELASIFADNSKKPKDMFSYWRDLIRKDKSTDEIMLWIEWIISHT 360
Query: 361 LLRTAE-SNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCG 419
LLR AE SN QGL+DFWL QGA LLLSLMQS QEDVQERAATGLATF+V++DENASIDCG
Sbjct: 361 LLRIAESSNSQGLNDFWLNQGATLLLSLMQSAQEDVQERAATGLATFIVVDDENASIDCG 420
Query: 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR 479
RAEAVM+DGGIRLLL+LAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI++LA LA+
Sbjct: 421 RAEAVMRDGGIRLLLELAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGISVLADLAK 480
Query: 480 SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
SMNRLVAEEAAGGLWNLSVGEEHK AIA AGGV ALVDLIF+W +G DGVLERAAGALAN
Sbjct: 481 SMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFRWPNGCDGVLERAAGALAN 540
Query: 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599
LAADDKCS EVA AGGVHALVMLAR+CK+EG QEQAARALANLAAHGDSN NN+AVGQEA
Sbjct: 541 LAADDKCSTEVARAGGVHALVMLARNCKYEGAQEQAARALANLAAHGDSNDNNAAVGQEA 600
Query: 600 GALEALVQLTRSPHEGVR 617
GALE LVQLT+SPHEGV+
Sbjct: 601 GALEGLVQLTQSPHEGVK 618
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 617 | ||||||
| TAIR|locus:2055033 | 930 | ARABIDILLO-1 "AT2G44900" [Arab | 0.970 | 0.644 | 0.724 | 1.9e-234 | |
| TAIR|locus:2103351 | 928 | ARABIDILLO-2 "AT3G60350" [Arab | 0.969 | 0.644 | 0.704 | 5.6e-226 | |
| RGD|621722 | 276 | Fbxl20 "F-box and leucine-rich | 0.307 | 0.688 | 0.281 | 2.6e-11 | |
| MGI|MGI:2443416 | 790 | Fbxl13 "F-box and leucine-rich | 0.184 | 0.144 | 0.260 | 1.3e-10 | |
| MGI|MGI:1919444 | 436 | Fbxl20 "F-box and leucine-rich | 0.307 | 0.435 | 0.281 | 1.5e-10 | |
| UNIPROTKB|A6H779 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.435 | 0.635 | 0.265 | 2.3e-10 | |
| UNIPROTKB|Q58DG6 | 436 | FBXL20 "F-box/LRR-repeat prote | 0.307 | 0.435 | 0.276 | 3.2e-10 | |
| UNIPROTKB|Q96IG2 | 436 | FBXL20 "F-box/LRR-repeat prote | 0.307 | 0.435 | 0.276 | 3.2e-10 | |
| UNIPROTKB|F1NHD2 | 423 | FBXL2 "Uncharacterized protein | 0.421 | 0.614 | 0.240 | 6.5e-10 | |
| TAIR|locus:505006471 | 610 | AT4G15475 "AT4G15475" [Arabido | 0.411 | 0.416 | 0.237 | 1.7e-09 |
| TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2261 (801.0 bits), Expect = 1.9e-234, P = 1.9e-234
Identities = 440/607 (72%), Positives = 501/607 (82%)
Query: 19 LPSYPEV----EDEVIGSEK-NEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRAL 73
LPSYPE E++++ E + VDW SLP DTV+QL +CLNYRDRASL+STC+TWR L
Sbjct: 21 LPSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFTCLNYRDRASLASTCKTWRCL 80
Query: 74 GASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGD 133
GAS CLW+SLDLR HK D +MAASLASRC+NL LRFRG ESADS+IHL+ARNL E+SGD
Sbjct: 81 GASSCLWTSLDLRPHKFDASMAASLASRCVNLHYLRFRGVESADSLIHLKARNLIEVSGD 140
Query: 134 YCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDIC 193
YC+KITDATLS+IVARHEALESLQLGPDFCERITSDA+KA+A CCPKLKKLRLSGIRD+
Sbjct: 141 YCKKITDATLSMIVARHEALESLQLGPDFCERITSDAIKAVAFCCPKLKKLRLSGIRDVT 200
Query: 194 GDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253
+AI ALAK CP L D+GFLDCLN+DE ALG V+SVR+LSVAGTSN+KW + S W KLP
Sbjct: 201 SEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLSVAGTSNIKWSIASNNWDKLP 260
Query: 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN-ISAVKSKGKLLLALFT 312
KL GLDVSRTD+GP +SR LTSS+SLKVLCALNC VLEE+ + IS + KGK+LLALFT
Sbjct: 261 KLTGLDVSRTDIGPTAVSRFLTSSQSLKVLCALNCHVLEEDESLISYNRFKGKVLLALFT 320
Query: 313 DIFKALASLFAETTKNEKNVFLDWRN--SKNKDKNLNEIMTWLEWILSHILLRTAESNPQ 370
++F LAS+FA+ TK K++F WR KDK +N+ + W+EWI+SH LLRTAE NP+
Sbjct: 321 NVFDGLASIFADNTKKPKDIFAYWRELMKTTKDKTINDFIHWIEWIISHTLLRTAECNPE 380
Query: 371 GLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI 430
GLDDFWL +GA LLL+LMQS+QEDVQER+ATGLATFVV++DENASIDCGRAEAVMKDGGI
Sbjct: 381 GLDDFWLNEGAALLLNLMQSSQEDVQERSATGLATFVVVDDENASIDCGRAEAVMKDGGI 440
Query: 431 RLLLDLAKSWREGLQSEAAKAIANLSVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAA 490
RLLL+LAKSWREGLQSEAAKAIANLSVN I ILA LA+SMNRLVAEEAA
Sbjct: 441 RLLLELAKSWREGLQSEAAKAIANLSVNANIAKSVAEEGGIKILAGLAKSMNRLVAEEAA 500
Query: 491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEV 550
GGLWNLSVGEEHK AIA AGGVKALVDLIF+W +G DGVLER DDKCSMEV
Sbjct: 501 GGLWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVLERAAGALANLAADDKCSMEV 560
Query: 551 ALAGGVHALVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTR 610
A AGGVHALVMLAR+CK+EGVQEQ HGDSN+NN+AVGQEAGALEALVQLT+
Sbjct: 561 AKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTK 620
Query: 611 SPHEGVR 617
SPHEGVR
Sbjct: 621 SPHEGVR 627
|
|
| TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2181 (772.8 bits), Expect = 5.6e-226, P = 5.6e-226
Identities = 422/599 (70%), Positives = 493/599 (82%)
Query: 20 PSYPEVEDEVIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCL 79
PSY + E + + + V+WTSLP DTV L + LNYRDRASL+STCRTWR+LGAS L
Sbjct: 20 PSYTVIGVEDLAPKVQQYVNWTSLPYDTVFHLFTRLNYRDRASLASTCRTWRSLGASSFL 79
Query: 80 WSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKIT 139
WSSLDLRAHK D++MAASLA+RC++LQK+RFRG +SAD+IIHL+AR+L E+SGDYCRKIT
Sbjct: 80 WSSLDLRAHKFDLSMAASLATRCVDLQKIRFRGVDSADAIIHLKARSLLEISGDYCRKIT 139
Query: 140 DATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINA 199
DATLS+I ARHEALESLQLGPDFCERITSDA++ IA CCPKLKKLR+SG+RD+ +AI +
Sbjct: 140 DATLSMIAARHEALESLQLGPDFCERITSDAIRVIAFCCPKLKKLRVSGMRDVSSEAIES 199
Query: 200 LAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259
LAK CP L+D+GFLDCLN++E ALG V+S+R+LSVAGTSN+KW V + W KLPKL+GLD
Sbjct: 200 LAKHCPQLSDLGFLDCLNINEEALGKVVSLRYLSVAGTSNIKWKVALENWEKLPKLIGLD 259
Query: 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTDIFKALA 319
VSRT + I +SRLL SS+SLKVLCALNCP LEE+ + S+ + KGK+LLA+FTD F LA
Sbjct: 260 VSRTTIDHIAVSRLLKSSQSLKVLCALNCPYLEEDKSYSSNRFKGKVLLAVFTDTFDELA 319
Query: 320 SLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWLEWILSHILLRTAES-NPQGLDDFWLK 378
S+FA+ +K KN+F WR+ KDK+++EIM W+EWI+SH LLR AES N QGL+DFWL
Sbjct: 320 SIFADNSKKPKNIFSYWRDLIRKDKSIDEIMLWIEWIISHTLLRIAESSNSQGLNDFWLN 379
Query: 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438
QGA LLLSLMQS QEDVQERAATGLATF+V++DENASIDCGRAEAVM+DGGIRLLL+LAK
Sbjct: 380 QGATLLLSLMQSAQEDVQERAATGLATFIVVDDENASIDCGRAEAVMRDGGIRLLLELAK 439
Query: 439 SWREGLQSEAAKAIANLSVNXXXXXXXXXXXXINILAVLARSMNRLVAEEAAGGLWNLSV 498
SWREGLQSEAAKAIANLSVN I++LA LA+SMNRLVAEEAAGGLWNLSV
Sbjct: 440 SWREGLQSEAAKAIANLSVNAKVAKAVAEEGGISVLADLAKSMNRLVAEEAAGGLWNLSV 499
Query: 499 GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERXXXXXXXXXXDDKCSMEVALAGGVHA 558
GEEHK AIA AGGV ALVDLIF+W G DGVLER DDKCSMEVA AGGVHA
Sbjct: 500 GEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAGALANLAADDKCSMEVARAGGVHA 559
Query: 559 LVMLARSCKFEGVQEQXXXXXXXXXXHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
LVMLAR+CK+EG QEQ HGDSN NN+AVGQEAGALEALVQLT+SPHEGV+
Sbjct: 560 LVMLARNCKYEGAQEQAARALANLAAHGDSNGNNAAVGQEAGALEALVQLTQSPHEGVK 618
|
|
| RGD|621722 Fbxl20 "F-box and leucine-rich repeat protein 20" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 56/199 (28%), Positives = 91/199 (45%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E V LP + ++++ S L+ + R W L W +DL + D
Sbjct: 17 SNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRD 76
Query: 92 IA--MAASLASRCMN-LQKLRFRGAESA-DSIIHLQARNLRE---LSGDYCRKITDATLS 144
I + +++ RC L+KL RG D+ + A+N R LS + C K TDAT +
Sbjct: 77 IEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCT 136
Query: 145 VIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204
+ L L L C IT+ ++KA++ CP L++L +S + D I AL + C
Sbjct: 137 SLSKFCSKLRHLDLAS--CTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGC 194
Query: 205 PNLTDIGFLDCLNVDEVAL 223
L + C +++ AL
Sbjct: 195 GGLKALFLKGCTQLEDEAL 213
|
|
| MGI|MGI:2443416 Fbxl13 "F-box and leucine-rich repeat protein 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 30 IGSEKNEVV-DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAH 88
I E + D + LP+ ++Q+ L ++D + S R+W A+ LW+S+D
Sbjct: 229 IAVENRRIAFDISVLPEQAILQIFLYLTFKDMMACSRVNRSWMAMIQRGSLWNSIDFSTV 288
Query: 89 K--CDIAMAASLASRCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATL 143
K D + +L +N+ +L FRG + + +NL+EL+ C+ TD ++
Sbjct: 289 KNIADKCVVTTLQKWRLNVLRLNFRGCDFRTKTLKAVSHCKNLQELNVSDCQSFTDESM 347
|
|
| MGI|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 56/199 (28%), Positives = 91/199 (45%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E V LP + ++++ S L+ + R W L W +DL + D
Sbjct: 17 SNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRD 76
Query: 92 IA--MAASLASRCMN-LQKLRFRGAESA-DSIIHLQARNLRE---LSGDYCRKITDATLS 144
I + +++ RC L+KL RG D+ + A+N R LS + C K TDAT +
Sbjct: 77 IEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCT 136
Query: 145 VIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204
+ L L L C IT+ ++KA++ CP L++L +S + D I AL + C
Sbjct: 137 SLSKFCSKLRHLDLAS--CTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGC 194
Query: 205 PNLTDIGFLDCLNVDEVAL 223
L + C +++ AL
Sbjct: 195 GGLKALFLKGCTQLEDEAL 213
|
|
| UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 78/294 (26%), Positives = 129/294 (43%)
Query: 29 VIGSEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAH 88
++ S +E + LP + ++++ S L+ + + W L W +DL
Sbjct: 1 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNF 60
Query: 89 KCDIA--MAASLASRCMN-LQKLRFRGAESA-DSIIHLQA---RNLRELSGDYCRKITDA 141
+ D+ + +++ RC L+KL RG DS + A RN+ L+ + C KITD+
Sbjct: 61 QTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDS 120
Query: 142 TLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201
T + L+ L L C IT+ ++K I+ C L+ L LS I D + AL
Sbjct: 121 TCYSLSRFCSKLKHLDLTS--CVSITNSSLKGISEGCRHLEYLNLSWCDQITKDGVEALV 178
Query: 202 KLCPNLTDIGFLDCLNVDEVALGNVLS----VRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257
+ C L + C +++ AL ++ + + L++ S + V Q+ P+L
Sbjct: 179 RGCRGLRALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVVQLCRGCPRLQA 238
Query: 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE--EENNISAVKSKGKLLLA 309
L +S G +T SL L ALNCP L+ E S + G LLA
Sbjct: 239 LCLS--GCGSLT-------DASLTAL-ALNCPRLQILEAARCSHLTDAGFTLLA 282
|
|
| UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 55/199 (27%), Positives = 91/199 (45%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E V LP + ++++ S L+ + R W L W +DL + D
Sbjct: 17 SNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRD 76
Query: 92 IA--MAASLASRCMN-LQKLRFRGAESA-DSIIHLQARNLRE---LSGDYCRKITDATLS 144
I + +++ RC L+KL RG D+ + A+N R L+ + C K TDAT +
Sbjct: 77 IEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCT 136
Query: 145 VIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204
+ L L L C IT+ ++KA++ CP L++L +S + D I AL + C
Sbjct: 137 SLSKFCSKLRHLDLAS--CTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGC 194
Query: 205 PNLTDIGFLDCLNVDEVAL 223
L + C +++ AL
Sbjct: 195 GGLKALFLKGCTQLEDEAL 213
|
|
| UNIPROTKB|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 55/199 (27%), Positives = 91/199 (45%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E V LP + ++++ S L+ + R W L W +DL + D
Sbjct: 17 SNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRD 76
Query: 92 IA--MAASLASRCMN-LQKLRFRGAESA-DSIIHLQARNLRE---LSGDYCRKITDATLS 144
I + +++ RC L+KL RG D+ + A+N R L+ + C K TDAT +
Sbjct: 77 IEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCT 136
Query: 145 VIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204
+ L L L C IT+ ++KA++ CP L++L +S + D I AL + C
Sbjct: 137 SLSKFCSKLRHLDLAS--CTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGC 194
Query: 205 PNLTDIGFLDCLNVDEVAL 223
L + C +++ AL
Sbjct: 195 GGLKALFLKGCTQLEDEAL 213
|
|
| UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 66/274 (24%), Positives = 121/274 (44%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
S +E + LP + ++++ S L+ + + W L W +DL + D
Sbjct: 4 SNNDEALINKKLPKELLLRIFSFLDIVTLCRCAQVSKAWNVLALDGSNWQKIDLFNFQTD 63
Query: 92 IA--MAASLASRCMN-LQKLRFRGAESA-DSIIHLQA---RNLRELSGDYCRKITDATLS 144
I + +++ RC L++L RG DS + A RN+ L+ + C KITD+T
Sbjct: 64 IEGRVVENISKRCGGFLRQLSLRGCHVVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCY 123
Query: 145 VIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204
+ L+ L L C IT+ ++K ++ C L+ L LS I D I AL K C
Sbjct: 124 SLSRFCSKLKHLDLTS--CVAITNSSLKGLSEGCRNLEHLNLSWCDQITKDGIEALVKGC 181
Query: 205 PNLTDIGFLDCLNVDEVALGNVLS----VRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260
L + C +++ AL ++ + + L++ + + + ++ +L L V
Sbjct: 182 SGLKALFLRGCTQLEDEALKHIQNHCHELAILNLQSCTQISDEGIVKICRGCHRLQSLCV 241
Query: 261 SRT-DVGPITISRLLTSSKSLKVLCALNCPVLEE 293
S ++ +++ L + LK+L A C L +
Sbjct: 242 SGCCNLTDASLTALGLNCPRLKILEAARCSQLTD 275
|
|
| TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 64/270 (23%), Positives = 126/270 (46%)
Query: 97 SLASRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEA 152
++A C L+++ G + + I L+EL+ YC++I ++ L I ++
Sbjct: 340 AIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKS 399
Query: 153 LESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGF 212
LE L L D C I A+ +IA C LKKL + +I I ++ K C +LT++
Sbjct: 400 LEILHL-VD-CSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSL 457
Query: 213 LDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS-RTDVGPI 268
C V +A+G S++ L+V+G + + ++ + P+L LD+S ++G +
Sbjct: 458 RFCDKVGNKALIAIGKGCSLQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDM 517
Query: 269 TISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLL----LALFTDIFKALASLFAE 324
++ L LK L +C + + N ++ + K KLL + I A +
Sbjct: 518 PLAELGEGCPMLKDLVLSHCHHITD-NGLNHLVQKCKLLETCHMVYCPGITSAGVATVVS 576
Query: 325 TTKNEKNVFLD-WRNSKNKDKNLNEIMTWL 353
+ + K V ++ W+ ++ + ++++L
Sbjct: 577 SCPHIKKVLIEKWKVTERTTRRAGSVISYL 606
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22161 | ADLO1_ARATH | No assigned EC number | 0.7703 | 1.0 | 0.6634 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 617 | |||
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 5e-12 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-12 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 3e-09 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 6e-07 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 6e-06 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 6e-06 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 2e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-04 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 0.001 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.002 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 0.003 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.004 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-12
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARS 480
EAV++ GG+ L+ L S E +Q EAA A++NLS +AV E GG+ L L +S
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 481 MNRLVAEEAAGGLWNLSVGEEH-KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
+ V + A L NL+ G E K + +AGGV LV+L+ S + + + A GAL+N
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL---DSSNEDIQKNATGALSN 117
Query: 540 LAA 542
LA+
Sbjct: 118 LAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-12
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLA 563
A+ AGG+ ALV L+ SS + V AA AL+NL+A ++ V AGG+ ALV L
Sbjct: 2 AVIQAGGLPALVSLL---SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL 58
Query: 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+S E V + A AL NLAA +N + EAG + LV L S +E ++
Sbjct: 59 KSEDEE-VVKAALWALRNLAAG---PEDNKLIVLEAGGVPKLVNLLDSSNEDIQ 108
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-09
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLR 86
+ LPD+ ++Q+ S L+ RD L+ CR WR L + LW L LR
Sbjct: 1 LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCLR 47
|
This is an F-box-like family. Length = 47 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
L+SL+ S+ E+VQ AA L+ N++N +AV++ GG+ L+ L KS E
Sbjct: 12 LVSLLSSSDENVQREAAWALSNLSAGNNDNI-------QAVVEAGGLPALVQLLKSEDEE 64
Query: 444 LQSEAAKAIANLS-VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497
+ A A+ NL+ V E GG+ L L S N + + A G L NL+
Sbjct: 65 VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 81 SSLDLRAHKCDIAMAA-SLASRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYC 135
L+L C I+ S C L+KL G++ D + NL+ L C
Sbjct: 31 EWLELYM--CPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRAC 88
Query: 136 RKITDATLSVIVARH-EALESLQLGPDF-CERITSDAVKAIALCCPKLKKLRLSGIRDIC 193
ITD+ + V +A + L+++ LG IT ++ A+ C L+ + +G D+
Sbjct: 89 ENITDSGI-VALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVT 146
Query: 194 GDAINALAKLC-PNLTDIGFLDCLNVDEVALGNVL 227
+ LA C +L + +C N+ + ++ +L
Sbjct: 147 DKGVWELASGCSKSLERLSLNNCRNLTDQSIPAIL 181
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 43 LPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80
LPD+ + +++S L+ +D L R WR+L S W
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFW 38
|
Length = 41 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-05
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80
LPDD +++++S L+ +D LS + WR+L S LW
Sbjct: 3 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLW 43
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 73/242 (30%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 384 LLSLMQSTQEDVQERAATGLA-TFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L+ L+ S++E+ QE+AA+ LA F D S+ D I + L + E
Sbjct: 614 LIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT--------DEIINPCIKLLTNNTE 665
Query: 443 GLQSEAAKAIANLSVNAKVAKAVA--EEGGINILAVLARSMNRLVAEEAAGGLWNL-SVG 499
+ +++A+A+A LS + K + V+ E I L LA+S + VAE+A L NL S
Sbjct: 666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA----DDKCSMEVALAGG 555
E A+A+ + L ++ + + G AA ALA L DD V G
Sbjct: 726 EVAAEALAE-DIILPLTRVLREGTLEGK---RNAARALAQLLKHFPVDDVLKDSVQCRGT 781
Query: 556 VHALVMLARSCKFEGVQE-QAARALANLA-AHGDSNSNNSAVGQEAGALEALVQLTRSPH 613
V ALV L S + +A ALA LA G +N ++ A +L L R
Sbjct: 782 VLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLA 841
Query: 614 EG 615
EG
Sbjct: 842 EG 843
|
Length = 2102 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 22/171 (12%)
Query: 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL--SVNAKVAKAVAEEGGINILAVLARS 480
A ++ GG+ +L+ L S Q+ AA +A L + + ++K + +L +L +
Sbjct: 184 ATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQG 243
Query: 481 MNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSG------GDGVLERA 533
V EAAG L LS +E K AIADAGG+ AL++ S + E A
Sbjct: 244 NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENA 303
Query: 534 AGALANLAADDKCSMEVALAGGVHALVM-LARSCKFEGVQEQAARALANLA 583
GALAN + GG+ AL++ L + A L LA
Sbjct: 304 MGALAN------------ICGGMSALILYLGELSESPRSPAPIADTLGALA 342
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542
E+K A+ +AG V LV L+ SS + V E AA AL+NLAA
Sbjct: 2 PENKQAVIEAGAVPPLVQLL---SSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 3/181 (1%)
Query: 429 GIRLLLDLAKSWREGLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVLARSMNRLVAE 487
+R L+ L S +E Q +AA +A++ S + +++A + IN L + VA
Sbjct: 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVAT 669
Query: 488 EAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547
++A L LS + ++ A A+ LI S V E+A ALANL +D + +
Sbjct: 670 QSARALAALSRSIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728
Query: 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607
E + L + R EG + AARALA L H + Q G + ALV
Sbjct: 729 AEALAEDIILPLTRVLREGTLEG-KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVD 787
Query: 608 L 608
L
Sbjct: 788 L 788
|
Length = 2102 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 138 ITDATLS-VIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDA 196
IT + +S ++ H LE L+L C D C KLKKL L G + I +
Sbjct: 14 ITQSNISQLLRILHSGLEWLEL--YMCPIS--DPPLDQLSNCNKLKKLILPGSKLIDDEG 69
Query: 197 INALAKLCPNLTDIGFLDCLNV 218
+ ALA+ CPNL + C N+
Sbjct: 70 LIALAQSCPNLQVLDLRACENI 91
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 373 DDFWLKQ----GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG 428
D FW G +L+ L+ S D Q AA+ LA + V+ G
Sbjct: 179 DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM-------MAFESSISKVLDAG 231
Query: 429 GIRLLLDLAKSWRE-GLQSEAAKAIANLSVNAKVAK-AVAEEGGINIL--AVLARSMN-- 482
++ LL L E +++EAA A+ LS +K AK A+A+ GGI L A +A S
Sbjct: 232 AVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFM 291
Query: 483 -----RLVAEEAAGGLWNLSVG 499
+ + E A G L N+ G
Sbjct: 292 QGEFAQALQENAMGALANICGG 313
|
Length = 2102 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 617 | |||
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.94 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.9 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.88 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.85 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.85 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.85 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.85 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.82 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.82 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.75 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.73 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.71 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.65 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.62 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.58 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.54 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 99.54 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.49 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.35 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.34 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.34 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.32 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 99.31 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.31 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.29 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.25 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.18 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.16 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.15 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.08 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 99.05 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 99.05 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.04 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.02 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.01 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.97 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.96 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.94 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 98.88 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.84 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 98.83 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.8 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.73 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.72 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.71 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.66 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.6 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.55 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.55 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.53 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.41 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.41 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.33 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.32 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.32 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 98.3 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.28 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.27 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.25 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 98.23 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.21 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.21 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.2 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.19 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.15 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.13 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.1 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.1 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.05 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.02 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.98 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.94 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.91 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.89 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.88 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.8 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.77 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.72 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.68 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.65 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.65 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.6 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.6 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.58 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.57 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.55 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.53 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 97.48 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.43 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 97.4 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 97.37 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 97.26 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.25 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 97.24 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 97.22 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.18 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.18 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.18 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.07 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.01 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 97.01 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 97.0 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.99 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.99 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.97 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.96 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 96.92 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 96.89 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.87 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.87 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.85 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.78 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.76 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.76 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 96.75 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.62 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 96.55 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.45 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.42 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.35 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.32 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.31 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.29 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 96.25 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.21 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.19 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 96.17 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.11 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.1 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.09 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.07 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.04 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.01 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.01 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 95.93 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 95.92 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 95.88 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.83 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 95.79 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.77 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 95.75 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.65 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.6 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.54 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.48 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.48 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.47 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 95.45 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.42 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 95.42 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 95.4 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.39 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.31 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.23 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 95.13 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.02 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 94.96 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 94.92 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.87 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.78 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 94.77 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.74 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.66 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 94.6 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.57 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.56 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 94.5 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.49 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.47 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.43 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.4 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 94.38 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.36 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 94.36 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.33 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 94.32 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 94.2 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 94.04 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 94.04 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 94.02 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 93.97 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 93.95 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.86 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.81 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 93.78 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 93.73 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 93.67 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.63 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 93.6 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 93.56 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 93.53 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 93.38 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 93.29 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 93.24 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 93.21 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.15 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 93.09 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 93.08 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 93.07 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 92.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 92.76 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.47 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 92.16 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 92.04 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 91.89 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 91.88 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 91.86 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 91.62 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 91.43 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 91.2 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 91.15 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 91.0 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.76 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 90.3 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 90.28 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 90.16 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 89.73 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 89.72 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 88.78 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 88.61 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 88.39 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 88.24 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 88.03 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 87.54 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 87.5 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 87.19 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 86.9 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 86.88 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 86.85 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 86.47 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 86.34 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 86.1 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 85.86 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 85.4 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 85.28 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 85.23 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 85.15 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 84.99 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 84.96 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 84.38 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 84.09 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 83.26 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 83.13 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 82.99 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 82.78 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 82.75 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 82.4 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 81.88 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 81.18 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 81.06 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 80.66 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 80.44 |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=209.64 Aligned_cols=243 Identities=26% Similarity=0.458 Sum_probs=172.5
Q ss_pred CCCCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHH---------------------
Q 007131 35 NEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIA--------------------- 93 (617)
Q Consensus 35 ~~~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~--------------------- 93 (617)
.+...|..||||++..||+.|+.+++++++.|||+|++++.+.++|+++|+....+.+.
T Consensus 93 npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~ 172 (419)
T KOG2120|consen 93 NPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMD 172 (419)
T ss_pred CCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhc
Confidence 34456999999999999999999999999999999999999999998888765433332
Q ss_pred ----------------------------HHHHHHHhCCCceEEEecCCCCccHHHHh--cCCCccEEeccCCCCCCHHHH
Q 007131 94 ----------------------------MAASLASRCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATL 143 (617)
Q Consensus 94 ----------------------------~~~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l 143 (617)
.+..+...|..|+.|.+.|....+.+..- ...+|+.|+++.|++++..++
T Consensus 173 ~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 173 QPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred CchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH
Confidence 33344555566666666666666554432 667788888888887888888
Q ss_pred HHHHhcCCCcceEEEcCCCCCCCCHHHHHH-HHhcCCCCCeeeccCccC-CcHHHHHHHHhcCCCCceEeecCCCCCCHH
Q 007131 144 SVIVARHEALESLQLGPDFCERITSDAVKA-IALCCPKLKKLRLSGIRD-ICGDAINALAKLCPNLTDIGFLDCLNVDEV 221 (617)
Q Consensus 144 ~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~-l~~~~~~L~~L~l~~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 221 (617)
..+..+|..|..|+|+ ||.-.++. +.. ++.--++|+.|+|+||.. +.++.+..+.+.||+|.+||+++|..+++.
T Consensus 253 ~ll~~scs~L~~LNls--Wc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLS--WCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHHHHhhhhHhhcCch--Hhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 8888888888888884 67655555 333 334446788888887753 455567777777888888888887777775
Q ss_pred HH---hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 222 AL---GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 222 ~l---~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+ ..++-|++|+++.|..+....+.++ ...|.|.+|++.++ +++.++..+...+++|+.
T Consensus 330 ~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~-vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 330 CFQEFFKFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC-VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HHHHHHhcchheeeehhhhcCCChHHeeee-ccCcceEEEEeccc-cCchHHHHHHHhCccccc
Confidence 43 5677788888888877776665554 34677888887775 334444445555666643
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-27 Score=221.17 Aligned_cols=266 Identities=24% Similarity=0.343 Sum_probs=232.7
Q ss_pred CCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCC--CCCHHHHHHHHHhCC-CceEEEecCCC
Q 007131 38 VDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAH--KCDIAMAASLASRCM-NLQKLRFRGAE 114 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~--~~~~~~~~~l~~~~~-~L~~L~l~~~~ 114 (617)
..--.||+|++..||++|+.+.+.+++++|+.|...+.+...|+++|+..+ .++..++..+.++|. .|+.|.++||.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r 149 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR 149 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc
Confidence 345569999999999999999999999999999999999999999999874 456678888888887 59999999996
Q ss_pred Ccc----HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCcc
Q 007131 115 SAD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIR 190 (617)
Q Consensus 115 ~~~----~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 190 (617)
... ......|+++++|.+.+|..+||..+..+.++|++|++|++. .|..+++..++.++..|++|++|+++-|.
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~--~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH--SCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc--ccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 542 233448999999999999999999999999999999999996 48999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc-CCC
Q 007131 191 DICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR-TDV 265 (617)
Q Consensus 191 ~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~-~~~ 265 (617)
.++..+++.+.+.|..++.+...||...+++.+ .++..+.++++..|..++|.++..+..+|..|+.|+.++ +++
T Consensus 228 qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 228 QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI 307 (483)
T ss_pred hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC
Confidence 999999999999999999998889988888776 456778888888998899999988888999999999988 568
Q ss_pred CHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHHhhcCc
Q 007131 266 GPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGK 305 (617)
Q Consensus 266 ~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~ 305 (617)
++..+..+..++++|+++.++.|...++.++.++...+.+
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 8899999999999999999999999999888877655433
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-23 Score=190.33 Aligned_cols=227 Identities=28% Similarity=0.307 Sum_probs=205.3
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
++..|. ..+.++-++++..+|.++..+|.|++... ++ |+.++.+|++|.||.+++++++++|..++.++.+
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-En-------Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisn 234 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-EN-------RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISN 234 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hh-------hhhhhccCCchhhhhhhccCChhHHHHHHHHhhh
Confidence 355555 78888778999999999999999996543 33 3789999999999999999999999999999999
Q ss_pred hccchhhHHHHHHhC--CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVNAKVAKAVAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
++.+..+|..+++.+ .|+.|+.++.++++.++-.|..+|.||+.+.+++..+++.|++|.++++++ ++.-+...+
T Consensus 235 IaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llq---s~~~plila 311 (550)
T KOG4224|consen 235 IAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQ---SPMGPLILA 311 (550)
T ss_pred hhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHh---CcchhHHHH
Confidence 999999999999988 699999999999999999999999999999999999999999999999995 467788889
Q ss_pred HHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
...|+.|++.++-+...|+++|++.+|+++|+-+++++++-+|..+|+||+..++. +..++.+.|++|++++++.+.
T Consensus 312 sVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~---n~~~i~esgAi~kl~eL~lD~ 388 (550)
T KOG4224|consen 312 SVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH---NVSVIRESGAIPKLIELLLDG 388 (550)
T ss_pred HHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh---hhHHHhhcCchHHHHHHHhcC
Confidence 99999999999999999999999999999999988889999999999999985444 677888999999999998876
Q ss_pred CCCC
Q 007131 613 HEGV 616 (617)
Q Consensus 613 ~~~v 616 (617)
.-.|
T Consensus 389 pvsv 392 (550)
T KOG4224|consen 389 PVSV 392 (550)
T ss_pred ChhH
Confidence 6554
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=181.35 Aligned_cols=227 Identities=24% Similarity=0.297 Sum_probs=204.4
Q ss_pred HHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC--CHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG--GIRLLLDLAKSWREGLQSEAAKAIA 453 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~Lv~lL~~~~~~~~~~a~~~L~ 453 (617)
+...++|.|++++++.+.++|..++.++.+++.. ..+|+.+++.+ .++.|+.+..+++++++-.|.-+|+
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd--------~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD--------RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALR 276 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhh--------HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHh
Confidence 3445569999999999999999999999998643 34456788777 9999999999999999999999999
Q ss_pred HhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 454 NLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 454 ~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
|++.+.+....|++.|++|.++++|+++.-....+.+.++.|++..+-|-.-|++.|.+.+|+.+|. ..++++++..|
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~--~~dnEeiqchA 354 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLR--AGDNEEIQCHA 354 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHh--cCCchhhhhhH
Confidence 9999999999999999999999999888777777888899999999999999999999999999997 46778899999
Q ss_pred HHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
..+||||+. ...++..|.+.|+++.+.+++.+++ -.+++...+++..|+. +...+..+.+.|.++.|+.+..+.
T Consensus 355 vstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-vsvqseisac~a~Lal----~d~~k~~lld~gi~~iLIp~t~s~ 429 (550)
T KOG4224|consen 355 VSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-VSVQSEISACIAQLAL----NDNDKEALLDSGIIPILIPWTGSE 429 (550)
T ss_pred HHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHHHHHHHHHHHHh----ccccHHHHhhcCCcceeecccCcc
Confidence 999999996 6778999999999999999999886 8999999999999998 333678888999999999999999
Q ss_pred CCCCC
Q 007131 613 HEGVR 617 (617)
Q Consensus 613 ~~~vr 617 (617)
+++||
T Consensus 430 s~Ev~ 434 (550)
T KOG4224|consen 430 SEEVR 434 (550)
T ss_pred chhhc
Confidence 98886
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-20 Score=208.22 Aligned_cols=222 Identities=30% Similarity=0.310 Sum_probs=190.6
Q ss_pred cCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 379 QGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 379 ~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
.|+ |.|+.+|.+++..+|.+|+.+|.+|+.. +++ +..+...|++++|+++|++++++.++.|+++|.+|+.
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~-e~n-------k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~ 128 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE-EDL-------RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSS 128 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHH-------HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHc
Confidence 555 9999999999999999999999999654 333 3678899999999999999999999999999999999
Q ss_pred c---hhhHH-HHHHhCCHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCcchH-HHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 458 N---AKVAK-AVAEEGGINILAVLARSMN---RLVAEEAAGGLWNLSVGEEHK-GAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 458 ~---~~~~~-~i~~~~~i~~L~~lL~~~~---~~~~~~a~~~L~nL~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
+ ++++. .++..|+||.|+++|++.+ ..+++.|+.+|.||+..++++ ..+++.|++|.++.+|. ++++.+
T Consensus 129 ~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs---S~d~~l 205 (2102)
T PLN03200 129 GGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS---SGNSDA 205 (2102)
T ss_pred CcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc---CCCHHH
Confidence 6 44453 4567999999999999863 346788899999999988877 45689999999999995 578899
Q ss_pred HHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHH
Q 007131 530 LERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL 608 (617)
Q Consensus 530 ~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~l 608 (617)
+.+|+++|.+++.. ++.+..+++.|+++.|+++++++++..++++|+++|.|||.+++. ....+++.|+++.|+++
T Consensus 206 Q~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e---~r~~Iv~aGgIp~LI~l 282 (2102)
T PLN03200 206 QANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE---AKQAIADAGGIPALINA 282 (2102)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH---HHHHHHHCCCHHHHHHH
Confidence 99999999999865 568999999999999999998766579999999999999985433 67788899999999999
Q ss_pred hcCCCC
Q 007131 609 TRSPHE 614 (617)
Q Consensus 609 l~~~~~ 614 (617)
+.++++
T Consensus 283 L~sp~~ 288 (2102)
T PLN03200 283 TVAPSK 288 (2102)
T ss_pred HhCcch
Confidence 987654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=186.50 Aligned_cols=232 Identities=22% Similarity=0.273 Sum_probs=192.3
Q ss_pred ccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHH
Q 007131 370 QGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSE 447 (617)
Q Consensus 370 ~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~ 447 (617)
++....+.. |+ +.+|+.|. ..++.+|..|+|+|.|+|+...+.- +.++++|++|.+++++.+++.++++.
T Consensus 100 ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-------~~vv~agavp~fi~Ll~s~~~~v~eQ 171 (514)
T KOG0166|consen 100 PPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-------KVVVDAGAVPIFIQLLSSPSADVREQ 171 (514)
T ss_pred CCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-------cccccCCchHHHHHHhcCCcHHHHHH
Confidence 445554444 66 99999996 5669999999999999998876653 57899999999999999999999999
Q ss_pred HHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHh-------------------------------------------cCCH
Q 007131 448 AAKAIANLSVN-AKVAKAVAEEGGINILAVLAR-------------------------------------------SMNR 483 (617)
Q Consensus 448 a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~-------------------------------------------~~~~ 483 (617)
|+|+|+|++.+ +..|..+.+.|++++|+.++. +.++
T Consensus 172 avWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 172 AVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred HHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 99999999995 557888888888887776665 4556
Q ss_pred HHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHH
Q 007131 484 LVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVM 561 (617)
Q Consensus 484 ~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ 561 (617)
++...|+|||..|+.++ +.-+.+++.|+++.|+++|. ..+..++..|+.++.|++.+.+. ...++..|+++.|..
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~---~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ 328 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG---HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSN 328 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc---CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHH
Confidence 67778888888888544 66777788999999999995 46668889999999999876555 677789999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCC
Q 007131 562 LARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 562 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
++...+.+.++..|||++.|+++. +......++++|.+|.|+++++...-+
T Consensus 329 ll~~s~~~~ikkEAcW~iSNItAG---~~~qiqaVida~l~p~Li~~l~~~ef~ 379 (514)
T KOG0166|consen 329 LLSSSPKESIKKEACWTISNITAG---NQEQIQAVIDANLIPVLINLLQTAEFD 379 (514)
T ss_pred HhccCcchhHHHHHHHHHHHhhcC---CHHHHHHHHHcccHHHHHHHHhccchH
Confidence 998655577999999999999983 333677788999999999999886544
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=210.51 Aligned_cols=234 Identities=25% Similarity=0.261 Sum_probs=193.1
Q ss_pred ccchHHHHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHH
Q 007131 370 QGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (617)
Q Consensus 370 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~ 449 (617)
.....+....+++.|+++|.+++++.|..|+++|.+++...+++ +..+.+.|++|.|+++|.++++++++.|+
T Consensus 437 e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nden-------r~aIieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 437 GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDES-------KWAITAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 33334334446699999999999999999999999998765554 36889999999999999999999999999
Q ss_pred HHHHHhccchhhHHH-HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch--------------------------
Q 007131 450 KAIANLSVNAKVAKA-VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH-------------------------- 502 (617)
Q Consensus 450 ~~L~~ls~~~~~~~~-i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~-------------------------- 502 (617)
++|.|++.++++... +.+.|++++|+++|++.++++++.|+++|.||+...+.
T Consensus 510 wAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLg 589 (2102)
T PLN03200 510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLG 589 (2102)
T ss_pred HHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 999999997765544 55789999999999999999999999999999643211
Q ss_pred -----------HHH-HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCch
Q 007131 503 -----------KGA-IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFE 569 (617)
Q Consensus 503 -----------~~~-i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~ 569 (617)
+.. ....|+++.|++++. ++++..++.|+++|+|++... +....++..|++++++.++.+++ .
T Consensus 590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~---sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~-~ 665 (2102)
T PLN03200 590 HVLSVASLEDLVREGSAANDALRTLIQLLS---SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT-E 665 (2102)
T ss_pred HHHhhcchhHHHHHhhhccccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-h
Confidence 111 123689999999995 578899999999999999654 45788999999999999999886 8
Q ss_pred hHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 570 GVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+++..|+++|.+++.... ..+...+++.|++++|++++.+++.++
T Consensus 666 ~v~keAA~AL~nL~~~~~--~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 666 AVATQSARALAALSRSIK--ENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHHHHHHHHHHhCCC--HHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 999999999999997432 234455578999999999999887654
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=182.19 Aligned_cols=224 Identities=24% Similarity=0.265 Sum_probs=189.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-ch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~-~~ 459 (617)
+.++.++.+++++.+..+...++.|.+.... ..+ ..++..|.++.+|+.|... ++.++..|+|+|.|+|. +.
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi-----~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgts 142 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERN-PPI-----DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTS 142 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-CCH-----HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCch
Confidence 7788888899999999999999998665544 444 5677779999999999755 69999999999999999 55
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+....+++.|++|.++.++.++++.+++.|+|||+|++.++ ..|..++..|++++|+.++.. +....+.++++|+|.
T Consensus 143 e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~--~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 143 EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK--SDKLSMLRNATWTLS 220 (514)
T ss_pred hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc--ccchHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999765 788888899999999999974 223479999999999
Q ss_pred HhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 539 NLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 539 ~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
|||.+... ...-.-...++.|..++++.+ +.+...|+|+|.+|+..+.. ...++++.|+++.|+++|.+....|+
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg~ne---~iq~vi~~gvv~~LV~lL~~~~~~v~ 296 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLTDGSNE---KIQMVIDAGVVPRLVDLLGHSSPKVV 296 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChH---HHHHHHHccchHHHHHHHcCCCcccc
Confidence 99987643 332233468899999999986 89999999999999875544 56778899999999999999876553
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=166.81 Aligned_cols=237 Identities=23% Similarity=0.260 Sum_probs=195.4
Q ss_pred hhccCCccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC
Q 007131 364 TAESNPQGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR 441 (617)
Q Consensus 364 l~~~~~~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 441 (617)
++....++.+.. ..+|+ |.++++|. ....-.+..|+|+|.|+++.....- +.+++.|++|.++.+|.+++
T Consensus 99 LS~E~~PPIq~V-IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-------kvVvd~~AVPlfiqlL~s~~ 170 (526)
T COG5064 99 LSKETSPPIQPV-IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-------KVVVDAGAVPLFIQLLSSTE 170 (526)
T ss_pred hccccCCCchhH-HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-------EEEEeCCchHHHHHHHcCch
Confidence 444455555553 46666 99999995 4555678999999999987765443 35789999999999999999
Q ss_pred HHHHHHHHHHHHHhccchh-hHHHHHHhCCHHHHHHHHhcCCH--HHHHHHHHHHHHhcCCcc---hHHHHHhcCChHHH
Q 007131 442 EGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNR--LVAEEAAGGLWNLSVGEE---HKGAIADAGGVKAL 515 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~~~~--~~~~~a~~~L~nL~~~~~---~~~~i~~~g~i~~L 515 (617)
.++++.|+|+|.|++.+.+ .|+.+.+.|++++++.++.+.-. .+...+.|+|.||+.... .-..+. .++|.|
T Consensus 171 ~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL 248 (526)
T COG5064 171 DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPIL 248 (526)
T ss_pred HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHH
Confidence 9999999999999999655 68888999999999999987544 788999999999997652 223333 478999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccc
Q 007131 516 VDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (617)
Q Consensus 516 ~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (617)
.+++ .+.++++...|+|++..|+..+. ....+++.|..+.|+++|.+++ ..++.-|...+.|+...++. ...
T Consensus 249 ~KLi---ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-a~iqtPalR~vGNIVTG~D~---QTq 321 (526)
T COG5064 249 AKLI---YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTPALRSVGNIVTGSDD---QTQ 321 (526)
T ss_pred HHHH---hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCHHHHhhcCeeecCcc---cee
Confidence 9999 56889999999999999997654 4567789999999999999875 79999999999999885444 677
Q ss_pred cccccCcHHHHHHHhcCCCCCCC
Q 007131 595 VGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 595 ~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
++++.|+++.+..+|.++.+.+|
T Consensus 322 viI~~G~L~a~~~lLs~~ke~ir 344 (526)
T COG5064 322 VIINCGALKAFRSLLSSPKENIR 344 (526)
T ss_pred hheecccHHHHHHHhcChhhhhh
Confidence 88899999999999999988776
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=162.25 Aligned_cols=223 Identities=20% Similarity=0.224 Sum_probs=184.8
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~ 459 (617)
+|.+.+-|-+++.+.|..|..-.+.+.+. +.+..+ +.++++|.+|.+++++.+. ..-.+..|+|+|.|+++..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~-E~~PPI-----q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSK-ETSPPI-----QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccCCCc-----hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 37788888888889999999988887544 444445 6899999999999999655 4557889999999999966
Q ss_pred hhH-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 KVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 ~~~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
... ..+++.|++|.++++|.+.+.+|++.|+|||.|+|.++ ..|..+.+.|++++++.++.. ...+-.+.+++.|+|
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s-s~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh-ccchHHHHHHhHHHH
Confidence 554 45568999999999999999999999999999999877 567778889999999999975 444568999999999
Q ss_pred HHhccCC---CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 538 ANLAADD---KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 538 ~~l~~~~---~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
.|||... +....|.+ .+|.|.+++.+.+ +++...|+|++.+|+-.+.. ....+.+.|..+.|+++|.+++.
T Consensus 226 SNlcRGknP~P~w~~isq--alpiL~KLiys~D-~evlvDA~WAiSYlsDg~~E---~i~avld~g~~~RLvElLs~~sa 299 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQ--ALPILAKLIYSRD-PEVLVDACWAISYLSDGPNE---KIQAVLDVGIPGRLVELLSHESA 299 (526)
T ss_pred HHhhCCCCCCCchHHHHH--HHHHHHHHHhhcC-HHHHHHHHHHHHHhccCcHH---HHHHHHhcCCcHHHHHHhcCccc
Confidence 9999753 33445544 7899999999886 89999999999999764333 45677799999999999999876
Q ss_pred CC
Q 007131 615 GV 616 (617)
Q Consensus 615 ~v 616 (617)
.|
T Consensus 300 ~i 301 (526)
T COG5064 300 KI 301 (526)
T ss_pred cc
Confidence 65
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-16 Score=144.79 Aligned_cols=236 Identities=17% Similarity=0.274 Sum_probs=199.2
Q ss_pred HHhcCh-HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccC--CchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLM-QSTQEDVQERAATGLATFVVINDENASI--DCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAK 450 (617)
Q Consensus 376 ~~~~~i-~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~ 450 (617)
+.+.++ +.+...+ +.+..++.+.++++++.|...+|-.+.+ -..+.+.|+..|++..|++.++-. +|++...++.
T Consensus 185 ~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~ 264 (461)
T KOG4199|consen 185 FMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLST 264 (461)
T ss_pred HHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHH
Confidence 467777 7777555 4444578899999999998887766666 255667888999999999999886 8999999999
Q ss_pred HHHHhccchhhHHHHHHhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCC
Q 007131 451 AIANLSVNAKVAKAVAEEGGINILAVLARSMNR----LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (617)
Q Consensus 451 ~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 526 (617)
+|..|+..++.+..|.+.||++.|++++.+.+. +..+.++..|..|+.++.++..|++.||.+.++.++.. ++++
T Consensus 265 tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~-h~~~ 343 (461)
T KOG4199|consen 265 TLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR-HSDD 343 (461)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH-cCCC
Confidence 999999999999999999999999999988443 35567899999999999999999999999999999987 8999
Q ss_pred HHHHHHHHHHHHHhc-cCCCchHHHHHhCCHHHHHHHHhc-CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHH
Q 007131 527 DGVLERAAGALANLA-ADDKCSMEVALAGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~ 604 (617)
+.+..+++.++.-|| ..+++...+++.|+....++.++- +....++.+||++++|+...+.. +...+.. .|++.
T Consensus 344 p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~---~~~~~l~-~GiE~ 419 (461)
T KOG4199|consen 344 PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE---NRTILLA-NGIEK 419 (461)
T ss_pred hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh---ccchHHh-ccHHH
Confidence 999999999999999 567778888999999999998864 44468999999999999986655 4556554 55999
Q ss_pred HHHHhcCCCCCC
Q 007131 605 LVQLTRSPHEGV 616 (617)
Q Consensus 605 L~~ll~~~~~~v 616 (617)
|++.....++.+
T Consensus 420 Li~~A~~~h~tc 431 (461)
T KOG4199|consen 420 LIRTAKANHETC 431 (461)
T ss_pred HHHHHHhcCccH
Confidence 999888877764
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=163.91 Aligned_cols=235 Identities=20% Similarity=0.281 Sum_probs=151.2
Q ss_pred cCChHhHHHHhhhchhHHHhhcCC-CcccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH----HHHhcC----
Q 007131 54 CLNYRDRASLSSTCRTWRALGASP-CLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS----IIHLQA---- 124 (617)
Q Consensus 54 ~L~~~~~~~~~~vck~w~~~~~~~-~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~---- 124 (617)
++........+++|+.|+.+...+ ..| ++..++.+.+.|++|++|+++.|..... .....+
T Consensus 176 ~iTd~s~~sla~~C~~l~~l~L~~c~~i----------T~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~ 245 (483)
T KOG4341|consen 176 KITDSSLLSLARYCRKLRHLNLHSCSSI----------TDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELE 245 (483)
T ss_pred eccHHHHHHHHHhcchhhhhhhcccchh----------HHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhh
Confidence 677777789999999999988776 334 5667778888899999999887743221 112223
Q ss_pred ----------------------CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 125 ----------------------RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 125 ----------------------~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
.-+.++++..|..++|.+++.+..+|..|+.|+.+ .|..+++..+..+.++|++|+
T Consensus 246 ~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 246 KLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS--SCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred hhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc--CCCCCchHHHHHHhcCCCceE
Confidence 33445555566556666666666666666666664 366666666666666666666
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHh---cCCCC
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWH---KLPKL 255 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L 255 (617)
.|.+++|.++++.++..+..+|+.|+.+++.+|..++|..+ .+|+.|+.|.++.|..++|+++..+.. +...|
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 66666666666666666666666666666666655555443 355666666666666666666555442 33456
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHHHHH
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAV 300 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 300 (617)
+.+.++.+....+..-+.+..|++|+.+++.+|..++...+.++.
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 666666655544444555556666666666666666666655554
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=168.34 Aligned_cols=201 Identities=24% Similarity=0.203 Sum_probs=177.7
Q ss_pred CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCH
Q 007131 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI 471 (617)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i 471 (617)
++++...+...|.|||.+... ...+.+.|.++.|+++|++++.++...++.+|.+||...+++..+.+.|.|
T Consensus 262 QeqLlrv~~~lLlNLAed~~v--------e~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRV--------ELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHH--------HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 456667888899999755433 267889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 007131 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA 551 (617)
Q Consensus 472 ~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~ 551 (617)
+.|++++.+++.+++..|+.+|.|||++++.|..|++.|++|.|+.+|. ++..+..++.+|+++|.++++|..+.
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~-----d~~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK-----DPNFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC-----CCchHHHHHHHHHHhccCHhhHHHHh
Confidence 9999999999999999999999999999999999999999999999994 23456779999999999999999999
Q ss_pred HhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHh
Q 007131 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT 609 (617)
Q Consensus 552 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll 609 (617)
..++++.+++++.+++.+++...+.+++.|||.+. .+++.+.+.|+++.|++..
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~----rnaqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNK----RNAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH----HHHHHHHhcCcHHHHHHHH
Confidence 99999999998766555788888999999999833 3567777888999998854
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-17 Score=172.43 Aligned_cols=214 Identities=22% Similarity=0.252 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch--hhHHHHHHhCC
Q 007131 393 EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA--KVAKAVAEEGG 470 (617)
Q Consensus 393 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~~~ 470 (617)
-.++..|.++|.||+..+..|+. ..+...|+++++|..|.+..+++....+.+|+||++.. ..+..+.+.|-
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa------~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~Gs 438 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKA------TLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGS 438 (2195)
T ss_pred HHHHHHHHHHhhccccccccchh------hhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhh
Confidence 46799999999999988887752 35668899999999999998899999999999999944 46888889999
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHhcCCc-chHHHHHh-cCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhcc----
Q 007131 471 INILAVL-ARSMNRLVAEEAAGGLWNLSVGE-EHKGAIAD-AGGVKALVDLIFK-WSSGGDGVLERAAGALANLAA---- 542 (617)
Q Consensus 471 i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~-~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~---- 542 (617)
|..|+.+ |....+..+...+.|||||+.+. +|+..|+. .|++..||.+|.. +.+....+++.|.++|.|++.
T Consensus 439 VtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt 518 (2195)
T KOG2122|consen 439 VTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT 518 (2195)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc
Confidence 9999988 66677788999999999998654 99999998 8999999999976 345567899999999999975
Q ss_pred CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 543 DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 543 ~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.++.|..+.+.+.+..|+..|++.. -.+..++|++||||+..... ..+++++.|+|+.|..++++++.++
T Consensus 519 ~E~yRQILR~~NCLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~---DQq~LwD~gAv~mLrnLIhSKhkMI 588 (2195)
T KOG2122|consen 519 CEDYRQILRRHNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPE---DQQMLWDDGAVPMLRNLIHSKHKMI 588 (2195)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHH---HHHHHHhcccHHHHHHHHhhhhhhh
Confidence 4556888889999999999999874 79999999999999985443 6788999999999999999998765
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=153.16 Aligned_cols=235 Identities=24% Similarity=0.255 Sum_probs=187.3
Q ss_pred HHHhhccCCccchHHHHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc
Q 007131 361 LLRTAESNPQGLDDFWLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (617)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~ 439 (617)
+..+++........ ...|+ +.|+++|.+++.++...++..|.+|+...+ |+ ..|.+.|+++.|++++.+
T Consensus 273 LlNLAed~~ve~kM--~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK-------~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 273 LLNLAEDPRVELKM--VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NK-------DEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHhcChHHHHHH--HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HH-------HHHHHcCCHHHHHHHhcC
Confidence 34445544444433 45555 999999999999999999999999965543 33 689999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI 519 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll 519 (617)
++.+++..++++|.|||.+++.|..+++.|.+|.|+.+|.++ ..+..+..+|++||.+++.|..+...+++|.+++++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999754 456779999999999999999999999999999998
Q ss_pred hhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHH------------------------------------
Q 007131 520 FKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA------------------------------------ 563 (617)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll------------------------------------ 563 (617)
.. .+.+.+...+++++.|||.+..+.+.|.+.|+++.|++..
T Consensus 421 l~--~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~ 498 (708)
T PF05804_consen 421 LE--NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKI 498 (708)
T ss_pred Hh--CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 64 3455666778888888888888877777767766655422
Q ss_pred -hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 564 -RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 564 -~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
..+++++..-.+.++|.||+..+. .....+.+.+.+|.|..++..+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~l---d~~~ll~~~~llp~L~~~L~~g 545 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDL---DWAQLLQEYNLLPWLKDLLKPG 545 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCc---CHHHHHHhCCHHHHHHHHhCCC
Confidence 222346777788899999986322 2445555789999999998754
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=133.36 Aligned_cols=227 Identities=20% Similarity=0.185 Sum_probs=183.7
Q ss_pred HHhcChHHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 376 WLKQGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 376 ~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
|..+.++.++.+|+ +.++.+++.|+.++.+.+..+ ..+..+.+.|+++.+..+|.++++.+++.|+.+|.|
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--------~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP--------FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN 80 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--------hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 43444588999997 478999999999999986543 334678899999999999999999999999999999
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
+|.+.+++..|.. .++.+++...+. +.+++..++.+|.||+..++++..+.. .++.++.+|. +++..++..
T Consensus 81 ls~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~---~G~~~~k~~ 153 (254)
T PF04826_consen 81 LSVNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS---SGSEKTKVQ 153 (254)
T ss_pred cCCChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH---cCChHHHHH
Confidence 9999999998854 477777766553 668999999999999988888777754 7999999995 588899999
Q ss_pred HHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcc-----------ccccccC-
Q 007131 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS-----------AVGQEAG- 600 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----------~~~~~~g- 600 (617)
++.+|.|||.++.....++.++++..++.++....+.++...+.....||..+-..+.... ..+.+.+
T Consensus 154 vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~ 233 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQ 233 (254)
T ss_pred HHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHH
Confidence 9999999999999988999889999999999877667899999999999975332221111 1122333
Q ss_pred cHHHHHHHhcCCCCCCC
Q 007131 601 ALEALVQLTRSPHEGVR 617 (617)
Q Consensus 601 ~~~~L~~ll~~~~~~vr 617 (617)
..++|..+..+++++||
T Consensus 234 ~~~~l~~l~~h~d~ev~ 250 (254)
T PF04826_consen 234 LAKKLQALANHPDPEVK 250 (254)
T ss_pred HHHHHHHHHcCCCHHHh
Confidence 56777778888888775
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-13 Score=143.14 Aligned_cols=221 Identities=24% Similarity=0.285 Sum_probs=180.4
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCC--cccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDE--NASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ 454 (617)
-.||+.+|.++.+...+++.+||++|+||...... |+ ..|.+.++++.++++|+. .|.++++.++.+|+|
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK-------lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWN 346 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK-------LAIKELNGVPTLVRLLRHTQDDEVRELITGILWN 346 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc-------hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 35779999999999999999999999999876555 43 578899999999999997 489999999999999
Q ss_pred hccchhhHHHHHHh--------------------------------------------------------CCHHHHHHHH
Q 007131 455 LSVNAKVAKAVAEE--------------------------------------------------------GGINILAVLA 478 (617)
Q Consensus 455 ls~~~~~~~~i~~~--------------------------------------------------------~~i~~L~~lL 478 (617)
|++++..|..+... |.|+.|+..+
T Consensus 347 LSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~i 426 (717)
T KOG1048|consen 347 LSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSI 426 (717)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHH
Confidence 99876655444321 3466666554
Q ss_pred h-------------------------------------------------------------------------------
Q 007131 479 R------------------------------------------------------------------------------- 479 (617)
Q Consensus 479 ~------------------------------------------------------------------------------- 479 (617)
.
T Consensus 427 q~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~ 506 (717)
T KOG1048|consen 427 QTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT 506 (717)
T ss_pred HHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc
Confidence 4
Q ss_pred -----------------------cCCHHHHHHHHHHHHHhcCCc-----chHHHH-HhcCChHHHHHHHhhcCCCCHHHH
Q 007131 480 -----------------------SMNRLVAEEAAGGLWNLSVGE-----EHKGAI-ADAGGVKALVDLIFKWSSGGDGVL 530 (617)
Q Consensus 480 -----------------------~~~~~~~~~a~~~L~nL~~~~-----~~~~~i-~~~g~i~~L~~ll~~~~~~~~~~~ 530 (617)
+.++.+.|++++||-||+... ..+..+ ..+.+++.|+++|+ .+++.++
T Consensus 507 ~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~---~~~~~vv 583 (717)
T KOG1048|consen 507 APKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR---NDDSDVV 583 (717)
T ss_pred CCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh---cCCchHH
Confidence 123456778899999998654 345555 56899999999995 5888999
Q ss_pred HHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCc-----hhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHH
Q 007131 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF-----EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (617)
Q Consensus 531 ~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L 605 (617)
+.++++|.||+.+..+++.|. .++++.|++.|..+.. +++...++.+|+|+... +..++..+.+.+++++|
T Consensus 584 ~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~---~~~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 584 RSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK---NVLNAKDLLEIKGIPKL 659 (717)
T ss_pred HHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH---hHHHHHHHHhccChHHH
Confidence 999999999999999999998 5889999999976543 78999999999999864 44477888899999999
Q ss_pred HHHhcCC
Q 007131 606 VQLTRSP 612 (617)
Q Consensus 606 ~~ll~~~ 612 (617)
+.+..+.
T Consensus 660 ~~I~~s~ 666 (717)
T KOG1048|consen 660 RLISKSQ 666 (717)
T ss_pred HHHhccc
Confidence 9988774
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-13 Score=123.29 Aligned_cols=230 Identities=21% Similarity=0.248 Sum_probs=183.3
Q ss_pred chHHHHhcChHHHHHhhc--cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHH
Q 007131 372 LDDFWLKQGAGLLLSLMQ--STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEA 448 (617)
Q Consensus 372 ~~~~~~~~~i~~l~~~l~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a 448 (617)
.|.++...|...++++|. .++.++.......+..-+.. ++.+|+.+++.+..+.+...|..+ ..++.+.+
T Consensus 138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~-------hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel 210 (461)
T KOG4199|consen 138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM-------HEVNRQLFMELKILELILQVLNREGKTRTVREL 210 (461)
T ss_pred CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-------hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHH
Confidence 344455566678888884 45566655555555543222 356678999999999999777654 45688899
Q ss_pred HHHHHHhccchhh----------HHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 449 AKAIANLSVNAKV----------AKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 449 ~~~L~~ls~~~~~----------~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
+++++.|..+++. ...|++.|+...|++.++. -+|++...++.+|..|+...+.+..|.+.||+..|+.
T Consensus 211 ~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~ 290 (461)
T KOG4199|consen 211 YDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLR 290 (461)
T ss_pred HHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999987653 4677788889999999987 4688899999999999999999999999999999999
Q ss_pred HHhhcC-CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHH-hcCCchhHHHHHHHHHHHHhccCCCCCCcccc
Q 007131 518 LIFKWS-SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA-RSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595 (617)
Q Consensus 518 ll~~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 595 (617)
++.++. .++..+.+.++..|+.|+..++++..|++.|+.+.++.++ ++.+++.+.+.++.++.-||...+. ....
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pd---hsa~ 367 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPD---HSAK 367 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcc---hHHH
Confidence 997511 1233466889999999999999999999999999999855 6666799999999999999986554 5677
Q ss_pred ccccCcHHHHHHHhcC
Q 007131 596 GQEAGALEALVQLTRS 611 (617)
Q Consensus 596 ~~~~g~~~~L~~ll~~ 611 (617)
+++.|+-...++.++.
T Consensus 368 ~ie~G~a~~avqAmka 383 (461)
T KOG4199|consen 368 AIEAGAADLAVQAMKA 383 (461)
T ss_pred HHhcchHHHHHHHHHh
Confidence 8899999888887764
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=145.51 Aligned_cols=201 Identities=25% Similarity=0.292 Sum_probs=168.6
Q ss_pred HHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
|.....+..+.||.+.++.+|-+|+..+..++..+.+-+ ..+...|+|+.||.+|.+.+.+++..||++|+||
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik-------~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIK-------SRVRQLGGIPKLVALLDHRNDEVQRQACGALRNL 302 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHH-------HHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 555556888999999999999999999999976654432 5788999999999999999999999999999999
Q ss_pred cc---chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCC-------
Q 007131 456 SV---NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS------- 524 (617)
Q Consensus 456 s~---~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~------- 524 (617)
++ +++++-.|.+.+||+.++++|+. .+.++++...++||||+..+..+..++. .++..|..-+-..++
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~ 381 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPA 381 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCc
Confidence 99 34589999999999999999997 7889999999999999999888877776 467777665543222
Q ss_pred C----CHHHHHHHHHHHHHhcc-CCCchHHHHHh-CCHHHHHHHHhc-----CCchhHHHHHHHHHHHHhc
Q 007131 525 G----GDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARS-----CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 525 ~----~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-~~~~~L~~ll~~-----~~~~~~~~~a~~~L~~l~~ 584 (617)
. ...+..++++||+|++. ..+.|+++.+. |.|..|+..+++ ..+++..++++.+|+||+.
T Consensus 382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 1 35788999999999987 66779999875 668888887762 2347899999999999986
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=138.51 Aligned_cols=474 Identities=18% Similarity=0.176 Sum_probs=249.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH------------HH----H-hcCCCccEEeccCCCCCCHHHH
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS------------II----H-LQARNLRELSGDYCRKITDATL 143 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~------------~~----~-~~~~~L~~L~l~~~~~~~~~~l 143 (617)
.++++.+.......+..+.+.+ |+++.+.+...... +. . ..-.+|++|++++...+...-.
T Consensus 63 tki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~ 140 (699)
T KOG3665|consen 63 TKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWP 140 (699)
T ss_pred EEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHH
Confidence 5677777777777777766654 88888876422110 11 1 1446899999988765655556
Q ss_pred HHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---
Q 007131 144 SVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--- 220 (617)
Q Consensus 144 ~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--- 220 (617)
..+...+|.|+.|.+.+ . .+..+.+..+..++|||..|+++++ ++++- ..+ +..++|+.|.+.+-..-+-
T Consensus 141 ~kig~~LPsL~sL~i~~--~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI-S~LknLq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISG--R-QFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI-SRLKNLQVLSMRNLEFESYQDL 213 (699)
T ss_pred HHHhhhCcccceEEecC--c-eecchhHHHHhhccCccceeecCCC-CccCc--HHH-hccccHHHHhccCCCCCchhhH
Confidence 77888899999999952 3 5656668888888999999999988 66552 222 3568888888877533322
Q ss_pred HHHhcCcCCCeecccCCCCCCHHHHH----HHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHH
Q 007131 221 VALGNVLSVRFLSVAGTSNMKWGVVS----QVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~i~~~~l~----~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
..+..+++|+.||+|......+..+. +....+|+|+.||.++++++.+.+..++...|+|+.+.+.+|........
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~~~ 293 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALSAVSS 293 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccccccc
Confidence 34577899999999987665544221 22246899999999999999999999999999999888776542222211
Q ss_pred HHHHhhcCceehhhhhcHHHHHHHHhccCCcCcchhhhhhhcccc-----C-CcchhhHHHHHHHHHHHHHHHhhccCCc
Q 007131 297 ISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKN-----K-DKNLNEIMTWLEWILSHILLRTAESNPQ 370 (617)
Q Consensus 297 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~-----~-~~~~~~~~~~~~~~~s~~~~~l~~~~~~ 370 (617)
.++ .-+..+......+.+.++.... +.....+|-..- . +........-+.....+.......
T Consensus 294 ~~i----~~ln~at~~s~i~~L~~~~~l~----r~~~v~~cl~~l~~~~~~~~~~~~~~~~~~l~~i~~sm~~~~s---- 361 (699)
T KOG3665|consen 294 TEI----RVLNTATLDSSIQALTYYLNLK----RPSEVSRCLNELLDLLKSLDSTREYDISECLKLIINSMNTFSS---- 361 (699)
T ss_pred cCc----eeeeecchhHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC----
Confidence 010 1112223333344444433332 111111111100 0 000000000000000000000000
Q ss_pred cchHHHHhcChHHHHHhhcc----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH------hc-
Q 007131 371 GLDDFWLKQGAGLLLSLMQS----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA------KS- 439 (617)
Q Consensus 371 ~~~~~~~~~~i~~l~~~l~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL------~~- 439 (617)
+..+ .|..-+..+..+ -.+..+..++..|.|.......-. ......+. ..+-.++.++ .+
T Consensus 362 --~~~i--~~~~CL~~i~~~~~~~l~~~~~~~~l~~LLn~v~~~~~~~---~~~~~~~~--~~i~~~~~~~~~~~~~~~~ 432 (699)
T KOG3665|consen 362 --SNQI--QGSACLIHIVKHTKQRLSPLLVSLLLKVLLNLVEKLDTLD---SNDELTLC--NSIILLLSLLVSRRKLLSV 432 (699)
T ss_pred --hhhh--hHHHHHHHHHHhhhhccChHHHHHHHHHHHHhhhcccccc---cchhHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 0000 011111222211 122334445555555432211100 00000000 0000000000 00
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHH----hCCHHHHHHHH---hc--CC--HHHHHHHHHHHHHhcC-CcchHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAE----EGGINILAVLA---RS--MN--RLVAEEAAGGLWNLSV-GEEHKGAIA 507 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~----~~~i~~L~~lL---~~--~~--~~~~~~a~~~L~nL~~-~~~~~~~i~ 507 (617)
.++..+..+...+.........+..+.. .|..+....++ .- .. ..+.+.. +||+++. .++++..+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~t~~~~~~C~~~l 510 (699)
T KOG3665|consen 433 LDHHEQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFT--ALWNITDENPETCKEFL 510 (699)
T ss_pred cchhhhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHHHH--HHHhhhcCCHHHHHHHH
Confidence 1111122222222211111111111110 11112222211 11 11 1222222 9999995 558999999
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHH--HHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVH--ALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~--~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
+.||+..+.+.+.. . ...+++..+++.+.|++...+.+........+. .+-.++..-++.+.-+.|+++|+.+..+
T Consensus 511 ~~~g~~~~~~~l~~-f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 511 DNGGMKLLFKCLES-F-DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSD 588 (699)
T ss_pred hcccHHHHHHHHhh-c-cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhC
Confidence 99999999999986 3 677999999999999998766544443322222 3333444444348889999999999986
Q ss_pred CCC
Q 007131 586 GDS 588 (617)
Q Consensus 586 ~~~ 588 (617)
+++
T Consensus 589 ~~~ 591 (699)
T KOG3665|consen 589 SEK 591 (699)
T ss_pred CCc
Confidence 554
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=123.85 Aligned_cols=180 Identities=23% Similarity=0.217 Sum_probs=156.2
Q ss_pred HHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc
Q 007131 423 AVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE 501 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~ 501 (617)
.+.+.+.++.|+.+|+.. +|.+++.|..++.+.+..+.+++.+.+.||++.+..+|.++++.+++.|+.+|.|++.+.+
T Consensus 7 ~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 7 NILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 457888899999999965 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 502 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
++..+-. .++.+++.... ..-+..++..++++|.||+..++.+..+.. .++.++.++.+++ ..++..+..+|.|
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s-~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~-~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVS-SPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGS-EKTKVQVLKVLVN 160 (254)
T ss_pred hHHHHHH--HHHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 9988754 57777776653 334668999999999999988888777754 7899999999986 8999999999999
Q ss_pred HhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 582 l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
|+..++ ....+..+.++..++.+++..
T Consensus 161 LS~np~----~~~~Ll~~q~~~~~~~Lf~~~ 187 (254)
T PF04826_consen 161 LSENPD----MTRELLSAQVLSSFLSLFNSS 187 (254)
T ss_pred hccCHH----HHHHHHhccchhHHHHHHccC
Confidence 998433 456666778899999998875
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=119.53 Aligned_cols=174 Identities=18% Similarity=0.262 Sum_probs=143.0
Q ss_pred cccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 007131 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALE 154 (617)
Q Consensus 79 ~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~ 154 (617)
..+.+.+.+.+.++.++..+.+. .+|..|++++|..... .+..+|+.|..|+++.|...++..-..+..--++|.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred hhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 34677888889999999888887 8999999999966533 344589999999999999666664444555668999
Q ss_pred eEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH---hcCcCCCe
Q 007131 155 SLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL---GNVLSVRF 231 (617)
Q Consensus 155 ~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l---~~~~~L~~ 231 (617)
.|+|+| +..++.+..+..++..||+|.+|+|++|..+++..+..+. .++.|++|.++.|..+....+ ...|.|.+
T Consensus 290 ~LNlsG-~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 290 QLNLSG-YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhh-hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 999985 5557778889999999999999999999999997777666 469999999999998888764 67799999
Q ss_pred ecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 232 LSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 232 L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++.+| ++|..+.-+...||+|+.
T Consensus 368 Ldv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 368 LDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred EEeccc--cCchHHHHHHHhCccccc
Confidence 999997 667777777778888764
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=101.15 Aligned_cols=117 Identities=39% Similarity=0.529 Sum_probs=107.0
Q ss_pred HHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-
Q 007131 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE- 500 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~- 500 (617)
.+.+.|+++.+++++.+.+++++..|+.+|.+++.+ ++.+..+.+.|+++.++++|.++++.++..|+++|+||+.++
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999997 788889999999999999999999999999999999999877
Q ss_pred chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 501 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
..+..+.+.|+++.+++++. +.+..+++.++++|++|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~---~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLD---SSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHh---cCCHHHHHHHHHHHHHhhC
Confidence 56777788999999999996 4678999999999999973
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-11 Score=118.96 Aligned_cols=187 Identities=22% Similarity=0.239 Sum_probs=124.4
Q ss_pred hCCCceEEEecCCCCccHH---HHh--cCCCccEEeccCCCCCCHHHHHHH---HhcC-CCcceEEEcCCCCCCCCHHHH
Q 007131 101 RCMNLQKLRFRGAESADSI---IHL--QARNLRELSGDYCRKITDATLSVI---VARH-EALESLQLGPDFCERITSDAV 171 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~~~l~~i---~~~~-~~L~~L~l~~~~~~~i~~~~l 171 (617)
.+++|++|++++|.+.... +.. ..++|++|++++|. +++.++..+ ...+ ++|+.|+++ +| .++..+.
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~--~n-~l~~~~~ 154 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLG--RN-RLEGASC 154 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcC--CC-cCCchHH
Confidence 3678888888888765321 111 11568888888876 665554443 3345 788888885 35 5664443
Q ss_pred HH---HHhcCCCCCeeeccCccCCcHHHHHHHHh---cCCCCceEeecCCCCCCHHH-------HhcCcCCCeecccCCC
Q 007131 172 KA---IALCCPKLKKLRLSGIRDICGDAINALAK---LCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTS 238 (617)
Q Consensus 172 ~~---l~~~~~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~-------l~~~~~L~~L~l~~~~ 238 (617)
.. ....+++|++|++++| .+++.++..+.. .+++|++|++++| .+++.+ +..+++|++|++++|
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n- 231 (319)
T cd00116 155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN- 231 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-
Confidence 33 3344678888888887 677666655443 3358888888888 565433 346678888888887
Q ss_pred CCCHHHHHHHHhcC----CCCCeEEeccCCCCHH---HHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 239 NMKWGVVSQVWHKL----PKLVGLDVSRTDVGPI---TISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 239 ~i~~~~l~~l~~~~----~~L~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.+++.++..+...+ +.|++|++++|.+++. .+...+..+++|+++++++|....+.
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 57777776666554 6888888888887643 33445555678888888888755443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-11 Score=100.95 Aligned_cols=116 Identities=43% Similarity=0.508 Sum_probs=105.0
Q ss_pred HHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 464 AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 464 ~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
.+++.|+++.++++|.+.++.+++.|+.+|++++.. ++.+..+.+.|+++.++++|. +.++.++..|+++|+|++.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHcc
Confidence 467889999999999999999999999999999987 688889999999999999995 4788999999999999998
Q ss_pred CCC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 543 DDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 543 ~~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..+ .+..+.+.|+++.+++++..++ .++++.|+++|.+|+
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhh
Confidence 764 4666788899999999999874 899999999999997
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-10 Score=121.53 Aligned_cols=190 Identities=21% Similarity=0.287 Sum_probs=132.3
Q ss_pred CceEEEecCCCCccHHHHh-cCCCccEEeccCCCCCCHHH-----------HHHHH--hcCCCcceEEEcCCCCCCCCHH
Q 007131 104 NLQKLRFRGAESADSIIHL-QARNLRELSGDYCRKITDAT-----------LSVIV--ARHEALESLQLGPDFCERITSD 169 (617)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-----------l~~i~--~~~~~L~~L~l~~~~~~~i~~~ 169 (617)
+++.+++.+.......... ....|++|.+.+...+.... +..++ ..-.+|++|+++| ...++..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G--~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG--SELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc--cchhhcc
Confidence 5777887776554443322 44458888877654322211 11121 1234899999975 6677888
Q ss_pred HHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHH
Q 007131 170 AVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQV 248 (617)
Q Consensus 170 ~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l 248 (617)
....++..+|+|++|.+.+. .+..+.+..++..+|||..||++++ .+++ .|++.+++|+.|.+.+-.--+...+..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHHH
Confidence 88899999999999999987 5555568889999999999999999 4554 8899999999999977533344666666
Q ss_pred HhcCCCCCeEEeccCCC--CHHHHHHHHh---cCCCCCEEEccCCCCCChhHHHHH
Q 007131 249 WHKLPKLVGLDVSRTDV--GPITISRLLT---SSKSLKVLCALNCPVLEEENNISA 299 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~--~~~~l~~~~~---~~~~L~~L~l~~c~~~~~~~~~~~ 299 (617)
+ ++.+|+.||+|.... ....+...+. .+|+|++||.++.. +.+..++.+
T Consensus 217 F-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~l 270 (699)
T KOG3665|consen 217 F-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEEL 270 (699)
T ss_pred h-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHH
Confidence 6 489999999999422 2223333333 38999999999665 444444443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.7e-12 Score=134.37 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=150.2
Q ss_pred CCCCHHHHHHHHHhCCCceEEEecCCCCccH----HHHhcCCCccEEeccC-CCCCCHHH--HHHHHhcCCCcceEEEcC
Q 007131 88 HKCDIAMAASLASRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDY-CRKITDAT--LSVIVARHEALESLQLGP 160 (617)
Q Consensus 88 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~-~~~~~~~~--l~~i~~~~~~L~~L~l~~ 160 (617)
...+......+...+++|+.|.+.+|..... .+...+++|+.|++++ |..+++.. ...+...|++|+.|++.
T Consensus 173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~- 251 (482)
T KOG1947|consen 173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS- 251 (482)
T ss_pred ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh-
Confidence 3456667777777789999999988855432 2334888999999887 34343333 44567788899999995
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccC
Q 007131 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAG 236 (617)
Q Consensus 161 ~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~ 236 (617)
+|..++|.++..++..|++|++|.+.+|..++++++..++..||+|++|++++|..+++.++ .+|++|+.|.+..
T Consensus 252 -~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 252 -GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred -hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 58778999999988889999999988886689999999998899999999999888877654 4566655554433
Q ss_pred C---CCCC------------HHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCC--------------CEEEccC
Q 007131 237 T---SNMK------------WGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL--------------KVLCALN 287 (617)
Q Consensus 237 ~---~~i~------------~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L--------------~~L~l~~ 287 (617)
+ ..++ +........+|++|+++.+.++..++..+..++.+||+| +.|+++.
T Consensus 331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSD 410 (482)
T ss_pred cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEeccc
Confidence 2 2232 244445557788888888888665555556666677766 6677777
Q ss_pred CCCCChhHHHH
Q 007131 288 CPVLEEENNIS 298 (617)
Q Consensus 288 c~~~~~~~~~~ 298 (617)
|...++..+..
T Consensus 411 ~~~~t~~~l~~ 421 (482)
T KOG1947|consen 411 CRLVTDKGLRC 421 (482)
T ss_pred CccccccchHH
Confidence 77666666444
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=115.85 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=107.4
Q ss_pred cccCCCCCCCCHHH---HHHHHHhCCCceEEEecCCCCc--cH----HH--HhcCCCccEEeccCCCCC--CHHHHHHHH
Q 007131 81 SSLDLRAHKCDIAM---AASLASRCMNLQKLRFRGAESA--DS----II--HLQARNLRELSGDYCRKI--TDATLSVIV 147 (617)
Q Consensus 81 ~~l~l~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~--~~----~~--~~~~~~L~~L~l~~~~~~--~~~~l~~i~ 147 (617)
..+++.+..++... +.......+++++++++++... .. .. ...+++|++|++++|... ....+..+.
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 45555555554432 2223334455777777665443 11 00 114567777777766522 112233333
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHH---hcC-CCCCeeeccCccCCcHHHHHH---HHhcCCCCceEeecCCCCCCH
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIA---LCC-PKLKKLRLSGIRDICGDAINA---LAKLCPNLTDIGFLDCLNVDE 220 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~---~~~-~~L~~L~l~~~~~i~~~~l~~---l~~~~~~L~~L~l~~~~~~~~ 220 (617)
.. ++|+.|+++ +| .+++.++..+. ..+ ++|+.|++++| .++..+... ....+++|++|++++| .+++
T Consensus 106 ~~-~~L~~L~ls--~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~ 179 (319)
T cd00116 106 RS-SSLQELKLN--NN-GLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN-GIGD 179 (319)
T ss_pred cc-CcccEEEee--CC-ccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC-CCch
Confidence 33 557777774 23 45554444332 223 66777777776 455333222 2334456777777776 4553
Q ss_pred HH-------HhcCcCCCeecccCCCCCCHHHHHHH---HhcCCCCCeEEeccCCCCHHHHHHHHhcC----CCCCEEEcc
Q 007131 221 VA-------LGNVLSVRFLSVAGTSNMKWGVVSQV---WHKLPKLVGLDVSRTDVGPITISRLLTSS----KSLKVLCAL 286 (617)
Q Consensus 221 ~~-------l~~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~l~~~~~~~----~~L~~L~l~ 286 (617)
.+ +..+++|++|++++| .+++.+...+ ...+++|++|++++|.+++..+..+...+ +.|+.|+++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 32 233457777777776 4554444333 34566777777777766665555554443 577777777
Q ss_pred CCCC
Q 007131 287 NCPV 290 (617)
Q Consensus 287 ~c~~ 290 (617)
+|.+
T Consensus 259 ~n~i 262 (319)
T cd00116 259 CNDI 262 (319)
T ss_pred CCCC
Confidence 6653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-11 Score=130.31 Aligned_cols=198 Identities=20% Similarity=0.194 Sum_probs=168.2
Q ss_pred cCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhc
Q 007131 379 QGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 379 ~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls 456 (617)
.|+ +.+|..|.+..+++....+.+|+||.+..|.+.+ +.+-+.|-+..|+... ....+......+.+||||+
T Consensus 393 rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK------kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS 466 (2195)
T KOG2122|consen 393 RGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK------KVLRETGSVTALAACALRNKKESTLKAVLSALWNLS 466 (2195)
T ss_pred hhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH------HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh
Confidence 344 9999999999999999999999999999888863 4566889999998864 4456677888899999999
Q ss_pred cc-hhhHHHHHHhC-CHHHHHHHHhcC----CHHHHHHHHHHHHHhc----CCcchHHHHHhcCChHHHHHHHhhcCCCC
Q 007131 457 VN-AKVAKAVAEEG-GINILAVLARSM----NRLVAEEAAGGLWNLS----VGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (617)
Q Consensus 457 ~~-~~~~~~i~~~~-~i~~L~~lL~~~----~~~~~~~a~~~L~nL~----~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 526 (617)
.+ .++|..|...+ ++..|+.+|... .-.+.+.|.++|.|++ ..+++|+.+.+.+.+..|++.|+ +.+
T Consensus 467 AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK---S~S 543 (2195)
T KOG2122|consen 467 AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK---SHS 543 (2195)
T ss_pred hcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh---hcc
Confidence 94 67899998855 499999999874 3368899999999876 46689999999999999999996 477
Q ss_pred HHHHHHHHHHHHHhc-cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 527 DGVLERAAGALANLA-ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
-.++.+++++||||+ .+.+..+.+++.|+++.|-.++++.+ .-+-..++.+|.||-...
T Consensus 544 LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh-kMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 544 LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH-KMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-hhhhhhHHHHHHHHhcCC
Confidence 789999999999997 56777899999999999999999875 677788999999998754
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-11 Score=125.47 Aligned_cols=139 Identities=29% Similarity=0.433 Sum_probs=109.1
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHH--HHHHHhcCCCCCeeeccCccCCcHHHHHHH
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDA--VKAIALCCPKLKKLRLSGIRDICGDAINAL 200 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~--l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l 200 (617)
.++.|+.|.+..|..+++.++..+...|++|+.|++++ .|..++..+ ...+...|++|+.|+++++..+++.++..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG-CCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccC-cccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 57888888888888888888888888888899988863 133333322 444667788888888888866888888888
Q ss_pred HhcCCCCceEeecCCCCCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 201 AKLCPNLTDIGFLDCLNVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+..||+|++|.+.+|..+++.++ ..|++|++|++++|..+++.++..+..+|++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 88888899888888876888765 567888888888888888888888888888887776555
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=107.73 Aligned_cols=186 Identities=19% Similarity=0.221 Sum_probs=133.1
Q ss_pred HHHhCCCceEEEecCCCCccHHH------HhcCCCccEEeccCCCCCCHHHHHHH------------HhcCCCcceEEEc
Q 007131 98 LASRCMNLQKLRFRGAESADSII------HLQARNLRELSGDYCRKITDATLSVI------------VARHEALESLQLG 159 (617)
Q Consensus 98 l~~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~l~~i------------~~~~~~L~~L~l~ 159 (617)
....||.|+.|+|+.+.+....+ ..+|..|++|.|.+|. +...+-..+ ...-+.|+++..+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34467899999999886653221 1268999999999997 544432221 1245689999996
Q ss_pred CCCCCCCCHHHHH---HHHhcCCCCCeeeccCccCCcHHHHHHHH---hcCCCCceEeecCCCCCCHH-H------HhcC
Q 007131 160 PDFCERITSDAVK---AIALCCPKLKKLRLSGIRDICGDAINALA---KLCPNLTDIGFLDCLNVDEV-A------LGNV 226 (617)
Q Consensus 160 ~~~~~~i~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~-~------l~~~ 226 (617)
.+.+.+.+.. ...+.+|+|+.+.++.+ .|..+++..+. .+||+|+.||+.+|. ++.. + ++.+
T Consensus 166 ---rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 166 ---RNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSW 240 (382)
T ss_pred ---ccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhccc
Confidence 4455554443 44566789999999987 67766664333 679999999999994 4442 2 4677
Q ss_pred cCCCeecccCCCCCCHHHHHHHH----hcCCCCCeEEeccCCCCHHHHHHH---HhcCCCCCEEEccCCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVGPITISRL---LTSSKSLKVLCALNCPV 290 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l~~~~~~~~~l~~~---~~~~~~L~~L~l~~c~~ 290 (617)
++|+.|++++| .+.+.+...+. ...|+|+.|.+.+|+++.++...+ ...-|.|+.|++++|..
T Consensus 241 ~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 89999999998 66666654444 568999999999999876654433 33478999999999985
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-10 Score=107.07 Aligned_cols=200 Identities=18% Similarity=0.121 Sum_probs=169.2
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 470 (617)
.++++.+.|...|.|||..-.-. .++.....+..||+.|...+.++.......|..||...+++..+.+.|.
T Consensus 275 KQeqLLrva~ylLlNlAed~~~E--------lKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~i 346 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAEDISVE--------LKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGI 346 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccH
Confidence 45677788899999997543222 3677888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 550 (617)
|+.|+++.....++++..+...|.|++++..++.+++..|.+|.|+.++. ++.-..-|+..|..++.+++.+..+
T Consensus 347 veKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~-----~d~~~~iA~~~lYh~S~dD~~K~Mf 421 (791)
T KOG1222|consen 347 VEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD-----SDTKHGIALNMLYHLSCDDDAKAMF 421 (791)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC-----CcccchhhhhhhhhhccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999994 3344556888999999999999999
Q ss_pred HHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHH
Q 007131 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (617)
Q Consensus 551 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ 607 (617)
.....++.+++.+-++...++.......-.|||. +..+++.+.+..++..|.+
T Consensus 422 ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l----nkRNaQlvceGqgL~~LM~ 474 (791)
T KOG1222|consen 422 AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL----NKRNAQLVCEGQGLDLLME 474 (791)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh----ccccceEEecCcchHHHHH
Confidence 9999999999977666557887777777789997 3335666666666766655
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-09 Score=109.11 Aligned_cols=216 Identities=17% Similarity=0.113 Sum_probs=176.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...++..+.+....++.+|..+...... .-...+..+.|...|.++++.+|..++..|.+++.+.+.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~----------~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~ 110 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSP----------DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG 110 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4466677776777778888888887533211 222677788999999999999999999999999987665
Q ss_pred -HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 -AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 -~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
...+.+.+.++.++.++.+++.++.+.|+.+|.+++..+.....+...+.++.|..++.. .++.++..+..++.++
T Consensus 111 ~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~---~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ---SSDIVRCRVYELLVEI 187 (503)
T ss_pred HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc---cCHHHHHHHHHHHHHH
Confidence 455556777899999999999999999999999999988888888888889999999953 4678899999999999
Q ss_pred ccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCC
Q 007131 541 AADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 541 ~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
+..+ +....+.+.|.++.++..+.++ +.-++.+|+.+|..|+..+.+ ...+.+.|+++.|..++.....+
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g----~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHG----LQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhH----HHHHHhCCHHHHHHHHHhccccC
Confidence 8655 4567777789999999999985 488999999999999985554 56677899999999999876544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-10 Score=78.76 Aligned_cols=46 Identities=39% Similarity=0.763 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCC
Q 007131 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDL 85 (617)
Q Consensus 40 ~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l 85 (617)
|..||+|++.+||+||+.+|+.+++.|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 6789999999999999999999999999999999988899988765
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.3e-09 Score=103.56 Aligned_cols=220 Identities=19% Similarity=0.139 Sum_probs=157.1
Q ss_pred HHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh------hCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 382 GLLLSLMQS--TQEDVQERAATGLATFVVINDENASIDCGRAEAVMK------DGGIRLLLDLAKSWREGLQSEAAKAIA 453 (617)
Q Consensus 382 ~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~------~~~i~~Lv~lL~~~~~~~~~~a~~~L~ 453 (617)
..++.+|+. .++++....+..+..+...+.... +.+.+ .....++++++..+|..++..|+.+|.
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~-------~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRV-------ELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSH-------HHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHH-------HHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 566677743 678889999999998866654332 33332 236788999998899999999999999
Q ss_pred HhccchhhHHHHHHhCCHHHHHHHHhc----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh----cCCC
Q 007131 454 NLSVNAKVAKAVAEEGGINILAVLARS----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK----WSSG 525 (617)
Q Consensus 454 ~ls~~~~~~~~i~~~~~i~~L~~lL~~----~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~ 525 (617)
.+....+.+..-...+.++.+++.|++ .+.+.+..|+.+|.+|...+++|..+.+.|+++.++.++.. ....
T Consensus 131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 999855543333224557888888876 33456789999999999999999999999999999999921 1456
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHH
Q 007131 526 GDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L 605 (617)
..+++++++-|+|.|+.+++....+.+.+.++.|+++++....+++..-+.+++.|+...+... ....++..|+++.+
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~--~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS--NIELMVLCGLLKTL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT--HHHHHHHH-HHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH--HHHHHHHccHHHHH
Confidence 6789999999999999999999999999999999999987767999999999999999754432 55666667755555
Q ss_pred HHHhc
Q 007131 606 VQLTR 610 (617)
Q Consensus 606 ~~ll~ 610 (617)
-.+..
T Consensus 289 ~~L~~ 293 (312)
T PF03224_consen 289 QNLSE 293 (312)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 54443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-11 Score=113.84 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=138.1
Q ss_pred CCCceEEEecCCCCccHH---HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 102 CMNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
...|+.+.|.++...... ....|++++.|+|+..-.-....+..++..+|+|+.|+|+. + .+....=......+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-N--rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-N--RLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-c--cccCCccccchhhh
Confidence 355778888877655443 34479999999999876445667889999999999999972 1 12110001111246
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHH--HHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV--ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+.|+.|.|++| +++...+..+...||+|+.|.+.+|..+.-. ...-++.|+.|+|+++..++.+.+ .....+|.|+
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-YKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-cccccccchh
Confidence 88999999999 8999999999999999999999998533322 235578999999999877765443 3345789999
Q ss_pred eEEeccCCCCHHHHHHH-----HhcCCCCCEEEccCCCCCChhHHH
Q 007131 257 GLDVSRTDVGPITISRL-----LTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~-----~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
.|+++.+.++.-+.+.. ...+|+|++|++..|++..=..++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~ 320 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN 320 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc
Confidence 99999986655443332 456899999999999875444433
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=97.46 Aligned_cols=224 Identities=22% Similarity=0.229 Sum_probs=170.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-------CHHHHHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIAN 454 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ 454 (617)
+.|.+...+++.++-..++++|.|+++.+++++ ..+.+.||-..+++.|+.. +.+....++++|.|
T Consensus 90 e~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R-------~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 90 ELLRQTPSSPDTEVHEQCFRALGNICYDNNENR-------AAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred HHHHhCCCCCcccHHHHHHHHHhhhhccCchhH-------HHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 677777788888999999999999998888775 7899999988888888642 34678888999999
Q ss_pred hcc-chhhHHHHHHhCCHHHHHHHHh---------------------------------------------c-CCHHHHH
Q 007131 455 LSV-NAKVAKAVAEEGGINILAVLAR---------------------------------------------S-MNRLVAE 487 (617)
Q Consensus 455 ls~-~~~~~~~i~~~~~i~~L~~lL~---------------------------------------------~-~~~~~~~ 487 (617)
.+. +++.+..+.+.|.++.|...+- + .+++..+
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 887 5667888888888776654332 1 1223444
Q ss_pred HHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh----------------------------------------------
Q 007131 488 EAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---------------------------------------------- 521 (617)
Q Consensus 488 ~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~---------------------------------------------- 521 (617)
....+|+..+.++..+..+.+.|.+..++++++.
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 5566667777777777777777776666665542
Q ss_pred -cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc----CCchhHHHHHHHHHHHHhccCCCCCCccccc
Q 007131 522 -WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS----CKFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (617)
Q Consensus 522 -~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (617)
.++++..++..+.-+++|+++.++....+++.+.+..|+.++.. .++-+++.+++.+|+|+.- +-. ++..+
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~---nka~~ 398 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVS---NKAHF 398 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCC---chhhc
Confidence 02245567778888999999999999999999999999998843 2236899999999999997 332 56677
Q ss_pred cccCcHHHHHHHhcCCCCCC
Q 007131 597 QEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 597 ~~~g~~~~L~~ll~~~~~~v 616 (617)
..+|..+.+...++...+.|
T Consensus 399 ~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 399 APAGVTEAILLQLKLASPPV 418 (604)
T ss_pred cccchHHHHHHHHHhcCCcc
Confidence 78999999999888877655
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=106.72 Aligned_cols=193 Identities=16% Similarity=0.119 Sum_probs=162.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...|.++++.++..++..+.+++...+... ..+.+.+.++.++..+.+++..+...|+.+|.+++.++..
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~-------~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA-------QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH-------HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 888899999999999999999999875554432 4667899999999999999999999999999999999888
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.+.+...+++..|..++...++.++..+..++.+++. +++....+.+.|.++.++..+. +++.-++.+|+.+|..|
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSEL 229 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHH
Confidence 8888888889999999988888899999999999985 4567777777999999999995 47777899999999999
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchh-----HHHHHHHHHHHHhc
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEG-----VQEQAARALANLAA 584 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~-----~~~~a~~~L~~l~~ 584 (617)
+..+.+...+.+.|+++.|..++.+...+. ..........+++.
T Consensus 230 a~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 230 AETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 998899999999999999999997543222 22333455566665
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=99.55 Aligned_cols=185 Identities=19% Similarity=0.165 Sum_probs=142.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc----CCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS----WREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~----~~~~~~~~a~~~L~~ls~ 457 (617)
..++.++.+++..++..|+..|..|+...+... .-...+.++.++.++.+ ++.+++..|+.+|.+|..
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~--------~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS--------EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT----------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc--------cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 677788888899999999999999987766542 22225677889988876 345678999999999999
Q ss_pred chhhHHHHHHhCCHHHHHHHH-----hc--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLA-----RS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL-----~~--~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 530 (617)
.++.|..+.+.+|++.++.+| .. .+..++.+++.++|-|+++++....+...+.++.|+++++. +..+++.
T Consensus 180 ~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvv 257 (312)
T PF03224_consen 180 SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVV 257 (312)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHH
T ss_pred cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHH
Confidence 999999999999999999999 22 34578899999999999999999999998999999999985 6788999
Q ss_pred HHHHHHHHHhccCCC--chHHHHHhCCHHHHHHHHhcC-CchhHHHHHH
Q 007131 531 ERAAGALANLAADDK--CSMEVALAGGVHALVMLARSC-KFEGVQEQAA 576 (617)
Q Consensus 531 ~~a~~~L~~l~~~~~--~~~~i~~~~~~~~L~~ll~~~-~~~~~~~~a~ 576 (617)
+-+++++.|+...+. ....|+..|+++.+-.+.... .++++.+..-
T Consensus 258 Rv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 258 RVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999998766 788888877777666665432 2356655443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=98.25 Aligned_cols=224 Identities=17% Similarity=0.118 Sum_probs=169.7
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
...|+ +.|+++....+++++...++.+.||+.... . |.+++..|.+|.+..+|.+.. -...|+.++.++
T Consensus 342 ~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g-l-------r~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~ 411 (791)
T KOG1222|consen 342 EQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG-L-------RPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHL 411 (791)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-c-------cHHHhhccchHHHHHHhCCcc--cchhhhhhhhhh
Confidence 45566 999999999999999999999999854433 2 368999999999999998543 345789999999
Q ss_pred ccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH------------Hhh-
Q 007131 456 SVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDL------------IFK- 521 (617)
Q Consensus 456 s~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~l------------l~~- 521 (617)
|.+++.+.++...++|+.+++.+-+ .+.++-......-.||+.+..|.+.+++..++..|++. ++.
T Consensus 412 S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni 491 (791)
T KOG1222|consen 412 SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI 491 (791)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence 9999999999999999999988655 45555555555556888877777777776676665532 211
Q ss_pred ----------------------cCCCCHHHHHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcC-CchhHHHHHHH
Q 007131 522 ----------------------WSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSC-KFEGVQEQAAR 577 (617)
Q Consensus 522 ----------------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~-~~~~~~~~a~~ 577 (617)
..+.++.....++++|+||+..+-....+.+ ...+|.+-.-|+.+ +.++++...+-
T Consensus 492 SqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi 571 (791)
T KOG1222|consen 492 SQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVI 571 (791)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHH
Confidence 0124566788899999999988877777764 57789998887754 34677777777
Q ss_pred HHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 578 ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 578 ~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++..++.+.+ -+..+..+|.|+.++++++...+
T Consensus 572 ~~GT~a~d~~----cA~Lla~a~~i~tlieLL~a~Qe 604 (791)
T KOG1222|consen 572 ACGTMARDLD----CARLLAPAKLIDTLIELLQACQE 604 (791)
T ss_pred HhhhhhhhhH----HHHHhCccccHHHHHHHHHhhcc
Confidence 7887776433 24555678999999999998544
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.2e-08 Score=91.27 Aligned_cols=185 Identities=23% Similarity=0.197 Sum_probs=148.1
Q ss_pred cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHh
Q 007131 390 STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEE 468 (617)
Q Consensus 390 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~ 468 (617)
+.+.+.+..|+.-|..++..=|.. ..++..|++..++..+++.+..+|+.|+++|+.+++ ++...+.+.+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnA--------ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNA--------NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhH--------HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 346777888988888886543333 478999999999999999999999999999999999 67789999999
Q ss_pred CCHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc
Q 007131 469 GGINILAVLARSMN-RLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC 546 (617)
Q Consensus 469 ~~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~ 546 (617)
||.+.|+.++.+.+ ..++..|..|+.+|-.+. .....+...+|...|..+|.. .+.+..+++.|+..+..|...+..
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhh
Confidence 99999999998754 467799999999999755 688888899999999999976 557788999999999999865544
Q ss_pred hHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 547 SMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 547 ~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
...+.. .++...+..+..+. +.++.+.|..++..+..
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 333544 44444455555555 47888888887776654
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-09 Score=124.01 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=23.8
Q ss_pred cCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.+++|++|++++|.++.. ++..+.++++|+.|++++|....
T Consensus 282 ~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred hccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCCCccCC
Confidence 455666666666554332 24445566777777777766543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.3e-08 Score=91.03 Aligned_cols=192 Identities=17% Similarity=0.198 Sum_probs=94.5
Q ss_pred HHHHHHhCCCceEEEecCCCCccHHH---H---hcCCCccEEeccCCCC--CCHHH------HHHHHhcCCCcceEEEcC
Q 007131 95 AASLASRCMNLQKLRFRGAESADSII---H---LQARNLRELSGDYCRK--ITDAT------LSVIVARHEALESLQLGP 160 (617)
Q Consensus 95 ~~~l~~~~~~L~~L~l~~~~~~~~~~---~---~~~~~L~~L~l~~~~~--~~~~~------l~~i~~~~~~L~~L~l~~ 160 (617)
+.........++.++|+|+++..... . ...++|+..++++-.. ..+.. +......||+|++|+|+-
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33344444556666666665543211 1 1345566666554321 11111 222233566666666641
Q ss_pred CCCCCCCHH---HHHHHHhcCCCCCeeeccCccCCcHHHHHHHH------------hcCCCCceEeecCCCCCCHH----
Q 007131 161 DFCERITSD---AVKAIALCCPKLKKLRLSGIRDICGDAINALA------------KLCPNLTDIGFLDCLNVDEV---- 221 (617)
Q Consensus 161 ~~~~~i~~~---~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~------------~~~~~L~~L~l~~~~~~~~~---- 221 (617)
+-++.. ++..+..+|.+|++|.|.+| .++..+-..+. ...|+|+++....| .+.+.
T Consensus 102 ---NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~ 176 (382)
T KOG1909|consen 102 ---NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATA 176 (382)
T ss_pred ---cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHH
Confidence 133332 33344455666666666666 55444322211 12356666666655 33321
Q ss_pred ---HHhcCcCCCeecccCCCCCCHHHHHHH---HhcCCCCCeEEeccCCCC---HHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 222 ---ALGNVLSVRFLSVAGTSNMKWGVVSQV---WHKLPKLVGLDVSRTDVG---PITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 222 ---~l~~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.++.++.|+.+.+..+ .|...++..+ +.+||+|+.||+..|-++ ...+...+..+|+|+.|++++|..-+
T Consensus 177 ~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 2355566666666664 3433333222 245666666666665443 33444555556666666666665333
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.2e-09 Score=121.28 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=44.5
Q ss_pred CCCCceEeecCCCCCC--HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 204 CPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
+++|++|++++|.... ...+..+++|++|++++|. ++.. +......+++|++|++++|.++.. ++..+.++++|+
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 287 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLI 287 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-eccc-cChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcC
Confidence 4555555555552111 1334555666666666552 2211 122234566777777776654332 233344577777
Q ss_pred EEEccCCCCC
Q 007131 282 VLCALNCPVL 291 (617)
Q Consensus 282 ~L~l~~c~~~ 291 (617)
.|++++|...
T Consensus 288 ~L~Ls~n~l~ 297 (968)
T PLN00113 288 SLDLSDNSLS 297 (968)
T ss_pred EEECcCCeec
Confidence 7777777644
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.8e-08 Score=92.76 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=70.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
++.|.+.|.+.+..++..|+.+|..+. +...++.+.+++.+.++.+|..|+++|+.|...+.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~------------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRG------------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC------------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 378888999999999999999988652 22345677888888899999999999998765332
Q ss_pred hHHHHHHhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhcC
Q 007131 461 VAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~ 498 (617)
. ....++.|..+ ++++++.|+..|+.+|+++..
T Consensus 87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 1 12235666666 556778888888888888753
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8e-08 Score=77.45 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=115.6
Q ss_pred HHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch
Q 007131 424 VMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH 502 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~ 502 (617)
+-..+.+..||.-.+.. +.+.++....-|+|.|+++-+-..+.+.++++.++..|..+++.+++.+.++|.|+|.++.+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 34456677888877654 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHH
Q 007131 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVML 562 (617)
Q Consensus 503 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~l 562 (617)
...|.+.+++|.++..+ ++..+.....|+..+..|+..+.. +..+.....+..+.+.
T Consensus 92 ~~~I~ea~g~plii~~l---ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVL---SSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHHHHHhcCCceEEeec---CCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 99999999999999999 567778889999999999965543 6777664444444443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.7e-07 Score=89.86 Aligned_cols=221 Identities=14% Similarity=0.068 Sum_probs=161.2
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh-----CCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD-----GGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~-----~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
..++.++.. ..+++....+..+.-+...+ |.....+.+. ....+++++|...+..+...|+.+|..+
T Consensus 56 ~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-------~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l 128 (429)
T cd00256 56 KTFVNLLSQIDKDDTVRYVLTLIDDMLQED-------DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 677888854 56777788877777775443 2223445543 5678889999888899999999999999
Q ss_pred ccchhhH-HHHHHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVNAKVA-KAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~~~~~-~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
....... ......--++.+...+++. +...+..|+.+|.+|...++.|..+.+.++++.|+.+|.. .....++++.+
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~-~~~~~Ql~Y~~ 207 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSN-ATLGFQLQYQS 207 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhh-ccccHHHHHHH
Confidence 8632211 1000000234556666653 4667888889999999999999999999999999999975 33467899999
Q ss_pred HHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC---CCCccccccccCcHHHHHHHhc
Q 007131 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS---NSNNSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 534 ~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~~g~~~~L~~ll~ 610 (617)
+-|+|-|+..++....+.+.+.++.++++++...-+++..-+..+|.|+...+.. .......+++.|..+ ++..|+
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~ 286 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE 286 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence 9999999998888777778899999999998876689999999999999974421 112334556666544 444444
Q ss_pred C
Q 007131 611 S 611 (617)
Q Consensus 611 ~ 611 (617)
.
T Consensus 287 ~ 287 (429)
T cd00256 287 Q 287 (429)
T ss_pred c
Confidence 3
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-09 Score=101.87 Aligned_cols=207 Identities=19% Similarity=0.168 Sum_probs=141.6
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCcc--HH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESAD--SI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESL 156 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L 156 (617)
+.+.+.++.+........++.|++++.|+|+++-+.. .+ +...+|+|+.|+++.+... ...-...-..+++|+.|
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~-~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS-NFISSNTTLLLSHLKQL 202 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc-CCccccchhhhhhhheE
Confidence 4555666666554444788889999999999885432 22 3348999999999876521 11101111157899999
Q ss_pred EEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHH---HhcCcCCCeec
Q 007131 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVA---LGNVLSVRFLS 233 (617)
Q Consensus 157 ~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~---l~~~~~L~~L~ 233 (617)
.|+ .| .++...+..+...||+|+.|.|.++..+....... +....|++|+|++|+.++.+- +..++.|.-|+
T Consensus 203 ~l~--~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 203 VLN--SC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred Eec--cC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 996 47 78888899999999999999999884332222211 123579999999998777653 36789999999
Q ss_pred ccCCCCCCH-----HHHHHHHhcCCCCCeEEeccCCCC-HHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 234 VAGTSNMKW-----GVVSQVWHKLPKLVGLDVSRTDVG-PITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 234 l~~~~~i~~-----~~l~~l~~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++.| .+++ .+.......+|+|++|++..|.+. +..+..+ ..+++|+.|.+-.++...+..
T Consensus 278 ls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 278 LSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchh-hccchhhhhhccccccccccc
Confidence 9886 3432 222333467899999999999873 4444433 347888888877666554443
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.5e-07 Score=86.45 Aligned_cols=187 Identities=19% Similarity=0.168 Sum_probs=145.1
Q ss_pred HHHHhhC-CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 007131 422 EAVMKDG-GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-----MNRLVAEEAAGGLWN 495 (617)
Q Consensus 422 ~~i~~~~-~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~n 495 (617)
+++.+.+ .+..++.++.+.+.+.+..+.-+++|++.+++++..+++.|.+..|+.+|.. ++.+++.+++.||+|
T Consensus 308 q~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRn 387 (604)
T KOG4500|consen 308 QKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRN 387 (604)
T ss_pred HHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHh
Confidence 4566655 8899999999999999999999999999999999999999999999999865 456889999999999
Q ss_pred hcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHH-hCCHHHHHHHHhcCCchhHHH
Q 007131 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVAL-AGGVHALVMLARSCKFEGVQE 573 (617)
Q Consensus 496 L~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~-~~~~~~L~~ll~~~~~~~~~~ 573 (617)
+.....++..+...|..+.++..++. .++.++..-++.++.+-...+ ...++.+ ...+..|++.-++++...+.-
T Consensus 388 l~IPv~nka~~~~aGvteaIL~~lk~---~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~g 464 (604)
T KOG4500|consen 388 LMIPVSNKAHFAPAGVTEAILLQLKL---ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAG 464 (604)
T ss_pred ccccCCchhhccccchHHHHHHHHHh---cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhh
Confidence 99999999999999999999999964 677888888898888754333 2333332 234566777777776666666
Q ss_pred HHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 574 QAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 574 ~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
..-+.+.-+-.++.-. .....+...|+|+..|.++...
T Consensus 465 ESnRll~~lIkHs~~k-dv~~tvpksg~ik~~Vsm~t~~ 502 (604)
T KOG4500|consen 465 ESNRLLLGLIKHSKYK-DVILTVPKSGGIKEKVSMFTKN 502 (604)
T ss_pred hhhHHHHHHHHhhHhh-hhHhhccccccHHHHHHHHHHh
Confidence 6666666665543321 1334555788899999877654
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-07 Score=93.18 Aligned_cols=216 Identities=19% Similarity=0.087 Sum_probs=168.3
Q ss_pred HHHHHhhccC-CHHHHHHHHHHHhhhccc-CCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-
Q 007131 382 GLLLSLMQST-QEDVQERAATGLATFVVI-NDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV- 457 (617)
Q Consensus 382 ~~l~~~l~~~-~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~- 457 (617)
..|+.-+... ++..|..|+.-|+.+-.. .++.. .-+--...+|.|+.+|+.+ +.+++..||++|.+|..
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesL-------s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESL-------SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV 242 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhh-------ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 5667777554 778888888777755433 33332 2334556789999999986 89999999999999998
Q ss_pred chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
-++....+++.++||.|++-|.. .-.++.|.++.||-.|+..+ -.++.+.|++...+..+.= -+-.+++.|+.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDF---FSi~aQR~Alai 317 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDF---FSIHAQRVALAI 317 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHH---HHHHHHHHHHHH
Confidence 67788889999999999987765 67789999999999999763 3466778999998888842 345789999999
Q ss_pred HHHhcc--CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 537 LANLAA--DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 537 L~~l~~--~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
.+|+|. .++.-.-+++ .+|.|..+|...+ .+..+.++-++..++.......+...++...|.+....+|+...
T Consensus 318 aaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVME--ALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred HHHHHhcCCCccchHHHH--HHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 999995 3444555554 7899999998876 78999999999999876555555666777788888888887654
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=82.11 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDL 518 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~l 518 (617)
.+.+-++.|..-|..+..+-++...+...||...++..+++.++++++.|+++|+..+. ++..+..+++.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999986 45889999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCCCCccccc
Q 007131 519 IFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSC-KFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (617)
Q Consensus 519 l~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (617)
+. .+.+..++.+|+.++.++-.+ .++...+...+|...|..++.++ .+...+..|+..+..|...... ....+
T Consensus 175 ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s---~~d~~ 249 (342)
T KOG2160|consen 175 LS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS---DEDIA 249 (342)
T ss_pred Hc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh---hhhHH
Confidence 97 466778899999999999976 56688899999999999999874 3478888899999999863222 22233
Q ss_pred cccCcHHHHHHHhcCCCC
Q 007131 597 QEAGALEALVQLTRSPHE 614 (617)
Q Consensus 597 ~~~g~~~~L~~ll~~~~~ 614 (617)
-..|....++.+..+.+.
T Consensus 250 ~~~~f~~~~~~l~~~l~~ 267 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDF 267 (342)
T ss_pred HHhhhhHHHHHHhhccch
Confidence 344555555555544433
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.5e-09 Score=104.08 Aligned_cols=131 Identities=19% Similarity=0.263 Sum_probs=88.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCc---HHHHHHHHhcCCCCceEeecCCCCCCH---HHH
Q 007131 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDIC---GDAINALAKLCPNLTDIGFLDCLNVDE---VAL 223 (617)
Q Consensus 150 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~---~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l 223 (617)
+..|+.|+|+ + +.|.......+. .|++|++|+|+++ .++ ...+. ..+.|++|++++| .++. ..+
T Consensus 292 Lt~L~~L~lS--~-NaI~rih~d~Ws-ftqkL~~LdLs~N-~i~~l~~~sf~----~L~~Le~LnLs~N-si~~l~e~af 361 (873)
T KOG4194|consen 292 LTSLEQLDLS--Y-NAIQRIHIDSWS-FTQKLKELDLSSN-RITRLDEGSFR----VLSQLEELNLSHN-SIDHLAEGAF 361 (873)
T ss_pred cchhhhhccc--h-hhhheeecchhh-hcccceeEecccc-ccccCChhHHH----HHHHhhhhccccc-chHHHHhhHH
Confidence 4556666664 1 233333333333 3788888888876 443 33333 3467888888887 4443 456
Q ss_pred hcCcCCCeecccCCCC---CCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 224 GNVLSVRFLSVAGTSN---MKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 224 ~~~~~L~~L~l~~~~~---i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
..+++|+.|+++.|.- |.| ....+.+++.|+.|.+.+|++.... .+.+.+++.|++|+|.+|.+-+.
T Consensus 362 ~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gNqlk~I~-krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGNQLKSIP-KRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecCceeeecc-hhhhccCcccceecCCCCcceee
Confidence 7889999999988621 223 3444567999999999999876554 56677899999999999986543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=83.26 Aligned_cols=184 Identities=19% Similarity=0.099 Sum_probs=118.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhccch-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL-AKSWREGLQSEAAKAIANLSVNA- 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~ls~~~- 459 (617)
+.+..+++++++.+|..|+++|..|...... ....++.|..+ ++++++.++..|+.+|+++....
T Consensus 57 ~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-------------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~ 123 (280)
T PRK09687 57 RLAIELCSSKNPIERDIGADILSQLGMAKRC-------------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP 123 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-------------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc
Confidence 6778888899999999999999987321100 12345777776 56678999999999999884311
Q ss_pred -------------------hhHHHHH----H---hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 460 -------------------KVAKAVA----E---EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 460 -------------------~~~~~i~----~---~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
..|...+ + ..+++.|+.+|+++++.++..|+.+|..+....+ .+++
T Consensus 124 ~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~ 195 (280)
T PRK09687 124 LYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIRE 195 (280)
T ss_pred ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHH
Confidence 1111111 1 1236677777776667777777777776632211 3556
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcc
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS 593 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 593 (617)
.|+.+|. +.+..++..|+.+|..+- ...+++.|++.+.+++ ++..|+.+|.++-.
T Consensus 196 ~L~~~L~---D~~~~VR~~A~~aLg~~~----------~~~av~~Li~~L~~~~---~~~~a~~ALg~ig~--------- 250 (280)
T PRK09687 196 AFVAMLQ---DKNEEIRIEAIIGLALRK----------DKRVLSVLIKELKKGT---VGDLIIEAAGELGD--------- 250 (280)
T ss_pred HHHHHhc---CCChHHHHHHHHHHHccC----------ChhHHHHHHHHHcCCc---hHHHHHHHHHhcCC---------
Confidence 6777773 466677777777776642 2246778888877643 56677777777732
Q ss_pred ccccccCcHHHHHHHhc-CCCCCC
Q 007131 594 AVGQEAGALEALVQLTR-SPHEGV 616 (617)
Q Consensus 594 ~~~~~~g~~~~L~~ll~-~~~~~v 616 (617)
.-+++.|.+++. +++..|
T Consensus 251 -----~~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 251 -----KTLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred -----HhHHHHHHHHHhhCCChhH
Confidence 135788888886 555443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-05 Score=80.47 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=132.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~ 460 (617)
..++.+++.++.-++..|+..|..++..+..+.. .....-...-+...|+.. +...+..|+.+|..|...++
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~-------~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~ 176 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKME-------GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE 176 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccc-------hhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch
Confidence 5667788888888999999999999765443311 111111223444555544 47788889999999999999
Q ss_pred hHHHHHHhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSM--NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
.|..+.+.+|++.|+.+|+.. +..++..++-++|-|++.++....+.+.+.|+.++++++. +..+++.+-++.+|.
T Consensus 177 ~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~--s~KEKvvRv~l~~l~ 254 (429)
T cd00256 177 YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKE--STKEKVIRIVLAIFR 254 (429)
T ss_pred HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHh--hhhHHHHHHHHHHHH
Confidence 999999999999999999873 4588999999999999998877777788999999999984 678899999999999
Q ss_pred HhccCC-------CchHHHHHhCCHHHHHHHH
Q 007131 539 NLAADD-------KCSMEVALAGGVHALVMLA 563 (617)
Q Consensus 539 ~l~~~~-------~~~~~i~~~~~~~~L~~ll 563 (617)
||...+ .....+++.|.++.+-.+.
T Consensus 255 Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 255 NLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 998643 1245666666655444444
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=109.00 Aligned_cols=85 Identities=19% Similarity=0.292 Sum_probs=47.4
Q ss_pred cCCCCceEeecCCCCCCHH-HHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 203 LCPNLTDIGFLDCLNVDEV-ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
.+++|+.|++++|..++.- ....+++|++|++++|..+. .+....++|+.|+++++.++ .++..+..+++|+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-----~~p~~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~ 872 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-----TFPDISTNISDLNLSRTGIE--EVPWWIEKFSNLS 872 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-----cccccccccCEeECCCCCCc--cChHHHhcCCCCC
Confidence 3455555555555433321 00134555555555554332 11222356777777776654 2455566788888
Q ss_pred EEEccCCCCCChh
Q 007131 282 VLCALNCPVLEEE 294 (617)
Q Consensus 282 ~L~l~~c~~~~~~ 294 (617)
+|++++|+.+...
T Consensus 873 ~L~L~~C~~L~~l 885 (1153)
T PLN03210 873 FLDMNGCNNLQRV 885 (1153)
T ss_pred EEECCCCCCcCcc
Confidence 8888888877654
|
syringae 6; Provisional |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8e-06 Score=79.25 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=124.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC-CHHHHHHHHhc-CCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG-GIRLLLDLAKS-WREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~-~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~~ 459 (617)
+.++.++...+.-+...+.+++..++.....+.... +.. ....|...+++ .+.+....|+++|..+...+
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~--------e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~ 188 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELS--------ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD 188 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccch--------HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc
Confidence 778889988888887778889998887665553221 111 11344445555 57888899999999999999
Q ss_pred hhHHHHHHhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
+.|..++..+|+..++..+.+ .+-.++...+-++|-|++++...+.+...+.|+.|.+++. .+..++|.+-+++++
T Consensus 189 eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk--~~~KEKV~Rivlai~ 266 (442)
T KOG2759|consen 189 EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVK--ESTKEKVTRIVLAIF 266 (442)
T ss_pred chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999999999999999999953 3557899999999999999988888888999999999998 467889999999999
Q ss_pred HHhccCCC
Q 007131 538 ANLAADDK 545 (617)
Q Consensus 538 ~~l~~~~~ 545 (617)
.|+...++
T Consensus 267 ~Nll~k~~ 274 (442)
T KOG2759|consen 267 RNLLDKGP 274 (442)
T ss_pred HHHhccCc
Confidence 99987663
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-05 Score=77.84 Aligned_cols=215 Identities=13% Similarity=0.091 Sum_probs=141.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..|++++..++..++..++++|+|+...-...+ ..+.+.|+|+.+.+++.+.++.++..+.|+|+++..+.+.
T Consensus 422 ~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-------skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 422 QPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-------SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred HHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-------HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 889999988888899999999999986644432 5899999999999999999999999999999999996554
Q ss_pred HH--HHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 462 AK--AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 462 ~~--~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
.. .....=+...++.+..+++++|++.+...|+||+.+. +.-.-+.+ ...+......++. ...++ +...-..-
T Consensus 495 ~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~-a~~~p-i~ie~~~~ 572 (678)
T KOG1293|consen 495 EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKI-AIGSP-ILIEFLAK 572 (678)
T ss_pred HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhh-ccCCc-eehhhHHH
Confidence 33 3333323466778888899999999999999998765 33333333 1223333333322 22332 22222222
Q ss_pred HHHhc-cCC-CchHHHHHhCCHHHHHHHH-------hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHH
Q 007131 537 LANLA-ADD-KCSMEVALAGGVHALVMLA-------RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607 (617)
Q Consensus 537 L~~l~-~~~-~~~~~i~~~~~~~~L~~ll-------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ 607 (617)
..++. ..+ ..+.++- |-++.++-.- +...+.....++.|.+.|+....++...+..+.--.|+.+....
T Consensus 573 ~~~l~~~~d~~~~~am~--~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~s~~dr~~~~~n~i~e~~~k 650 (678)
T KOG1293|consen 573 KMRLLNPLDTQQKKAME--GIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSSSNFDRSNLKLNCIWELNNK 650 (678)
T ss_pred HHHhccchhHHHHHHHH--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCCcccchhhccccceechhhh
Confidence 33332 222 2233222 3333333211 12344788999999999999877777666666655565555443
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-05 Score=80.02 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=168.7
Q ss_pred hcChHHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 007131 378 KQGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ 454 (617)
+..|+.|++-+.+ .=.+-|+.|+.+|..+++. + +.-+...|+++|+..|+.. |+++...+...+.+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srk----------Y-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~i 89 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----------Y-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLI 89 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----------H-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 3445888888854 4567789999999988622 2 3445667789999999876 89999999999999
Q ss_pred hccchh-------h----------HHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchHHHHHh-cCChH
Q 007131 455 LSVNAK-------V----------AKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIAD-AGGVK 513 (617)
Q Consensus 455 ls~~~~-------~----------~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~-~g~i~ 513 (617)
+..+++ . .+.+.+ .+-|..++..+...+-.|+.+|...+.++-.. .+.+..+.. .-||.
T Consensus 90 l~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS 169 (970)
T KOG0946|consen 90 LTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS 169 (970)
T ss_pred HHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH
Confidence 998653 1 223333 45588888999888999999999999999643 367777766 78999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcCC---chhHHHHHHHHHHHHhccCCCC
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
.|+.+|. +..+.++-.|+-.|..|+.+.....+++. .+++..|...+.... .--|.+.+...|-||-.....
T Consensus 170 ~lmdlL~---DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S- 245 (970)
T KOG0946|consen 170 KLMDLLR---DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS- 245 (970)
T ss_pred HHHHHHh---hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc-
Confidence 9999995 46778888899999999988877666654 577888999886432 235888899999999986555
Q ss_pred CCccccccccCcHHHHHHHhcC
Q 007131 590 SNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
+...+.+.+-||+|..+|..
T Consensus 246 --NQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 246 --NQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred --hhhHHhccccHHHHHhhcCc
Confidence 67788899999999988765
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.1e-07 Score=58.86 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=37.3
Q ss_pred CCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccc
Q 007131 43 LPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSS 82 (617)
Q Consensus 43 LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~ 82 (617)
||+|++..||.+++.+|+.+++.|||+|+.+...+..|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999988888753
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.7e-06 Score=83.19 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=120.6
Q ss_pred HHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-Cc
Q 007131 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GE 500 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~ 500 (617)
.+.+......+....-..+.+....|+-.+.+++.. ...+..+...+++++|++++..++..+...+.++|.|+.. .+
T Consensus 372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 343333333333333445778888888888888874 3345556677889999999988888899999999999985 45
Q ss_pred chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHH-HhCCH-HHHHHHHhcCCchhHHHHHHHH
Q 007131 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVA-LAGGV-HALVMLARSCKFEGVQEQAARA 578 (617)
Q Consensus 501 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~~~~-~~L~~ll~~~~~~~~~~~a~~~ 578 (617)
..|..+++.|||..+..++. +.+..++..+.|+|+++..+.+...+.. ..... ..+..+..++ +..|++.+...
T Consensus 452 ~~kskfl~~ngId~l~s~~~---~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fql 527 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLT---DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQL 527 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhc---CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHH
Confidence 89999999999999999995 5777899999999999998877644432 22333 4455565665 48999999999
Q ss_pred HHHHhcc
Q 007131 579 LANLAAH 585 (617)
Q Consensus 579 L~~l~~~ 585 (617)
|+|++..
T Consensus 528 lRNl~c~ 534 (678)
T KOG1293|consen 528 LRNLTCN 534 (678)
T ss_pred HHHhhcC
Confidence 9999863
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-08 Score=102.07 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=102.5
Q ss_pred hCCCceEEEecCCCCccHHHHh--cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
+..+|+.|.|+++.....-... +..+|..|++++.. -|-..+..-...+.+|..+||+ |++++. +..-.-.+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS---~N~Lp~--vPecly~l 244 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLS---ENNLPI--VPECLYKL 244 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhcccc---ccCCCc--chHHHhhh
Confidence 3355777777776544322211 45566666666654 2222233334456688888885 555543 11112236
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHH-------
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVW------- 249 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~------- 249 (617)
++|+.|+|+++ .++.-.. -.....+|++|+++.| +++. +++..+++|+.|.+.+| .++.+++..=.
T Consensus 245 ~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 245 RNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhheeccCcC-ceeeeec--cHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhH
Confidence 78999999987 5654221 1223368888888887 4543 66777888888777665 33333321111
Q ss_pred ----------------hcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 250 ----------------HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 250 ----------------~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.-|+.|+.|.++.|.+ .++++.+.-++.|+.|++..++.+-
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~~NrL--iTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNRL--ITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhcccccce--eechhhhhhcCCcceeeccCCcCcc
Confidence 1366777777777642 2334444557777777777776653
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=68.73 Aligned_cols=110 Identities=19% Similarity=0.136 Sum_probs=97.7
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
++.|+.--.. .+.+.++....-|+|.|.++-|=..+.+.+++..+++.|. .+++.+++.+.+.|.|+|.++.++.-
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~---e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE---EQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh---cccHHHHHHhHHHHHhhccChHHHHH
Confidence 4555555444 6788999999999999999999999999999999999995 58889999999999999999999999
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
|+++++++.++..+.+++ +.+...|+.++..|+.
T Consensus 95 I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPP-EITVHSAALFLQLLEF 128 (173)
T ss_pred HHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcC
Confidence 999999999999988875 7888889999999985
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-07 Score=83.19 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=30.0
Q ss_pred HHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHH-hcCcCCCeecccCCCCCCH-HHHHHH
Q 007131 173 AIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VAL-GNVLSVRFLSVAGTSNMKW-GVVSQV 248 (617)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~~i~~-~~l~~l 248 (617)
.+...+.+|+.|+++++ .++. +..+. .+++|++|++++| .+++ .++ ..+++|++|.+++| .|.+ ..+..+
T Consensus 36 ~L~~~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L 109 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNN-KISDLNELEPL 109 (175)
T ss_dssp S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGG
T ss_pred chhhhhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCC-cCCChHHhHHH
Confidence 33333455555555555 3322 11111 2355555555555 2332 123 24555555555554 2211 111121
Q ss_pred HhcCCCCCeEEeccCCCCH--HHHHHHHhcCCCCCEEEcc
Q 007131 249 WHKLPKLVGLDVSRTDVGP--ITISRLLTSSKSLKVLCAL 286 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~~~--~~l~~~~~~~~~L~~L~l~ 286 (617)
..||+|+.|++.+|.++. .--..++..+|+|+.||-.
T Consensus 110 -~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 110 -SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred -HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 245555555555543321 1122334445555555543
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-07 Score=64.31 Aligned_cols=43 Identities=35% Similarity=0.681 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCccc
Q 007131 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWS 81 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~ 81 (617)
+|.+||+|++.+||++|+.+|+..++.|||+|+.+..+...|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 3678999999999999999999999999999999987766664
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-05 Score=87.04 Aligned_cols=191 Identities=26% Similarity=0.195 Sum_probs=116.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc---
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--- 458 (617)
+.|++.|+.+++.+|..|+.+|..+. ..++++.|++.|+++++.+|..|+.+|..+...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~------------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~ 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT------------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc------------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc
Confidence 67888899999999999999988642 233567788888878888888888887766321
Q ss_pred ------------hhhHHHHHH------hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---------c--chHHHHHh-
Q 007131 459 ------------AKVAKAVAE------EGGINILAVLARSMNRLVAEEAAGGLWNLSVG---------E--EHKGAIAD- 508 (617)
Q Consensus 459 ------------~~~~~~i~~------~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---------~--~~~~~i~~- 508 (617)
+..|...++ .+....++..|.+.++.++..|+.+|..+... + +.|....+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~a 765 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKG 765 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHH
Confidence 111221211 12345666667777777777777777654211 1 11211111
Q ss_pred --------cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 509 --------AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 509 --------~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
...++.|..++. +.++.++..|+.+|..+... ...++.+...+.+++ ..|+..|+.+|.
T Consensus 766 L~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d-~~VR~~Aa~aL~ 832 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCP---------PDDVAAATAALRASA-WQVRQGAARALA 832 (897)
T ss_pred HHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCC-hHHHHHHHHHHH
Confidence 012345555553 34556666666666555221 011244666666654 778888888887
Q ss_pred HHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+.. ...++.|+.++.+++..||
T Consensus 833 ~l~~--------------~~a~~~L~~~L~D~~~~VR 855 (897)
T PRK13800 833 GAAA--------------DVAVPALVEALTDPHLDVR 855 (897)
T ss_pred hccc--------------cchHHHHHHHhcCCCHHHH
Confidence 7631 2346899999999988876
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-07 Score=93.81 Aligned_cols=196 Identities=16% Similarity=0.148 Sum_probs=105.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccH-HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADS-IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
+.++++++++...-...+. ..|+|+.+++..+....- .......+|++|+|.++. |+...-..+ +..|.|+.|||+
T Consensus 81 ~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L-~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEEL-SALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHH-HhHhhhhhhhhh
Confidence 4678877766554333333 348899999887643321 111245678888888765 333222222 235677888885
Q ss_pred CCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccC
Q 007131 160 PDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAG 236 (617)
Q Consensus 160 ~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~ 236 (617)
.+.++.-....... -+++++|+|+++ .|++-....+. .+.+|..|.++.| .++ ...++.+++|+.|++..
T Consensus 158 ---rN~is~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 158 ---RNLISEIPKPSFPA-KVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred ---hchhhcccCCCCCC-CCCceEEeeccc-ccccccccccc-ccchheeeecccC-cccccCHHHhhhcchhhhhhccc
Confidence 22333321111111 247788888776 56554433333 2346777777766 333 24566677777777766
Q ss_pred CCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 237 TSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 237 ~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
| .|..... .-++++++|+.|.+..|++.--. .-.+-.+.++++|+|..|.
T Consensus 231 N-~irive~-ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 231 N-RIRIVEG-LTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred c-ceeeehh-hhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccch
Confidence 5 2321111 11255666676666666542110 1122346667777776664
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-06 Score=101.70 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=36.3
Q ss_pred CCCceEEEecCCCCccHHHHh-cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHL-QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++|+.|+|+++.....++.. .+++|++|++.+|..+.. +..-...+++|+.|+++ +|..+..-. . ...+++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~--~c~~L~~Lp--~-~i~l~s 705 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMS--RCENLEILP--T-GINLKS 705 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCC--CCCCcCccC--C-cCCCCC
Confidence 445555555554322222111 345566666655543322 22223345556666663 354433211 0 013455
Q ss_pred CCeeeccCcc
Q 007131 181 LKKLRLSGIR 190 (617)
Q Consensus 181 L~~L~l~~~~ 190 (617)
|+.|++++|.
T Consensus 706 L~~L~Lsgc~ 715 (1153)
T PLN03210 706 LYRLNLSGCS 715 (1153)
T ss_pred CCEEeCCCCC
Confidence 6666666553
|
syringae 6; Provisional |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-05 Score=88.00 Aligned_cols=200 Identities=25% Similarity=0.208 Sum_probs=137.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcc--cCCC----c-ccCCchhHHHHH------hhCCHHHHHHHHhcCCHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVV--INDE----N-ASIDCGRAEAVM------KDGGIRLLLDLAKSWREGLQSEA 448 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~--~~~~----~-~~~~~~~~~~i~------~~~~i~~Lv~lL~~~~~~~~~~a 448 (617)
+.|+..|..++++++..|+.+|..+.. .... . ..-++.-|...+ ..+....+++.|.++++.+|..|
T Consensus 655 ~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~A 734 (897)
T PRK13800 655 PALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEA 734 (897)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHH
Confidence 788889988999999999888876631 1110 0 001233333332 12456788899999999999999
Q ss_pred HHHHHHhcc-----------chhhHHHH----HHhC-----CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 449 AKAIANLSV-----------NAKVAKAV----AEEG-----GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 449 ~~~L~~ls~-----------~~~~~~~i----~~~~-----~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
+.+|..+.. +++.|... ...+ +++.|..+++++++.++..|+.+|.++...+.
T Consensus 735 v~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~------- 807 (897)
T PRK13800 735 VRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPD------- 807 (897)
T ss_pred HHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-------
Confidence 999987531 12223222 2211 25788888888888888888888888754311
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.++.++..|. +.+..++..|+.+|..+. ....++.|+.++.+++ ..|+..|+.+|..+..
T Consensus 808 --~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~-~~VR~~A~~aL~~~~~---- 867 (897)
T PRK13800 808 --DVAAATAALR---ASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPH-LDVRKAAVLALTRWPG---- 867 (897)
T ss_pred --hHHHHHHHhc---CCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCC-HHHHHHHHHHHhccCC----
Confidence 2355777784 467889999999998764 2345588999998875 8999999999998721
Q ss_pred CCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 589 NSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 589 ~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
+....+.|...+++++.+||
T Consensus 868 ---------~~~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 868 ---------DPAARDALTTALTDSDADVR 887 (897)
T ss_pred ---------CHHHHHHHHHHHhCCCHHHH
Confidence 12347778888888877765
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-05 Score=79.98 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=162.8
Q ss_pred hcChHHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l 455 (617)
+.-+|.|+.+|+. .+.++...||++|.+|..-..... ..+++.++||.|++-|..- -.++-+.+..+|-.|
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~-------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i 282 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS-------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKI 282 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh-------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 4445999999975 579999999999999976655543 4678999999999987653 678899999999998
Q ss_pred ccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+... -..+.++|++-..+..|.=-...+++.|+.+..|.|.. ++--.-++ .++|.|..+|. ..+.+..+.+
T Consensus 283 SR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs---~~D~k~ies~ 355 (1051)
T KOG0168|consen 283 SRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLS---YQDKKPIESV 355 (1051)
T ss_pred Hhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHh---hccchhHHHH
Confidence 8743 34788999998888888666778899999999999853 23223333 48999999995 4677889999
Q ss_pred HHHHHHhccC---CC-chHHHHHhCCHHHHHHHHhcCC---chhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHH
Q 007131 534 AGALANLAAD---DK-CSMEVALAGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606 (617)
Q Consensus 534 ~~~L~~l~~~---~~-~~~~i~~~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~ 606 (617)
+-|+..++.. ++ .-.++...|.+....+++.-.+ +..+.-....+|..+|...+- -...+.+.++...|.
T Consensus 356 ~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl---~~~tl~k~~I~~~L~ 432 (1051)
T KOG0168|consen 356 CICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL---LFRTLLKLDIADTLK 432 (1051)
T ss_pred HHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChH---HHHHHHHhhHHHHHH
Confidence 9999888742 22 3566777888888888886542 125566677777777764222 345556778888888
Q ss_pred HHhcC
Q 007131 607 QLTRS 611 (617)
Q Consensus 607 ~ll~~ 611 (617)
.++..
T Consensus 433 ~il~g 437 (1051)
T KOG0168|consen 433 RILQG 437 (1051)
T ss_pred HHHhc
Confidence 88765
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-06 Score=55.62 Aligned_cols=41 Identities=39% Similarity=0.418 Sum_probs=38.3
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
+++++..+++.|+++.|+++|++.++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.6e-05 Score=78.19 Aligned_cols=194 Identities=18% Similarity=0.140 Sum_probs=143.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-------CHHHHHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-------REGLQSEAAKAIAN 454 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-------~~~~~~~a~~~L~~ 454 (617)
+.-+.+|+..+.+.+..++..+.++....+.. ...++.+.++=+.+.+-++|+++ ....+..|+.+|..
T Consensus 8 ~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~----~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 8 EKCLSLLKSADDTERFAGLLLVTKLLDADDED----SQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHcCCCchhh----HHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 67788998888777888888999987665544 23335677888889999999873 35688999999999
Q ss_pred hccchhhH--HHHHHhCCHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 455 LSVNAKVA--KAVAEEGGINILAVLARSMNR-LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 455 ls~~~~~~--~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
++.+++.+ ..+ .+-||.|++++.+.+. ++...|..+|..++..++++..+++.|+++.|++.+.. .+...+
T Consensus 84 f~~~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E 157 (543)
T PF05536_consen 84 FCRDPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQME 157 (543)
T ss_pred HcCChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHH
Confidence 99987754 334 3349999999988777 99999999999999999999999999999999999952 556788
Q ss_pred HHHHHHHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 532 RAAGALANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
.|+.++.+++........--.. ..++.+.+.+... +...+-.++..|..+-...
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcC
Confidence 9999999987643321110111 1233344444433 2456666777777765533
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-06 Score=93.26 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=77.1
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCC--CCCCHHHHhcCcCCCeecccCCCC--CCHHH-----HHHH--
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGTSN--MKWGV-----VSQV-- 248 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~--i~~~~-----l~~l-- 248 (617)
.|+.|.+.++ .+++.++..+. ++++|+.|++++| ..+.+..+.++..|++|++|||.. +.+.. +..+
T Consensus 360 ~Lq~LylanN-~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANN-HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcC-cccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 4555666666 67777777554 5688888888887 345567778888888888888722 11111 1111
Q ss_pred ----------HhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 249 ----------WHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 249 ----------~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
...++.|+.+|++.|+++...+++.... |+|++||+++|..
T Consensus 438 hsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred cCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 1246889999999999998888877653 8999999999984
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-06 Score=79.58 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=114.2
Q ss_pred eEEEecCCCCcc----HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 106 QKLRFRGAESAD----SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 106 ~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
.-|.+.+|.... ..+...+.+++.|+|..+..-....+..+.+.+|.|+.|+|+ |+.+.. .+..+.....+|
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls---~N~L~s-~I~~lp~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS---CNSLSS-DIKSLPLPLKNL 123 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc---CCcCCC-ccccCcccccce
Confidence 344455654432 234447889999999887633456688889999999999996 766653 244443345699
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC----CCCHHHHhcC-cCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL----NVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~----~~~~~~l~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
++|-|.+. .++........+..|.++.|+++.|. .+++++.... +.+++|.+..|...-+.....+.+-+||+.
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 99999987 78888888888888999999998872 2344444333 366666666665555555555666666666
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
.+.+..+.+....-.+-...+|.+-.|+++.+.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ 235 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN 235 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccc
Confidence 666655544333222333334444455555443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-06 Score=76.91 Aligned_cols=127 Identities=28% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhc
Q 007131 124 ARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKL 203 (617)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~ 203 (617)
+..+++|+|.++. ++. +..+...+.+|+.|+|+ ++ .++. +..+. .+++|++|+++++ .++.-+ ..+...
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls--~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~ 86 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLS--NN-QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKN 86 (175)
T ss_dssp ---------------------S--TT-TT--EEE-T--TS---S----TT-----TT--EEE--SS----S-C-HHHHHH
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECC--CC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHh
Confidence 3456666666654 433 23333345677777774 23 4432 22222 2577777777776 454311 123335
Q ss_pred CCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHH-HHHHhcCCCCCeEEecc
Q 007131 204 CPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVV-SQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l-~~l~~~~~~L~~L~l~~ 262 (617)
+|+|++|.+++| .+.+ ..+..+++|+.|++.+|+-...... ..+...+|+|+.||-..
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 677777777776 3433 3456777777777777643322222 34446678888876655
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.6e-05 Score=74.08 Aligned_cols=165 Identities=22% Similarity=0.267 Sum_probs=126.7
Q ss_pred hcChHHHHHhhccCCH--HHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007131 378 KQGAGLLLSLMQSTQE--DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ 454 (617)
+.|+..|+.|+.+.+. +++.+|...|-.+... +| ++.++..| +..++.+.+.. .++.++..+.+|.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN-------~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--EN-------RDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hh-------hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 3455788999988664 4588888888875422 23 35777777 55666555543 57888999999999
Q ss_pred hccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 455 LSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 455 ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
+..+ ++.+..+++.||++.++--.+..++.+...++.+|.|.+-.. +.+..|++..+-+=|..+- .+.++-++.
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA---~skDel~R~ 325 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA---FSKDELLRL 325 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh---cchHHHHHH
Confidence 9995 557899999999999998898999999999999999998543 7888999877776676666 345667888
Q ss_pred HHHHHHHHhccCCCchHHHHHhCC
Q 007131 532 RAAGALANLAADDKCSMEVALAGG 555 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~i~~~~~ 555 (617)
.|+-+++-|+.+.+....+...|.
T Consensus 326 ~AClAV~vlat~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 326 HACLAVAVLATNKEVEREVRKSGT 349 (832)
T ss_pred HHHHHHhhhhhhhhhhHHHhhccc
Confidence 999999999988777666655554
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.8e-05 Score=72.43 Aligned_cols=180 Identities=26% Similarity=0.258 Sum_probs=137.0
Q ss_pred HHHHhhCCHHHHHHHHhcCCH--HHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcC
Q 007131 422 EAVMKDGGIRLLLDLAKSWRE--GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~--~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~ 498 (617)
+.+...|++..|++++..++. .++..|+++|-.+.. .++++.++..| ...++.+.+. ..++.....+++|.++=.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 467788999999999999864 458889988877644 45677787775 6777777665 556888899999999975
Q ss_pred Cc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC--CchHHHHHhCCHHHHHHHHhcCCchhHHHHH
Q 007131 499 GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD--KCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (617)
Q Consensus 499 ~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a 575 (617)
.+ +.++.+++.|++..++--.+. .++.+.+.++-+|+|++.+. +.+..|++..+.+.|.-+..+.+ +-++..|
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rR---t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skD-el~R~~A 327 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRR---TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKD-ELLRLHA 327 (832)
T ss_pred hhHHHHHHHHhhcccchheeeccc---CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchH-HHHHHHH
Confidence 44 788999999999998776754 56899999999999999654 45888999888899988877764 7899999
Q ss_pred HHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 576 ARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 576 ~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
|-+.+.|+...+ ....+...|.+..+--++.+
T Consensus 328 ClAV~vlat~KE----~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 328 CLAVAVLATNKE----VEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HHHHhhhhhhhh----hhHHHhhccchhhhhhhhhc
Confidence 999999987332 23344445544433334433
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00015 Score=67.67 Aligned_cols=193 Identities=19% Similarity=0.129 Sum_probs=134.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
-.+++++++.++.++..|...+..|+.. .... -.-.+...++.+.+++....+ -+.|+.++.|+|.++..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~------~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l 75 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQS------LSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL 75 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhh------hccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH
Confidence 4678999999999999999999998755 1110 011244567888889887666 67899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--c----CChHHHHHHHhhcCCCCH-HHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--A----GGVKALVDLIFKWSSGGD-GVLERAA 534 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~----g~i~~L~~ll~~~~~~~~-~~~~~a~ 534 (617)
+..+.+. -++.++..+.++........+.+|.||+..++....+.. . .++..++...-+ ++.+. .-....+
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d-~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD-KSYNAYAEFHYLA 153 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC-cccccccchhHHH
Confidence 8888877 677777777766556778889999999998865554432 2 345555444433 23332 2345677
Q ss_pred HHHHHhccCCCchHHHHHhCCHHH-HHHHHhcCCchhHH-HHHHHHHHHHhccCC
Q 007131 535 GALANLAADDKCSMEVALAGGVHA-LVMLARSCKFEGVQ-EQAARALANLAAHGD 587 (617)
Q Consensus 535 ~~L~~l~~~~~~~~~i~~~~~~~~-L~~ll~~~~~~~~~-~~a~~~L~~l~~~~~ 587 (617)
-++.||+..+.+|.-+.....++. ...-+.+.+ ..++ ...+++|.|.|.+..
T Consensus 154 ~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~cFd~~ 207 (353)
T KOG2973|consen 154 PVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNCCFDAK 207 (353)
T ss_pred HHHHHHhhhhhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhhhccch
Confidence 899999999999988877653322 112222333 3444 458999999998544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.1e-06 Score=74.35 Aligned_cols=188 Identities=16% Similarity=0.130 Sum_probs=106.3
Q ss_pred HhCCCceEEEecCCCCccHHH------HhcCCCccEEeccCCCCCCHHH-------HHHHH-----hcCCCcceEEEcCC
Q 007131 100 SRCMNLQKLRFRGAESADSII------HLQARNLRELSGDYCRKITDAT-------LSVIV-----ARHEALESLQLGPD 161 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~-------l~~i~-----~~~~~L~~L~l~~~ 161 (617)
-.||+++.++|+.+.|...++ ..+...|++|.+++|. +...+ +..+. ..-|.|+.+..+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicg-- 165 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG-- 165 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEec--
Confidence 357888888888776543221 1266788888888875 32211 22221 245678888776
Q ss_pred CCCCCCHHHHH---HHHhcCCCCCeeeccCccCCcHHHHHHHH----hcCCCCceEeecCCCCCCHHH-------HhcCc
Q 007131 162 FCERITSDAVK---AIALCCPKLKKLRLSGIRDICGDAINALA----KLCPNLTDIGFLDCLNVDEVA-------LGNVL 227 (617)
Q Consensus 162 ~~~~i~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l~~~~~~~~~~-------l~~~~ 227 (617)
.+.+.+.... .....-.+|+++.+..+ .|..+++..++ .++++|+.|++.+| ..|..+ +...+
T Consensus 166 -rNRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~ 242 (388)
T COG5238 166 -RNRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWN 242 (388)
T ss_pred -cchhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccc
Confidence 2233322222 22232357888888877 67777665554 45788888888887 344322 24456
Q ss_pred CCCeecccCCCCCCHHHHHHHH-----hcCCCCCeEEeccCCCCHH-----HHHHHHh-cCCCCCEEEccCCCCCChh
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVW-----HKLPKLVGLDVSRTDVGPI-----TISRLLT-SSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~-----~~~~~L~~L~l~~~~~~~~-----~l~~~~~-~~~~L~~L~l~~c~~~~~~ 294 (617)
.|+.|.+..| -++..+...+. ...|+|..|...++..... .++.+.+ ..|-|..|.+.+|.+-.+.
T Consensus 243 ~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 243 LLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 7788888887 34444443333 2457777777777543221 2222222 3555666666665544333
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=70.30 Aligned_cols=224 Identities=14% Similarity=0.090 Sum_probs=154.9
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCccc-CCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENAS-IDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.++.. ..++....++..+--+-..+..... +++. ..-...-.-+..+.+|...+.-+...+.++++.++..-
T Consensus 68 ~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~--a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 68 KTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDY--AHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHH--HHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 667777754 3455556666655554322211100 0000 00012233678899999999999988999999988743
Q ss_pred hhHHHHHHhCC-HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGG-INILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 ~~~~~i~~~~~-i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
..+....+... ...|-.++++ .+.+....|+.+|..+...+++|-.++..+|+..++..+.. ...+-++++..+-|+
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s-~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAS-TKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhc-cCcchhHHHHHHHHH
Confidence 32222211111 2334455555 66677888999999999999999999999999999999953 556778999999999
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcc---ccccccCcHHHHHHH
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNS---AVGQEAGALEALVQL 608 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~~~g~~~~L~~l 608 (617)
|-|+.++...+.+...+.++.|...+++...++|..-+++++.|+...++.+...+ ..++..++.+.+-.+
T Consensus 225 WlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L 298 (442)
T KOG2759|consen 225 WLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSL 298 (442)
T ss_pred HHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence 99999999988888888899999999887668999999999999998664332222 445545544444433
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-06 Score=77.79 Aligned_cols=181 Identities=18% Similarity=0.140 Sum_probs=112.9
Q ss_pred HHHHHhCCCceEEEecCCC--CccH--------HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCC
Q 007131 96 ASLASRCMNLQKLRFRGAE--SADS--------IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCER 165 (617)
Q Consensus 96 ~~l~~~~~~L~~L~l~~~~--~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~ 165 (617)
.-+...|.+|+.|.+++.. +..+ +-...+++|+.+.++.|. ...+..+...-|.|+++.+.. +.
T Consensus 175 ~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~---s~ 248 (490)
T KOG1259|consen 175 SHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHN---TT 248 (490)
T ss_pred HHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeec---cc
Confidence 3455567788999987652 1111 111267899999998886 333444444567888888852 11
Q ss_pred CCHHH-H---------------------HHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH
Q 007131 166 ITSDA-V---------------------KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL 223 (617)
Q Consensus 166 i~~~~-l---------------------~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l 223 (617)
+++.. + .........|++|+|+++ .|+ .+..-.+..|.++.|++++|...+-..+
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nL 325 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRTVQNL 325 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceeeehhh
Confidence 11100 0 001112457899999987 443 2333345679999999999965555678
Q ss_pred hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCC-HHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 224 GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG-PITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 224 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
..+++|++|++|+|..-. +..+...+.|+++|.+++|.+. ..++. .+-+|..|++++|.+-.
T Consensus 326 a~L~~L~~LDLS~N~Ls~---~~Gwh~KLGNIKtL~La~N~iE~LSGL~----KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLAE---CVGWHLKLGNIKTLKLAQNKIETLSGLR----KLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhcccceEeecccchhHh---hhhhHhhhcCEeeeehhhhhHhhhhhhH----hhhhheeccccccchhh
Confidence 999999999999974332 2334456778888888887652 23332 24467778888776433
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.7e-05 Score=51.71 Aligned_cols=40 Identities=38% Similarity=0.437 Sum_probs=36.7
Q ss_pred chhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 418 CGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 418 ~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
+.+++.+.+.|++|.|+++|++.++++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4566899999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00051 Score=71.95 Aligned_cols=237 Identities=19% Similarity=0.146 Sum_probs=169.8
Q ss_pred HHhcChHHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCcccCC---------chhHHHH-HhhCCHHHHHHHHhcCCHH
Q 007131 376 WLKQGAGLLLSLMQS--TQEDVQERAATGLATFVVINDENASID---------CGRAEAV-MKDGGIRLLLDLAKSWREG 443 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~---------~~~~~~i-~~~~~i~~Lv~lL~~~~~~ 443 (617)
++..|.+.+++.|+. .+++.-..++.++.++...++..-..+ ....+.+ ...+.|..|+..+...|-.
T Consensus 58 Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~ 137 (970)
T KOG0946|consen 58 VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFH 137 (970)
T ss_pred HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchh
Confidence 467788999999965 578899999999999988775211111 1111222 3568889999999999999
Q ss_pred HHHHHHHHHHHhccc--hhhHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHH
Q 007131 444 LQSEAAKAIANLSVN--AKVAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLI 519 (617)
Q Consensus 444 ~~~~a~~~L~~ls~~--~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll 519 (617)
+|..|+..+.++-.+ .+.+..+.. .-||..|+.+|.+..+.++..|.-.|..|+.+...-++++. .+++..|..++
T Consensus 138 VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII 217 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII 217 (970)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence 999999999998874 456666654 67899999999998888999999999999988877777776 78999999999
Q ss_pred hhcC-CCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhc---CC------ch-hH--HHHHHHHHHHHhcc
Q 007131 520 FKWS-SGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARS---CK------FE-GV--QEQAARALANLAAH 585 (617)
Q Consensus 520 ~~~~-~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~---~~------~~-~~--~~~a~~~L~~l~~~ 585 (617)
+... ....=|+..|+..|.||-.+ ..+...+.+.+.+|.|.++|.. ++ ++ ++ ...|..+++.+..-
T Consensus 218 eeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP 297 (970)
T KOG0946|consen 218 EEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP 297 (970)
T ss_pred HhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC
Confidence 8611 12224788999999999865 4567777888889999987753 22 11 11 22245555555531
Q ss_pred CCCC---CCccccccccCcHHHHHHHhcCC
Q 007131 586 GDSN---SNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 586 ~~~~---~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+... .++..++...+++..|..++-++
T Consensus 298 ~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 298 GNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred CCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 1111 11223455678889998877665
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00053 Score=75.18 Aligned_cols=185 Identities=19% Similarity=0.153 Sum_probs=126.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH--hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM--KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
+.+-.++.+.+...|..|+.+|..++..+.+ .|. -...++.++..|+++.|.+|-.|+.++..++.+
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~----------~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSD----------VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHH----------HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 7777888999999999999999988655433 233 234566777788999999999999999999984
Q ss_pred -hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 459 -AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 459 -~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
++....- ....++.|+..+.+ .++.++.+|+.+|-|++..-.. ..+.- .+.+.+++..|. .++.+.+++.++
T Consensus 421 ~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~--~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 421 QPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLL--QSSKPYVQEQAV 496 (1075)
T ss_pred cHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHh--cCCchhHHHHHH
Confidence 3332222 23346788888877 6779999999999999865321 12211 344454444554 467889999999
Q ss_pred HHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 535 GALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 535 ~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.+++.+|...+. .+.. ...+|.|.+.+++.++++.+.....++-.+
T Consensus 497 taIasvA~AA~~--~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 497 TAIASVADAAQE--KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HHHHHHHHHHhh--hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 999999853332 2222 235778888888765455555544444433
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.8e-05 Score=69.44 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=44.6
Q ss_pred cceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH---hcCcCC
Q 007131 153 LESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL---GNVLSV 229 (617)
Q Consensus 153 L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l---~~~~~L 229 (617)
++.++-+ .+ .|...|+..+-. ++.++.|.+..|..+.|.++..+....|+|+.|++++|+.||+.++ ..+++|
T Consensus 103 IeaVDAs--ds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 103 IEAVDAS--DS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred EEEEecC--Cc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4445543 22 455555555533 5566666666665566666665555556666666666666665443 445555
Q ss_pred CeecccCC
Q 007131 230 RFLSVAGT 237 (617)
Q Consensus 230 ~~L~l~~~ 237 (617)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 55555543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.1e-05 Score=74.79 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=134.7
Q ss_pred cccCCCCCCCCHH-HHHHHHHhCCCceEEEecCCCCccHHHH--hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 81 SSLDLRAHKCDIA-MAASLASRCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 81 ~~l~l~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
+.+|+..+.++++ -+..+.+..|.++.|+++.+.....+-. ...++|+.|.|.+.. ++..........+|.+++|+
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhh
Confidence 3455555566654 3667888889999999987765543322 367789999987765 77777777888888888887
Q ss_pred EcCCC---CCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCe
Q 007131 158 LGPDF---CERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRF 231 (617)
Q Consensus 158 l~~~~---~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~ 231 (617)
++- + --.+.++..+. ..+.+++|+..+|...-......+.+.+|++..+-+..|+.-+. .+...++.+-.
T Consensus 153 mS~-N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 153 MSD-NSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hcc-chhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 751 1 01222332222 24578888888885555556667888899999999999854333 34556677778
Q ss_pred ecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHH-----HHHHHHhcCCCCCEEEcc
Q 007131 232 LSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPI-----TISRLLTSSKSLKVLCAL 286 (617)
Q Consensus 232 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-----~l~~~~~~~~~L~~L~l~ 286 (617)
|+++.+.--++..+.++. .+|.|..|.++.+.+.+. -..-++..+++++.|+-+
T Consensus 229 LnL~~~~idswasvD~Ln-~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALN-GFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhcccccccHHHHHHHc-CCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 888876444566666654 588999999988654332 222345567888888766
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0026 Score=62.52 Aligned_cols=238 Identities=14% Similarity=0.103 Sum_probs=169.7
Q ss_pred CCccchHHHHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCC--chhHHHHHhhCCHHHHHHHHhcCCHHH-
Q 007131 368 NPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASID--CGRAEAVMKDGGIRLLLDLAKSWREGL- 444 (617)
Q Consensus 368 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~~- 444 (617)
.+.-.|.++.-.+++.++.+|.+++.++....+..|..|+-.+-..-+-. +.--..+++.+.++.|+.-+..-+..+
T Consensus 114 ~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 114 MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 34445555566677999999999999999999999999874432221110 111234567888888888776433333
Q ss_pred -----HHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHH
Q 007131 445 -----QSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKAL 515 (617)
Q Consensus 445 -----~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L 515 (617)
...+..++-|+.. .++.+..+++.|-+..|+.-+.. +-+.-..+|..+|+-+-.++ +++.......|+..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 4455667777776 67788888888778887775554 33456778888988887665 588888889999998
Q ss_pred HHHHhh--cCC----CCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCC
Q 007131 516 VDLIFK--WSS----GGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 516 ~~ll~~--~~~----~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
+.-+.. .++ +..++.++...+|+.+-+.+++|..++...|++...-+++.. ...+..|..+|-+....+++.
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFGPEGT 351 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhCCCch
Confidence 877643 122 245788999999999999999999999988888776677763 467778999999988855542
Q ss_pred CCccccccccCcHHHHHHH
Q 007131 590 SNNSAVGQEAGALEALVQL 608 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~l 608 (617)
.+...+++.+|...+..+
T Consensus 352 -~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 352 -PNCNKFVEILGLRTIFPL 369 (536)
T ss_pred -HHHHHHHHHHhHHHHHHH
Confidence 245556677777766653
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=57.52 Aligned_cols=87 Identities=30% Similarity=0.370 Sum_probs=69.7
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 430 IRLLLDLA-KSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 430 i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
|+.|++.| +++++.+|..|+.+|..+- ....++.|+++++++++.++..|+.+|..+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 57899999 7779999999999998542 1134899999999999999999999999883 3
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
..+++.|.+++.+ +.+..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHhhcC
Confidence 4588999999963 445667888888874
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00076 Score=71.49 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=124.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchh----hHHHHHHhCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhc
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAK----VAKAVAEEGGINILAVLARS-------MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~ 497 (617)
.++..+.+|+..+++-+-.+...+.++....+ .+..+.+.=|.+.+-++|+. +....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45677888988888888888888888887443 34567777788999999987 22456788999999999
Q ss_pred CCcchH--HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHH
Q 007131 498 VGEEHK--GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQA 575 (617)
Q Consensus 498 ~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a 575 (617)
..++.. ..++ +-||.|++.+.. .+...+...|..+|..++..++++..+++.|+++.|++.+.+. +...+.|
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~--~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~A 159 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSS--SSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQMEIA 159 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchHHHH
Confidence 987543 5554 589999999974 2235899999999999999999999999999999999998874 5889999
Q ss_pred HHHHHHHhccCC
Q 007131 576 ARALANLAAHGD 587 (617)
Q Consensus 576 ~~~L~~l~~~~~ 587 (617)
..++.+++...+
T Consensus 160 l~lL~~Lls~~~ 171 (543)
T PF05536_consen 160 LNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHhcc
Confidence 999999987433
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00082 Score=73.75 Aligned_cols=175 Identities=18% Similarity=0.076 Sum_probs=121.4
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchh--hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAK--VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKG 504 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~ 504 (617)
..+.+-.+|.+.+...|..|+.+|.-++..-. .+..+ ...++.++..|+++++.|+.+|+.++..++.+- +.+.
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 34556667788999999999999998887433 22222 334788888899999999999999999999764 3333
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.. ..-.++.|+..+. ...++.++..|+.++-|++..-... .+.. .+.+..++.+|..+..+.+++.|+.+|..+
T Consensus 427 ~~-~e~l~~aL~~~ld--~~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 427 KH-HERLPPALIALLD--STQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASV 502 (1075)
T ss_pred HH-HHhccHHHHHHhc--ccCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 32 3346677888886 4677899999999999998643331 1211 133443444444444589999999999999
Q ss_pred hccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 583 AAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+..... +..-.-.-.+|.|...+++.+
T Consensus 503 A~AA~~----~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 503 ADAAQE----KFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHhh----hhHhHHHHHHHHHHHHHhCCC
Confidence 974332 222222456888888888765
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=59.92 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=121.7
Q ss_pred HHHHHHHhCCCceEEEecCCCCccHHHHh------cCCCccEEeccCCCC--CCHHH---H---HHHHhcCCCcceEEEc
Q 007131 94 MAASLASRCMNLQKLRFRGAESADSIIHL------QARNLRELSGDYCRK--ITDAT---L---SVIVARHEALESLQLG 159 (617)
Q Consensus 94 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~~~~--~~~~~---l---~~i~~~~~~L~~L~l~ 159 (617)
++..+.. ...++.++|+|+.+....... .-++|+..+++.... ..|.. + ....-.||+|+..+|+
T Consensus 22 v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 22 VVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 3444444 577888999988876543222 346777777766532 22221 2 2233479999999996
Q ss_pred CCCCCCCCHH---HHHHHHhcCCCCCeeeccCccCCcHH-------HHHHHH-----hcCCCCceEeecCCCCCCH----
Q 007131 160 PDFCERITSD---AVKAIALCCPKLKKLRLSGIRDICGD-------AINALA-----KLCPNLTDIGFLDCLNVDE---- 220 (617)
Q Consensus 160 ~~~~~~i~~~---~l~~l~~~~~~L~~L~l~~~~~i~~~-------~l~~l~-----~~~~~L~~L~l~~~~~~~~---- 220 (617)
- +.++.. .+..+..+...|++|.+++| .+..- .+..++ ...|.|++.....|..-..
T Consensus 101 D---NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 101 D---NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred c---cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 2 233332 23334445678999999987 44321 122222 3358899888877632221
Q ss_pred --HHHhcCcCCCeecccCCCCCCHHHHHHHH----hcCCCCCeEEeccCCCC---HHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 221 --VALGNVLSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDVSRTDVG---PITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 221 --~~l~~~~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
..+.+=.+|+.+.+..| .|.+.++..++ ..|.+|+.||+..|-++ ...+...+...+.|+.|++.+|-..
T Consensus 177 ~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 12333368889888886 67777665554 57899999999997554 4455566667888999999999755
Q ss_pred Chh
Q 007131 292 EEE 294 (617)
Q Consensus 292 ~~~ 294 (617)
+..
T Consensus 256 ~~G 258 (388)
T COG5238 256 NEG 258 (388)
T ss_pred ccc
Confidence 444
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=67.83 Aligned_cols=215 Identities=17% Similarity=0.091 Sum_probs=140.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
|.++++.++.++.+|..|+..+.......... -...-..+++.+..+-.+.++++|...|.++..|-.....
T Consensus 177 pkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--------l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 177 PKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--------LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred HHHHHHHhCCChhHHHHHHhhhhheeecCcHH--------HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 99999999999999999998888664443322 2334556778888888888999999999999998875554
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCC-------------
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGG------------- 526 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~------------- 526 (617)
|-.-.-.+.|+-++..-+..+++|...|+.....+|..+-.+..+.. ...+|.|+.-|.. ++.+
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Y-sd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVY-SDDDIILLKNNEEDESV 327 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCcc-ccccHHHhcCccccccC
Confidence 43333344567777777788999999999999999998855555543 4566666654432 0000
Q ss_pred -----------------------------------------HHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHH--
Q 007131 527 -----------------------------------------DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA-- 563 (617)
Q Consensus 527 -----------------------------------------~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll-- 563 (617)
-.+++-.+.+|--|+. +.....++.++-++
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKE 400 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHH
Confidence 0122222222222221 22234444444444
Q ss_pred --hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 564 --RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 564 --~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+. .-.+++.+.-+|..++...-. -... .=...++.|++++.++.+-||
T Consensus 401 ~L~~~-~W~vrEagvLAlGAIAEGcM~---g~~p-~LpeLip~l~~~L~DKkplVR 451 (885)
T KOG2023|consen 401 HLSSE-EWKVREAGVLALGAIAEGCMQ---GFVP-HLPELIPFLLSLLDDKKPLVR 451 (885)
T ss_pred HcCcc-hhhhhhhhHHHHHHHHHHHhh---hccc-chHHHHHHHHHHhccCcccee
Confidence 343 378999999999999862211 1111 012468899999999988887
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00054 Score=73.93 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=52.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
++.+.+++.++++.+|..|+.++..+....++. +... .++.+.++|.+.++.++..|+.++..+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----------~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----------VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----------HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----------HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 377888888999999999999999986554332 3333 688999999999999999999999999
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00027 Score=76.28 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=132.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-hh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-AK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~~ 460 (617)
..+.+-+.++++.++-.|+.++.+++ . ..+. ...++.+.+++.++++.+|..|+.++..+... ++
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~-----~--------~~~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIR-----T--------PEMA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH------S--------HHHH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhc-----c--------cchh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH
Confidence 66777788899999999999999985 1 1233 23578899999999999999999999998873 33
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
. +... .++.+.++|.+.++.++..|+.++..+ ...+... .+. ...+..|..++ ...++-++..++.++..
T Consensus 148 ~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~-~~~~~~L~~~l---~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 148 L---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-SLI-PKLIRILCQLL---SDPDPWLQIKILRLLRR 218 (526)
T ss_dssp C---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-THH-HHHHHHHHHHH---TCCSHHHHHHHHHHHTT
T ss_pred H---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-hhH-HHHHHHhhhcc---cccchHHHHHHHHHHHh
Confidence 2 1111 378899999999999999999999999 2111111 111 12334444444 35677788888888888
Q ss_pred hccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 540 l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++........- ...++.+..++.+.+ +.+...|+.++.++.... . .-..+++.|+.++.++++
T Consensus 219 ~~~~~~~~~~~--~~~i~~l~~~l~s~~-~~V~~e~~~~i~~l~~~~-------~--~~~~~~~~L~~lL~s~~~ 281 (526)
T PF01602_consen 219 YAPMEPEDADK--NRIIEPLLNLLQSSS-PSVVYEAIRLIIKLSPSP-------E--LLQKAINPLIKLLSSSDP 281 (526)
T ss_dssp STSSSHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSH-------H--HHHHHHHHHHHHHTSSSH
T ss_pred cccCChhhhhH--HHHHHHHHHHhhccc-cHHHHHHHHHHHHhhcch-------H--HHHhhHHHHHHHhhcccc
Confidence 77544332211 345566677776653 677777777777775311 1 123567777777776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00037 Score=54.58 Aligned_cols=87 Identities=31% Similarity=0.274 Sum_probs=70.4
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
|+.|++.| +++++.++..|+.+|.++.. ..+++.|++++. ++++.++..|+.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~i--------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLK---DEDPMVRRAAARALGRI--------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHT---SSSHHHHHHHHHHHHCC---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHc---CCCHHHHHHHHHHHHHh---------
Confidence 67899998 77899999999999995521 145889999994 58899999999999987
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
.....++.|.+++.++++..++..|+.+|.
T Consensus 59 -~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 -GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245588999999988766778999988874
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.4e-05 Score=65.71 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=71.0
Q ss_pred CccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCC
Q 007131 126 NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCP 205 (617)
Q Consensus 126 ~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 205 (617)
.++.++-+++. |...++..+-. ++.|+.|.+. .|.++.|.++..+....++|+.|++++|+.||+.++..+.+ ++
T Consensus 102 ~IeaVDAsds~-I~~eGle~L~~-l~~i~~l~l~--~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEGLEHLRD-LRSIKSLSLA--NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCch-HHHHHHHHHhc-cchhhhheec--cccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hh
Confidence 34566666665 77777777654 7889999996 59899999999998888999999999999999999887774 58
Q ss_pred CCceEeecCCCCCCH
Q 007131 206 NLTDIGFLDCLNVDE 220 (617)
Q Consensus 206 ~L~~L~l~~~~~~~~ 220 (617)
+|+.|.+.+-+.+..
T Consensus 177 nLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHHHHhcCchhhhc
Confidence 999998887554443
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00022 Score=46.43 Aligned_cols=40 Identities=38% Similarity=0.421 Sum_probs=36.6
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
++++..+.+.|+++.|+++|.+.++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999974
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=1.4e-05 Score=82.95 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=89.0
Q ss_pred HHHHHHhCCCceEEEecCCCC---ccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC-----------
Q 007131 95 AASLASRCMNLQKLRFRGAES---ADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP----------- 160 (617)
Q Consensus 95 ~~~l~~~~~~L~~L~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~----------- 160 (617)
++.+....+.++.|.+-.... ..++..+.++.|+.|.|.+|..-+..++..+-. +|++|--..
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~Sl~Al~~v~as 152 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNSLDALRHVFAS 152 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhccHHHHHHHHHH
Confidence 455555556666666654322 233444578999999999997444555544432 223322110
Q ss_pred ---CCCCCCCHH-------------HHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---H
Q 007131 161 ---DFCERITSD-------------AVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---V 221 (617)
Q Consensus 161 ---~~~~~i~~~-------------~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~ 221 (617)
..|+..... .+..-.+-+|.|++|+|+++ ++++ +. ..+.|++|++|||++| .+.. .
T Consensus 153 cggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~--v~-~Lr~l~~LkhLDlsyN-~L~~vp~l 227 (1096)
T KOG1859|consen 153 CGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTK--VD-NLRRLPKLKHLDLSYN-CLRHVPQL 227 (1096)
T ss_pred hccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhh--hH-HHHhcccccccccccc-hhcccccc
Confidence 001100000 01111122355666666665 3333 12 2234566666666665 2222 2
Q ss_pred HHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 222 ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 222 ~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+..+|+ |+.|.+++|..-+-.++ .++.+|+.||+++|-+.+..=-..+..+..|+.|+|.+||.-
T Consensus 228 ~~~gc~-L~~L~lrnN~l~tL~gi----e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 228 SMVGCK-LQLLNLRNNALTTLRGI----ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhhhh-heeeeecccHHHhhhhH----HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 233344 66666666532222222 245667777777765433222223334556666666666643
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.48 E-value=2.8e-06 Score=86.33 Aligned_cols=194 Identities=17% Similarity=0.165 Sum_probs=91.1
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCcc--HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESAD--SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
..+|++.++... +... ..+..++-.|+|+++.... .....++..|-.|+|+++. + ..+..-...+.+|++|+|
T Consensus 106 t~lDLShNqL~E-vP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-L--e~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 106 TILDLSHNQLRE-VPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-L--EMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred eeeecchhhhhh-cchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-h--hhcCHHHHHHhhhhhhhc
Confidence 455555544322 2222 2344778889999875432 1122245666677777665 2 122223334556777777
Q ss_pred cCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC-CCCHHHHhcCcCCCeecccCC
Q 007131 159 GPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL-NVDEVALGNVLSVRFLSVAGT 237 (617)
Q Consensus 159 ~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~ 237 (617)
+. +-+....+..+.. +.+|..|++++... +-..+..-...+.||..++++.|. .+-++++-.+++|+.|++|+|
T Consensus 181 s~---NPL~hfQLrQLPs-mtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 181 SN---NPLNHFQLRQLPS-MTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred CC---ChhhHHHHhcCcc-chhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 42 2232323333222 34555556665421 111111112234566667776652 122356666777777777765
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 238 SNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 238 ~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
.|+.-.+. .....+|++|+++.|+++ .++..+-.+++|+.|.+.++.
T Consensus 256 -~iteL~~~--~~~W~~lEtLNlSrNQLt--~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 256 -KITELNMT--EGEWENLETLNLSRNQLT--VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred -ceeeeecc--HHHHhhhhhhccccchhc--cchHHHhhhHHHHHHHhccCc
Confidence 34321110 011234555555555432 122223334555555544443
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=61.20 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=108.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
...+++++.+.+|.++..|+.-+..++.. ..+..... ...++.+.++++...+ .+.|+.+|.|++..+..+..+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 35788999999999999999999888877 33333322 2237888899887666 77889999999999999999988
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-------hCCHHHHHHHHhcCCch-hHHHHHHHHHH
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-------AGGVHALVMLARSCKFE-GVQEQAARALA 580 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-------~~~~~~L~~ll~~~~~~-~~~~~a~~~L~ 580 (617)
. .+..++..+- +....+....+.+|.||+..+.....+.. .|.+.....+..++... .-....+-++.
T Consensus 82 ~-~~k~l~~~~~---~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 82 D-LLKVLMDMLT---DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred H-HHHHHHHHhc---CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 7 6666777774 35567889999999999988776444432 22333333344443222 23344677888
Q ss_pred HHhccCCCC
Q 007131 581 NLAAHGDSN 589 (617)
Q Consensus 581 ~l~~~~~~~ 589 (617)
||+....++
T Consensus 158 nls~~~~gR 166 (353)
T KOG2973|consen 158 NLSQFEAGR 166 (353)
T ss_pred HHhhhhhhh
Confidence 888766664
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.011 Score=59.62 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=146.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~ 459 (617)
+.+..++-+++.+++..|.++++.+....+.- +.+...+.--.+++-|... +...|++|...++.+..-+
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l--------~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~ 99 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEESL--------QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK 99 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH--------HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence 44444554555899999999999875443222 4566666666667777654 4567889999998887654
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
.+...+ -.|.+..++.+....++..+..|..+|..++.. +=..+.+.||+..|++.+.+ +..++.+..+.++..
T Consensus 100 ~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d---~~~~~~~~l~~~lL~ 173 (371)
T PF14664_consen 100 KGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALID---GSFSISESLLDTLLY 173 (371)
T ss_pred CCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHh---ccHhHHHHHHHHHHH
Confidence 433322 234478899999999999999999999999965 23456678999999999964 444588888899988
Q ss_pred hccCCCchHHHHHhCCHHHHHHHHhcC------Cch--hHHHHHHHHHHHHhccCCCCCCccccccc-cCcHHHHHHHhc
Q 007131 540 LAADDKCSMEVALAGGVHALVMLARSC------KFE--GVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQLTR 610 (617)
Q Consensus 540 l~~~~~~~~~i~~~~~~~~L~~ll~~~------~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~g~~~~L~~ll~ 610 (617)
+-..++.|.-+...--+..++.-+.+. ++. +....+..++..+-..=+| ......+ ..+++.|++.++
T Consensus 174 lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G---Ll~l~~~~~~~lksLv~~L~ 250 (371)
T PF14664_consen 174 LLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG---LLYLSMNDFRGLKSLVDSLR 250 (371)
T ss_pred HhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc---eeeeecCCchHHHHHHHHHc
Confidence 888777777666544456555533221 112 2334455555554443333 2222222 268999999999
Q ss_pred CCCCCCC
Q 007131 611 SPHEGVR 617 (617)
Q Consensus 611 ~~~~~vr 617 (617)
.+++++|
T Consensus 251 ~p~~~ir 257 (371)
T PF14664_consen 251 LPNPEIR 257 (371)
T ss_pred CCCHHHH
Confidence 8887664
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0017 Score=65.28 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=140.4
Q ss_pred chHHHHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHH
Q 007131 372 LDDFWLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAK 450 (617)
Q Consensus 372 ~~~~~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~ 450 (617)
+..++.+.++ ..++.++-+.+..+|.+..|+++.+..+++++-++ .....-++..++++..++...+|.....
T Consensus 465 L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf------~~Lakig~~kvl~~~NDpc~~vq~q~lQ 538 (743)
T COG5369 465 LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF------KFLAKIGVEKVLSYTNDPCFKVQHQVLQ 538 (743)
T ss_pred hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh------hhHHhcCHHHHHHHhcCcccccHHHHHH
Confidence 4455567777 88999998888899999999999999998887443 5667778999999999999999999999
Q ss_pred HHHHhccc----hhhHHHHHHhCC----HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hHHHHHh-cCChHHHHHHHh
Q 007131 451 AIANLSVN----AKVAKAVAEEGG----INILAVLARSMNRLVAEEAAGGLWNLSVGEE-HKGAIAD-AGGVKALVDLIF 520 (617)
Q Consensus 451 ~L~~ls~~----~~~~~~i~~~~~----i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~-~g~i~~L~~ll~ 520 (617)
+|+|+..+ ++.++.+.+..- .+.|++.+...+|--.+..+-.|.++|..++ .+..+.+ ...+..+...|.
T Consensus 539 ilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 539 ILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 99999873 333443333322 3456666666676555556777777776554 4444443 334443333332
Q ss_pred h---------c-----------------------------------------CCCCHHHHHHHHHHHHHhccCCCc----
Q 007131 521 K---------W-----------------------------------------SSGGDGVLERAAGALANLAADDKC---- 546 (617)
Q Consensus 521 ~---------~-----------------------------------------~~~~~~~~~~a~~~L~~l~~~~~~---- 546 (617)
. + .+.+.+.-.+..|...|+....++
T Consensus 619 e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt 698 (743)
T COG5369 619 EFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT 698 (743)
T ss_pred HHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc
Confidence 1 0 002344556666777776643332
Q ss_pred -----hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 547 -----SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 547 -----~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
|.++..+.|+...+..+...++..+++.+-.+|.|+-
T Consensus 699 ratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 699 RATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred hhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 5667777777666666665556899999999999873
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00012 Score=80.07 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
++|+.|++++| .++.-. ...++|+.|++++|. ++. + .....+|+.|++++|.++ .++..+.++++|+.|+
T Consensus 382 ~~L~~LdLs~N-~Lt~LP-~l~s~L~~LdLS~N~-Lss--I---P~l~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLP-VLPSELKELMVSGNR-LTS--L---PMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVN 451 (788)
T ss_pred cccceEEecCC-cccCCC-CcccCCCEEEccCCc-CCC--C---CcchhhhhhhhhccCccc--ccChHHhhccCCCeEE
Confidence 57888888877 344210 123578888888873 431 1 122356888999988876 3566667799999999
Q ss_pred ccCCCCCCh
Q 007131 285 ALNCPVLEE 293 (617)
Q Consensus 285 l~~c~~~~~ 293 (617)
+++|+....
T Consensus 452 Ls~N~Ls~~ 460 (788)
T PRK15387 452 LEGNPLSER 460 (788)
T ss_pred CCCCCCCch
Confidence 999986543
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00027 Score=77.26 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHH
Q 007131 442 EGLQSEAAKAIANLSVNAKVAKAVAE 467 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~~~~~~~i~~ 467 (617)
++.+......|..++.+++.|+.+..
T Consensus 546 ~~~~~~V~~~l~~~~~~~~LR~~~F~ 571 (788)
T PRK15387 546 AGFKAQISSWLAQLAEDEALRANTFA 571 (788)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55677777788888888877776654
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0008 Score=43.73 Aligned_cols=38 Identities=42% Similarity=0.526 Sum_probs=34.6
Q ss_pred hHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 420 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
.+..+.+.|+++.|++++.+.+++++..|+++|+||+.
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 45688899999999999998899999999999999974
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=6.8e-05 Score=80.21 Aligned_cols=159 Identities=17% Similarity=0.156 Sum_probs=98.4
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
+.|+.|.+.++. ++|..+. ++.++++|+.|+|++-+-..+++..+. .++.|++|+|+|+ .++. +..-...|
T Consensus 359 ~~Lq~LylanN~-Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGN-kL~~--Lp~tva~~ 429 (1081)
T KOG0618|consen 359 AALQELYLANNH-LTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGN-KLTT--LPDTVANL 429 (1081)
T ss_pred HHHHHHHHhcCc-ccccchh-hhccccceeeeeecccccccCCHHHHh----chHHhHHHhcccc-hhhh--hhHHHHhh
Confidence 445556666654 6665444 445678899999963111334444433 3577889999988 4433 22233357
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC---CCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD---VGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~---~~~~~l~~~~~~~~~L~ 281 (617)
+.|++|...+|....-..+..++.|+.++++.| +++...+...... |+|++||++||- ++...+ ..+.++.
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l----~~l~~l~ 503 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTL----KVLKSLS 503 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCC-cccceeeccCCcccccchhhh----HHhhhhh
Confidence 888888888875444457788999999999886 6765555443322 899999999963 333333 2355555
Q ss_pred EEEccCCCCCChhHHHHH
Q 007131 282 VLCALNCPVLEEENNISA 299 (617)
Q Consensus 282 ~L~l~~c~~~~~~~~~~~ 299 (617)
..++.-+ ...+....++
T Consensus 504 ~~~i~~~-~~~d~~~n~~ 520 (1081)
T KOG0618|consen 504 QMDITLN-NTPDGNVNAF 520 (1081)
T ss_pred heecccC-CCCcccccee
Confidence 5555544 3444443433
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00031 Score=77.12 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=32.8
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++|++++|. ++. +.. .-+++|+.|++++|.++. ++..+ .++|+.|++++|...
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQITV--LPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcCC
Confidence 567777777762 321 111 123678888888877652 22222 357888888887654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.03 Score=57.09 Aligned_cols=117 Identities=15% Similarity=-0.018 Sum_probs=78.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++.+...++.++..++.+|..+ ...+..+.|+.+|++.++.++..++.++..
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i------------------~~~~a~~~L~~~L~~~~p~vR~aal~al~~------- 143 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWL------------------GGRQAEPWLEPLLAASEPPGRAIGLAALGA------- 143 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcC------------------CchHHHHHHHHHhcCCChHHHHHHHHHHHh-------
Confidence 5555566555555666666666532 122344667777777777777666655554
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
......+.+..+|++.++.++..|+.+|..+-.. ..++.|...+ .+.++.++..|++++..+
T Consensus 144 ----r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al---~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 144 ----HRHDPGPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYL---RDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHH---cCCCHHHHHHHHHHHHHc
Confidence 1122356788888888899999999988877543 4667777777 467888998888888666
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00082 Score=47.10 Aligned_cols=55 Identities=22% Similarity=0.066 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
+.+|..|+++|++++........-.....++.|+.+|++++++|+..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5689999999999987554444434566799999999999999999999999876
|
... |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.014 Score=64.04 Aligned_cols=173 Identities=18% Similarity=0.119 Sum_probs=116.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+..++++.+++.++++-+...+.+.+....+. .+ -++..|.+=+.++|+.+|..|.++++.+-... .
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel---------al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-i 137 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEK---------AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-V 137 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccChHH---------HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-H
Confidence 67778888889999888888888876443321 11 24567777778889999999999888764422 2
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
-+. .++.+.+.|.+.++-|++.|+.++..+-.... ..+.+.|.++.|.++| .+.++.++.+|+.+|..+.
T Consensus 138 ~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL---~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 138 LEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELL---NDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHh---cCCCccHHHHHHHHHHHHH
Confidence 222 25667788888999999999999999854322 2334567888899988 4588899999999999998
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHH
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL 579 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L 579 (617)
..++.+..+ ..+.+..|+..+...+ +..+.....+|
T Consensus 208 ~~~~~~l~l-~~~~~~~Ll~~L~e~~-EW~Qi~IL~lL 243 (746)
T PTZ00429 208 DYGSEKIES-SNEWVNRLVYHLPECN-EWGQLYILELL 243 (746)
T ss_pred HhCchhhHH-HHHHHHHHHHHhhcCC-hHHHHHHHHHH
Confidence 654432222 2233444454444332 44444444444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00021 Score=66.54 Aligned_cols=133 Identities=22% Similarity=0.228 Sum_probs=90.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH-hcCcC
Q 007131 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL-GNVLS 228 (617)
Q Consensus 150 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l-~~~~~ 228 (617)
...|+++||++ . .|+ .+..-..-.|.++.|+++++ .+.. +..+ ...++|..||+++|..-.-++. ..+-+
T Consensus 283 Wq~LtelDLS~--N-~I~--~iDESvKL~Pkir~L~lS~N-~i~~--v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSG--N-LIT--QIDESVKLAPKLRRLILSQN-RIRT--VQNL-AELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccc--c-chh--hhhhhhhhccceeEEecccc-ceee--ehhh-hhcccceEeecccchhHhhhhhHhhhcC
Confidence 45789999963 2 332 23343445799999999988 4432 2222 2568999999999843333565 46789
Q ss_pred CCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++.|.+++|.--+-.++. .+-+|..||+.+|++..-.-..-+.++|.|+++.+.+||......
T Consensus 354 IKtL~La~N~iE~LSGL~----KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 354 IKTLKLAQNKIETLSGLR----KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred EeeeehhhhhHhhhhhhH----hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 999999987322223333 345699999999987543334556789999999999998665443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.037 Score=56.43 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=128.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCH-HHHHHHHHH---HHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE-GLQSEAAKA---IANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~a~~~---L~~ls~ 457 (617)
+.++.-+++.++.+|..|+.-+.......... ....-+|.+..+++.+.+..+ .+++.|..+ +..+..
T Consensus 253 ~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~--------~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 253 NVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD--------LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred hhccccccCCcHHHHHHHHHHHHHHhcCCCcc--------hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 77788888899999999988888776665544 244567777888888876644 344433322 333333
Q ss_pred chhhHHHHHHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
.+..++. .+.|. ++.+.+.+.++..+++..+..-+..|=....++.........+.|+.-| ++.++.+...++..
T Consensus 325 ~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL---sd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 325 SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL---SDRSDEVVLLALSL 400 (675)
T ss_pred hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh---cCchhHHHHHHHHH
Confidence 3333333 44444 6888888988999999999888888876666676666677888999999 45788999999999
Q ss_pred HHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 537 LANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 537 L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++++|..++...- -.++..|.+++...+ .-+...+..+++.||.
T Consensus 401 la~i~~s~~~~~~---~~fl~sLL~~f~e~~-~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 401 LASICSSSNSPNL---RKFLLSLLEMFKEDT-KLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHhcCcccccH---HHHHHHHHHHHhhhh-HHHHhhhhHHHHHHHH
Confidence 9999987665411 123344555555543 4555566667776664
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.025 Score=62.15 Aligned_cols=178 Identities=15% Similarity=0.022 Sum_probs=122.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+.+-+.+.++.+|-.|++.+.++- . ..+. .-.++.+.+.+.+.++-+|..|+-++.++-...+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir-~------------~~i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p- 172 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIR-V------------SSVL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM- 172 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC-c------------HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-
Confidence 66677777889999999988888752 1 1122 2345677888888999999999999999866333
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
+.+.+.|-++.|.++|.+.++.|+.+|+.+|..+.........+ ..+.+..|+..+. .-++-.+...+.+|....
T Consensus 173 -elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~---e~~EW~Qi~IL~lL~~y~ 247 (746)
T PTZ00429 173 -QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLP---ECNEWGQLYILELLAAQR 247 (746)
T ss_pred -ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhh---cCChHHHHHHHHHHHhcC
Confidence 23444566788999999999999999999999997543222222 2345566666663 344555666666664422
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+...... ...+..+...+++.+ +.|...|+.++.+++.
T Consensus 248 --P~~~~e~--~~il~~l~~~Lq~~N-~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 248 --PSDKESA--ETLLTRVLPRMSHQN-PAVVMGAIKVVANLAS 285 (746)
T ss_pred --CCCcHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhcC
Confidence 2222221 235566777777875 8999999999999975
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.016 Score=49.65 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=100.6
Q ss_pred HHHHHHhCCHHHHHHHHhcCC------HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSMN------RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~------~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
...+...||++.|++++.++. .++..+++.+...|-..............|.+++..+.. +..+..+...|+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHHHHHHH
Confidence 456788999999999999865 377888999999988776666677777788888888864 4446789999999
Q ss_pred HHHHhccCCCchHHHHHhCC-HHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 536 ALANLAADDKCSMEVALAGG-VHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~~~-~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
.|-++..+++.....+.... ++.|+..|+.++ .+++.+|.+.+-.|-..++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~-~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSN-QEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCC
Confidence 99999998888555555444 899999999875 8999999999998877554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0016 Score=63.41 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=64.4
Q ss_pred HHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCC-------HHHHHHH--------------HhcCCCCC
Q 007131 200 LAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMK-------WGVVSQV--------------WHKLPKLV 256 (617)
Q Consensus 200 l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~-------~~~l~~l--------------~~~~~~L~ 256 (617)
+...+++|..|++++| .+.+ ..+..+..|+.|+++.+..-. -+.+..+ ..+..+|.
T Consensus 430 ~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 3455689999999987 3444 344566779999998872110 0111111 13567899
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.||+..|++ ..++.++++|.+|++|.++++++....
T Consensus 509 tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 509 TLDLQNNDL--QQIPPILGNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred eeccCCCch--hhCChhhccccceeEEEecCCccCCCH
Confidence 999999864 677889999999999999999977443
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.089 Score=52.15 Aligned_cols=197 Identities=15% Similarity=0.125 Sum_probs=139.0
Q ss_pred HhcCh-HHHHHhhccCCHHH------HHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHH
Q 007131 377 LKQGA-GLLLSLMQSTQEDV------QERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSE 447 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~------~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~ 447 (617)
.+.++ +.|++-+..-++.+ ..+++..+-|++.. ++.....+++.|.+..|+.-+... -..-...
T Consensus 173 vdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~-------r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Y 245 (536)
T KOG2734|consen 173 VDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEV-------RPAICTEIVEQGLLSWLLKRLKGKAAFDANKQY 245 (536)
T ss_pred HhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhc-------cHHHHHHHHHhhHHHHHHHHHhcccCcchhHHH
Confidence 34444 66776664323222 34556666666533 344556778888877777755432 3455778
Q ss_pred HHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhc---C------CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 448 AAKAIANLSVN-AKVAKAVAEEGGINILAVLARS---M------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 448 a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~---~------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
|..+++.+-.+ .+++..+...+||..+++-+.- . ..+..++.-.+|+.+-..++++..+....|++...-
T Consensus 246 asEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~L 325 (536)
T KOG2734|consen 246 ASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNL 325 (536)
T ss_pred HHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHH
Confidence 88888888885 4488889999999999887752 2 236778888888888889999999999999988766
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCC---chHHHHHhCCHHHHHHHHh-c--------CCchhHHHHHHHHHHHHhc
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDK---CSMEVALAGGVHALVMLAR-S--------CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~i~~~~~~~~L~~ll~-~--------~~~~~~~~~a~~~L~~l~~ 584 (617)
+++ .....+..++++|-....+++ +...+++..|...++.++- . ...++..++.+..|+.+-.
T Consensus 326 mlr----~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 326 MLR----EKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHH----HHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 664 244567788999998887776 4778888888888777443 2 2235778888888887754
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=49.44 Aligned_cols=65 Identities=31% Similarity=0.379 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhcCC-cchHHHHHh
Q 007131 444 LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS--MNRLVAEEAAGGLWNLSVG-EEHKGAIAD 508 (617)
Q Consensus 444 ~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~nL~~~-~~~~~~i~~ 508 (617)
++...+++|+|+++ ++++++.+.+.||++.++....- .+|-+++.|..++.||+.+ ++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45677899999999 67899999999999999998653 6889999999999999965 478877765
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.017 Score=58.89 Aligned_cols=148 Identities=18% Similarity=0.054 Sum_probs=107.8
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+.++..+. .+++++...++.++... . ...++..|++.|.+.++.++..++.+|..
T Consensus 57 ~~L~~aL~~d~~~ev~~~aa~al~~~---~---------------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~------ 112 (410)
T TIGR02270 57 ELLVSALAEADEPGRVACAALALLAQ---E---------------DALDLRSVLAVLQAGPEGLCAGIQAALGW------ 112 (410)
T ss_pred HHHHHHHhhCCChhHHHHHHHHHhcc---C---------------ChHHHHHHHHHhcCCCHHHHHHHHHHHhc------
Confidence 77888884 45667666555444421 1 11137899999999999999999999974
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+...+..+.|+.+|++.++.++..++.++.... ....+.+..+|. +.++.++..|+++|..+
T Consensus 113 ----i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~---d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 113 ----LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALT---HEDALVRAAALRALGEL 174 (410)
T ss_pred ----CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhc---CCCHHHHHHHHHHHHhh
Confidence 333445788999999999999988887776621 235678888894 58889999999999987
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
-. ...++.|...+.+.+ +.|+..|++++..+
T Consensus 175 ~~----------~~a~~~L~~al~d~~-~~VR~aA~~al~~l 205 (410)
T TIGR02270 175 PR----------RLSESTLRLYLRDSD-PEVRFAALEAGLLA 205 (410)
T ss_pred cc----------ccchHHHHHHHcCCC-HHHHHHHHHHHHHc
Confidence 42 345566776776664 88998888887655
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0071 Score=60.99 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=114.4
Q ss_pred HHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCC
Q 007131 447 EAAKAIANLSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSS 524 (617)
Q Consensus 447 ~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~ 524 (617)
.++..|..++.. .-.|..+.++..++.|+++|..++..+.--+..++.|+... +..+..+.+.|.+..|+.++. +
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~---s 484 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM---S 484 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh---c
Confidence 334445555543 23577788888899999999886666667788899998754 467899999999999999995 4
Q ss_pred CCHHHHHHHHHHHHHhccCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccccccc
Q 007131 525 GGDGVLERAAGALANLAADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (617)
.+..++.+..|+++.+-.+.+. +-+....-++..++.+..+++ -.+++.+..+|+|++.++..+...+.+..++
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~ 560 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKA 560 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEec
Confidence 5778999999999999987766 445567778899999988876 7999999999999998665543344444443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00026 Score=65.36 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=73.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
.+.++|++++|. ++|.. +...+|.||.|.|+ .+.|+. +..+. .|.+|++|.|..+ .|.+-.-....++.
T Consensus 19 ~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLS---vNkIss--L~pl~-rCtrLkElYLRkN-~I~sldEL~YLknl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLS---VNKISS--LAPLQ-RCTRLKELYLRKN-CIESLDELEYLKNL 87 (388)
T ss_pred HHhhhhcccCCC-ccHHH---HHHhcccceeEEee---cccccc--chhHH-HHHHHHHHHHHhc-ccccHHHHHHHhcC
Confidence 466778888887 87754 34568899999996 335543 44444 4899999999876 55443222334578
Q ss_pred CCCceEeecCCCCCCHH-------HHhcCcCCCeecccCCCCCCHHHHHHH
Q 007131 205 PNLTDIGFLDCLNVDEV-------ALGNVLSVRFLSVAGTSNMKWGVVSQV 248 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~-------~l~~~~~L~~L~l~~~~~i~~~~l~~l 248 (617)
|+|+.|.|..|+..... .+..+|+|+.|+ +..++.+.+..-
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~A 135 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEEA 135 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHHH
Confidence 99999999887655543 357788888874 345666665543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00062 Score=74.83 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
++|++|++++| .++. +.. ..+++|+.|++++| .++.-.-.-.++|++|++++|. ++.- -..+ .+.|+.|
T Consensus 325 ~sL~~L~Ls~N-~Lt~--LP~--~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~-Lt~L-P~~l---~~sL~~L 393 (754)
T PRK15370 325 PGLKTLEAGEN-ALTS--LPA--SLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNA-LTNL-PENL---PAALQIM 393 (754)
T ss_pred ccceeccccCC-cccc--CCh--hhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCc-CCCC-CHhH---HHHHHHH
Confidence 56777777776 3332 111 12368888888887 3442110113678888888873 3310 0111 1257888
Q ss_pred EeccCCCC--HHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 259 DVSRTDVG--PITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 259 ~l~~~~~~--~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++++|.++ +..++.+...++++..|++.+|++..
T Consensus 394 dLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 394 QASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 88887664 23455666667889999999998653
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.044 Score=55.26 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~ 470 (617)
.+...+++|+..++.+....... .-...|.+.+++.+..+.++..+..|..+|+.++..++ +.+...||
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~---------~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG 148 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGP---------KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGG 148 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCc---------ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCC
Confidence 45667889999998876543221 22456788999999999999999999999999998432 27778999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhc----CCCCH--HHHHHHHHHHHHh-ccC
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKW----SSGGD--GVLERAAGALANL-AAD 543 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~----~~~~~--~~~~~a~~~L~~l-~~~ 543 (617)
+..|++.+.++..++.+..+.++-.+-..+..|.-+...--++.++.-..+. ..++. +-...+..++..+ -.+
T Consensus 149 ~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW 228 (371)
T PF14664_consen 149 IRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW 228 (371)
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC
Confidence 9999999988766788899999999999988888776644566666655442 11222 2233333333333 333
Q ss_pred CCchHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 544 DKCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 544 ~~~~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+.--.--.+ ..+++.|+..|+.+. ++++.....++..+
T Consensus 229 ~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~dl 267 (371)
T PF14664_consen 229 PGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFDL 267 (371)
T ss_pred CceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 322111111 145677777777664 66777777666643
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.019 Score=62.42 Aligned_cols=141 Identities=19% Similarity=0.174 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcc-chhhHHHHH----HhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 444 LQSEAAKAIANLSV-NAKVAKAVA----EEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 444 ~~~~a~~~L~~ls~-~~~~~~~i~----~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
-...+..+|.|+.. +++....+. -.|-++.+...+.. .++.++..|+.++.-++.+.+.-..+.+.|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45678889999887 665544443 25567888888776 6778999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
+|. ..+..++.++.+|..|+++++-.....+.|++..+..++-..+++..+.+|+..+..|..+.-.
T Consensus 1821 lLH----S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1821 LLH----SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred HHh----cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcccc
Confidence 994 4668899999999999999998888888899999988887777799999999999999986533
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.015 Score=54.98 Aligned_cols=184 Identities=16% Similarity=0.077 Sum_probs=107.8
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh--hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK--DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVA 466 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~ 466 (617)
.+.+.+.+..|+..|..+.... ... .....+.+ ...+..+...+.+.+..+...|+.++..++..-...-.-.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~-~~~----~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGN-APE----DFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH--B---------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcC-Ccc----ccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 4577888999999999987655 111 11122221 1455677777777778899999999999997332221111
Q ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-
Q 007131 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK- 545 (617)
Q Consensus 467 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~- 545 (617)
-...++.|++.+.+...-+++.|..+|..+...-..-..+. ++.+...+ .+.++.++..++..+..+...-+
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~---~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGL---KSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHT---T-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHH---hCCCHHHHHHHHHHHHHHHHHccc
Confidence 12247888888888888899999999999886533111110 23333444 46788999999999998875333
Q ss_pred chHHHHH----hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 546 CSMEVAL----AGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 546 ~~~~i~~----~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
....+.. ...++.+..++.+++ +++++.|-.+++.+...
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDAD-PEVREAARECLWALYSH 207 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHH
Confidence 1111111 235667777888875 89999999999999764
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00013 Score=67.09 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEE
Q 007131 204 CPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVL 283 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 283 (617)
..+|+.|.+.++...+-..+..+++|++|.++.+......++..++..||+|++|++++|.+.+-.-..-+..+++|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 45666777777755555777888999999999875555667788888899999999999987642222334458889999
Q ss_pred EccCCCCCC
Q 007131 284 CALNCPVLE 292 (617)
Q Consensus 284 ~l~~c~~~~ 292 (617)
++.+|....
T Consensus 122 dl~n~~~~~ 130 (260)
T KOG2739|consen 122 DLFNCSVTN 130 (260)
T ss_pred hcccCCccc
Confidence 999997554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00059 Score=63.07 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=74.3
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
.+.+.|+..|| .++|- .|+..+|.|+.|.|+-|..-+-..+..|++|++|.+..| .|.+-.=.+-..++|+|+.|
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 46788899999 78773 356788999999999885445578899999999999886 45433323334789999999
Q ss_pred EeccCC----CCHHHHHHHHhcCCCCCEEE
Q 007131 259 DVSRTD----VGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 259 ~l~~~~----~~~~~l~~~~~~~~~L~~L~ 284 (617)
-|..|. .+..--...+..+|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888853 23333345677799999886
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.03 Score=56.35 Aligned_cols=152 Identities=25% Similarity=0.262 Sum_probs=105.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+..+++.+.+.+..++..|...+.. +....+++.+..++.+.++.+|..|+.+|..+
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~------------------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----- 101 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGE------------------LGSEEAVPLLRELLSDEDPRVRDAAADALGEL----- 101 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh------------------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-----
Confidence 3778888888888888888888654 33445778999999999999999999866543
Q ss_pred hHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCH------------
Q 007131 461 VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD------------ 527 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~------------ 527 (617)
....+++.++.++.. .+..++..|+.+|..+-.. .++.+++..+.+ ...
T Consensus 102 -----~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~---~~~~~a~~~~~~~~~ 163 (335)
T COG1413 102 -----GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQD---EDSGSAAAALDAALL 163 (335)
T ss_pred -----CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhcc---chhhhhhhhccchHH
Confidence 223357888999984 8889999999999888543 347777777753 221
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.++..+...+..+ .....++.+..++.+.. ..++..|..+|..+..
T Consensus 164 ~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~ 209 (335)
T COG1413 164 DVRAAAAEALGEL----------GDPEAIPLLIELLEDED-ADVRRAAASALGQLGS 209 (335)
T ss_pred HHHHHHHHHHHHc----------CChhhhHHHHHHHhCch-HHHHHHHHHHHHHhhc
Confidence 2333333333332 22334566777777664 6788888888887764
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.036 Score=57.69 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=114.3
Q ss_pred HHHHhhCCHHHHHHHH----------hcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcC-----CHHH
Q 007131 422 EAVMKDGGIRLLLDLA----------KSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSM-----NRLV 485 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL----------~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~-----~~~~ 485 (617)
..+....++..|.++- ...++++...|+++|+|+.. ++..|..+++.|+.+.+++.|+.. +.++
T Consensus 16 ~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~ 95 (446)
T PF10165_consen 16 DPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDV 95 (446)
T ss_pred hhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhH
Confidence 4566666677777665 23478899999999999999 566889999999999999999986 7788
Q ss_pred HHHHHHHHHHhcC-CcchHHHHHh-cCChHHHHHHHhhc-------C-------CCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 486 AEEAAGGLWNLSV-GEEHKGAIAD-AGGVKALVDLIFKW-------S-------SGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 486 ~~~a~~~L~nL~~-~~~~~~~i~~-~g~i~~L~~ll~~~-------~-------~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
.-.....|.-++. ..+.+..+++ .+++..++..|... . ..+......++.++.|+....+....
T Consensus 96 ~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~ 175 (446)
T PF10165_consen 96 EFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP 175 (446)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc
Confidence 8889999988875 4477777776 58888888777540 0 12455778899999999865444322
Q ss_pred HHHhCCHHHHHHHHhc--------CCchhHHHHHHHHHHHH
Q 007131 550 VALAGGVHALVMLARS--------CKFEGVQEQAARALANL 582 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~--------~~~~~~~~~a~~~L~~l 582 (617)
-...+.++.|+..+.. .+-+....++..+|.|+
T Consensus 176 ~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 176 EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 1112334444443321 12257788888888887
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0022 Score=44.88 Aligned_cols=55 Identities=33% Similarity=0.245 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 527 DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+.++..|+++|++++........-.....++.|+.++.+++ +.|+.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~-~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD-DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhcC
Confidence 36889999999998876665544455678899999998875 79999999999875
|
... |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00039 Score=67.45 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=47.5
Q ss_pred HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 221 VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.+++.+++|+.|++++| .++... ...+.+..+++.|.+..|.+..-. ..++.++..|+.|++.++.+..-.
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIE-DGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhh-hhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEe
Confidence 45678888999999886 454322 233345667888888887654333 456677888888888888754433
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00032 Score=50.48 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.0
Q ss_pred CCCceEeecC
Q 007131 205 PNLTDIGFLD 214 (617)
Q Consensus 205 ~~L~~L~l~~ 214 (617)
++|++|++++
T Consensus 25 ~~L~~L~l~~ 34 (61)
T PF13855_consen 25 PNLETLDLSN 34 (61)
T ss_dssp TTESEEEETS
T ss_pred CCCCEeEccC
Confidence 3444444443
|
... |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.085 Score=50.00 Aligned_cols=221 Identities=13% Similarity=0.065 Sum_probs=138.8
Q ss_pred HhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHH-HhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccchhhH
Q 007131 386 SLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAV-MKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNAKVA 462 (617)
Q Consensus 386 ~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i-~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~~~ 462 (617)
.+++.-++-.+.-|...+.+|+.. +.+|..+ ++...-..++++++.. +.++|-...-+++.++.+++..
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~--------~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~a 227 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFD--------VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECA 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHH
Confidence 333444444677788888887543 3333433 3555667888988875 5789999999999999999988
Q ss_pred HHHHHhCC-HHHHHHHHhcC-CHHHHHHHHHHHHHhcC-Cc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH---H
Q 007131 463 KAVAEEGG-INILAVLARSM-NRLVAEEAAGGLWNLSV-GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA---G 535 (617)
Q Consensus 463 ~~i~~~~~-i~~L~~lL~~~-~~~~~~~a~~~L~nL~~-~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~---~ 535 (617)
+.|-+... +.-++++.+.. .+.+.+-+++++.|+.. .+ ..-..+...|-+.+-+++|.+.-..+++++...- .
T Consensus 228 qdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s 307 (432)
T COG5231 228 QDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRS 307 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 76665433 77788888763 45688889999999986 32 3344444456566666776552233333332111 1
Q ss_pred ----------HH-HHhcc--------C---------CCchHHHHHh--CCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 536 ----------AL-ANLAA--------D---------DKCSMEVALA--GGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 536 ----------~L-~~l~~--------~---------~~~~~~i~~~--~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.. ..++. . ..+...+.+. ..+..|.++++...+...-..||.-+..+...
T Consensus 308 ~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~ 387 (432)
T COG5231 308 RLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA 387 (432)
T ss_pred HHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh
Confidence 11 11111 1 1223344433 34678888888764333444566666666653
Q ss_pred CCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 586 GDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 586 ~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+. ...++...|+=+.+.+++.+++++||
T Consensus 388 ~PE---~~~vl~Kyg~k~~im~L~nh~d~~Vk 416 (432)
T COG5231 388 SPE---INAVLSKYGVKEIIMNLINHDDDDVK 416 (432)
T ss_pred Cch---HHHHHHHhhhHHHHHHHhcCCCchhh
Confidence 333 34666788999999999999999885
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0039 Score=35.74 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=17.8
Q ss_pred CcCCCeecccCCCCCCHHHHHHHHh
Q 007131 226 VLSVRFLSVAGTSNMKWGVVSQVWH 250 (617)
Q Consensus 226 ~~~L~~L~l~~~~~i~~~~l~~l~~ 250 (617)
|++|++|++++|.+++|.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4677777777777777777776653
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.00015 Score=52.17 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=27.7
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT 263 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 263 (617)
|+|++|++++| .++. ..+..+++|++|++++| .++.-. ...+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEE-TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccC-HHHHcCCCCCCEEeCcCC
Confidence 46667777666 3332 34556666666666654 222100 112234555555555554
|
... |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.073 Score=55.44 Aligned_cols=167 Identities=17% Similarity=0.061 Sum_probs=112.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh--------CCHHHHHHHHhcCCHHHHHHHHHHH
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD--------GGIRLLLDLAKSWREGLQSEAAKAI 452 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~--------~~i~~Lv~lL~~~~~~~~~~a~~~L 452 (617)
.|.|..+|.+++...++-|..+|..++..+.+ +.+. -.+|.++++.+++++.+|..|+.++
T Consensus 130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~-----------~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQ-----------FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHHhhhHH-----------HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence 38999999998888889999999887543322 2222 2578999999999999999999999
Q ss_pred HHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 453 ANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 453 ~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
..........-...-...++.+..+-.+.+++|++..|.++.-|.....-+..=--.+.++-++..- .+.++.+..+
T Consensus 199 Nq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t---qd~dE~VALE 275 (885)
T KOG2023|consen 199 NQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT---QDVDENVALE 275 (885)
T ss_pred hheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc---cCcchhHHHH
Confidence 8766543322222112235666677777899999999999998874321111111123444444444 4577789999
Q ss_pred HHHHHHHhccCCCchHHHHHh--CCHHHHHH
Q 007131 533 AAGALANLAADDKCSMEVALA--GGVHALVM 561 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~--~~~~~L~~ 561 (617)
|+.-...+|..+-.+..+... ..+|.|+.
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 999999999888666555431 34555554
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0045 Score=35.45 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=9.8
Q ss_pred CCCCeeeccCccCCcHHHHHHH
Q 007131 179 PKLKKLRLSGIRDICGDAINAL 200 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l 200 (617)
++|++|+|++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444433
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.12 Score=56.76 Aligned_cols=143 Identities=22% Similarity=0.229 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHH
Q 007131 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGGINI 473 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~ 473 (617)
-..-++.+|.|+.....+-.++ .-....-.|..+.++.+|... ++.++..|..++..+..+.+.-.-++..|.+..
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasv---fgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASV---FGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhh---ccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHH
Confidence 4467888999987665543221 001233356778888888765 789999999999999999999999999988888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC
Q 007131 474 LAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD 543 (617)
Q Consensus 474 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~ 543 (617)
|+.+|.+ -|..++.++.+|..|+..++......+.|++..+..++- .+.+++.+.+|+..++.|..+
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c--~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC--LTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh--ccCcHHHHHHHHHHHHHhhhc
Confidence 8888855 466899999999999999998888889999999988886 467888999999999999754
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.017 Score=52.05 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhcccCCCcccC----Cc----hhHHHHHhhCCHHHHHHHHhc------CCHHHHHHHHHHHHHhccchh
Q 007131 395 VQERAATGLATFVVINDENASI----DC----GRAEAVMKDGGIRLLLDLAKS------WREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~----~~----~~~~~i~~~~~i~~Lv~lL~~------~~~~~~~~a~~~L~~ls~~~~ 460 (617)
....+++.|.||++.+.....+ .+ .......+..++..|++.+.. ...+-....+.++.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 3456677777776544332101 00 000112344577888888766 234457788999999999999
Q ss_pred hHHHHHHh--CC--HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhc
Q 007131 461 VAKAVAEE--GG--INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (617)
Q Consensus 461 ~~~~i~~~--~~--i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~ 509 (617)
+|..+... +. +..|+....+.+..-+..++++|.|+|++.+....+...
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~ 143 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD 143 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence 99999863 23 677777777787777889999999999998877777764
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0018 Score=61.19 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=55.5
Q ss_pred CCCCCCCC----HHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHHHHHHHHHhCCCceEEEe
Q 007131 37 VVDWTSLP----DDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRF 110 (617)
Q Consensus 37 ~~~~~~LP----~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l 110 (617)
.+.+..|| +++.+.||+||+..++..|..|||+|+++..++-+|+.+-....+.+ +.+..+.++-.--+.+.+
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~d-slWrgl~e~rqw~~~lf~ 148 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTD-SLWRGLSERRQWDQYLFK 148 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchH-HHHhhhhhccCcchhhcc
Confidence 46788899 99999999999999999999999999999999999987754443333 445555554332344444
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.036 Score=57.55 Aligned_cols=203 Identities=18% Similarity=0.125 Sum_probs=125.4
Q ss_pred HHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch----
Q 007131 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA---- 459 (617)
Q Consensus 384 l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~---- 459 (617)
++.+.+..+..++..|+.+|..|.. .-+. ........++.+.+.+.++|..|+.+++-.+.-.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL-----------~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKL-----------SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccc-----------cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 6677778888999999999888743 1111 1123456788888888999999977766555411
Q ss_pred --hh-HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-c----------------------------------
Q 007131 460 --KV-AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-E---------------------------------- 501 (617)
Q Consensus 460 --~~-~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~---------------------------------- 501 (617)
++ ...+. -.++..+++.+.+.+-.++..|+.+|+.+..-+ +
T Consensus 270 e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 270 ERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred cchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence 11 11111 224556666666665566666666655443221 1
Q ss_pred ----------------hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc
Q 007131 502 ----------------HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS 565 (617)
Q Consensus 502 ----------------~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~ 565 (617)
.-..|+..|+--.++.-+++ +--+|+++|...+..|+...+. .....+..|+.++.+
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMfND 421 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMFND 421 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHhcc
Confidence 11122333344444444432 3457899999999999976655 112356788888887
Q ss_pred CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 566 CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.. +.|+..|..+|..|+.... ++...++.+...+.+.+.+||
T Consensus 422 E~-~~VRL~ai~aL~~Is~~l~---------i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 422 EI-EVVRLKAIFALTMISVHLA---------IREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HH-HHHHHHHHHHHHHHHHHhe---------ecHHHHHHHHHHHHhcCHHHH
Confidence 64 8999999999999986422 234456666666666655554
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.19 Score=43.25 Aligned_cols=117 Identities=13% Similarity=0.151 Sum_probs=90.0
Q ss_pred hHHHHhcChHHHHHhhccCC------HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHH
Q 007131 373 DDFWLKQGAGLLLSLMQSTQ------EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGL 444 (617)
Q Consensus 373 ~~~~~~~~i~~l~~~l~~~~------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~ 444 (617)
.+|+...|+..+++++..+. .+....++.++..|.....-. =...+..++..++...... ++.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs--------Wd~l~~~FI~Kia~~Vn~~~~d~~i 76 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS--------WDTLSDSFIKKIASYVNSSAMDASI 76 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc--------hhhccHHHHHHHHHHHccccccchH
Confidence 35677889999999997654 466777888888875432211 1345667788888888754 6889
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 445 QSEAAKAIANLSVNAKVAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 445 ~~~a~~~L~~ls~~~~~~~~i~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~nL~ 497 (617)
...|..+|-++..+.+.....+.... ++.|+..|+..+++++.+|...+-.|-
T Consensus 77 ~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 77 LQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999998887666666665 899999999999999999987776664
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.76 Score=46.31 Aligned_cols=190 Identities=13% Similarity=0.116 Sum_probs=126.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC-------HHHHHHHHHHHHHh
Q 007131 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-------EGLQSEAAKAIANL 455 (617)
Q Consensus 383 ~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-------~~~~~~a~~~L~~l 455 (617)
....+....+.+.|..|+.....+...+|-+ ...++.+.++-+.+.+-++|.+.+ .-.+..+..+|+-.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~----a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIV----ALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchh----hhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3456666677777888888888887776655 455678889988999999997642 23577788899988
Q ss_pred ccchhh--HHHHHHhCCHHHHHHHHhcC-CH------HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCC
Q 007131 456 SVNAKV--AKAVAEEGGINILAVLARSM-NR------LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGG 526 (617)
Q Consensus 456 s~~~~~--~~~i~~~~~i~~L~~lL~~~-~~------~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 526 (617)
+..++. .+.+ .+.||.|.+++... ++ .+.+.+-.+|..++..+.....++..|+++.+.++-.- ++.+
T Consensus 91 C~~pElAsh~~~--v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~ 167 (698)
T KOG2611|consen 91 CRVPELASHEEM--VSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGS 167 (698)
T ss_pred hCChhhccCHHH--HHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCc
Confidence 888874 3344 34589999999862 22 37889999999999999999999999999999977654 4444
Q ss_pred HHHHHHHHHHHHHhc----cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 527 DGVLERAAGALANLA----ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 527 ~~~~~~a~~~L~~l~----~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.+. .-++-++.-+. ..++....+.. .+..+..=+... +...+..+|..|..+-
T Consensus 168 ~d~-alal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 168 HDM-ALALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVL 224 (698)
T ss_pred hhH-HHHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence 332 22222222222 23333344433 133333333333 3567777777777543
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=49.32 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=134.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.|-.-|..++..++.-+|..+..+..++|.|.. .....++..|.++.++..+...+.++-..|...+..++..++.
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaV---seillvvNaeilklildcIggeddeVAkAAiesikrialfpaa 161 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAV---SEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAA 161 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhH---HHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHH
Confidence 5666667778888999999988888777775521 1113456889999999999999999999999999999999998
Q ss_pred HHHHHHhCCHH--HHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 462 AKAVAEEGGIN--ILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 462 ~~~i~~~~~i~--~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
-+.+....-.+ .+.++-...++-++......+..+.. +++.....-..|.+..|..=|. -..+.-++.+++....
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk--GteDtLVianciElvt 239 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK--GTEDTLVIANCIELVT 239 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc--CCcceeehhhHHHHHH
Confidence 88888766543 44455445566667777777777754 4455555556777777666664 2345567888999999
Q ss_pred HhccCCCchHHHHHhCCHHHHHHHHh
Q 007131 539 NLAADDKCSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 539 ~l~~~~~~~~~i~~~~~~~~L~~ll~ 564 (617)
.|+....+++.+.+.|.+..+...+.
T Consensus 240 eLaeteHgreflaQeglIdlicnIIs 265 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIIS 265 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhh
Confidence 99999999999999999998888775
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.3 Score=50.87 Aligned_cols=177 Identities=13% Similarity=0.062 Sum_probs=115.4
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC----CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG----GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKA 464 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~----~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~ 464 (617)
.+....+|..|..+...+.. ..... .++.++.-+.+.....+..++..+..++...+..-.
T Consensus 226 ~d~~~~Vr~Aa~~a~kai~~---------------~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 226 GDKINKVREAAVEAAKAIMR---------------CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred hccchhhhHHHHHHHHHHHH---------------hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 34456777777766665521 12222 334444444444677889999999999997776667
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-----------------------
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK----------------------- 521 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~----------------------- 521 (617)
..-...||.+.+.|-+..+++++.+..+|..++.--+|-... -.+|.|++.+.+
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence 777788999999999999999999999999887654443311 133444443332
Q ss_pred -------------cCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 522 -------------WSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 522 -------------~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
....+..+.+.++.+++|+|..-+....+.. ...+|.+-+.+... .+++|+.|+.+|..+-.
T Consensus 368 psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 368 PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALLE 444 (569)
T ss_pred hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHH
Confidence 0113456778899999999965544333332 12334444444455 48999999999977765
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=44.60 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHH
Q 007131 486 AEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVAL 552 (617)
Q Consensus 486 ~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~ 552 (617)
+...+.+|+||+.. +.++..+.+.||+|.++..... .+.++-+++-|..|+.||+.+. +++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45667899999964 5899999999999999988765 5678999999999999999754 55655554
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0067 Score=39.95 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++|++++|.+++ ++..+.++++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 467788888877763 3444567888888888888644
|
... |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.18 Score=48.09 Aligned_cols=177 Identities=12% Similarity=0.061 Sum_probs=128.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccchh--h-H--HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHH
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAK--V-A--KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~--~-~--~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 505 (617)
+.|-+=|..++..++..+|..+..+..+-+ . . ..++..+..+.++..+-..+.++..+|...+..++..++.-..
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaalea 164 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEA 164 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHH
Confidence 444444455678889999988888777433 1 1 2334566689999999999999999999999999999988888
Q ss_pred HHhcCChHHH--HHHHhhcCCCCHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 506 IADAGGVKAL--VDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 506 i~~~g~i~~L--~~ll~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+.+.+....+ ..+-.+ .+.-++..+...+-.+.+ .++........|.+..|..-++...+.-+..++......|
T Consensus 165 iFeSellDdlhlrnlaak---cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 165 IFESELLDDLHLRNLAAK---CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred hcccccCChHHHhHHHhh---hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 8887777664 333322 444667777887777764 4455666677777777777776544567888899999999
Q ss_pred hccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 583 AAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 583 ~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
+....++ +.+.+.|.++.+..++...+.
T Consensus 242 aeteHgr----eflaQeglIdlicnIIsGads 269 (524)
T KOG4413|consen 242 AETEHGR----EFLAQEGLIDLICNIISGADS 269 (524)
T ss_pred HHHhhhh----hhcchhhHHHHHHHHhhCCCC
Confidence 9876663 455567889988888776443
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.046 Score=49.26 Aligned_cols=119 Identities=16% Similarity=0.016 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHh----------------CCHHHHHHHHhc------CCHHHHHHHHHHHHHhc
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEE----------------GGINILAVLARS------MNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~----------------~~i~~L~~lL~~------~~~~~~~~a~~~L~nL~ 497 (617)
.+......++.+|+|++..++.+..+.+. ..+..|+.+... ...+-..+.+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34456678899999999988887755532 136677777655 22345678899999999
Q ss_pred CCcchHHHHHhcC--C--hHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhC---CHHHHHH
Q 007131 498 VGEEHKGAIADAG--G--VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAG---GVHALVM 561 (617)
Q Consensus 498 ~~~~~~~~i~~~g--~--i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~---~~~~L~~ 561 (617)
..++.|.-+.+.. . +..|+.... +.+.-=+.-+++++.|+|.+.+....+.... .++.|+-
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~---~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTE---HKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhc---cCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHh
Confidence 9999999999732 3 445555553 3354556778999999999888887777643 3444444
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0039 Score=64.90 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=25.8
Q ss_pred CCeecccCCCCCCHHHHHHHHhcC----CCCCeEEeccCCCCH---HHHHHHHhcCCCCCEEEccCCC
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHKL----PKLVGLDVSRTDVGP---ITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~~----~~L~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+..|++..| .+.|.++..+...+ +.+++++++.|.+++ ..+.+.+..++.++.+.+++++
T Consensus 235 ~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 235 LRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 344444443 34444444444322 223555555544332 2233334444555555555444
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.00091 Score=69.99 Aligned_cols=107 Identities=22% Similarity=0.189 Sum_probs=69.1
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH-hcCCCCceEeecCCCCCCHHHHhcC
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA-KLCPNLTDIGFLDCLNVDEVALGNV 226 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~l~~~ 226 (617)
+-+|.|+.|+|+ .+++++ ++.+ ..|+.|++|+|+++ .++. +..+. ..| +|..|.+.+|..-+-.++.++
T Consensus 184 qll~ale~LnLs---hNk~~~--v~~L-r~l~~LkhLDlsyN-~L~~--vp~l~~~gc-~L~~L~lrnN~l~tL~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLS---HNKFTK--VDNL-RRLPKLKHLDLSYN-CLRH--VPQLSMVGC-KLQLLNLRNNALTTLRGIENL 253 (1096)
T ss_pred HHHHHhhhhccc---hhhhhh--hHHH-Hhcccccccccccc-hhcc--ccccchhhh-hheeeeecccHHHhhhhHHhh
Confidence 445688999995 345654 3333 45899999999986 3322 11121 123 388999999844444788899
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDV 265 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 265 (617)
++|+.|++++|--.....+..+ ..+..|+.|.+.||.+
T Consensus 254 ksL~~LDlsyNll~~hseL~pL-wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPL-WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHH-HHHHHHHHHhhcCCcc
Confidence 9999999998733333333333 3456678888888643
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.00027 Score=60.33 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC-CCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL-NVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+.+|+.|+++.+ ++.+ +..-.+.+|+|+.|+++-+. .+...++.+++-|+.|+++++ ++++..+..-+-....|+
T Consensus 55 l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 55 LKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLR 130 (264)
T ss_pred hhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHH
Confidence 345555555544 3322 22222344566666665442 122345566666666666654 444433322222233455
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
-|.++.+++ +.++.=+..+++|+.|.+.+++.++
T Consensus 131 alyl~dndf--e~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 131 ALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred HHHhcCCCc--ccCChhhhhhcceeEEeeccCchhh
Confidence 555555543 2233334456666666666665443
|
|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0047 Score=58.15 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHc-----cCChHhHHHHhhhchhHHHhhcCCCccc
Q 007131 38 VDWTSLPDDTVIQLMS-----CLNYRDRASLSSTCRTWRALGASPCLWS 81 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~-----~L~~~~~~~~~~vck~w~~~~~~~~~w~ 81 (617)
.+|..||||+|..||. .++++++.+++.|||.|+..++++.+|+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR 153 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWR 153 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHH
Confidence 3478999999999996 4578999999999999999999999985
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0032 Score=65.56 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=116.1
Q ss_pred ccEEeccCCCCCCHHHHHHHH---hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC----CCCeeeccCccCCcHHHHHH
Q 007131 127 LRELSGDYCRKITDATLSVIV---ARHEALESLQLGPDFCERITSDAVKAIALCCP----KLKKLRLSGIRDICGDAINA 199 (617)
Q Consensus 127 L~~L~l~~~~~~~~~~l~~i~---~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~----~L~~L~l~~~~~i~~~~l~~ 199 (617)
+..|.|.+|. +.+.+...+. ...++|+.|++++ + .+++.+...+....+ .|++|.+..| .++.++...
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~--n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSG--N-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAP 163 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhccc--C-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHH
Confidence 7788888887 6666655554 4667899999963 4 677888888776543 4677888888 677766554
Q ss_pred HH---hcCCCCceEeecCCCCCCHH------HHh----cCcCCCeecccCCCCCCHHHHHHHH---hcCCC-CCeEEecc
Q 007131 200 LA---KLCPNLTDIGFLDCLNVDEV------ALG----NVLSVRFLSVAGTSNMKWGVVSQVW---HKLPK-LVGLDVSR 262 (617)
Q Consensus 200 l~---~~~~~L~~L~l~~~~~~~~~------~l~----~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~-L~~L~l~~ 262 (617)
+. ..++.++.++++.|...... ++. ...++++|++++| .++......+. ...+. +..|++..
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 44 23678888899888544321 123 3578999999998 66666655544 33444 66699999
Q ss_pred CCCCHHHHHHHHhcCC----CCCEEEccCCCCCChhHH
Q 007131 263 TDVGPITISRLLTSSK----SLKVLCALNCPVLEEENN 296 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~----~L~~L~l~~c~~~~~~~~ 296 (617)
|.+++..+..+...++ .+++++++.|.+......
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 9888887776666544 559999999997776653
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.12 Score=52.99 Aligned_cols=194 Identities=16% Similarity=0.100 Sum_probs=124.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcc-cCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVV-INDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
.-|..+|...+++++.-+-.++.++-. ..... ..+.-...++.++.-+.++++.+|..|..-+.....-..
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P--------~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP--------SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc--------cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC
Confidence 566777777778887655544443321 11111 112344567888888999999999999776665555333
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCH-HHHHHHHHH---HHHhcCCcchHHHHHhc-CChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNR-LVAEEAAGG---LWNLSVGEEHKGAIADA-GGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~---L~nL~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
......-.|.+..++.++.+.++ .+.+.|..+ |..+...+..... ++. ..+..+.+.+ .++..+.+..|+.
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l---~~~~~~tri~~L~ 358 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYL---SDDREETRIAVLN 358 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHh---hcchHHHHHHHHH
Confidence 22223334445666667766544 344444332 3334443333333 332 3455566666 4577788999999
Q ss_pred HHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.+..|-..-+++........++.|..-+.+.. +++...+..+++++|.+...
T Consensus 359 Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~s-d~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 359 WIILLYHKAPGQLLVHNDSIFLTLLKTLSDRS-DEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHhhCcchhhhhccHHHHHHHHhhcCch-hHHHHHHHHHHHHHhcCccc
Confidence 99999877777777777778888888887764 89999999999999975443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.79 E-value=6.7e-05 Score=63.95 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=15.1
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 124 ARNLRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
.++|+.|++++.. +.+ +..-...+|.|+.|+++
T Consensus 55 l~nlevln~~nnq-ie~--lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVG 87 (264)
T ss_pred hhhhhhhhcccch-hhh--cChhhhhchhhhheecc
Confidence 4455555555433 222 22223345555555554
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.24 Score=49.81 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=101.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+.+..++...++.++..|+.+|..+ ....+++.+++++. +.+..++..|+.+|..+-.
T Consensus 77 ~~l~~~l~d~~~~vr~~a~~aLg~~------------------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--- 135 (335)
T COG1413 77 PLLRELLSDEDPRVRDAAADALGEL------------------GDPEAVPPLVELLENDENEGVRAAAARALGKLGD--- 135 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHcc------------------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc---
Confidence 8888999999999999999977754 22346789999999 5789999999999986533
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCH------------HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNR------------LVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG 528 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~------------~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 528 (617)
..++..++..+..... .++..++.+|..+- ....++.+...+. +....
T Consensus 136 -------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~---~~~~~ 195 (335)
T COG1413 136 -------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----------DPEAIPLLIELLE---DEDAD 195 (335)
T ss_pred -------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----------ChhhhHHHHHHHh---CchHH
Confidence 2336677777766542 23444444443332 2357777888885 35668
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 529 VLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 529 ~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
++..|..+|..+.... ..+.+.+...+.+.. ..++..++.+|..+
T Consensus 196 vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~-~~vr~~~~~~l~~~ 240 (335)
T COG1413 196 VRRAAASALGQLGSEN--------VEAADLLVKALSDES-LEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC-HHHHHHHHHHhccc
Confidence 8888998888887544 223344555555443 56666666665554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.01 Score=61.39 Aligned_cols=175 Identities=20% Similarity=0.215 Sum_probs=106.4
Q ss_pred CCceEEEecCCCCccHHHHh-cC-CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSIIHL-QA-RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+.++.|.+.+....+-.... .. ++|+.|++++.. +.+ +..-...+++|+.|+++ ++ .+++. .......++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~--l~~~~~~l~~L~~L~l~--~N-~l~~l--~~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IES--LPSPLRNLPNLKNLDLS--FN-DLSDL--PKLLSNLSN 187 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-hhh--hhhhhhccccccccccC--Cc-hhhhh--hhhhhhhhh
Confidence 56777777766544322222 33 278888887765 333 21234568888888885 23 44432 222224678
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
|+.|+++++ .+++ +.........|++|.++++..+.. ..+..++++..|.+..+... + +......+++|+.|+
T Consensus 188 L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~--~~~~~~~l~~l~~L~ 261 (394)
T COG4886 188 LNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-D--LPESIGNLSNLETLD 261 (394)
T ss_pred hhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-e--ccchhccccccceec
Confidence 888888887 4433 222222334588888888743333 45677777877776665322 1 123445677899999
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++++.++...- +....+++.|+++++......
T Consensus 262 ~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 262 LSNNQISSISS---LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccccccccc---ccccCccCEEeccCccccccc
Confidence 99987654432 456788999999988766554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.23 Score=53.11 Aligned_cols=206 Identities=14% Similarity=0.125 Sum_probs=118.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
.|...+++++.++-++++|+.++..+-....+.. ..+++...++|.+.+..+...++..+..++. ++
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~------------e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV------------EHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH------------HHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 3888889999999999999999888765544432 1234455555555555555555554444444 22
Q ss_pred hhHHHHHH----------------------hCCH---------HHHHHHHhcCCHHHHHHHHHHHHHhcCCc---chHHH
Q 007131 460 KVAKAVAE----------------------EGGI---------NILAVLARSMNRLVAEEAAGGLWNLSVGE---EHKGA 505 (617)
Q Consensus 460 ~~~~~i~~----------------------~~~i---------~~L~~lL~~~~~~~~~~a~~~L~nL~~~~---~~~~~ 505 (617)
+.-..+.+ .+|| =.++++|...+++..+.-..+|..++.+. .|...
T Consensus 212 ~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~Gn 291 (866)
T KOG1062|consen 212 DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGN 291 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchh
Confidence 21111111 1111 12334455566666667777777776543 23333
Q ss_pred HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc--hH-------HHH--HhCCH----HHHHHHHhcCCchh
Q 007131 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC--SM-------EVA--LAGGV----HALVMLARSCKFEG 570 (617)
Q Consensus 506 i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~-------~i~--~~~~~----~~L~~ll~~~~~~~ 570 (617)
.+-...|..+..+. .+.+++..|+.+|+-+-.++++ |. .++ +..++ ..+++++++++ ..
T Consensus 292 AILYE~V~TI~~I~-----~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD-~S 365 (866)
T KOG1062|consen 292 AILYECVRTIMDIR-----SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPD-VS 365 (866)
T ss_pred HHHHHHHHHHHhcc-----CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCc-HH
Confidence 33234555555444 5668888888888888765544 11 111 11222 34788888886 89
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++..|...+..|.. ..+... .++.|+..|.+..+
T Consensus 366 IkrralELs~~lvn-----~~Nv~~-----mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 366 IKRRALELSYALVN-----ESNVRV-----MVKELLEFLESSDE 399 (866)
T ss_pred HHHHHHHHHHHHhc-----cccHHH-----HHHHHHHHHHhccH
Confidence 99999999999874 223233 35556665555433
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.04 Score=44.80 Aligned_cols=68 Identities=15% Similarity=0.058 Sum_probs=55.8
Q ss_pred CHHHHHHHHhc-CCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 429 GIRLLLDLAKS-WREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 429 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
.+..|+++|.+ .++.....||.=|+.++. .+.++..+.+.|+-..++++|..++++|+..|+.++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45688888843 478888999999999988 677888888888889999999999999999999988765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.3 Score=43.74 Aligned_cols=193 Identities=17% Similarity=0.111 Sum_probs=113.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH--hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM--KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~--~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
...++.+.......|..++..+.++-...... +.+. ....+..+.+.++.+..+.+..|+.++.-++..
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~--------d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLP--------DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH--------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 44555555566788999999888865333221 2222 334567888888888777788888888877764
Q ss_pred --hhhHHHHHHhCCHHHHHHHHhcCC--HHHHHHHHHHHHHhcCCc-chHHHHHh-cCChHHHHHH--Hhh-c------C
Q 007131 459 --AKVAKAVAEEGGINILAVLARSMN--RLVAEEAAGGLWNLSVGE-EHKGAIAD-AGGVKALVDL--IFK-W------S 523 (617)
Q Consensus 459 --~~~~~~i~~~~~i~~L~~lL~~~~--~~~~~~a~~~L~nL~~~~-~~~~~i~~-~g~i~~L~~l--l~~-~------~ 523 (617)
.+....+.+ ...|.|.+.+.... +.++..++.+|+-+++-. ..-..+.+ ...+..+... ... + .
T Consensus 118 g~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 118 GAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred CCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 122334433 35678888888754 345556666666555421 11111110 1122222111 111 0 1
Q ss_pred CCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 524 SGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+++.+..+|+.+-+-|... +..+..-.-...++.|+.+|.+++ .+|+.+|..+|+-|-.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d-~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD-VDVRIAAGEAIALLYE 257 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 12356888888777777643 332222122356899999999885 8999999988887654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.023 Score=62.06 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=44.8
Q ss_pred CceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEE
Q 007131 207 LTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVL 283 (617)
Q Consensus 207 L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 283 (617)
++.|+++++. ++ ...+..+++|+.|++++| .++. .+......+++|+.|++++|.++... +..+.++++|+.|
T Consensus 420 v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC-ccccCCHHHhCCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEE
Confidence 5566666652 22 234566667777777665 2221 11222345667777777776654332 4445566777777
Q ss_pred EccCCCCC
Q 007131 284 CALNCPVL 291 (617)
Q Consensus 284 ~l~~c~~~ 291 (617)
++++|...
T Consensus 496 ~Ls~N~l~ 503 (623)
T PLN03150 496 NLNGNSLS 503 (623)
T ss_pred ECcCCccc
Confidence 77766544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.046 Score=55.08 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=93.1
Q ss_pred HHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+.|+++++|++++|... .++ ..-.+|++|.+++|..++. +.... .++|+.|+++ +|..+. .-.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls--~Cs~L~--------sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVC--HCPEIS--------GLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEcc--Cccccc--------ccc
Confidence 344699999999999432 222 2234799999999986532 11111 2589999995 475553 113
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHh-cC-cCCCeecccCCCCCCHHHHHHHHh-cCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALG-NV-LSVRFLSVAGTSNMKWGVVSQVWH-KLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~-~~-~~L~~L~l~~~~~i~~~~l~~l~~-~~~~L 255 (617)
++|+.|++.+. .... +...-++|++|.+.++.......+. .+ ++|++|++++|..+. +.. -..+|
T Consensus 112 ~sLe~L~L~~n-~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~------LP~~LP~SL 179 (426)
T PRK15386 112 ESVRSLEIKGS-ATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII------LPEKLPESL 179 (426)
T ss_pred cccceEEeCCC-CCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc------CcccccccC
Confidence 57888988754 3221 2223357888888654222222221 23 689999999886542 111 12478
Q ss_pred CeEEeccCC-----CCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 256 VGLDVSRTD-----VGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 256 ~~L~l~~~~-----~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++|+++.+. +....++ +++ .|++.+|-.+.
T Consensus 180 k~L~ls~n~~~sLeI~~~sLP------~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 180 QSITLHIEQKTTWNISFEGFP------DGL-DIDLQNSVLLS 214 (426)
T ss_pred cEEEecccccccccCcccccc------ccc-EechhhhcccC
Confidence 999887642 1222221 345 77777774443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.031 Score=52.71 Aligned_cols=169 Identities=18% Similarity=0.078 Sum_probs=96.2
Q ss_pred hcCCHHHHHHHHHHHHHhccch---hhHHHHHH--hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCCh
Q 007131 438 KSWREGLQSEAAKAIANLSVNA---KVAKAVAE--EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512 (617)
Q Consensus 438 ~~~~~~~~~~a~~~L~~ls~~~---~~~~~i~~--~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i 512 (617)
.+.+.+.|..|+.-|..+.... +....+.. ...+..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3457889999999998888744 33333322 133456667777777788999999999998543222111123467
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCc
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (617)
|.|++.+. +....++..|..+|..++..-.....+. ++.+.....+. ++.++..++..+..+...... .
T Consensus 97 ~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~---~ 165 (228)
T PF12348_consen 97 PPLLKKLG---DSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSK-NPQVREECAEWLAIILEKWGS---D 165 (228)
T ss_dssp HHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S--HHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHc---cccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccc---h
Confidence 77888774 4667888999999999986544111111 23444455555 489999999999988753331 1
Q ss_pred cccccc----cCcHHHHHHHhcCCCCCCC
Q 007131 593 SAVGQE----AGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 593 ~~~~~~----~g~~~~L~~ll~~~~~~vr 617 (617)
...+.. ...++.+...+.+++++||
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR 194 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVR 194 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHH
Confidence 112112 2367888888888888776
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.018 Score=64.76 Aligned_cols=106 Identities=15% Similarity=0.051 Sum_probs=56.2
Q ss_pred hCCCceEEEecCCCC--ccH--HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 101 RCMNLQKLRFRGAES--ADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~--~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
.|++|++|-+.++.. ... ......|.|+.|||++|..++. +......+-+|++|++. ...+.. ++.-..
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~---~t~I~~--LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLS---DTGISH--LPSGLG 615 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhccccc---CCCccc--cchHHH
Confidence 455677777776642 111 1123678888888887654332 44444556677877774 234431 111122
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDC 215 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 215 (617)
.+.+|.+|++.+..... .+..+...+++|++|.+..-
T Consensus 616 ~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHhhheeccccccccc--cccchhhhcccccEEEeecc
Confidence 24566677766543221 11333334567777766543
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.47 Score=51.57 Aligned_cols=67 Identities=21% Similarity=0.069 Sum_probs=29.4
Q ss_pred ChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 511 GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 511 ~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.++++.+++ .+.++.|++.|+-|+..+=.- .+..+.+.|.+..+..++.+.+ +.+..+|..+|..+.
T Consensus 128 ~~~~ik~~l---~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLL---TDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSD-PIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHc---cCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCC-chHHHHHHHHHHHhc
Confidence 334444444 234445555555555544321 1222333344444444444432 455555555555543
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.35 Score=45.48 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhc-CCcchHHHHHhcCChHHHHHHH
Q 007131 443 GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLS-VGEEHKGAIADAGGVKALVDLI 519 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~g~i~~L~~ll 519 (617)
.....|..+|.-+.. +++.+..+.+..+++.++++|.. ..+.++.+++.+|..+- .++.|...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345667788888887 89999999999999999999954 66788888998888775 5668999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHhcc
Q 007131 520 FKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 520 ~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
+. .+.+.+++-+++.-|+-...
T Consensus 186 k~-~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KS-KSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cc-ccccHHHhHHHHHHHHHHHc
Confidence 87 55677888888877766554
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.9 Score=39.76 Aligned_cols=177 Identities=13% Similarity=0.052 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhccchh--hHHHHHHh
Q 007131 396 QERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-----REGLQSEAAKAIANLSVNAK--VAKAVAEE 468 (617)
Q Consensus 396 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~ls~~~~--~~~~i~~~ 468 (617)
.-+|+..|..+|+..+. |..+.++..---+..+|... .+-+|-.+.++++.|..+++ .-..+...
T Consensus 96 VcnaL~LlQcvASHpdT--------r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T 167 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDT--------RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT 167 (293)
T ss_pred HHHHHHHHHHHhcCcch--------HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 35677777777766544 35777777666666676543 35689999999999998443 45566778
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch----HHHHHhcC----ChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 469 GGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH----KGAIADAG----GVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 469 ~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~----~~~i~~~g----~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+.||..++.+..+++..+.-|+-++..+-.++.+ ++..-+-- .+..++.-+. ..++..+...+++|..+|
T Consensus 168 eIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~--~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 168 EIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLV--SMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHh
Confidence 8999999999999998899999999888776632 22222222 2333333333 457889999999999999
Q ss_pred ccCCCchHHHHHh--CCH--HHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 541 AADDKCSMEVALA--GGV--HALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 541 ~~~~~~~~~i~~~--~~~--~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.++..|..+... ..+ ..+..+++++ ...+..-...+.|++.
T Consensus 246 sdnprar~aL~~clPd~Lrd~tfs~~l~~D--~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 246 SDNPRARAALRSCLPDQLRDGTFSLLLKDD--PETKQWLQQLLKNLCT 291 (293)
T ss_pred cCCHHHHHHHHhhCcchhccchHHHHHhcC--hhHHHHHHHHHHHhcc
Confidence 9988877777642 111 2244455553 4677777777777764
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.64 Score=41.77 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCC-
Q 007131 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG- 470 (617)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~- 470 (617)
++.+|.+++.++.-|+..-+. + -...++.+...|.++++.+|..|+.+|.+|...+..+. .|-
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----------~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l 64 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----------L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQL 64 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----------H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhh
Confidence 467899999999988644322 1 23457899999999999999999999999987543221 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHh
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~ 520 (617)
+..++.++.+++++++..|..++..+..... ...+ ...++.++..+.
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~-~~~i--~~~~~e~i~~l~ 111 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKKRN-PNII--YNNFPELISSLN 111 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-chHH--HHHHHHHHHHHh
Confidence 3778888999999999999999999986521 1111 234555555554
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.3 Score=50.91 Aligned_cols=159 Identities=19% Similarity=0.121 Sum_probs=113.3
Q ss_pred HHHHHHHhccchhhHHHHHHhCCHHHHHHHH----------hcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHH
Q 007131 448 AAKAIANLSVNAKVAKAVAEEGGINILAVLA----------RSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALV 516 (617)
Q Consensus 448 a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL----------~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~ 516 (617)
|+.+|+.++.++.+.+.+....++..|++.- ...++.+...|..+|+|+-... ..|..+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3567888888888888888888888888776 2256789999999999999755 7888889999999999
Q ss_pred HHHhhcCC--CCHHHHHHHHHHHHHhcc-CCCchHHHHHh-CCHHHHHHHHhc--------C--------CchhHHHHHH
Q 007131 517 DLIFKWSS--GGDGVLERAAGALANLAA-DDKCSMEVALA-GGVHALVMLARS--------C--------KFEGVQEQAA 576 (617)
Q Consensus 517 ~ll~~~~~--~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~-~~~~~L~~ll~~--------~--------~~~~~~~~a~ 576 (617)
..|....+ .+.++.--..+.|--++. ..+.+..+++. +++..++..+.. . .+......+.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 99986211 256777778888888874 45556666554 777777775531 0 1235566788
Q ss_pred HHHHHHhccCCCCCCccccccccCcHHHHHHHhc
Q 007131 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~ 610 (617)
.++.|++.+...... -.+.+.++.|+.++.
T Consensus 161 KllFNit~~~~~~~~----~~~~~~~~~l~~il~ 190 (446)
T PF10165_consen 161 KLLFNITLHYPKSVP----EEFSPSIPHLVSILR 190 (446)
T ss_pred HHHHHhhhccCcccc----hhhhHHHHHHHHHHH
Confidence 889999876554321 124556666666543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.82 Score=48.48 Aligned_cols=178 Identities=15% Similarity=0.074 Sum_probs=121.5
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccc
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVN 458 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~ 458 (617)
.+|.|++-|..+++.++-.|+.+++.||+.++.+. - ...|.+.+++.+. |-.+........++|+--
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-------L-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl 249 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-------L-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL 249 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-------c-----cccHHHHHHHhccCCCeehHHHHHHHhhcccc
Confidence 34899999999999999999999999998877662 1 2448888888765 677888888888888874
Q ss_pred hh-hHHHHHHhCCHHHHHHHHhcCCH-HHHHHHHHHHH--HhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 459 AK-VAKAVAEEGGINILAVLARSMNR-LVAEEAAGGLW--NLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 459 ~~-~~~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~--nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
++ .... -+++|++++.+... .+...+..++. |++.+. ++-+.+. -++..|-.++. ++++.+++-+
T Consensus 250 EPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fie---dsDqNLKYlg 319 (877)
T KOG1059|consen 250 EPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIE---DSDQNLKYLG 319 (877)
T ss_pred Cchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhh---cCCccHHHHH
Confidence 44 2222 37889999988554 45555544443 444332 2222222 15666666664 4777899999
Q ss_pred HHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 534 ~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+-+++-+....+. .++ .--..++++|.+.+ +.++..|.-.|.-+..
T Consensus 320 Llam~KI~ktHp~---~Vq-a~kdlIlrcL~DkD-~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 320 LLAMSKILKTHPK---AVQ-AHKDLILRCLDDKD-ESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHhhhCHH---HHH-HhHHHHHHHhccCC-chhHHHHHHHHHHHhh
Confidence 9888888743322 222 12256778888775 8899999998888864
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.019 Score=64.56 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=104.4
Q ss_pred ceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCee
Q 007131 105 LQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKL 184 (617)
Q Consensus 105 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L 184 (617)
++++.+-++......-...++.|+.|-+.....--...-...+..+|.|+.|||+ +|...+ .++.....+-+|++|
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs--~~~~l~--~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS--GNSSLS--KLPSSIGELVHLRYL 600 (889)
T ss_pred eeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECC--CCCccC--cCChHHhhhhhhhcc
Confidence 4555554443333223346778999888775420112223345668999999996 454443 243434447789999
Q ss_pred eccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HH-HhcCcCCCeecccCCC-CCCHHHHHHHHhcCCCCCeEEec
Q 007131 185 RLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VA-LGNVLSVRFLSVAGTS-NMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 185 ~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~-l~~~~~L~~L~l~~~~-~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++++. .++ .+..=...+..|.+|++..+..... .+ ...+++|++|.+.... ..+...+..+ .++.+|+.+.+.
T Consensus 601 ~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 601 DLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSIT 676 (889)
T ss_pred cccCC-Ccc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheee
Confidence 99987 565 2222223456899999987654333 23 3558999999987643 2222223333 455566655554
Q ss_pred cCCC------------------------CHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 262 RTDV------------------------GPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 262 ~~~~------------------------~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.... ....+...+..+++|+.|.+.+|......
T Consensus 677 ~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 677 ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhh
Confidence 4221 00111112334678888999988865443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.48 Score=49.40 Aligned_cols=207 Identities=18% Similarity=0.088 Sum_probs=128.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+++....-..+..|...+..+...... ..+.+.+.+..+.+.+.+.+...++.++ .++..+....
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i---------~~~~~~~~l~~l~~ai~dk~~~~~re~~-~~a~~~~~~~- 205 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGI---------ESLKEFGFLDNLSKAIIDKKSALNREAA-LLAFEAAQGN- 205 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcHH---------hhhhhhhHHHHHHHHhcccchhhcHHHH-HHHHHHHHHh-
Confidence 6677777776667788888888887543322 3567788888898888876544444321 1111111000
Q ss_pred HHHHHHhCCHHHHHHHH---hcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLA---RSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL---~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
-....+...++.+-.++ .+....++++|..+...+-..- ..... -.+|.++.-+.. ..-+-+..++..+
T Consensus 206 Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~---~kWrtK~aslell 278 (569)
T KOG1242|consen 206 LGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLE---AKWRTKMASLELL 278 (569)
T ss_pred cCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHH---HhhhhHHHHHHHH
Confidence 00112223344444444 4456678887777765553221 11111 134444444432 2345677888899
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
..|+...+..-...-...+|.+.+.|-+.. ++++.++-.+|..++...++. .+. -.++.|++.+.++..
T Consensus 279 g~m~~~ap~qLs~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svidN~----dI~---~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 279 GAMADCAPKQLSLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVIDNP----DIQ---KIIPTLLDALADPSC 347 (569)
T ss_pred HHHHHhchHHHHHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhccH----HHH---HHHHHHHHHhcCccc
Confidence 999887777777777788999999998875 899999999999999865542 221 258888888887763
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.035 Score=36.52 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=4.9
Q ss_pred hcCcCCCeecccC
Q 007131 224 GNVLSVRFLSVAG 236 (617)
Q Consensus 224 ~~~~~L~~L~l~~ 236 (617)
..|++|+.|++++
T Consensus 21 ~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 21 SNLPNLETLNLSN 33 (44)
T ss_dssp TTCTTSSEEEETS
T ss_pred hCCCCCCEEEecC
Confidence 3333333333333
|
... |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.018 Score=56.31 Aligned_cols=71 Identities=20% Similarity=0.101 Sum_probs=33.0
Q ss_pred hCCCceEEEecCCCCccH--HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHH
Q 007131 101 RCMNLQKLRFRGAESADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVK 172 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~ 172 (617)
..++|+.|+|+.+....- -.....++|..|.+.+...|++-.- ..+.++..|+.|.++.-.|..+..+.+.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK-GAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh-hHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 345566666666543321 1112345555555555444555321 1223355666666653234344444443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.4 Score=52.91 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=121.4
Q ss_pred HHHhhCCHHHHHHHHhcCCHHHHHHHHHHHH-HhccchhhHHHHHHhCCHHHHHHHHhc---CCHHHHHHHHHHHHHhcC
Q 007131 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIA-NLSVNAKVAKAVAEEGGINILAVLARS---MNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~~~i~~L~~lL~~---~~~~~~~~a~~~L~nL~~ 498 (617)
.-..-|..|-++++|+++-.+++..-+-+=+ .||.++..+..+++.+|-.-++..|.. -+++-+.-|+-+|+.+..
T Consensus 507 LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 507 LALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred hhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 3346789999999999998887765554444 455687788888888887777777765 245778889999999987
Q ss_pred Cc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHH
Q 007131 499 GE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 499 ~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
+. -.+....+.+.+..-+..|.+ +..+-++.=++-||..|=. .+++|..-++.++...|..++.++- ++|+.+|+
T Consensus 587 nf~lGQ~acl~~~li~iCle~lnd--~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~v-pEVRaAAV 663 (1387)
T KOG1517|consen 587 NFKLGQKACLNGNLIGICLEHLND--DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPV-PEVRAAAV 663 (1387)
T ss_pred ccchhHHHhccccHHHHHHHHhcC--CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCcc-HHHHHHHH
Confidence 65 567777788888877888853 1245566667777777754 4566777788888999999998764 89999999
Q ss_pred HHHHHHhcc
Q 007131 577 RALANLAAH 585 (617)
Q Consensus 577 ~~L~~l~~~ 585 (617)
.||..+-..
T Consensus 664 FALgtfl~~ 672 (1387)
T KOG1517|consen 664 FALGTFLSN 672 (1387)
T ss_pred HHHHHHhcc
Confidence 999998763
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.018 Score=53.29 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=8.5
Q ss_pred HHHHHhcCCCCceEeecCC
Q 007131 197 INALAKLCPNLTDIGFLDC 215 (617)
Q Consensus 197 l~~l~~~~~~L~~L~l~~~ 215 (617)
+..++..||+|++|++++|
T Consensus 83 l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 83 LEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred ceehhhhCCceeEEeecCC
Confidence 3334444444444444444
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.21 Score=50.11 Aligned_cols=191 Identities=17% Similarity=0.084 Sum_probs=100.8
Q ss_pred hccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHH-H
Q 007131 388 MQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAV-A 466 (617)
Q Consensus 388 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i-~ 466 (617)
..+..+..+-.+|.++.++....-.+...+......+.-.|.- .+++.-++..|.+++.-+..++-.+... .
T Consensus 358 YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~f 430 (728)
T KOG4535|consen 358 YDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALGVYVLHPCLRQDVIF 430 (728)
T ss_pred hhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhceeEEeccchhhhHHH
Confidence 3444455677888888887655544433221221122222211 1223334555555555444465544332 2
Q ss_pred HhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-----cc---hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-----EE---HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 467 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-----~~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
-.++...++..|.+..-.+++.|++++.|++.. +. ....+. .-.+..++..-..+.....++..++..+|.
T Consensus 431 v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 431 VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 233455566666665667899999999999731 11 112221 123333333332223456789999999999
Q ss_pred HhccCCC----chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 539 NLAADDK----CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 539 ~l~~~~~----~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
|+...-+ ........+.+..+....-.+...+|+.+||.++.||-.+.
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 9975211 11111122333333332222224799999999999998743
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.72 Score=47.30 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=113.9
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcCCcchHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNR----LVAEEAAGGLWNLSVGEEHKG 504 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~~~~~~~ 504 (617)
....+.+.+.+++...+..|..-|..++.+......+....|+..|..+..+... ++....+.++..+-...-..-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3467888999999988888999999999999999999999999999999988544 556666666655543322222
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..+...+|...+.+... .-....+...|+..|-++..+++. +..+.+.--+..|+..+..++ ..++..|.+.+-.+-
T Consensus 164 ~~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n-~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN-QRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc-hHHHHHHHHHHHHHH
Confidence 22333445555554422 234456788899999999988775 556666666899999998886 788888887777776
Q ss_pred ccCC
Q 007131 584 AHGD 587 (617)
Q Consensus 584 ~~~~ 587 (617)
...+
T Consensus 242 ~~a~ 245 (713)
T KOG2999|consen 242 RKAP 245 (713)
T ss_pred hhCC
Confidence 5333
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.66 Score=51.30 Aligned_cols=197 Identities=17% Similarity=0.128 Sum_probs=134.2
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-C--CHHHHHHHHHHH
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-W--REGLQSEAAKAI 452 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~--~~~~~~~a~~~L 452 (617)
..-|| |..+++|++.-.+++..-+.+=..+-..+ .+. +..++..++-.-++..|.. . +++-+..|+-+|
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~SC------Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVL 581 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PSC------QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVL 581 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-chh------HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHH
Confidence 35577 99999999988787665555444433332 222 2356677777777777766 2 468899999999
Q ss_pred HHhccc-hhhHHHHHHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 453 ANLSVN-AKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 453 ~~ls~~-~~~~~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
+-+..+ +-+++...+.+-+..-+..|.++ .+-++..++-+|..|=.+. +.|-.=.+.++.+.|+.+|. ++.++|
T Consensus 582 Aviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls---D~vpEV 658 (1387)
T KOG1517|consen 582 AVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS---DPVPEV 658 (1387)
T ss_pred HHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc---CccHHH
Confidence 988874 44556665666577777777774 5667888888999996544 66776677899999999994 588999
Q ss_pred HHHHHHHHHHhccCC-----CchHH-----------HHHhCCHH----HHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 530 LERAAGALANLAADD-----KCSME-----------VALAGGVH----ALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~-----~~~~~-----------i~~~~~~~----~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.+|+.+|..+-.+. +.... +.-+..+. .++.++..+. +-++...+-+|.+...
T Consensus 659 RaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 659 RAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHHHHHHHHH
Confidence 999999999887642 22111 11112222 3444555553 6777777777777765
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.16 Score=52.42 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=100.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhccc---CCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVI---NDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~---~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~ 458 (617)
+..+..|++..++++..|+.....|+.. +.+. +.+...| ..|.+-|....+++.-....+++.+...
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~--------~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGET--------KELAKLG--NILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH--------HHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 7778888999999999999988887632 2111 2333334 3456667777888887777777766552
Q ss_pred hh---hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-c---hHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 459 AK---VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-E---HKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 459 ~~---~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
.. .+..+ .|.+|.|+.+|++....+..++...+..++... + .|+-+ ..--.|+++|. +-+.++++
T Consensus 677 ~~~~~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lk---s~nKeiRR 748 (975)
T COG5181 677 HRFRSMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLK---SWNKEIRR 748 (975)
T ss_pred hcccccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHH---HhhHHHHH
Confidence 22 12233 566899999999999999999999999988644 3 22222 23345777785 36778999
Q ss_pred HHHHHHHHhcc
Q 007131 532 RAAGALANLAA 542 (617)
Q Consensus 532 ~a~~~L~~l~~ 542 (617)
+|...+..++.
T Consensus 749 ~A~~tfG~Is~ 759 (975)
T COG5181 749 NATETFGCISR 759 (975)
T ss_pred hhhhhhhhHHh
Confidence 99999888874
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.43 Score=50.65 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=112.2
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+|.+...|++.++.+|.++...+..++....+..+. |+.+- ..-.|+++|++.+.++++.|...+..+|.
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~a----REWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak--- 954 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA----REWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK--- 954 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH----HHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence 388889999999999999999999998887776532 22222 22468899999999999999999987654
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.|+-.+.+..|++-|+..+...+....-+++-.+.. .|-...|-.+|.+-...+..++--++.+++.+
T Consensus 955 ---aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~---------c~pFtVLPalmneYrtPe~nVQnGVLkalsf~ 1022 (1172)
T KOG0213|consen 955 ---AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAET---------CGPFTVLPALMNEYRTPEANVQNGVLKALSFM 1022 (1172)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh---------cCchhhhHHHHhhccCchhHHHHhHHHHHHHH
Confidence 221122233344444433332222222222222111 23333333344332345556777777777766
Q ss_pred ccC--CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhc
Q 007131 541 AAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610 (617)
Q Consensus 541 ~~~--~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~ 610 (617)
-.. .-.+.-+- -..|.|-..|-+.+ .--+..|+.++.+|+....+ .|..+.+++||.
T Consensus 1023 FeyigemskdYiy--av~PlleDAlmDrD-~vhRqta~~~I~Hl~Lg~~g----------~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYIY--AVTPLLEDALMDRD-LVHRQTAMNVIKHLALGVPG----------TGCEDALIHLLN 1081 (1172)
T ss_pred HHHHHHHhhhHHH--HhhHHHHHhhcccc-HHHHHHHHHHHHHHhcCCCC----------cCcHHHHHHHHH
Confidence 431 11122221 13344445555443 56677799999999984333 355556665553
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.38 Score=50.89 Aligned_cols=105 Identities=13% Similarity=0.047 Sum_probs=80.0
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAI 506 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i 506 (617)
..+-++.+|.+..+-+|..|+.++..+.. .++ ++ ..++|.|++-|.++++.|+.+|+.+++.||. +|.+...
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 44678889999999999999999987765 222 22 2357999999999999999999999999995 5554433
Q ss_pred HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC
Q 007131 507 ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (617)
Q Consensus 507 ~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~ 545 (617)
.-|.+.++|.. +.+.=+....+..+++|+..++
T Consensus 219 ----LAP~ffklltt--SsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 219 ----LAPLFYKLLVT--SSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred ----ccHHHHHHHhc--cCCCeehHHHHHHHhhccccCc
Confidence 34667888863 4444577888899999986554
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.16 Score=44.41 Aligned_cols=147 Identities=20% Similarity=0.130 Sum_probs=95.1
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcC-CcchHHH
Q 007131 430 IRLLLDLAKS--WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSV-GEEHKGA 505 (617)
Q Consensus 430 i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~ 505 (617)
+..++..|.. ..+++|..|.-++..+- +..++...+. +...+. .+...+.+-...+..++..+=. .++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~--~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK--ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH--HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3456666654 46788888888888773 3333333221 333333 3333333355566667776653 3466666
Q ss_pred HH-hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchh-HHHHHHHHHHHH
Q 007131 506 IA-DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEG-VQEQAARALANL 582 (617)
Q Consensus 506 i~-~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~-~~~~a~~~L~~l 582 (617)
+. ..|.++.++.++.. ...+..++..++.+|..-|.+...|..+.+ .+++.|.+..+.++++. ++..|+-+|..|
T Consensus 81 l~~~eg~~~~l~~~~~~-~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASR-KSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH--CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 65 47788888888863 357888999999999998887777777776 56699999987655456 788888777653
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.72 Score=45.45 Aligned_cols=183 Identities=18% Similarity=0.079 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhC--CHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---cchHH
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVG---EEHKG 504 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~---~~~~~ 504 (617)
+...+..+.+.+...|+.|...+.++-......+.+.+.- -++.+.+.++.+..+=+..|+.++.-++.. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3445555666678889999988888776554444443322 267777888876654455565555555432 24455
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC-CCchHHHH-HhCCHHHHHH--HHhcC---------CchhH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVA-LAGGVHALVM--LARSC---------KFEGV 571 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~-~~~~~~~L~~--ll~~~---------~~~~~ 571 (617)
.+.+ ...|.|...+.+ .+....++..++.+|+-++.. ...-..+. -...+..+.. ..+.+ +...+
T Consensus 125 ei~~-~~~~~L~~~l~d-~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTD-SSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHH-HHHHHHHHHHhC-CccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 5555 477888888876 344566777777777777642 22212221 0113332222 22221 12457
Q ss_pred HHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
..+|..+-.-|...-+... ..... ...++.|+.+|.+++.+||
T Consensus 203 ~~aAL~aW~lLlt~~~~~~--~~~~~-~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSK--LEDLL-EEALPALSELLDSDDVDVR 245 (309)
T ss_pred HHHHHHHHHHHHhcCCHHH--HHHHH-HHHHHHHHHHhcCCCHHHH
Confidence 7776666555554322211 11211 3469999999999988876
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.47 E-value=3.3 Score=44.46 Aligned_cols=189 Identities=14% Similarity=0.065 Sum_probs=112.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCC-c--------ccCCchhHHHH---HhhCCHHHHHHHHhcCC-------H
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDE-N--------ASIDCGRAEAV---MKDGGIRLLLDLAKSWR-------E 442 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~-~--------~~~~~~~~~~i---~~~~~i~~Lv~lL~~~~-------~ 442 (617)
..-+.-++++++++...|...=.+++...-+ . .-..|. ...+ .-.+.+|.|+++|.+.+ .
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~-~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW 340 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS-SKYFARQALQDVVPVLLELLTKQDEDDDDDDW 340 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhHHHHHHHhHhhHHHHHHHHhCCCCcccccC
Confidence 5556666788888877776655544321100 0 000010 0112 23467788888886521 1
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHH----HhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHH
Q 007131 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL----ARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVD 517 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~l----L~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ 517 (617)
..-..|-.+|.-++. .++...+++.+.. +++++-.-++.|+.+...+-..+ ..+..=...+++|.++.
T Consensus 341 np~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~ 413 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN 413 (859)
T ss_pred cHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence 222333333332222 1112224444444 45577788899999999988766 45555566789999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCC-c-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDK-C-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
++. +.+--++..++|+|..++..-+ . -....-.+.+..++.-+.+ ++++-.++||++.+|+
T Consensus 414 lm~---D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 414 LMS---DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLA 476 (859)
T ss_pred Hhc---CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHH
Confidence 994 4666788999999999986433 1 1122222334445544444 4799999999999998
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.26 Score=38.93 Aligned_cols=69 Identities=19% Similarity=0.033 Sum_probs=49.8
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
...+++++..+.+.+..+|..||.+|.+++..-.......=...++.|.+++.+.++.|+..| ..|-+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 456789999999999999999999999998643321111113346788888888888877766 455443
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.2 Score=52.95 Aligned_cols=146 Identities=11% Similarity=0.089 Sum_probs=99.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK- 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~- 460 (617)
...+..|++.++.++.+|+..+..+|..-...-. -+.+...| ..|.+.|....+++.-....++..+...-.
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~e-----e~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGE-----EKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH-----HHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 6667778899999999999999988743111100 01233333 457788888889988777777666544211
Q ss_pred --hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-c---hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 461 --VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-E---HKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 461 --~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~---~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
....+ .+-+|.|+.+|++....+++++...+..++... + .|.-+ ..--.|+++|.. .+.+++++|.
T Consensus 875 ~km~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLka---hkK~iRRaa~ 946 (1172)
T KOG0213|consen 875 TKMTPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKA---HKKEIRRAAV 946 (1172)
T ss_pred cccCCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH---HHHHHHHHHH
Confidence 11112 345799999999999999999999999998543 3 23322 233457777753 5668999999
Q ss_pred HHHHHhcc
Q 007131 535 GALANLAA 542 (617)
Q Consensus 535 ~~L~~l~~ 542 (617)
..+..++.
T Consensus 947 nTfG~Iak 954 (1172)
T KOG0213|consen 947 NTFGYIAK 954 (1172)
T ss_pred hhhhHHHH
Confidence 88888874
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.1 Score=49.77 Aligned_cols=191 Identities=13% Similarity=0.096 Sum_probs=116.5
Q ss_pred HHHhhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc----CC----HHHHHHH
Q 007131 423 AVMKDGGIRLLLDLAKSW-----REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS----MN----RLVAEEA 489 (617)
Q Consensus 423 ~i~~~~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~----~~----~~~~~~a 489 (617)
.+.+.|++..++.++.+- ..+.....+.+|..++.-+.+|..+.+.|+++.|+..|.. .. +++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 467889999999999763 3567777888999999999999999999999999988863 33 4566666
Q ss_pred HHHHHHhcCCcc---h--HHHHHhcC-----C---hHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCC
Q 007131 490 AGGLWNLSVGEE---H--KGAIADAG-----G---VKALVDLIFK-WSSGGDGVLERAAGALANLAADDKCSMEVALAGG 555 (617)
Q Consensus 490 ~~~L~nL~~~~~---~--~~~i~~~g-----~---i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~ 555 (617)
..++-.|..... . -....... . +..+++.+.. ....++.+....+++|-+|+..++.+...+-. .
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~ 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-H 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-H
Confidence 655555543221 1 11111112 2 4445555532 12246789999999999999887775555432 2
Q ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHHHhccCCCC---CCccccccccCcHHHHHHHhcCCCC
Q 007131 556 VHALVMLARSCKF-EGVQEQAARALANLAAHGDSN---SNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 556 ~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
+...+++=.-+.. ..--...+..++.++..-+.+ ...+..+++.|+++..++.+....+
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 2332232211100 000122355555555433222 2345677788999988887765443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.2 Score=39.56 Aligned_cols=90 Identities=18% Similarity=0.087 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHH
Q 007131 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLA 563 (617)
Q Consensus 486 ~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll 563 (617)
+..+..+|+..+..-.....-.-...+++++..+ .+++..+++.|+.+|.|++..-. ..+.. ...+..|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~---~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF---DDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3445556666653322111111134778888888 56899999999999999985433 33332 23456667776
Q ss_pred hcCCchhHHHHHHHHHHHH
Q 007131 564 RSCKFEGVQEQAARALANL 582 (617)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~l 582 (617)
.+++ +.|+..| ..|-++
T Consensus 78 ~D~d-~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 78 ADPD-ENVRSAA-ELLDRL 94 (97)
T ss_pred cCCc-hhHHHHH-HHHHHH
Confidence 6664 6666655 555554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.1 Score=48.20 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=109.4
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
++..+-++|.+.+.+++.-|+..|..+...++. .+..+. ..+++.|+++|..+++.|+..+..|....
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~----------avqrHr--~tIleCL~DpD~SIkrralELs~~lvn~~ 381 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPT----------AVQRHR--STILECLKDPDVSIKRRALELSYALVNES 381 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcH----------HHHHHH--HHHHHHhcCCcHHHHHHHHHHHHHHhccc
Confidence 334555555555556666666666554322221 111221 57788888888889999988888776555
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CcchHHHH-------------HhcCChHHHHHHHhhcC-
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV--GEEHKGAI-------------ADAGGVKALVDLIFKWS- 523 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~--~~~~~~~i-------------~~~g~i~~L~~ll~~~~- 523 (617)
..+.. ++.|+..|.+.+++.+...+.-+..++. .++++..| +...++..++.++..++
T Consensus 382 Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~ 455 (866)
T KOG1062|consen 382 NVRVM------VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQ 455 (866)
T ss_pred cHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCc
Confidence 54443 3557777877777777777777777763 34433222 23345556666665421
Q ss_pred ---------------------CCCHHHHHHHHHHHHHhc---cCC---CchHHHHHhCCHHHHHHHHhc-CCchhHHHHH
Q 007131 524 ---------------------SGGDGVLERAAGALANLA---ADD---KCSMEVALAGGVHALVMLARS-CKFEGVQEQA 575 (617)
Q Consensus 524 ---------------------~~~~~~~~~a~~~L~~l~---~~~---~~~~~i~~~~~~~~L~~ll~~-~~~~~~~~~a 575 (617)
.+.+.+..-|.||++.=. .++ +.-..+.+...+..+.+++.+ ..+..++..|
T Consensus 456 e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~ya 535 (866)
T KOG1062|consen 456 ELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYA 535 (866)
T ss_pred chhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHH
Confidence 123344455555555432 111 112233344556677776643 2237889999
Q ss_pred HHHHHHHhcc
Q 007131 576 ARALANLAAH 585 (617)
Q Consensus 576 ~~~L~~l~~~ 585 (617)
..||..|+..
T Consensus 536 l~Al~KLSsr 545 (866)
T KOG1062|consen 536 LTALLKLSSR 545 (866)
T ss_pred HHHHHHHHhh
Confidence 9999999973
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.59 Score=49.87 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=99.6
Q ss_pred HhhCCHHHHHHHH----hcCCHHHHHHHHHHHHHhccchh-hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 007131 425 MKDGGIRLLLDLA----KSWREGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG 499 (617)
Q Consensus 425 ~~~~~i~~Lv~lL----~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~ 499 (617)
.+...++.++.++ ++++..-++.|+-+++.+-..++ .+..-...+++|.+++++.++.--++..++|+|..++..
T Consensus 357 ~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 357 VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 3444455555555 45677788888888887766544 444444577899999999977777889999999999853
Q ss_pred -cchHH-HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC--CCc----hHHHHHhCCHHHHHH-HHh-----c
Q 007131 500 -EEHKG-AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKC----SMEVALAGGVHALVM-LAR-----S 565 (617)
Q Consensus 500 -~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~--~~~----~~~i~~~~~~~~L~~-ll~-----~ 565 (617)
++.+. .....+.++.++.-| .+.+.+..+++|++.+|+.. +.. ...... ...+.++. +++ +
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL----~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~d 511 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGL----NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRAD 511 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHh----hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccc
Confidence 32111 111123444455555 36789999999999999841 111 111222 23334443 443 2
Q ss_pred CCchhHHHHHHHHHHHHhccCC
Q 007131 566 CKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
++...+|..|-.+|..|-..++
T Consensus 512 gnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 512 GNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred cchhhHHHHHHHHHHHHHHcCc
Confidence 3345788888889888876444
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.17 Score=37.33 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCC
Q 007131 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGG 555 (617)
Q Consensus 486 ~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~ 555 (617)
++.|.+|+.+++..+....-+.+.+.++.++++.+ .++...++-.|..+|.-++...++.+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~--~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAE--NSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHH--hCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 56799999999998877777778899999999997 467778999999999999999888888777653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.046 Score=56.46 Aligned_cols=171 Identities=20% Similarity=0.224 Sum_probs=106.7
Q ss_pred EEEecCCCC-ccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcC-CCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCee
Q 007131 107 KLRFRGAES-ADSIIHLQARNLRELSGDYCRKITDATLSVIVARH-EALESLQLGPDFCERITSDAVKAIALCCPKLKKL 184 (617)
Q Consensus 107 ~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~-~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L 184 (617)
.+.+..+.. .+.......+.+..|++.+.. +++ +....... ++|+.|+++ .+.+.. +..-...+++|+.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~---~N~i~~--l~~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLS---DNKIES--LPSPLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-ccc--Cccccccchhhccccccc---ccchhh--hhhhhhcccccccc
Confidence 456655554 233333355788888888765 444 23333334 389999996 334433 21223458999999
Q ss_pred eccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 185 RLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 185 ~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+++++ .+++ +.......++|+.|+++++ .+++ ... .....|++|.++++..+.. ......++++..+.+..
T Consensus 169 ~l~~N-~l~~--l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 169 DLSFN-DLSD--LPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSN 241 (394)
T ss_pred ccCCc-hhhh--hhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCC
Confidence 99988 5544 2333225689999999998 4555 222 3556699999998743322 22234567788887777
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+.+... ...+..++.++.|++++|.+....
T Consensus 242 n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 242 NKLEDL--PESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred ceeeec--cchhccccccceeccccccccccc
Confidence 655431 345567888999999988755444
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.044 Score=54.49 Aligned_cols=37 Identities=27% Similarity=0.637 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHccCC-hHhHHHHhhhchhHHHhhc
Q 007131 39 DWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGA 75 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~-~~~~~~~~~vck~w~~~~~ 75 (617)
.|++||+|+|..|..+|+ .-|+++.+.||+.||....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 599999999999999996 7899999999999998644
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.4 Score=47.28 Aligned_cols=141 Identities=18% Similarity=0.124 Sum_probs=102.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++..+...+-+.++-+-..+.+-|.... -...+++..+++=..++++.+|..|.+.+.-+-...
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P------------~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-- 117 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKP------------DLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-- 117 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCc------------hHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH--
Confidence 777777777777777777777777653322 233456677777777788999988877776543222
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
+.+. .+.++.+.+++.++.++..|+-...++=.. ........|.++.|-+++ .+.++.+..+|+.+|..+.
T Consensus 118 ---i~ey-~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~~~~~~~~gl~~~L~~ll---~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 118 ---ITEY-LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--DPDLVEDSGLVDALKDLL---SDSNPMVVANALAALSEIH 188 (734)
T ss_pred ---HHHH-HHHHHHHhccCCChhHHHHHHHHHHHhhcC--ChhhccccchhHHHHHHh---cCCCchHHHHHHHHHHHHH
Confidence 1111 357899999999999999888887777433 455566688999999999 4688899999999999998
Q ss_pred cCCC
Q 007131 542 ADDK 545 (617)
Q Consensus 542 ~~~~ 545 (617)
....
T Consensus 189 e~~~ 192 (734)
T KOG1061|consen 189 ESHP 192 (734)
T ss_pred HhCC
Confidence 6543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.051 Score=48.29 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=37.5
Q ss_pred cCCCCceEeecCCCCCCH--HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHH--HHHHhcC
Q 007131 203 LCPNLTDIGFLDCLNVDE--VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITI--SRLLTSS 277 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l--~~~~~~~ 277 (617)
..++|.+|.+..| .++. ..+ ..+++|+.|.+.+|.-..-..+..+ ..||.|++|.+-+|+++...= ...+..+
T Consensus 62 ~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEEec
Confidence 3455666666655 3333 122 3445666666665422111112222 245666666666655433221 1122235
Q ss_pred CCCCEEEcc
Q 007131 278 KSLKVLCAL 286 (617)
Q Consensus 278 ~~L~~L~l~ 286 (617)
|+|++||..
T Consensus 140 p~l~~LDF~ 148 (233)
T KOG1644|consen 140 PSLRTLDFQ 148 (233)
T ss_pred CcceEeehh
Confidence 555555554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.091 Score=57.48 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=59.6
Q ss_pred ccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCC
Q 007131 127 LRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPN 206 (617)
Q Consensus 127 L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 206 (617)
+..|+|+++. ++.. +..-...+++|+.|+|+. + .+... +......+++|+.|+|+++ .++... ......+++
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~--N-~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~i-P~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSG--N-SIRGN-IPPSLGSITSLEVLDLSYN-SFNGSI-PESLGQLTS 491 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCC--C-cccCc-CChHHhCCCCCCEEECCCC-CCCCCC-chHHhcCCC
Confidence 6677777665 3211 222334578888888852 3 34322 2222344788888888887 554322 222335688
Q ss_pred CceEeecCCCCCCH---HHHhc-CcCCCeecccCCCC
Q 007131 207 LTDIGFLDCLNVDE---VALGN-VLSVRFLSVAGTSN 239 (617)
Q Consensus 207 L~~L~l~~~~~~~~---~~l~~-~~~L~~L~l~~~~~ 239 (617)
|+.|++++|. ++. ..+.. ..++..+++.+|..
T Consensus 492 L~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 492 LRILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCEEECcCCc-ccccCChHHhhccccCceEEecCCcc
Confidence 8888888874 332 23333 34667777777643
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.21 Score=53.43 Aligned_cols=184 Identities=16% Similarity=0.127 Sum_probs=119.2
Q ss_pred HHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHH-HhccchhhHHHHHHhCCHHHHHHHHhcCCHHH-HHHHHHHHHHhcCC
Q 007131 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIA-NLSVNAKVAKAVAEEGGINILAVLARSMNRLV-AEEAAGGLWNLSVG 499 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~-~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~-~~~a~~~L~nL~~~ 499 (617)
...+..|+.+.|+++.....+..+..+..+|. .++..-+.. ...++++...+....... ...++.++.||+..
T Consensus 498 ~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~ 572 (748)
T KOG4151|consen 498 AKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTNLASI 572 (748)
T ss_pred CccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCc
Confidence 35678899999999998888888888888888 333321111 223455555554433222 45788999999865
Q ss_pred c-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHH-hCCHHHHHHHHhcCCchhHHHHHH
Q 007131 500 E-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVAL-AGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 500 ~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
+ ..|..+...-+++.+-.++ ..+++..++.++.++.||...+.. ...+++ ....+....++... .++...+++
T Consensus 573 s~s~r~~i~ke~~~~~ie~~~---~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a 648 (748)
T KOG4151|consen 573 SESDRQKILKEKALGKIEELM---TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGA 648 (748)
T ss_pred chhhHHHHHHHhcchhhHHHh---hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhcc
Confidence 5 5677788877777766666 358889999999999999987776 334444 33455555566554 367777777
Q ss_pred HHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+++..++....+.-.+ +..-....+.++.++.+++.++
T Consensus 649 ~a~a~I~sv~~n~c~~--~~~~~~~~e~~~~~i~~~~~~~ 686 (748)
T KOG4151|consen 649 GALAAITSVVENHCSR--ILELLEWLEILVRAIQDEDDEI 686 (748)
T ss_pred ccccchhhcchhhhhh--HHHhhcchHHHHHhhcCchhhh
Confidence 7777565433321111 2222345677777777766554
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.77 Score=49.99 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=99.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++.+.+.+.++++-.-..|.+.+...++ ..+. ++..+.+=++++|+.+|..|.+.+.-+=.
T Consensus 58 ~dViK~~~trd~ElKrL~ylYl~~yak~~P~---------~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~---- 121 (757)
T COG5096 58 PDVIKNVATRDVELKRLLYLYLERYAKLKPE---------LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV---- 121 (757)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhccCHH---------HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh----
Confidence 6667777777788877777777776544332 1222 45677777888999999888888876511
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
. .+. ...++++.+++.++++.|+..|+-|+.++=.- .+.-..+.|.+..+..++. +.++.+..+|+.+|..+.
T Consensus 122 ~-el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~---D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 122 K-ELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVA---DSDPIVIANALASLAEID 194 (757)
T ss_pred H-HHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhh---CCCchHHHHHHHHHHHhc
Confidence 1 121 22478899999999999999999999988532 2334455677888888884 588899999999999986
Q ss_pred cC
Q 007131 542 AD 543 (617)
Q Consensus 542 ~~ 543 (617)
..
T Consensus 195 ~e 196 (757)
T COG5096 195 PE 196 (757)
T ss_pred hh
Confidence 54
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.4 Score=43.48 Aligned_cols=169 Identities=19% Similarity=0.187 Sum_probs=107.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--h
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--A 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~ 459 (617)
..++..+++.++.+|+.|+..|.-.+..+.+ ++ ...++.+...++.+++.++..|+.++.-+... .
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~-----------~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKE-----------LA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChH-----------HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 3445778899999999999999877644422 22 22366788888777899999999999988762 1
Q ss_pred hhHHH-------HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHH
Q 007131 460 KVAKA-------VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLE 531 (617)
Q Consensus 460 ~~~~~-------i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 531 (617)
+.-.. ......++.+.+.+.+.+++++..|+..++.|-....... ....+..|+-+-.+ ...++..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 21111 1122336778888888999999999999998865432222 12334444444433 1123345555
Q ss_pred HHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhc
Q 007131 532 RAAGALANLAADDKCSMEVALAGGVHALVMLARS 565 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~ 565 (617)
--...+-..|.........+...+++.+-.+...
T Consensus 175 ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 5555566667665554555555666777666654
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.7 Score=41.51 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=92.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcC-ChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 007131 474 LAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAG-GVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL 552 (617)
Q Consensus 474 L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g-~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 552 (617)
|-++++.-++-++..|+.+|.++...++.|..+-.++ .-..++++++. +-+..+++.+.+-++|.++.++...+.+-.
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n-~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K 232 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN-YVGVKQLQYNSLIIIWILTFSKECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3345555555678899999999999999998876644 55668888876 556678999999999999998877644432
Q ss_pred -hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHH
Q 007131 553 -AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605 (617)
Q Consensus 553 -~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L 605 (617)
...+.-++.+.+....+++-..+++++.|++...+. ......+...++.+.+
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK-~~I~~~lll~~~~k~v 285 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPK-GYIFSPLLLNDISKCV 285 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chhhhhHhhcchHHHH
Confidence 235667777777655578899999999999873332 2233444433333333
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.11 Score=51.97 Aligned_cols=157 Identities=20% Similarity=0.129 Sum_probs=95.1
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc----c-hh---hHHHHHHhCC-HHHHHHHHh---cCCHHHHHHHHH
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV----N-AK---VAKAVAEEGG-INILAVLAR---SMNRLVAEEAAG 491 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~----~-~~---~~~~i~~~~~-i~~L~~lL~---~~~~~~~~~a~~ 491 (617)
..-..+...+...|.+..-..|+.+++.+.|++. + +. ..+.+ .|. +..+.+.-. ..+..|..+|..
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~--sg~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF--SGLLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH--HHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 3455666777777777777889999999999986 1 11 12222 111 233333321 245678999999
Q ss_pred HHHHhcCCcc----hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH--HHhCCHHHHHHHHhc
Q 007131 492 GLWNLSVGEE----HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV--ALAGGVHALVMLARS 565 (617)
Q Consensus 492 ~L~nL~~~~~----~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i--~~~~~~~~L~~ll~~ 565 (617)
+|.|+..--+ ..-.....|.+..+....- -....+++.+|+.++.||-.++..+-+- .....++.|..++.+
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~--~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVL--TEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHHhccccee--cccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 9999975321 0011111223333222211 2245689999999999999877552211 222346777787766
Q ss_pred CCchhHHHHHHHHHHHHhc
Q 007131 566 CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 566 ~~~~~~~~~a~~~L~~l~~ 584 (617)
..+-+++.+|+++|.--..
T Consensus 585 ~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 585 CKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred hccceEeehhhhhhcCCCC
Confidence 5558999999999876553
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=4.2 Score=37.60 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=98.9
Q ss_pred hccCCccchHHHHhcChH-HHHHhhcc-----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh
Q 007131 365 AESNPQGLDDFWLKQGAG-LLLSLMQS-----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~-~l~~~l~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 438 (617)
..+.+..... +..+.+| .+..+|.. ..+-.|..+++++..|...++..+ -..+...+.+|..++...
T Consensus 106 vASHpdTr~~-FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV------i~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 106 VASHPDTRRA-FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV------IRFLLTTEIVPLCLRIME 178 (293)
T ss_pred HhcCcchHHH-HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH------HHHHHHhhhHHHHHHHHh
Confidence 3344444444 4577774 45556642 457789999999999987776542 146678999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccchhhHHHHHHh-------CC-HH-HHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 439 SWREGLQSEAAKAIANLSVNAKVAKAVAEE-------GG-IN-ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 439 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-------~~-i~-~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
.+++..+..|+.++..+-.++.+-..+.+. +- +. .+..+.+.+++.+.+.+..+..+|+.++..|..+..
T Consensus 179 ~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 179 SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999998888764444331 11 22 233344447888999999999999999988877764
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.14 Score=30.71 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.60 E-value=2 Score=44.90 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=103.2
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+|.+...|++.+..++.+....+..++....+.... |+.+. .--.|+++|++.+.++++.|...+..+|.
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~----rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~--- 759 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV----REWMR---ICFELVDSLKSWNKEIRRNATETFGCISR--- 759 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH----HHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh---
Confidence 389999999999999999999999888887776432 12222 12468899999999999999999887654
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.|+-.+.+..|++-|+..+...+..+.-++.-.+.. .|-...|-.+|.+-...+..++.-++.+++.+
T Consensus 760 ---aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~---------cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 760 ---AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEY---------CGPFSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred ---hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---------cCchhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 221122233344444443333332222222222110 23333333344332334556666666666665
Q ss_pred ccCC--CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 541 AADD--KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 541 ~~~~--~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
-..- ..+.-+- -..|.|-..+.+.+ +--+..|+.++.+|+....+
T Consensus 828 Feyig~~s~dYvy--~itPlleDAltDrD-~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 828 FEYIGQASLDYVY--SITPLLEDALTDRD-PVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHHHHHHHHHH--HhhHHHHhhhcccc-hHHHHHHHHHHHHHhcCCCC
Confidence 4211 1111111 12233444554443 56677788999999875443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.1 Score=41.92 Aligned_cols=172 Identities=12% Similarity=0.020 Sum_probs=112.7
Q ss_pred HHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhcc--chhhHHHHHHhCC
Q 007131 398 RAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-----EGLQSEAAKAIANLSV--NAKVAKAVAEEGG 470 (617)
Q Consensus 398 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~ls~--~~~~~~~i~~~~~ 470 (617)
+|+..+..+|++ |+.|..+.++...--|..+|...+ +.+|-.+.++++.+.. +.+.-..+.+.+.
T Consensus 69 naLaLlQ~vAsh--------petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEi 140 (262)
T PF04078_consen 69 NALALLQCVASH--------PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEI 140 (262)
T ss_dssp HHHHHHHHHHH---------TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTH
T ss_pred HHHHHHHHHHcC--------hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhch
Confidence 455555666554 444578888888877888887543 4578999999999998 4445566667878
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH-------HHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHK-------GAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~-------~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
+|..++.++.+++-.+..|.-++..+-.++.+- +.+.. ..++..++.-|. ...++.+.+.+.+|-.-|+.
T Consensus 141 iplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~--~~pS~RLLKhIIrCYlRLsd 218 (262)
T PF04078_consen 141 IPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV--KQPSPRLLKHIIRCYLRLSD 218 (262)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH--HS--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc--cCCChhHHHHHHHHHHHHcc
Confidence 999999999988877778888887776655322 22222 234555555554 35688999999999999999
Q ss_pred CCCchHHHHHhCCHHHHH-----HHHhcCCchhHHHHHHHHHHHH
Q 007131 543 DDKCSMEVALAGGVHALV-----MLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 543 ~~~~~~~i~~~~~~~~L~-----~ll~~~~~~~~~~~a~~~L~~l 582 (617)
++..+.++.+ .....|- .+++ +++.++..-...+.|+
T Consensus 219 nprar~aL~~-~LP~~Lrd~~f~~~l~--~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 219 NPRAREALRQ-CLPDQLRDGTFSNILK--DDPSTKRWLQQLLSNL 260 (262)
T ss_dssp STTHHHHHHH-HS-GGGTSSTTTTGGC--S-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-hCcHHHhcHHHHHHHh--cCHHHHHHHHHHHHHh
Confidence 9999888875 2211111 1111 2367777777777766
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.022 Score=50.54 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCH-HHHHHHHhcCCCCCEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP-ITISRLLTSSKSLKVL 283 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~l~~~~~~~~~L~~L 283 (617)
.....+|+++|.......+..++.|++|.+++| .|+.-. ..+...+|+|..|.+.+|.+-. ..+.. +..||+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcch-hccCCcccee
Confidence 455666666664444455666677777777665 443221 2233445667777777754321 11112 2346777777
Q ss_pred EccCCCCCChh
Q 007131 284 CALNCPVLEEE 294 (617)
Q Consensus 284 ~l~~c~~~~~~ 294 (617)
.+-+++.....
T Consensus 119 tll~Npv~~k~ 129 (233)
T KOG1644|consen 119 TLLGNPVEHKK 129 (233)
T ss_pred eecCCchhccc
Confidence 77766644444
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.53 Score=44.29 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHhc-cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHH
Q 007131 526 GDGVLERAAGALANLA-ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~ 604 (617)
.......|+.+|.-++ -+++.|..+.+..++..++.++.......++.++..+|..+..+.+. +...+.+.+|+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~---N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPE---NQRDFEELNGLST 180 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChH---HHHHHHHhCCHHH
Confidence 4456777889999998 57788999999999999999996554589999999999999887665 5667778999999
Q ss_pred HHHHhcCCC
Q 007131 605 LVQLTRSPH 613 (617)
Q Consensus 605 L~~ll~~~~ 613 (617)
++.++++.+
T Consensus 181 v~~llk~~~ 189 (257)
T PF08045_consen 181 VCSLLKSKS 189 (257)
T ss_pred HHHHHcccc
Confidence 999999864
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.025 Score=58.74 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=25.3
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGT 237 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~ 237 (617)
+++|++|+++++ .|+. +..+. .++.|+.|++.+|..-+-.++..++.|+.+++++|
T Consensus 117 ~~~L~~L~ls~N-~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 117 LVNLQVLDLSFN-KITK--LEGLS-TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred hhcchheecccc-cccc--ccchh-hccchhhheeccCcchhccCCccchhhhcccCCcc
Confidence 555555555554 3322 11111 22345555555552222234444555555555554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.0085 Score=62.21 Aligned_cols=175 Identities=19% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITD-ATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
+.++..|++.++....-.- ...+++|++|++++.. |++ .++.. ++.|+.|++.+ +.+++. ..+ ..++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~----l~~L~~L~l~~---N~i~~~--~~~-~~l~ 162 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLST----LTLLKELNLSG---NLISDI--SGL-ESLK 162 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhh----ccchhhheecc---Ccchhc--cCC-ccch
Confidence 3455556555544332221 2345666666666554 332 11222 33366666642 123221 111 1145
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC--CCCe
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP--KLVG 257 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~--~L~~ 257 (617)
+|+.++++++ .++.-.-.. ...+++++.+.+.++......++..+..+..+++..+....-.++.. .+ +|+.
T Consensus 163 ~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~----~~~~~L~~ 236 (414)
T KOG0531|consen 163 SLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNE----LVMLHLRE 236 (414)
T ss_pred hhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCccc----chhHHHHH
Confidence 5666666655 232211100 23445666666666533333344434444443443331111111111 11 2677
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++++++.+.... ..+..++++..+++.++....-..
T Consensus 237 l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 237 LYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred HhcccCcccccc--ccccccccccccchhhcccccccc
Confidence 777776554321 223456777777777666554443
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=4.2 Score=41.31 Aligned_cols=130 Identities=19% Similarity=0.155 Sum_probs=97.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccchh----hHHHHHHhCCHHHHHHHHhcCC------HHH-HHHHHHHHHHhcCCcc
Q 007131 433 LLDLAKSWREGLQSEAAKAIANLSVNAK----VAKAVAEEGGINILAVLARSMN------RLV-AEEAAGGLWNLSVGEE 501 (617)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~~i~~L~~lL~~~~------~~~-~~~a~~~L~nL~~~~~ 501 (617)
+..+++..+++-|-.|.-.+..+..+++ +|..+.+.=|.+.+=+++...+ +.| +.-+..+|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5566666778888888888888877544 5777888888888888887622 233 4567788888888885
Q ss_pred --hHHHHHhcCChHHHHHHHhhcCCCC----HHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHh
Q 007131 502 --HKGAIADAGGVKALVDLIFKWSSGG----DGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 502 --~~~~i~~~g~i~~L~~ll~~~~~~~----~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~ 564 (617)
....++ +.||.|...+...-+.+ --+...+-.||..++..+.+...++..|+++.+.++-.
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 345555 47999999997622222 23888999999999999999999999999999987543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.16 Score=30.43 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
+|.+++++.+++++|+..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.09 E-value=4.1 Score=42.33 Aligned_cols=197 Identities=17% Similarity=0.144 Sum_probs=110.7
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hh-C--CHHHHHHHHhcC-------------
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KD-G--GIRLLLDLAKSW------------- 440 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~-~--~i~~Lv~lL~~~------------- 440 (617)
.+.++.|--+|.+.....|..|.++|..||...+...+.-....+.++ +. . ..=++..+|+.+
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~ 381 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIP 381 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHH
Confidence 444577788888888888999999999998877665433111112222 10 0 112333334333
Q ss_pred ------CHHHHHHHHHHHHHhccchhh---------HHHHHHhCC-------HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 007131 441 ------REGLQSEAAKAIANLSVNAKV---------AKAVAEEGG-------INILAVLARSMNRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 441 ------~~~~~~~a~~~L~~ls~~~~~---------~~~i~~~~~-------i~~L~~lL~~~~~~~~~~a~~~L~nL~~ 498 (617)
++..+..+..+++.|+..-+. -..+.+.|| |+++.+++ +..|+.++.|+..|+....
T Consensus 382 sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~-~~~p~skEraLe~LC~fIE 460 (898)
T COG5240 382 SFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAM-ENDPDSKERALEVLCTFIE 460 (898)
T ss_pred HHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-hhCchHHHHHHHHHHHHHh
Confidence 233445555666666652221 123345666 33344444 2566788888888877766
Q ss_pred CcchHHHHHhcCChHHHHHHHhh-cC-----------------CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHH
Q 007131 499 GEEHKGAIADAGGVKALVDLIFK-WS-----------------SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560 (617)
Q Consensus 499 ~~~~~~~i~~~g~i~~L~~ll~~-~~-----------------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~ 560 (617)
+.++-+..++ ++.+|.+ +| -++.-++.+|+.||...+.+.+.. +........|-
T Consensus 461 Dcey~~I~vr------IL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lk 532 (898)
T COG5240 461 DCEYHQITVR------ILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALK 532 (898)
T ss_pred hcchhHHHHH------HHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHH
Confidence 6554433322 1222221 01 134567788888888777654331 11212223455
Q ss_pred HHHhcCCchhHHHHHHHHHHHHhc
Q 007131 561 MLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+++.+.+ ++++..|..+|.++-.
T Consensus 533 RclnD~D-deVRdrAsf~l~~~~~ 555 (898)
T COG5240 533 RCLNDQD-DEVRDRASFLLRNMRL 555 (898)
T ss_pred HHhhccc-HHHHHHHHHHHHhhhh
Confidence 6777765 8999999999999963
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.1 Score=29.07 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=11.0
Q ss_pred CCCCCeeeccCccCCcHHHHHHHH
Q 007131 178 CPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
|++|++|+|++| .++++++..++
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 345566666655 45555555443
|
... |
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.74 Score=48.32 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=80.2
Q ss_pred hcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 378 KQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 378 ~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls 456 (617)
+.|. .+++.-+..+.-+++..|+..++.|+..+..- ...++..|+.++.++...+|..|..+|..++
T Consensus 371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F------------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF------------AVRALDFLVDMFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4444 78888888888899999999999998766543 1235678999999999999999999999998
Q ss_pred cchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH
Q 007131 457 VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 457 ~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
.+-..++. -++.++..|.+.+++++++....|.+.-.....+
T Consensus 439 ~~l~i~ee-----ql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~ 480 (823)
T KOG2259|consen 439 VHLAIREE-----QLRQILESLEDRSVDVREALRELLKNARVSDLEC 480 (823)
T ss_pred HHheecHH-----HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH
Confidence 76332222 2566777777777777777776666655444333
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.29 Score=39.89 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 471 INILAVLAR-SMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 471 i~~L~~lL~-~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
++.|+++|. +.++.+..-||.=|+.++. .|..|..+-+.|+-..++.+| .+++++++.+|+.|+..+-
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm---~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELM---NHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHT---S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHh---cCCCHHHHHHHHHHHHHHH
Confidence 788999994 4567778888888888884 567787777788889999999 4689999999999987763
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.07 Score=52.49 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred HHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccC-CcHHHHHHHHhcCCCCceEeecCC--CCCCHHH
Q 007131 146 IVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRD-ICGDAINALAKLCPNLTDIGFLDC--LNVDEVA 222 (617)
Q Consensus 146 i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~-i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~ 222 (617)
..+.+++|..|+|+. ++-.+-...+. ....|++|+++.++. .-.+++.. ...++.+-.+++ ..+...+
T Consensus 430 ~l~~l~kLt~L~L~N----N~Ln~LP~e~~-~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSN----NLLNDLPEEMG-SLVRLQTLNLSFNRFRMLPECLYE----LQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred HHHhhhcceeeeccc----chhhhcchhhh-hhhhhheecccccccccchHHHhh----HHHHHHHHhccccccccChHH
Confidence 345578888888852 22221111222 245588888887621 11122211 123444444433 2344567
Q ss_pred HhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCC
Q 007131 223 LGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG 266 (617)
Q Consensus 223 l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 266 (617)
+..+.+|..|++.++. + +.+..+.++|.+|++|++++|.+.
T Consensus 501 l~nm~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCc-h--hhCChhhccccceeEEEecCCccC
Confidence 8999999999998862 2 445677789999999999998764
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=47.96 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=115.3
Q ss_pred HHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhH-HHHHH-hCCHHHH
Q 007131 397 ERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVA-KAVAE-EGGINIL 474 (617)
Q Consensus 397 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~-~~i~~-~~~i~~L 474 (617)
..++.+++||++.++..+ +.+...-+++.+-.++...++-.|+.++..+.||..++..- ..+++ ..+.+..
T Consensus 560 ~E~L~altnLas~s~s~r-------~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w 632 (748)
T KOG4151|consen 560 FEALEALTNLASISESDR-------QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLW 632 (748)
T ss_pred HHHHHHhhcccCcchhhH-------HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHH
Confidence 468889999987766553 55777666777777788889999999999999999988753 44444 5567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCcc-hHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHH
Q 007131 475 AVLARSMNRLVAEEAAGGLWNLSVGEE-HKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVA 551 (617)
Q Consensus 475 ~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~ 551 (617)
...+....+....++++++.-++...+ .+..+.+ ..+...++.++. +++.+++...+.+..|+.... +-...+.
T Consensus 633 ~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~---~~~~~~qhrgl~~~ln~~~~~~ei~~~~~ 709 (748)
T KOG4151|consen 633 NLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQ---DEDDEIQHRGLVIILNLFEALFEIAEKIF 709 (748)
T ss_pred HHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhc---CchhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 777777666777788888886765543 3442443 567777888884 578889988888888854322 2233444
Q ss_pred HhCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 552 LAGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 552 ~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
....++.+...-.- +....++.+...|..
T Consensus 710 ~~~~~~~l~~~~~~-~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 710 ETEVMELLSGLQKL-NRAPKREDAAPCLSA 738 (748)
T ss_pred cchHHHHHHHHHHh-hhhhhhhhhhhHHHH
Confidence 44444444432221 224455555555544
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=92.16 E-value=8.7 Score=38.22 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=140.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc--CCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--WREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.-|..-+-+.+..++.+..++.+........ -....+... .|.++..|-. +++++-..+-.+|+.++.++
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~--p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSP--PTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB----HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCC--chHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 67777777777888999999999987665444210 012233322 1344444433 26778888888999999999
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCcchHHHHHhc---CChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL-SVGEEHKGAIADA---GGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL-~~~~~~~~~i~~~---g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.....+.....+..+.+....++=++...|..++..+ +.++.....+... ..+...-.+| .+++--.++.++.
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll---~s~NYvtkrqslk 231 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL---ESSNYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC---T-SSHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc---cCCCeEeehhhHH
Confidence 9888888887888999999889999999999999886 4555666666653 3445566677 4578789999999
Q ss_pred HHHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 536 ALANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.|+.+-.+..+...|... .-+..++.+|++. +..++..|..+..-..+.+..
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCC
Confidence 999999999887666543 3367777888876 489999999999988875544
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.67 Score=34.23 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhC
Q 007131 396 QERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEG 469 (617)
Q Consensus 396 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~ 469 (617)
.+.|++++.++++....- ..+.+.+.++.++++.... ...+|-.|..+|.-+|.+.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~--------~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGI--------QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHH--------HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 477899999997654443 3455779999999999764 78899999999999999999998887764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.89 E-value=5.2 Score=42.38 Aligned_cols=180 Identities=16% Similarity=0.035 Sum_probs=106.0
Q ss_pred HHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH---hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 385 LSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM---KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 385 ~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~---~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++..-.++.+.-|+.+|+.++.+...+. ..+. ....+..++..+. .++..+..++++|.|+..++.+
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s-------~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g 621 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNS-------LFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAG 621 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhh-------hhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHH
Confidence 334444456778889999998876654431 1122 1224445555444 5678889999999999999888
Q ss_pred HHHHHHhCCHHHHHHHH---hc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh--cCCCCHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLA---RS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK--WSSGGDGVLERAAG 535 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL---~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~a~~ 535 (617)
++.+... ...+.... +. .+..++.+-+....|.+..- -+.-.+.|+.+.+..++.. .+..+-+.....+.
T Consensus 622 ~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l--~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~ 697 (745)
T KOG0301|consen 622 RELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLL--IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLV 697 (745)
T ss_pred HHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH--HhcccccchHHHHHHHHHhhcccchhHHHHHHHHH
Confidence 8887654 22222222 22 33444444333344444211 0000114555555554432 13334456778889
Q ss_pred HHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHH
Q 007131 536 ALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
||.+|+..+....++.+.-.+..+++-+++..+.+.....+
T Consensus 698 AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a 738 (745)
T KOG0301|consen 698 ALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIA 738 (745)
T ss_pred HHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHH
Confidence 99999999989888888788888888776543333333333
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.88 E-value=18 Score=37.82 Aligned_cols=219 Identities=21% Similarity=0.155 Sum_probs=113.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch--
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA-- 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-- 459 (617)
|.|-.-+.+..+-++..++++++.++...-.. ... ...+..|-.+|++++...|-.|+++|..||...
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~---------~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVGS---------QFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccCH---------HHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 44444555566788889999988876332111 111 234567777888888889999999999999732
Q ss_pred -------hhHHHHHHhC-C--HHHHHHHHhcCCHH-------------------HHHHHHHHHHHhcCCcchH-------
Q 007131 460 -------KVAKAVAEEG-G--INILAVLARSMNRL-------------------VAEEAAGGLWNLSVGEEHK------- 503 (617)
Q Consensus 460 -------~~~~~i~~~~-~--i~~L~~lL~~~~~~-------------------~~~~a~~~L~nL~~~~~~~------- 503 (617)
+.-..|.+.+ . .-++..+|+.++++ ....+..++..|+-..+.+
T Consensus 337 kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~F 416 (898)
T COG5240 337 KVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDF 416 (898)
T ss_pred eeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHH
Confidence 2222232211 1 23455555554432 2233456666666433211
Q ss_pred --HHHHhcCChHH---HHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-------hC--------CHHHHHHHH
Q 007131 504 --GAIADAGGVKA---LVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-------AG--------GVHALVMLA 563 (617)
Q Consensus 504 --~~i~~~g~i~~---L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-------~~--------~~~~L~~ll 563 (617)
..+.+.||.+- +++.+.+.-...++.++.|+..|+-.-.+.+-.+..++ .| .+..+...+
T Consensus 417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~ 496 (898)
T COG5240 417 LGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRL 496 (898)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH
Confidence 12223455432 33333221123455566655555544333332111111 11 122222211
Q ss_pred hcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
--. +.-++.+|+.+|...+..... ...-..+...|.+++.+.+++||
T Consensus 497 iLE-N~ivRsaAv~aLskf~ln~~d------~~~~~sv~~~lkRclnD~DdeVR 543 (898)
T COG5240 497 ILE-NNIVRSAAVQALSKFALNISD------VVSPQSVENALKRCLNDQDDEVR 543 (898)
T ss_pred HHh-hhHHHHHHHHHHHHhccCccc------cccHHHHHHHHHHHhhcccHHHH
Confidence 111 247889999999887763221 12223456667778888888876
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.22 Score=50.31 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=69.8
Q ss_pred HhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcC
Q 007131 147 VARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV 226 (617)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 226 (617)
...|++++.|+++ +| .++.- ....++|++|.+++|..++. +... ..++|++|++++|..+.. -.
T Consensus 48 ~~~~~~l~~L~Is--~c-~L~sL-----P~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~s----LP 111 (426)
T PRK15386 48 IEEARASGRLYIK--DC-DIESL-----PVLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEISG----LP 111 (426)
T ss_pred HHHhcCCCEEEeC--CC-CCccc-----CCCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCcccccc----cc
Confidence 3457999999995 46 44332 22234799999999866422 1111 135899999999865542 12
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC-CCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD-VGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.+|++|.++++. ... +..--++|+.|.+.+.. .....++.. --++|++|++++|..+.
T Consensus 112 ~sLe~L~L~~n~-~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 112 ESVRSLEIKGSA-TDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII 170 (426)
T ss_pred cccceEEeCCCC-Ccc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCccc
Confidence 478888886532 211 11122467777775422 111111110 12578899998887553
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.9 Score=43.38 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=124.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH----hcC-CHHHHHHHHHHHHHhc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA----KSW-REGLQSEAAKAIANLS 456 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL----~~~-~~~~~~~a~~~L~~ls 456 (617)
...+.-|.+..+.....|+..+..+|...- -.+..|.|++.+ ..+ -..++.++..++.+++
T Consensus 97 ~~al~aL~s~epr~~~~Aaql~aaIA~~El--------------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 97 GMALRALKSPEPRFCTMAAQLLAAIARMEL--------------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHhhC--------------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 455566677778888888888887764322 233445554444 333 3457888899999988
Q ss_pred cchhhHHHHHHhCCH-HHHH-HHHhc-CCHHHHHHHHHHHHH-hcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHH
Q 007131 457 VNAKVAKAVAEEGGI-NILA-VLARS-MNRLVAEEAAGGLWN-LSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLE 531 (617)
Q Consensus 457 ~~~~~~~~i~~~~~i-~~L~-~lL~~-~~~~~~~~a~~~L~n-L~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 531 (617)
....-...+...+.+ -.++ ..++. .+..++..|+.+|.+ +-+ .+..+..++-.-.+++..-+ +..++.+++.
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq~~d~e~q~ 239 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQGNDEELQH 239 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhccCCcHHHHH
Confidence 855544444444442 2333 33444 445778888999887 332 34444444433444444332 3567889999
Q ss_pred HHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC-CCCCCcccc------------cc
Q 007131 532 RAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG-DSNSNNSAV------------GQ 597 (617)
Q Consensus 532 ~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~------------~~ 597 (617)
+|.+||..+-+-. .--....+.-......+.+++.+ +++...|..--..+|... ++....+.. ..
T Consensus 240 aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aa 318 (858)
T COG5215 240 AAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAA 318 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHH
Confidence 9999998875321 11112233222333445666764 899998888777777522 111100000 00
Q ss_pred ccCcHHHHHHHhcCCCCC
Q 007131 598 EAGALEALVQLTRSPHEG 615 (617)
Q Consensus 598 ~~g~~~~L~~ll~~~~~~ 615 (617)
-+.++|.|+.+|...+++
T Consensus 319 v~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 319 VADVLPELLSLLEKQGED 336 (858)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 134788999988875554
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.43 E-value=3.8 Score=43.87 Aligned_cols=158 Identities=19% Similarity=0.094 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchHHHHHhc
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA 509 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~ 509 (617)
+.+-+++.+.+|-+|...+..++- +. ..-...++|..|+.. ..+.+++|+.+|+-+|.-+...+.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~al-Ay-----~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-------- 587 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLAL-AY-----VGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-------- 587 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHH-HH-----hccCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------
Confidence 444455666677777666655432 11 011123346666666 556889999999999998876543
Q ss_pred CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCC
Q 007131 510 GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 510 g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
...+..+.+|.+ +-++-|+.-|+-+|.-.|.+..+++.+- .|-.+..++ .+-|+..|+-++..+..--...
T Consensus 588 ~~~~s~V~lLse--s~N~HVRyGaA~ALGIaCAGtG~~eAi~------lLepl~~D~-~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 588 EQLPSTVSLLSE--SYNPHVRYGAAMALGIACAGTGLKEAIN------LLEPLTSDP-VDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred hhchHHHHHHhh--hcChhhhhhHHHHHhhhhcCCCcHHHHH------HHhhhhcCh-HHHHHHHHHHHHHHHHHhcccc
Confidence 366778889974 6688899999999999887766665543 122233333 4678888888877765311111
Q ss_pred CCccccccccCcHHHHHHHhcCCCCC
Q 007131 590 SNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
..-. -.|..+.+.+.+.+++++
T Consensus 659 --~~pk--v~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 659 --LCPK--VNGFRKQLEKVINDKHED 680 (929)
T ss_pred --cCch--HHHHHHHHHHHhhhhhhH
Confidence 0111 135566666677666654
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.20 E-value=4.6 Score=44.61 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=107.7
Q ss_pred HHHHHhhc-c-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 382 GLLLSLMQ-S-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 382 ~~l~~~l~-~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
..++.-+. . .+..++.-|.-.+..+.+.-+... ..+.-..+++.+.+++.+++..|..+|++++..
T Consensus 820 ~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~-----------~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 820 TKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP-----------QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred HHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc-----------chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 45555443 2 456778889999999877665542 112223778888999999999999999999982
Q ss_pred hh-----hHHHHHHh-CC----HHHHHHHHhcCCHHHHH----HHHHHHHHhcCCc-ch-HHHHHh----------cCCh
Q 007131 459 AK-----VAKAVAEE-GG----INILAVLARSMNRLVAE----EAAGGLWNLSVGE-EH-KGAIAD----------AGGV 512 (617)
Q Consensus 459 ~~-----~~~~i~~~-~~----i~~L~~lL~~~~~~~~~----~a~~~L~nL~~~~-~~-~~~i~~----------~g~i 512 (617)
-+ ..+.|... .- +-.|-+.+.....+... ..+..|.+=+.+. +. |..+.| ...+
T Consensus 889 l~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLl 968 (1233)
T KOG1824|consen 889 LPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLL 968 (1233)
T ss_pred hHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHH
Confidence 11 12222110 00 12233333333222222 2222233223221 21 222211 1344
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
|.|-..+ .++.+..+..++.++...-.+.+.+........+..+..++++++ .+|+..|..++-..+.
T Consensus 969 pkL~~~~---~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpD-l~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 969 PKLKLLL---RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPD-LEVRRVALVVLNSAAH 1036 (1233)
T ss_pred HHHHHHh---cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHc
Confidence 5555555 456667777777777666555555444444456677888888886 8999999999988775
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.15 E-value=3.3 Score=38.74 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=35.5
Q ss_pred hHHHHHhhc--cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 381 AGLLLSLMQ--STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 381 i~~l~~~l~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls 456 (617)
++.+++.+. +..+-+|..|..+|..+. ..+..+.+-+..+++-..+++.+-.++..+-
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~------------------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIG------------------DPESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhc------------------chhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 377888774 345677888999988653 2223345555555555666666555555543
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.00 E-value=4.2 Score=46.02 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=99.1
Q ss_pred hHHHHHhhcc----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 007131 381 AGLLLSLMQS----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANL 455 (617)
Q Consensus 381 i~~l~~~l~~----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l 455 (617)
+|.+++..+. .+|++|..|.-+|..+...+.+ + -...+|.|+..+. ++++.+|..++-+++-+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~-----------f-ces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE-----------F-CESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH-----------H-HHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 3777777743 5799999999999988655422 2 2335789999997 56899999999999988
Q ss_pred ccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.. +..-+.. -+.|.+.|.+.++.+++.|..+|.+|-.. .+++ .|.+..+..++. ++++++..-|
T Consensus 989 av~fpnlie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~---D~~~~IsdlA 1055 (1251)
T KOG0414|consen 989 AVRFPNLIEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLE---DPNAEISDLA 1055 (1251)
T ss_pred hhhcccccchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhc---CCcHHHHHHH
Confidence 773 3323332 24577888899999999999999999654 2333 688888988885 4777777666
Q ss_pred HHHHHHhcc
Q 007131 534 AGALANLAA 542 (617)
Q Consensus 534 ~~~L~~l~~ 542 (617)
-.-+-.|+.
T Consensus 1056 k~FF~Els~ 1064 (1251)
T KOG0414|consen 1056 KSFFKELSS 1064 (1251)
T ss_pred HHHHHHhhh
Confidence 655555543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.18 Score=28.00 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=5.0
Q ss_pred CCCeEEeccCCCCHH
Q 007131 254 KLVGLDVSRTDVGPI 268 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~ 268 (617)
+|++|++++|.++++
T Consensus 3 ~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 3 NLETLDLSNNQITDE 17 (24)
T ss_dssp T-SEEE-TSSBEHHH
T ss_pred CCCEEEccCCcCCHH
Confidence 333333333333333
|
... |
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.3 Score=40.08 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHhhCCHHHHHHHHhc---------CCHHHHHHHHHHHHHhccchhhHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKS---------WREGLQSEAAKAIANLSVNAKVAKAVAE-EGGINILAVLARSMNRLVAEEAAG 491 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~---------~~~~~~~~a~~~L~~ls~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~ 491 (617)
+.+++.||+..|+.+|.. .+.+.+..++.++..|..+..+...+.. .+++..|+..|.+.+..++..|+.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 567789999999998863 2347888999999999999998888887 555899999999999999999999
Q ss_pred HHHHhc
Q 007131 492 GLWNLS 497 (617)
Q Consensus 492 ~L~nL~ 497 (617)
+|..+|
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.28 E-value=6.7 Score=42.47 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=84.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..|..||++.....+..|..-|..+.....+ . ....|.+|+-..+.+.+++...---|..-|....+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v------------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V------------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-H------------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC
Confidence 5677888887777777777655554322221 1 12346677777777777666554433333332221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l 540 (617)
-..+ .|..+=+-|+++|+.++..|+.+|..+=. -++ .|.++..+++ ..+.++-|+..|+-++-.|
T Consensus 105 LALL----SIntfQk~L~DpN~LiRasALRvlSsIRv------p~I----aPI~llAIk~~~~D~s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 105 LALL----SINTFQKALKDPNQLIRASALRVLSSIRV------PMI----APIMLLAIKKAVTDPSPYVRKTAAHAIPKL 170 (968)
T ss_pred ceee----eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhH----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHH
Confidence 1111 24555566777777777666666554421 111 1222222222 1345566666666666666
Q ss_pred ccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 541 AADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 541 ~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
=.-+ +.+.++. ..+-.+|.+. .+.|.-.|+.|...+|
T Consensus 171 YsLd~e~k~qL~-----e~I~~LLaD~-splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 171 YSLDPEQKDQLE-----EVIKKLLADR-SPLVVGSAVMAFEEVC 208 (968)
T ss_pred hcCChhhHHHHH-----HHHHHHhcCC-CCcchhHHHHHHHHhc
Confidence 4333 3333322 2222333333 2555555665555555
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.98 Score=40.93 Aligned_cols=77 Identities=18% Similarity=0.094 Sum_probs=62.0
Q ss_pred HHHHHHhCCHHHHHHHHhc---------CCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHH
Q 007131 462 AKAVAEEGGINILAVLARS---------MNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~---------~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
-..+++.||+..|+++|.. .+.+....++.+|..|.....+...+.+ .+++..++..| .+.+..++.
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L---~s~~~~~r~ 176 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL---DSPNIKTRK 176 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT-----TTSHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH---CCCCHHHHH
Confidence 4566788999999999874 3346788899999999988877777776 88899999998 468889999
Q ss_pred HHHHHHHHhc
Q 007131 532 RAAGALANLA 541 (617)
Q Consensus 532 ~a~~~L~~l~ 541 (617)
.|+.+|..+|
T Consensus 177 ~~leiL~~lc 186 (187)
T PF06371_consen 177 LALEILAALC 186 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999887
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=89.73 E-value=3.1 Score=37.35 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHh
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~ 520 (617)
++.+|..++.+++-|+..-+ .+++ ..++.+...|.++++.+++.|+.+|..|...+-.+.. ...+..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 47788889999988876322 1221 1378899999999999999999999999765421111 122366777784
Q ss_pred hcCCCCHHHHHHHHHHHHHhccC
Q 007131 521 KWSSGGDGVLERAAGALANLAAD 543 (617)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~l~~~ 543 (617)
+++++++..|..++..+...
T Consensus 74 ---D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 ---DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred ---CCCHHHHHHHHHHHHHHHHh
Confidence 58899999999999999865
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=89.72 E-value=38 Score=38.01 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=34.3
Q ss_pred hcChHHHHHhhcc-----CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQS-----TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438 (617)
Q Consensus 378 ~~~i~~l~~~l~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~ 438 (617)
..|+..+++++.+ ...+.....+..|...+.. +.+|+.+.+.|+++.|++.|.
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv--------~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV--------KVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh--------HHHHHHHHHcCCHHHHHHHHH
Confidence 3456777888754 2234444555555554332 345688999999999999885
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=37 Score=38.01 Aligned_cols=167 Identities=18% Similarity=0.148 Sum_probs=97.6
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHhccchh--hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc---hH
Q 007131 431 RLLLDLAKSW--REGLQSEAAKAIANLSVNAK--VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE---HK 503 (617)
Q Consensus 431 ~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~~--~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~---~~ 503 (617)
...++.|... |.++++.|..++..+..+-. .+..+ ...++.+++-| .++-++..|+.|+.-++..+- ..
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~ 646 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLS 646 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehh
Confidence 3444555443 78899999998887655221 11111 22244444444 455678889999999987762 22
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC--CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
... ..+++.+..-+++ ....++...+.++-.|..+ +.......+ -.+..+..++..++ -.+.+.|...|..
T Consensus 647 ~~l--~~il~~l~~flrK---~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesd-lhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 647 PVL--TEILPELASFLRK---NQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESD-LHVTQLAVAFLTT 719 (1233)
T ss_pred hhH--HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHH-HHHHHHHHHHHHH
Confidence 222 2467778887765 4445555566666555532 222222222 12333444444443 6888899999999
Q ss_pred HhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 582 l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+....+. ....+..-.++.++.+++++
T Consensus 720 l~~~~ps----~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 720 LAIIQPS----SLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHhcccH----HHHHHhhhhHHHHHHHhhCc
Confidence 8874333 23334566778888888775
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=88.61 E-value=4.5 Score=44.52 Aligned_cols=191 Identities=13% Similarity=0.004 Sum_probs=108.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCc--ccCC----chhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDEN--ASID----CGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~----~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
..+++.|..+ ++-..++.++.-+.+.+..- +..+ ..+++.+. ...+|.|++...+.....+..=..+|.++
T Consensus 818 ~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshV 894 (1030)
T KOG1967|consen 818 EKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHV 894 (1030)
T ss_pred HHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence 4566666542 33344444454443333221 1111 22333322 45678888888755555666666777777
Q ss_pred ccchhhHHHHHHh-CCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCC-HHHHHH
Q 007131 456 SVNAKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGG-DGVLER 532 (617)
Q Consensus 456 s~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~-~~~~~~ 532 (617)
..+-+....+-+. .-.|.|++.|.-++..++..+..++.-+.... .....=+ ...+|.++.+=.+ ++.+ ..++..
T Consensus 895 l~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~-~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 895 LTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSD-NDNNMMVVRED 972 (1030)
T ss_pred HhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCC-CCcchhHHHHH
Confidence 6654432222122 22577777777788888888888877665332 2222211 2345555554432 3332 568899
Q ss_pred HHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHH
Q 007131 533 AAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARA 578 (617)
Q Consensus 533 a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~ 578 (617)
|+.||..|++ .+...-.-.+...+..|...|.++. ..+|..|+.+
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eAv~t 1018 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHHHHH
Confidence 9999999998 4544333334455667777777764 6788887765
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.79 Score=47.38 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC--CCCHHHHhc--CcCCCeecccCCCC
Q 007131 172 KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL--NVDEVALGN--VLSVRFLSVAGTSN 239 (617)
Q Consensus 172 ~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~l~~--~~~L~~L~l~~~~~ 239 (617)
+.+....|.+..++|++++-..-+.+..+++..|+|+.|+|++|. .-++..+.+ ...|++|-+.||+-
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcc
Confidence 444455677777777776544556666677777777777777762 222233332 34566666666543
|
|
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.96 Score=43.77 Aligned_cols=186 Identities=20% Similarity=0.101 Sum_probs=104.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC--CHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG--GIRLLLDLAKS----WREGLQSEAAKAIANL 455 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~Lv~lL~~----~~~~~~~~a~~~L~~l 455 (617)
..+...+..=..+.+.-++..++-++...... ..+...+ ....+..++.. ..+..+..++++++|+
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~Nl 137 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPAS--------DLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANL 137 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHH--------HHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHH--------HHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Confidence 33444443322233566666676655433222 2332222 24555555543 3577889999999999
Q ss_pred ccchhhHHHHHHhCC--HHHHHHHHhcC----CHHHHHHHHHHHHHhcCCc-chHH-HHHhcCChHHHHHHHhhcCCCCH
Q 007131 456 SVNAKVAKAVAEEGG--INILAVLARSM----NRLVAEEAAGGLWNLSVGE-EHKG-AIADAGGVKALVDLIFKWSSGGD 527 (617)
Q Consensus 456 s~~~~~~~~i~~~~~--i~~L~~lL~~~----~~~~~~~a~~~L~nL~~~~-~~~~-~i~~~g~i~~L~~ll~~~~~~~~ 527 (617)
..++..+..+.+... +-..+..+... +..++..++..+.|+|..- ..+. .=.....+..+++.+.. ...++
T Consensus 138 F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~-~~~d~ 216 (268)
T PF08324_consen 138 FSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSR-EESDE 216 (268)
T ss_dssp TTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHC-CHTSH
T ss_pred hCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-ccCCH
Confidence 999998888865432 22222222223 5778889999999997532 1110 00011133444453322 33688
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHh-CCHHHHHHHHhcCCchhHHHHHH
Q 007131 528 GVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~i~~~-~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
++...++-++++|...++......+. |+...+...-..+.++++++.+.
T Consensus 217 Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 217 EALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 99999999999999766665555543 34344444444444567766554
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.03 E-value=25 Score=37.88 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=73.7
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
++..+.+.+ ++..|..+|...+..++.-|...+..|+........+... ...++..|. ...+..+++.|+..|.
T Consensus 321 D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLk--terDvSirrravDLLY 394 (938)
T KOG1077|consen 321 DSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLK--TERDVSIRRRAVDLLY 394 (938)
T ss_pred CCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhc--cccchHHHHHHHHHHH
Confidence 334555533 4778888888888888999999999998876666655554 666777776 3567789999999999
Q ss_pred HhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 539 ~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.+|..+..+ .|++ .|++.+.+.+ ..+++..+-=.+-|+
T Consensus 395 ~mcD~~Nak-~IV~-----elLqYL~tAd-~sireeivlKvAILa 432 (938)
T KOG1077|consen 395 AMCDVSNAK-QIVA-----ELLQYLETAD-YSIREEIVLKVAILA 432 (938)
T ss_pred HHhchhhHH-HHHH-----HHHHHHhhcc-hHHHHHHHHHHHHHH
Confidence 998544433 3332 2455555543 455555444344443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.54 E-value=3.6 Score=44.32 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..++.-...+++.+|.-|.+.+..+. ..+ +..-...++.+.+++.++-+|..|+-.++++- ...
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l~---v~~-----------i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~ 152 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCLR---VDK-----------ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DID 152 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeEe---ehH-----------HHHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCC
Confidence 44455555677888777766666542 211 12234578999999999999998888877753 334
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 500 (617)
.+.....|.++.|-.++.+.++.|..+|+.+|..+...+
T Consensus 153 ~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 556667777999999999999999999999999997554
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.50 E-value=5 Score=42.78 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=62.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~~ 459 (617)
+..|-+++.+....+|.-|+..++.|++..... +.+..+ ...++..|+ ..|..++..|+..|..++...
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~--------davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFSI--------DAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccchH--------HHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 355566666656666666766666665442211 233333 567788888 458889999999999886544
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~ 497 (617)
. ...|+ ..|++.|...+..+++..+.=.+-|+
T Consensus 401 N-ak~IV-----~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 401 N-AKQIV-----AELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred h-HHHHH-----HHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3 44453 44777777777777765544444443
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=87.19 E-value=3.2 Score=36.32 Aligned_cols=142 Identities=23% Similarity=0.169 Sum_probs=84.3
Q ss_pred HHHHhhc--cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 383 LLLSLMQ--STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 383 ~l~~~l~--~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
.++..+. ...++++..+.-++..+- +.. ++.. ..-.-+.+-.++.+.+.+-...++.++..+-. .+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~-------~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAA-------REEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHH-------HHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHh-------HHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence 3444443 355677888887777662 111 1111 11111222233333344567778888887776 45
Q ss_pred hhHHHHHHhCC-HHHHHHHHh--cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHH-HHHHHHH
Q 007131 460 KVAKAVAEEGG-INILAVLAR--SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG-VLERAAG 535 (617)
Q Consensus 460 ~~~~~i~~~~~-i~~L~~lL~--~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~-~~~~a~~ 535 (617)
+....+....| ++.++.++. ..+..++..++.+|..-|.+...|..|.+ .+++-|-+++.. +.++. ++..|+-
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~--~~~~~~ir~~A~v 152 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKN--SKDDSEIRVLAAV 152 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTT--CC-HH-CHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHcc--ccchHHHHHHHHH
Confidence 55566654444 788888988 67778888888888777777665555554 688888888853 34444 6666665
Q ss_pred HHH
Q 007131 536 ALA 538 (617)
Q Consensus 536 ~L~ 538 (617)
+|.
T Consensus 153 ~L~ 155 (157)
T PF11701_consen 153 GLC 155 (157)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.90 E-value=7.4 Score=41.67 Aligned_cols=105 Identities=19% Similarity=0.076 Sum_probs=69.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 507 (617)
|.+..+++-..+++..+|...+.+|+-++......+.-+-.+-...+..-+.+..+.|+..|+.+|..+-.++.. -
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d----e 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD----E 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC----C
Confidence 344455555566788999999999998887333333333344466777777788889999999999888644310 0
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+..++..++.+++ .+++++|++.|+..+.
T Consensus 161 e~~v~n~l~~liq--nDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQ--NDPSDEVRRAALSNIS 189 (892)
T ss_pred cccHHHHHHHHHh--cCCcHHHHHHHHHhhc
Confidence 1234556677776 5777888887765443
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=86.88 E-value=11 Score=35.48 Aligned_cols=185 Identities=12% Similarity=-0.006 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHh-------cC--CHH---HHHHHHHHHHHhccc
Q 007131 392 QEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAK-------SW--REG---LQSEAAKAIANLSVN 458 (617)
Q Consensus 392 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~-------~~--~~~---~~~~a~~~L~~ls~~ 458 (617)
+++.++.|+..|. ...+.. |.-.-.+. ..|.+..|++=+- .+ .+. -.-.|...+.-+|.+
T Consensus 8 ~~~~Re~Al~eLs---k~r~~~----~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh 80 (262)
T PF04078_consen 8 NPETRENALLELS---KKRESF----PDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH 80 (262)
T ss_dssp SHHHHHHHHHHHH---HTCCC-----TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-
T ss_pred CcchHHHHHHHHH---Hhhhcc----cchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence 5677888866655 333322 11112233 5576666655332 11 122 233455666678889
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSM-----NRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~-----~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
++.|..+.++...--|...|... -+.++-.+.++++.|...+ +.-.-+.+.+.+|..++.|+. +++--+.
T Consensus 81 petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~---GselSKt 157 (262)
T PF04078_consen 81 PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF---GSELSKT 157 (262)
T ss_dssp TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH---S-HHHHH
T ss_pred hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh---ccHHHHH
Confidence 99999999988754555555442 2357788899999998643 555666678999999999974 6777778
Q ss_pred HHHHHHHHhccCCCc-------hHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 532 RAAGALANLAADDKC-------SMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~-------~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
.|+.++..+-.++.+ .+.+.. ...+..++.-+...+++++-.++.++-..|+.++
T Consensus 158 vAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 158 VATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 888888887766654 233322 1234455554444445899999999999998643
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.85 E-value=16 Score=40.91 Aligned_cols=132 Identities=12% Similarity=0.077 Sum_probs=82.0
Q ss_pred HHHHHhhc------c--CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 382 GLLLSLMQ------S--TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIA 453 (617)
Q Consensus 382 ~~l~~~l~------~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~ 453 (617)
+.+++.+. . .++....-|+..+.+|+..-.++..+ +...+.=.++.++..++++---+|..||+++.
T Consensus 413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-----~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY-----KSQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch-----HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 55666664 1 34555667778888887443333211 34555556677777888888889999999999
Q ss_pred Hhcc-chhhHHHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcc-hHHHHHh--cCChHHHHHHHh
Q 007131 454 NLSV-NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEE-HKGAIAD--AGGVKALVDLIF 520 (617)
Q Consensus 454 ~ls~-~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~--~g~i~~L~~ll~ 520 (617)
..+. +=.....+ ..++....+.|. +.+..|+..|+-||..+-.+.+ ....+.. .+.++.|+.+..
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n 557 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN 557 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH
Confidence 9984 21122222 224566677777 5666788899999998876553 3233332 234555555554
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.47 E-value=1.6 Score=40.19 Aligned_cols=79 Identities=22% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhCC---HHH----HHHHHhc-CCHHHHHHHHHHHHHhcCCcch--HHHHHhcCCh
Q 007131 443 GLQSEAAKAIANLSVNAKVAKAVAEEGG---INI----LAVLARS-MNRLVAEEAAGGLWNLSVGEEH--KGAIADAGGV 512 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~---i~~----L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~--~~~i~~~g~i 512 (617)
.-|..|..+|+.|+..+.+-+.|...+. ++. |+++|.. +++-.+|.|+..|.+|+..++. +....+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3589999999999999998888887765 333 4444433 5667899999999999987743 3444458899
Q ss_pred HHHHHHHhh
Q 007131 513 KALVDLIFK 521 (617)
Q Consensus 513 ~~L~~ll~~ 521 (617)
..|+.-++.
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999964
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=86.34 E-value=6.6 Score=39.04 Aligned_cols=190 Identities=14% Similarity=0.076 Sum_probs=127.2
Q ss_pred HHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch-h-----hHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA-K-----VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLW 494 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~-----~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~ 494 (617)
..+...+.+..|+..|..-+-+.+..++.+..++-... . ..+.+... .-+.+..++.. +++++.-.+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHH
Confidence 46778899999999999889999999999999988732 1 12223222 12333334433 56777788888899
Q ss_pred HhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-cCCCchHHHHHhCC---HHHHHHHHhcCCchh
Q 007131 495 NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA-ADDKCSMEVALAGG---VHALVMLARSCKFEG 570 (617)
Q Consensus 495 nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~---~~~L~~ll~~~~~~~ 570 (617)
.....+.....+.....+..+.+.+. ..+-++...|..++..+- .+..........+. +.....++.+++ =-
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~---~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N-Yv 224 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQ---LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN-YV 224 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTT---SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS-HH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhc---CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC-eE
Confidence 98888888888888888888888884 577889999999998864 45555555555443 455666777775 57
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
++..+...|..|-.+.........-+.+..-+..+..+|++++..|
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~I 270 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNI 270 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHH
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhh
Confidence 8889999999988754432222223334455666666777765433
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.10 E-value=7.8 Score=43.58 Aligned_cols=156 Identities=15% Similarity=0.016 Sum_probs=97.5
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcch
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEH 502 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~ 502 (617)
.+-.++++.|+..|++.+..++-.|+.-++.++...+ . .++ ...|...+.++.- +++..-..|+-+|+.||...=.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~-~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-P-ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-H-HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 3445677788888888899999999999999998655 1 121 2235556665544 3456777899999999865422
Q ss_pred HHHHHhcCChHHHHHHHhh-----cCCCCHHHHHHHHHHHHHhccCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHH
Q 007131 503 KGAIADAGGVKALVDLIFK-----WSSGGDGVLERAAGALANLAADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQA 575 (617)
Q Consensus 503 ~~~i~~~g~i~~L~~ll~~-----~~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a 575 (617)
.....+ .++|.+++.|.. .++....++.+|+.++|.++...+. -.-+++.=.-..|...+.+. +-.++.+|
T Consensus 414 lps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-evncRRAA 491 (1133)
T KOG1943|consen 414 LPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-EVNCRRAA 491 (1133)
T ss_pred chHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-hhhHhHHH
Confidence 211111 345555555532 1334567999999999999864322 12233311222233444444 47899999
Q ss_pred HHHHHHHhc
Q 007131 576 ARALANLAA 584 (617)
Q Consensus 576 ~~~L~~l~~ 584 (617)
.+|+.....
T Consensus 492 sAAlqE~VG 500 (1133)
T KOG1943|consen 492 SAALQENVG 500 (1133)
T ss_pred HHHHHHHhc
Confidence 999987764
|
|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
Probab=85.86 E-value=1 Score=36.16 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHhhhch
Q 007131 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCR 68 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~~~~~~~~~~vck 68 (617)
.+.+||+|++..||.+++..+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478999999999999999999988888887
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.40 E-value=12 Score=42.53 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=98.0
Q ss_pred CHHHHHHHHh----cCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcch
Q 007131 429 GIRLLLDLAK----SWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEH 502 (617)
Q Consensus 429 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~ 502 (617)
..|.+++..+ ..+|++|..|.-+|+.+.. +.+.++ ...+.|+.+|. ++++-++.+++-+++.++....+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4455555553 3478999999989887654 333222 23788999998 58888999999999999875442
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 503 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
-. + -.-+.|...| ++.++.+++.|.-+|.+|-.++ .|.--|.+..+..++.+++ ++++..|-.-...|
T Consensus 995 li---e-~~T~~Ly~rL---~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~-~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 LI---E-PWTEHLYRRL---RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPN-AEISDLAKSFFKEL 1062 (1251)
T ss_pred cc---c-hhhHHHHHHh---cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCc-HHHHHHHHHHHHHh
Confidence 11 1 1223344455 5688999999999999997643 2333477888888988885 88888888777777
Q ss_pred hcc
Q 007131 583 AAH 585 (617)
Q Consensus 583 ~~~ 585 (617)
+..
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 653
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=85.28 E-value=47 Score=33.90 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=71.9
Q ss_pred HHHHHhhccC---CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cC---CHHHHHHHHHHHHH
Q 007131 382 GLLLSLMQST---QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SW---REGLQSEAAKAIAN 454 (617)
Q Consensus 382 ~~l~~~l~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~---~~~~~~~a~~~L~~ 454 (617)
..|...+.+. .+.+--.|+..+..+..++.... ..+.+.|.++.+++.+. .. +.++....-.++..
T Consensus 109 ~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~-------~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~A 181 (379)
T PF06025_consen 109 SSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSF-------SILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSA 181 (379)
T ss_pred HHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchh-------HHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhH
Confidence 4555555442 35666788888888765555443 56889999999999998 43 57788888899999
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHhc
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLARS 480 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~~ 480 (617)
|+.+..+.+.+.+.+.++.+++++.+
T Consensus 182 icLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 182 ICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 99999999999999999999988765
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.23 E-value=0.42 Score=50.83 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=40.7
Q ss_pred CCCCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcc
Q 007131 35 NEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80 (617)
Q Consensus 35 ~~~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w 80 (617)
...+.+..||.|+...||.+|+.++++.+++||+.|+.+..+...|
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 4557899999999999999999999999999999999997655555
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.15 E-value=28 Score=39.44 Aligned_cols=212 Identities=17% Similarity=0.105 Sum_probs=122.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~ 459 (617)
++.|.+.++..+-.++=.|+..+..++...+.. .....+..+++++... ++.....||-+|+.||..-
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----------Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----------LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 366666777778889999999999987655422 2333556666655544 4667778899999887621
Q ss_pred hhHHHHHHhCCHHHHHHHHhcC--------CHHHHHHHHHHHHHhcCCcchH--HHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSM--------NRLVAEEAAGGLWNLSVGEEHK--GAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~--------~~~~~~~a~~~L~nL~~~~~~~--~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
-...... ...+|.++.-|..+ ...++.+|+-++|.++...+.. .-+...=+...|+..+ .+.+-.+
T Consensus 412 lLlps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al---FDrevnc 487 (1133)
T KOG1943|consen 412 LLLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL---FDREVNC 487 (1133)
T ss_pred CcchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh---cCchhhH
Confidence 1111000 11345555555432 3368999999999998543211 1122111112233444 3567778
Q ss_pred HHHHHHHHHHhccCCCc--------------------------hHHHHHh-CCHHHHHHHH-hc---CCchhHHHHHHHH
Q 007131 530 LERAAGALANLAADDKC--------------------------SMEVALA-GGVHALVMLA-RS---CKFEGVQEQAARA 578 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~--------------------------~~~i~~~-~~~~~L~~ll-~~---~~~~~~~~~a~~~ 578 (617)
+++|..++.....--.+ ...+.+. |....+++-+ .+ ..+..+++.|+++
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 89998888877642111 1122222 3334444422 22 2347999999999
Q ss_pred HHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 579 LANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 579 L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
|.+|+...+.. ...+..++++...-+++.
T Consensus 568 L~~Ls~~~pk~-------~a~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 568 LHKLSLTEPKY-------LADYVLPPLLDSTLSKDA 596 (1133)
T ss_pred HHHHHHhhHHh-------hcccchhhhhhhhcCCCh
Confidence 99998744331 134556777665544443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=84.99 E-value=23 Score=34.81 Aligned_cols=109 Identities=16% Similarity=0.111 Sum_probs=74.8
Q ss_pred CCHHHHH-HHHhcCCHHHHHHHHHHHHHhccchh-hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chH
Q 007131 428 GGIRLLL-DLAKSWREGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHK 503 (617)
Q Consensus 428 ~~i~~Lv-~lL~~~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~ 503 (617)
+.+..|+ ..++++++.+|+.|+.+|+-.+.-+. .... .++.+...++.++++++..|+.++..+.... +.-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4454544 67788899999999999998887433 2222 2677888887788999999999999886432 211
Q ss_pred HHH-------HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC
Q 007131 504 GAI-------ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD 544 (617)
Q Consensus 504 ~~i-------~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~ 544 (617)
... .....+..+.+.+. +.+++++..|+..++-|-..+
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLD---SENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcC
Confidence 111 11334555666664 357789999999988876543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.96 E-value=11 Score=44.21 Aligned_cols=173 Identities=18% Similarity=0.045 Sum_probs=96.5
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
.||.|.+.=-++++.+|.....+=..|..++.....-.-....+.|+.-|.+..-.+++++|.||..|-.+++.-...-.
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~ 1078 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEK 1078 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 45666666667788888655555445555533322222233466677777777889999999999999987643222211
Q ss_pred -cCChHHHHHHHhhcCCCCHHHHHH---HHHHHHHhcc--CC-C---chHHHHHhCCHHHHHH--HHhcCCchhHHHHHH
Q 007131 509 -AGGVKALVDLIFKWSSGGDGVLER---AAGALANLAA--DD-K---CSMEVALAGGVHALVM--LARSCKFEGVQEQAA 576 (617)
Q Consensus 509 -~g~i~~L~~ll~~~~~~~~~~~~~---a~~~L~~l~~--~~-~---~~~~i~~~~~~~~L~~--ll~~~~~~~~~~~a~ 576 (617)
...-..+...+. +-.+.++++ ++.+|..++. .+ . ...++.+ ..+|.|+. .+ + +-.+++..+.
T Consensus 1079 lpelw~~~fRvmD---DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gim-s-~v~evr~~si 1152 (1702)
T KOG0915|consen 1079 LPELWEAAFRVMD---DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIM-S-KVNEVRRFSI 1152 (1702)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcc-c-chHHHHHHHH
Confidence 112233333342 234455544 4556666652 11 1 1222222 34555553 33 2 2479999999
Q ss_pred HHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 577 ~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
.++..|+..+.. ...-.-...++.|.+....
T Consensus 1153 ~tl~dl~Kssg~----~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGK----ELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHhchh----hhcchhhHHHHHHHHHccc
Confidence 999999985554 1111224556666665554
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.38 E-value=5.2 Score=41.42 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCC-CCHHHHHHHHHHHHHhccCCCchHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS-GGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~-~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
...+++++.+++...+..|..-|..++.+......++...++..|..+++++.. ....+....+.++..+-..+-....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456778888888888777999999999999999999999999999999986222 2445666666666665544433222
Q ss_pred HHHhCCHHHHHHHHhc-CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 550 VALAGGVHALVMLARS-CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.+...++..+..+..- .-+..+-..|...|.++...++. ....+.+.--++.|+..++..+..+
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~---~~~~v~eev~i~~li~hlq~~n~~i 229 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT---LRQLVAEEVPIETLIRHLQVSNQRI 229 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH---HHHHHHhcCcHHHHHHHHHhcchHH
Confidence 2322333333333321 11256778899999998875543 2344456667888888888766543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.09 E-value=0.85 Score=38.16 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=16.4
Q ss_pred cCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
.+|.++.|++.+|.+++-.. -+..+|.|+.|++++|+.
T Consensus 75 kf~t~t~lNl~~neisdvPe--E~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPE--ELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ccchhhhhhcchhhhhhchH--HHhhhHHhhhcccccCcc
Confidence 34444444444444333221 133345555555555543
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.26 E-value=17 Score=38.20 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=80.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHH
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME 549 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 549 (617)
.+..+++-+.+.+..|+...+.+|+-+...-.--......|.+..|.+-+. +..+.++..|+.+|..+-....+-+-
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~---DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF---DREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHhccCChHH
Confidence 466777777788889999999999888755333334444567777777774 46778999999999888654444222
Q ss_pred HHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccc
Q 007131 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 598 (617)
... ..|+..++..++++|+..| |.|+..++...+...+...+
T Consensus 169 ~~~----n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~IlERarD 210 (885)
T COG5218 169 RIV----NLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCILERARD 210 (885)
T ss_pred HHH----HHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhHHHHhhh
Confidence 222 3566777877777888765 56777666655544444433
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=83.13 E-value=1.6 Score=25.27 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=7.9
Q ss_pred CCCeEEeccCCCCHHHHH
Q 007131 254 KLVGLDVSRTDVGPITIS 271 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~ 271 (617)
+|+.|++++|.+++++..
T Consensus 3 ~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 3 SLRELDLSNNKLGDEGAR 20 (28)
T ss_pred ccCEEECCCCCCCHHHHH
Confidence 344444444444444433
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.99 E-value=43 Score=31.67 Aligned_cols=92 Identities=23% Similarity=0.153 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 550 (617)
|..|++-+..++.-.+..++-+++.|-.. -+||.|.+.|.+ ..+++-++..|+.+|+.++.
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s~----------~ai~~L~k~L~d-~~E~pMVRhEaAeALGaIa~-------- 249 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQSP----------AAIPSLIKVLLD-ETEHPMVRHEAAEALGAIAD-------- 249 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccch----------hhhHHHHHHHHh-hhcchHHHHHHHHHHHhhcC--------
Confidence 55566666667666788888888877443 578999999987 66788899999999998753
Q ss_pred HHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 551 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
...++.|.+++.+.. +-+++.+.-+|..+-.
T Consensus 250 --e~~~~vL~e~~~D~~-~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 250 --EDCVEVLKEYLGDEE-RVVRESCEVALDMLEY 280 (289)
T ss_pred --HHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHH
Confidence 445677788877653 5566666666655543
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.78 E-value=10 Score=39.43 Aligned_cols=125 Identities=17% Similarity=0.085 Sum_probs=78.4
Q ss_pred CCHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch
Q 007131 469 GGINILAVL-ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547 (617)
Q Consensus 469 ~~i~~L~~l-L~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 547 (617)
|.|..++.. ..+.+++|+.+|+-||.-++..+. ..++..+++|.+ +.+.-++...+-+|.-.|.+...+
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~--shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSE--SHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhh--ccchhhhhhhHHHhhhhhcCCccH
Confidence 345666666 556889999999999998887643 467777888874 556778888888887777554432
Q ss_pred HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 548 ~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
. ++..|-.++.+.. +-|+..|+-++..+..-.... .--. -.++++.+.+++.++++
T Consensus 621 ~------a~diL~~L~~D~~-dfVRQ~AmIa~~mIl~Q~n~~--Lnp~--v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 621 V------ATDILEALMYDTN-DFVRQSAMIAVGMILMQCNPE--LNPN--VKRIIKKFNRVIVDKHE 676 (926)
T ss_pred H------HHHHHHHHhhCcH-HHHHHHHHHHHHHHHhhcCcc--cChh--HHHHHHHHHHHHhhhhH
Confidence 2 2234444556554 778888888887765421111 1111 13455666665555443
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=82.75 E-value=1.8 Score=25.13 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=15.7
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhc
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHK 251 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~ 251 (617)
++|++|++++| .+++++...++..
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 46777777775 5677776666543
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=82.40 E-value=56 Score=32.64 Aligned_cols=155 Identities=13% Similarity=0.057 Sum_probs=107.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch-hhHHHHHH-hCC-HHHHHHHHhcC-----C--------HHHHHHHHHH
Q 007131 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NA-KVAKAVAE-EGG-INILAVLARSM-----N--------RLVAEEAAGG 492 (617)
Q Consensus 430 i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~-~~~~~i~~-~~~-i~~L~~lL~~~-----~--------~~~~~~a~~~ 492 (617)
++.+.+.|....+.+...+...|..++. +. .....+.. -+. .+.+.+++... . +.++......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888888988888888899999999998 43 33444443 333 56677776431 1 1677666665
Q ss_pred HHHhc-C-CcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHHH-hccCCC----chHHHHHhCCHHHHHHHHh
Q 007131 493 LWNLS-V-GEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALAN-LAADDK----CSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 493 L~nL~-~-~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~-l~~~~~----~~~~i~~~~~~~~L~~ll~ 564 (617)
+..+- . ++..+..+.+ .+.+..+.+-|. .+..+++...+.+|.. +..++. .|..+.....+..|..+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~---~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLR---KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhccc---CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 55543 2 4467777776 556677777774 4788899999999985 443332 2666777777888888766
Q ss_pred cCCc---hhHHHHHHHHHHHHhccCC
Q 007131 565 SCKF---EGVQEQAARALANLAAHGD 587 (617)
Q Consensus 565 ~~~~---~~~~~~a~~~L~~l~~~~~ 587 (617)
..++ ..+.+.|-..|..+|.++.
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCC
Confidence 5531 3889999999999997543
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=81.88 E-value=38 Score=35.17 Aligned_cols=183 Identities=17% Similarity=0.065 Sum_probs=106.6
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.+. .+.++..+..++..+..|+-.-... . .-...+..+...+ ....+..+..+..++..++
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~---------~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~--- 258 (415)
T PF12460_consen 192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDD---------D-DLDEFLDSLLQSISSSEDSELRPQALEILIWIT--- 258 (415)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh---------h-hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHH---
Confidence 5556655 4456778888888888775221111 1 0011222223223 2223444555555544432
Q ss_pred hhHHHHHHhC-----CHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cc-------------hHHHHHhcCChHHHHHHHh
Q 007131 460 KVAKAVAEEG-----GINILAVLARSMNRLVAEEAAGGLWNLSVG-EE-------------HKGAIADAGGVKALVDLIF 520 (617)
Q Consensus 460 ~~~~~i~~~~-----~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~-------------~~~~i~~~g~i~~L~~ll~ 520 (617)
|..+.+.. .++.|+++|.+ +++...|+.++.-|..+ ++ +|+.+.. ..+|.|++..+
T Consensus 259 --KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~ 333 (415)
T PF12460_consen 259 --KALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFK 333 (415)
T ss_pred --HHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHh
Confidence 22222211 14557777755 66777888888877766 21 2444444 36677777775
Q ss_pred hcCCCCHHHHHHHHHHHHHhccCCCchHHHHHh-CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 521 KWSSGGDGVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 521 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
. .+...+.+.+.+|.++-.+-+....+-+. ..+|.+++-|..++ .+++..+..+|..+..+.
T Consensus 334 ~---~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~-~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 334 E---ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD-ADVLLSSLETLKMILEEA 396 (415)
T ss_pred h---cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHcC
Confidence 3 34347888888999988765543333332 35688888887765 789999999999998743
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=81.18 E-value=12 Score=32.19 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=59.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~ 457 (617)
..+.+-+.+.++.++..|+..|-.++.++... .+..+...+++..|++++.. .++.++..+..++...+.
T Consensus 40 ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 40 KAIMKRLNHKDPNVQLRALTLLDACAENCGKR------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 67777788899999999999999998887653 23678889999999999988 588999999999988764
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.06 E-value=5.9 Score=36.65 Aligned_cols=83 Identities=19% Similarity=0.102 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhcCChHH---HHHHHhh--cCCCCHHHHHHHHHHHHHhccCCCc--hHHHHHhCCH
Q 007131 484 LVAEEAAGGLWNLSVGEEHKGAIADAGGVKA---LVDLIFK--WSSGGDGVLERAAGALANLAADDKC--SMEVALAGGV 556 (617)
Q Consensus 484 ~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~---L~~ll~~--~~~~~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~ 556 (617)
.-+..|+.+|..|+..+.|..-+...+-... |+..|.+ +..++.-.++.|+..|.+||..++. +....+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3578999999999999888888877554443 3333332 2456777899999999999987765 4444677889
Q ss_pred HHHHHHHhcC
Q 007131 557 HALVMLARSC 566 (617)
Q Consensus 557 ~~L~~ll~~~ 566 (617)
..|+.++...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999865
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.66 E-value=20 Score=41.07 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=70.4
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc---
Q 007131 382 GLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--- 457 (617)
Q Consensus 382 ~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--- 457 (617)
+.+..-+++ ...+.+..|+..|..|+..-+. ...-...+|-++.++.++..++|..|+.+|..+-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----------e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD----------EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----------HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 444444443 4567789999999999765433 23445678999999999999999999988887654
Q ss_pred --chhhHHHHHHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcC
Q 007131 458 --NAKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSV 498 (617)
Q Consensus 458 --~~~~~~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~ 498 (617)
.+.+...+.++ -+|.|-.++.+. ...++..-|..|..||.
T Consensus 495 ~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 495 DIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred CCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 22233344333 468888888773 34455555666666653
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.44 E-value=38 Score=37.48 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=101.4
Q ss_pred HHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc--chhh-
Q 007131 385 LSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKV- 461 (617)
Q Consensus 385 ~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~--~~~~- 461 (617)
+..++.+...++-.|+..|+.+....+.. ..+...+.+...+.+|++.++-+--.|...+..|+. .+..
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~--------~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il 804 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKA--------TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDIL 804 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchh--------hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhH
Confidence 33344555667888888899887655333 456678888899999998888777677664444443 1110
Q ss_pred ------------------H----HHHH---H-hCC-----HHHHHHH----HhcCCHHHHHHHHHHHHHhcCCcc--hHH
Q 007131 462 ------------------A----KAVA---E-EGG-----INILAVL----ARSMNRLVAEEAAGGLWNLSVGEE--HKG 504 (617)
Q Consensus 462 ------------------~----~~i~---~-~~~-----i~~L~~l----L~~~~~~~~~~a~~~L~nL~~~~~--~~~ 504 (617)
+ +.|. + .|- ...|++. ..+++.+.+..+++++++|+.--+ ...
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 0 1111 1 111 1122222 112323345566666666654221 112
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHH---hCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVAL---AGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~---~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
.+. ..+..++.+.. ++++..++++|+..+..+-.+-. .--.|.. ......+....+..+++.++..|+-++.
T Consensus 885 ~~~--ev~~~Il~l~~--~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 885 FFH--EVLQLILSLET--TDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred HHH--HHHHHHHHHHc--cCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 222 23344444444 57778888888888888754322 2112211 1233444455555555778888887777
Q ss_pred HHh
Q 007131 581 NLA 583 (617)
Q Consensus 581 ~l~ 583 (617)
.+-
T Consensus 961 ei~ 963 (982)
T KOG4653|consen 961 EIQ 963 (982)
T ss_pred HHH
Confidence 664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 617 | ||||
| 1fs2_A | 272 | Insights Into Scf Ubiquitin Ligases From The Struct | 1e-11 | ||
| 1fqv_A | 336 | Insights Into Scf Ubiquitin Ligases From The Struct | 6e-08 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 6e-07 |
| >pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272 | Back alignment and structure |
|
| >pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 6e-40
Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 17/237 (7%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
+ + S Q A + + +E +AV+ G + L+ L S E
Sbjct: 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQI-------QAVIDAGALPALVQLLSSPNEQ 69
Query: 444 LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EE 501
+ EA A++N++ + +AV + G + L L S N + +EA L N++ G E
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME-VALAGGVHALV 560
A+ DAG + ALV L+ SS + +L+ A AL+N+A+ ++ V AG + ALV
Sbjct: 130 QIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Query: 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
L S E + ++A AL+N+A+ G+ +EAGALE L QL +E ++
Sbjct: 187 QLLSSPN-EQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQ 239
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 14/206 (6%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L+ L+ S E + + A L+ +E +AV+ G + L+ L S E
Sbjct: 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQI-------QAVIDAGALPALVQLLSSPNE 110
Query: 443 GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-E 500
+ EA A++N++ + +AV + G + L L S N + +EA L N++ G
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHAL 559
E A+ DAG + ALV L+ SS + +L+ A AL+N+A+ ++ V AG + L
Sbjct: 171 EQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 227
Query: 560 VMLARSCKFEGVQEQAARALANLAAH 585
L E +Q++A AL L +H
Sbjct: 228 EQLQSHEN-EKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-32
Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 10/202 (4%)
Query: 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVL 477
G + + S Q A + + + S + +AV + G + L L
Sbjct: 3 GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62
Query: 478 ARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536
S N + +EA L N++ G E A+ DAG + ALV L+ SS + +L+ A A
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWA 119
Query: 537 LANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595
L+N+A+ ++ V AG + ALV L S + + ++A AL+N+A+ +
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASG---GNEQIQA 175
Query: 596 GQEAGALEALVQLTRSPHEGVR 617
+AGAL ALVQL SP+E +
Sbjct: 176 VIDAGALPALVQLLSSPNEQIL 197
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 3e-39
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 15/242 (6%)
Query: 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438
G +++L+ T L N E+ ++ GG + L+++ +
Sbjct: 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK-------LIILASGGPQALVNIMR 192
Query: 439 SWR-EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497
++ E L ++ + LSV + A+ E GG+ L + ++ + + L NLS
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252
Query: 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGV 556
+ G + LV L+ S V+ AAG L+NL + K M V GG+
Sbjct: 253 --DAATKQEGMEGLLGTLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
Query: 557 HALV-MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
ALV + R+ E + E A AL +L + + L +V+L P
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 616 VR 617
Sbjct: 368 PL 369
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 51/237 (21%), Positives = 93/237 (39%), Gaps = 17/237 (7%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWRE 442
L L+ + V +AA + + + R + + ++ + +
Sbjct: 19 LTKLLNDEDQVVVNKAAVMVHQL-------SKKEASRHAIMRSPQMVSAIVRTMQNTNDV 71
Query: 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE- 501
A + NLS + + A+ + GGI L + S V A L NL + +E
Sbjct: 72 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 131
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALV 560
K A+ AGG++ +V L+ + L L LA ++ + + +GG ALV
Sbjct: 132 AKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188
Query: 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ R+ +E + +R L L+ S+N EAG ++AL P + +
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVLS----VCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 3e-32
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 18/237 (7%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
++ MQ+T + R G + + E A+ K GGI L+ + S +
Sbjct: 60 AIVRTMQNTNDVETARCTAGTLHNLSHHREG-------LLAIFKSGGIPALVKMLGSPVD 112
Query: 443 GLQSEAAKAIANLSVNAKVAK-AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-E 500
+ A + NL ++ + AK AV GG+ + L N L L+ G +
Sbjct: 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560
E K I +GG +ALV+++ + + +L + L L+ + AGG+ AL
Sbjct: 173 ESKLIILASGGPQALVNIMR--TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 230
Query: 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ + + + L NL+ + G L LVQL S V
Sbjct: 231 LHLTDPS-QRLVQNCLWTLRNLSDA------ATKQEGMEGLLGTLVQLLGSDDINVV 280
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-32
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 10/197 (5%)
Query: 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI--NILAVL 477
+ +A + I L L + + ++AA + LS A+ + I+ +
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65
Query: 478 ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537
+ + A AG L NLS E AI +GG+ ALV ++ S D VL A L
Sbjct: 66 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML---GSPVDSVLFYAITTL 122
Query: 538 ANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVG 596
NL + M V LAGG+ +V L L LA N + +
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILA---YGNQESKLII 178
Query: 597 QEAGALEALVQLTRSPH 613
+G +ALV + R+
Sbjct: 179 LASGGPQALVNIMRTYT 195
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-31
Identities = 54/256 (21%), Positives = 97/256 (37%), Gaps = 18/256 (7%)
Query: 361 LLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGR 420
L + +GL + G L+ ++ S + V A T L ++ +
Sbjct: 80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA------- 132
Query: 421 AEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR 479
AV GG++ ++ L + + L+ N + + GG L + R
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192
Query: 480 SMN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538
+ + + L LSV +K AI +AGG++AL + + +++ L
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL---TDPSQRLVQNCLWTLR 249
Query: 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598
NL+ + + G + LV L S V AA L+NL + N N + +
Sbjct: 250 NLSDAATK--QEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCN---NYKNKMMVCQ 303
Query: 599 AGALEALVQLTRSPHE 614
G +EALV+ +
Sbjct: 304 VGGIEALVRTVLRAGD 319
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 2e-26
Identities = 48/258 (18%), Positives = 81/258 (31%), Gaps = 37/258 (14%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-R 441
+ L +ED+ E A L + E AV G+ +++ L
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMA----QNAVRLHYGLPVVVKLLHPPSH 366
Query: 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMN------------------- 482
L I NL++ + E+G I L L +
Sbjct: 367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426
Query: 483 ---RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
+ E G L L+ ++ I + V L+ S + + AAG L
Sbjct: 427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL---YSPIENIQRVAAGVLCE 483
Query: 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599
LA D + + + G L L S + EGV AA L ++ + ++
Sbjct: 484 LAQDKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMS------EDKPQDYKKR 536
Query: 600 GALEALVQLTRSPHEGVR 617
++E L R+
Sbjct: 537 LSVELTSSLFRTEPMAWN 554
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 6e-14
Identities = 36/177 (20%), Positives = 58/177 (32%), Gaps = 19/177 (10%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDE--------------NASIDCGRAEAVMKDG 428
L+ L+ +D Q R + G + + D +
Sbjct: 398 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 457
Query: 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEE 488
I L + L S E +Q AA + L+ + + A+A+ EG L L S N VA
Sbjct: 458 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517
Query: 489 AAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545
AA L+ +S + V+ L + + E A L A +
Sbjct: 518 AAAVLFRMSEDKPQD--YKKRLSVELTSSL---FRTEPMAWNETADLGLDIGAQGEP 569
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 5e-38
Identities = 54/242 (22%), Positives = 95/242 (39%), Gaps = 15/242 (6%)
Query: 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438
G +++L+ T L N E+ ++ GG + L+++ +
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK-------LIILASGGPQALVNIMR 328
Query: 439 SWR-EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497
++ E L ++ + LSV + A+ E GG+ L + ++ + + L NLS
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 388
Query: 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGV 556
+ G + LV L+ S V+ AAG L+NL ++ K M V GG+
Sbjct: 389 DAATKQ--EGMEGLLGTLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443
Query: 557 HALV-MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
ALV + R+ E + E A AL +L + + L +V+L P
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503
Query: 616 VR 617
Sbjct: 504 PL 505
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-35
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 17/237 (7%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWRE 442
L L+ + V +AA + + + R + + ++ + +
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQL-------SKKEASRHAIMRSPQMVSAIVRTMQNTNDV 207
Query: 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH 502
+ + NLS + + A+ + GGI L + S V A L NL + +E
Sbjct: 208 ETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267
Query: 503 -KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALV 560
K A+ AGG++ +V L+ + L L LA ++ + + +GG ALV
Sbjct: 268 AKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 324
Query: 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ R+ +E + +R L L+ S+N EAG ++AL P + +
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLS----VCSSNKPAIVEAGGMQALGLHLTDPSQRLV 377
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-32
Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 18/256 (7%)
Query: 361 LLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGR 420
L + +GL + G L++++ S + V A T L ++ +
Sbjct: 216 TLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA------- 268
Query: 421 AEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLAR 479
AV GG++ ++ L + + L+ N + + GG L + R
Sbjct: 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 328
Query: 480 SMN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538
+ + + L LSV +K AI +AGG++AL + + +++ L
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL---TDPSQRLVQNCLWTLR 385
Query: 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598
NL+ D + + + G + LV L S V AA L+NL + N N + +
Sbjct: 386 NLS--DAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCN---NYKNKMMVCQ 439
Query: 599 AGALEALVQLTRSPHE 614
G +EALV+ +
Sbjct: 440 VGGIEALVRTVLRAGD 455
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 5e-32
Identities = 57/243 (23%), Positives = 93/243 (38%), Gaps = 17/243 (6%)
Query: 376 WLKQGAGLLLSLMQSTQEDVQERAA--TGLATFVVINDENASIDCGRAEAVMKDGGIRLL 433
L +G + + S +R A + + V+N N D A + I L
Sbjct: 101 TLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDD-----AELATRAIPEL 155
Query: 434 LDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINIL-AVLARSMNRLVAEEAAG 491
L + + ++AA + LS A + ++ + + + + A +G
Sbjct: 156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSG 215
Query: 492 GLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEV 550
L NLS E AI +GG+ ALV+++ S D VL A L NL + M V
Sbjct: 216 TLHNLSHHREGLLAIFKSGGIPALVNML---GSPVDSVLFHAITTLHNLLLHQEGAKMAV 272
Query: 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610
LAGG+ +V L + L LA N + + +G +ALV + R
Sbjct: 273 RLAGGLQKMVALLNKTNVK-FLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMR 328
Query: 611 SPH 613
+
Sbjct: 329 TYT 331
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 8e-29
Identities = 59/267 (22%), Positives = 96/267 (35%), Gaps = 38/267 (14%)
Query: 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL 436
++ G L+ L+ S +V AA L+ N +N V + GGI L+
Sbjct: 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK-------MMVCQVGGIEALVRT 449
Query: 437 --AKSWREGLQSEAAKAIANLSVNA----KVAKAVAEEGGINILAVLARSMNRLVAEEAA 490
RE + A A+ +L+ AV G+ ++ L + +A
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 509
Query: 491 GGLW-NLSVGEEHKGAIADAGGVKALVDLIFKWSSGG-------------------DGVL 530
GL NL++ + + + G + LV L+ + + ++
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Query: 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590
E GAL LA D + + + V L S E +Q AA L LA +
Sbjct: 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQDKE--- 625
Query: 591 NNSAVGQEAGALEALVQLTRSPHEGVR 617
A+ GA L +L S +EGV
Sbjct: 626 AAEAIE-AEGATAPLTELLHSRNEGVA 651
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 3e-18
Identities = 46/292 (15%), Positives = 87/292 (29%), Gaps = 44/292 (15%)
Query: 355 WILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENA 414
L H+ R ++ + L G +++ L+ +A GL + + N
Sbjct: 465 CALRHLTSRHQDAEMA-QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523
Query: 415 SIDCGRAEAVMKDGGIRLLLDLAKS----------------------WREGLQSEAAKAI 452
+ + G I L+ L E + A+
Sbjct: 524 -------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL 576
Query: 453 ANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512
L+ + + I + L S + AAG L L+ +E AI G
Sbjct: 577 HILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 636
Query: 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARS------- 565
L +L+ S +GV AA L ++ D + V L R+
Sbjct: 637 APLTELL---HSRNEGVATYAAAVLFRMSEDK--PQDYKKRLSVELTSSLFRTEPMTWNE 691
Query: 566 --CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615
+ Q + ++ GQ+A ++ +++ + H
Sbjct: 692 TGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHEMAGHHP 743
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 8e-38
Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 15/238 (6%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR- 441
+++L+ T L N E+ ++ GG + L+++ +++
Sbjct: 147 KMVALLNKTNVKFLAITTDCLQILAYGNQESK-------LIILASGGPQALVNIMRTYTY 199
Query: 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE 501
E L ++ + LSV + A+ E GG+ L + ++ + + L NLS +
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--DA 257
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALV 560
G + LV L+ S V+ AAG L+NL + K M V GG+ ALV
Sbjct: 258 ATKQEGMEGLLGTLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314
Query: 561 -MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ R+ E + E A AL +L + + L +V+L P
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 3e-34
Identities = 51/237 (21%), Positives = 92/237 (38%), Gaps = 17/237 (7%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWRE 442
L L+ + V +AA + + + R + + ++ + +
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQL-------SKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74
Query: 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EE 501
A + NLS + + A+ + GGI L + S V A L NL + E
Sbjct: 75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALV 560
K A+ AGG++ +V L+ + L L LA ++ + + +GG ALV
Sbjct: 135 AKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ R+ +E + +R L L+ S+N EAG ++AL P + +
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLS----VCSSNKPAIVEAGGMQALGLHLTDPSQRLV 244
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 8e-32
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 10/195 (5%)
Query: 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI--NILAVLAR 479
+A + I L L + + ++AA + LS A+ + I+ +
Sbjct: 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 480 SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
+ + A AG L NLS E AI +GG+ ALV ++ S D VL A L N
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML---GSPVDSVLFYAITTLHN 127
Query: 540 LAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598
L + M V LAGG+ +V L + L LA N + +
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-FLAITTDCLQILAY---GNQESKLIILA 183
Query: 599 AGALEALVQLTRSPH 613
+G +ALV + R+
Sbjct: 184 SGGPQALVNIMRTYT 198
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-31
Identities = 54/237 (22%), Positives = 91/237 (38%), Gaps = 18/237 (7%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
++ MQ+T + R G + + E A+ K GGI L+ + S +
Sbjct: 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREG-------LLAIFKSGGIPALVKMLGSPVD 115
Query: 443 GLQSEAAKAIANLSVNAKVAK-AVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-E 500
+ A + NL ++ + AK AV GG+ + L N L L+ G +
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560
E K I +GG +ALV+++ + + +L + L L+ + AGG+ AL
Sbjct: 176 ESKLIILASGGPQALVNIMR--TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 233
Query: 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ + + + L NL+ + G L LVQL S V
Sbjct: 234 LHLTDPS-QRLVQNCLWTLRNLS------DAATKQEGMEGLLGTLVQLLGSDDINVV 283
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-30
Identities = 55/255 (21%), Positives = 99/255 (38%), Gaps = 18/255 (7%)
Query: 362 LRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRA 421
L + +GL + G L+ ++ S + V A T L ++ +
Sbjct: 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------K 136
Query: 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS 480
AV GG++ ++ L + + L+ N + + GG L + R+
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196
Query: 481 MN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
+ + L LSV +K AI +AGG++AL + + +++ L N
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL---TDPSQRLVQNCLWTLRN 253
Query: 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599
L+ D + + + G + LV L S V AA L+NL + N N + +
Sbjct: 254 LS--DAATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGILSNLTCN---NYKNKMMVCQV 307
Query: 600 GALEALVQLTRSPHE 614
G +EALV+ +
Sbjct: 308 GGIEALVRTVLRAGD 322
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 38/260 (14%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL--AKSWR 441
L+ L+ S +V AA L+ N +N V + GGI L+ R
Sbjct: 271 LVQLLGSDDINVVTCAAGILSNLTCNNYKNK-------MMVCQVGGIEALVRTVLRAGDR 323
Query: 442 EGLQSEAAKAIANLSVNAKVAK----AVAEEGGINILAVLARSMNRLVAEEAAGGLW-NL 496
E + A A+ +L+ + A+ AV G+ ++ L + +A GL NL
Sbjct: 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 383
Query: 497 SVGEEHKGAIADAGGVKALVDL-------------------IFKWSSGGDGVLERAAGAL 537
++ + + + G + LV L F + ++E GAL
Sbjct: 384 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443
Query: 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597
LA D + + + V L S +Q AA L LA + A+
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIEN-IQRVAAGVLCELAQDKE---AAEAIE- 498
Query: 598 EAGALEALVQLTRSPHEGVR 617
GA L +L S +EGV
Sbjct: 499 AEGATAPLTELLHSRNEGVA 518
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 50/262 (19%), Positives = 86/262 (32%), Gaps = 44/262 (16%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
L + + + + L ++ + +G + L+ L S
Sbjct: 232 LGLHLTDPSQRLVQNCLWTLR----------NLSDAATKQEGMEGLLGTLVQLLGSDDIN 281
Query: 444 LQSEAAKAIANLSVNAKVAK-AVAEEGGINIL--AVLARSMNRLVAEEAAGGLWNLSVG- 499
+ + AA ++NL+ N K V + GGI L VL + E A L +L+
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 500 ---EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGV 556
E + A+ G+ +V L+ +++ G + NLA + G +
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLL--HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAI 399
Query: 557 HALVMLARSC---------------------KFEGVQEQAARALANLAAHGDSNSNNSAV 595
LV L + E + E AL LA N V
Sbjct: 400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH----NRIV 455
Query: 596 GQEAGALEALVQLTRSPHEGVR 617
+ + VQL SP E ++
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQ 477
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 45/224 (20%), Positives = 72/224 (32%), Gaps = 31/224 (13%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-R 441
+ L +ED+ E A L + E AV G+ +++ L
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMA----QNAVRLHYGLPVVVKLLHPPSH 369
Query: 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMN------------------- 482
L I NL++ + E+G I L L +
Sbjct: 370 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429
Query: 483 ---RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
+ E G L L+ ++ I + V L+ S + + AAG L
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL---YSPIENIQRVAAGVLCE 486
Query: 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583
LA D + + + G L L S + EGV AA L ++
Sbjct: 487 LAQDKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHAL 559
A + L L+ + V+ +AA + L+ + + V A+
Sbjct: 8 YQDDAELATRAIPELTKLL---NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64
Query: 560 VMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
V ++ A L NL+ + ++G + ALV++ SP + V
Sbjct: 65 VRTMQNTNDVETARCTAGTLHNLS----HHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-32
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 14/205 (6%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
++ + S + + A L+ +E +AV+ G + L+ L S E
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQI-------QAVIDAGALPALVQLLSSPNEQ 69
Query: 444 LQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EE 501
+ EA A++N++ + +AV + G + L L S N + +EA L N++ G E
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALV 560
A+ DAG + ALV L+ SS + +L+ A AL+N+A+ ++ V AG + L
Sbjct: 130 QIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 561 MLARSCKFEGVQEQAARALANLAAH 585
L + E +Q++A AL L +H
Sbjct: 187 QLQSH-ENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query: 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVL 477
G + ++ S + A + ++ ++ + +AV + G + L L
Sbjct: 3 GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62
Query: 478 ARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536
S N + +EA L N++ G E A+ DAG + ALV L+ SS + +L+ A A
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWA 119
Query: 537 LANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595
L+N+A+ ++ V AG + ALV L S + + ++A AL+N+A+ G+
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGN---EQKQA 175
Query: 596 GQEAGALEALVQLTRSPHEGVR 617
+EAGALE L QL +E ++
Sbjct: 176 VKEAGALEKLEQLQSHENEKIQ 197
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 9e-15
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHA 558
+ +V + +S L+ A L+ +A+ ++ V AG + A
Sbjct: 2 RGSHHHHHHGSELPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPA 58
Query: 559 LVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
LV L S E + ++A AL+N+A+ + +AGAL ALVQL SP+E +
Sbjct: 59 LVQLLSSPN-EQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSSPNEQIL 113
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L+ L+ S E + + A L+ +E +AV+ G + L+ L S E
Sbjct: 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQ-------IQAVIDAGALPALVQLLSSPNE 152
Query: 443 GLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS 497
+ EA A++N+ S + +AV E G + L L N + +EA L L
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 20/216 (9%)
Query: 417 DCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV 476
+ + G+ + + E A + LS + + A+ E GG+ +A
Sbjct: 21 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80
Query: 477 LARS-----------MNRLVAEEAAGGLWNLSVGEEHKGA--IADAGGVKALVDLIFKWS 523
L + + + A L NL+ G+ A + G ++ALV +
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL---K 137
Query: 524 SGGDGVLERAAGALANLA--ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALAN 581
S + + + A L NL+ AD + G V AL+ A K E + AL N
Sbjct: 138 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197
Query: 582 LAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
L+AH N + + GAL LV +
Sbjct: 198 LSAHCT--ENKADICAVDGALAFLVGTLTYRSQTNT 231
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 53/251 (21%), Positives = 87/251 (34%), Gaps = 20/251 (7%)
Query: 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL 436
L+ + ++ A L + N +A G +R L+
Sbjct: 82 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN------KATLCSMKGCMRALVAQ 135
Query: 437 AKSWREGLQSEAAKAIANLS--VNAKVAKAVAEEGGINILAVLARSMNRL-VAEEAAGGL 493
KS E LQ A + NLS + K + E G + L A + + + L
Sbjct: 136 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 195
Query: 494 WNLSV-GEEHKGAIADA-GGVKALVDLIFKWSSGGD-GVLERAAGALANL----AADDKC 546
WNLS E+K I G + LV + S ++E G L N+ A ++
Sbjct: 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255
Query: 547 SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606
+ + L+ +S + A L NL+A N + + GA+ L
Sbjct: 256 RQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSA---RNPKDQEALWDMGAVSMLK 311
Query: 607 QLTRSPHEGVR 617
L S H+ +
Sbjct: 312 NLIHSKHKMIA 322
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-28
Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 22/234 (9%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA-KSWR 441
L++ ++S ED+Q+ A+ L D N+ + + + G ++ L++ A + +
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSK------KTLREVGSVKALMECALEVKK 184
Query: 442 EGLQSEAAKAIANLSVN--AKVAKAVAEEGGI----NILAVLARSMNRLVAEEAAGGLWN 495
E A+ NLS + A A +G + L +++ + E G L N
Sbjct: 185 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 244
Query: 496 LS----VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME-V 550
+S E+H+ + + ++ L+ + S ++ A G L NL+A + E +
Sbjct: 245 VSSLIATNEDHRQILRENNCLQTLLQHL---KSHSLTIVSNACGTLWNLSARNPKDQEAL 301
Query: 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604
G V L L S + + +A AL NL A+ + ++ + +L +
Sbjct: 302 WDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 50/254 (19%), Positives = 96/254 (37%), Gaps = 30/254 (11%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
+ M + E A L ++E+ A+ + GG++ + +L + E
Sbjct: 37 DKNPMPAPVEHQICPAVCVLMKLSF-DEEHRH-------AMNELGGLQAIAELLQVDCEM 88
Query: 444 -----------LQSEAAKAIANLSVNAKVAKA--VAEEGGINILAVLARSMNRLVAEEAA 490
L+ A A+ NL+ KA + +G + L +S + + + A
Sbjct: 89 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148
Query: 491 GGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKC 546
L NLS K + + G VKAL++ + L+ AL NL+A +
Sbjct: 149 SVLRNLSWRADVNSKKTLREVGSVKALMECAL--EVKKESTLKSVLSALWNLSAHCTENK 206
Query: 547 SMEVALAGGVHALVMLARSC---KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603
+ A+ G + LV + E L N+++ +N ++ + +E L+
Sbjct: 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 266
Query: 604 ALVQLTRSPHEGVR 617
L+Q +S +
Sbjct: 267 TLLQHLKSHSLTIV 280
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 3e-30
Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 22/256 (8%)
Query: 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL 436
+ + L +++ S +D + R + ++ A + + G+ +
Sbjct: 99 RARASAALHNIIHSQPDDKRGRREIRVLH--LLEQIRAYCETCWEWQEAHEPGMDQDKNP 156
Query: 437 AKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS-----------MNRLV 485
+ E A + LS + + A+ E GG+ +A L + + +
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216
Query: 486 AEEAAGGLWNLSVGEEHKGA--IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA-- 541
A L NL+ G+ A + G ++ALV + S + + + A L NL+
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL---KSESEDLQQVIASVLRNLSWR 273
Query: 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGA 601
AD + G V AL+ A K E + AL NL+AH N + + GA
Sbjct: 274 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGA 331
Query: 602 LEALVQLTRSPHEGVR 617
L LV +
Sbjct: 332 LAFLVGTLTYRSQTNT 347
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 3e-29
Identities = 55/251 (21%), Positives = 88/251 (35%), Gaps = 20/251 (7%)
Query: 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL 436
L+ + ++ A L + N +A G +R L+
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN------KATLCSMKGCMRALVAQ 251
Query: 437 AKSWREGLQSEAAKAIANLSVNAKVA--KAVAEEGGINILAVLARSMNRL-VAEEAAGGL 493
KS E LQ A + NLS A V K + E G + L A + + + L
Sbjct: 252 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311
Query: 494 WNLSV-GEEHKGAIADA-GGVKALVDLIFKWSSGGD-GVLERAAGALANL----AADDKC 546
WNLS E+K I G + LV + S ++E G L N+ A ++
Sbjct: 312 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371
Query: 547 SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606
+ + L+ +S + A L NL+A N + + GA+ L
Sbjct: 372 RQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSA---RNPKDQEALWDMGAVSMLK 427
Query: 607 QLTRSPHEGVR 617
L S H+ +
Sbjct: 428 NLIHSKHKMIA 438
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 6e-26
Identities = 51/259 (19%), Positives = 97/259 (37%), Gaps = 30/259 (11%)
Query: 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK 438
G + M + E A L ++E+ A+ + GG++ + +L +
Sbjct: 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHR-------HAMNELGGLQAIAELLQ 199
Query: 439 SWRE-----------GLQSEAAKAIANLSVNAKVAKA--VAEEGGINILAVLARSMNRLV 485
E L+ A A+ NL+ KA + +G + L +S + +
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDL 259
Query: 486 AEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA- 542
+ A L NLS K + + G VKAL++ + L+ AL NL+A
Sbjct: 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL--EVKKESTLKSVLSALWNLSAH 317
Query: 543 -DDKCSMEVALAGGVHALVMLARSC---KFEGVQEQAARALANLAAHGDSNSNNSAVGQE 598
+ + A+ G + LV + E L N+++ +N ++ + +E
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377
Query: 599 AGALEALVQLTRSPHEGVR 617
L+ L+Q +S +
Sbjct: 378 NNCLQTLLQHLKSHSLTIV 396
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 7e-26
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 22/214 (10%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA-KSWRE 442
L++ ++S ED+Q+ A+ L D N+ + + + G ++ L++ A + +E
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNS------KKTLREVGSVKALMECALEVKKE 301
Query: 443 GLQSEAAKAIANLSVN--AKVAKAVAEEGGI----NILAVLARSMNRLVAEEAAGGLWNL 496
A+ NLS + A A +G + L +++ + E G L N+
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
Query: 497 S----VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME-VA 551
S E+H+ + + ++ L+ + S ++ A G L NL+A + E +
Sbjct: 362 SSLIATNEDHRQILRENNCLQTLLQHL---KSHSLTIVSNACGTLWNLSARNPKDQEALW 418
Query: 552 LAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585
G V L L S + + +A AL NL A+
Sbjct: 419 DMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 3e-25
Identities = 46/253 (18%), Positives = 94/253 (37%), Gaps = 23/253 (9%)
Query: 381 AGLLLSLMQSTQEDVQERAATGLATFVVI----NDENASIDCGRAEAVMKDGGIRLLLDL 436
+ LL++ S + R + L + + + ++ + R + L ++
Sbjct: 50 SRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109
Query: 437 AKSWREGLQSEAAKAIANL------SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAA 490
S + + + +L A E G++ + A
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169
Query: 491 GGLWNLSVGEEHKGAIADAGGVKALVDLI--------FKWSSGGDGVLERAAGALANLAA 542
L LS EEH+ A+ + GG++A+ +L+ + A AL NL
Sbjct: 170 CVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229
Query: 543 DD--KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAG 600
D + ++ G + ALV +S + E +Q+ A L NL+ ++ N+ +E G
Sbjct: 230 GDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLS--WRADVNSKKTLREVG 286
Query: 601 ALEALVQLTRSPH 613
+++AL++
Sbjct: 287 SVKALMECALEVK 299
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-17
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 18/173 (10%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDL----AK 438
L+ ++ +E + + L EN +A+ DG + L+ ++
Sbjct: 291 LMECALEVKKESTLKSVLSALWNLSAHCTEN------KADICAVDGALAFLVGTLTYRSQ 344
Query: 439 SWREGLQSEAAKAIANLS----VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW 494
+ + + N+S N + + E + L +S + + A G LW
Sbjct: 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404
Query: 495 NLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC 546
NLS + + A+ D G V L +LI S + +A AL NL A+
Sbjct: 405 NLSARNPKDQEALWDMGAVSMLKNLI---HSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 2e-15
Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 46/217 (21%)
Query: 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVL------------ARSMNRLVAEEAAGG 492
+ + ++ + +S + ++ + G + +L L ++ A+
Sbjct: 46 KDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105
Query: 493 LWNLSVGEEHKGAIADAGGVKALVDLIFKWS----------------------SGGDGVL 530
L N+ + V L++ I + + + +
Sbjct: 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQI 165
Query: 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSC----------KFEGVQEQAARALA 580
A L L+ D++ + GG+ A+ L + ++ A AL
Sbjct: 166 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225
Query: 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
NL GD N + + G + ALV +S E ++
Sbjct: 226 NL-TFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQ 260
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 381 AGLLLSLMQSTQEDVQERAAT---GLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA 437
G L Q+ + E +++ + N+++ + + ++ ++ LL
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR-------QILRENNCLQTLLQHL 388
Query: 438 KSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL 496
KS + S A + NLS N K +A+ + G +++L L S ++++A +A L NL
Sbjct: 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448
Query: 497 SVGEEHK 503
K
Sbjct: 449 MANRPAK 455
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 22/268 (8%)
Query: 33 EKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDI 92
E V W SLPD+ ++ + SCL + +S C+ W L + LW +LDL
Sbjct: 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP 61
Query: 93 AMAASLASRCMNLQKLRFRGAESADSI-IHLQARNLRELSGDYCRKITDATLSVIVARHE 151
+ L S+ + R + + H ++ + I +TL I+++
Sbjct: 62 DVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCS 118
Query: 152 ALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIG 211
L++L L + R++ V +A L +L LSG A+ L C L ++
Sbjct: 119 KLQNLSL--EGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174
Query: 212 FLDCLNVDEVALGNVL-----SVRFLSVAG-TSNMKWGVVSQVWHKLPKLVGLDVSR--- 262
C + E + + ++ L+++G N++ +S + + P LV LD+S
Sbjct: 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234
Query: 263 -TDVGPITISRLLTSSKSLKVLCALNCP 289
+ +L L+ L C
Sbjct: 235 LKNDCFQEFFQL----NYLQHLSLSRCY 258
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 14/123 (11%)
Query: 96 ASLASRCMNLQKLRFRGAE--SADSIIHL-QARNLRELSGDYCRKITDATLSVIVARHEA 152
++L RC NL L + D Q L+ LS C I TL +
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPT 273
Query: 153 LESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGF 212
L++LQ+ + ++ + P L ++ S I A + +I
Sbjct: 274 LKTLQV----FGIVPDGTLQLLKEALPHL-QINCSHFTTI---ARPTIGNKK--NQEIWG 323
Query: 213 LDC 215
+ C
Sbjct: 324 IKC 326
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 6e-28
Identities = 49/239 (20%), Positives = 89/239 (37%), Gaps = 15/239 (6%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWR 441
++ ++ S + Q A + + N ID E + G + ++ L +
Sbjct: 24 DMIEMIFSKSPEQQLSATQKFRKL-LSKEPNPPID----EVISTPGVVARFVEFLKRKEN 78
Query: 442 EGLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-G 499
LQ E+A + N+ S N+ + V + G + I L S V E+A L N++
Sbjct: 79 CTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS 138
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME-VALAGGVHA 558
+ + D + L+ L K + + A AL+NL E ++ ++
Sbjct: 139 TMCRDYVLDCNILPPLLQLFSKQNRL--TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 559 LVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
L L + V A AL+ L+ ++ +AG LV+L V
Sbjct: 197 LSWLLFVSDTD-VLADACWALSYLSDG---PNDKIQAVIDAGVCRRLVELLMHNDYKVV 251
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 53/239 (22%), Positives = 95/239 (39%), Gaps = 18/239 (7%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-R 441
+ + L+ S EDVQE+A L + + V+ + LL L R
Sbjct: 111 IFIELLSSEFEDVQEQAVWALGNIAGDSTMCR-------DYVLDCNILPPLLQLFSKQNR 163
Query: 442 EGLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG- 499
+ A A++NL + +N+L+ L + V +A L LS G
Sbjct: 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHA 558
+ A+ DAG + LV+L+ V+ A A+ N+ DD + + + +
Sbjct: 224 NDKIQAVIDAGVCRRLVELL---MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQS 280
Query: 559 LVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
L+ L S K E ++++A ++N+ A N +A AL+ + ++ R
Sbjct: 281 LLHLLSSPK-ESIKKEACWTISNITAG---NRAQIQTVIDANIFPALISILQTAEFRTR 335
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 4e-22
Identities = 44/238 (18%), Positives = 87/238 (36%), Gaps = 15/238 (6%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
LL L R A + + E + +L L
Sbjct: 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSP------PPEFAKVSPCLNVLSWLLFVSDT 206
Query: 443 GLQSEAAKAIANLS-VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-E 500
+ ++A A++ LS +AV + G L L + V A + N+ G +
Sbjct: 207 DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD 266
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHAL 559
I + +++L+ L+ SS + + + A ++N+ A ++ V A AL
Sbjct: 267 IQTQVILNCSALQSLLHLL---SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 560 VMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ + ++ +F +++AA A+ N + G + V E G ++ L L +
Sbjct: 324 ISILQTAEFR-TRKEAAWAITNATSGGSAEQIKYLV--ELGCIKPLCDLLTVMDSKIV 378
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 10/168 (5%)
Query: 451 AIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE---HKGAIA 507
A+ + + + + S + A L E I+
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSC 566
G V V+ + + +A L N+A+ + + + AG V + L S
Sbjct: 62 TPGVVARFVEFL--KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE 119
Query: 567 KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614
+ VQEQA AL N+A + + L L+QL +
Sbjct: 120 FED-VQEQAVWALGNIAGDSTMCRDYVL---DCNILPPLLQLFSKQNR 163
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 6e-10
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 9/130 (6%)
Query: 491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS--- 547
G + + ++++IF S A L + +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIF---SKSPEQQLSATQKFRKLLSKEPNPPID 57
Query: 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607
++ G V V + + +Q ++A L N+A+ NS + + +AGA+ ++
Sbjct: 58 EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG---NSLQTRIVIQAGAVPIFIE 114
Query: 608 LTRSPHEGVR 617
L S E V+
Sbjct: 115 LLSSEFEDVQ 124
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 5e-27
Identities = 47/240 (19%), Positives = 95/240 (39%), Gaps = 16/240 (6%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGI-RLLLDLAKSWRE 442
++ + S + Q +A + + + +++ G I + + L K+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPP------IDNIIRAGLIPKFVSFLGKTDCS 115
Query: 443 GLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GE 500
+Q E+A A+ N+ S ++ KAV + G I L S + ++E+A L N++ G
Sbjct: 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175
Query: 501 EHKGAIADAGGVKALVDLI--FKWSSGGDGVLERAAGALANLAADDKCSME-VALAGGVH 557
+ + G + L+ L+ S+ G L L+NL + + A+ +
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235
Query: 558 ALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
LV L E V + A++ L D + + + G + LV+L + +
Sbjct: 236 TLVRLLHHNDPE-VLADSCWAISYLT---DGPNERIEMVVKKGVVPQLVKLLGATELPIV 291
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-23
Identities = 47/266 (17%), Positives = 93/266 (34%), Gaps = 15/266 (5%)
Query: 355 WILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENA 414
W L +I A D LL+L+ T+ + N
Sbjct: 165 WALGNI----AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 415 SIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLS-VNAKVAKAVAEEGGINI 473
+ + L+ L + +++ AI+ L+ + + V ++G +
Sbjct: 221 KNP--APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQ 278
Query: 474 LAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532
L L + + A + N+ G +E + DAG + L+ ++ + +
Sbjct: 279 LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL---TNPKTNIQKE 335
Query: 533 AAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591
A ++N+ A + +V G V LV + F+ Q++AA A+ N + G
Sbjct: 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK-TQKEAAWAITNYTSGGTVEQI 394
Query: 592 NSAVGQEAGALEALVQLTRSPHEGVR 617
V G +E L+ L + +
Sbjct: 395 VYLV--HCGIIEPLMNLLSAKDTKII 418
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 8/125 (6%)
Query: 495 NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA--DDKCSMEVAL 552
+ ++ + V+ +V I S +A A L + +
Sbjct: 42 DKAMADIGSNQGTVNWSVEDIVKGIN---SNNLESQLQATQAARKLLSREKQPPIDNIIR 98
Query: 553 AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612
AG + V +Q ++A AL N+A+ S + + GA+ A + L SP
Sbjct: 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASG---TSEQTKAVVDGGAIPAFISLLASP 155
Query: 613 HEGVR 617
H +
Sbjct: 156 HAHIS 160
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 9e-27
Identities = 41/238 (17%), Positives = 87/238 (36%), Gaps = 17/238 (7%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWRE 442
+ + S Q A + + V++ G + L++ + ++ E
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRP------PIDVVIQAGVVPRLVEFMRENQPE 145
Query: 443 GLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GE 500
LQ EAA A+ N+ S + K V + + + L + + V E+A L N++
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 205
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSME-VALAGGVHAL 559
+++ + ++ ++ L +S ++ A L+NL K + ++ + L
Sbjct: 206 DYRDYVLQCNAMEPILGLF---NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262
Query: 560 VMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
L S A A++ L+ D + + LV+L V+
Sbjct: 263 AKLIYSMD-TETLVDACWAISYLS---DGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-24
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 17/238 (7%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L + L+ + +V+E+A L + + + V++ + +L L S +
Sbjct: 177 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR-------DYVLQCNAMEPILGLFNSNKP 229
Query: 443 GLQSEAAKAIANLSVNAK-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-E 500
L A ++NL K + LA L SM+ +A + LS G +
Sbjct: 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289
Query: 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-DDKCSMEVALAGGVHAL 559
E A+ D K LV+L+ S V A A+ N+ +D + V AG + AL
Sbjct: 290 EAIQAVIDVRIPKRLVELL---SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL 346
Query: 560 VMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+L S K E ++++A ++N+ A + AV +A + LV+L +
Sbjct: 347 RLLLSSPK-ENIKKEACWTISNITAG--NTEQIQAVI-DANLIPPLVKLLEVAEYKTK 400
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 9/175 (5%)
Query: 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EH 502
+ SV+A + + + S + A + E
Sbjct: 63 DGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP 122
Query: 503 KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA-ADDKCSMEVALAGGVHALVM 561
+ AG V LV+ + + + + AA AL N+A + V A V +
Sbjct: 123 IDVVIQAGVVPRLVEFM--RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ 180
Query: 562 LARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616
L + V+EQA AL N+A GDS V + A+E ++ L S +
Sbjct: 181 LLYT-GSVEVKEQAIWALGNVA--GDSTDYRDYVL-QCNAMEPILGLFNSNKPSL 231
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 26/178 (14%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L L+ S +E++++ A ++ N E +AV+ I L+ L +
Sbjct: 345 ALRLLLSSPKENIKKEACWTISNITAGNTEQI-------QAVIDANLIPPLVKLLEVAEY 397
Query: 443 GLQSEAAKAIANLSVNA----KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWN-LS 497
+ EA AI+N S + + + +G I L L + + E L N L
Sbjct: 398 KTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457
Query: 498 VGEEHKGA-----------IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD 544
+GE K A I AGG++ + + + D + E+A + ++
Sbjct: 458 MGEADKEARGLNINENADFIEKAGGMEKIFNCQ---QNENDKIYEKAYKIIETYFGEE 512
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 1e-23
Identities = 52/247 (21%), Positives = 91/247 (36%), Gaps = 24/247 (9%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
+ + S E Q A + ++ + V + GGI L+DL +S +
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAK-------QQVYQLGGICKLVDLLRSPNQN 59
Query: 444 LQSEAAKAIANLSVNAKVAK-AVAEEGGIN-ILAVLARSMNRLVAEEAAGGLWNLSVGEE 501
+Q AA A+ NL + K + GI +++L R+ N + ++ G LWNLS +E
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDG-------------VLERAAGALANLAADDKC-S 547
K + A + L D + SG V A G L NL++ D
Sbjct: 120 LKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178
Query: 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607
+G + +L+ ++C + + H S ++ V LE +
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238
Query: 608 LTRSPHE 614
+
Sbjct: 239 NAYTEKS 245
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 93.4 bits (231), Expect = 2e-20
Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 23/198 (11%)
Query: 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEE 488
I + S E Q+ A I + + + V + GGI L L RS N+ V +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 489 AAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547
AAG L NL +K G++ V L+ + +G + ++ G L NL++ D+
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR--TGNAEIQKQLTGLLWNLSSTDELK 121
Query: 548 MEVALAGGVHALVML---------------ARSCKFEGVQEQAARALANLAAHGDSNSNN 592
E+ A + L +R V A L NL++
Sbjct: 122 EELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA---GR 177
Query: 593 SAVGQEAGALEALVQLTR 610
+ +G +++L+ +
Sbjct: 178 QTMRNYSGLIDSLMAYVQ 195
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 1e-14
Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 19/227 (8%)
Query: 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-- 435
+ L + + E+++TG + N + DC E G L
Sbjct: 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283
Query: 436 --------LAKSWREGLQSEAAKAIANLSVNAKVA------KAVAEEGGINILAVLARSM 481
+ KS ++ A A+ NL+ + + +E G+ +A L +S
Sbjct: 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343
Query: 482 NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI--FKWSSGGDGVLERAAGALAN 539
N V A L N+S + + + L +S + +L A + N
Sbjct: 344 NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN 403
Query: 540 LAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585
L A + + + + ++ ++ L RS E A L+++ +
Sbjct: 404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 2e-14
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 10/141 (7%)
Query: 477 LARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535
S + A + + E K + GG+ LVDL+ S V + AAG
Sbjct: 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL---RSPNQNVQQAAAG 66
Query: 536 ALANLA-ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594
AL NL +E G+ V L R +Q+Q L NL S+++
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL-----SSTDELK 121
Query: 595 VGQEAGALEALVQLTRSPHEG 615
A AL L P G
Sbjct: 122 EELIADALPVLADRVIIPFSG 142
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 2e-14
Identities = 29/190 (15%), Positives = 67/190 (35%), Gaps = 9/190 (4%)
Query: 362 LRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRA 421
L E+NP+G + L+LM +++D A G + + S
Sbjct: 266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS-SGMSQ 324
Query: 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSM 481
+K+ G+ + L +S + A ++N+S + + + + + + +L
Sbjct: 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384
Query: 482 NRL-----VAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535
+ A + NL + + + +++L SS E A
Sbjct: 385 GNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR--SSASPKAAEAARL 442
Query: 536 ALANLAADDK 545
L+++ + +
Sbjct: 443 LLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 5e-13
Identities = 37/247 (14%), Positives = 82/247 (33%), Gaps = 28/247 (11%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWR 441
L+ L++S ++VQ+ AA L V + N + GIR + L ++
Sbjct: 48 KLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK-------LETRRQNGIREAVSLLRRTGN 100
Query: 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL----------------ARSMNRLV 485
+Q + + NLS K + +LA ++ V
Sbjct: 101 AEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159
Query: 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545
A G L NLS + + + + G+ + + +++ + +
Sbjct: 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219
Query: 546 CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605
++ + L AR+ ++ + +N + +N+ + + +E +
Sbjct: 220 YRLDAEVPTRYRQLEYNARN---AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276
Query: 606 VQLTRSP 612
L S
Sbjct: 277 GWLYHSD 283
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 9e-12
Identities = 35/250 (14%), Positives = 73/250 (29%), Gaps = 25/250 (10%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS--- 439
L++ +Q+ + + V+++ + +D + KS
Sbjct: 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248
Query: 440 -----WREGLQSEAAKAIANLSVNAKVAKAVAEEGGIN-ILAVLARSMNRLVAEEAAGGL 493
+ + + + N K + + I L ++ +S E AG L
Sbjct: 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308
Query: 494 WNLSVGEEHKG------AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547
NL+ + G+ + L+ SG V+ A L+N++
Sbjct: 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLL---QSGNSDVVRSGASLLSNMSRHPLLH 365
Query: 548 MEVALAGGVHALVMLARSCKF----EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603
+ +L E + A + NL S + + L
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM---ASQPQLAKQYFSSSMLN 422
Query: 604 ALVQLTRSPH 613
++ L RS
Sbjct: 423 NIINLCRSSA 432
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 7e-05
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439
G + L+QS DV A+ L+ + + + V + L +
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSN-MSRHPLLHRV---MGNQVFPEVTRLLTSHTGNT 387
Query: 440 WR-EGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNL 496
E + S A + NL ++AK +N + L RS + AE A L ++
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
Query: 497 SVGEEHKGAI 506
+E +G +
Sbjct: 448 WSSKELQGVL 457
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 99.3 bits (246), Expect = 5e-22
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 25/215 (11%)
Query: 417 DCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKA-VAEEGGINILA 475
G + + ++ + + ++S AA + +L K V + GI +L
Sbjct: 37 KGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLV 96
Query: 476 VLARSMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533
L + V A G L N+S G +++K AI + GV ALV L+ K + E
Sbjct: 97 GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD--MDLTEVI 154
Query: 534 AGALANLAADDKCSMEVALAGGVHALVML-----------------ARSCKFEGVQEQAA 576
G L NL++ D ME+ +HAL R ++E V A
Sbjct: 155 TGTLWNLSSHDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTA 213
Query: 577 RALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611
L N+++ + + G ++AL+ + ++
Sbjct: 214 GCLRNVSSERSEARR--KLRECDGLVDALIFIVQA 246
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 91.2 bits (225), Expect = 2e-19
Identities = 55/266 (20%), Positives = 93/266 (34%), Gaps = 35/266 (13%)
Query: 359 HILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDC 418
L + P W + +++++ + V+ AA L ND+
Sbjct: 30 ASLDSLRKGGPP--PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV----- 82
Query: 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV--NAKVAKAVAEEGGINILAV 476
V K GI +L+ L ++ + A A+ N+S + A+ G+ L
Sbjct: 83 --KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140
Query: 477 LARSMNRL-VAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDG------- 528
L R + + E G LWNLS + K I + AL D + SG +
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCK 199
Query: 529 --------VLERAAGALANLAA--DDKCSMEVALAGGVHALVMLARSCKFEG-----VQE 573
VL AG L N+++ + G V AL+ + ++ + + E
Sbjct: 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVE 259
Query: 574 QAARALANLAAHGDSNSNNSAVGQEA 599
L NL+ + QEA
Sbjct: 260 NCVCLLRNLSYQVHREIPQAERYQEA 285
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 83.5 bits (205), Expect = 6e-17
Identities = 55/348 (15%), Positives = 117/348 (33%), Gaps = 28/348 (8%)
Query: 266 GPITISRLLTSSKSLKVL----CALNCPVLEEENNISAVKSKGKLLLALFTDIFKALASL 321
G + RLL ++ + + L + + V L
Sbjct: 134 GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE 193
Query: 322 FAETTKNEKNVFLD---------WRNSKNKDKNLNEIMTWLEWILSHILLRTAESNPQGL 372
E K + S + + ++ + + I + AE +
Sbjct: 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS 253
Query: 373 DDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRL 432
D ++ LL +L ++ + A V N+ S G E + + +R+
Sbjct: 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY-ELLFQPEVVRI 312
Query: 433 LLDLAKSW-REGLQSEAAKAIANLSVNAK-----VAKAVAEEGGINILAVLARSMNRLVA 486
+ L K + +A AI NL + A+ +E ++ +A L + + V
Sbjct: 313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVV 372
Query: 487 EEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-----WSSGGDGVLERAAGALANLA 541
+ A+G L NL+V +K I + LV + + + + + +
Sbjct: 373 KAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431
Query: 542 ADD-KCSMEVALAGGVHALVMLARSCKF-EGVQEQAARALANLAAHGD 587
A++ + + ++ G+ LV++ +S E AA L + + +
Sbjct: 432 AENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 75.0 bits (183), Expect = 3e-14
Identities = 45/284 (15%), Positives = 83/284 (29%), Gaps = 56/284 (19%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-E 442
L+ L+ +++V A L D++ A+ G+ L+ L + R
Sbjct: 95 LVGLLDHPKKEVHLGACGALKNISFGRDQDN------KIAIKNCDGVPALVRLLRKARDM 148
Query: 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL-----------------ARSMNRLV 485
L + NLS + + + + + + V
Sbjct: 149 DLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208
Query: 486 AEEAAGGLWNLSVGEEHKG--AIADAGGVKALVDLI---FKWSSGGDGVLERAAGALANL 540
AG L N+S G V AL+ ++ ++E L NL
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268
Query: 541 AA--------------------------DDKCSMEVALAGGVHALVMLARSCKFEGVQEQ 574
+ + + V + L + K + E
Sbjct: 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328
Query: 575 AARALANLAAHGDSNSN-NSAVGQEAGALEALVQLTRSPHEGVR 617
+A A+ NL A + + ++ AL A+ L + HE V
Sbjct: 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVV 372
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 2e-11
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 9/138 (6%)
Query: 479 RSMNRLVAEEAAGGLWNLS--VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536
+ +A+ G L +L + ++ ++ D V AA
Sbjct: 15 QYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAML---GFRLDAVKSNAAAY 71
Query: 537 LANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595
L +L + +V G+ LV L + V A AL N++ + +N
Sbjct: 72 LQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFG--RDQDNKIA 128
Query: 596 GQEAGALEALVQLTRSPH 613
+ + ALV+L R
Sbjct: 129 IKNCDGVPALVRLLRKAR 146
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 4e-05
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 12/175 (6%)
Query: 347 NEIMTWLEWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATF 406
I+ + ++ ++ + L+ + E V + A+ L
Sbjct: 323 PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNL 382
Query: 407 VVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN-----LSVNAKV 461
V I + ++ L ++ + +I N ++ N +
Sbjct: 383 AVDARNKELIGKHAIPNL-----VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437
Query: 462 AKAVAEEGGINILAVLARSMNRL--VAEEAAGGLWNLSVGEEHKGAIADAGGVKA 514
AK + E GI L ++ +S NR AA L + +E + + G K+
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKS 492
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 45.3 bits (106), Expect = 5e-05
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 6/90 (6%)
Query: 530 LERAAGALANL--AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587
+ G+LA+L + ++ + + V+ AA L +L
Sbjct: 22 AQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYR-- 78
Query: 588 SNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
N ++ + LV L P + V
Sbjct: 79 -NDKVKTDVRKLKGIPVLVGLLDHPKKEVH 107
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 5e-22
Identities = 48/302 (15%), Positives = 93/302 (30%), Gaps = 55/302 (18%)
Query: 42 SLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLAS 100
S P++ + + S + +DR S+S C++W + W + C A++
Sbjct: 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI----ERWCRRKVFIGNCYAVSPATVIR 63
Query: 101 R---------------------------------------CMNLQKLRFRGAESADSIIH 121
R L+++R + D +
Sbjct: 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123
Query: 122 LQAR---NLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178
L A+ N + L C + L+ I A L+ L L + ++ +
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 179 PKLKKLRLSGIR-DICGDAINALAKLCPNLTDIGFLDCLNVDEVA--LGNVLSVRFLSVA 235
L L +S + ++ A+ L CPNL + + ++++A L + L
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243
Query: 236 G----TSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291
G + +S +L L D P + + + L L V
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
Query: 292 EE 293
Sbjct: 303 SY 304
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 7e-17
Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 29/232 (12%)
Query: 82 SLDLRAHKCDIAMAA--SLASRCMNLQKLRFRGAESADSIIHL--QARNLRELS------ 131
+L+L + L +C LQ+L + L ++LREL
Sbjct: 293 TLNLS--YATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350
Query: 132 --GDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI 189
+ +T+ L + LES+ C ++T+ A+ IA P + + RL I
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYF---CRQMTNAALITIARNRPNMTRFRLCII 407
Query: 190 RDICGD---------AINALAKLCPNLTDIGFLDCLNVDEV-ALGNVL-SVRFLSVAGTS 238
D A+ + C +L + L +G + LSVA
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG 467
Query: 239 NMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290
+ G+ V L L++ G + + ++++ L +C V
Sbjct: 468 DSDLGMHH-VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 2e-16
Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 24/261 (9%)
Query: 47 TVIQLMSCLNYRDRASLSSTCR----TWRALGASPCLW-SSLDLRAHKCDI--AMAASLA 99
++L ++ D + W +S W + L+ + +A
Sbjct: 69 RSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR--MVVTDDCLELIA 126
Query: 100 SRCMNLQKLRFRGAE--SADSIIHLQA--RNLREL--SGDYCRKITDATLSVIVARHEAL 153
N + L E S D + + A RNL+EL ++ LS + +L
Sbjct: 127 KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186
Query: 154 ESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFL 213
SL + ++ A++ + CP LK L+L+ + + + L + P L ++G
Sbjct: 187 VSLNIS-CLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTG 243
Query: 214 DCLNVDEVALGNVLSV------RFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP 267
+ + LSV ++G + + V+ +L L++S V
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303
Query: 268 ITISRLLTSSKSLKVLCALNC 288
+ +LL L+ L L+
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDY 324
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 41/238 (17%), Positives = 76/238 (31%), Gaps = 31/238 (13%)
Query: 82 SLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESA----------DSIIHLQA--RNLRE 129
L + + D + LAS C +L++LR +E ++ + L
Sbjct: 318 RLWVLDYIEDAGLEV-LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376
Query: 130 LSGDYCRKITDATLSVIVARHEALESLQL-------GPDFCERITSDAVKAIALCCPKLK 182
+ +CR++T+A L I + +L AI C L+
Sbjct: 377 VLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435
Query: 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSV----RFLSVAGTS 238
+L LSG+ + + + + + ++ + +VLS R L +
Sbjct: 436 RLSLSGL--LTDKVFEYIGTYAKKMEMLS-VAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492
Query: 239 NMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC--ALNCPVLEEE 294
+++ KL + L +S V L L V P E
Sbjct: 493 FGDKALLANA-SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPE 549
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-13
Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 9/161 (5%)
Query: 51 LMSCLNYRDRA--SLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKL 108
L C + A +++ + D + ++ C +L++L
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437
Query: 109 RFRGAESADSIIHL--QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERI 166
G + ++ A+ + LS + +D + +++ ++L L++ C
Sbjct: 438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEI--RDC-PF 493
Query: 167 TSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNL 207
A+ A A ++ L +S + A L + P L
Sbjct: 494 GDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKL 533
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 1e-20
Identities = 41/287 (14%), Positives = 91/287 (31%), Gaps = 41/287 (14%)
Query: 32 SEKNEVVDWTSLPDDTVIQLMSCL-NYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKC 90
K + + DD + Q+M+ + + +DR S S CR W + + + + C
Sbjct: 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE--TREHVTMAL--C 60
Query: 91 DIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARH 150
A L+ R NL+ L+ +G A L + ++ I
Sbjct: 61 YTATPDRLSRRFPNLRSLKLKGKPRAAMF---------NLIPENWGGYVTPWVTEISNNL 111
Query: 151 EALESLQLGPDFCERITSDAVKAIAL-CCPKLKKLRLSGIRDICGDAINALAKLCPNLTD 209
L+S+ ++ + +A L+ L+L D + ++ C +
Sbjct: 112 RQLKSVHFR---RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKT 168
Query: 210 IGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPIT 269
+ + ++ ++L L L+ T+ I+
Sbjct: 169 LLMEESSFSEK-------DGKWLHELAQH-------------NTSLEVLNFYMTEFAKIS 208
Query: 270 ---ISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLLLALFTD 313
+ + + +SL + + +LE A + + +
Sbjct: 209 PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 5e-16
Identities = 41/288 (14%), Positives = 87/288 (30%), Gaps = 41/288 (14%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSL-----------DLRAH 88
+L + L + ++ R LG S + + L
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301
Query: 89 KCDI--AMAASLASRCMNLQKLRFRGAESADSIIHL--QARNLRELSGDYCRK------- 137
+ +L +C NL+ L R + L + L+ L +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361
Query: 138 ---ITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG 194
++ L + + LE + + + IT++++++I L RL +
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAV---YVSDITNESLESIGTYLKNLCDFRLVLLDREER 418
Query: 195 -------DAINALAKLCPNLTDIGFL-DCLNVDEVALGNVLS----VRFLSVAGTSNMKW 242
+ + +L C L F + ++ L + VR++ +
Sbjct: 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478
Query: 243 GVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290
G++ P L L++ I+ +T SL+ L
Sbjct: 479 GLME-FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 6e-15
Identities = 44/253 (17%), Positives = 92/253 (36%), Gaps = 30/253 (11%)
Query: 82 SLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESAD------------SIIHL--QARNL 127
L+ R D + LA C L++LR +I L + L
Sbjct: 322 VLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380
Query: 128 RELSGDYCRKITDATLSVIVARHEALESLQL-GPDFCERITS----DAVKAIALCCPKLK 182
++ Y IT+ +L I + L +L D ERIT + V+++ + C KL+
Sbjct: 381 EYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439
Query: 183 KLRLSGI-RDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSV----RFLSVAGT 237
+ + ++ + + PN+ + L + + L + L + G
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498
Query: 238 SNMKWGVVSQVWHKLPKLVGLDVSRTDV--GPITISRLLTSSKSLKVLCALNCPVLEEEN 295
+ + + V KLP L L V + ++ +++++ + P + ++
Sbjct: 499 CFSERAIAAAV-TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQG 557
Query: 296 NISAVKSKGKLLL 308
I ++ +L
Sbjct: 558 EIREMEHPAHILA 570
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 5e-12
Identities = 31/261 (11%), Positives = 73/261 (27%), Gaps = 36/261 (13%)
Query: 49 IQLMSCLNYRDRA--SLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQ 106
+ + +++ CR+ ++ L NL+
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL------------VGFFKAAANLE 246
Query: 107 KLRFRG--AESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCE 164
+ + ++ R+L + + ++ + L L +
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL--YAL 304
Query: 165 RITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALG 224
T D I CP L+ L + I + LA+ C L + + +
Sbjct: 305 LETEDHCTLIQ-KCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361
Query: 225 NVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR---TDVGPITISRLLTSSKSLK 281
L +S G + + +L + V T+ +I L + +
Sbjct: 362 EGL----VSQRG--------LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409
Query: 282 VLCALNCPVLEEENNISAVKS 302
++ + + + V+S
Sbjct: 410 LVLLDREERITDLPLDNGVRS 430
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 31/222 (13%), Positives = 61/222 (27%), Gaps = 43/222 (19%)
Query: 47 TVIQLMSCLNYRDRASLSS--TCRTWRALGAS-PCLWSSLDLRAHKCDIAMAASLASRCM 103
+++ + + + R AL L + + S+ +
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLK 403
Query: 104 NLQKLRFRGAESADSIIHL-----------QARNLRELS-GDYCRKITDATLSVIVARHE 151
NL R + + I L + LR + +TD LS I
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463
Query: 152 ALESLQLGPDFCE------------------------RITSDAVKAIALCCPKLKKLRLS 187
+ + LG + + A+ A P L+ L +
Sbjct: 464 NVRWMLLG--YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521
Query: 188 GIR-DICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLS 228
G R + G + +A+ N+ I V++ +
Sbjct: 522 GYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREME 563
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 96 ASLASRCMNLQKLRFRG-AESADSIIHLQA--RNLRELSGDYCR-KITDATLSVIVARHE 151
+ C NLQKL RG S +I +LR L R +T L + +
Sbjct: 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540
Query: 152 ALESLQLGPDFCERITSDAVKAIALCCPKLKKLR-LSGIRD 191
+E + + + L+G R
Sbjct: 541 NIELIPSR--RVPEVNQQGEIREMEHPAHILAYYSLAGQRT 579
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 2e-19
Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 22/193 (11%)
Query: 442 EGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG- 499
S AA I + ++ K V + GI L L + N V G L NL
Sbjct: 24 PSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHAL 559
++K +A+ GV L+ ++ + ++ G L NL+++DK + + L
Sbjct: 84 NDNKLEVAELNGVPRLLQVLK--QTRDLETKKQITGLLWNLSSNDKLKNLMI-TEALLTL 140
Query: 560 VML---------------ARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEA 604
A + L N+++ G A+ + G +++
Sbjct: 141 TENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRK--AMRRCDGLIDS 198
Query: 605 LVQLTRSPHEGVR 617
LV R +
Sbjct: 199 LVHYVRGTIADYQ 211
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 5e-17
Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 32/226 (14%)
Query: 384 LLSLMQS--TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR 441
+S++++ AAT + E + V + GI LL L K
Sbjct: 13 AVSMLEADHMLPSRISAAATFIQHECFQKSEAR-------KRVNQLRGILKLLQLLKVQN 65
Query: 442 EGLQSEAAKAIANLSV-NAKVAKAVAEEGGI-NILAVLARSMNRLVAEEAAGGLWNLSVG 499
E +Q A+ NL + VAE G+ +L VL ++ + ++ G LWNLS
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGD-------------GVLERAAGALANLAA--DD 544
++ K + + L + I SG + G L N+++ D
Sbjct: 126 DKLKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184
Query: 545 KCSMEVALAGGVHALVMLARSCKFEG-----VQEQAARALANLAAH 585
G + +LV R + E L NL+
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-14
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 480 SMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538
M AA + + + E + + G+ L+ L+ + V GAL
Sbjct: 21 HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL---KVQNEDVQRAVCGALR 77
Query: 539 NLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597
NL D+ +EVA GV L+ + + + ++Q L NL+++ + + +
Sbjct: 78 NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN---DKLKNLMI- 133
Query: 598 EAGALEALVQLTRSPHEG 615
AL L + P G
Sbjct: 134 -TEALLTLTENIIIPFSG 150
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 5e-12
Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 28/181 (15%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWR 441
LL L++ EDVQ L V +++N V + G+ LL L ++
Sbjct: 56 KLLQLLKVQNEDVQRAVCGALRNLVFEDNDN-------KLEVAELNGVPRLLQVLKQTRD 108
Query: 442 EGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVL---------------ARSMNRLVA 486
+ + + NLS N K+ + E + + + ++ +
Sbjct: 109 LETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168
Query: 487 EEAAGGLWNLS-VGEEHKGAIADAGG-VKALVDLIFKWSSGGDG---VLERAAGALANLA 541
G L N+S G + + A+ G + +LV + + E L NL+
Sbjct: 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228
Query: 542 A 542
Sbjct: 229 Y 229
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 5e-19
Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 18/246 (7%)
Query: 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD 435
+++G LL + E + A LA + + S R+ V IR LL+
Sbjct: 533 VQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDV-----IRPLLN 587
Query: 436 LAKSWREGLQS-EAAKAIANL-SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL 493
L + L++ E+ A+ NL S+N V + + +E G++ + + + AA L
Sbjct: 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647
Query: 494 WNLSVGEEHKGAIADAGG-VKALVDLIFKWSSGGDGVLERAAGALANLAADDK--CSMEV 550
NL + E+ VK L L + AGALA + + C +
Sbjct: 648 CNLVMSEDVIKMFEGNNDRVKFLALLC---EDEDEETATACAGALAIITSVSVKCCEKIL 704
Query: 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTR 610
A+A + L L + VQ + + N+ G+ + E +E L L +
Sbjct: 705 AIASWLDILHTLIANPS-PAVQHRGIVIILNMINAGEEIAKKLF---ETDIMELLSGLGQ 760
Query: 611 SPHEGV 616
P +
Sbjct: 761 LPDDTR 766
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 1e-18
Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 10/248 (4%)
Query: 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVIND------ENASIDCGRAEAVMKDGGI 430
L ++L + ++ LA F + ++ R + +G
Sbjct: 438 LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497
Query: 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAA 490
L LAK+ Q A+ + + ++ V +EGG+ L +A A
Sbjct: 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557
Query: 491 GGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL-ERAAGALANLAADDKCSME 549
L + + + + + + + L+ + + AL NLA+ ++ +
Sbjct: 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617
Query: 550 VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT 609
+ + + + AA+ L NL D ++ L L
Sbjct: 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED---VIKMFEGNNDRVKFLALLC 674
Query: 610 RSPHEGVR 617
E
Sbjct: 675 EDEDEETA 682
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 84.5 bits (208), Expect = 3e-17
Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 20/241 (8%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442
L +L ++ + QE A L V E V+++GG++ LL +A E
Sbjct: 499 ALCALAKTESHNSQELIARVLN-AVCGLKELRGK-------VVQEGGVKALLRMALEGTE 550
Query: 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGIN----ILAVLARSMNRLVAEEAAGGLWNL-S 497
+ A +A+A + + + + + ++ +L +L + L E+ L NL S
Sbjct: 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610
Query: 498 VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGG-V 556
+ E + I GV + + + AA L NL + V
Sbjct: 611 MNESVRQRIIKEQGVSKIEYYLM---EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRV 667
Query: 557 HALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616
L +L E A ALA + + S + A L+ L L +P V
Sbjct: 668 KFLALLCEDED-EETATACAGALAIITSV--SVKCCEKILAIASWLDILHTLIANPSPAV 724
Query: 617 R 617
+
Sbjct: 725 Q 725
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 79.1 bits (194), Expect = 2e-15
Identities = 48/270 (17%), Positives = 85/270 (31%), Gaps = 51/270 (18%)
Query: 385 LSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGG-IRLLLDLAKSWREG 443
+ +D++ AA GLA ++D E +++D I L+DLA+ +
Sbjct: 385 FLIKPGKDKDIRRWAADGLA--------YLTLDAECKEKLIEDKASIHALMDLARGGNQS 436
Query: 444 LQSEAAKAIANLSV---------------------------------NAKVAKAVAEEGG 470
NL K +A EG
Sbjct: 437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496
Query: 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530
L LA++ + E A L + +E +G + GGVKAL+ + G +
Sbjct: 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRM---ALEGTEKGK 553
Query: 531 ERAAGALANLAADDKCSMEVALAGGVHA---LVMLARSCKFEGVQEQAARALANLAAHGD 587
A ALA + + + + L+ L + ++ AL NLA+
Sbjct: 554 RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-- 611
Query: 588 SNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
N + + + + H +
Sbjct: 612 -NESVRQRIIKEQGVSKIEYYLMEDHLYLT 640
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-10
Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 10/183 (5%)
Query: 361 LLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGR 420
L A N +QG + + + AA L V+ D
Sbjct: 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-------VI 657
Query: 421 AEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKA--VAEEGGINILAVLA 478
+ ++ L L + E + A A+A ++ + +A ++IL L
Sbjct: 658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717
Query: 479 RSMNRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537
+ + V + N+ + GEE + + ++ L L E A L
Sbjct: 718 ANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777
Query: 538 ANL 540
A
Sbjct: 778 AAA 780
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 5e-18
Identities = 44/230 (19%), Positives = 72/230 (31%), Gaps = 19/230 (8%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWR 441
Q+ + +E A LA N +NA + G+ LL+ ++
Sbjct: 44 TAGEAEQAADQQEREGALELLADLCE-NMDNA-------ADFCQLSGMHLLVGRYLEAGA 95
Query: 442 EGLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVG 499
GL+ AA+ I A + + V G + L L V +A + L
Sbjct: 96 AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155
Query: 500 -EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVH 557
E G L+ + + ++A L NL + G V
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAM---QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212
Query: 558 ALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQ 607
LV L R+ + E AL +L + LE L++
Sbjct: 213 QLVALVRT-EHSPFHEHVLGALCSLVTDFPQGV--RECREPELGLEELLR 259
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 2e-16
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 13/196 (6%)
Query: 383 LLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWR 441
L+ +++ ++ RAA + T E V+ G +R LL L +
Sbjct: 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ-------EQVLGLGALRKLLRLLDRDAC 138
Query: 442 EGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG- 499
+ ++ +A AI+ L G ++L + + + ++A L NL VG
Sbjct: 139 DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198
Query: 500 EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHAL 559
EHKG + G V+ LV L+ + E GAL +L D + +
Sbjct: 199 PEHKGTLCSMGMVQQLVALV---RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 255
Query: 560 VMLARSCKFEGVQEQA 575
+L C+ E+
Sbjct: 256 ELLRHRCQLLQQHEEY 271
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 3e-15
Identities = 29/198 (14%), Positives = 70/198 (35%), Gaps = 9/198 (4%)
Query: 423 AVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGIN-ILAVLARSM 481
V+ + ++ + + A + +A+L N A + G++ ++ +
Sbjct: 35 RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94
Query: 482 NRLVAEEAAGGLWNL-SVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540
+ AA + + + G ++ L+ L+ D V +A A++ L
Sbjct: 95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL--DRDACDTVRVKALFAISCL 152
Query: 541 AADDKCSME-VALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599
+ + + G L+ + + ++ ++A L NL + +
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQK-LKVKSAFLLQNLLVG---HPEHKGTLCSM 208
Query: 600 GALEALVQLTRSPHEGVR 617
G ++ LV L R+ H
Sbjct: 209 GMVQQLVALVRTEHSPFH 226
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 6/159 (3%)
Query: 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI 519
K V + ++ ++ E A L +L ++ G+ LV
Sbjct: 31 KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 90
Query: 520 FKWSSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARA 578
+G G+ RAA + + + +V G + L+ L + V+ +A A
Sbjct: 91 --LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFA 148
Query: 579 LANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
++ L L++ + + ++
Sbjct: 149 ISCLVRE---QEAGLLQFLRLDGFSVLMRAMQQQVQKLK 184
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 11/136 (8%)
Query: 355 WILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENA 414
+ +S + GL F G +L+ MQ + ++ ++A L +V + E+
Sbjct: 147 FAISCL----VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202
Query: 415 SIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINIL 474
+ G ++ L+ L ++ A+ +L + E + +
Sbjct: 203 -------GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 255
Query: 475 AVLARSMNRLVAEEAA 490
+L L E
Sbjct: 256 ELLRHRCQLLQQHEEY 271
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-12
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 33 EKNEVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84
E V W SLPD+ ++ + SCL + +S C+ W L + LW +LD
Sbjct: 2 ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-09
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 97 SLASRCMNLQKLRFRGAESADSIIHLQA--RNLRELSGDYCRKITDATLSVIVARHEALE 154
+ +Q + + + + ++ C I D L + +
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 155 SLQ-LGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDI--CGDAINALAKLCPNL 207
S+ + C +T + A+ LK L LS + + + A P+L
Sbjct: 115 SMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 9e-09
Identities = 70/488 (14%), Positives = 149/488 (30%), Gaps = 150/488 (30%)
Query: 53 SCLNYRDRASLSSTCRTWRALGASPC--LWSSLDLRAHKCDIAMAASLASRCMNLQKLRF 110
+ + C +++ W L+L+ + L +
Sbjct: 164 TWV-------ALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 111 RGAESADSIIH----LQARNLREL--SGDY----------------------CR------ 136
++ + +I +QA LR L S Y C+
Sbjct: 215 SRSDHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 137 --KITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG 194
++TD LS H +L+ + +T D VK++ L + L R++
Sbjct: 274 FKQVTDF-LSAATTTHISLDHHSMT------LTPDEVKSLLLKYLDCRPQDLP--REVLT 324
Query: 195 D---AINALAKLCPNLTD-IGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWH 250
++ +A+ + +N D+ L ++ L+V + + +++
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIES-SLNVLEPAEYR-----KMFD 376
Query: 251 KL---PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNISAVKSKGKLL 307
+L P I +L + V++ + + K L
Sbjct: 377 RLSVFPP---------SA-HIPT----------ILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 308 LALFTDIFK-ALASLFAETTKNEKNV------FLDWRNSKNKDKNLNEIMTWLE-WILSH 359
+ ++ S++ E +N +D N + + I +L+ + SH
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 360 IL--LRTAESN------PQGLDDF-WLKQ----------GAGLLLSLMQ---------ST 391
I L+ E DF +L+Q +G +L+ +Q
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 392 QEDVQERAATGLATFV------VINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQ 445
+ ER + F+ +I + + +R+ L +A+ E +
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDL-------------LRIAL-MAED--EAIF 580
Query: 446 SEAAKAIA 453
EA K +
Sbjct: 581 EEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 5e-07
Identities = 64/523 (12%), Positives = 140/523 (26%), Gaps = 141/523 (26%)
Query: 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDF 162
+ +++ D + + + C+ + D S++ E ++ + + D
Sbjct: 11 TGEHQYQYK-----DILSVFEDAFVDNFD---CKDVQDMPKSIL--SKEEIDHIIMSKDA 60
Query: 163 CERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFL-DCLNVDEV 221
LRL + + K F+ + L ++
Sbjct: 61 VSGT-----------------LRLFWT--LLSKQEEMVQK---------FVEEVLRINYK 92
Query: 222 ALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281
L + + + + M ++++ +VSR +L + L+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR----LQPYLKLRQALLELR 148
Query: 282 VLCALNCPVLEEENNIS--AVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNS 339
N+ V GK +AL S + K + +F W N
Sbjct: 149 P-----------AKNVLIDGVLGSGKTWVAL-----DVCLS-YKVQCKMDFKIF--WLNL 189
Query: 340 KNKDKNLNEIMTWLEWILSHI------LLRTAESNPQGLDD--------FWLKQGAGLLL 385
KN + ++ L+ +L I + + + K LL
Sbjct: 190 KNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 386 SLMQSTQEDVQERAATGLATF-----VVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW 440
L +VQ A F +++ + + + + LD
Sbjct: 249 VL-----LNVQNAKA--WNAFNLSCKILLTTRFKQV----TDFLSAATTTHISLD---HH 294
Query: 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL-----WN 495
L + K++ ++ + E N + S+ +AE GL W
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SI---IAESIRDGLATWDNWK 348
Query: 496 LSVGEEHKGAIADAGGVKAL---------VDL-IFK-------------WSSGGDGVLER 532
++ I + + L L +F W +
Sbjct: 349 HVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 533 AAGALAN--LAADDKCSMEVALAGGVHALVMLARSCKFEGVQE 573
L L +++ ++ + + K E
Sbjct: 407 VVNKLHKYSLVEKQPKESTISI----PSIYLELK-VKLENEYA 444
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 59/374 (15%), Positives = 103/374 (27%), Gaps = 98/374 (26%)
Query: 24 EVED---EVIGSEKNEVVDWTSLPDDT--VIQLMSCLNYRDRASLSSTCRTWRALGAS-- 76
+V+D ++ E E+ D ++L L + + + +
Sbjct: 37 DVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTL----LSKQEEMVQ--KFVEEVLR 88
Query: 77 ---PCLWSSL--DLRAHKCDIAMAASLASRCMN-LQKLRFRGAESADSIIHLQARNLREL 130
L S + + R M R N Q + L+ + L EL
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLEL 147
Query: 131 -SGDY--------CRKITDATLSVIVARHEAL--ESLQLGPDF---------CERITSDA 170
K + + + +Q DF C +
Sbjct: 148 RPAKNVLIDGVLGSGK------TWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 171 VKAIALCC---PKLKKL--RLSGIRDICGDAINALAKLCPNLTDIGFLDCLNV-DEVALG 224
L P S I+ L +L L + +CL V V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQNA 256
Query: 225 NVLSV-----RFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279
+ + L + T+ K V + + LD S LT +
Sbjct: 257 KAWNAFNLSCKIL-L--TTRFK-QVTDFLSAATTTHISLD---------HHSMTLTPDEV 303
Query: 280 LKVLC-ALNCPV--LEEENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDW 336
+L L+C L E V + L S+ AE+ ++ + +W
Sbjct: 304 KSLLLKYLDCRPQDLPRE-----VLTTNPRRL-----------SIIAESIRDGLATWDNW 347
Query: 337 RNSKNKDKNLNEIM 350
++ N DK L I+
Sbjct: 348 KHV-NCDK-LTTII 359
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 18/183 (9%)
Query: 453 ANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGV 512
A + K + I+ L +++ ++ ++N++ + +A G V
Sbjct: 441 AKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAV 500
Query: 513 KALVDLIFKWSSGGDGVLERAAGALANLA-------ADDKCSMEVALAGGVHALVMLARS 565
K +++ + G+ + AL + K S A+ L
Sbjct: 501 KIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPV 560
Query: 566 CKFEGVQEQ---------AARALANLAAHGDSNSNNSA--VGQEAGALEALVQLTRSPHE 614
++ A AL NLA+ S+ + + L +
Sbjct: 561 DDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENV 620
Query: 615 GVR 617
++
Sbjct: 621 PLQ 623
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 32/265 (12%), Positives = 70/265 (26%), Gaps = 29/265 (10%)
Query: 377 LKQGAG-LLLSLMQS---TQEDVQERAATGLAT-FVVINDENASIDCGRAEAV------- 424
+QGA ++L + + E ++ L + N A+
Sbjct: 495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELL 554
Query: 425 -MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK------VAKAVAEEGGINILAVL 477
L + + EA A+ NL+ + V+ + + + L
Sbjct: 555 PRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614
Query: 478 ARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKAL---VDLIFKWSSGGDGVLERAA 534
N + + N+ A +++ K D +RA
Sbjct: 615 MLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAV 674
Query: 535 -GALANLAADDK--CSMEVALAGGVHALV-MLARSCKFEGVQEQAARALANLAAHGDSNS 590
AN+A + + + + A ++++ L N
Sbjct: 675 AAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG 734
Query: 591 NN---SAVGQEAGALEALVQLTRSP 612
N + + +AL +
Sbjct: 735 TNEVYPLLQENQKLKDALNMSLKRG 759
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 4e-05
Identities = 30/224 (13%), Positives = 69/224 (30%), Gaps = 27/224 (12%)
Query: 420 RAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLAR 479
+ +++ I L + + + + I N++ + +A++G + I+
Sbjct: 449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLA 508
Query: 480 SMNRLVAEEAAGGLWNL-----SVGEEHK-GAIADAGGVKALVDLIFKWSSGGDGVLER- 532
+ + G L + + L +L+ + + D L
Sbjct: 509 NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568
Query: 533 ----------AAGALANLA------ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAA 576
A AL NLA ++ C V+ + L + +Q
Sbjct: 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTL 627
Query: 577 RALANLAAHGDSNSN---NSAVGQEAGALEALVQLTRSPHEGVR 617
++N+ +H + + N Q LV+L + +
Sbjct: 628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQ 671
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHK 89
T LP D + ++S L+ D L ST W P LW LR
Sbjct: 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 26/234 (11%), Positives = 55/234 (23%), Gaps = 52/234 (22%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
L L+ + +A L ++A +RL ++
Sbjct: 28 LFRLLDDHNSLKRISSARVLQL---RGGQDA---------------VRLAIEFCSDKNYI 69
Query: 444 LQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK 503
+ A + + + K V + + + V A
Sbjct: 70 RRDIGAFILGQIKICKKCEDNVFNI----LNNMALNDKSACVRATAIESTAQR------- 118
Query: 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLA 563
K + V A A++ + + L+ L
Sbjct: 119 CKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA----------TIPLLINLL 168
Query: 564 RSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+ V+ AA A+ + V++ + +E VR
Sbjct: 169 KD-PNGDVRNWAAFAININKYDNSD------------IRDCFVEMLQDKNEEVR 209
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 36/192 (18%)
Query: 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLV 485
K L L + +A+ + + + + N +
Sbjct: 21 KKLNDDELFRLLDDHNSLKRISSARVLQLR----------GGQDAVRLAIEFCSDKNYIR 70
Query: 486 AEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545
+ A L + + ++ + + + AL D V A + A +
Sbjct: 71 RDIGAFILGQIKICKKCEDNVFNILNNMALND-------KSACVRATAIESTAQRCKKNP 123
Query: 546 CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605
+ + A K V+ A A++ + + + L
Sbjct: 124 IYSPKIVE----QSQITAFD-KSTNVRRATAFAISVIN--------------DKATIPLL 164
Query: 606 VQLTRSPHEGVR 617
+ L + P+ VR
Sbjct: 165 INLLKDPNGDVR 176
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 617 | |||
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.95 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.94 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.92 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.92 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.91 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.91 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.91 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.9 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.9 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.9 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.89 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.89 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.88 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.88 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.88 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.87 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.87 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.86 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.86 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.86 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.86 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.85 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.85 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.84 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.83 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.81 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.8 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.8 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.8 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.78 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.78 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.77 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.77 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.76 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.76 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.75 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.75 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.74 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.73 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.72 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.72 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.68 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.68 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.56 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.53 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.52 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.5 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.39 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.37 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.34 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.33 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.32 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.26 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.17 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.15 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.11 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.09 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.09 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.07 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.05 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.04 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.03 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.03 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.03 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.02 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.99 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 98.99 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 98.98 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.97 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.97 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.97 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 98.93 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.93 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.92 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.91 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 98.91 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 98.9 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.87 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.87 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 98.86 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 98.86 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 98.86 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 98.86 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.86 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 98.85 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 98.85 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.84 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 98.83 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 98.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 98.81 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 98.81 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.8 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 98.8 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 98.79 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 98.78 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 98.76 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 98.76 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 98.75 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 98.75 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 98.75 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 98.75 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 98.74 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.74 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 98.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.74 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 98.74 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 98.73 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 98.73 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.73 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 98.72 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 98.72 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.71 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 98.71 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 98.7 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.7 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.7 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.7 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.69 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 98.69 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 98.68 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.67 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 98.67 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 98.66 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.66 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 98.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.63 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 98.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.62 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 98.61 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.61 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.6 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.59 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 98.59 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 98.59 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 98.59 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 98.58 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.57 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 98.57 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 98.57 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 98.55 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 98.52 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.52 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 98.51 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.46 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 98.42 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 98.41 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.38 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 98.37 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.36 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.36 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 98.36 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.35 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.34 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.31 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 98.3 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 98.29 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.29 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.29 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 98.27 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.24 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.23 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.2 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.18 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.18 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.17 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.16 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.16 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.16 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.15 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.14 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.13 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.13 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.11 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.11 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 98.1 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.08 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.03 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.02 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.02 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 98.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 98.0 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.95 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.93 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.91 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 97.9 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.85 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 97.83 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.83 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 97.82 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.8 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.76 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.75 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.74 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.73 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 97.73 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 97.72 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.67 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.61 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.57 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.52 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.52 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.51 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.49 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.46 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.44 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.36 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.36 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.35 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.32 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.31 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.29 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.28 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.27 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.15 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.14 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.12 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.09 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.08 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 97.07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.06 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.03 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.03 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 97.0 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 96.97 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 96.87 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 96.84 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.76 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 96.65 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.58 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.44 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 96.37 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 96.28 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 96.21 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 95.98 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.95 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.84 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 95.71 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 95.44 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.33 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 94.69 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 93.87 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 93.54 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 93.35 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 93.25 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 93.17 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 93.0 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 92.68 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 92.33 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 91.79 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 91.78 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 91.1 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 90.92 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 90.78 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 90.3 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 89.77 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 89.74 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 89.4 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 89.18 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 88.49 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 87.87 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 86.97 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 86.73 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 86.31 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 86.28 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 85.83 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 85.39 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 85.09 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 83.38 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 81.27 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 80.48 |
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=235.48 Aligned_cols=252 Identities=23% Similarity=0.379 Sum_probs=201.9
Q ss_pred CCCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCC
Q 007131 36 EVVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAES 115 (617)
Q Consensus 36 ~~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 115 (617)
+...|++||+|++.+||+||+.+|+.+++.|||+|+.+..++.+|++++++...+.+..+..+.. ++++.|+++++..
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~l 82 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFM 82 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhh--ccceEEEcCCccc
Confidence 34579999999999999999999999999999999999988999999999998888766555432 5788898887644
Q ss_pred ccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcH
Q 007131 116 ADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG 194 (617)
Q Consensus 116 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~ 194 (617)
..... ...+++|++|++++|. +++.++..+...|++|++|+++ +| .+++.....+.. +++|++|++++|..+++
T Consensus 83 ~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~--~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 83 DQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLE--GL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECT--TC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCH
T ss_pred cccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCc--Cc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCH
Confidence 32211 1257889999998887 7877788888888999999995 45 688777776665 88999999998877888
Q ss_pred HHHHHHHhcCCCCceEeecCCCCCCHHH----HhcCc-CCCeecccCCC-CCCHHHHHHHHhcCCCCCeEEeccCC-CCH
Q 007131 195 DAINALAKLCPNLTDIGFLDCLNVDEVA----LGNVL-SVRFLSVAGTS-NMKWGVVSQVWHKLPKLVGLDVSRTD-VGP 267 (617)
Q Consensus 195 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~----l~~~~-~L~~L~l~~~~-~i~~~~l~~l~~~~~~L~~L~l~~~~-~~~ 267 (617)
.++..+...+++|++|++++|..+++.+ +..++ +|++|++++|. .+++..+......+++|++|++++|. +++
T Consensus 158 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 158 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 7788777788999999999886677643 46788 99999998886 68888888888889999999999987 666
Q ss_pred HHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 268 ITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 268 ~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
..+. .+..+++|++|++++|..+.+.+
T Consensus 238 ~~~~-~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 238 DCFQ-EFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp GGGG-GGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHH-HHhCCCCCCEeeCCCCCCCCHHH
Confidence 6654 34568899999999887666664
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=229.50 Aligned_cols=230 Identities=23% Similarity=0.266 Sum_probs=193.8
Q ss_pred HHHhcCh-HHHHHhhcc-----------CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcCC
Q 007131 375 FWLKQGA-GLLLSLMQS-----------TQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSWR 441 (617)
Q Consensus 375 ~~~~~~i-~~l~~~l~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~~ 441 (617)
.+.+.|. +.|+.+|.+ .++.+|.+|+++|.||+..++.++ ..+. ..|++|.|+++|++++
T Consensus 68 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k-------~~i~~~~GaIp~LV~LL~s~~ 140 (354)
T 3nmw_A 68 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK-------ATLCSMKGCMRALVAQLKSES 140 (354)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH-------HHHHHCHHHHHHHHHGGGCSC
T ss_pred HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH-------HHHHHcCCcHHHHHHHHCCCC
Confidence 3456666 999999953 246789999999999987765442 4454 4566999999999999
Q ss_pred HHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcC-CcchHHHHH-hcCChHHHH
Q 007131 442 EGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSV-GEEHKGAIA-DAGGVKALV 516 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~-~~g~i~~L~ 516 (617)
+++++.|+++|+||+.. +++|..+++.|+|+.|+++| ++.++++++.|+.+|+||+. +++++..++ ..|+++.|+
T Consensus 141 ~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv 220 (354)
T 3nmw_A 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 220 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHH
Confidence 99999999999999984 67899999999999999985 55788999999999999998 668898888 699999999
Q ss_pred HHHhhcCCC--CHHHHHHHHHHHHHhcc----CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCC
Q 007131 517 DLIFKWSSG--GDGVLERAAGALANLAA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (617)
Q Consensus 517 ~ll~~~~~~--~~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (617)
++|.. .+. ..++++.|+++|+||+. +++++..+.+.|+++.|+++|++++ .++++.|+++|+||+.. +.
T Consensus 221 ~lL~~-~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~---~~ 295 (354)
T 3nmw_A 221 GTLTY-RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSAR---NP 295 (354)
T ss_dssp HHTTC-CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSS---CH
T ss_pred HHhcc-CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCC---CH
Confidence 99964 111 12699999999999996 6778999999999999999999875 89999999999999963 23
Q ss_pred CccccccccCcHHHHHHHhcCCCCCC
Q 007131 591 NNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 591 ~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.....+.+.|+++.|+++++++++.+
T Consensus 296 ~~~~~i~~~G~i~~Lv~LL~s~~~~i 321 (354)
T 3nmw_A 296 KDQEALWDMGAVSMLKNLIHSKHKMI 321 (354)
T ss_dssp HHHHHHHHTTHHHHHHTTTTCSSHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 35677789999999999999876544
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=229.05 Aligned_cols=230 Identities=23% Similarity=0.261 Sum_probs=193.6
Q ss_pred HHHhcCh-HHHHHhhcc-----------CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcCC
Q 007131 375 FWLKQGA-GLLLSLMQS-----------TQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSWR 441 (617)
Q Consensus 375 ~~~~~~i-~~l~~~l~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~~ 441 (617)
.+.+.|+ +.|+.++.. .++.++.+|+++|.||+..++.++ ..+. ..|++|.|+++|.+++
T Consensus 184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k-------~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK-------ATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH-------HHHHHCHHHHHHHHHGGGCSC
T ss_pred HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccH-------HHHHHcCCcHHHHHHHHhCCC
Confidence 3456666 999999942 346789999999999987765442 3454 4667999999999999
Q ss_pred HHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcC-CcchHHHHH-hcCChHHHH
Q 007131 442 EGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSV-GEEHKGAIA-DAGGVKALV 516 (617)
Q Consensus 442 ~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~-~~g~i~~L~ 516 (617)
+++++.|+++|+||+.. +++|..+++.|||+.|+++| ...++++++.|+.+|+||+. +++++..|+ ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999984 67899999999999999986 45788999999999999998 778999998 699999999
Q ss_pred HHHhhcCCCC--HHHHHHHHHHHHHhcc----CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCC
Q 007131 517 DLIFKWSSGG--DGVLERAAGALANLAA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS 590 (617)
Q Consensus 517 ~ll~~~~~~~--~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 590 (617)
.+|.. .+.. .+++++|+++|+||+. +++++..+.+.|+++.|+++|++++ .++++.|+++|+||+... .
T Consensus 337 ~LL~~-~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~---~ 411 (458)
T 3nmz_A 337 GTLTY-RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARN---P 411 (458)
T ss_dssp HHTTC-CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSC---H
T ss_pred HHhcC-CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCC---H
Confidence 99964 1111 2599999999999995 6778999999999999999999885 899999999999999632 3
Q ss_pred CccccccccCcHHHHHHHhcCCCCCC
Q 007131 591 NNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 591 ~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.....+.+.|+++.|+++++++++.+
T Consensus 412 ~~~~~i~~~G~I~~Lv~LL~s~~~~v 437 (458)
T 3nmz_A 412 KDQEALWDMGAVSMLKNLIHSKHKMI 437 (458)
T ss_dssp HHHHHHHHHTHHHHHHTTTTCSSHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 35677889999999999999876543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-25 Score=202.15 Aligned_cols=197 Identities=21% Similarity=0.205 Sum_probs=171.7
Q ss_pred ChHHHHHhhccCCH--HHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 380 GAGLLLSLMQSTQE--DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 380 ~i~~l~~~l~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
.++.++++|.++++ ++|..|+.+|.+|+..++.+ +..+.+.|+||.|+++|+++++++|+.|+++|+||+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~-------r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEA-------RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34899999999877 89999999999998766554 3688999999999999999999999999999999998
Q ss_pred -chhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh---c----------
Q 007131 458 -NAKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---W---------- 522 (617)
Q Consensus 458 -~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~---~---------- 522 (617)
+++++..|++.|||+.|+++|.+ .+.++++.|+++||||+..+++|..|++. ++++|++++.. +
T Consensus 82 ~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 68899999999999999999985 78999999999999999999999999984 79999887631 1
Q ss_pred CCCCHHHHHHHHHHHHHhccCC-CchHHHHHhC-CHHHHHHHHhcC-----CchhHHHHHHHHHHHHhc
Q 007131 523 SSGGDGVLERAAGALANLAADD-KCSMEVALAG-GVHALVMLARSC-----KFEGVQEQAARALANLAA 584 (617)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~-~~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~ 584 (617)
...+..++++|+++|+||+..+ ++|..|.+.+ +++.|+.+++.+ .+++.+++|+.+|+|||.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1236789999999999999755 7899999874 579999999752 246899999999999986
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=224.87 Aligned_cols=178 Identities=24% Similarity=0.279 Sum_probs=157.9
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
.++.++.+|.++++++|..|+.+|.+|+..++.. +..+.+.|++|.|+++|++++++++..|+++|.||+.+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~-------~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA-------KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH-------HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4589999999999999999999999998655443 25889999999999999999999999999999999996
Q ss_pred hhhHHHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-------cCC------
Q 007131 459 AKVAKAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK-------WSS------ 524 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~-------~~~------ 524 (617)
++++..+++.|||+.|+++|. +.++++++.|+++|+||+.++++|..+++ |++|.|+++|.. .++
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence 899999999999999999999 78999999999999999999999999999 999999999931 011
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHh-CCHHHHHHHHhc
Q 007131 525 GGDGVLERAAGALANLAADDKCSMEVALA-GGVHALVMLARS 565 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~~~~i~~~-~~~~~L~~ll~~ 565 (617)
.+..+.+.|+++|+|||.+++++..+.+. |+++.|+.++++
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35678889999999999887788888887 999999887764
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=202.64 Aligned_cols=222 Identities=36% Similarity=0.448 Sum_probs=198.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-h
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN-A 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~-~ 459 (617)
++.+++++.+++++++..|+++|.+++...+++ +..+.+.|+++.|+++|++++++++..|+++|.+++.+ +
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~-------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASA-------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 489999999999999999999999998665433 36888999999999999999999999999999999997 8
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.+..+.+.|+++.|+.+|++++++++..|+++|.||+ ..++++..+.+.|+++.|++++. +.++.++..|+++|+
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999 56789999999999999999995 577899999999999
Q ss_pred HhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 539 NLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 539 ~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
||+...+. +..+.+.|+++.|+.++.+++ +.++..|+++|.+|+...+ .....+.+.|+++.|+++++++++++
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~~~v 228 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPT---SAIKAIVDAGGVEVLQKLLTSTDSEV 228 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBH---HHHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHCCCcHHH
Confidence 99986554 578889999999999999875 8999999999999997433 25567778999999999999876654
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=209.96 Aligned_cols=200 Identities=23% Similarity=0.267 Sum_probs=176.9
Q ss_pred hcC-hHHHHHhhccCCHHHHHHHHHHHhhhccc-CCCcccCCchhHHHHHhhCCHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 007131 378 KQG-AGLLLSLMQSTQEDVQERAATGLATFVVI-NDENASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIAN 454 (617)
Q Consensus 378 ~~~-i~~l~~~l~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ 454 (617)
..| +|.|+++|.+++++++..|+++|+||+.. ++.+ +..+.+.|+++.|+++| ++.++++++.|+.+|+|
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-------k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS-------KKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHH-------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHH-------HHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 567 69999999999999999999999999864 2233 36888999999999985 55689999999999999
Q ss_pred hcc-chhhHHHHH-HhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHHHHhhcCC
Q 007131 455 LSV-NAKVAKAVA-EEGGINILAVLARSMNR----LVAEEAAGGLWNLSV----GEEHKGAIADAGGVKALVDLIFKWSS 524 (617)
Q Consensus 455 ls~-~~~~~~~i~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~----~~~~~~~i~~~g~i~~L~~ll~~~~~ 524 (617)
|+. .++++..++ ..|+++.|+++|.+.++ ++++.|+++|+||+. +++++..+.+.|+++.|+.+|. +
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~---~ 274 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---S 274 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT---C
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc---C
Confidence 999 778898998 68889999999987654 589999999999995 7789999999999999999995 5
Q ss_pred CCHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 525 GGDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
++..++++|+++|+||+. +++++..+++.|+++.|++++++++ +++++.|+++|.||+...+.
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCG
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHH
Confidence 788999999999999995 6678999999999999999999885 89999999999999985443
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-24 Score=204.41 Aligned_cols=222 Identities=30% Similarity=0.370 Sum_probs=197.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~ 460 (617)
+.++++|++++++++..|+.+|+++....+. .+..+.+.|+++.|+++|++++++++..|+++|.+++. +++
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~-------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNE-------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHH-------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCc-------hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 8899999999999999999999887655333 33678999999999999999999999999999999998 688
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH-HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHK-GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
.+..+.+.|+++.|+++|.++++++++.|+++|+||+.+++.+ ..+.+.|+++.|+++|. +++..++..|+++|+|
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSN 164 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888 88899999999999995 4688999999999999
Q ss_pred hccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 540 LAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 540 l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
|+..+ +.+..+.+.|+++.|++++.+++ +.++..|+++|.+|+...+ .....+.+.|+++.|+++++++++++|
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSS-HHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHhcCCH---HHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 99755 45777788999999999999874 8999999999999996433 255677789999999999998877653
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=215.55 Aligned_cols=228 Identities=22% Similarity=0.280 Sum_probs=188.9
Q ss_pred HHhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 376 WLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 376 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
|...+++.++++|.++++++|..|+++|.+|+...+++ +..+.+.|+||.||++|+++++++++.|+++|.||
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~-------k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV-------KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999998765554 37899999999999999999999999999999999
Q ss_pred ccc--hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh-----------
Q 007131 456 SVN--AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK----------- 521 (617)
Q Consensus 456 s~~--~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~----------- 521 (617)
+.+ +++|..|++.|||+.|+++|++ .+.++++.|+++||||+.+++++..|++ ++++.|++++..
T Consensus 118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~ 196 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNE 196 (584)
T ss_dssp TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-----
T ss_pred HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccc
Confidence 984 8999999999999999999998 6789999999999999999999999996 579999998731
Q ss_pred ----cCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCC-HHHHHHHHhcC-----CchhHHHHHHHHHHHHhccCC---
Q 007131 522 ----WSSGGDGVLERAAGALANLAADDKC-SMEVALAGG-VHALVMLARSC-----KFEGVQEQAARALANLAAHGD--- 587 (617)
Q Consensus 522 ----~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~-~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~--- 587 (617)
.+..++.++++|+++|.|||..++. |..|++.++ ++.|+.++++. .+.+.+++|+++|+|||...+
T Consensus 197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 0233579999999999999987754 899988655 57999998752 346899999999999997411
Q ss_pred -------------------CCCCccccccccCcHHHHHHHhcC
Q 007131 588 -------------------SNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 588 -------------------~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
....-.+.+++.++++.|+.+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~ 319 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence 011112334455677888888853
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=213.84 Aligned_cols=225 Identities=23% Similarity=0.264 Sum_probs=186.3
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIA 453 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~ 453 (617)
+.+.|. |.|+++|.+++++++..|+++|+||+...+++ +..+.+.|++|.|+++|. ++++++++.|+++|+
T Consensus 40 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~-------k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-------KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112 (457)
T ss_dssp HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 345555 99999999999999999999999998754444 478889999999999999 779999999999999
Q ss_pred HhccchhhHHHHHHhCCHHHHHHHHh--------c--------CCHHHHHHHHHHHHHhcCCcchHHHHHhc-CChHHHH
Q 007131 454 NLSVNAKVAKAVAEEGGINILAVLAR--------S--------MNRLVAEEAAGGLWNLSVGEEHKGAIADA-GGVKALV 516 (617)
Q Consensus 454 ~ls~~~~~~~~i~~~~~i~~L~~lL~--------~--------~~~~~~~~a~~~L~nL~~~~~~~~~i~~~-g~i~~L~ 516 (617)
||+.+++.|..+++ |+++.|+++|. + .++++++.|+++|+||+.+++++..+++. |+++.|+
T Consensus 113 nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv 191 (457)
T 1xm9_A 113 NLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLM 191 (457)
T ss_dssp HHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHH
T ss_pred HHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHH
Confidence 99999899999999 99999999993 2 24567779999999999888999999997 9999999
Q ss_pred HHHhhc------C-------------------------------------------------------------------
Q 007131 517 DLIFKW------S------------------------------------------------------------------- 523 (617)
Q Consensus 517 ~ll~~~------~------------------------------------------------------------------- 523 (617)
.+|..+ .
T Consensus 192 ~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (457)
T 1xm9_A 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271 (457)
T ss_dssp HHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCS
T ss_pred HHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcccccc
Confidence 888631 0
Q ss_pred -----------------------CCCHHHHHHHHHHHHHhccCCCc------hHHHHHhCCHHHHHHHHhcCCchhHHHH
Q 007131 524 -----------------------SGGDGVLERAAGALANLAADDKC------SMEVALAGGVHALVMLARSCKFEGVQEQ 574 (617)
Q Consensus 524 -----------------------~~~~~~~~~a~~~L~~l~~~~~~------~~~i~~~~~~~~L~~ll~~~~~~~~~~~ 574 (617)
+.++.+++.|+++|+||+..... +..+.+.|+++.|++++.+++ ++++..
T Consensus 272 ~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~-~~v~~~ 350 (457)
T 1xm9_A 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN-SDVVRS 350 (457)
T ss_dssp SCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC-HHHHHH
T ss_pred CchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC-HhHHHH
Confidence 11356777889999999976543 223346899999999999986 899999
Q ss_pred HHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 575 AARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 575 a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
|+++|.||+.+. .... ++..|+++.|+++|.+++.
T Consensus 351 A~~aL~nls~~~----~~~~-~i~~~~i~~Lv~lL~~~~~ 385 (457)
T 1xm9_A 351 GASLLSNMSRHP----LLHR-VMGNQVFPEVTRLLTSHTG 385 (457)
T ss_dssp HHHHHHHHHTSG----GGHH-HHHHHTHHHHHHTTTSCCS
T ss_pred HHHHHHHHhcCH----HHHH-HHHHhhhHHHHHhccCCCC
Confidence 999999999743 2333 3456899999999998654
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=218.79 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=74.0
Q ss_pred CCCCCCCCHHHHHHHHccCC-hHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCC
Q 007131 37 VVDWTSLPDDTVIQLMSCLN-YRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAES 115 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~-~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 115 (617)
.+.|+.||+|++.+||+||+ .+|+.+++.|||+|+++. ...|.++++....... ...+..++++|++|+++++..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~ 78 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPH 78 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh--hhhceEEeeccccccC--HHHHHhhCCCceEEeccCCCc
Confidence 36799999999999999999 999999999999999882 2334444443321110 112334445555555554421
Q ss_pred cc-----------------HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 116 AD-----------------SIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 116 ~~-----------------~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.. ......+++|++|++++|. +++..+..+...|++|++|+|. +|..+++.++..+...|
T Consensus 79 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~--~~~~~~~~~l~~~~~~~ 155 (594)
T 2p1m_B 79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLS--SCEGFSTDGLAAIAATC 155 (594)
T ss_dssp GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEE--SCEEEEHHHHHHHHHHC
T ss_pred hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCC--CcCCCCHHHHHHHHHhC
Confidence 10 0111234455555554443 4444444444444455555553 24344444444444444
Q ss_pred CCCCeeeccCc
Q 007131 179 PKLKKLRLSGI 189 (617)
Q Consensus 179 ~~L~~L~l~~~ 189 (617)
++|++|++++|
T Consensus 156 ~~L~~L~L~~~ 166 (594)
T 2p1m_B 156 RNLKELDLRES 166 (594)
T ss_dssp TTCCEEECTTC
T ss_pred CCCCEEeCcCC
Confidence 44444444443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=207.64 Aligned_cols=200 Identities=23% Similarity=0.266 Sum_probs=176.1
Q ss_pred hcC-hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHh
Q 007131 378 KQG-AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~-i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l 455 (617)
..| +|.|+.+|.+++++++..|+++|++|+...+ +..+..+.+.|+++.|+++|. +.++++++.|+.+|+||
T Consensus 241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~------~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD------VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 314 (458)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCC------HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC------HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 567 6999999999999999999999999986421 123478889999999999864 46889999999999999
Q ss_pred cc-chhhHHHHH-HhCCHHHHHHHHhcCCH----HHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHHHHhhcCCC
Q 007131 456 SV-NAKVAKAVA-EEGGINILAVLARSMNR----LVAEEAAGGLWNLSV----GEEHKGAIADAGGVKALVDLIFKWSSG 525 (617)
Q Consensus 456 s~-~~~~~~~i~-~~~~i~~L~~lL~~~~~----~~~~~a~~~L~nL~~----~~~~~~~i~~~g~i~~L~~ll~~~~~~ 525 (617)
+. .++++..|+ ..|+++.|+++|...++ ++++.|+++|+||+. +++++..+++.|+++.|+.+|. ++
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~---~~ 391 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---SH 391 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS---CS
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc---CC
Confidence 99 778899998 68899999999987654 589999999999995 7789999999999999999995 57
Q ss_pred CHHHHHHHHHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 526 GDGVLERAAGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
+..++++|+++|+||+. +++++..+++.|+++.|++++++++ +++++.|+++|.||+...+
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTCCS
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCH
Confidence 88999999999999994 6778999999999999999999875 8999999999999998543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-22 Score=183.64 Aligned_cols=193 Identities=28% Similarity=0.349 Sum_probs=174.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
.+.++.++++++++++..|+++|.+++..+++. +..+.+.|+++.|+++|.+++++++..|+++|.+++. ++
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 389999999999999999999999998655443 3688999999999999999999999999999999996 67
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.+..+.+.|+++.|+.+|.+.++.+++.|+++|+||+... +.+..+.+.|+++.|++++. +++..++..|+++|+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~aL~ 163 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALS 163 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999644 66778889999999999995 468899999999999
Q ss_pred HhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 539 NLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 539 ~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
|++.. ++.+..+.+.|+++.|++++.+++ +++++.|+++|.+|+.
T Consensus 164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 164 NIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred HHHcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 99987 566888889999999999999875 8999999999999975
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=211.79 Aligned_cols=233 Identities=20% Similarity=0.200 Sum_probs=184.4
Q ss_pred HHhcC-hHHHHHhhccCCHHHHHHHHHHHhhhccc-CCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHH
Q 007131 376 WLKQG-AGLLLSLMQSTQEDVQERAATGLATFVVI-NDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAI 452 (617)
Q Consensus 376 ~~~~~-i~~l~~~l~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L 452 (617)
+.+.| ||.|+++|.++++++|..|+++|+||+.. ++++ +..|.+.|+|+.|+++|.+ .+.++++.|+++|
T Consensus 86 V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n-------k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL 158 (584)
T 3l6x_A 86 VRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN-------KIAIKNCDGVPALVRLLRKARDMDLTEVITGTL 158 (584)
T ss_dssp HHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH-------HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH-------HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34555 49999999999999999999999999874 3444 3789999999999999998 5789999999999
Q ss_pred HHhccchhhHHHHHHhCCHHHHHHHHh------------------cCCHHHHHHHHHHHHHhcCCc-chHHHHHhc-CCh
Q 007131 453 ANLSVNAKVAKAVAEEGGINILAVLAR------------------SMNRLVAEEAAGGLWNLSVGE-EHKGAIADA-GGV 512 (617)
Q Consensus 453 ~~ls~~~~~~~~i~~~~~i~~L~~lL~------------------~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~-g~i 512 (617)
++||.++++|..|++ +|++.|++++. ..++++++.|+++|.||+... ++|..+++. |++
T Consensus 159 ~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 159 WNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp HHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred HHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 999999999999996 57999999872 135789999999999999876 569999985 556
Q ss_pred HHHHHHHhhc---CCCCHHHHHHHHHHHHHhccCC--------------------------CchHHHHHhCCHHHHHHHH
Q 007131 513 KALVDLIFKW---SSGGDGVLERAAGALANLAADD--------------------------KCSMEVALAGGVHALVMLA 563 (617)
Q Consensus 513 ~~L~~ll~~~---~~~~~~~~~~a~~~L~~l~~~~--------------------------~~~~~i~~~~~~~~L~~ll 563 (617)
+.|+.++... ...+.+.+++|+++|+||+... .+.+.+.+.++++.++.++
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL 317 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHH
Confidence 7999999741 2346689999999999999641 1122233445577889999
Q ss_pred hcCCchhHHHHHHHHHHHHhccCCCCC-CccccccccCcHHHHHHHhcCCCCCC
Q 007131 564 RSCKFEGVQEQAARALANLAAHGDSNS-NNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 564 ~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
..+..+.++++|+++|+|||....... .....+.+.|+++.|++++.++++.|
T Consensus 318 ~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v 371 (584)
T 3l6x_A 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERV 371 (584)
T ss_dssp HHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 765568999999999999997432111 11235567899999999999876543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=212.47 Aligned_cols=236 Identities=19% Similarity=0.232 Sum_probs=193.6
Q ss_pred ccCCccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHH
Q 007131 366 ESNPQGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443 (617)
Q Consensus 366 ~~~~~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 443 (617)
....++...+ .+.|+ |.|+++|. ++++++|..|+++|+|+|+..+++ ++.+++.|++|.|+++|++++++
T Consensus 87 ~e~~ppi~~i-i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~-------~~~vv~~GaIp~Lv~lL~s~~~~ 158 (510)
T 3ul1_B 87 REKQPPIDNI-IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-------TKAVVDGGAIPAFISLLASPHAH 158 (510)
T ss_dssp CSSCCCHHHH-HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHH
T ss_pred CCCCchHHHH-HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHCCCHHHHHHHHcCCCHH
Confidence 3334445554 46666 99999996 466899999999999998766554 37899999999999999999999
Q ss_pred HHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHh-------------------------------------------
Q 007131 444 LQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLAR------------------------------------------- 479 (617)
Q Consensus 444 ~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~------------------------------------------- 479 (617)
+++.|+++|+||+.+ ++.+..+.+.|+++.|+.+|.
T Consensus 159 v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~ 238 (510)
T 3ul1_B 159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 238 (510)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence 999999999999985 667888888888877776653
Q ss_pred ----cCCHHHHHHHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHh
Q 007131 480 ----SMNRLVAEEAAGGLWNLSVGEE-HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALA 553 (617)
Q Consensus 480 ----~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~ 553 (617)
+.+++++..|+++|++|+..+. ....+.+.|+++.|+.+|. +.+..++..++++|+|++..+ ..+..+++.
T Consensus 239 ~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~ 315 (510)
T 3ul1_B 239 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVIDA 315 (510)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc---CCChhhhhHHHHHHHHhhcCCHHHHHHHhhc
Confidence 3455677788999999997664 4566678999999999995 578899999999999998655 457788999
Q ss_pred CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 554 GGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 554 ~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
|+++.|+.++.+++ +.++..|+++|.||+.... .....+.+.|+++.|+.++.+++.++
T Consensus 316 g~l~~L~~LL~~~~-~~v~~~A~~aL~nl~a~~~---~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 316 GALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQ---DQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp TGGGGCC-CTTCSS-HHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHHHHcCcH---HHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 99999999999875 8999999999999987433 25667778999999999999876554
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-22 Score=208.36 Aligned_cols=226 Identities=19% Similarity=0.207 Sum_probs=190.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-c
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV-N 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~-~ 458 (617)
++.+|+.+++++++.|..|+..++.|.+. +.+..+ +.+++.|++|.||++|+.. ++++|..|+++|.||+. +
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~-e~~ppi-----~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSR-EKQPPI-----DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTC-SSCCCH-----HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CCCchH-----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999998544 344333 6899999999999999865 68999999999999987 6
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhc--CCCCHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKW--SSGGDGVLERAAG 535 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~a~~ 535 (617)
++++..+++.|+||.|+++|+++++++++.|+++|+||+.+ ++.|..+.+.|++++|+.++... ......+.+.+++
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 77899999999999999999999999999999999999976 47889999999999999999641 1123467899999
Q ss_pred HHHHhccCCCch-HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 536 ALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 536 ~L~~l~~~~~~~-~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
+++|++.+.... ......++++.|++++.+++ ++++..|+++|.+|+..++. ....+.+.|+++.|++++.+++.
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~ 288 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNE---RIEMVVKKGVVPQLVKLLGATEL 288 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHH---HHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhh---hHHHHHhcccchhhhhhhcCCCh
Confidence 999999876553 33344578999999999885 89999999999999874332 45667789999999999998765
Q ss_pred CC
Q 007131 615 GV 616 (617)
Q Consensus 615 ~v 616 (617)
.+
T Consensus 289 ~v 290 (510)
T 3ul1_B 289 PI 290 (510)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=208.63 Aligned_cols=237 Identities=19% Similarity=0.230 Sum_probs=194.3
Q ss_pred hccCCccchHHHHhcCh-HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCH
Q 007131 365 AESNPQGLDDFWLKQGA-GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWRE 442 (617)
Q Consensus 365 ~~~~~~~~~~~~~~~~i-~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 442 (617)
+....+....+ .+.|+ |.|+++|. ++++++|..|+++|.|++....++ +..+++.|++|.|+.+|.++++
T Consensus 105 s~~~~~~i~~i-i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~-------~~~vv~~Gaip~Lv~LL~s~~~ 176 (529)
T 3tpo_A 105 SREKQPPIDNI-IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ-------TKAVVDGGAIPAFISLLASPHA 176 (529)
T ss_dssp TSSSCCCHHHH-HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCH
T ss_pred cCCCCchHHHH-HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHCCCHHHHHHHHcCCCH
Confidence 33333444453 46666 99999996 567999999999999998765544 3688999999999999999999
Q ss_pred HHHHHHHHHHHHhccc-hhhHHHHHHhCCHHHHHHHHh------------------------------------------
Q 007131 443 GLQSEAAKAIANLSVN-AKVAKAVAEEGGINILAVLAR------------------------------------------ 479 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL~------------------------------------------ 479 (617)
++++.|+++|+||+.+ ++.+..+.+.|++++|+.+|.
T Consensus 177 ~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L 256 (529)
T 3tpo_A 177 HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 256 (529)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHH
Confidence 9999999999999984 678888888887777766553
Q ss_pred -----cCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHH
Q 007131 480 -----SMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVAL 552 (617)
Q Consensus 480 -----~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~ 552 (617)
+.+++++..|+++|.+++..+ +....+.+.|+++.|+.+|. +.+..++..|+.+|+|++..+ ..+..+.+
T Consensus 257 ~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 345567778889999998766 45566778999999999994 578899999999999998755 45788899
Q ss_pred hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 553 AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 553 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.|+++.|+.++.+++ +.++..|+++|.||+..... ....+.+.|+++.|+.++.+++.++
T Consensus 334 ~g~l~~L~~LL~~~~-~~i~~~a~~aL~nl~~~~~~---~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 334 AGALAVFPSLLTNPK-TNIQKEATWTMSNITAGRQD---QIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp TTGGGGHHHHTTCSS-HHHHHHHHHHHHHHHTSCHH---HHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred cccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcccHH---HHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 999999999999875 89999999999999975332 5667778999999999999876554
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-22 Score=216.01 Aligned_cols=226 Identities=21% Similarity=0.183 Sum_probs=189.2
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
+.+.|+ |.|+.++.++++++|+.|+++|.||+... + .|..+++.|++++|+.+|.++++..++.|+++|.+
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~-------~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~n 562 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCGLK-E-------LRGKVVQEGGVKALLRMALEGTEKGKRHATQALAR 562 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-H-------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-H-------HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 456676 99999999999999999999999997432 2 34789999999999999999999999999999999
Q ss_pred hccchhhHHHH---HHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHH
Q 007131 455 LSVNAKVAKAV---AEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 455 ls~~~~~~~~i---~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 529 (617)
|+.+.+....+ ...|++++|+++|..+ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|. ++++.+
T Consensus 563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~---s~~~~V 639 (810)
T 3now_A 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM---EDHLYL 639 (810)
T ss_dssp HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SCCTTH
T ss_pred HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHH
Confidence 98743322221 1246899999999865 3445678999999999874 78999999999999999996 467899
Q ss_pred HHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccc-cCcHHHHHH
Q 007131 530 LERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQE-AGALEALVQ 607 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-~g~~~~L~~ 607 (617)
++.|+++|+||+.+++.+..+++ .|.++.|+.++.+++ ..++..|+++|+||+...+. ....+++ .|+++.|++
T Consensus 640 q~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~---~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 640 TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED-EETATACAGALAIITSVSVK---CCEKILAIASWLDILHT 715 (810)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHH---HHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHH---HHHHHHHHcCCHHHHHH
Confidence 99999999999998888888885 688999999999875 89999999999999974222 3445556 899999999
Q ss_pred HhcCCCCCC
Q 007131 608 LTRSPHEGV 616 (617)
Q Consensus 608 ll~~~~~~v 616 (617)
++.+++.++
T Consensus 716 LL~s~d~~v 724 (810)
T 3now_A 716 LIANPSPAV 724 (810)
T ss_dssp HHTCSSHHH
T ss_pred HHCCCCHHH
Confidence 999887654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=210.47 Aligned_cols=255 Identities=18% Similarity=0.241 Sum_probs=161.4
Q ss_pred CCCCCHHHHHHHHccC-ChHhHHHHhhhchhHHHhhcCCC--c-------------------ccccCCCC----------
Q 007131 40 WTSLPDDTVIQLMSCL-NYRDRASLSSTCRTWRALGASPC--L-------------------WSSLDLRA---------- 87 (617)
Q Consensus 40 ~~~LP~e~l~~I~~~L-~~~~~~~~~~vck~w~~~~~~~~--~-------------------w~~l~l~~---------- 87 (617)
...||||++.+||+|| +.+|+.+++.|||+|+.+..... . .+.++++.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 3589999999999999 89999999999999998732100 0 01122211
Q ss_pred ----CCCCHHHHHHHHHhCCCceEEEecCCCCccHHHH---hcCCC-ccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 88 ----HKCDIAMAASLASRCMNLQKLRFRGAESADSIIH---LQARN-LRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 88 ----~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~-L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
.......+..+...+++|++|+|++|...+.... ..+++ |++|++++|..+++.++..+...|++|++|+|+
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~ 172 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECT
T ss_pred cccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECc
Confidence 0112233445555566666666666644433221 12333 666666666655666666666666667776664
Q ss_pred CCCCCCCCH---HHHHHHHhcCCCCCeeeccCccCC---cHHHHHHHHhcCCCCceEeecCCCCCC--------------
Q 007131 160 PDFCERITS---DAVKAIALCCPKLKKLRLSGIRDI---CGDAINALAKLCPNLTDIGFLDCLNVD-------------- 219 (617)
Q Consensus 160 ~~~~~~i~~---~~l~~l~~~~~~L~~L~l~~~~~i---~~~~l~~l~~~~~~L~~L~l~~~~~~~-------------- 219 (617)
+| .+++ ..+..+...+++|++|+++++ .+ +...+..+...+|+|++|++++|....
T Consensus 173 --~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L 248 (592)
T 3ogk_B 173 --ES-SFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248 (592)
T ss_dssp --TC-EEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEE
T ss_pred --cc-cccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhh
Confidence 24 2222 224444445566666666554 22 355666666677777777777652100
Q ss_pred ---------------------------------H----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 220 ---------------------------------E----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 220 ---------------------------------~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
. ..+..+++|++|++++|. +++..+..+...|++|++|+++
T Consensus 249 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR- 326 (592)
T ss_dssp EECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-
T ss_pred cccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-
Confidence 0 112456788888888875 7888877777888888888888
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccC----------CCCCChhHHHHHH
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALN----------CPVLEEENNISAV 300 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~----------c~~~~~~~~~~~~ 300 (617)
+.+++..+..+..++++|++|++++ |..+++.+...+.
T Consensus 327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 5577777888888888888888885 7778877655544
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=212.36 Aligned_cols=234 Identities=15% Similarity=0.118 Sum_probs=190.4
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccC----------------------Cchh---HHHHHhhCCH
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASI----------------------DCGR---AEAVMKDGGI 430 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~----------------------~~~~---~~~i~~~~~i 430 (617)
.+.|+ |.|++++++++..++..|+++|.||+...+....+ ++.. .+.+++.|++
T Consensus 418 ~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV 497 (810)
T 3now_A 418 EDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497 (810)
T ss_dssp HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence 34555 99999999999999999999999998754322000 0011 2678899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH---
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA--- 507 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~--- 507 (617)
|.|+.+|.++++.+|+.|+++|.|||.+++++..+++.|++++|+.+|.++++.+++.|+++|.||+.+.+....+.
T Consensus 498 p~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986544333221
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
..|++|+|+.+|. ++.+...+..|+++|.||+..+ +.+..+++.|+++.|+.++.+++ +.++..|+++|+||+..+
T Consensus 578 ~~~aIppLv~LL~--~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 578 SLDVIRPLLNLLQ--QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp HHHTHHHHHHTTS--TTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSH
T ss_pred hhcHHHHHHHHhC--CCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCh
Confidence 1469999999995 2334455678999999999875 66889999999999999999875 899999999999999844
Q ss_pred CCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 587 DSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 587 ~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+. ....+...|+++.|+.++++++..+
T Consensus 655 ~~---~~~~v~~~g~l~~Lv~LL~s~d~~v 681 (810)
T 3now_A 655 DV---IKMFEGNNDRVKFLALLCEDEDEET 681 (810)
T ss_dssp HH---HHHHHSSSSHHHHHHHGGGCSSHHH
T ss_pred HH---HHHHHhccCcHHHHHHHhcCCCHHH
Confidence 32 3333323799999999999876543
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-21 Score=183.30 Aligned_cols=197 Identities=30% Similarity=0.387 Sum_probs=176.2
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
.+.|+ +.+++++.+++++++..|+++|.+++...+++ +..+.+.|+++.|+++|++++++++..|+++|.++
T Consensus 51 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44555 99999999999999999999999998655443 47889999999999999999999999999999999
Q ss_pred ccchhhH-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVNAKVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~~~~~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.+++.+ ..+.+.|+++.|+++|.++++.+++.|+++|+||+..+ +.+..+.+.|+++.|+.++. +.++.++..|
T Consensus 124 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a 200 (252)
T 4db8_A 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEA 200 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG---CSSHHHHHHH
T ss_pred hcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHH
Confidence 9988888 88999999999999999999999999999999999754 67788888999999999995 4688999999
Q ss_pred HHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 534 AGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 534 ~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+++|+|++.. ++.+..+.+.|+++.|++++.+++ ++++..|+++|.||+.
T Consensus 201 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS-SHHHHTHHHHHHTTC-
T ss_pred HHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC-HHHHHHHHHHHHHHhc
Confidence 9999999964 455778889999999999999875 7999999999999974
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=201.67 Aligned_cols=228 Identities=20% Similarity=0.230 Sum_probs=187.9
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh---------------------------
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD--------------------------- 427 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~--------------------------- 427 (617)
+.+.|+ |.|+.++.+++++++..|+++|.||+..++.. +..+.+.
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~-------r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF-------RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH-------HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 456666 99999999999999999999999998665432 2333333
Q ss_pred --------------------CCHHHHHHHHhcCCHHHHHHHHHHHHHhccch-hhHHHHHHhCCHHHHHHHHhcCCHHHH
Q 007131 428 --------------------GGIRLLLDLAKSWREGLQSEAAKAIANLSVNA-KVAKAVAEEGGINILAVLARSMNRLVA 486 (617)
Q Consensus 428 --------------------~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~~~i~~L~~lL~~~~~~~~ 486 (617)
+++|.|+++|.+.+++++..|+++|.+++.+. +....+.+.|+++.|+.+|.+.++.++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 310 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 310 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHH
Confidence 44555555666667788889999999999854 456677789999999999999999999
Q ss_pred HHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHh
Q 007131 487 EEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 487 ~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~ 564 (617)
..|+.+|+|++... ..+..+.+.|+++.|+.+|. +.++.++..|+++|+|++.+.+ .+..+.+.|+++.|+.++.
T Consensus 311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~---~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~ 387 (529)
T 3tpo_A 311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT---NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 387 (529)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT---CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc
Confidence 99999999998654 67888889999999999994 5788999999999999997654 4777889999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 565 SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 565 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+++ .+++..|+++|.|++..++. .....+++.|+++.|+++|.+++.++
T Consensus 388 ~~~-~~v~~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~i 436 (529)
T 3tpo_A 388 KAD-FKTQKAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKI 436 (529)
T ss_dssp SSC-HHHHHHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred CCC-HHHHHHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHHH
Confidence 886 89999999999999975432 24456778999999999999876543
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=180.20 Aligned_cols=177 Identities=20% Similarity=0.204 Sum_probs=152.8
Q ss_pred CHHHHHHHHhcCCH--HHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHH
Q 007131 429 GIRLLLDLAKSWRE--GLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKG 504 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~--~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~ 504 (617)
.++.++++|.++++ +++..|++.|.+++. +++++..+.+.||||+|+++|+++++++++.|+++|.||+. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57999999999887 899999999999997 67899999999999999999999999999999999999997 568999
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHh---cC------------Cch
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR---SC------------KFE 569 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~---~~------------~~~ 569 (617)
.|.+.|+||.|+++|.. +.+.+++++|+++||||+..+++|..|++. +++.|++++. ++ .++
T Consensus 89 ~I~~~GaI~~Lv~lL~~--~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQ--TRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHcCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999963 467899999999999999999999999874 6899987542 22 146
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccccc-ccCcHHHHHHHhcC
Q 007131 570 GVQEQAARALANLAAHGDSNSNNSAVGQ-EAGALEALVQLTRS 611 (617)
Q Consensus 570 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~g~~~~L~~ll~~ 611 (617)
+++++|+++|+||+...+. ....++ ..|+|+.|+.+++.
T Consensus 166 ~v~~na~~~L~nLss~~~~---~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGAD---GRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHH---HHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHH---HHHHHHHCCCcHHHHHHHHHh
Confidence 8999999999999974322 344444 45789999999886
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=178.36 Aligned_cols=201 Identities=37% Similarity=0.493 Sum_probs=179.0
Q ss_pred HhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 377 LKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
.+.|+ +.+++++.+++++++..|+++|.+++...+.. +..+.+.|+++.|+++|++++++++..|+++|.++
T Consensus 41 ~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l 113 (252)
T 4hxt_A 41 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA-------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH-------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45555 99999999999999999999999998654433 47888999999999999999999999999999999
Q ss_pred c-cchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 S-VNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s-~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+ .+++.+..+.+.|+++.|+++|.+.+++++..|+++|+||+... +.+..+.+.|+++.|+.++. +.++.++..|
T Consensus 114 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a 190 (252)
T 4hxt_A 114 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEA 190 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCCHHHHHHH
Confidence 9 57889999999999999999999999999999999999999754 56688889999999999995 5788999999
Q ss_pred HHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 534 AGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 534 ~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
+++|++++.. ++.+..+.+.|+++.|++++.+++ +++++.|+++|.||+.....
T Consensus 191 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 191 ARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCCc
Confidence 9999999974 445778889999999999999875 89999999999999985544
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=174.23 Aligned_cols=186 Identities=30% Similarity=0.353 Sum_probs=162.6
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-Ccc
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEE 501 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~ 501 (617)
....+..+.|+.+|.+++++++..|+++|.+++. +++.+..+.+.|+++.|+++|+++++++++.|+++|.|++. +++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 3467889999999999999999999999999995 67889999999999999999999999999999999999995 568
Q ss_pred hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 502 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
++..+.+.|+++.|+.+|. +.++.++..|+++|+|++...+ .+..+.+.|+++.|++++.+++ .+++..|+++|.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~ 163 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALS 163 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc---CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 8899999999999999995 4688999999999999997554 4677889999999999999875 899999999999
Q ss_pred HHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+|+..++. ....+.+.|+++.|++++.++++++
T Consensus 164 ~l~~~~~~---~~~~~~~~g~i~~L~~ll~~~~~~v 196 (210)
T 4db6_A 164 NIASGGNE---QKQAVKEAGALEKLEQLQSHENEKI 196 (210)
T ss_dssp HHHTSCHH---HHHHHHHTTHHHHHHHGGGCSCHHH
T ss_pred HHHcCCcH---HHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 99985333 5667778999999999999877654
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-20 Score=195.43 Aligned_cols=226 Identities=22% Similarity=0.222 Sum_probs=194.4
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCC-CcccCCchhHHHHHhhCCHHHHHHHHhcCC-HHHHHHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVIND-ENASIDCGRAEAVMKDGGIRLLLDLAKSWR-EGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l 455 (617)
...++.++++|.+++++++..|+.+|++++.... .. ...+++.|+++.|+++|.+++ +.++..|+++|.++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~-------~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l 145 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPP-------IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNI 145 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCC-------HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCch-------HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4456999999999999999999999999976543 22 267889999999999999886 99999999999999
Q ss_pred ccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.+ ++.+..+++.|+++.|+.+|.++++++++.|+++|+||+.+ +..+..+.+.|+++.|+.+|. .+.+..++..|
T Consensus 146 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--~~~~~~v~~~a 223 (528)
T 4b8j_A 146 ASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--EHTKLSMLRNA 223 (528)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--TTCCHHHHHHH
T ss_pred hCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--cCCCHHHHHHH
Confidence 995 78899999999999999999999999999999999999966 467889999999999999995 24678999999
Q ss_pred HHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 534 ~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+++|++|+...+........|+++.|+.++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.+++
T Consensus 224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~---~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 224 TWTLSNFCRGKPQPSFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDGTND---KIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHH---HHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHH---HHHHHHHcCHHHHHHHHHcCCC
Confidence 9999999987655555566899999999998875 89999999999999964332 3456678899999999999876
Q ss_pred CCC
Q 007131 614 EGV 616 (617)
Q Consensus 614 ~~v 616 (617)
+.|
T Consensus 300 ~~v 302 (528)
T 4b8j_A 300 PSV 302 (528)
T ss_dssp HHH
T ss_pred hhH
Confidence 543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=191.80 Aligned_cols=231 Identities=20% Similarity=0.209 Sum_probs=194.1
Q ss_pred cchHHHHhcChHHHHHhhccCC-HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHH
Q 007131 371 GLDDFWLKQGAGLLLSLMQSTQ-EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (617)
Q Consensus 371 ~~~~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~ 449 (617)
....+....+++.|+++|.+++ +.++..|+++|.+++....++ +..+.+.|+++.|+.+|.++++.++..|+
T Consensus 109 ~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~-------~~~~~~~g~i~~L~~lL~~~~~~v~~~a~ 181 (528)
T 4b8j_A 109 PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN-------TKVVIDHGAVPIFVKLLGSSSDDVREQAV 181 (528)
T ss_dssp CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHhCCcHHHHHHHhcCCCHHHHHHHH
Confidence 3344333444599999998876 999999999999998654433 36788999999999999999999999999
Q ss_pred HHHHHhccc-hhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCH
Q 007131 450 KAIANLSVN-AKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGD 527 (617)
Q Consensus 450 ~~L~~ls~~-~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~ 527 (617)
++|.+|+.+ ++.+..+.+.|+++.|+.+| ...++.++..|+++|++|+............|+++.|+.+|. +.++
T Consensus 182 ~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~~~ 258 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH---SNDE 258 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT---CCCH
T ss_pred HHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC---CCCH
Confidence 999999985 66789999999999999999 567899999999999999987544444455899999999994 5788
Q ss_pred HHHHHHHHHHHHhccCCCch-HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHH
Q 007131 528 GVLERAAGALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALV 606 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~-~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~ 606 (617)
.++..|+++|.+++...+.+ ..+.+.|+++.|+.++.+++ +.++..|+++|.+|+...+ .....+.+.|+++.|+
T Consensus 259 ~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~~~~~~~l~~L~ 334 (528)
T 4b8j_A 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVTGDD---AQTQCIIDHQALPCLL 334 (528)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCH---HHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcCCH---HHHHHHHHhhhHHHHH
Confidence 99999999999999776654 57788899999999999885 8999999999999997433 2455667899999999
Q ss_pred HHhcCC-CCC
Q 007131 607 QLTRSP-HEG 615 (617)
Q Consensus 607 ~ll~~~-~~~ 615 (617)
.++.++ ++.
T Consensus 335 ~lL~~~~~~~ 344 (528)
T 4b8j_A 335 SLLTQNLKKS 344 (528)
T ss_dssp HHHHSCCCHH
T ss_pred HHHcCCCcHH
Confidence 999887 543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=186.86 Aligned_cols=225 Identities=17% Similarity=0.160 Sum_probs=192.6
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccC-CCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHh
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVIN-DENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANL 455 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l 455 (617)
...++.+++.|.+++++++..|+.+|+++.... ... ...+++.|+++.|+++|.++ ++.++..|+++|.++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~-------~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP-------IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 158 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCS-------HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 345699999999999999999999999986543 222 25788999999999999987 899999999999999
Q ss_pred ccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 456 SVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 456 s~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+.. ++.+..+++.|+++.|+.+|.+.++++++.|+++|+||+.. ++.+..+.+.|+++.|+.++. +.+..++..|
T Consensus 159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a 235 (530)
T 1wa5_B 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN---SNKPSLIRTA 235 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG---SCCHHHHHHH
T ss_pred hCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc---cCCHHHHHHH
Confidence 994 56788889999999999999999999999999999999976 478888899999999999996 3788999999
Q ss_pred HHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+++|++|+... +........++++.|+.++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.++
T Consensus 236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~v~~Lv~lL~~~ 311 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQE---AIQAVIDVRIPKRLVELLSHE 311 (530)
T ss_dssp HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHSSCHH---HHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCHH---HHHHHHhcCcHHHHHHHHCCC
Confidence 99999999775 55556666899999999999875 89999999999999974322 345566789999999999877
Q ss_pred CCCC
Q 007131 613 HEGV 616 (617)
Q Consensus 613 ~~~v 616 (617)
+..+
T Consensus 312 ~~~v 315 (530)
T 1wa5_B 312 STLV 315 (530)
T ss_dssp CHHH
T ss_pred Chhh
Confidence 6543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=169.25 Aligned_cols=181 Identities=22% Similarity=0.169 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCC
Q 007131 393 EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGG 470 (617)
Q Consensus 393 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~ 470 (617)
.+.+..|+..|.+++...+ + +..+...|+++.|+. +|.+++++++..|+++|++++. +++.+..+++.||
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-n-------a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~ 125 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-N-------AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGA 125 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-H-------HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhChh-h-------HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 3567888899998865433 2 256889999999999 9999999999999999999998 4668899999999
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccC-CCch
Q 007131 471 INILAVLARS-MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAAD-DKCS 547 (617)
Q Consensus 471 i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~-~~~~ 547 (617)
++.|+.+|++ .++.+++.|+++|.||+.+. .....+.+.|+++.|+.+|. +++..++..|+++|++|+.. ++.+
T Consensus 126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---~~d~~v~~~A~~aLs~L~~~~~~~~ 202 (296)
T 1xqr_A 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---QQVQKLKVKSAFLLQNLLVGHPEHK 202 (296)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCChHHH
Confidence 9999999996 48899999999999999755 56778888999999999996 47889999999999999865 5668
Q ss_pred HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 548 ~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
..+++.|+++.|+.+|.+++ ..+++.|+.+|.+|+..
T Consensus 203 ~~vv~~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 203 GTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhC
Confidence 89999999999999999885 89999999999999974
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-19 Score=186.98 Aligned_cols=226 Identities=23% Similarity=0.211 Sum_probs=192.2
Q ss_pred HhcC-hHHHHHhhccC-CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 377 LKQG-AGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 377 ~~~~-i~~l~~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
.+.| ++.|++++.++ ++.++..|+++|.+++....+. +..+.+.|+++.|+++|.+++++++..|+++|.+
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~-------~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~ 199 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ-------TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444 49999999886 8999999999999998654333 3678899999999999999999999999999999
Q ss_pred hccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
++.+ ++.+..+...|+++.|+.+|.+.+++++..|+++|++|+... .........|+++.|+.+|. +.++.++..
T Consensus 200 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~ 276 (530)
T 1wa5_B 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---SMDTETLVD 276 (530)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---CCCHHHHHH
T ss_pred HhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---CCCHHHHHH
Confidence 9985 678889999999999999999999999999999999999765 44445556799999999995 567899999
Q ss_pred HHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 533 AAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 533 a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
|+++|.+|+... +....+.+.|+++.|+.++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.+
T Consensus 277 a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDL---QTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH---HHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcCCHH---HHHHHHHcchHHHHHHHHcC
Confidence 999999999765 44777788899999999999875 89999999999999874332 44556678999999999998
Q ss_pred CCCCC
Q 007131 612 PHEGV 616 (617)
Q Consensus 612 ~~~~v 616 (617)
++..+
T Consensus 353 ~~~~v 357 (530)
T 1wa5_B 353 PKENI 357 (530)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 76543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-19 Score=187.67 Aligned_cols=219 Identities=23% Similarity=0.228 Sum_probs=191.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVN 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~ 458 (617)
++.++.++.++++.++..|+.+|.+|+...+ + +..+. ..|+++.|+++|.++ +++++..|+.+|++++.+
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~-------~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-S-------RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-H-------HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-c-------HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 4999999999999999999999999975432 2 23455 458999999999875 899999999999999999
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
++++..+.+.|+++.|+++|++++++++..|+++|+|++.. ++.+..+.+.|+++.|++++. +++.+++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CCCHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 467888888999999999996 46789999999999
Q ss_pred HHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCC
Q 007131 538 ANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHE 614 (617)
Q Consensus 538 ~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 614 (617)
++++.. ++++..+.+.|+++.|++++++++.+..+..++.+|++|+.+++ ....+.+.|+++.|++++.++++
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~g~~~~L~~ll~~~~~ 241 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQ 241 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhCCCh
Confidence 999975 56788999999999999999988777888999999999997433 45667788999999999887643
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=167.23 Aligned_cols=171 Identities=18% Similarity=0.167 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHH
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDL 518 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~l 518 (617)
+.+.+..|+..|.+++.+.+++..+.+.||++.|+. +|.++++++++.|+++|+|++.+ +..+..+++.|++++|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788999999999999999999999999999999 99999999999999999999975 4788999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccccc
Q 007131 519 IFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQ 597 (617)
Q Consensus 519 l~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 597 (617)
|.. +.+..++++|+++|+|++.+. +....+.+.|+++.|+.++++++ .+++..|+++|.+|+...+ .....++
T Consensus 133 L~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~A~~aLs~L~~~~~---~~~~~vv 206 (296)
T 1xqr_A 133 LDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHP---EHKGTLC 206 (296)
T ss_dssp HHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCG---GGHHHHH
T ss_pred Hcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCh---HHHHHHH
Confidence 973 346899999999999999765 45778889999999999999875 8999999999999998533 3567778
Q ss_pred ccCcHHHHHHHhcCCCCCCC
Q 007131 598 EAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 598 ~~g~~~~L~~ll~~~~~~vr 617 (617)
+.|+++.|+.+|.+++..||
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~ 226 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFH 226 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHH
T ss_pred HcCCHHHHHHHHcCCChhHH
Confidence 99999999999999887653
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=189.15 Aligned_cols=219 Identities=24% Similarity=0.238 Sum_probs=191.5
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHh-hCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMK-DGGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~ 457 (617)
.++.|+.+|.++++.++..|+.+|.+|+...+ + +..+.. .|+++.|++.|.+. +++++..|+.+|.+|+.
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~-------~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-S-------RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-H-------HHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-h-------HHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 35999999999999999999999999986543 2 134554 58999999999876 89999999999999999
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
+++++..+.+.|+++.|+++|++.++.++..|+++|.||+.. +..+..+.+.|+++.|+++|.. .+.+++..++.+
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~~~~~a~~~ 163 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDC 163 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc---CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999976 4677888889999999999964 577888999999
Q ss_pred HHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 537 LANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 537 L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
|++++. +++++..+.+.|+++.|++++++++.+.+++.|+.+|++|+.+++ .+..+++.|+++.|+.++.+++
T Consensus 164 L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~~~g~l~~L~~ll~~~~ 237 (644)
T 2z6h_A 164 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPS 237 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHHHTTHHHHHHTTTTCSC
T ss_pred HHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhcCC
Confidence 999996 667899999999999999999987667899999999999997433 4567778999999999887754
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=184.35 Aligned_cols=225 Identities=25% Similarity=0.284 Sum_probs=190.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVN 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~ 458 (617)
++.+++++.+++++++..|+++|.+|+...+++ +..+.+.|+++.|+++|.+. +++++..|+.+|++|+.+
T Consensus 268 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-------~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH-------HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 399999999999999999999999997654333 47888999999999999863 489999999999999985
Q ss_pred h----hhHHHHHHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcC----------
Q 007131 459 A----KVAKAVAEEGGINILAVLARSMN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWS---------- 523 (617)
Q Consensus 459 ~----~~~~~i~~~~~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~---------- 523 (617)
. ..+..+.+.|+++.|+++|.+++ +.+++.|+++|+|++.+++++..+.+.|+++.|+.+|....
T Consensus 341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 420 (529)
T 1jdh_A 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420 (529)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcc
Confidence 2 25778899999999999999876 69999999999999999999999999999999999996410
Q ss_pred ---------CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccc
Q 007131 524 ---------SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (617)
Q Consensus 524 ---------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (617)
....+++..++++|++|+...+++..+.+.|+++.|+.++.+++ +.++..|+++|.+++.+ .....
T Consensus 421 l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~-~~v~~~a~~~l~~l~~~----~~~~~ 495 (529)
T 1jdh_A 421 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQD----KEAAE 495 (529)
T ss_dssp -----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS----HHHHH
T ss_pred cCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCc-hHHHHHHHHHHHHHhcC----HHHHH
Confidence 01234555777888889988888899999999999999999885 89999999999999853 22466
Q ss_pred cccccCcHHHHHHHhcCCCCCCC
Q 007131 595 VGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 595 ~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+.+.|+++.|.+++.+++++||
T Consensus 496 ~i~~~~~~~~L~~l~~~~~~~v~ 518 (529)
T 1jdh_A 496 AIEAEGATAPLTELLHSRNEGVA 518 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHH
T ss_pred HHHHcCChHHHHHHhcCCCHHHH
Confidence 77789999999999999887664
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=177.01 Aligned_cols=222 Identities=23% Similarity=0.226 Sum_probs=187.7
Q ss_pred Ch-HHHHHhhccC-CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Q 007131 380 GA-GLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 380 ~i-~~l~~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
++ +.+++++.++ ++.++..|+++|.+++....++ ...+.+.|+++.|+++|++++++++..|+++|.+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ-------TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH-------HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc
Confidence 55 9999999887 8999999999999998654333 2567889999999999999999999999999999999
Q ss_pred c-hhhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 458 N-AKVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 458 ~-~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
+ ++.+..+.+.|+++.|++++.+ .++++++.|+++|++++... ..+..+. .++++.|+.++. ++++.++..+
T Consensus 137 ~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~---~~~~~v~~~a 212 (450)
T 2jdq_A 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLF---VSDTDVLADA 212 (450)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTT---CCCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHc---cCCHHHHHHH
Confidence 5 5688889999999999999996 78999999999999999654 3333333 789999999995 5788999999
Q ss_pred HHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+++|.+++... +.+..+.+.|+++.|+.++.+++ +.++..|+++|.+++...+. ....+.+.|+++.|+.+++++
T Consensus 213 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~ 288 (450)
T 2jdq_A 213 CWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-YKVVSPALRAVGNIVTGDDI---QTQVILNCSALQSLLHLLSSP 288 (450)
T ss_dssp HHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHH---HHHHHHTTTHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-hhHHHHHHHHHHHHhhCChH---HHHHHHHCccHHHHHHHHcCC
Confidence 99999999765 45677788899999999998775 89999999999999874332 344566789999999999987
Q ss_pred CCCC
Q 007131 613 HEGV 616 (617)
Q Consensus 613 ~~~v 616 (617)
++.+
T Consensus 289 ~~~v 292 (450)
T 2jdq_A 289 KESI 292 (450)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6544
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=184.39 Aligned_cols=219 Identities=23% Similarity=0.231 Sum_probs=191.2
Q ss_pred hHHHHHhhccC-CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc-
Q 007131 381 AGLLLSLMQST-QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN- 458 (617)
Q Consensus 381 i~~l~~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~- 458 (617)
++.+++.|.+. +++++..|+.+|.+|+...+ .+..+.+.|+++.|+++|+++++.++..|+++|.+++.+
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--------GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH--------HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--------hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 48999999764 89999999999999975532 236888999999999999999999999999999999986
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
++.+..+.+.|+++.|+++|++.++.++..++.+|++|+. +++++..+.+.|+++.|+.+|.. ...+.+++.++.+|
T Consensus 130 ~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRVL 207 (644)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc--CChHHHHHHHHHHH
Confidence 5678888899999999999999999999999999999996 67899999999999999999974 34678899999999
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
+||+..++++..+++.|+++.|+.++.+++ ..++..|+++|.+|+...... .. ..|+++.|++++.++++++
T Consensus 208 ~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~----~~--~~~~i~~Lv~lL~~~d~~v 279 (644)
T 2z6h_A 208 KVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQ----EG--MEGLLGTLVQLLGSDDINV 279 (644)
T ss_dssp HHHTTCTTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTTC----CS--CHHHHHHHHHHTTCSCHHH
T ss_pred HHHhcCcccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchhh----hh--hhhHHHHHHHHHcCCCHHH
Confidence 999999999999999999999999998875 899999999999999754331 11 3488999999999876544
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-18 Score=175.52 Aligned_cols=222 Identities=19% Similarity=0.185 Sum_probs=185.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccC-CCcccCCchhHHHHHhh-CCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVIN-DENASIDCGRAEAVMKD-GGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~i~~~-~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~ 457 (617)
++.+++.+.+++++++..|+..|+.+.... +... +.+.+. |+++.|+++|+++ ++.++..|+++|.+++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-------~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-------DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-------HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-------HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 588999999999999999999999976422 2111 456666 9999999999998 89999999999999998
Q ss_pred -chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 458 -NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 458 -~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
+++....+++.|+++.|+++|+++++++++.|+++|++++... +.+..+.+.|+++.|+.++. .+.+..++..|++
T Consensus 95 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 95 GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS--KQNRLTMTRNAVW 172 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT--SCCCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4567777888999999999999999999999999999999765 68888899999999999996 2467899999999
Q ss_pred HHHHhccCC-C-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 536 ALANLAADD-K-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 536 ~L~~l~~~~-~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+|++++... + .+..+. .++++.|++++.+++ +.++..|+++|.+|+...+. ....+.+.|+++.|+.++.+++
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~ 247 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSD-TDVLADACWALSYLSDGPND---KIQAVIDAGVCRRLVELLMHND 247 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSSHH---HHHHHHHTTTHHHHHHHTTCSC
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCC-HHHHHHHHHHHHHHHCCCcH---HHHHHHHcCcHHHHHHHHCCCc
Confidence 999999764 3 233333 689999999999875 89999999999999974322 3455667899999999998766
Q ss_pred CCC
Q 007131 614 EGV 616 (617)
Q Consensus 614 ~~v 616 (617)
..+
T Consensus 248 ~~v 250 (450)
T 2jdq_A 248 YKV 250 (450)
T ss_dssp HHH
T ss_pred hhH
Confidence 543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=189.15 Aligned_cols=225 Identities=24% Similarity=0.278 Sum_probs=192.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-C-HHHHHHHHHHHHHhccc
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-R-EGLQSEAAKAIANLSVN 458 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~-~~~~~~a~~~L~~ls~~ 458 (617)
++.|++++++.+++++..|+++|.+|+...+.+ +..+.+.|+++.|+++|.+. + ++++..|+++|++|+..
T Consensus 401 i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~-------~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-------HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH-------HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 389999999999999999999999997654333 36788999999999999863 3 48999999999999974
Q ss_pred h-h---hHHHHHHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcC----------
Q 007131 459 A-K---VAKAVAEEGGINILAVLARSMN-RLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWS---------- 523 (617)
Q Consensus 459 ~-~---~~~~i~~~~~i~~L~~lL~~~~-~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~---------- 523 (617)
. + .+..+...|+++.|+++|...+ +.+++.|+++|+||+..++++..+.+.|+++.|+++|....
T Consensus 474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~a 553 (780)
T 2z6g_A 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553 (780)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhc
Confidence 3 2 3568889999999999999866 49999999999999999989999999999999999996410
Q ss_pred ---------CCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccc
Q 007131 524 ---------SGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (617)
Q Consensus 524 ---------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (617)
...++++..++++|++|+....++..+.+.|+++.|+.++.+++ +.++..|+.+|.+|+.+ .....
T Consensus 554 l~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~----~~~~~ 628 (780)
T 2z6g_A 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQD----KEAAE 628 (780)
T ss_dssp ----CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHTS----HHHHH
T ss_pred cccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC----HHHHH
Confidence 01256888999999999988888999999999999999999875 89999999999999863 22466
Q ss_pred cccccCcHHHHHHHhcCCCCCCC
Q 007131 595 VGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 595 ~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+.+.|+++.|+.++.+++++||
T Consensus 629 ~i~~~g~i~~L~~Ll~~~~~~Vr 651 (780)
T 2z6g_A 629 AIEAEGATAPLTELLHSRNEGVA 651 (780)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHH
Confidence 77889999999999999887664
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-18 Score=186.41 Aligned_cols=222 Identities=23% Similarity=0.228 Sum_probs=191.2
Q ss_pred HhcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007131 377 LKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSW-REGLQSEAAKAIAN 454 (617)
Q Consensus 377 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ 454 (617)
...+++.|+.+|.++++.+|..|+.+|.+|+...+. +..+. ..|+++.|+++|.++ +++++..|+.+|.+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~--------~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~ 219 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--------RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN 219 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH--------HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh--------HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 333459999999999999999999999999754322 13455 358999999999876 89999999999999
Q ss_pred hccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 455 LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 455 ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
|+.+++++..+.+.|+|+.|+++|++.++.++..|+++|.||+.. ++.+..+.+.|+++.|+++|. +.+..++..+
T Consensus 220 Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~---~~~~~v~~~a 296 (780)
T 2z6g_A 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAIT 296 (780)
T ss_dssp HHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG---CCCHHHHHHH
T ss_pred HhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh---cCCHHHHHHH
Confidence 999999999999999999999999999999999999999999976 467777888999999999996 4678899999
Q ss_pred HHHHHHhcc-CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 534 AGALANLAA-DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 534 ~~~L~~l~~-~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+.+|++++. +++++..+.+.|+++.|++++++++.+..++.|+.+|++|+.+.. +...+++.|+++.|+.++.++
T Consensus 297 ~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~----~~~~i~~~g~l~~Ll~lL~~~ 372 (780)
T 2z6g_A 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDP 372 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT----HHHHHHHTTHHHHHGGGTTCS
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH----HHHHHHHhchHHHHHHHHcCC
Confidence 999999996 467788999999999999999988767888899999999997432 456677899999999988775
Q ss_pred C
Q 007131 613 H 613 (617)
Q Consensus 613 ~ 613 (617)
+
T Consensus 373 ~ 373 (780)
T 2z6g_A 373 S 373 (780)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-17 Score=162.06 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=78.7
Q ss_pred CCceEEEecCCCCccH-HH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 103 MNLQKLRFRGAESADS-II--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
++|++|++++|..... .. ...+++|++|++++|. +++.....+.. +++|++|+++ +|..+++.++..+...++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~-~~~L~~L~L~--~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLS--GCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT-CTTCSEEECT--TCBSCCHHHHHHHHHHCT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhc-CCCCCEEECC--CCCCCCHHHHHHHHhcCC
Confidence 4455555554443322 11 1144455555555443 44433333322 4555555553 243444444444444455
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCC-CCceEeecCCC-CCCHHH----HhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCP-NLTDIGFLDCL-NVDEVA----LGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~-~L~~L~l~~~~-~~~~~~----l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+|++|++++|..+++.++..+...+| +|++|++++|. .+++.. +..+++|++|++++|..+++..+..+ ..++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~ 247 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLN 247 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCC
Confidence 55555555544444444444444444 55555555543 233322 23445555555555433444333322 2345
Q ss_pred CCCeEEeccC-CCCHHHHHHHHhcCCCCCEEEccCC
Q 007131 254 KLVGLDVSRT-DVGPITISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 254 ~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~l~~c 288 (617)
+|++|++++| .+++..+. .+..+++|+.|++++|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence 5555555554 23333321 1233555555555554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=171.72 Aligned_cols=212 Identities=18% Similarity=0.201 Sum_probs=145.2
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEec--------cCCCCCCHHHHHHHHhcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSG--------DYCRKITDATLSVIVARH 150 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l--------~~~~~~~~~~l~~i~~~~ 150 (617)
+.++++...++...+..+...+++|++|++.+|....... ...+++|++|++ ..|..+++.++..+...|
T Consensus 292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 4556655556666666666777777777777772211111 225777777777 334557777777777777
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeecc-----CccCCc----HHHHHHHHhcCCCCceEeecCCCCCCHH
Q 007131 151 EALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLS-----GIRDIC----GDAINALAKLCPNLTDIGFLDCLNVDEV 221 (617)
Q Consensus 151 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~-----~~~~i~----~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 221 (617)
++|+.|.++ |..+++.++..++..|++|++|+++ +|..++ +.++..+...+++|++|++++ .+++.
T Consensus 372 ~~L~~L~~~---~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~ 446 (594)
T 2p1m_B 372 PKLESVLYF---CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK 446 (594)
T ss_dssp TTCCEEEEE---ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH
T ss_pred hhHHHHHHh---cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH
Confidence 777777663 6677777777777677777777777 455666 667777777777788777766 46665
Q ss_pred HH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 222 AL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 222 ~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
++ ..+++|++|++++| .+++.++..+..+|++|+.|++++|.+++.++..++..+++|+.|++++|+. ++.+..
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~ 524 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACK 524 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHH
T ss_pred HHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHH
Confidence 44 23677788888776 4677777777677778888888777777777766666777788888887775 555544
Q ss_pred HH
Q 007131 298 SA 299 (617)
Q Consensus 298 ~~ 299 (617)
.+
T Consensus 525 ~l 526 (594)
T 2p1m_B 525 LL 526 (594)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=173.39 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccC---ccCCcH----HHHHHHHhcCCCC
Q 007131 135 CRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSG---IRDICG----DAINALAKLCPNL 207 (617)
Q Consensus 135 ~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~---~~~i~~----~~l~~l~~~~~~L 207 (617)
|..+++.++..+...|++|++|+++ |..+++.++..++..|++|++|++++ |..+++ +++..+...|++|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~---~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L 438 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVY---VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEE---ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred cCccCHHHHHHHHhhCccCeEEEee---cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence 4444444444444444445555442 34444444444444444455544431 223332 2344444444445
Q ss_pred ceEeecCCC-CCCHHHH----hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 208 TDIGFLDCL-NVDEVAL----GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 208 ~~L~l~~~~-~~~~~~l----~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
++|++++|. .+++.++ ..+++|++|++++| .+++.++..+..+|++|++|++++|.+++.++..++..+++|++
T Consensus 439 ~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 555544332 1333322 22444555555443 34444444444444555555555544444444444444455555
Q ss_pred EEccCCC
Q 007131 283 LCALNCP 289 (617)
Q Consensus 283 L~l~~c~ 289 (617)
|++++|.
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 5555444
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-17 Score=177.12 Aligned_cols=225 Identities=13% Similarity=0.085 Sum_probs=175.9
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHH---HHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG---LQSEAAKA 451 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~---~~~~a~~~ 451 (617)
+.++|+ +.|+.++.++++.++..|+++|.+|+.. . ..|..+++.|+++.|+.+|.+.... .+..|+.+
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~-------~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~A 524 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-K-------NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRA 524 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-G-------GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-H-------HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 356777 9999999999999999999999999643 3 3357899999999999999887544 89999999
Q ss_pred HHHhccchhhHHHHHH---hCCHHHHHHHHhc-CC------------H-HHHHHHHHHHHHhcCCc-----chHHHHHhc
Q 007131 452 IANLSVNAKVAKAVAE---EGGINILAVLARS-MN------------R-LVAEEAAGGLWNLSVGE-----EHKGAIADA 509 (617)
Q Consensus 452 L~~ls~~~~~~~~i~~---~~~i~~L~~lL~~-~~------------~-~~~~~a~~~L~nL~~~~-----~~~~~i~~~ 509 (617)
|++|+...+....+.. .|+|++|+++|.. +. + --+..|+.||.|||..+ +.|..|++.
T Consensus 525 LArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 9999975544443421 3789999999972 11 1 12678999999999876 358888885
Q ss_pred -CChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch-HHHHH------hCCHHHHHHHHhcCCchhHHHHHHHHHHH
Q 007131 510 -GGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS-MEVAL------AGGVHALVMLARSCKFEGVQEQAARALAN 581 (617)
Q Consensus 510 -g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~------~~~~~~L~~ll~~~~~~~~~~~a~~~L~~ 581 (617)
|+++.|..+|. +++..++++|+++++||+.+++.. ..+.+ .+.++.|+.++.+++ .+++.+|+++|+|
T Consensus 605 ~ga~~~L~~LL~---s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAn 680 (778)
T 3opb_A 605 KVYWSTIENLML---DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFAN 680 (778)
T ss_dssp HHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHh---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 99999999995 578899999999999999877764 34432 224788999998875 8999999999999
Q ss_pred HhccCCCCCCcccccccc-CcHHHHHHHhcC--CCCC
Q 007131 582 LAAHGDSNSNNSAVGQEA-GALEALVQLTRS--PHEG 615 (617)
Q Consensus 582 l~~~~~~~~~~~~~~~~~-g~~~~L~~ll~~--~~~~ 615 (617)
++...+ .....+++. ++++.+++++++ ++++
T Consensus 681 Lts~~~---~ia~~ll~~~~gi~~Ll~lL~~~~~~~~ 714 (778)
T 3opb_A 681 IATTIP---LIAKELLTKKELIENAIQVFADQIDDIE 714 (778)
T ss_dssp HHHHCH---HHHHHHTTCHHHHHHHHHHHHHTTTCHH
T ss_pred hcCCCh---HHHHHHHHccccHHHHHHHHhccCCCHH
Confidence 975322 244555555 899999999998 4443
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=166.44 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=181.8
Q ss_pred HhcCh-HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCccc------------------CC-------------chhHHH
Q 007131 377 LKQGA-GLLLSLMQS-TQEDVQERAATGLATFVVINDENAS------------------ID-------------CGRAEA 423 (617)
Q Consensus 377 ~~~~i-~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~------------------~~-------------~~~~~~ 423 (617)
...++ +.|+++++. ++..+..-++.+|.||+...+.... .+ ++++..
T Consensus 373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~ 452 (778)
T 3opb_A 373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY 452 (778)
T ss_dssp HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence 44453 889999984 6778889999999999875543111 00 114567
Q ss_pred HHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHH---HHHHHHHHHHHhcCCc
Q 007131 424 VMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRL---VAEEAAGGLWNLSVGE 500 (617)
Q Consensus 424 i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~---~~~~a~~~L~nL~~~~ 500 (617)
+.+.|+++.|+.++++.++.+++.|+++|.+|+.++++|..+++.||++.|+.+|.+..+. +++.|+.+|.+|+...
T Consensus 453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999999887554 8999999999998665
Q ss_pred chHHHHHh---cCChHHHHHHHhhcCCC----------CH-HHHHHHHHHHHHhccCCC-----chHHHHHh-CCHHHHH
Q 007131 501 EHKGAIAD---AGGVKALVDLIFKWSSG----------GD-GVLERAAGALANLAADDK-----CSMEVALA-GGVHALV 560 (617)
Q Consensus 501 ~~~~~i~~---~g~i~~L~~ll~~~~~~----------~~-~~~~~a~~~L~~l~~~~~-----~~~~i~~~-~~~~~L~ 560 (617)
+....+.. .|++++|+.+|...+.. .+ .-+..|+.+|.|||..++ .|..|+++ |+++.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 55554422 48999999999620111 11 237799999999998763 37778885 9999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccccccc------CcHHHHHHHhcCCCCCC
Q 007131 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA------GALEALVQLTRSPHEGV 616 (617)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~------g~~~~L~~ll~~~~~~v 616 (617)
.++.+++ +.++.+|+++++||+.++++ ....+.+. +.++.|+.++++++.++
T Consensus 613 ~LL~s~n-~~VrrAA~elI~NL~~~~e~---i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~ 670 (778)
T 3opb_A 613 NLMLDEN-VPLQRSTLELISNMMSHPLT---IAAKFFNLENPQSLRNFNILVKLLQLSDVES 670 (778)
T ss_dssp HGGGCSS-HHHHHHHHHHHHHHHTSGGG---TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHH
T ss_pred HHHhCCC-HHHHHHHHHHHHHHhCCcHH---HHHHHHhhcCchhhccHHHHHHHHcCCCHHH
Confidence 9998874 89999999999999985543 11122221 24889999998876554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=140.92 Aligned_cols=108 Identities=10% Similarity=0.112 Sum_probs=45.4
Q ss_pred CCCCeeeccCccCCcHHHHHH---HHhcCCCCceEeecCCCCCCHH--------HHhcCcCCCeecccCCCCCCHHHHHH
Q 007131 179 PKLKKLRLSGIRDICGDAINA---LAKLCPNLTDIGFLDCLNVDEV--------ALGNVLSVRFLSVAGTSNMKWGVVSQ 247 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~--------~l~~~~~L~~L~l~~~~~i~~~~l~~ 247 (617)
++|++|++++| .+++.++.. ....+++|++|++++| .+++. .+..+++|++|++++| .+++.+...
T Consensus 159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSA 235 (386)
T ss_dssp CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHH
T ss_pred CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHH
Confidence 45555555544 343333332 2223445555555554 34432 1234445555555544 344333222
Q ss_pred H---HhcCCCCCeEEeccCCCCHHHHH---HHHhc--CCCCCEEEccCCC
Q 007131 248 V---WHKLPKLVGLDVSRTDVGPITIS---RLLTS--SKSLKVLCALNCP 289 (617)
Q Consensus 248 l---~~~~~~L~~L~l~~~~~~~~~l~---~~~~~--~~~L~~L~l~~c~ 289 (617)
+ ...+++|++|++++|.+++.+.. ..+.. +++|+.|++++|.
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 2 23444555555555544443222 22211 4455555555544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=137.99 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=101.2
Q ss_pred hCCCceEEEecCCCCcc----HHHH--hcCCCccEEeccCCCCCCHHHHHHHH---hcC---------CCcceEEEcCCC
Q 007131 101 RCMNLQKLRFRGAESAD----SIIH--LQARNLRELSGDYCRKITDATLSVIV---ARH---------EALESLQLGPDF 162 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~----~~~~--~~~~~L~~L~l~~~~~~~~~~l~~i~---~~~---------~~L~~L~l~~~~ 162 (617)
.+++|++|+|+++.+.. .+.. ..+++|++|+|++|. +++.+...+. ..+ ++|++|+++ +
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~--~ 168 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG--R 168 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC--S
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC--C
Confidence 45666666666665543 1111 256666666666665 4443332222 222 666666664 2
Q ss_pred CCCCCHHHHHHHH---hcCCCCCeeeccCccCCcHHHHHHHHh----cCCCCceEeecCCCCCCHH-------HHhcCcC
Q 007131 163 CERITSDAVKAIA---LCCPKLKKLRLSGIRDICGDAINALAK----LCPNLTDIGFLDCLNVDEV-------ALGNVLS 228 (617)
Q Consensus 163 ~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~-------~l~~~~~ 228 (617)
| .+++.++..++ ..+++|++|++++| .+++.++..+.. .+++|++|++++| .+++. .+..+++
T Consensus 169 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 169 N-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp S-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTT
T ss_pred C-CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCC
Confidence 3 45544444322 24566666666666 566555444332 5566666666666 35432 2345666
Q ss_pred CCeecccCCCCCCHHHHHHHHhc-----CCCCCeEEeccCCCCHHH---HHHHH-hcCCCCCEEEccCCCCCChh
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHK-----LPKLVGLDVSRTDVGPIT---ISRLL-TSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~-----~~~L~~L~l~~~~~~~~~---l~~~~-~~~~~L~~L~l~~c~~~~~~ 294 (617)
|++|++++| .+++.+...+... +++|++|++++|.++..+ ++..+ .++++|++|++++|++....
T Consensus 246 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666666665 4555554443321 566666666666666532 22222 44666666666666644333
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=143.22 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=107.2
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHH----H--HhcCCCccEEeccCCCCCCHHHHHHHHhcCC---
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSI----I--HLQARNLRELSGDYCRKITDATLSVIVARHE--- 151 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~----~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~--- 151 (617)
+.++++...++...+..+...+++|++|++++|...... . ...+++|++|+++++. +++.+...+...++
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTT
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCC
Confidence 445555555555555555555666666666666544321 1 1145666666666654 55555555555554
Q ss_pred -CcceEEEcCCCCCCCCHHHHH---HHHhcCCCCCeeeccCccCCcHHHHHHHHhc----CCCCceEeecCCCCCCHH--
Q 007131 152 -ALESLQLGPDFCERITSDAVK---AIALCCPKLKKLRLSGIRDICGDAINALAKL----CPNLTDIGFLDCLNVDEV-- 221 (617)
Q Consensus 152 -~L~~L~l~~~~~~~i~~~~l~---~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~-- 221 (617)
+|++|+++ +| .+++.+.. .....+++|++|+++++ .+++.++..+... .++|++|++++| .+++.
T Consensus 85 ~~L~~L~L~--~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 159 (461)
T 1z7x_W 85 CKIQKLSLQ--NC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC 159 (461)
T ss_dssp CCCCEEECT--TS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH
T ss_pred CceeEEEcc--CC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH
Confidence 46666664 23 45543322 22234566666666666 4555555444432 335666666666 34432
Q ss_pred -----HHhcCcCCCeecccCCCCCCHHHHHHHHh----cCCCCCeEEeccCCCCHHH---HHHHHhcCCCCCEEEccCCC
Q 007131 222 -----ALGNVLSVRFLSVAGTSNMKWGVVSQVWH----KLPKLVGLDVSRTDVGPIT---ISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 222 -----~l~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~c~ 289 (617)
.+..+++|++|++++| .+++.++..+.. ..++|++|++++|.++... +...+..+++|++|++++|.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 2344566666666665 355555444433 2346666666665554432 34444455666666666654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-13 Score=138.46 Aligned_cols=208 Identities=20% Similarity=0.254 Sum_probs=141.9
Q ss_pred ccccCCCCCCCCHHHHHHHHHhCC----CceEEEecCCCCccH----HHH--hcCCCccEEeccCCCCCCHHHHHHHHhc
Q 007131 80 WSSLDLRAHKCDIAMAASLASRCM----NLQKLRFRGAESADS----IIH--LQARNLRELSGDYCRKITDATLSVIVAR 149 (617)
Q Consensus 80 w~~l~l~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~----~~~--~~~~~L~~L~l~~~~~~~~~~l~~i~~~ 149 (617)
.+.+++++..+.+.....+...++ +|++|++++|...+. +.. ..+++|++|+++++. +++.+...+...
T Consensus 58 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~ 136 (461)
T 1z7x_W 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEG 136 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHH
T ss_pred cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHH
Confidence 467777777777766666666665 688888888876532 121 267788888888876 777666655543
Q ss_pred ----CCCcceEEEcCCCCCCCCHHHHHHH---HhcCCCCCeeeccCccCCcHHHHHHHHh----cCCCCceEeecCCCCC
Q 007131 150 ----HEALESLQLGPDFCERITSDAVKAI---ALCCPKLKKLRLSGIRDICGDAINALAK----LCPNLTDIGFLDCLNV 218 (617)
Q Consensus 150 ----~~~L~~L~l~~~~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~ 218 (617)
.++|++|+++ +| .+++.+...+ ...+++|++|+++++ .+++.+...+.. ..++|++|++++| .+
T Consensus 137 l~~~~~~L~~L~L~--~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l 211 (461)
T 1z7x_W 137 LLDPQCRLEKLQLE--YC-SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GV 211 (461)
T ss_dssp HTSTTCCCCEEECT--TS-CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CC
T ss_pred HhcCCCcceEEECC--CC-CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CC
Confidence 4568888885 35 6666543332 344788888888887 577766665554 3458888888888 45
Q ss_pred CHH-------HHhcCcCCCeecccCCCCCCHHHHHHHHh----cCCCCCeEEeccCCCCHHH---HHHHHhcCCCCCEEE
Q 007131 219 DEV-------ALGNVLSVRFLSVAGTSNMKWGVVSQVWH----KLPKLVGLDVSRTDVGPIT---ISRLLTSSKSLKVLC 284 (617)
Q Consensus 219 ~~~-------~l~~~~~L~~L~l~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~ 284 (617)
++. .+..+++|++|++++| .+++.++..+.. .+++|++|++++|.++..+ +...+..+++|++|+
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 542 3456788888888887 677766655543 4778888888888877765 455556688888888
Q ss_pred ccCCCCCChhH
Q 007131 285 ALNCPVLEEEN 295 (617)
Q Consensus 285 l~~c~~~~~~~ 295 (617)
+++|. +++.+
T Consensus 291 Ls~n~-i~~~~ 300 (461)
T 1z7x_W 291 LAGNE-LGDEG 300 (461)
T ss_dssp CTTCC-CHHHH
T ss_pred CCCCC-CchHH
Confidence 88875 44443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5e-12 Score=127.44 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh----cCCCCCeeeccCccCCcHHHHHHH
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL----CCPKLKKLRLSGIRDICGDAINAL 200 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~l~~l 200 (617)
++|++|+|++|. +++.++..+...+++|+.|+|+ +| .+++.+...++. .+++|++|+|++| .+++.+...+
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls--~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQ--LN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECC--SS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcC--CC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHH
Confidence 455555555554 5555555444444455555553 23 455544444332 2345555555555 4544443333
Q ss_pred H---hcCCCCceEeecCCCCCCHHH-------HhcCcCCCeecccCCCCCCHHHHHHHHh---cCCCCCeEEeccCCCCH
Q 007131 201 A---KLCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSNMKWGVVSQVWH---KLPKLVGLDVSRTDVGP 267 (617)
Q Consensus 201 ~---~~~~~L~~L~l~~~~~~~~~~-------l~~~~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~ 267 (617)
. ..+++|++|++++| .+++.+ +..+++|++|++++| .+++.+...+.. .+++|++|++++|.+++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 2 23445555555555 344432 123344555555444 344444333322 33445555555544444
Q ss_pred HHHH
Q 007131 268 ITIS 271 (617)
Q Consensus 268 ~~l~ 271 (617)
.+..
T Consensus 254 ~g~~ 257 (372)
T 3un9_A 254 EGRQ 257 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-12 Score=125.88 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=137.3
Q ss_pred HHhcCCCccEEeccCCCCCCHHHHHHHHh----cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHH
Q 007131 120 IHLQARNLRELSGDYCRKITDATLSVIVA----RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGD 195 (617)
Q Consensus 120 ~~~~~~~L~~L~l~~~~~~~~~~l~~i~~----~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~ 195 (617)
.....++|++|++++|. +++.....+.. .+++|++|+|+ +| .+++.++..++..+++|++|+|++| .+++.
T Consensus 67 ~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls--~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~ 141 (372)
T 3un9_A 67 SAEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLA--SC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPE 141 (372)
T ss_dssp HHHHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECT--TC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHH
T ss_pred HHHHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEec--CC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHH
Confidence 33456789999999987 88776555544 24699999996 35 7999999988888889999999999 89998
Q ss_pred HHHHHHh----cCCCCceEeecCCCCCCHHH-------HhcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEec
Q 007131 196 AINALAK----LCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDVS 261 (617)
Q Consensus 196 ~l~~l~~----~~~~L~~L~l~~~~~~~~~~-------l~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~ 261 (617)
+...+.. .+++|++|++++| .+++.+ +..+++|++|++++| .+++.++..+. ..+++|++|+++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred HHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 8777653 3589999999999 687744 356899999999998 68888876665 567899999999
Q ss_pred cCCCCHHHHHH---HHhcCCCCCEEEccCCCCCChhHHHHHH
Q 007131 262 RTDVGPITISR---LLTSSKSLKVLCALNCPVLEEENNISAV 300 (617)
Q Consensus 262 ~~~~~~~~l~~---~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 300 (617)
+|.+++.+... .+..+++|++|++++|+ +++.+...+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~ 260 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLR 260 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHH
Confidence 99999875544 45567999999999997 6666655443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-13 Score=115.45 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc---CCCCCeeeccCccCCcHHHHHHHH
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC---CPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
..|++|++++|. ++|.++..+ ..|++|++|+|+ +|..++|.++..++.. |++|++|+|++|..+|+.++..+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~--~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLC--KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEE--SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeC--CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 357777777776 777776665 357777777774 4777777777777652 456777777777667777776665
Q ss_pred hcCCCCceEeecCCCCCCHHH
Q 007131 202 KLCPNLTDIGFLDCLNVDEVA 222 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~ 222 (617)
.|++|++|++++|+.+++.+
T Consensus 137 -~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -GCTTCCEEEEESCTTCCCHH
T ss_pred -cCCCCCEEECCCCCCCCchH
Confidence 35777777777776666654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=114.77 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=54.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhc---CCCCceEeecCCCCCCHHHH---hc
Q 007131 152 ALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKL---CPNLTDIGFLDCLNVDEVAL---GN 225 (617)
Q Consensus 152 ~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~l---~~ 225 (617)
+|+.|+++ +|. +++.++..+. .|++|++|+|++|..++|.++..+... +++|++|++++|..+||.++ ..
T Consensus 62 ~L~~LDLs--~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDAT--DSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEE--SCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCc--CCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 45666664 353 5555555553 456666666666655666666555542 34566666666655666544 34
Q ss_pred CcCCCeecccCCCCCCHHHH--HHHHhcCCCCC
Q 007131 226 VLSVRFLSVAGTSNMKWGVV--SQVWHKLPKLV 256 (617)
Q Consensus 226 ~~~L~~L~l~~~~~i~~~~l--~~l~~~~~~L~ 256 (617)
+++|++|++++|+.+++.++ ..+-..+|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 55566666666655655442 33334555543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=124.92 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCccEEeccCCCCCCH---HHHHHHHhcC-CCcceEEEcCCCCCCCCHHHHHHHHh---c-CCCCCeeeccCccCCcHHH
Q 007131 125 RNLRELSGDYCRKITD---ATLSVIVARH-EALESLQLGPDFCERITSDAVKAIAL---C-CPKLKKLRLSGIRDICGDA 196 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~---~~l~~i~~~~-~~L~~L~l~~~~~~~i~~~~l~~l~~---~-~~~L~~L~l~~~~~i~~~~ 196 (617)
++|++|++++|. +++ ..+......+ ++|++|+++ +| .+++.+...++. . +++|++|++++| .+++.+
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~ 154 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLG--WN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKS 154 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECC--SS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSC
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECc--CC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHH
Confidence 556666665554 322 2233333333 456666663 23 344333333222 1 345666666655 444333
Q ss_pred HHHHH---hcCC-CCceEeecCCCCCCHH-------HHhcC-cCCCeecccCCCCCCHHHHHHHH----hcCCCCCeEEe
Q 007131 197 INALA---KLCP-NLTDIGFLDCLNVDEV-------ALGNV-LSVRFLSVAGTSNMKWGVVSQVW----HKLPKLVGLDV 260 (617)
Q Consensus 197 l~~l~---~~~~-~L~~L~l~~~~~~~~~-------~l~~~-~~L~~L~l~~~~~i~~~~l~~l~----~~~~~L~~L~l 260 (617)
...+. ...+ +|++|++++| .+++. .+..+ ++|++|++++| .+++.+...+. ..+++|++|++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEEC
Confidence 22221 2223 5666666655 33321 12333 35666666555 34332222221 12345666666
Q ss_pred ccCCCCH---HHHHHHHhcCCCCCEEEccCCC
Q 007131 261 SRTDVGP---ITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 261 ~~~~~~~---~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|.+++ ..+..++..+++|+.|++++|.
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 6654433 3334444455556666665553
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=120.47 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=132.6
Q ss_pred HHHHHHhCCCceEEEecCCCCccHHH------HhcCC-CccEEeccCCCCCCHH---HHHHHHhcC-CCcceEEEcCCCC
Q 007131 95 AASLASRCMNLQKLRFRGAESADSII------HLQAR-NLRELSGDYCRKITDA---TLSVIVARH-EALESLQLGPDFC 163 (617)
Q Consensus 95 ~~~l~~~~~~L~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~~~~---~l~~i~~~~-~~L~~L~l~~~~~ 163 (617)
...+....++|++|++++|....... ...++ +|++|++++|. +++. .+..+...+ ++|++|+|+ +|
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls--~n 90 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLS--GN 90 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECC--SS
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECc--CC
Confidence 33445555679999999997654321 12566 89999999986 5543 345544444 899999996 35
Q ss_pred CCCCHHHHH---HHHhcC-CCCCeeeccCccCCcHHHHHHHHh---c-CCCCceEeecCCCCCCHHH-------HhcCc-
Q 007131 164 ERITSDAVK---AIALCC-PKLKKLRLSGIRDICGDAINALAK---L-CPNLTDIGFLDCLNVDEVA-------LGNVL- 227 (617)
Q Consensus 164 ~~i~~~~l~---~l~~~~-~~L~~L~l~~~~~i~~~~l~~l~~---~-~~~L~~L~l~~~~~~~~~~-------l~~~~- 227 (617)
.+++.+.. .....+ ++|++|++++| .+++.+...+.. . +++|++|++++| .+++.+ +..++
T Consensus 91 -~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 91 -FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp -CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCT
T ss_pred -cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCc
Confidence 56544333 333345 89999999999 676655544443 3 469999999999 676532 34555
Q ss_pred CCCeecccCCCCCCHH---HHHHHHhcC-CCCCeEEeccCCCCH---HHHHHHHhc-CCCCCEEEccCCCCCCh
Q 007131 228 SVRFLSVAGTSNMKWG---VVSQVWHKL-PKLVGLDVSRTDVGP---ITISRLLTS-SKSLKVLCALNCPVLEE 293 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~---~l~~l~~~~-~~L~~L~l~~~~~~~---~~l~~~~~~-~~~L~~L~l~~c~~~~~ 293 (617)
+|++|++++| .+++. .+......+ ++|++|++++|.+++ ..+...+.. .++|+.|++++|.+...
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 9999999998 45443 344444556 499999999987655 445555554 56999999999975443
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-10 Score=117.01 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=179.3
Q ss_pred hHHHHhcChHHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCccc-------CC---chhHHHH-HhhCCHHHHHHHHhc
Q 007131 373 DDFWLKQGAGLLLSLMQS--TQEDVQERAATGLATFVVINDENAS-------ID---CGRAEAV-MKDGGIRLLLDLAKS 439 (617)
Q Consensus 373 ~~~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~-------~~---~~~~~~i-~~~~~i~~Lv~lL~~ 439 (617)
+..++..|++.++..|+. ++.++...++.+|.++....+.... .+ ....+.+ .+.+.++.|+.+|++
T Consensus 54 ~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~ 133 (651)
T 3grl_A 54 RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE 133 (651)
T ss_dssp TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC
T ss_pred HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC
Confidence 333578888999999965 5788888999999887554332100 00 0112222 467899999999999
Q ss_pred CCHHHHHHHHHHHHHhccch-h-hHHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHH
Q 007131 440 WREGLQSEAAKAIANLSVNA-K-VAKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKAL 515 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~-~-~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L 515 (617)
.+..+|..++..|..|+.+. + .++.|.. .+||+.|+.+|.+..+.++..|+..|.+|+.+....++++. +|+++.|
T Consensus 134 ~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~L 213 (651)
T 3grl_A 134 FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERL 213 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHH
Confidence 99999999999999999843 3 6777775 58999999999999999999999999999987766555555 7999999
Q ss_pred HHHHhh-cCCCCHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHhcCCch-----hHHHH---HHHHHHHHhcc
Q 007131 516 VDLIFK-WSSGGDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFE-----GVQEQ---AARALANLAAH 585 (617)
Q Consensus 516 ~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~~~~~~-----~~~~~---a~~~L~~l~~~ 585 (617)
+.++.. +......++..++.++.||...+. ++..+.+.|+++.|..++..+++. ....+ +..++.-+...
T Consensus 214 f~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~ 293 (651)
T 3grl_A 214 LDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSP 293 (651)
T ss_dssp HHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCC
Confidence 999976 222234688999999999997654 788899999999999998754321 23333 66677777763
Q ss_pred CCC---CCCccccccccCcHHHHHHHhcCC
Q 007131 586 GDS---NSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 586 ~~~---~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
+.. ...+...+.+.|+++.|++++.++
T Consensus 294 ~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 294 NNPPGATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp TSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 221 223455677899999999988764
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-11 Score=118.66 Aligned_cols=177 Identities=15% Similarity=0.157 Sum_probs=85.1
Q ss_pred HHhCCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHH------
Q 007131 99 ASRCMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAV------ 171 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l------ 171 (617)
...+++|++|++++|....... ...+++|++|++++|. +++... ...+++|+.|+++ +| .+++...
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~--~n-~l~~~~~~~~l~~ 200 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSLN--YN-QIEDISPLASLTS 200 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECT--TS-CCCCCGGGGGCTT
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEcc--CC-cccccccccCCCc
Confidence 3455677777777664332211 2255666666666554 221111 3345555555553 22 2221110
Q ss_pred --------------HHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCC
Q 007131 172 --------------KAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGT 237 (617)
Q Consensus 172 --------------~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~ 237 (617)
.. ...+++|++|++++| .++... . ...+++|++|++++|...+...+..+++|++|++++|
T Consensus 201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDLS--P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred cceeecccCCCCCCch-hhcCCcCCEEEccCC-ccCCCc--c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence 00 223455555555555 332211 1 3345566666666653222234555666666666665
Q ss_pred CCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 238 SNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 238 ~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
.+++. .....+++|+.|++++|.++... +..+..+++|+.|++++|++..
T Consensus 276 -~l~~~---~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 276 -QISDI---SVLNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp -CCCCC---GGGGGCTTCSEEECCSSCCCGGG-HHHHHTCTTCSEEECCSSSCCC
T ss_pred -ccCCC---hhhcCCCCCCEEECcCCcCCCcC-hhHhhccccCCEEEccCCcccc
Confidence 33321 12345666666666666555433 2334456666666666665443
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-11 Score=82.53 Aligned_cols=48 Identities=35% Similarity=0.844 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccC
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~ 84 (617)
...|..||+|++.+||+||+.+|+.+++.|||+|+.+..++.+|+.+|
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 456999999999999999999999999999999999999999999875
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-10 Score=116.62 Aligned_cols=170 Identities=20% Similarity=0.143 Sum_probs=115.1
Q ss_pred hCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
.+++|++|++++|..........+++|+.|+++++. +++... ...+++|++|+++ +| .+++... ...+++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~--~n-~l~~~~~---~~~l~~ 244 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIG--NN-KITDLSP---LANLSQ 244 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECC--SS-CCCCCGG---GTTCTT
T ss_pred cCCCCCEEEccCCcccccccccCCCccceeecccCC-CCCCch---hhcCCcCCEEEcc--CC-ccCCCcc---hhcCCC
Confidence 345555555555543322222355666666666654 322111 4568899999996 34 4443221 456899
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
|++|+++++ .++.- . ....+++|++|++++|. +++ ..+..+++|++|++++| .++..... ....+++|++|+
T Consensus 245 L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~l~~l~~L~~L~ 317 (347)
T 4fmz_A 245 LTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNN-QLGNEDME-VIGGLTNLTTLF 317 (347)
T ss_dssp CCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS-CCCGGGHH-HHHTCTTCSEEE
T ss_pred CCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCC-cCCCcChh-HhhccccCCEEE
Confidence 999999998 55542 2 24567999999999994 444 56788999999999998 56554433 345799999999
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
+++|.++... + +..+++|+.|++++|++
T Consensus 318 L~~n~l~~~~-~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 318 LSQNHITDIR-P--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSSCCCCG-G--GGGCTTCSEESSSCC--
T ss_pred ccCCcccccc-C--hhhhhccceeehhhhcc
Confidence 9999876543 1 56799999999999975
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.7e-11 Score=109.22 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|++|+++++....-.....+++|++|++++|. +++. . ....+++|++|++++ + .+++.....+. .+++|
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~--~-~l~~l~~L~~L~l~~--n-~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNY--N-PISGLSNLERLRIMG--K-DVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCC--G-GGTTCTTCCEEEEEC--T-TCBGGGSCCCT-TCTTC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcc--h-hhhcCCCCCEEEeEC--C-ccCcccChhhc-CCCCC
Confidence 35678888877755431122256677777777763 4332 1 233466777777752 3 44432222222 35666
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
++|+++++ .+++.....+. .+++|++|++++|..+++ ..+..+++|++|++++| .+++- . ....+++|++|++
T Consensus 115 ~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n-~i~~~--~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 115 TLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDY--R-GIEDFPKLNQLYA 188 (197)
T ss_dssp CEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB-CCCCC--T-TGGGCSSCCEEEE
T ss_pred CEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC-CCcCh--H-HhccCCCCCEEEe
Confidence 66666666 45543333332 456666666666642333 34455566666666555 23221 1 1234555555555
Q ss_pred ccCCC
Q 007131 261 SRTDV 265 (617)
Q Consensus 261 ~~~~~ 265 (617)
++|.+
T Consensus 189 ~~N~i 193 (197)
T 4ezg_A 189 FSQTI 193 (197)
T ss_dssp CBC--
T ss_pred eCccc
Confidence 55543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=100.25 Aligned_cols=169 Identities=19% Similarity=0.158 Sum_probs=117.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++..|+++++.++..|+..|..+. ..++++.|+++|.++++.++..|+.+|..+..
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD---- 79 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 78888888888999999988888642 13467788888888888888888888877642
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
.++++.|+++|.++++.++..|+.+|..+.. .+.++.|+.++. +.++.++..|+.+|..+.
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHHHHHHHHHHHcC
Confidence 3456777777777777888888888777743 246677777773 466777777777777763
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
. ...++.|..++.+++ +.++..|+.+|..+.. ..+++.|..+++++++.|
T Consensus 141 ~----------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 141 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHH
T ss_pred C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHH
Confidence 2 235666667666553 6777777777777631 234566666666555443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=98.63 Aligned_cols=169 Identities=19% Similarity=0.156 Sum_probs=135.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++++|.++++.++..|+.+|..+. ..+.++.|+++|.++++.++..|+.+|..+..
T Consensus 17 ~~~i~~L~~~~~~vr~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 17 EMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcC------------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 78999999999999999999998652 13467899999998899999999999987642
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
.++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.++. +.++.++..|+.+|..+.
T Consensus 75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 2468888999999999999999999998753 247888888884 578889999999998874
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
. ...++.|..++.+++ ..++..|+.+|..+. ...+++.|..+++++++.|
T Consensus 136 ~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~--------------~~~~~~~L~~~l~d~~~~v 185 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKDED-GWVRQSAADALGEIG--------------GERVRAAMEKLAETGTGFA 185 (201)
T ss_dssp C----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHC--------------SHHHHHHHHHHHHHCCHHH
T ss_pred C----------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhC--------------chhHHHHHHHHHhCCCHHH
Confidence 2 356788888888764 789999999999883 1235777777777666544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-11 Score=114.97 Aligned_cols=170 Identities=20% Similarity=0.160 Sum_probs=123.4
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|+.|+++++..........+++|++|+++++. +++.. . ...+++|+.|+++ ++ .+++ +.. ...+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~-l~~~~--~-l~~l~~L~~L~l~--~n-~l~~--~~~-l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLD--EN-KVKD--LSS-LKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECC--SS-CCCC--GGG-GTTCTTC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc-cCCCc--c-cccCCCCCEEECC--CC-cCCC--Chh-hccCCCC
Confidence 46789999998865432223368999999999886 44321 1 5678999999996 34 4554 223 3458999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEec
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++|+++++ .++. +.. ...+++|++|++++|..-.-..+..+++|++|++++| .+++.. . ...+++|++|+++
T Consensus 115 ~~L~L~~n-~i~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 115 KSLSLEHN-GISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLS 186 (291)
T ss_dssp CEEECTTS-CCCC--CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECC
T ss_pred CEEECCCC-cCCC--Chh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCC-ccccch--h-hcCCCccCEEECC
Confidence 99999998 5554 222 3467999999999984333366788999999999998 444322 1 5679999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 262 RTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|.++.- +. +..+++|+.|++++|++..
T Consensus 187 ~N~i~~l--~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 187 KNHISDL--RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCBC--GG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCCC--hh-hccCCCCCEEECcCCcccC
Confidence 9887653 22 5679999999999987544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=112.91 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=108.5
Q ss_pred HhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
..+++|++|++++|..........+++|++|+++++. +++. . ....+++|+.|+++ +| .+++. .. ...++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~l~--~n-~l~~~--~~-l~~l~ 129 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNV--S-AIAGLQSIKTLDLT--ST-QITDV--TP-LAGLS 129 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCC--G-GGTTCTTCCEEECT--TS-CCCCC--GG-GTTCT
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCc--h-hhcCCCCCCEEECC--CC-CCCCc--hh-hcCCC
Confidence 4567888888887755432223467788888888776 4332 1 24457788888885 23 44431 22 34577
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
+|++|+++++ .++.- .. ...+++|++|++++| .+++ ..+..+++|++|++++| .+++.. . ...+++|++|
T Consensus 130 ~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L 200 (308)
T 1h6u_A 130 NLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN-KISDIS--P-LASLPNLIEV 200 (308)
T ss_dssp TCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEE
T ss_pred CCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCC-ccCcCh--h-hcCCCCCCEE
Confidence 8888888877 44331 11 346678888888887 3443 34677788888888876 333211 1 4567888888
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++++|.++... . +..+++|+.|++++|++..
T Consensus 201 ~L~~N~l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 201 HLKNNQISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECTTSCCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred EccCCccCccc--c-ccCCCCCCEEEccCCeeec
Confidence 88887765432 1 4668888888888877543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-12 Score=123.86 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=35.3
Q ss_pred cCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 280 (617)
.+++|++|++++|. ++. ..+..+++|++|++++|...+. +......+++|++|++++|..... ++..+.++++|
T Consensus 204 ~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L 279 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQL 279 (328)
T ss_dssp GCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-CCTTGGGCTTC
T ss_pred CCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-cchhhhcCCCC
Confidence 34455555555442 221 2244445555555555422211 011123345555555555432211 12223345555
Q ss_pred CEEEccCCCCCC
Q 007131 281 KVLCALNCPVLE 292 (617)
Q Consensus 281 ~~L~l~~c~~~~ 292 (617)
++|++++|+.++
T Consensus 280 ~~L~L~~n~~~~ 291 (328)
T 4fcg_A 280 EKLDLRGCVNLS 291 (328)
T ss_dssp CEEECTTCTTCC
T ss_pred CEEeCCCCCchh
Confidence 555555554443
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-09 Score=112.14 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=172.3
Q ss_pred cChHHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHh
Q 007131 379 QGAGLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANL 455 (617)
Q Consensus 379 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l 455 (617)
..|+.|++-+. +.-.+-|+.|+..|..+++.. +.-+..++++.|+..|+.. |.++...+..+|.++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----------~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l 89 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----------RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI 89 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----------TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----------HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33477777774 456777999999999986322 2345688899999999875 788888899999887
Q ss_pred ccchh------------------hHHHHH-HhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chHHHHHh-cCChH
Q 007131 456 SVNAK------------------VAKAVA-EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIAD-AGGVK 513 (617)
Q Consensus 456 s~~~~------------------~~~~i~-~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~~i~~-~g~i~ 513 (617)
...++ ..+.+. +.++|+.|+.+|++.+-.++.+++..|..|+... .++..|.. .+|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~ 169 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH
Confidence 65221 122333 4567999999999999999999999999998544 37888885 69999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH-hCCHHHHHHHHhcCC---chhHHHHHHHHHHHHhccCCCC
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL-AGGVHALVMLARSCK---FEGVQEQAARALANLAAHGDSN 589 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~-~~~~~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~ 589 (617)
.|+.+|. +..+.++-.|+..|.+|+.++....+++. +|+++.|+.+++... ...+.+.+..+|.||...+..
T Consensus 170 ~Lv~lL~---d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s- 245 (651)
T 3grl_A 170 RLMDLLA---DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS- 245 (651)
T ss_dssp HHHGGGG---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHh---CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH-
Confidence 9999995 46788999999999999998887666655 499999999997532 247889999999999985433
Q ss_pred CCccccccccCcHHHHHHHhcCCC
Q 007131 590 SNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 590 ~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+...+.|.|+++.|..++..+.
T Consensus 246 --NQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 246 --NQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp --HHHHHHHTTCGGGGGGGGCCCS
T ss_pred --HHHHHHHcCCHHHHHHHhCCCc
Confidence 6778889999999999987643
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=113.23 Aligned_cols=172 Identities=17% Similarity=0.117 Sum_probs=126.9
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|++|+++++..........+++|++|+++++. +++..- ...+++|+.|++++ + .+++. .. ...+++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L~~--n-~l~~~--~~-~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELELSG--N-PLKNV--SA-IAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEECCS--C-CCSCC--GG-GTTCTTC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEccC--C-cCCCc--hh-hcCCCCC
Confidence 46899999999865432222368999999999986 544222 56799999999963 4 45442 22 3458999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEec
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++|+++++ .++. +.. ...+++|++|++++|..-....+..+++|++|++++| .+++. .. ...+++|++|+++
T Consensus 110 ~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 110 KTLDLTST-QITD--VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDL--TP-LANLSKLTTLKAD 181 (308)
T ss_dssp CEEECTTS-CCCC--CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECC
T ss_pred CEEECCCC-CCCC--chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC-cCCCC--hh-hcCCCCCCEEECC
Confidence 99999998 5554 222 4578999999999994333345889999999999998 45432 12 5679999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 262 RTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+|.++... . +..+++|+.|++++|.+....
T Consensus 182 ~n~l~~~~--~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 182 DNKISDIS--P-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSCCCCCG--G-GGGCTTCCEEECTTSCCCBCG
T ss_pred CCccCcCh--h-hcCCCCCCEEEccCCccCccc
Confidence 98876432 1 567999999999999876555
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=8e-09 Score=92.95 Aligned_cols=126 Identities=20% Similarity=0.175 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCC
Q 007131 141 ATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN 217 (617)
Q Consensus 141 ~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 217 (617)
..+..+...+++|++|+|+ +|..+++.++..++. .+++|++|+|++| .+++++...++..
T Consensus 26 ~~l~~~l~~~~~L~~L~L~--~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~-------------- 88 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLN--NIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEM-------------- 88 (185)
T ss_dssp HHHHHHHTTCTTCCEEECT--TCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHH--------------
T ss_pred HHHHHHHhcCCCCCEEEec--CCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHH--------------
Confidence 3455566666777777774 243666666655543 2456667777666 5666665544321
Q ss_pred CCHHHHhcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEe--ccCCCCHHH---HHHHHhcCCCCCEEEccCCC
Q 007131 218 VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDV--SRTDVGPIT---ISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 218 ~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l--~~~~~~~~~---l~~~~~~~~~L~~L~l~~c~ 289 (617)
+...++|++|++++| .+++.++..++ ..+++|++|++ ++|.+++.+ +...+...+.|+.|++++|.
T Consensus 89 -----L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 89 -----LKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -----HHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -----HHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 122344444455444 45555544443 23455666666 556666554 33334445667777776665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-10 Score=114.61 Aligned_cols=175 Identities=19% Similarity=0.125 Sum_probs=86.8
Q ss_pred hCCCceEEEecCCCCccH--HHHh----cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHH-HHH-
Q 007131 101 RCMNLQKLRFRGAESADS--IIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSD-AVK- 172 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~--~~~~----~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~-~l~- 172 (617)
.+++|++|+++++..... .+.. ..++|++|+++++. ++.... .....+++|++|+++ ++ .+... ++.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~ 193 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC-EQVRVFPALSTLDLS--DN-PELGERGLIS 193 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT-TTCCCCSSCCEEECC--SC-TTCHHHHHHH
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH-HHhccCCCCCEEECC--CC-CcCcchHHHH
Confidence 345666666666543321 1110 12566666666654 222110 112345666677664 23 33321 121
Q ss_pred HH-HhcCCCCCeeeccCccCCcH--HHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHH
Q 007131 173 AI-ALCCPKLKKLRLSGIRDICG--DAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVV 245 (617)
Q Consensus 173 ~l-~~~~~~L~~L~l~~~~~i~~--~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l 245 (617)
.+ ...+++|++|+++++ .++. .....+...+++|++|++++| .++. ..+..+++|++|++++| .++ .
T Consensus 194 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~--~- 267 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLK--Q- 267 (312)
T ss_dssp HSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCS--S-
T ss_pred HHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccC--h-
Confidence 11 144566777777766 4442 222234445567777777766 3333 22334566777777665 333 1
Q ss_pred HHHHhc-CCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 246 SQVWHK-LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 246 ~~l~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+... .++|++|++++|.++.. +. +..+++|++|++++|++.
T Consensus 268 --ip~~~~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 268 --VPKGLPAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --CCSSCCSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCTTT
T ss_pred --hhhhccCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCCCC
Confidence 1111 15677777777665433 22 445667777777766643
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-11 Score=116.59 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=122.7
Q ss_pred HhCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 100 SRCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
..+++|++|+++++...... ....+++|++|+++++..++... ......+++|++|++++ + .++... ......
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~-~~~~~~ 127 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDR--C-GLQELG-PGLFRG 127 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTT--S-CCCCCC-TTTTTT
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCC--C-cCCEEC-HhHhhC
Confidence 45688999999888654321 12267899999998885333311 12234578999999963 3 343211 112345
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+++++ .++.-.. .....+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++
T Consensus 128 l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~ 202 (285)
T 1ozn_A 128 LAALQYLYLQDN-ALQALPD-DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVH-PHAFRDLGR 202 (285)
T ss_dssp CTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTT
T ss_pred CcCCCEEECCCC-cccccCH-hHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCC-cccccC-HhHccCccc
Confidence 789999999987 4442111 12345789999999998 4543 34678899999999987 343321 122356889
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
|++|++++|.++... ...+..+++|+.|++++|+...+..
T Consensus 203 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 203 LMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCCccCCCC
Confidence 999999998776432 3456779999999999998776654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-10 Score=106.75 Aligned_cols=150 Identities=18% Similarity=0.212 Sum_probs=111.7
Q ss_pred hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH
Q 007131 122 LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 122 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
..+++|++|+++++. +++ +. -...+++|++|++++ | .+++. .. ...+++|++|+++++ .+++.....+
T Consensus 41 ~~l~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~l~~--n-~~~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~~~l- 108 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTD--LT-GIEYAHNIKDLTINN--I-HATNY--NP-ISGLSNLERLRIMGK-DVTSDKIPNL- 108 (197)
T ss_dssp HHHHTCCEEEEESSC-CSC--CT-TGGGCTTCSEEEEES--C-CCSCC--GG-GTTCTTCCEEEEECT-TCBGGGSCCC-
T ss_pred hhcCCccEEeccCCC-ccC--hH-HHhcCCCCCEEEccC--C-CCCcc--hh-hhcCCCCCEEEeECC-ccCcccChhh-
Confidence 357899999999986 543 22 256689999999973 5 45432 22 344899999999998 6765444433
Q ss_pred hcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCC
Q 007131 202 KLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSK 278 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 278 (617)
..+++|++|++++| .+++ ..+..+++|++|++++|..+++-. ....+++|++|++++|.+++-. .+..++
T Consensus 109 ~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l~ 181 (197)
T 4ezg_A 109 SGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDFP 181 (197)
T ss_dssp TTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGCS
T ss_pred cCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccCC
Confidence 36799999999999 5554 567899999999999986465432 3567999999999998876532 456799
Q ss_pred CCCEEEccCCCC
Q 007131 279 SLKVLCALNCPV 290 (617)
Q Consensus 279 ~L~~L~l~~c~~ 290 (617)
+|+.|+++++++
T Consensus 182 ~L~~L~l~~N~i 193 (197)
T 4ezg_A 182 KLNQLYAFSQTI 193 (197)
T ss_dssp SCCEEEECBC--
T ss_pred CCCEEEeeCccc
Confidence 999999999874
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=109.49 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHh-cCCCCceEeecCCC--CCCHH-------HH--hcCcCCCeecccCCCCCCHHHH
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAK-LCPNLTDIGFLDCL--NVDEV-------AL--GNVLSVRFLSVAGTSNMKWGVV 245 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~-~~~~L~~L~l~~~~--~~~~~-------~l--~~~~~L~~L~l~~~~~i~~~~l 245 (617)
+++|++|.+..| .++++++..+.. .+|+|++|+|+.+. ...+. .+ ..+++|++|++++| .+++.+.
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHH
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHH
Confidence 456666666655 456555555542 35666666654210 00110 11 23566666666665 4444444
Q ss_pred HHHHh--cCCCCCeEEeccCCCCHHHHHHHH---hcCCCCCEEEccCCCCCChhHHHHHH
Q 007131 246 SQVWH--KLPKLVGLDVSRTDVGPITISRLL---TSSKSLKVLCALNCPVLEEENNISAV 300 (617)
Q Consensus 246 ~~l~~--~~~~L~~L~l~~~~~~~~~l~~~~---~~~~~L~~L~l~~c~~~~~~~~~~~~ 300 (617)
..++. .+|+|++|+++.|.+++.+...+. .++++|+.|++++|. +++.+...+.
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~ 328 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQ 328 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHH
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHH
Confidence 44432 456666666666666665544443 335666666666664 5555555444
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-11 Score=115.24 Aligned_cols=179 Identities=14% Similarity=0.098 Sum_probs=124.2
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++|+.|+++++..........+++|++|+++++. +++. . ....+++|++|++++ + .++... ......+++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~--n-~l~~~~-~~~~~~l~~L 111 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLILTG--N-QLQSLP-NGVFDKLTNL 111 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEECTT--S-CCCCCC-TTTTTTCTTC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEECCC--C-ccCccC-hhHhcCCcCC
Confidence 47899999998865432223368999999999987 5442 2 345689999999963 4 454321 1122457999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
++|+++++ .++... ......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|
T Consensus 112 ~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L 186 (272)
T 3rfs_A 112 KELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLP-EGVFDKLTQLKDL 186 (272)
T ss_dssp CEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEE
T ss_pred CEEECCCC-cCCccC-HHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccC-HHHhcCCccCCEE
Confidence 99999998 554211 112346799999999998 4443 34678999999999998 444211 2234578999999
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++++|.++... +..+..+++|+.|++++|+...+.
T Consensus 187 ~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 187 RLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp ECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ECCCCcCCccC-HHHHhCCcCCCEEEccCCCccccC
Confidence 99998776422 344567999999999999866543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.6e-09 Score=112.16 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=149.5
Q ss_pred hcChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhc
Q 007131 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWREGLQSEAAKAIANLS 456 (617)
Q Consensus 378 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~ls 456 (617)
+..+..+++.|++.+++.|..||.+|.+|+. + +..++.+...+++..++. +|.+++.+++..|+++|+||+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~-------~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-D-------AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-S-------HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-C-------cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3445567788999999999999999999973 2 334467888888877654 688889999999999999999
Q ss_pred cc--hhhHHHHHHhCCHHHHHHHHhcCC---------------------HHHHHHHHHHHHHhcCC-cchHHHHHhcCCh
Q 007131 457 VN--AKVAKAVAEEGGINILAVLARSMN---------------------RLVAEEAAGGLWNLSVG-EEHKGAIADAGGV 512 (617)
Q Consensus 457 ~~--~~~~~~i~~~~~i~~L~~lL~~~~---------------------~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i 512 (617)
.+ .+.+..++..|++++|..++++.. .++.+.++.+|++|+.. .+....+.+.+++
T Consensus 105 ~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l 184 (684)
T 4gmo_A 105 QEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTI 184 (684)
T ss_dssp HHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHH
T ss_pred hhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccH
Confidence 74 678899999999999999986411 13456788999999954 4666778889999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCH---HHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 513 KALVDLIFKWSSGGDGVLERAAGALANLAADDKC-SMEVALAGGV---HALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 513 ~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~---~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+.|+..|........+++..|+.+|..++.+... ...+.+.+.. ..+..+..+. +..+..++++|.|+..
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~--~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT--DPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS--CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC--cHHHHHHHHHHHhHhh
Confidence 9999998653445678999999999999976544 5555655542 2333333333 3557788999999853
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-08 Score=90.91 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=70.2
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHH---hcCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHH
Q 007131 123 QARNLRELSGDYCRKITDATLSVIV---ARHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDA 196 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~---~~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~ 196 (617)
.+++|++|+|++|..+++.++..+. ..+++|++|+|+ +| .+++.+...++. ..++|++|+|+++ .+++.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls--~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV--GT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT--TS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc--CC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 7899999999998459998866655 457899999996 35 799998877654 3578999999998 899988
Q ss_pred HHHHHhc---CCCCceEee--cCCCCCCHH
Q 007131 197 INALAKL---CPNLTDIGF--LDCLNVDEV 221 (617)
Q Consensus 197 l~~l~~~---~~~L~~L~l--~~~~~~~~~ 221 (617)
...++.. ++.|++|++ ++| .+++.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~ 138 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNN 138 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHH
Confidence 8777633 345555555 444 44443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-11 Score=119.92 Aligned_cols=179 Identities=17% Similarity=0.202 Sum_probs=125.1
Q ss_pred CCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
.++++.|+++++....-.. ...+++|++|+++++. ++ .+......+++|++|+|++ + .++ .+......+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~--n-~l~--~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLAR--N-PLR--ALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEES--C-CCC--CCCGGGGGCTT
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCC--C-ccc--cCcHHHhcCcC
Confidence 4789999999986652111 1258899999999986 54 2333345689999999973 3 454 22223456899
Q ss_pred CCeeeccCccCCcHHHHHHH--------HhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHh
Q 007131 181 LKKLRLSGIRDICGDAINAL--------AKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWH 250 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l--------~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~ 250 (617)
|++|++++|..++. .-..+ ...+++|++|++++| .++. ..+..+++|++|++++|. ++. +..-..
T Consensus 152 L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~--l~~~l~ 226 (328)
T 4fcg_A 152 LRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSA--LGPAIH 226 (328)
T ss_dssp CCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCC--CCGGGG
T ss_pred CCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCc--Cchhhc
Confidence 99999999743321 00011 124799999999998 4443 457889999999999983 432 222356
Q ss_pred cCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 251 KLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
.+++|++|++++|.+... ++..+..+++|+.|++++|..++..
T Consensus 227 ~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp GCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred cCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhc
Confidence 799999999999765433 2444567999999999999877654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-10 Score=121.62 Aligned_cols=170 Identities=20% Similarity=0.169 Sum_probs=110.9
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
++|+.|+++++..........+++|+.|+|++|. +++.. . ...+++|+.|+|+. | .+++ +.. ...+++|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~--N-~l~~--l~~-l~~l~~L~ 112 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLDE--N-KIKD--LSS-LKDLKKLK 112 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCG--G-GGGCTTCCEEECCS--S-CCCC--CTT-STTCTTCC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCCh--h-hccCCCCCEEECcC--C-CCCC--Chh-hccCCCCC
Confidence 5677777777654432222367888888888775 33311 1 45688888888852 3 4443 122 23478888
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+|+|+++ .++. +.. ...+++|+.|++++|..-....+..+++|++|++++| .+++.. . ...+++|++|++++
T Consensus 113 ~L~Ls~N-~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 113 SLSLEHN-GISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSK 184 (605)
T ss_dssp EEECTTS-CCCC--CGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCS
T ss_pred EEEecCC-CCCC--Ccc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCC-cCCCch--h-hccCCCCCEEECcC
Confidence 8888887 4543 222 3467888888888884333356778888888888887 343221 1 56788888888888
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
|.++.. + .+..+++|+.|++++|++...
T Consensus 185 N~i~~l--~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 185 NHISDL--R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCCCBC--G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCC--h-HHccCCCCCEEEccCCcCcCC
Confidence 877652 2 356688899999888876544
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.4e-09 Score=103.31 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=126.8
Q ss_pred HhCCCceEEEecCCCCc-----------cHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCH
Q 007131 100 SRCMNLQKLRFRGAESA-----------DSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS 168 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~ 168 (617)
..+++|+.|.+.+.... -......+|+|+.|+++++..+.- ..+ .+++|++|+|. +..+++
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~---~~~l~~ 207 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEII---SGGLPD 207 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEE---CSBCCH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEe---cCCCCh
Confidence 35689999999654221 112233789999999988743221 111 37899999996 347899
Q ss_pred HHHHHHHh-cCCCCCeeeccCccC--CcH---HHHHHHH--hcCCCCceEeecCCCCCCHHH---H---hcCcCCCeecc
Q 007131 169 DAVKAIAL-CCPKLKKLRLSGIRD--ICG---DAINALA--KLCPNLTDIGFLDCLNVDEVA---L---GNVLSVRFLSV 234 (617)
Q Consensus 169 ~~l~~l~~-~~~~L~~L~l~~~~~--i~~---~~l~~l~--~~~~~L~~L~l~~~~~~~~~~---l---~~~~~L~~L~l 234 (617)
.++..++. .+|+|++|+|+.+.. ..+ ..+..+. ..+|+|++|++.+| .+++.+ + ..+++|++|++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEEC
Confidence 99988874 589999999863211 111 1122222 34799999999998 566533 2 25789999999
Q ss_pred cCCCCCCHHHHHHHH---hcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 235 AGTSNMKWGVVSQVW---HKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 235 ~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+.| .+++.+...+. .++++|+.|++++|.+++..+..+...+ ...++++++.
T Consensus 287 s~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 886 79998887776 4589999999999999999887776644 4568888776
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-10 Score=113.02 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=16.2
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++|++++|.++.-. .+..+++|+.|++++|+
T Consensus 272 ~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSCEECCSCCCCSCC---CTTSCCCCSCEECSSTT
T ss_pred CCCCEEECCCCcCCCCc---hhhhCCCccEEECcCCC
Confidence 45555555555444210 02345555555555554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=113.06 Aligned_cols=81 Identities=17% Similarity=0.112 Sum_probs=35.9
Q ss_pred cCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+++|++|++++|..-+...+..+++|++|++++| .+++... ...+++|+.|++++|.++.. ..+..+++|+.
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~ 357 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINW 357 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCE
T ss_pred CCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCE
Confidence 34455555555542211122444555555555554 2221110 23455555555555544332 12334555555
Q ss_pred EEccCCCC
Q 007131 283 LCALNCPV 290 (617)
Q Consensus 283 L~l~~c~~ 290 (617)
|++++|.+
T Consensus 358 L~l~~n~l 365 (466)
T 1o6v_A 358 LSAGHNQI 365 (466)
T ss_dssp EECCSSCC
T ss_pred EeCCCCcc
Confidence 55555544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.5e-10 Score=117.78 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=110.9
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCH-HHHHHHHhcCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS-DAVKAIALCCPKL 181 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~-~~l~~l~~~~~~L 181 (617)
++++.|+++++..........+++|++|+++++. +++... .....+++|+.|+++ ++ .+++ ..+......+++|
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~--~N-~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVF-ENCGHLTELETLILQ--MN-QLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTT-TTCCCCSSCCEEECC--SS-CCCBHHHHHHHHTTCTTC
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCc-cChhhh-hhhccCCCCCEEEcc--CC-ccCccccchHHHhhCCCC
Confidence 4577777776654332211356788888888776 443211 122457788888885 34 4553 2233334557888
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcC-cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
++|+++++ .++...-......+++|++|++++| .++......+ ++|++|++++| .++ .+..-...+++|++|++
T Consensus 377 ~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~L~~L~Ls~N-~l~--~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 377 QQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSN-KIK--SIPKQVVKLEALQELNV 451 (520)
T ss_dssp CEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCCTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEEC
T ss_pred CEEECCCC-cCCcccccchhccCccCCEEECcCC-CCCcchhhhhcccCCEEECCCC-ccc--ccchhhhcCCCCCEEEC
Confidence 88888877 4443111112335678888888887 4655444444 58888888887 444 22222236788888888
Q ss_pred ccCCCCHHHHHH-HHhcCCCCCEEEccCCCCCChhHH
Q 007131 261 SRTDVGPITISR-LLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 261 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
++|.++. ++. .+..+++|+.|++++|+...+...
T Consensus 452 ~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 452 ASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CSSCCCC--CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCcCCc--cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8877652 222 355678888888888887766653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-08 Score=90.67 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=126.4
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
++.|++++.++++.++..|+.+|..+. ..++++.|+++|.++++.++..|+.+|..+..
T Consensus 52 ~~~L~~~l~~~~~~vr~~a~~aL~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--- 110 (211)
T 3ltm_A 52 VEPLIKALKDEDAWVRRAAADALGQIG------------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--- 110 (211)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhC------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---
Confidence 388899999999999999999998752 23467899999999999999999999998753
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.+.++.|+++|.++++.++..|+.+|.++.. ...++.|..++. +.++.++..|+.+|..+
T Consensus 111 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 111 -------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEI 170 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999853 247888999994 57889999999999998
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD 587 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~ 587 (617)
.. ..+++.|..++.+++ +.++..|..+|.++...+.
T Consensus 171 ~~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 171 GG----------ERVRAAMEKLAETGT-GFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CS----------HHHHHHHHHHHHHCC-HHHHHHHHHHHHC------
T ss_pred Cc----------hhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCC
Confidence 42 345678888888875 8999999999999986443
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=117.29 Aligned_cols=160 Identities=18% Similarity=0.042 Sum_probs=129.5
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHH-HHHHhcCCHHHHHHHHHHHHHhcCC--cchH
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINIL-AVLARSMNRLVAEEAAGGLWNLSVG--EEHK 503 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L-~~lL~~~~~~~~~~a~~~L~nL~~~--~~~~ 503 (617)
...+.++++.|++++++.|..||.+|.+|+.++..+..+...|+|..+ ..+|.+++.+++++|+++|.||+.. .+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 345667788899999999999999999999999999999999998765 4568889999999999999999954 4788
Q ss_pred HHHHhcCChHHHHHHHhhc-----C-C-----C-------CHHHHHHHHHHHHHhccCCC-chHHHHHhCCHHHHHHHHh
Q 007131 504 GAIADAGGVKALVDLIFKW-----S-S-----G-------GDGVLERAAGALANLAADDK-CSMEVALAGGVHALVMLAR 564 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~-----~-~-----~-------~~~~~~~a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~ 564 (617)
..+.+.|++++|..++... . . . -..+..+++.+|++||...+ ....+.+.++++.|+.++.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 9999999999999988540 0 0 0 02355678899999996554 4567778888999998774
Q ss_pred cC--CchhHHHHHHHHHHHHhccC
Q 007131 565 SC--KFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 565 ~~--~~~~~~~~a~~~L~~l~~~~ 586 (617)
+. ...+++..|+.+|..++.++
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCcHHHHHHHHHHHHHHhccC
Confidence 32 23689999999999998753
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-11 Score=120.36 Aligned_cols=184 Identities=15% Similarity=0.097 Sum_probs=94.9
Q ss_pred CCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++|++|+++++....... ...+++|++|+++++. ++..........+++|+.|+++ ++ .++... ......+++
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~--~n-~l~~~~-~~~~~~l~~ 151 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDIS--HT-HTRVAF-NGIFNGLSS 151 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECT--TS-CCEECS-TTTTTTCTT
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECC--CC-cCCccc-hhhcccCcC
Confidence 4666777766664332100 1146667777776654 2221111123446677777774 23 232111 111233567
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++...+......+++|++|++++| .++. ..+..+++|++|++++|. ++... ......+++|++
T Consensus 152 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~ 227 (306)
T 2z66_A 152 LEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD-TFPYKCLNSLQV 227 (306)
T ss_dssp CCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCC-SGGGTTCTTCCE
T ss_pred CCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccC-hhhccCcccCCE
Confidence 777777766 4433112222345567777777776 3433 345666777777777763 32111 011245677777
Q ss_pred EEeccCCCCHHHHHHHHhcC-CCCCEEEccCCCCCChhH
Q 007131 258 LDVSRTDVGPITISRLLTSS-KSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~~~~~~ 295 (617)
|++++|.++... +..+..+ ++|++|++++|+...+..
T Consensus 228 L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 228 LDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp EECTTSCCCBCS-SSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred eECCCCCCcccC-HHHHHhhhccCCEEEccCCCeecccC
Confidence 777776654332 1222334 377777777777655543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-11 Score=120.37 Aligned_cols=181 Identities=15% Similarity=0.129 Sum_probs=101.5
Q ss_pred HhCCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHH
Q 007131 100 SRCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIA 175 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~ 175 (617)
..+++|++|+++++..... .....+++|++|+++++. ++. +......+++|++|++++ + .++........
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~--l~~~~~~l~~L~~L~l~~--n-~l~~~~~~~~~ 122 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT--MSSNFLGLEQLEHLDFQH--S-NLKQMSEFSVF 122 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEE--EEEEEETCTTCCEEECTT--S-EEESSTTTTTT
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-ccc--ChhhcCCCCCCCEEECCC--C-cccccccchhh
Confidence 3456777777777654421 222356777777777765 221 111133567777777752 2 23221111122
Q ss_pred hcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHHHHHHhc
Q 007131 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHK 251 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~ 251 (617)
..+++|++|+++++ .++... ......+++|++|++++| .+++ ..+..+++|++|++++| .++... ......
T Consensus 123 ~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~ 197 (306)
T 2z66_A 123 LSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNS 197 (306)
T ss_dssp TTCTTCCEEECTTS-CCEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTT
T ss_pred hhccCCCEEECCCC-cCCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcC-HHHhcC
Confidence 34677888888776 333211 112335677888888777 3432 34566778888888776 343211 112345
Q ss_pred CCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 252 LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+++|++|++++|.++... ...+..+++|+.|++++|.+.+
T Consensus 198 l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCCcc
Confidence 778888888887654321 1123567788888888776544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5e-09 Score=109.59 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=47.6
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
+++|++|+++++ .++.. .. ...+++|++|++++|.......+..+++|++|++++|. +++. .. ...+++|+.
T Consensus 242 l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~ 313 (466)
T 1o6v_A 242 LTNLTDLDLANN-QISNL--AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDI--SP-ISNLKNLTY 313 (466)
T ss_dssp CTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCC--GG-GGGCTTCSE
T ss_pred CCCCCEEECCCC-ccccc--hh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCc--hh-hcCCCCCCE
Confidence 455555555554 22211 01 23445555555555522222234455555555555542 2211 11 344566666
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|.+++... +..+++|+.|++++|...+
T Consensus 314 L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 314 LTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp EECCSSCCSCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred EECcCCcCCCchh---hccCccCCEeECCCCccCC
Confidence 6666655433211 3455666666666665433
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-10 Score=114.15 Aligned_cols=181 Identities=15% Similarity=0.137 Sum_probs=113.1
Q ss_pred hCCCceEEEecCCCCccHHHH----hcCCCccEEeccCCCCCCHH--HHHHHHh-cCCCcceEEEcCCCCCCCCHHHHHH
Q 007131 101 RCMNLQKLRFRGAESADSIIH----LQARNLRELSGDYCRKITDA--TLSVIVA-RHEALESLQLGPDFCERITSDAVKA 173 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~l~~i~~-~~~~L~~L~l~~~~~~~i~~~~l~~ 173 (617)
.+++|++|+++++......+. ..+++|++|+++++. ++.. .+..+.. .+++|++|++++ + .++......
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~--N-~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQ--A-HSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEES--C-SCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeC--C-CCccchHHH
Confidence 367899999988865532221 367899999998876 4332 2222221 137899999963 3 443321112
Q ss_pred HHhcCCCCCeeeccCccCCcH-HHHH-HH-HhcCCCCceEeecCCCCCCH------HHHhcCcCCCeecccCCCCCCHHH
Q 007131 174 IALCCPKLKKLRLSGIRDICG-DAIN-AL-AKLCPNLTDIGFLDCLNVDE------VALGNVLSVRFLSVAGTSNMKWGV 244 (617)
Q Consensus 174 l~~~~~~L~~L~l~~~~~i~~-~~l~-~l-~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~~~~i~~~~ 244 (617)
+ ..+++|++|+++++ .+.. ..+. .+ ...+++|++|++++| .++. ..+..+++|++|++++| .++...
T Consensus 169 ~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 244 (312)
T 1wwl_A 169 V-RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAA 244 (312)
T ss_dssp C-CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSC
T ss_pred h-ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCccc
Confidence 2 34788999999988 4433 2222 22 156789999999998 4552 12357789999999887 343321
Q ss_pred HHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 245 VSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 245 l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
.......+++|++|++++|.++ .++..+ .++|++|++++|.+.+.
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~--~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS--SCCSSC--CSEEEEEECCSSCCCSC
T ss_pred chhhhhhcCCCCEEECCCCccC--hhhhhc--cCCceEEECCCCCCCCC
Confidence 0112234688999999998776 222222 16899999998876543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=95.11 Aligned_cols=106 Identities=16% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHH
Q 007131 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEV 550 (617)
Q Consensus 471 i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 550 (617)
++.|+.+|.++++.++..|+.+|.++.. .++++.|+.++. +.+..++..|+++|..+....
T Consensus 130 ~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~------ 190 (280)
T 1oyz_A 130 VEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLK---DPNGDVRNWAAFAININKYDN------ 190 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCC------
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCc------
Confidence 4555555555666666666666655532 246777777774 466677777887777764221
Q ss_pred HHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 551 ALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 551 ~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
...++.|+.++.+++ ..++..|+.+|.++. +...++.|+.+++++
T Consensus 191 --~~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~--------------~~~~~~~L~~~l~d~ 235 (280)
T 1oyz_A 191 --SDIRDCFVEMLQDKN-EEVRIEAIIGLSYRK--------------DKRVLSVLCDELKKN 235 (280)
T ss_dssp --HHHHHHHHHHTTCSC-HHHHHHHHHHHHHTT--------------CGGGHHHHHHHHTSS
T ss_pred --HHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC--------------CHhhHHHHHHHhcCc
Confidence 134566777777664 788888888888774 234678888888764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-10 Score=113.78 Aligned_cols=194 Identities=13% Similarity=0.085 Sum_probs=91.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~ 160 (617)
+.++++...+..-.. .....+++|++|+++++..........+++|++|+++++. ++.. ..+++|+.|++++
T Consensus 37 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l------~~~~~L~~L~l~~ 108 (317)
T 3o53_A 37 KELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQEL------LVGPSIETLHAAN 108 (317)
T ss_dssp SEEECTTSCCCCCCH-HHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EEEE------EECTTCCEEECCS
T ss_pred CEEECcCCccCcCCH-HHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-cccc------cCCCCcCEEECCC
Confidence 555665544433211 1224456777777777655432222356677777776664 2210 0123444444421
Q ss_pred -------------------CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-
Q 007131 161 -------------------DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE- 220 (617)
Q Consensus 161 -------------------~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~- 220 (617)
+++ .++...-. ....+++|++|+++++ .++......+...+++|++|++++|. ++.
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSS-CCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred CccCCcCccccCCCCEEECCCC-CCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 011 22211000 0122455555555555 33332222233344566666666652 332
Q ss_pred HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 221 VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
.....+++|++|++++| .++.- ..-...+++|++|++++|.++. ++..+..+++|+.|++++|+..
T Consensus 185 ~~~~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSN-KLAFM--GPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECCCCCTTCCEEECCSS-CCCEE--CGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred ccccccccCCEEECCCC-cCCcc--hhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence 22234566666666665 33211 1113456667777777766552 2333455667777777777654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-10 Score=113.34 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=124.4
Q ss_pred CCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 102 CMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
.+++++|+++++....... ...+++|++|+++++. ++... ......+++|++|+++ ++..++...... ...++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~--~n~~l~~~~~~~-~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARID-AAAFTGLALLEQLDLS--DNAQLRSVDPAT-FHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC--SCTTCCCCCTTT-TTTCT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeC-HhhcCCccCCCEEeCC--CCCCccccCHHH-hcCCc
Confidence 3689999999987654221 2368999999999885 44321 1233468999999996 343243321111 23479
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+|++|+++++ .++... ......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|+
T Consensus 106 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~ 180 (285)
T 1ozn_A 106 RLHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLHSLD 180 (285)
T ss_dssp TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCC
T ss_pred CCCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccC-HHHhcCccccC
Confidence 9999999998 454311 1223467999999999984 443 44788999999999997 444211 11235689999
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+|++++|.++... +..+..+++|+.|++++|.+...
T Consensus 181 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 181 RLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp EEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCC
T ss_pred EEECCCCcccccC-HhHccCcccccEeeCCCCcCCcC
Confidence 9999998876432 34456789999999999976543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-08 Score=88.78 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=126.7
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
++.+++++.++++.++..|+.+|..+. ..++++.|+++|.++++.++..|+.+|..+..
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 105 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIG------------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--- 105 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhC------------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---
Confidence 388899999999999999999998652 22467899999999999999999999998743
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
..+++.|+.+|.++++.++..|+.+|.++.. .+.++.|+.++. +.++.++..|+.+|..+
T Consensus 106 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 106 -------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEI 165 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 2468889999999999999999999999853 357889999994 57889999999999998
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
.. ..+++.|..++.+++ +.++..|..+|..+.
T Consensus 166 ~~----------~~~~~~L~~~l~d~~-~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 166 GG----------ERVRAAMEKLAETGT-GFARKVAVNYLETHK 197 (201)
T ss_dssp CS----------HHHHHHHHHHHHHCC-HHHHHHHHHHHHHCC
T ss_pred Cc----------hhHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 32 235678888888875 899999999999874
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-10 Score=112.00 Aligned_cols=182 Identities=15% Similarity=0.077 Sum_probs=94.1
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++....... ...+++|++|+++++. ++.. .......+++|++|++++ + .++..........+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~--n-~l~~l~~~~~~~~l 148 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNL-SSSWFKPLSSLTFLNLLG--N-PYKTLGETSLFSHL 148 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSC-CHHHHTTCTTCSEEECTT--C-CCSSSCSSCSCTTC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcC-CHhHhCCCccCCEEECCC--C-CCcccCchhhhccC
Confidence 45667777777665443211 1245677777777664 3321 112234567777777742 2 33321000112346
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++..++.-. ......+++|++|++++|. ++. ..+..+++|++|++++|. ++... ..+...+++|
T Consensus 149 ~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L 224 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSV 224 (353)
T ss_dssp TTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTE
T ss_pred CCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccch-hhhhhhcccc
Confidence 677777777653222110 0112345667777777662 332 345566677777776653 32211 2233446666
Q ss_pred CeEEeccCCCCH---------------------------H---HHHHHHhcCCCCCEEEccCCCCC
Q 007131 256 VGLDVSRTDVGP---------------------------I---TISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 256 ~~L~l~~~~~~~---------------------------~---~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+.|++++|.++. . .++..+..+++|+.|++++|.+.
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 666666654332 1 23445566777777777777544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-09 Score=114.32 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=35.3
Q ss_pred CCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 206 NLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 206 ~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
+|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.++... +..+.++++|++
T Consensus 276 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 351 (455)
T 3v47_A 276 GVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQN-EINKID-DNAFWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEV 351 (455)
T ss_dssp CCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCE
T ss_pred CceEEEecCc-cccccchhhcccCCCCCEEECCCC-cccccC-hhHhcCcccCCEEECCCCccCCcC-hhHhcCcccCCE
Confidence 4444555444 2221 22344555555555554 222110 111234455555555555443221 222344555555
Q ss_pred EEccCCCC
Q 007131 283 LCALNCPV 290 (617)
Q Consensus 283 L~l~~c~~ 290 (617)
|++++|.+
T Consensus 352 L~Ls~N~l 359 (455)
T 3v47_A 352 LDLSYNHI 359 (455)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 55555543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-09 Score=115.13 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=42.9
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
++|++|++++| .++.. ...+++|++|++++| .++ .+.. ...+++|+.|++++|.++... +..+..+++|+.|+
T Consensus 431 ~~L~~L~Ls~N-~l~~~-~~~l~~L~~L~Ls~N-~l~--~ip~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 431 QTLEVLDVSNN-NLDSF-SLFLPRLQELYISRN-KLK--TLPD-ASLFPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIW 503 (549)
T ss_dssp TTCSEEECCSS-CCSCC-CCCCTTCCEEECCSS-CCS--SCCC-GGGCTTCCEEECCSSCCCCCC-TTGGGGCTTCCEEE
T ss_pred CCceEEECCCC-Chhhh-cccCChhcEEECCCC-ccC--cCCC-cccCccCCEEecCCCccCCcC-HHHHhcCcccCEEE
Confidence 35555555555 23221 135566666666665 332 1111 134666677777666554321 22344566777777
Q ss_pred ccCCCCCChh
Q 007131 285 ALNCPVLEEE 294 (617)
Q Consensus 285 l~~c~~~~~~ 294 (617)
+++|+...+.
T Consensus 504 l~~N~~~~~~ 513 (549)
T 2z81_A 504 LHTNPWDCSC 513 (549)
T ss_dssp CCSSCBCCCH
T ss_pred ecCCCccCCC
Confidence 7776655444
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-10 Score=118.87 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=54.5
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.. .......+++|++|++++| .+++ ..+..+++|++|++++| .++... ......+++|
T Consensus 275 ~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLSKS-KIFAL-LKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSID-SRMFENLDKL 349 (455)
T ss_dssp SCCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC-GGGGTTCTTC
T ss_pred cCceEEEecCc-ccccc-chhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcC-hhHhcCcccC
Confidence 46666666665 33321 1112234566777777666 3333 24556666666666665 232111 1122445666
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++++|.++... +..+..+++|++|++++|.+.
T Consensus 350 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 350 EVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp CEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcccccC-hhhccccccccEEECCCCccc
Confidence 66666666553321 222344666666666666543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-10 Score=110.37 Aligned_cols=200 Identities=15% Similarity=0.103 Sum_probs=129.8
Q ss_pred cccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceE
Q 007131 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESL 156 (617)
Q Consensus 79 ~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L 156 (617)
.|+.+++++..++. +.. ...+++++|+++++....... ...+++|++|+++++. ++.. ...+...+++|++|
T Consensus 17 ~~~~l~~~~~~l~~-ip~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPS---NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSS-CCS---CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCc-cCC---CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEE
Confidence 35667666544432 110 122579999999986543221 2267999999999886 4321 11233568999999
Q ss_pred EEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeec
Q 007131 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLS 233 (617)
Q Consensus 157 ~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~ 233 (617)
+++. + .++.... .....+++|++|+++++ .++.-.. .....+++|++|++++|. ++. ..+..+++|++|+
T Consensus 91 ~l~~--n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 91 WVTD--N-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPP-RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp ECCS--S-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ECCC--C-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCH-HHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeE
Confidence 9963 3 4442111 12245789999999988 4443111 123467999999999983 443 3467899999999
Q ss_pred ccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 234 VAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 234 l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+++| .++... ......+++|++|++++|.++... ...+..+++|+.|++++|+..-+.
T Consensus 164 L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 164 LYNN-QLKRVP-EGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCSS-CCSCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ecCC-cCcEeC-hhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCeeCCC
Confidence 9997 333211 112356899999999998765321 234567899999999999865443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-10 Score=114.76 Aligned_cols=185 Identities=14% Similarity=0.077 Sum_probs=99.0
Q ss_pred hCCCceEEEecCCCCccHHH---HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 101 RCMNLQKLRFRGAESADSII---HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
.+++|++|+++++....... ...+++|++|+++++..++... ......+++|++|++++ + .++...... ...
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-l~~ 196 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDA--S-DLQSYEPKS-LKS 196 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEE--T-TCCEECTTT-TTT
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCC--C-CcCccCHHH-Hhc
Confidence 34555555555543321110 1134555555555543222110 01122355556666542 2 222211111 123
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHH------HHhcCcCCCeecccCCCCCCHHHHHHH---
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV------ALGNVLSVRFLSVAGTSNMKWGVVSQV--- 248 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~------~l~~~~~L~~L~l~~~~~i~~~~l~~l--- 248 (617)
+++|++|+++++ .++.-. ..+...+++|++|++++| .++.. ....+..++.++++++ .+++..+..+
T Consensus 197 l~~L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~ 272 (353)
T 2z80_A 197 IQNVSHLILHMK-QHILLL-EIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKL 272 (353)
T ss_dssp CSEEEEEEEECS-CSTTHH-HHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHH
T ss_pred cccCCeecCCCC-ccccch-hhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccc-cccCcchhhhHHH
Confidence 566666666666 343221 223334577777777776 33331 1234566777777765 5666655444
Q ss_pred HhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 249 WHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
...+++|+.|++++|.++.-. ..++..+++|++|++++|+...+..
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcccCCCEEECCCCCCCccC-HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 467999999999999876211 2334679999999999999887763
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.7e-11 Score=123.74 Aligned_cols=107 Identities=10% Similarity=0.083 Sum_probs=60.5
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+++|++|+++++ .++......+...+++|++|++++|. ++. .....+++|++|++++| .++.. ..-...+++|+
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~~L~ 217 (487)
T 3oja_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFM--GPEFQSAAGVT 217 (487)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEE--CGGGGGGTTCS
T ss_pred CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCC-CCCCC--CHhHcCCCCcc
Confidence 566666666666 44432223333345667777777663 333 23344667777777776 33321 11134567777
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
.|++++|.++. ++..+..+++|+.|++++|+..
T Consensus 218 ~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 218 WISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred EEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 77777776653 3333455677777777777654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-10 Score=129.49 Aligned_cols=104 Identities=24% Similarity=0.288 Sum_probs=46.9
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
.+++|++|+++++ .++.. ... ..+++|++|++++|...+. ..+..+++|++|++++| .++.. +......+++|
T Consensus 176 ~l~~L~~L~Ls~n-~l~~~--~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L 249 (768)
T 3rgz_A 176 GCGELKHLAISGN-KISGD--VDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGD-FSRAISTCTEL 249 (768)
T ss_dssp CCTTCCEEECCSS-EEESC--CBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSC-HHHHTTTCSSC
T ss_pred cCCCCCEEECCCC-ccccc--CCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCc-ccHHHhcCCCC
Confidence 3555555555555 22210 000 2445566666655532111 12455566666666555 23221 12223455666
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++++|.++... +.. .+++|++|++++|.
T Consensus 250 ~~L~Ls~n~l~~~~-~~~--~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 250 KLLNISSNQFVGPI-PPL--PLKSLQYLSLAENK 280 (768)
T ss_dssp CEEECCSSCCEESC-CCC--CCTTCCEEECCSSE
T ss_pred CEEECCCCcccCcc-Ccc--ccCCCCEEECcCCc
Confidence 66666665432111 111 45566666666554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-09 Score=111.90 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=132.2
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~ 160 (617)
+.++++...+..- .. ...+++|++|+++++..... ....+++|++|+++++. ++... ...+++|++|++++
T Consensus 45 ~~L~Ls~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 45 TSLDCHNSSITDM--TG-IEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLNCDT 115 (457)
T ss_dssp CEEECCSSCCCCC--TT-GGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECCS
T ss_pred CEEEccCCCcccC--hh-hcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCC-Cceee----cCCCCcCCEEECCC
Confidence 5666666554431 12 35678999999998865542 23367899999999986 44422 45689999999963
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCC
Q 007131 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240 (617)
Q Consensus 161 ~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i 240 (617)
+ .++.. . ...+++|++|+++++ .++.- . ...+++|++|++++|..++...+..+++|++|++++| .+
T Consensus 116 --N-~l~~l--~--~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l 182 (457)
T 3bz5_A 116 --N-KLTKL--D--VSQNPLLTYLNCARN-TLTEI---D-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KI 182 (457)
T ss_dssp --S-CCSCC--C--CTTCTTCCEEECTTS-CCSCC---C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CC
T ss_pred --C-cCCee--c--CCCCCcCCEEECCCC-cccee---c-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-cc
Confidence 4 45442 1 345789999999988 55542 1 3467899999999997676666788999999999997 44
Q ss_pred CHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 241 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+.- . ...+++|+.|++++|.++... +..+++|+.|++++|.+.+
T Consensus 183 ~~l--~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 183 TEL--D--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CCC--C--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC
T ss_pred cee--c--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccc
Confidence 432 1 467899999999998776542 5678999999999998655
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-10 Score=118.00 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.7
Q ss_pred CCCceEEEecCC
Q 007131 102 CMNLQKLRFRGA 113 (617)
Q Consensus 102 ~~~L~~L~l~~~ 113 (617)
+++|++|+|+++
T Consensus 98 l~~L~~L~Ls~n 109 (452)
T 3zyi_A 98 LHHLEVLQLGRN 109 (452)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 344455555444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=106.89 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=91.4
Q ss_pred CCCceEEEecCCCCcc--HHHHhcCCCccEEeccCCCCCCHHHHHHH--HhcCCCcceEEEcCCCCCCCCHHH-HHHHHh
Q 007131 102 CMNLQKLRFRGAESAD--SIIHLQARNLRELSGDYCRKITDATLSVI--VARHEALESLQLGPDFCERITSDA-VKAIAL 176 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~l~~i--~~~~~~L~~L~l~~~~~~~i~~~~-l~~l~~ 176 (617)
.++|+.|+++++.... ......+++|++|+++++. +++...... ...+++|+.|+++ +| .++... ......
T Consensus 309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~~~~ 384 (549)
T 2z81_A 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLS--QN-HLRSMQKTGEILL 384 (549)
T ss_dssp STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECT--TS-CCCCHHHHHHHGG
T ss_pred cccceEEEeccCccccCCHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEcc--CC-cccccccchhhhh
Confidence 4556666666654331 1111246667777776665 544332211 2346667777774 23 443322 112234
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
.+++|++|+++++ .++. +......+++|++|++++|. ++...-...++|++|++++| .++. +...+++|+
T Consensus 385 ~l~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~-----~~~~l~~L~ 454 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDS-----FSLFLPRLQ 454 (549)
T ss_dssp GCTTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSC-----CCCCCTTCC
T ss_pred cCCCCCEEECCCC-CCcc--CChhhcccccccEEECCCCC-cccccchhcCCceEEECCCC-Chhh-----hcccCChhc
Confidence 4666777777666 4431 21122345666777776663 33211111256777777776 3332 124677777
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|++++|.++ .++. ...+++|+.|++++|...+
T Consensus 455 ~L~Ls~N~l~--~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 455 ELYISRNKLK--TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp EEECCSSCCS--SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred EEECCCCccC--cCCC-cccCccCCEEecCCCccCC
Confidence 7877777665 2332 2347777888887776543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.1e-09 Score=101.65 Aligned_cols=180 Identities=19% Similarity=0.183 Sum_probs=116.1
Q ss_pred CCceEEEecCCCCccHHH-----HhcCCCccEEeccCCCCCCHHHHHHHH-hcCCCcceEEEcCCCCCCCCHH----HHH
Q 007131 103 MNLQKLRFRGAESADSII-----HLQARNLRELSGDYCRKITDATLSVIV-ARHEALESLQLGPDFCERITSD----AVK 172 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~l~~i~-~~~~~L~~L~l~~~~~~~i~~~----~l~ 172 (617)
..++.+.+.++....... ...+++|++|+++++. ++......+. ..+++|++|++++ + .++.. ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~--n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRN--V-SWATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEES--C-CCSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeec--c-cccchhhhhHHH
Confidence 457889998887654322 1255779999999886 3322111121 5678999999963 3 45431 111
Q ss_pred HHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH------hcCcCCCeecccCCCCCC--HHH
Q 007131 173 AIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL------GNVLSVRFLSVAGTSNMK--WGV 244 (617)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l------~~~~~L~~L~l~~~~~i~--~~~ 244 (617)
.+. .+++|++|+++++ .++.... .....+++|++|++++|...++.++ ..+++|++|++++| .++ ...
T Consensus 140 ~~~-~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 215 (310)
T 4glp_A 140 QQW-LKPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGV 215 (310)
T ss_dssp HTT-BCSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHH
T ss_pred Hhh-hccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHH
Confidence 222 5889999999988 4533111 1224678999999999954443333 56789999999998 454 222
Q ss_pred HHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcC---CCCCEEEccCCCCC
Q 007131 245 VSQVWHKLPKLVGLDVSRTDVGPITISRLLTSS---KSLKVLCALNCPVL 291 (617)
Q Consensus 245 l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~---~~L~~L~l~~c~~~ 291 (617)
...+...+++|++|++++|.++... +..+..+ ++|++|++++|.+.
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCCCC
Confidence 3345578899999999998765432 1112233 79999999988755
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-10 Score=116.95 Aligned_cols=203 Identities=17% Similarity=0.093 Sum_probs=136.0
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
+.++++...+..- .......+++|++|+|+++....... ...+++|++|+++++. ++.. .......+++|+.|++
T Consensus 102 ~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 102 EVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESI-PSYAFNRVPSLMRLDL 178 (452)
T ss_dssp CEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEE-CTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-ccee-CHhHHhcCCcccEEeC
Confidence 5556655544321 11123356899999999986553221 2258899999999986 4421 1123456899999999
Q ss_pred cCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeeccc
Q 007131 159 GPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVA 235 (617)
Q Consensus 159 ~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~ 235 (617)
+ .|..++..... ....+++|++|+++++ .++. +.. ...+++|++|++++| .++. ..+..+++|++|+++
T Consensus 179 ~--~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 179 G--ELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKD--MPN-LTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp C--CCTTCCEECTT-TTTTCTTCCEEECTTS-CCSS--CCC-CTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECT
T ss_pred C--CCCCccccChh-hccCCCCCCEEECCCC-cccc--ccc-ccccccccEEECcCC-cCcccCcccccCccCCCEEEeC
Confidence 6 45555432111 1235799999999998 5543 122 346789999999998 4443 568899999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 236 GTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 236 ~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
+| .++... .....++++|+.|++++|.++... ...+..+++|+.|++++|+..-+....
T Consensus 251 ~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 251 NS-QVSLIE-RNAFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TS-CCCEEC-TTTTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CC-cCceEC-HHHhcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCCcCCCCCch
Confidence 97 443221 122457899999999998776322 334567899999999999876665433
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-10 Score=117.37 Aligned_cols=87 Identities=10% Similarity=0.164 Sum_probs=40.7
Q ss_pred CCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCC
Q 007131 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 280 (617)
+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.++... ...+..+++|
T Consensus 206 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 281 (440)
T 3zyj_A 206 LIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE-RNAFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHL 281 (440)
T ss_dssp CSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC-TTSSTTCTTCCEEECTTSCCCCCC-TTTTSSCTTC
T ss_pred CcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEC-hhhhcCCCCCCEEECCCCCCCccC-hhHhccccCC
Confidence 445555555555 2332 23445555555555554 222111 111234556666666665544221 2233445666
Q ss_pred CEEEccCCCCCChh
Q 007131 281 KVLCALNCPVLEEE 294 (617)
Q Consensus 281 ~~L~l~~c~~~~~~ 294 (617)
+.|++++|+..-+.
T Consensus 282 ~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 282 ERIHLHHNPWNCNC 295 (440)
T ss_dssp CEEECCSSCEECSS
T ss_pred CEEEcCCCCccCCC
Confidence 66666666544333
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-10 Score=118.09 Aligned_cols=181 Identities=16% Similarity=0.093 Sum_probs=95.8
Q ss_pred hCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+|+++...... ....+++|++|+|+++. ++... ......+++|++|+|++ + .++.... .....+
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--N-~i~~~~~-~~~~~l 159 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIP-NGAFVYLSKLKELWLRN--N-PIESIPS-YAFNRI 159 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCC-TTTSCSCSSCCEEECCS--C-CCCEECT-TTTTTC
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeC-HhHhhccccCceeeCCC--C-cccccCH-HHhhhC
Confidence 3466667776666443211 11245667777776654 33210 11223466677777742 2 3332110 112235
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
++|++|+++++..++.-.. .....+++|++|++++|. ++. ..+..+++|++|++++| .++... .....++++|+.
T Consensus 160 ~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~ 235 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGN-HLSAIR-PGSFQGLMHLQK 235 (440)
T ss_dssp TTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTS-CCCEEC-TTTTTTCTTCCE
T ss_pred cccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCc-CccccccCCCcccCEEECCCC-ccCccC-hhhhccCccCCE
Confidence 6777777776543322110 122345777777777763 332 34566677777777776 343211 122345777888
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|.++... +..+..+++|+.|++++|.+..
T Consensus 236 L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 236 LWMIQSQIQVIE-RNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp EECTTCCCCEEC-TTSSTTCTTCCEEECTTSCCCC
T ss_pred EECCCCceeEEC-hhhhcCCCCCCEEECCCCCCCc
Confidence 888777654332 2334567788888888776543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-10 Score=108.93 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=118.2
Q ss_pred HHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
...+++|++|+++++..........+++|++|+++++. ++.. .......+++|++|++++ + .++... ......+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~--n-~l~~~~-~~~~~~l 132 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ-LQSL-PNGVFDKLTNLKELVLVE--N-QLQSLP-DGVFDKL 132 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECTT--S-CCCCCC-TTTTTTC
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCcc-ChhHhcCCcCCCEEECCC--C-cCCccC-HHHhccC
Confidence 34679999999999876653223378999999999986 4421 112235689999999963 4 454211 1122457
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 133 ~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 207 (272)
T 3rfs_A 133 TNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSL 207 (272)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTC
T ss_pred CCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccC-HHHHhCCcCC
Confidence 99999999998 554211 122346799999999998 4443 34678999999999998 343211 2234678999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++++|.+. ..|++|+.++++.+.
T Consensus 208 ~~L~l~~N~~~--------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 208 QYIWLHDNPWD--------CTCPGIRYLSEWINK 233 (272)
T ss_dssp CEEECCSSCBC--------CCTTTTHHHHHHHHH
T ss_pred CEEEccCCCcc--------ccCcHHHHHHHHHHh
Confidence 99999998754 236777777766554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.3e-10 Score=119.30 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=100.5
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
+.++++...+..- .......+++|++|+|++|....... ...+++|++|+++++. ++.. .......+++|+.|++
T Consensus 102 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 102 QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERI-EDDTFQATTSLQNLQL 178 (597)
T ss_dssp CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBC-CTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCC-ChhhhhcCCcCcEEEC
Confidence 5555555443321 11222445778888888775543211 1256788888888775 3321 1112345778888888
Q ss_pred cCCCCCCCCHHHHHHHHhcCCC----------------------------------------CCeeeccCccCCcHHHHH
Q 007131 159 GPDFCERITSDAVKAIALCCPK----------------------------------------LKKLRLSGIRDICGDAIN 198 (617)
Q Consensus 159 ~~~~~~~i~~~~l~~l~~~~~~----------------------------------------L~~L~l~~~~~i~~~~l~ 198 (617)
++ + .++...+ ..+++ |+.|+++++ .+++.
T Consensus 179 ~~--N-~l~~~~~----~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n-~l~~~--- 247 (597)
T 3oja_B 179 SS--N-RLTHVDL----SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN-NLTDT--- 247 (597)
T ss_dssp TT--S-CCSBCCG----GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS-CCCCC---
T ss_pred cC--C-CCCCcCh----hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC-CCCCC---
Confidence 52 3 3332211 11233 333333333 22221
Q ss_pred HHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHh
Q 007131 199 ALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLT 275 (617)
Q Consensus 199 ~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~ 275 (617)
.....+++|++|++++| .++. ..+..+++|++|++++| .++. +......+|+|+.|++++|.++. ++..+.
T Consensus 248 ~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~ 321 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQP 321 (597)
T ss_dssp GGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHH
T ss_pred hhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCCCCc--cCcccc
Confidence 11234567777777766 3332 34566677777777765 3322 11112346777777777776552 233334
Q ss_pred cCCCCCEEEccCCCCCC
Q 007131 276 SSKSLKVLCALNCPVLE 292 (617)
Q Consensus 276 ~~~~L~~L~l~~c~~~~ 292 (617)
.+++|+.|++++|.+.+
T Consensus 322 ~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVT 338 (597)
T ss_dssp HHTTCSEEECCSSCCCC
T ss_pred cCCCCCEEECCCCCCCC
Confidence 56777777777776543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-10 Score=108.14 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=84.3
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
.+++|++|+++++. +++. . -...+++|+.|++++ + .+++... ...+++|++|+++++ .++. +..+.
T Consensus 39 ~l~~L~~L~l~~n~-i~~l--~-~l~~l~~L~~L~L~~--N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~- 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSL--A-GMQFFTNLKELHLSH--N-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIP- 104 (263)
T ss_dssp HHTTCSEEECTTSC-CCCC--T-TGGGCTTCCEEECCS--S-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCC-
T ss_pred hcCcCcEEECcCCC-cccc--h-HHhhCCCCCEEECCC--C-ccCCChh---hccCCCCCEEECCCC-ccCC--cCccc-
Confidence 45666666666654 3321 1 233466777777742 3 3433211 334667777777766 4432 11121
Q ss_pred cCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
. ++|++|++++| .+++ ..+..+++|++|++++| .+++. . ....+++|++|++++|.++.. ..+..+++|+
T Consensus 105 ~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~--~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~ 175 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSI--V-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVN 175 (263)
T ss_dssp C-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBC--G-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCC
T ss_pred c-CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCC--h-HHccCCCCCEEECCCCcCcch---HHhccCCCCC
Confidence 1 67777777777 3333 45667777777777776 34332 1 245577777777777766544 3345677788
Q ss_pred EEEccCCCCCCh
Q 007131 282 VLCALNCPVLEE 293 (617)
Q Consensus 282 ~L~l~~c~~~~~ 293 (617)
.|++++|+....
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 888877765443
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.74 E-value=6e-09 Score=108.31 Aligned_cols=182 Identities=16% Similarity=0.078 Sum_probs=128.4
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcC
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGP 160 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~ 160 (617)
+.++++...+..- . ...+++|++|+++++..... ....+++|++|+++++. ++... ...+++|++|+++.
T Consensus 67 ~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 67 TKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCAR 136 (457)
T ss_dssp SEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTT
T ss_pred CEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCC
Confidence 5566666544431 1 34568899999998866542 23368899999999886 44321 45688999999962
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCC
Q 007131 161 DFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNM 240 (617)
Q Consensus 161 ~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i 240 (617)
+ .++... ...+++|++|+++++..++.-. ...+++|++|++++| .++...+..+++|++|++++| .+
T Consensus 137 --N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N-~l 203 (457)
T 3bz5_A 137 --N-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTN-NI 203 (457)
T ss_dssp --S-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSS-CC
T ss_pred --C-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceeccccCCCCCEEECcCC-cC
Confidence 3 454421 3457899999999885444321 235789999999998 455544778899999999987 44
Q ss_pred CHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 241 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+... ...+++|++|++++|.++. ++ +..+++|+.|++++|.+.+.
T Consensus 204 ~~~~----l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 204 TKLD----LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SCCC----CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC
T ss_pred Ceec----cccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCc
Confidence 4321 4578999999999988765 33 56789999999999976543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-10 Score=124.38 Aligned_cols=179 Identities=17% Similarity=0.093 Sum_probs=89.1
Q ss_pred hCCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 101 RCMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
.+++|++|+++++..... .....+++|++|+++++. ++. +......+++|+.|+++ ++ .++.........
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~--~n-~l~~~~~~~~~~ 421 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQ--HS-TLKRVTEFSAFL 421 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECT--TS-EEESTTTTTTTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-ccc--chhhccCCCCCCeeECC--CC-ccCCccChhhhh
Confidence 456777777777754321 223366777777777765 221 11222346667777774 23 222211101123
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 252 (617)
.+++|++|++++| .++.... .....+++|++|++++| .+++ ..+..+++|++|++++| .++... ......+
T Consensus 422 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l 496 (606)
T 3vq2_A 422 SLEKLLYLDISYT-NTKIDFD-GIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS-WGVFDTL 496 (606)
T ss_dssp TCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTC
T ss_pred ccccCCEEECcCC-CCCccch-hhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccC-hhhhccc
Confidence 3566666666666 3322111 11234566666666666 2332 23455666666666665 332111 1112445
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|++|++++|.++... +..+..+++|+.|++++|.+.
T Consensus 497 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCC
T ss_pred ccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCc
Confidence 66666666666554321 233445666666666666543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.6e-10 Score=121.18 Aligned_cols=183 Identities=16% Similarity=0.103 Sum_probs=113.2
Q ss_pred HHhCCCceEEEecCCCCccHH----HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHH
Q 007131 99 ASRCMNLQKLRFRGAESADSI----IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAI 174 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l 174 (617)
...+++|++|+++++...... ....+++|++|+++++. ++.. .......+++|+.|+++ ++ .++.......
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~--~n-~l~~~~~~~~ 420 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLDLA--FT-RLKVKDAQSP 420 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEECT--TC-CEECCTTCCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEECC--CC-cCCCcccchh
Confidence 345688999999888665321 22367888999988875 3221 11223457888888885 23 3322111122
Q ss_pred HhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH------HHHhcCcCCCeecccCCCCCCHHHHHHH
Q 007131 175 ALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE------VALGNVLSVRFLSVAGTSNMKWGVVSQV 248 (617)
Q Consensus 175 ~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~------~~l~~~~~L~~L~l~~~~~i~~~~l~~l 248 (617)
...+++|++|+++++ .++..... ....+++|++|++++| .+++ ..+..+++|++|++++| .++... ...
T Consensus 421 ~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~ 495 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHS-LLDISSEQ-LFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID-QHA 495 (606)
T ss_dssp TTTCTTCCEEECTTC-CCBTTCTT-TTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC-TTT
T ss_pred hhCcccCCEEECCCC-ccCCcCHH-HHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-ccCccC-hhh
Confidence 334778888888887 44432111 2335688888888887 3433 34677888888888887 343211 122
Q ss_pred HhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 249 WHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 249 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
...+++|++|++++|.++... +..+.+++.| .|++++|.+.+.
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSS-IEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGG-GGGGTTCCSC-EEECCSSCCCCC
T ss_pred hccccCCCEEECCCCccCcCC-hhHhCccccc-EEECcCCccccc
Confidence 356788888888888776543 4445667778 888888876543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.73 E-value=8.5e-07 Score=85.67 Aligned_cols=136 Identities=15% Similarity=0.006 Sum_probs=99.2
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD 508 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~ 508 (617)
.++.|+.++.++++.++..|+.+|.++.. .++++.|+.++.++++.++..|+.+|..+....
T Consensus 129 ~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-------- 190 (280)
T 1oyz_A 129 IVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN-------- 190 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------
Confidence 34444555555555555555555554422 347999999999999999999999999985332
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
..+++.|+.++. +.++.++..|+.+|+++. ....++.|+.++.++ .++..|+.+|..+..
T Consensus 191 ~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~---- 250 (280)
T 1oyz_A 191 SDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN---TVYDDIIEAAGELGD---- 250 (280)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS---SCCHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc---cHHHHHHHHHHhcCc----
Confidence 246788899884 578899999999999985 345788899998763 388899999999842
Q ss_pred CCCccccccccCcHHHHHHHhcCC
Q 007131 589 NSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 589 ~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
...++.|..++...
T Consensus 251 ----------~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 251 ----------KTLLPVLDTMLYKF 264 (280)
T ss_dssp ----------GGGHHHHHHHHTTS
T ss_pred ----------hhhhHHHHHHHhcC
Confidence 24689999988754
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.2e-10 Score=112.38 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=42.5
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQL 158 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l 158 (617)
+.++++...+..- .......+++|++|+++++....... ...+++|++|+++++. ++... ......+++|+.|++
T Consensus 96 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 96 QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQL 172 (390)
T ss_dssp CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCC-TTTTSSCTTCCEEEC
T ss_pred CEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccC-hhhccCCCCCCEEEC
Confidence 5556655443321 11122345778888888775543211 1257788888888775 33211 112345778888888
Q ss_pred c
Q 007131 159 G 159 (617)
Q Consensus 159 ~ 159 (617)
+
T Consensus 173 ~ 173 (390)
T 3o6n_A 173 S 173 (390)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-09 Score=106.73 Aligned_cols=175 Identities=16% Similarity=0.204 Sum_probs=96.7
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHH-HHHHhcCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAV-KAIALCCPK 180 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l-~~l~~~~~~ 180 (617)
+++|++|+++++.... +.....++|++|+++++. ++.. .......+++|+.|+++. + .++..+. ......+++
T Consensus 99 l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~--n-~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENE-ITKV-RKSVFNGLNQMIVVELGT--N-PLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSC-CCBB-CHHHHTTCTTCCEEECCS--S-CCCGGGBCTTGGGGCTT
T ss_pred CCCCCEEECCCCcCCc-cChhhcccccEEECCCCc-cccc-CHhHhcCCccccEEECCC--C-cCCccCcChhhccCCCC
Confidence 4556666665554331 111123566666666654 3221 112234567777777742 3 3332111 112234677
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++. +. ....++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++
T Consensus 173 L~~L~l~~n-~l~~--l~--~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~ 244 (330)
T 1xku_A 173 LSYIRIADT-NITT--IP--QGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVD-NGSLANTPHLRE 244 (330)
T ss_dssp CCEEECCSS-CCCS--CC--SSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSS-CCCEEC-TTTGGGSTTCCE
T ss_pred cCEEECCCC-cccc--CC--ccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCceeC-hhhccCCCCCCE
Confidence 777777766 3332 10 012267778888777 3443 45677888888888886 343211 112346788888
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|.++ .++..+..+++|++|++++|++..
T Consensus 245 L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 245 LHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp EECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred EECCCCcCc--cCChhhccCCCcCEEECCCCcCCc
Confidence 888887765 334445667888888888887544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=98.71 E-value=9.1e-09 Score=100.15 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=112.0
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
.+++|++|+++++. +++. .. ...+++|+.|++++ + .+++.. . ...+++|++|+++++ .++. +.. ..
T Consensus 44 ~l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L~~--n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLNG--N-KLTDIK--P-LANLKNLGWLFLDEN-KVKD--LSS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEECCS--S-CCCCCG--G-GTTCTTCCEEECCSS-CCCC--GGG-GT
T ss_pred hcCcccEEEccCCC-cccC--hh-HhcCCCCCEEEccC--C-ccCCCc--c-cccCCCCCEEECCCC-cCCC--Chh-hc
Confidence 57899999999986 4432 12 45689999999963 4 554422 2 456899999999998 5554 222 45
Q ss_pred cCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+++|++|++++|..-.-..+..+++|++|++++| .++.. .....+++|++|++++|.++... . +..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~ 182 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQN 182 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCccccch--h-hcCCCccCE
Confidence 67999999999994333366889999999999998 44432 33567999999999999876533 1 678999999
Q ss_pred EEccCCCCCCh
Q 007131 283 LCALNCPVLEE 293 (617)
Q Consensus 283 L~l~~c~~~~~ 293 (617)
|++++|.+..-
T Consensus 183 L~L~~N~i~~l 193 (291)
T 1h6t_A 183 LYLSKNHISDL 193 (291)
T ss_dssp EECCSSCCCBC
T ss_pred EECCCCcCCCC
Confidence 99999976543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-10 Score=123.51 Aligned_cols=203 Identities=20% Similarity=0.176 Sum_probs=134.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH---HhcCCCccEEeccCCCCCCHHH-HHHHHhcCCCcceE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII---HLQARNLRELSGDYCRKITDAT-LSVIVARHEALESL 156 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-l~~i~~~~~~L~~L 156 (617)
+.+++.+..+... .......+++|++|+++++....... ...+++|++|+++++. ++... .......+++|++|
T Consensus 304 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 304 KKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp CEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEE
T ss_pred CEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEE
Confidence 4556665554432 11223457899999999986542221 2368999999999986 43321 12234568999999
Q ss_pred EEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeec
Q 007131 157 QLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLS 233 (617)
Q Consensus 157 ~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~ 233 (617)
+++ ++ .++..... ....+++|++|+++++ .++..........+++|++|++++|. ++. ..+..+++|++|+
T Consensus 382 ~l~--~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 382 NLS--YN-EPLSLKTE-AFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp ECC--SC-SCEEECTT-TTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEE
T ss_pred ECC--CC-cCCcCCHH-HhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEE
Confidence 996 34 34322111 2234799999999998 44432222224467999999999984 433 4578899999999
Q ss_pred ccCCCCCCHHHH--HHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 234 VAGTSNMKWGVV--SQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 234 l~~~~~i~~~~l--~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+++| .++...+ ......+++|++|++++|.++... +..+..+++|+.|++++|.+...
T Consensus 456 L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 456 LQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCGG
T ss_pred CCCC-CCCccccccchhhccCCCccEEECCCCccCccC-hhhhccccCCCEEECCCCccCcC
Confidence 9998 4433111 123467899999999998876432 34456799999999999976543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-10 Score=125.06 Aligned_cols=161 Identities=16% Similarity=0.070 Sum_probs=87.7
Q ss_pred cCCCccEEeccCCCCCCHHH-HHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH
Q 007131 123 QARNLRELSGDYCRKITDAT-LSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~-l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
.+++|++|+++++. ++... +......+++|+.|+++ +| .++.. ......+++|++|+++++ .++........
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~--~n-~l~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 420 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLS--FN-GAIIM--SANFMGLEELQHLDFQHS-TLKRVTEFSAF 420 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECC--SC-SEEEE--CCCCTTCTTCCEEECTTS-EEESTTTTTTT
T ss_pred cCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECC--CC-ccccc--hhhccCCCCCCeeECCCC-ccCCccChhhh
Confidence 44555555555553 22110 11223345666666664 23 22211 011223566777777766 33321111123
Q ss_pred hcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCC
Q 007131 202 KLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSK 278 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 278 (617)
..+++|++|++++|. ++. ..+..+++|++|++++| .+++..+......+++|++|++++|.++... +..+.+++
T Consensus 421 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCT
T ss_pred hccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccC-hhhhcccc
Confidence 356777788887773 332 34667788888888776 3332212223456788888888887765432 33456688
Q ss_pred CCCEEEccCCCCCCh
Q 007131 279 SLKVLCALNCPVLEE 293 (617)
Q Consensus 279 ~L~~L~l~~c~~~~~ 293 (617)
+|+.|++++|.+.+.
T Consensus 498 ~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFL 512 (606)
T ss_dssp TCCEEECCSSCCSCE
T ss_pred cCCEEECCCCcCCCc
Confidence 888888888875543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-09 Score=92.05 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=44.8
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC--HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
+++|++|+++++ .++.. .....+++|++|++++|...+ +..+..+++|++|++++| .+++.........+++|
T Consensus 41 l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTC
T ss_pred cCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCC
Confidence 444555555544 33221 112234455555555542111 122334555555555554 23332222223445555
Q ss_pred CeEEeccCCCCHHH--HHHHHhcCCCCCEEEcc
Q 007131 256 VGLDVSRTDVGPIT--ISRLLTSSKSLKVLCAL 286 (617)
Q Consensus 256 ~~L~l~~~~~~~~~--l~~~~~~~~~L~~L~l~ 286 (617)
++|++++|.++... ....+..+++|++|+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555555433221 11344456666666554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-10 Score=125.21 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=37.2
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
.+++|++|++++|. ++. ..+..+++|++|++++|. +++..+......+++|+.|++++|.++... +..+..+++
T Consensus 419 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 495 (570)
T 2z63_A 419 SLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSS 495 (570)
T ss_dssp TCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTT
T ss_pred cCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccC
Confidence 34555555555552 221 233445555555555542 211111122234555555555555443221 222334555
Q ss_pred CCEEEccCCC
Q 007131 280 LKVLCALNCP 289 (617)
Q Consensus 280 L~~L~l~~c~ 289 (617)
|++|++++|.
T Consensus 496 L~~L~l~~n~ 505 (570)
T 2z63_A 496 LQVLNMASNQ 505 (570)
T ss_dssp CCEEECCSSC
T ss_pred CCEEeCCCCc
Confidence 5555555554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-09 Score=115.01 Aligned_cols=182 Identities=13% Similarity=0.101 Sum_probs=122.1
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCH-HHHHHHHhcCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITS-DAVKAIALCCPKL 181 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~-~~l~~l~~~~~~L 181 (617)
+++++|+++++..........+++|++|+++++. +++. .......+++|+.|+++ ++ .++. ..+......+++|
T Consensus 331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~--~N-~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDS-VFQGCSTLKRLQTLILQ--RN-GLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTT-TTTTCCSCSSCCEEECC--SS-CCCBTTHHHHTTTTCTTC
T ss_pred CcceEEEccCCCcccccCccCCCCceEEECCCCc-cccc-hhhhhcccCCCCEEECC--CC-CcCCcccchhhhcCCCCC
Confidence 5788888888765432222467899999999886 5432 12223568899999996 34 5553 1223333557899
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcC-cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
++|+++++ .++...-......+++|++|++++| .++......+ ++|++|++++| .++ .+..-...+++|++|++
T Consensus 406 ~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~~L~~L~L~~N-~l~--~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 406 ETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVKVLDLHNN-RIM--SIPKDVTHLQALQELNV 480 (562)
T ss_dssp CEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCCTTCSEEECCSS-CCC--CCCTTTTSSCCCSEEEC
T ss_pred CEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhcCcCCEEECCCC-cCc--ccChhhcCCCCCCEEEC
Confidence 99999988 4443111112345689999999998 5766655666 69999999998 454 12221237889999999
Q ss_pred ccCCCCHHHHHH-HHhcCCCCCEEEccCCCCCChhHH
Q 007131 261 SRTDVGPITISR-LLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 261 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
++|.++. ++. .+..+++|+.|++++|+...+...
T Consensus 481 ~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 481 ASNQLKS--VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCCC--CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCC--CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9987762 232 356789999999999987776653
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-09 Score=106.46 Aligned_cols=177 Identities=16% Similarity=0.078 Sum_probs=114.9
Q ss_pred CCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
++++.|+++++...... ....+++|++|+++++. ++.... ...+++|+.|+++. + .++. +......+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~Ls~--N-~l~~--l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV---DGTLPVLGTLDLSH--N-QLQS--LPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC---CSCCTTCCEEECCS--S-CCSS--CCCCTTTCTT
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC---CCCCCcCCEEECCC--C-cCCc--CchhhccCCC
Confidence 57889999888665322 22367889999998876 433111 14678899999963 3 4431 2222345788
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.- .......+++|++
T Consensus 102 L~~L~l~~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 102 LTVLDVSFN-RLTSLP-LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTEL-PAGLLNGLENLDT 176 (290)
T ss_dssp CCEEECCSS-CCCCCC-SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCC-CTTTTTTCTTCCE
T ss_pred CCEEECCCC-cCcccC-HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCcc-CHHHhcCcCCCCE
Confidence 999999987 454211 012345688999999988 3433 34577889999999887 34311 1123356789999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
|++++|.++ .++.-+...++|+.|++++|+..-+..
T Consensus 177 L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 177 LLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EECCCCcCC--ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999998765 233334456789999999888665543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-09 Score=117.19 Aligned_cols=181 Identities=14% Similarity=0.145 Sum_probs=110.3
Q ss_pred HHhCCCceEEEecCCCCcc-----------------HHHHh----cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 99 ASRCMNLQKLRFRGAESAD-----------------SIIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~-----------------~~~~~----~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
...+++|+.|+|+++.+.. .++.. .+++|++|+|++|..... +......+++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEE
Confidence 4456888999998887665 13221 578889999988763222 223345688899999
Q ss_pred EcCCCCCCCCH-H---HHHHHH---hcCCCCCeeeccCccCCcHHHHHH--HHhcCCCCceEeecCCCCCCH-HHHhcCc
Q 007131 158 LGPDFCERITS-D---AVKAIA---LCCPKLKKLRLSGIRDICGDAINA--LAKLCPNLTDIGFLDCLNVDE-VALGNVL 227 (617)
Q Consensus 158 l~~~~~~~i~~-~---~l~~l~---~~~~~L~~L~l~~~~~i~~~~l~~--l~~~~~~L~~L~l~~~~~~~~-~~l~~~~ 227 (617)
|+ ++..++. . .+..+. ..+++|++|+++++ .++ .+.. ....+++|++|++++|. ++. ..+..++
T Consensus 522 Ls--~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~ 595 (876)
T 4ecn_A 522 IA--CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNV 595 (876)
T ss_dssp CT--TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTS
T ss_pred Cc--CCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCC
Confidence 95 3432665 2 222222 23568888888887 554 2322 33467888888888873 432 2456677
Q ss_pred CCCeecccCCCCCCHHHHHHHHhcCCC-CCeEEeccCCCCHHHHHHHHhcC--CCCCEEEccCCCCCC
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVWHKLPK-LVGLDVSRTDVGPITISRLLTSS--KSLKVLCALNCPVLE 292 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~l~~c~~~~ 292 (617)
+|++|++++| .++ .+..-...+++ |++|++++|.++ .++..+... ++|+.|++++|.+.+
T Consensus 596 ~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 596 KLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp EESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cceEEECcCC-ccc--cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCC
Confidence 8888888886 333 22222345666 888888887665 233333333 236677777666543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-10 Score=112.50 Aligned_cols=172 Identities=10% Similarity=0.101 Sum_probs=119.2
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
++|++|+++++..... ....+++|++|+++++. ++... ......+++|+.|+++ ++ .++......+...+++|+
T Consensus 99 ~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~Ls--~N-~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRV-SCSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLK--LN-EIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEE-EECCCSSCEEEECCSSC-CCSGG-GBCTGGGSSEEEEECT--TS-CCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCc-CccccCCCCEEECCCCC-CCCcc-chhhhccCCCCEEECC--CC-CCCcccHHHHhhccCcCC
Confidence 4455555555433321 12246788899988876 44321 1122457899999996 34 666544445555689999
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
+|+++++ .++.- ... ..+++|++|++++| .++. ..+..+++|++|++++| .++. +......+++|+.|++
T Consensus 173 ~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 173 HLNLQYN-FIYDV--KGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDL 244 (317)
T ss_dssp EEECTTS-CCCEE--ECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEEC
T ss_pred EEECCCC-cCccc--ccc-cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccc--hhhHhhcCCCCCEEEc
Confidence 9999998 55432 111 14799999999999 4554 34788999999999998 4542 2223467899999999
Q ss_pred ccCCCCHHHHHHHHhcCCCCCEEEccCC
Q 007131 261 SRTDVGPITISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~L~~L~l~~c 288 (617)
++|.++...++..+..+++|+.+++.++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCc
Confidence 9999997778888888988888887744
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-09 Score=112.90 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=112.5
Q ss_pred hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHH
Q 007131 122 LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALA 201 (617)
Q Consensus 122 ~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 201 (617)
..+++|+.|+++++. +.+. .. ...+++|+.|+|+ +| .+++.. . ...+++|+.|+|++| .++. +.. .
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l--~~-l~~l~~L~~L~Ls--~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~--l~~-l 105 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFLN--GN-KLTDIK--P-LTNLKNLGWLFLDEN-KIKD--LSS-L 105 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCC--TT-GGGCTTCCEEECT--TS-CCCCCG--G-GGGCTTCCEEECCSS-CCCC--CTT-S
T ss_pred hcCCCCCEEECcCCC-CCCC--hH-HccCCCCCEEEee--CC-CCCCCh--h-hccCCCCCEEECcCC-CCCC--Chh-h
Confidence 367899999999887 4332 12 4569999999996 34 454322 1 456899999999998 5554 222 3
Q ss_pred hcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 202 KLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
..+++|++|++++|..-....+..+++|+.|++++| .++.. .....+++|+.|++++|.++... + +..+++|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~ 178 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTKLQ 178 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSCCCCCG-G--GTTCTTCC
T ss_pred ccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCcCCCch-h--hccCCCCC
Confidence 467999999999995444466889999999999998 44432 33567999999999999876532 2 67899999
Q ss_pred EEEccCCCCCCh
Q 007131 282 VLCALNCPVLEE 293 (617)
Q Consensus 282 ~L~l~~c~~~~~ 293 (617)
.|+|++|.+...
T Consensus 179 ~L~Ls~N~i~~l 190 (605)
T 1m9s_A 179 NLYLSKNHISDL 190 (605)
T ss_dssp EEECCSSCCCBC
T ss_pred EEECcCCCCCCC
Confidence 999999976553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.6e-10 Score=116.60 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=52.1
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+++|++|+++++ .++...-. ....+++|++|++++| .++. ..+ ..+++|++|++++|. ++.. .. ...++
T Consensus 119 l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~-~~~l~ 191 (487)
T 3oja_A 119 GQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KG-QVVFA 191 (487)
T ss_dssp CSSCEEEECCSS-CCCSGGGB-CGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--EC-CCCCT
T ss_pred cCCCCEEECCCC-CCCCCCch-hhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccc--cc-cccCC
Confidence 455666666655 33321111 1123466666666666 3332 222 245666666666652 3211 00 11356
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+|++|++++|.++.. +..+..+++|+.|++++|.+.
T Consensus 192 ~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 192 KLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp TCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCC
T ss_pred CCCEEECCCCCCCCC--CHhHcCCCCccEEEecCCcCc
Confidence 666666666655431 112345666666666666544
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-11 Score=117.93 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=75.1
Q ss_pred hCCCceEEEecC-CCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 101 RCMNLQKLRFRG-AESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 101 ~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
.+++|++|++++ +......+ ...+++|++|+++++. ++.. +......+++|++|++++ + .++.. +......
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~Ls~--N-~l~~~-~p~~~~~ 147 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGA-IPDFLSQIKTLVTLDFSY--N-ALSGT-LPPSISS 147 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEE-CCGGGGGCTTCCEEECCS--S-EEESC-CCGGGGG
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCc-CCHHHhCCCCCCEEeCCC--C-ccCCc-CChHHhc
Confidence 346666666664 33221111 1245666666666554 2210 111223456666666641 2 22211 0111223
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCC-CCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCP-NLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~-~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+++|++|+++++ .++......+. .++ +|++|++++|. ++ ...+..++ |++|++++|. ++.. .......++
T Consensus 148 l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~ 221 (313)
T 1ogq_A 148 LPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNR-LTGKIPPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSDK 221 (313)
T ss_dssp CTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSE-EEEECCGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTTS
T ss_pred CCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCCe-eeccCChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcCC
Confidence 566666666655 33311111122 223 56666666552 22 12333333 5555555541 2110 111223455
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
+|+.|++++|.++... +. +..+++|++|++++|.+
T Consensus 222 ~L~~L~L~~N~l~~~~-~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDL-GK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CCSEEECCSSEECCBG-GG-CCCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCceeeec-Cc-ccccCCCCEEECcCCcc
Confidence 5666666655443211 11 23455666666665554
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.1e-10 Score=108.33 Aligned_cols=182 Identities=14% Similarity=0.012 Sum_probs=101.5
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++....... ...+++|++|+++++. ++... ......+++|++|+++. + .++...... ...+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l 123 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVE--T-NLASLENFP-IGHL 123 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTT--S-CCCCSTTCC-CTTC
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccC-hhhhcCCccccEEECCC--C-CccccCchh-cccC
Confidence 35677777777775443211 2256777777777765 32211 11224567777777752 3 332211001 2346
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCC----eecccCCCCCCHHHHHHHHhc
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVR----FLSVAGTSNMKWGVVSQVWHK 251 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~----~L~l~~~~~i~~~~l~~l~~~ 251 (617)
++|++|+++++ .++...+......+++|++|++++| .++. ..+..+++|+ +|++++| .++... .-...
T Consensus 124 ~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~--~~~~~ 198 (276)
T 2z62_A 124 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQ--PGAFK 198 (276)
T ss_dssp TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEEC--TTSSC
T ss_pred CCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCC-cccccC--ccccC
Confidence 77788887776 4432112222345677888888777 3433 3344444444 6777775 332111 00112
Q ss_pred CCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 252 LPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
..+|+.|++++|.++... ..++..+++|+.|++++|+...+.
T Consensus 199 ~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 199 EIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCcccEEECCCCceeecC-HhHhcccccccEEEccCCcccccC
Confidence 347999999998765322 334567899999999988866554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.2e-09 Score=104.75 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=84.6
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++....... ...+++|++|+++++. ++... ....++|++|++++ + .++...... ...+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~----~~~~~~L~~L~l~~--n-~l~~~~~~~-~~~l 144 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELP----EKMPKTLQELRVHE--N-EITKVRKSV-FNGL 144 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCC----SSCCTTCCEEECCS--S-CCCBBCHHH-HTTC
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccC----hhhcccccEEECCC--C-cccccCHhH-hcCC
Confidence 34556666666554332111 1145566666665554 22100 01124566666642 2 333211111 2335
Q ss_pred CCCCeeeccCccCCcHHH-HHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 179 PKLKKLRLSGIRDICGDA-INALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
++|++|+++++ .++..+ .......+++|++|++++| .++.......++|++|++++| .++... ......+++|++
T Consensus 145 ~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~ 220 (330)
T 1xku_A 145 NQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGN-KITKVD-AASLKGLNNLAK 220 (330)
T ss_dssp TTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTS-CCCEEC-TGGGTTCTTCCE
T ss_pred ccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCC-cCCccC-HHHhcCCCCCCE
Confidence 66666666665 332211 1112234566666666665 233211112256677777665 233211 112345677777
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
|++++|.++... ...+..+++|+.|++++|.+.
T Consensus 221 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 221 LGLSFNSISAVD-NGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp EECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCS
T ss_pred EECCCCcCceeC-hhhccCCCCCCEEECCCCcCc
Confidence 777776654322 123345777777777777644
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-09 Score=95.40 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+++++ .++.. .....+++|++|++++|. ++. ..+..+++|++|++++| .+++.........+++
T Consensus 48 l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~ 121 (168)
T 2ell_A 48 FVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC 121 (168)
T ss_dssp GGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSC
T ss_pred CCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCC
Confidence 455555555555 33321 122334556666666553 222 22344666666666665 3332111122345666
Q ss_pred CCeEEeccCCCCHHH--HHHHHhcCCCCCEEEccCCCC
Q 007131 255 LVGLDVSRTDVGPIT--ISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 255 L~~L~l~~~~~~~~~--l~~~~~~~~~L~~L~l~~c~~ 290 (617)
|++|++++|.++... ....+..+++|++|++++|..
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777777666543221 123556677777777777764
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.63 E-value=8.6e-09 Score=89.30 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=86.6
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
.++|++|+++++ .+++..+......+++|++|++++|. ++. ..+..+++|++|++++| .++.. +......+++|+
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCC
Confidence 468999999988 56633344444678999999999994 444 56788999999999998 44432 455566799999
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
+|++++|.++.......+..+++|++|++++|++...
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 9999999988755456678899999999999975543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.1e-09 Score=108.46 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=15.9
Q ss_pred hCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCC
Q 007131 101 RCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCR 136 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~ 136 (617)
.+++|+.|+++++...... ....+++|++|+++++.
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 104 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC
Confidence 3455555555554332211 11134555555555543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-09 Score=93.65 Aligned_cols=131 Identities=27% Similarity=0.317 Sum_probs=72.3
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
++|++|++++|. +++..+......+++|+.|++++ | .++.. .....+++|++|+++++ .++.. +..+...+
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~--n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLIN--V-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEES--S-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcC--C-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhC
Confidence 556666666554 33222222234466777777752 3 34332 22234667777777776 44332 23344456
Q ss_pred CCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHH-HHHHHhcCCCCCeEEeccCCC
Q 007131 205 PNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGV-VSQVWHKLPKLVGLDVSRTDV 265 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~-l~~l~~~~~~L~~L~l~~~~~ 265 (617)
++|++|++++| .+++ ..+..+++|++|++++|.-..... .......+++|++|+++++..
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 77777777777 3443 345677778888887763221111 123456678888888777643
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=98.61 E-value=4e-10 Score=111.17 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=122.2
Q ss_pred HhCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 100 SRCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
..+++|++|+++++......+ ...+++|++|+++++. ++.. +......+++|++|+++ ++ .++......+..
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~L~--~N-~l~~~~p~~l~~- 171 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGT-LPPSISSLPNLVGITFD--GN-RISGAIPDSYGS- 171 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESC-CCGGGGGCTTCCEEECC--SS-CCEEECCGGGGC-
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCc-CChHHhcCCCCCeEECc--CC-cccCcCCHHHhh-
Confidence 457899999999987753322 2378999999999986 3211 12234568999999996 34 454221222333
Q ss_pred CC-CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCC--CCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CP-KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN--VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~-~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
++ +|++|+++++ .++......+ ..++ |++|++++|.. .....+..+++|++|++++|. ++... .. ...+++
T Consensus 172 l~~~L~~L~L~~N-~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~-~~~l~~ 245 (313)
T 1ogq_A 172 FSKLFTSMTISRN-RLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDL-GK-VGLSKN 245 (313)
T ss_dssp CCTTCCEEECCSS-EEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBG-GG-CCCCTT
T ss_pred hhhcCcEEECcCC-eeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeec-Cc-ccccCC
Confidence 55 9999999998 4442211222 2344 99999999842 223556889999999999984 33111 11 356899
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++|++++|.++.. ++..+..+++|+.|++++|.+.+
T Consensus 246 L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 246 LNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCEEECcCCcccCc-CChHHhcCcCCCEEECcCCcccc
Confidence 99999999987533 24456779999999999997553
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.1e-10 Score=119.43 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCCceEEEecCCCCccH----HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhc
Q 007131 102 CMNLQKLRFRGAESADS----IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALC 177 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~ 177 (617)
+++|++|+++++..... .....+++|++|+++++. ++...-. ...+++|+.|+++ ++ .++..........
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~--~n-~l~~~~~~~~~~~ 419 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQ--HS-NLKQMSEFSVFLS 419 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECT--TS-EEESCTTSCTTTT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEcc--CC-ccccccchhhhhc
Confidence 34555555555443321 122245666666666654 2110000 2346677777774 23 2221111112345
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
+++|++|++++| .++... ......+++|++|++++|. +++ ..+..+++|++|++++| .++... ......++
T Consensus 420 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~ 494 (570)
T 2z63_A 420 LRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNSLS 494 (570)
T ss_dssp CTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCT
T ss_pred CCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCC-hhhhhccc
Confidence 789999999988 443321 1233467999999999994 442 35678999999999998 444321 12235789
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+|++|++++|.++... +..+..+++|+.|++++|+...+.
T Consensus 495 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 495 SLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp TCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCC
Confidence 9999999998765432 344567999999999999877654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-09 Score=105.14 Aligned_cols=174 Identities=16% Similarity=0.110 Sum_probs=120.8
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++++.+++.++.... ++....++++.|+++++. ++... ......+++|+.|+|++ + .++... .. ..+++|
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~--~~-~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENL-LYTFS-LATLMPYTRLTQLNLDR--A-ELTKLQ--VD-GTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSC-CSEEE-GGGGTTCTTCCEEECTT--S-CCCEEE--CC-SCCTTC
T ss_pred cCCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCc-CCccC-HHHhhcCCCCCEEECCC--C-ccCccc--CC-CCCCcC
Confidence 4678999998765432 222235799999999987 44321 12345689999999963 3 454321 11 468999
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
++|+++++ .++. +......+++|++|++++| .++. ..+..+++|++|++++| .++.. .......+++|+.|
T Consensus 80 ~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSS-CCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEE
T ss_pred CEEECCCC-cCCc--CchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCCEE
Confidence 99999998 5542 2223356799999999998 4443 45788999999999998 44321 12223568999999
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++++|.++.-. ..++..+++|+.|++++|.+.
T Consensus 154 ~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 154 SLANNNLTELP-AGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccC-HHHhcCcCCCCEEECCCCcCC
Confidence 99998876321 234567899999999999765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-09 Score=102.23 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=91.9
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
++++.|+++++. ++... ......+++|++|+|++ + .++.... .....+++|++|+++++ .++.-. ......+
T Consensus 35 ~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l 106 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLS-DATFRGLTKLTWLNLDY--N-QLQTLSA-GVFDDLTELGTLGLANN-QLASLP-LGVFDHL 106 (251)
T ss_dssp TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTT--S-CCCCCCT-TTTTTCTTCCEEECTTS-CCCCCC-TTTTTTC
T ss_pred CCCCEEEccCCC-cCccC-HhHhcCcccCCEEECCC--C-cCCccCH-hHhccCCcCCEEECCCC-cccccC-hhHhccc
Confidence 456666666554 22211 01123466777777742 2 3332111 11234677788887776 443211 1123456
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.++... +..+..+++|+
T Consensus 107 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 182 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIP-AGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQ 182 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCC
T ss_pred CCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccC-HHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCC
Confidence 88888888887 3443 33567888888888887 443211 112356788999999998765322 23456789999
Q ss_pred EEEccCCCCCCh
Q 007131 282 VLCALNCPVLEE 293 (617)
Q Consensus 282 ~L~l~~c~~~~~ 293 (617)
.|++++|+...+
T Consensus 183 ~L~l~~N~~~c~ 194 (251)
T 3m19_A 183 TITLFGNQFDCS 194 (251)
T ss_dssp EEECCSCCBCTT
T ss_pred EEEeeCCceeCC
Confidence 999999986655
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-09 Score=112.92 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=36.7
Q ss_pred CCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 102 CMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
+++|++|+|++|....... ...+++|++|+++++. ++.. ...++..+++|+.|+|++ + .++...... ...++
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l-~~~~~~~l~~L~~L~Ls~--N-~l~~~~~~~-~~~l~ 171 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSL-PRGIFHNTPKLTTLSMSN--N-NLERIEDDT-FQATT 171 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCS--S-CCCBCCTTT-TTTCT
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCC-CHHHhccCCCCCEEEeeC--C-cCCCCChhh-hhcCC
Confidence 4555666665554332111 1245566666666554 3210 111223456666666642 2 232211111 12356
Q ss_pred CCCeeeccCc
Q 007131 180 KLKKLRLSGI 189 (617)
Q Consensus 180 ~L~~L~l~~~ 189 (617)
+|++|+++++
T Consensus 172 ~L~~L~L~~N 181 (597)
T 3oja_B 172 SLQNLQLSSN 181 (597)
T ss_dssp TCCEEECTTS
T ss_pred cCcEEECcCC
Confidence 6666666665
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-09 Score=121.66 Aligned_cols=177 Identities=19% Similarity=0.203 Sum_probs=72.6
Q ss_pred HhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
..+++|++|+++++..........+++|++|+++++. ++.. +.. ...+++|++|+++ +| .+++..... ...++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~-l~~l~~L~~L~Ls--~n-~l~~~~~~~-l~~l~ 247 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN-FSTG-IPF-LGDCSALQHLDIS--GN-KLSGDFSRA-ISTCT 247 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSC-CCSC-CCB-CTTCCSCCEEECC--SS-CCCSCHHHH-TTTCS
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCc-CCCC-Ccc-cccCCCCCEEECc--CC-cCCCcccHH-HhcCC
Confidence 3445555555555433221111345555555555554 2110 011 3345556666663 23 333222222 23355
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHH-hcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VAL-GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l-~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
+|++|++++| .++.. +.. . .+++|++|++++|. ++. ..+ ..+++|++|++++|. ++.. +......+++|
T Consensus 248 ~L~~L~Ls~n-~l~~~-~~~-~-~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L 320 (768)
T 3rgz_A 248 ELKLLNISSN-QFVGP-IPP-L-PLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNH-FYGA-VPPFFGSCSLL 320 (768)
T ss_dssp SCCEEECCSS-CCEES-CCC-C-CCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSE-EEEC-CCGGGGGCTTC
T ss_pred CCCEEECCCC-cccCc-cCc-c-ccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCc-CCCc-cchHHhcCCCc
Confidence 5666655555 22210 000 0 33445555554442 111 111 223555555555542 1100 01112345566
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
++|++++|.++...-...+..+++|++|++++|..
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 66666665432111112234456666666665543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.6e-09 Score=109.64 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=55.0
Q ss_pred hCCCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+|+++....... ...+++|++|+++++. ++.. .......+++|+.|++++ + .++...... ...+
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l 151 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVIL-LDYMFQDLYNLKSLEVGD--N-DLVYISHRA-FSGL 151 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEECC--T-TCCEECTTS-STTC
T ss_pred CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccC-ChhHccccccCCEEECCC--C-ccceeChhh-ccCC
Confidence 34556666666554322111 1245566666666554 2211 011123455666666641 2 222111111 1235
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGT 237 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~ 237 (617)
++|++|+++++ .++.-.. .....+++|+.|++++|. ++. ..+..+++|++|++++|
T Consensus 152 ~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 152 NSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp TTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECC
T ss_pred CCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCC
Confidence 56666666655 3332111 112345566666665552 222 23344555555555544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-09 Score=110.00 Aligned_cols=180 Identities=20% Similarity=0.207 Sum_probs=86.2
Q ss_pred hCCCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++...... ....+++|++|+++++. ++... ......+++|+.|++++ + .++...... ...+
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~~~~~~-l~~l 175 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYIS-HRAFSGLNSLEQLTLEK--C-NLTSIPTEA-LSHL 175 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEEC-TTSSTTCTTCCEEEEES--C-CCSSCCHHH-HTTC
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeC-hhhccCCCCCCEEECCC--C-cCcccChhH-hccc
Confidence 4566777777766543221 11245666666666654 22110 01123456666666642 2 232211111 2235
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCC------------------------CCceEeecCCCCCC---HHHHhcCcCCCe
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCP------------------------NLTDIGFLDCLNVD---EVALGNVLSVRF 231 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~------------------------~L~~L~l~~~~~~~---~~~l~~~~~L~~ 231 (617)
++|+.|+++++ .++.... .....++ +|++|++++| .++ ...+..+++|++
T Consensus 176 ~~L~~L~l~~n-~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 176 HGLIVLRLRHL-NINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp TTCCEEEEESC-CCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCE
T ss_pred CCCcEEeCCCC-cCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCe
Confidence 55555555554 2221000 0111233 5555555555 222 234566677777
Q ss_pred ecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 232 LSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 232 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++++|. ++... ......+++|+.|++++|.++... +..+..+++|+.|++++|.+..
T Consensus 253 L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 253 LNLSYNP-ISTIE-GSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp EECCSSC-CCEEC-TTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSSCCSC
T ss_pred eECCCCc-CCccC-hhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCCcCce
Confidence 7777652 32111 111245667777777776554321 2234457777777777775443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-08 Score=97.74 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=106.3
Q ss_pred hCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 101 RCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
.+++|++|+++++..........+++|++|+++++. +++..- ...+++|+.|++++ + .+++ +..+.. ++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~---l~~l~~L~~L~L~~--N-~l~~--l~~~~~--~~ 107 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLSP---LKDLTKLEELSVNR--N-RLKN--LNGIPS--AC 107 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCSSCCEEECCS--S-CCSC--CTTCCC--SS
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCChh---hccCCCCCEEECCC--C-ccCC--cCcccc--Cc
Confidence 358899999999865432222378999999999986 544222 56799999999963 3 4543 112222 89
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
|++|+++++ .++.- .. ...+++|++|++++|. +++ ..+..+++|++|++++| .+++. .....+++|+.|+
T Consensus 108 L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 108 LSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWID 178 (263)
T ss_dssp CCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEE
T ss_pred ccEEEccCC-ccCCC--hh-hcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEe
Confidence 999999998 66542 22 4468999999999994 554 56788999999999998 45443 3346789999999
Q ss_pred eccCCCC
Q 007131 260 VSRTDVG 266 (617)
Q Consensus 260 l~~~~~~ 266 (617)
+++|.++
T Consensus 179 l~~N~~~ 185 (263)
T 1xeu_A 179 LTGQKCV 185 (263)
T ss_dssp EEEEEEE
T ss_pred CCCCccc
Confidence 9997653
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-09 Score=115.09 Aligned_cols=179 Identities=9% Similarity=0.139 Sum_probs=100.8
Q ss_pred HHhCCCceEEEecCCCCccH-----------------HHHh----cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 99 ASRCMNLQKLRFRGAESADS-----------------IIHL----QARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~----~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
...+++|++|+|+++.+... ++.. .+++|++|++++|..... +......+++|+.|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCCEEE
Confidence 34567888898888876552 2221 478888888888763221 222334578888888
Q ss_pred EcCCCCCCCCH-HHHHHHHh-----cCCCCCeeeccCccCCcHHHHHH--HHhcCCCCceEeecCCCCCC-H-HHHhcCc
Q 007131 158 LGPDFCERITS-DAVKAIAL-----CCPKLKKLRLSGIRDICGDAINA--LAKLCPNLTDIGFLDCLNVD-E-VALGNVL 227 (617)
Q Consensus 158 l~~~~~~~i~~-~~l~~l~~-----~~~~L~~L~l~~~~~i~~~~l~~--l~~~~~~L~~L~l~~~~~~~-~-~~l~~~~ 227 (617)
++ ++..++. .....+.. .+++|++|+++++ .++ .+.. ....+++|++|++++|. ++ . ..+..++
T Consensus 280 Ls--~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~ 353 (636)
T 4eco_A 280 VA--CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEI 353 (636)
T ss_dssp CT--TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEE
T ss_pred Cc--CCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCC
Confidence 85 3533665 22222322 2478888888887 554 2322 33467888888888873 33 1 1445556
Q ss_pred CCCeecccCCCCCCHHHHHHHHhcCCC-CCeEEeccCCCCHHHHHHHHhcC--CCCCEEEccCCCC
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVWHKLPK-LVGLDVSRTDVGPITISRLLTSS--KSLKVLCALNCPV 290 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~l~~c~~ 290 (617)
+|++|++++| .++ .+..-...+++ |++|++++|.++ .++..+... ++|+.|++++|.+
T Consensus 354 ~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 354 KLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp EESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcC
Confidence 6666666665 222 11111234555 666666665544 222222222 2455555555544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-08 Score=112.90 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=80.8
Q ss_pred hCCCceEEEecCCCCccHHHH--hcCCCccEEeccCCCCCCH-H---HHHHHH---hcCCCcceEEEcCCCCCCCCHHHH
Q 007131 101 RCMNLQKLRFRGAESADSIIH--LQARNLRELSGDYCRKITD-A---TLSVIV---ARHEALESLQLGPDFCERITSDAV 171 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~-~---~l~~i~---~~~~~L~~L~l~~~~~~~i~~~~l 171 (617)
.+++|++|+|++|.+...++. ..+++|+.|+++++..++. . .+..+. ..+++|+.|+|++ + .++ .+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~--N-~L~--~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY--N-NLE--EF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS--S-CCC--BC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC--C-cCC--cc
Confidence 568899999999876544332 3788999999999864655 1 132222 3566999999963 3 454 23
Q ss_pred HH--HHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcC-CCeecccCC
Q 007131 172 KA--IALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLS-VRFLSVAGT 237 (617)
Q Consensus 172 ~~--l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~-L~~L~l~~~ 237 (617)
.. ....+++|++|+++++ .++ .+. ....+++|++|++++|. ++. ..+..+++ |++|++++|
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred CChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence 22 3345788888888887 454 222 23456777777777773 332 23455566 667766665
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-08 Score=106.27 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=81.1
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcH-HHHHHHHhcCCCCceEeecCCCCCCH-H---H
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDE-V---A 222 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~---~ 222 (617)
..+++|++|+++ ++ .+++.....+ ..+++|++|+++++ .++. ..+......+++|++|++++|. ++. . .
T Consensus 321 ~~l~~L~~L~Ls--~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFS--NN-LLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECC--SS-CCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCS
T ss_pred hhCCcccEEEeE--CC-ccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccch
Confidence 356778888885 23 4444222222 34678888888877 4543 2333344567888888888874 332 1 2
Q ss_pred HhcCcCCCeecccCCCCCCHHHHHHHHhcC-CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 223 LGNVLSVRFLSVAGTSNMKWGVVSQVWHKL-PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 223 l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+..+++|++|++++| .++... ...+ ++|+.|++++|.++ .++..+..+++|+.|++++|.+.
T Consensus 395 ~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSN-ILTDTI----FRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCCCTTCCEEECCSS-CCCGGG----GGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hccCccCCEEECcCC-CCCcch----hhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCC
Confidence 456678888888887 344221 2233 57888888888776 34443446888888888888654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.3e-09 Score=103.57 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=55.9
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|+.|++++|.++ .++..+..+++|+
T Consensus 193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIE-NGSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCC-TTGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCC
T ss_pred CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCC-hhHhhCCCCCCEEECCCCcCe--ecChhhhcCccCC
Confidence 57777777777 3333 34677888888888887 333211 112356888999999888776 3344456788899
Q ss_pred EEEccCCCCCC
Q 007131 282 VLCALNCPVLE 292 (617)
Q Consensus 282 ~L~l~~c~~~~ 292 (617)
.|++++|++..
T Consensus 268 ~L~l~~N~l~~ 278 (332)
T 2ft3_A 268 VVYLHTNNITK 278 (332)
T ss_dssp EEECCSSCCCB
T ss_pred EEECCCCCCCc
Confidence 99998887543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-09 Score=101.75 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=116.5
Q ss_pred CceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCe
Q 007131 104 NLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKK 183 (617)
Q Consensus 104 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~ 183 (617)
+.+.+++++..... ++....++|++|+++++. ++... ......+++|++|++++ + .++... ..+...+++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~--n-~l~~i~-~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIPADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLND--N-KLQTLP-AGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCCTTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCS--S-CCSCCC-TTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCc-cCCCCCCCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCC--C-ccCeeC-hhhhcCCCCCCE
Confidence 46788888765442 222234689999999986 43311 11234689999999963 3 443211 112245899999
Q ss_pred eeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEe
Q 007131 184 LRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDV 260 (617)
Q Consensus 184 L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l 260 (617)
|+++++ .++.-.. .....+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|++|++
T Consensus 90 L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 90 LWVTDN-KLQALPI-GVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLP-KGVFDKLTSLKELRL 164 (270)
T ss_dssp EECCSS-CCCCCCT-TTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEEC
T ss_pred EECCCC-cCCcCCH-hHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccC-HhHccCCcccceeEe
Confidence 999988 4543111 233467999999999984 433 45688999999999998 343211 122456899999999
Q ss_pred ccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 261 SRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
++|.++... ...+..+++|++|++++|.+.
T Consensus 165 ~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 165 YNNQLKRVP-EGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSSCCSCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCcEeC-hhHhccCCCcCEEECCCCcCC
Confidence 998765422 223557899999999999754
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-09 Score=116.83 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=120.6
Q ss_pred cccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHH---HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 81 SSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSI---IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
+.++++...+..-. ......+++|+.|+++++...... ....+++|++|+++++. ++... ......+++|+.|+
T Consensus 384 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 384 HILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLT-RNSFALVPSLQRLM 460 (680)
T ss_dssp CEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECC-TTTTTTCTTCCEEE
T ss_pred ceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeC-hhhhhcCcccccch
Confidence 45555554443211 112345688999999988765322 22367899999999886 22110 11223578899999
Q ss_pred EcCCCCCCCCH-HHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHH-----------HHhc
Q 007131 158 LGPDFCERITS-DAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEV-----------ALGN 225 (617)
Q Consensus 158 l~~~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-----------~l~~ 225 (617)
++. + .+.. .........+++|++|+++++ .++.-. ......+++|++|++++| .++.. .+..
T Consensus 461 l~~--n-~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 461 LRR--V-ALKNVDSSPSPFQPLRNLTILDLSNN-NIANIN-DDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp CTT--S-CCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTT
T ss_pred hcc--c-cccccccCCcccccCCCCCEEECCCC-CCCcCC-hhhhccccccCEEeCCCC-CccccchhhccCCcchhhcC
Confidence 853 3 2211 011111245788888988887 444211 112345788888888887 34431 2567
Q ss_pred CcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 226 VLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 226 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+++|++|++++| .++.-. .....++++|+.|++++|.++.-. +..+.++++|+.|++++|.+.+..
T Consensus 535 l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 535 LSHLHILNLESN-GFDEIP-VEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCCCCEEECCCC-CCCCCC-HHHcccccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccC
Confidence 788888888887 343100 122456788888888887765321 234456788888888888655443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-09 Score=102.18 Aligned_cols=177 Identities=10% Similarity=-0.002 Sum_probs=99.9
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+++++....... ...+++|++|+++++..++... ......+++|++|+++ +|+.++.... .....+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~--~~n~l~~i~~-~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIR--NTRNLTYIDP-DALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEE--EETTCCEECT-TSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECC--CCCCeeEcCH-HHhCCCCC
Confidence 367888887775543211 2256788888887774232211 1122457788888885 2345542111 11234678
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCc---eEeecCCCCCCH---HHHhcCcCCC-eecccCCCCCCHHHHHHHHhcCC
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLT---DIGFLDCLNVDE---VALGNVLSVR-FLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~---~L~l~~~~~~~~---~~l~~~~~L~-~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
|++|+++++ .++. +.. ...+++|+ +|++++|..++. ..+..+++|+ +|++++| .++.-. ...... +
T Consensus 107 L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~-~~~~~~-~ 179 (239)
T 2xwt_C 107 LKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQ-GYAFNG-T 179 (239)
T ss_dssp CCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEEC-TTTTTT-C
T ss_pred CCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccC-HhhcCC-C
Confidence 888888876 3432 222 33456676 888887743443 3466778888 8888776 333111 111122 6
Q ss_pred CCCeEEeccCC-CCHHHHHHHHhcC-CCCCEEEccCCCCC
Q 007131 254 KLVGLDVSRTD-VGPITISRLLTSS-KSLKVLCALNCPVL 291 (617)
Q Consensus 254 ~L~~L~l~~~~-~~~~~l~~~~~~~-~~L~~L~l~~c~~~ 291 (617)
+|+.|++++|. ++... ...+.++ ++|+.|++++|.+.
T Consensus 180 ~L~~L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEEEECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCEEEcCCCCCcccCC-HHHhhccccCCcEEECCCCccc
Confidence 78888888873 54221 2334556 78888888877654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-07 Score=102.91 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=64.5
Q ss_pred hcCCCCCeeeccCccCCcHH----------------HHHHHHh--cCCCCceEeecCCCCCC--HHHHhcCcCCCeeccc
Q 007131 176 LCCPKLKKLRLSGIRDICGD----------------AINALAK--LCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVA 235 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~----------------~l~~l~~--~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~ 235 (617)
..+++|++|+|+++ .++.. .+..-.. .+++|++|++++|...+ ...+..+++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 34677777777766 45441 0111112 56677777777763222 2455667777777777
Q ss_pred CCCCCCHHHHHHHH------hcCCCCCeEEeccCCCCHHHHHH--HHhcCCCCCEEEccCCCCC
Q 007131 236 GTSNMKWGVVSQVW------HKLPKLVGLDVSRTDVGPITISR--LLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 236 ~~~~i~~~~l~~l~------~~~~~L~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~l~~c~~~ 291 (617)
+|..++...+..-. ..+++|++|++++|.++ .++. .+..+++|++|++++|.+.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCc
Confidence 76435541222211 23467777777777665 3444 5566777777777777644
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-07 Score=102.32 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=67.5
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
.++|+.|+++++ .++. +...+++|++|++++| .++.-. ..+++|++|++++| .++. +...+++|++
T Consensus 200 ~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N-~L~~lp-~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~ 265 (622)
T 3g06_A 200 PSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGN-RLTSLP-VLPSELKELMVSGN-RLTS-----LPMLPSGLLS 265 (622)
T ss_dssp CTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSCCC-CCCTTCCEEECCSS-CCSC-----CCCCCTTCCE
T ss_pred cchhhEEECcCC-cccc-----cCCCCCCCCEEEccCC-ccCcCC-CCCCcCcEEECCCC-CCCc-----CCcccccCcE
Confidence 356666666655 3331 1223477888888877 444321 45688899999887 4431 2226788999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
|++++|.++ .++..+.++++|+.|++++|++.+..
T Consensus 266 L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 266 LSVYRNQLT--RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp EECCSSCCC--SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred EeCCCCCCC--cCCHHHhhccccCEEEecCCCCCCcC
Confidence 999998877 44555678899999999999865443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-08 Score=87.30 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=66.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcC
Q 007131 150 HEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNV 226 (617)
Q Consensus 150 ~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~ 226 (617)
+++|+.|++++ + .++. +..+...+++|++|+++++ .++. +. -...+++|++|++++| .++. ..+..+
T Consensus 18 ~~~L~~L~l~~--n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~--~~-~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRG--Y-KIPV--IENLGATLDQFDAIDFSDN-EIRK--LD-GFPLLRRLKTLLVNNN-RICRIGEGLDQAL 87 (176)
T ss_dssp TTSCEEEECTT--S-CCCS--CCCGGGGTTCCSEEECCSS-CCCE--EC-CCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred cCCceEEEeeC--C-CCch--hHHhhhcCCCCCEEECCCC-CCCc--cc-ccccCCCCCEEECCCC-cccccCcchhhcC
Confidence 44555566542 2 3331 1223333346666666665 3433 11 1234566667777666 3433 223566
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHH--HHHHHHhcCCCCCEEEccCCC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPI--TISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~l~~~~~~~~~L~~L~l~~c~ 289 (617)
++|++|++++| .+++-.-......+++|++|++++|.++.. .-..++..+++|+.|+++++.
T Consensus 88 ~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 88 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777777666 333211011234567777777777654321 112345667888888887765
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.6e-09 Score=102.61 Aligned_cols=174 Identities=13% Similarity=0.061 Sum_probs=81.3
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
++++.|+++++....... ...+++|++|+++++. ++... ......+++|++|++++ + .++. +. ....++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~--l~--~~~~~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIH-EKAFSPLRKLQKLYISK--N-HLVE--IP--PNLPSS 124 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-GGGSTTCTTCCEEECCS--S-CCCS--CC--SSCCTT
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccC-HhHhhCcCCCCEEECCC--C-cCCc--cC--cccccc
Confidence 456666666654332111 1245566666666554 33210 11223456666666642 2 2321 00 011245
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-----HHHhc--------------------CcCCCeeccc
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-----VALGN--------------------VLSVRFLSVA 235 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-----~~l~~--------------------~~~L~~L~l~ 235 (617)
|++|+++++ .++.-. ......+++|++|++++| .++. ..+.. .++|++|+++
T Consensus 125 L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 125 LVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201 (332)
T ss_dssp CCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCC
T ss_pred CCEEECCCC-ccCccC-HhHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECC
Confidence 666666555 332110 011234455666666555 2221 11122 2466666666
Q ss_pred CCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 236 GTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 236 ~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+| .++... ......+++|++|++++|.++... +..+..+++|+.|++++|.+.
T Consensus 202 ~n-~i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 202 HN-KIQAIE-LEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SS-CCCCCC-TTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSCCC
T ss_pred CC-cCCccC-HHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCcCe
Confidence 65 222111 011245677888888777654321 123456778888888877644
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=9.1e-06 Score=72.36 Aligned_cols=124 Identities=11% Similarity=0.214 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC---CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCC
Q 007131 142 TLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC---PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNV 218 (617)
Q Consensus 142 ~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~---~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 218 (617)
.+..+....+.|+.|+|+ ++..+++.+...++..+ ..|++|+|++| .+++.+...+++
T Consensus 32 ~l~~ll~~n~~L~~L~L~--~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~---------------- 92 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNIN--NMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIE---------------- 92 (197)
T ss_dssp HHHHHHTTCSSCCEEECT--TCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHH----------------
T ss_pred HHHHHHhcCCCccEEECC--CCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHH----------------
Confidence 355555555566666663 22355555555444322 35555555555 555555433331
Q ss_pred CHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcC---CCCCeEEeccC---CCCHH---HHHHHHhcCCCCCEEEccCC
Q 007131 219 DEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL---PKLVGLDVSRT---DVGPI---TISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 219 ~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~---~~L~~L~l~~~---~~~~~---~l~~~~~~~~~L~~L~l~~c 288 (617)
.+..-+.|++|++++| .|++.+...++..+ +.|++|+++++ .+++. .+.+.+..-+.|+.|+++.+
T Consensus 93 ---aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 93 ---LIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp ---HHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred ---HHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 1122244555555554 45555555544322 34666666532 44543 24444555566777766644
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-08 Score=94.45 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=104.2
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
++++.|+++++....... ...+++|++|+++++. ++.. .......+++|+.|+|++ + .++.... .....+++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~--n-~l~~~~~-~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTL-SAGVFDDLTELGTLGLAN--N-QLASLPL-GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECTT--S-CCCCCCT-TTTTTCTT
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCcc-CHhHhccCCcCCEEECCC--C-cccccCh-hHhcccCC
Confidence 579999999986654222 2368999999999986 4431 112235689999999963 3 4542211 12245799
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++
T Consensus 109 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~ 183 (251)
T 3m19_A 109 LDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVP-HGAFDRLGKLQT 183 (251)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCE
T ss_pred CCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccC-HHHHhCCCCCCE
Confidence 999999998 554211 112346799999999998 4443 35788999999999998 343211 123456899999
Q ss_pred EEeccCCCC
Q 007131 258 LDVSRTDVG 266 (617)
Q Consensus 258 L~l~~~~~~ 266 (617)
|++++|.++
T Consensus 184 L~l~~N~~~ 192 (251)
T 3m19_A 184 ITLFGNQFD 192 (251)
T ss_dssp EECCSCCBC
T ss_pred EEeeCCcee
Confidence 999998764
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-08 Score=111.39 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=47.9
Q ss_pred cCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHH-------HHHHhcCCCCCeEEeccCCCCHHHHHH
Q 007131 203 LCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVV-------SQVWHKLPKLVGLDVSRTDVGPITISR 272 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l-------~~l~~~~~~L~~L~l~~~~~~~~~l~~ 272 (617)
.+++|++|++++|. ++ +..+..+++|++|++++| .++...- .....++++|+.|++++|.++.-. ..
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~ 554 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VE 554 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC-TT
T ss_pred cCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC-HH
Confidence 45667777776662 32 234566677777777765 2321100 001345677777777776655211 12
Q ss_pred HHhcCCCCCEEEccCCCCC
Q 007131 273 LLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 273 ~~~~~~~L~~L~l~~c~~~ 291 (617)
.+.++++|+.|++++|...
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp TTTTCTTCCEEECCSSCCC
T ss_pred HcccccCcceeECCCCCCC
Confidence 3456777777777777544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.8e-06 Score=74.16 Aligned_cols=89 Identities=10% Similarity=0.247 Sum_probs=68.0
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHh---cCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHH
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVA---RHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDA 196 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~---~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~ 196 (617)
..+.|++|+|+++..+.+.+...++. ....|+.|+|+ +| .+++.+...++. .-+.|++|+|+++ .|++.+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~--~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA--NT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT--TS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc--CC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 67899999999875699988666654 55689999996 34 899998877664 3478999999998 899999
Q ss_pred HHHHHhcC---CCCceEeecCC
Q 007131 197 INALAKLC---PNLTDIGFLDC 215 (617)
Q Consensus 197 l~~l~~~~---~~L~~L~l~~~ 215 (617)
...+++.+ +.|++|+++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 88887442 34666666543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=98.84 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=140.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++.+.+.++.+|..|+.+|..+....... ..-.-.+.++.++.++.+++++++..|+.+|..++.....
T Consensus 177 ~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~--------~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 177 PKFLQFFKHSSPKIRSHAVACVNQFIISRTQA--------LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp HHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH--------HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 78888888889999999999999875432111 0011235678888889889999999999999999874321
Q ss_pred H--HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHH-------HH-------------------------
Q 007131 462 A--KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA-------IA------------------------- 507 (617)
Q Consensus 462 ~--~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~-------i~------------------------- 507 (617)
. ..+ .+.++.++.++.+.+++++..|+.++..++.....+.. ++
T Consensus 249 ~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 249 RLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 1 111 12467777788888888888888888887753211110 00
Q ss_pred --------------------------hcCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHH
Q 007131 508 --------------------------DAGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALV 560 (617)
Q Consensus 508 --------------------------~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~ 560 (617)
....++.++..+.. -.+.+..++..|+.+|.+++........-.-.+.++.++
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 00112222222221 134567888888888888886543211111234567788
Q ss_pred HHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 561 MLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 561 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
.++.+++ +.++..|+++|.+++....... ....-.+.++.|++.+.++++.|
T Consensus 407 ~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~---~~~~~~~ll~~L~~~L~d~~~~v 458 (852)
T 4fdd_A 407 QCLSDKK-ALVRSITCWTLSRYAHWVVSQP---PDTYLKPLMTELLKRILDSNKRV 458 (852)
T ss_dssp HHTTCSS-HHHHHHHHHHHHHTHHHHHHSC---TTTTHHHHHHHHHHHHTCSSHHH
T ss_pred HHcCCCC-HHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHhCCCHHH
Confidence 8887764 8999999999999987422110 11112467888888887765544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-08 Score=91.54 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=69.5
Q ss_pred cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcC
Q 007131 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLS 228 (617)
Q Consensus 149 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 228 (617)
.+++|+.|++++ + .++. +..+ ..+++|++|+++++ .++. +......+++|++|++++|..-+-..+..+++
T Consensus 46 ~l~~L~~L~ls~--n-~l~~--l~~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~ 116 (198)
T 1ds9_A 46 TLKACKHLALST--N-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIASLSGIEKLVN 116 (198)
T ss_dssp HTTTCSEEECSE--E-EESC--CCCH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred cCCCCCEEECCC--C-CCcc--cccc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence 356666666642 2 2222 1111 23566666666665 3331 22223334677777777763333345666777
Q ss_pred CCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHH---------HHHHHHhcCCCCCEEE
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPI---------TISRLLTSSKSLKVLC 284 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---------~l~~~~~~~~~L~~L~ 284 (617)
|++|++++| .+++-........+++|++|++++|.++.. ....++..+++|+.|+
T Consensus 117 L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777777776 344322222345677788888877654322 2234567788888887
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.3e-08 Score=109.02 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=48.3
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
.+++|++|++++| .++. ..+..+++|++|++++|. ++... ......+++|++|++++|.++... +..+.++++
T Consensus 288 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~ 363 (844)
T 3j0a_A 288 TLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNL-LGELY-SSNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEK 363 (844)
T ss_dssp SCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCC-CSCCC-SCSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCC
T ss_pred cCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCC-CCccC-HHHhcCCCCCCEEECCCCCCCccC-hhhhcCCCC
Confidence 4566666666665 3332 345666777777777662 22110 112245677777777776553221 123456788
Q ss_pred CCEEEccCCCCC
Q 007131 280 LKVLCALNCPVL 291 (617)
Q Consensus 280 L~~L~l~~c~~~ 291 (617)
|+.|++++|.+.
T Consensus 364 L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 364 LQTLDLRDNALT 375 (844)
T ss_dssp CCEEEEETCCSC
T ss_pred CCEEECCCCCCC
Confidence 888888887654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=100.45 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=78.9
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcH-HHHHHHHhcCCCCceEeecCCCCCCH----HH
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDE----VA 222 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~----~~ 222 (617)
..+++|++|++++ + .+++..... ...+++|++|+++++ .++. ..+......+++|++|++++|. ++. ..
T Consensus 350 ~~l~~L~~L~l~~--n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQ--N-VFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCS--S-CCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCC
T ss_pred cCCCCceEEECCC--C-ccccchhhh-hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhh
Confidence 3567777777752 3 444321111 234677888888877 4543 1223334466788888888773 332 23
Q ss_pred HhcCcCCCeecccCCCCCCHHHHHHHHhcC-CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 223 LGNVLSVRFLSVAGTSNMKWGVVSQVWHKL-PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 223 l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+..+++|++|++++| .++.. +...+ ++|+.|++++|.++ .++.-+..+++|+.|++++|.+.
T Consensus 424 ~~~l~~L~~L~l~~n-~l~~~----~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 424 CAWAESILVLNLSSN-MLTGS----VFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCTTCCEEECCSS-CCCGG----GGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCC
T ss_pred hcCcccCCEEECCCC-CCCcc----hhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCC
Confidence 566778888888876 34432 22334 57888888887765 23333336788888888887755
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-08 Score=98.02 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+++++...... ....+++|++|+++++. ++... ......+++|++|++++ + .++...... ...+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~--n-~l~~~~~~~-~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTG--N-PIQSLALGA-FSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEEC-TTTTTTCTTCCEEECTT--C-CCCEECTTT-TTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccC-HHHccCCcCCCEEECCC--C-ccCccChhh-hcCCcc
Confidence 47999999988665322 22367899999999985 43211 11235688999999963 3 444322112 234789
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCH---HHHHHHHhcCCC
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKW---GVVSQVWHKLPK 254 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~---~~l~~l~~~~~~ 254 (617)
|++|+++++ .++.-.-. ....+++|++|++++|...+ ...+..+++|++|++++| .++. ..+..+ ..++.
T Consensus 102 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L~~ 177 (276)
T 2z62_A 102 LQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVL-HQMPL 177 (276)
T ss_dssp CCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHH-HTCTT
T ss_pred ccEEECCCC-CccccCch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhh-hhccc
Confidence 999999987 44321111 13467899999999984322 356788999999999997 3432 222222 23444
Q ss_pred CC-eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 255 LV-GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 255 L~-~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|. +|+++++.++... ... ....+|+.|++++|.+..
T Consensus 178 l~l~L~ls~n~l~~~~-~~~-~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQ-PGA-FKEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCEEEECCSSCCCEEC-TTS-SCSCCEEEEECCSSCCSC
T ss_pred cceeeecCCCcccccC-ccc-cCCCcccEEECCCCceee
Confidence 44 8999998765321 111 234589999999987543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.5e-06 Score=91.86 Aligned_cols=211 Identities=15% Similarity=0.091 Sum_probs=146.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+..++..+++.+|..|+.+|..++..... .......++.+..++.++++.+|..|+.+|..++..-..
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----------DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----------HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----------HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 7777777888999999999999998744321 233456788999999999999999999999998863221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
. . .....++.+..++.+.+..++..|+.+|..++..... .......++.++.++. +.++.++..|+.+|..++
T Consensus 237 ~-~-~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 237 E-D-LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMK---DCEAEVRAAASHKVKEFC 309 (588)
T ss_dssp H-H-HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHT---CSSHHHHHHHHHHHHHHH
T ss_pred H-H-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhC---CCcHHHHHHHHHHHHHHH
Confidence 1 1 1233578888888888999999999999999753211 1123356888888884 578899999999999998
Q ss_pred cCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 542 ADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 542 ~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
..-.. +........++.+..++.+.+ ..++..|+.+|..++..-.. .. .....++.+..++++++++|
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~~-~~vR~~a~~~l~~l~~~~~~-----~~-~~~~l~p~l~~~l~d~~~~V 379 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK-----DN-TIEHLLPLFLAQLKDECPEV 379 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH-----HH-HHHHTHHHHHHHHTCSCHHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhhH-----hH-HHHHHHHHHHHHhCCCchHH
Confidence 54322 221223356677777777664 78888888888877642111 00 11234566666666655444
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-08 Score=111.59 Aligned_cols=179 Identities=11% Similarity=-0.040 Sum_probs=100.6
Q ss_pred CCceEEEecCCCCccHHH--HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSII--HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+|+++....... ...+++|++|+++++..+.... ......+++|++|+|+ ++ .++..... ....+++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls--~N-~l~~~~p~-~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLG--SS-KIYFLHPD-AFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECT--TC-CCCEECTT-SSCSCSS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECC--CC-cCcccCHh-HccCCcc
Confidence 578888888876543211 2267888888888874322100 1223567888888885 23 44322111 1234778
Q ss_pred CCeeeccCccCCcHHHHHH-HHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCC--CCHHHHHHHHhcCCC
Q 007131 181 LKKLRLSGIRDICGDAINA-LAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSN--MKWGVVSQVWHKLPK 254 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~-l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~--i~~~~l~~l~~~~~~ 254 (617)
|++|+|++| .+++..... ....+++|++|++++|...+. ..+..+++|++|++++|.- +....+..+.. ++
T Consensus 99 L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~ 175 (844)
T 3j0a_A 99 LFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KT 175 (844)
T ss_dssp CCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CS
T ss_pred cCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--Cc
Confidence 888888887 454321111 134568888888888743221 3567788888888888632 11233333321 67
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCC------CCCEEEccCCCC
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSK------SLKVLCALNCPV 290 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~------~L~~L~l~~c~~ 290 (617)
|+.|++++|.++... +..+..++ .|+.|++++|..
T Consensus 176 L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 176 LSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp SCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred cceEECCCCcccccc-ccchhhcCCccccCceeEEecCCCcC
Confidence 777777776543311 11111222 377777777743
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=98.24 E-value=3e-08 Score=93.50 Aligned_cols=176 Identities=12% Similarity=0.005 Sum_probs=114.1
Q ss_pred HhCCCceEEEecCCC-CccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 100 SRCMNLQKLRFRGAE-SADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
..+++|++|+++++. ...-. ....+++|++|++++|..++... ......+++|+.|++++ + .++. +.. ..
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~--n-~l~~--lp~-~~ 124 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFN--T-GLKM--FPD-LT 124 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEE--E-CCCS--CCC-CT
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCC--C-CCcc--ccc-cc
Confidence 347899999999986 33211 12378999999999844454311 12234689999999973 3 3432 222 23
Q ss_pred cCCCCC---eeeccCccCCcHHHHHHHHhcCCCCc-eEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHH
Q 007131 177 CCPKLK---KLRLSGIRDICGDAINALAKLCPNLT-DIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVW 249 (617)
Q Consensus 177 ~~~~L~---~L~l~~~~~i~~~~l~~l~~~~~~L~-~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~ 249 (617)
.+++|+ +|+++++..++.-. ......+++|+ +|++++| .++. ..+.. ++|++|++++|..++.-. ....
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~-~~~~ 200 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNKNKYLTVID-KDAF 200 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTTCTTCCEEC-TTTT
T ss_pred cccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCCCCCcccCC-HHHh
Confidence 467787 99999873333211 11224678999 9999998 4543 23344 799999999985454211 1223
Q ss_pred hcC-CCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 250 HKL-PKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 250 ~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
.++ ++|+.|++++|.++.- +. ..+++|+.|++.++..
T Consensus 201 ~~l~~~L~~L~l~~N~l~~l--~~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTSVTAL--PS--KGLEHLKELIARNTWT 238 (239)
T ss_dssp TTCSBCCSEEECTTCCCCCC--CC--TTCTTCSEEECTTC--
T ss_pred hccccCCcEEECCCCccccC--Ch--hHhccCceeeccCccC
Confidence 567 9999999999876532 11 1588999999998753
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-07 Score=98.11 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=97.1
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
++|++|+|+++.+.. ++ ..+++|++|+++++. ++. +.. . ..+|+.|+|+. + .++. +.. .+++|+
T Consensus 80 ~~L~~L~Ls~N~l~~-ip-~~l~~L~~L~Ls~N~-l~~--ip~-l--~~~L~~L~Ls~--N-~l~~--lp~---~l~~L~ 143 (571)
T 3cvr_A 80 PQITVLEITQNALIS-LP-ELPASLEYLDACDNR-LST--LPE-L--PASLKHLDVDN--N-QLTM--LPE---LPALLE 143 (571)
T ss_dssp TTCSEEECCSSCCSC-CC-CCCTTCCEEECCSSC-CSC--CCC-C--CTTCCEEECCS--S-CCSC--CCC---CCTTCC
T ss_pred CCCCEEECcCCCCcc-cc-cccCCCCEEEccCCC-CCC--cch-h--hcCCCEEECCC--C-cCCC--CCC---cCcccc
Confidence 567777777775542 22 456778888887775 332 211 1 22788888852 2 4433 111 467888
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHH-H-HHHHhcCCCCCeEE
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGV-V-SQVWHKLPKLVGLD 259 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~-l-~~l~~~~~~L~~L~ 259 (617)
.|+++++ .++. +. ..+++|++|++++|. ++. ..+. ++|++|++++| .++.-. + ..+....+.|+.|+
T Consensus 144 ~L~Ls~N-~l~~--lp---~~l~~L~~L~Ls~N~-L~~lp~l~--~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 144 YINADNN-QLTM--LP---ELPTSLEVLSVRNNQ-LTFLPELP--ESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFR 213 (571)
T ss_dssp EEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSCCCCCC--TTCCEEECCSS-CCSSCCCCC--------CCEEEE
T ss_pred EEeCCCC-ccCc--CC---CcCCCcCEEECCCCC-CCCcchhh--CCCCEEECcCC-CCCchhhHHHhhhcccccceEEe
Confidence 8888877 4542 21 145788888888873 433 1122 78888988887 343100 0 01112223349999
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+++|.++. ++..+..+++|+.|++++|++.+..
T Consensus 214 Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 214 CRENRITH--IPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 99987763 4444445899999999999865543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-08 Score=90.51 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=7.3
Q ss_pred cCCCCCEEEccCCCC
Q 007131 276 SSKSLKVLCALNCPV 290 (617)
Q Consensus 276 ~~~~L~~L~l~~c~~ 290 (617)
.+++|+.|++++|+.
T Consensus 146 ~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPW 160 (208)
T ss_dssp TCTTCCEEECCSCCB
T ss_pred cCCCccEEEecCCCe
Confidence 344555555555443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=86.11 Aligned_cols=209 Identities=17% Similarity=0.024 Sum_probs=143.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+..++..+++.++..|+.+|.+++..... .......++.+.++..+++...|..|+.++..++..-..
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~----------~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~ 159 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSP----------SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS 159 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH----------HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH
Confidence 6666666778899999999999998744321 122334566677777777888999999999988764221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
. . ....++.+..++.++++.++..|+.+|..++...... ......+|.+..++. +++..++..|+.+|..++
T Consensus 160 ~--~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~---d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 160 A--V-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLAS---DEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp H--H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHT---CSCHHHHTTHHHHHHHHH
T ss_pred H--H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHH
Confidence 1 1 1223677888888899999999999999998543221 122356777888774 567889999999999887
Q ss_pred cCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 542 ADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 542 ~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
..-+.. ......++.+..++.+++ ..++..|+.+|..++...+. .......++.+..++++++++||
T Consensus 232 ~~~~~~--~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vr 298 (588)
T 1b3u_A 232 QLLPQE--DLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP------EITKTDLVPAFQNLMKDCEAEVR 298 (588)
T ss_dssp HHSCHH--HHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH------HHHHHTHHHHHHHHHTCSSHHHH
T ss_pred HhCCHH--HHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc------ccchhHHHHHHHHHhCCCcHHHH
Confidence 532221 122346677777777654 78999999999998863221 11124567888888877665543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-07 Score=95.28 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=15.0
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCR 136 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 136 (617)
++|++|+++++.... +....++|++|+++++.
T Consensus 91 ~~L~~L~l~~n~l~~--lp~~~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LPELPQSLKSLLVDNNN 122 (454)
T ss_dssp TTCSEEECCSSCCSS--CCCCCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCc--cccccCCCcEEECCCCc
Confidence 455666665554332 11123455555555543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.8e-07 Score=87.43 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=69.0
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
.+++|++|+|+++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++ .+..-...++
T Consensus 62 ~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~ 135 (229)
T 3e6j_A 62 SLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLT--ELPRGIERLT 135 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCC--SCCTTGGGCT
T ss_pred CccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-ccc--ccCcccccCC
Confidence 3566666666665 332110 012235677777777777 3332 33567788888888876 343 1222236788
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
+|++|++++|.++.-. ...+..+++|+.|++++|+...+.
T Consensus 136 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 136 HLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCccCCc
Confidence 8999999888765321 234567889999999999866554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-07 Score=86.30 Aligned_cols=150 Identities=12% Similarity=0.078 Sum_probs=100.0
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
..++|++|+++++. ++.. .......+++|++|++++ + .++... ......+++|++|+++++ .++.-. .....
T Consensus 26 ~~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~--n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~ 97 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGG--N-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLP-NGVFD 97 (208)
T ss_dssp CCTTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCS--S-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTT
T ss_pred CCCCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCC--C-ccCccC-hhhcCCCCCcCEEECCCC-cCCccC-HhHhc
Confidence 35789999999986 4421 122345689999999963 3 454211 112245799999999988 554211 11234
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
.+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.+. ..+++
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~--------~~~~~ 166 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNPWD--------CTCPG 166 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSCCBC--------CCTTT
T ss_pred CccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeC-HHHhccCCCccEEEecCCCee--------cCCCC
Confidence 6799999999998 3443 34678999999999997 343211 123456899999999998654 24667
Q ss_pred CCEEEccCCCCC
Q 007131 280 LKVLCALNCPVL 291 (617)
Q Consensus 280 L~~L~l~~c~~~ 291 (617)
|+.|+++.+...
T Consensus 167 l~~L~~~~n~~~ 178 (208)
T 2o6s_A 167 IRYLSEWINKHS 178 (208)
T ss_dssp THHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 777776665433
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-07 Score=87.97 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
.+++|++|+++++ .++.-.- .....+++|++|++++|. ++ ...+..+++|++|++++| .++... ......++
T Consensus 55 ~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~ 129 (220)
T 2v70_A 55 KLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSN-RITCVG-NDSFIGLS 129 (220)
T ss_dssp GCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTS-CCCCBC-TTSSTTCT
T ss_pred cCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCC-cCCeEC-HhHcCCCc
Confidence 4677777777766 3432110 122356788888888873 33 244677888888888887 333111 11234678
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
+|++|++++|.++... +..+..+++|+.|++++|+...+....
T Consensus 130 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 130 SVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred cCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 8999999998765432 344567899999999999877666533
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.9e-08 Score=97.66 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=91.7
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
+.++.|+|+++. ++......+...+++|+.|+|+. + .++...... ...+++|++|+|+++ .++.-. ......+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~--N-~i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSH--N-HLNFISSEA-FVPVPNLRYLDLSSN-HLHTLD-EFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCS--S-CCCEECTTT-TTTCTTCCEEECCSS-CCCEEC-TTTTTTC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCC--C-cCCccChhh-ccCCCCCCEEECCCC-cCCcCC-HHHhCCC
Confidence 445666666654 33211111111566777777742 2 343211111 234677888888877 443211 1123456
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEeccCCCCHHHHHHHHhcCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDVSRTDVGPITISRLLTSSK 278 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 278 (617)
++|++|++++| .++. ..+..+++|++|++++| .++.-. ..+. ..+++|++|++++|.++.-. ...+..++
T Consensus 112 ~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~ 187 (361)
T 2xot_A 112 QALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFP-VELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLP 187 (361)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCC-GGGTC----CTTCCEEECCSSCCCCCC-HHHHHHSC
T ss_pred cCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeC-HHHhcCcccCCcCCEEECCCCCCCccC-HHHhhhcc
Confidence 88888888887 3443 45677888888888887 343211 0111 45789999999998765322 12334466
Q ss_pred C--CCEEEccCCCCCChhHHH
Q 007131 279 S--LKVLCALNCPVLEEENNI 297 (617)
Q Consensus 279 ~--L~~L~l~~c~~~~~~~~~ 297 (617)
. ++.|++.+|+..-+....
T Consensus 188 ~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 188 AWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp HHHHTTEECCSSCEECCHHHH
T ss_pred HhhcceEEecCCCccCCcCcH
Confidence 5 478999999877666543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.15 E-value=2.6e-07 Score=82.40 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=82.0
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
.+++|++|+++++ .++. +..+....|+|++|++++| .+++ ..+..+++|++|++++| .++.-. ..+...+++|
T Consensus 17 ~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIG-EGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTTC
T ss_pred CcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccC-cchhhcCCCC
Confidence 4689999999998 5653 3445556679999999999 4554 56778899999999998 454211 2334679999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++|++++|.++.-.-...+..+++|+.|++++|++..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence 9999999988542211245679999999999998653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=73.89 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=131.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhccc--
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK-SWREGLQSEAAKAIANLSVN-- 458 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~ls~~-- 458 (617)
+.+.+.+.+.+...|..|+..|..+......... .. + ...++.|...+. +.+..++..|+.++..|+..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~----~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GE----Y--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CC----C--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CC----H--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 4577888899999999999999998765322110 00 1 234677888884 88999999999999999962
Q ss_pred hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 459 AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 459 ~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.....+ ...++.+++.+.+.++.+++.|..+|.++....... ..++.+...+. +.++.++..++.+|.
T Consensus 90 ~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~---~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 90 KRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLS---NKNPSVKSETALFIA 158 (242)
T ss_dssp GGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred hhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc---CCChHHHHHHHHHHH
Confidence 2221211 224788999999999999999999999997654321 24566777774 468899999999999
Q ss_pred Hhc-cCCCc---hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 539 NLA-ADDKC---SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 539 ~l~-~~~~~---~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+. ..++. ...+ . ..++.++.++.+.. .+++..|..++..++.
T Consensus 159 ~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 159 RALTRTQPTALNKKLL-K-LLTTSLVKTLNEPD-PTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHTTCCGGGCCHHHH-H-HHHHHHHHHHTSSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccHHHH-H-HHHHHHHHHhcCCC-hHHHHHHHHHHHHHHH
Confidence 964 43222 2222 2 46788999998775 8999999999999885
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-07 Score=98.49 Aligned_cols=160 Identities=14% Similarity=0.125 Sum_probs=107.9
Q ss_pred CCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 007131 102 CMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKL 181 (617)
Q Consensus 102 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L 181 (617)
+++++.|+++++.... ++...+++|++|+++++. ++. +. ..+++|+.|++++ + .++. +.. ...+|
T Consensus 58 ~~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~--N-~l~~--ip~---l~~~L 122 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS-LPDNLPPQITVLEITQNA-LIS--LP---ELPASLEYLDACD--N-RLST--LPE---LPASL 122 (571)
T ss_dssp HTTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCS--S-CCSC--CCC---CCTTC
T ss_pred cCCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccC--C-CCCC--cch---hhcCC
Confidence 4589999999986654 333246899999999986 542 22 4578999999963 3 5543 222 12399
Q ss_pred CeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEec
Q 007131 182 KKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 182 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~ 261 (617)
++|+++++ .++. +.. .+++|+.|++++| .++.-. ..+++|++|++++|. ++. +..+ .++|++|+++
T Consensus 123 ~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~lp-~~l~~L~~L~Ls~N~-L~~--lp~l---~~~L~~L~Ls 188 (571)
T 3cvr_A 123 KHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTMLP-ELPTSLEVLSVRNNQ-LTF--LPEL---PESLEALDVS 188 (571)
T ss_dssp CEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSCCC-CCCTTCCEEECCSSC-CSC--CCCC---CTTCCEEECC
T ss_pred CEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCcCC-CcCCCcCEEECCCCC-CCC--cchh---hCCCCEEECc
Confidence 99999998 5543 222 5789999999998 444311 157899999999983 432 1221 2899999999
Q ss_pred cCCCCHHHHHH----HHhcCCCCCEEEccCCCCCC
Q 007131 262 RTDVGPITISR----LLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 262 ~~~~~~~~l~~----~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|.++ .++. +....+.|+.|++++|.+..
T Consensus 189 ~N~L~--~lp~~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 189 TNLLE--SLPAVPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp SSCCS--SCCCCC--------CCEEEECCSSCCCC
T ss_pred CCCCC--chhhHHHhhhcccccceEEecCCCccee
Confidence 98776 2222 11222334999999998654
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.9e-06 Score=91.76 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=137.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...+..++++++..|+.+|..++....... .. .-.+.++.++..+.+.++.++..|+..+..++.....
T Consensus 218 ~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~-------~~-~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~ 289 (852)
T 4fdd_A 218 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL-------LP-HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC 289 (852)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH-------GG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH-------HH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH
Confidence 677777778889999999999999875432211 00 0124567777777777888888888777777642111
Q ss_pred HH-------------------------------------------------------HHHH-------hCCHHHHHHHHh
Q 007131 462 AK-------------------------------------------------------AVAE-------EGGINILAVLAR 479 (617)
Q Consensus 462 ~~-------------------------------------------------------~i~~-------~~~i~~L~~lL~ 479 (617)
+. .+.. ...++.+.+.+.
T Consensus 290 ~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 290 KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 369 (852)
T ss_dssp HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 00 0000 012345555666
Q ss_pred cCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC--chHHHHHhCCHH
Q 007131 480 SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK--CSMEVALAGGVH 557 (617)
Q Consensus 480 ~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~i~~~~~~~ 557 (617)
+.+..+++.|+.+|.+++........-.-.+.++.++..+. +.++.++..|++++.+++..-. ..... -.+.++
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~ll~ 445 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS---DKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMT 445 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHTHHHHHHSCTTTT-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHH
Confidence 78889999999999999976532211112456777888884 5788999999999999985311 11111 124567
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 558 ALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 558 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
.|++.+.+++ +.++..|+++|.+++..... .... .-.+.++.|+.+++.
T Consensus 446 ~L~~~L~d~~-~~vr~~a~~aL~~l~~~~~~---~l~~-~l~~ll~~L~~~l~~ 494 (852)
T 4fdd_A 446 ELLKRILDSN-KRVQEAACSAFATLEEEACT---ELVP-YLAYILDTLVFAFSK 494 (852)
T ss_dssp HHHHHHTCSS-HHHHHHHHHHHHHHHHHHGG---GGGG-GHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHHHHHhhH---hhHh-HHHHHHHHHHHHHHH
Confidence 7888887664 89999999999999864332 1111 124566666666653
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-07 Score=86.71 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+|+++ .++.-. ......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++
T Consensus 55 l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~ 129 (220)
T 2v9t_B 55 YKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNAN-KINCLR-VDAFQDLHN 129 (220)
T ss_dssp CTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCC-CCCEeC-HHHcCCCCC
Confidence 567777777766 443210 1112345778888887773 332 33567788888888876 333211 112346788
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHH
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENN 296 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~ 296 (617)
|++|++++|.++... +..+..+++|+.|++++|+..-+..+
T Consensus 130 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 130 LNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 888888887664322 23345688999999999987665543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=70.87 Aligned_cols=183 Identities=16% Similarity=0.100 Sum_probs=138.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh-
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK- 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~- 460 (617)
..+.++++..++.++.+|+.+|..+-...+... +...-...++.+++++++.|+.+...|+++|..|-.+.+
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l-------~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKRADSDL-------RMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH-------HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccccc-------cHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 788899999999999999999999875543322 344556778999999999999999999999999988433
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
....+.+. +..|..+++++++-..++|+..|..+..-...+ +.+..+..++ .+.+.+++..++.++-++
T Consensus 109 ~~~~y~Kl--~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl---~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 109 GSKTFLKA--AKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELV---VSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp CHHHHHHH--HHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHH---TCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHH---hCCChhHHHHHHHHHHHh
Confidence 33344332 567889999999999999999999994322222 2345567777 478999999999999999
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 541 AADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
+...+....+ .+.+.-+-.++.+.+ +.+++.|..+|..+...
T Consensus 178 a~~S~D~~i~--~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 178 LNSSADSGHL--TLILDEIPSLLQNDN-EFIVELALDVLEKALSF 219 (265)
T ss_dssp GGGCSSCCCG--GGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTS
T ss_pred hcccCCHHHH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC
Confidence 9644332211 134455677888875 89999999999999874
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-06 Score=92.02 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=43.3
Q ss_pred CCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 205 PNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
++|+.|++++| .++.-. ..+++|++|++++| .++. +...+++|+.|++++|.++. ++. .+++|+.|+
T Consensus 201 ~~L~~L~L~~N-~l~~l~-~~~~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~ 267 (622)
T 3g06_A 201 SELYKLWAYNN-RLTSLP-ALPSGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNRLTS--LPM---LPSGLLSLS 267 (622)
T ss_dssp TTCCEEECCSS-CCSSCC-CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred chhhEEECcCC-cccccC-CCCCCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCCCCCc--CCc---ccccCcEEe
Confidence 45555555554 222100 12367777777776 3432 12556778888888876652 222 567888888
Q ss_pred ccCCCCC
Q 007131 285 ALNCPVL 291 (617)
Q Consensus 285 l~~c~~~ 291 (617)
+++|.+.
T Consensus 268 Ls~N~L~ 274 (622)
T 3g06_A 268 VYRNQLT 274 (622)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 8887655
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.4e-07 Score=84.00 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccC
Q 007131 39 DWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLD 84 (617)
Q Consensus 39 ~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~ 84 (617)
.|+.||+|++.+||+||+.+|+++++.|||+|+.++.++.+|+.+-
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l 49 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFL 49 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3788999999999999999999999999999999999999997553
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.7e-07 Score=75.65 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=89.3
Q ss_pred HhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHH
Q 007131 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG 504 (617)
Q Consensus 425 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~ 504 (617)
.....++.++.+|+++++.+|..|+.+|..+.. ..++.|+++|+++++.++..|+.+|.++..
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 455677889999999899999999888876632 136889999999999999999999999863
Q ss_pred HHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 505 AIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 505 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.++++.|+.++.+ .++.++..|+++|..+.. ...++.|..++.+++ ..++..|+.+|..|
T Consensus 72 ----~~a~~~L~~~L~d---~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~-~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLED---DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT-GFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHH---CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC-THHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHhC
Confidence 1358889999964 778999999999998852 235788888887664 79999999888653
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-06 Score=92.14 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=122.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++++.+++..+++-+..++..++....+ + -.-.+..+.+-|.++++.+|..|+.+|+++. .++.
T Consensus 52 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e-----------~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~ 118 (591)
T 2vgl_B 52 PDVVNCMQTDNLELKKLVYLYLMNYAKSQPD-----------M-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKI 118 (591)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH-----------H-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccCch-----------H-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHH
Confidence 6778888999999999998888887543211 1 1234567777788889999999999999986 3433
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.+.+ ++.+.++|.+.++.++..|+.++.++.. +++.. .+.+.++.+..+| .+.++.++.+|+.+|..+
T Consensus 119 ~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL---~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 119 TEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLI---ADSNPMVVANAVAALSEI 187 (591)
T ss_dssp HHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTT---SCSCHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHh---CCCChhHHHHHHHHHHHH
Confidence 3333 4678899999999999999999999975 33322 2246778888888 457889999999999999
Q ss_pred ccCCCch-HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 541 AADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 541 ~~~~~~~-~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
+..++.. ..-...+.+..|+..+.+.+ +..+.....+|..++
T Consensus 188 ~~~~~~~~~~~l~~~~~~~Ll~~l~~~~-~~~q~~il~~l~~l~ 230 (591)
T 2vgl_B 188 SESHPNSNLLDLNPQNINKLLTALNECT-EWGQIFILDCLSNYN 230 (591)
T ss_dssp TTSCCSCCSCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHTSC
T ss_pred HhhCCCccchhccHHHHHHHHHcCCCCC-chHHHHHHHHHHHhC
Confidence 9765422 00011123444555554443 555555555555554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-07 Score=103.64 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=70.7
Q ss_pred hcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcC
Q 007131 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKL 252 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 252 (617)
..+++|+.|+++++.... .........+++|++|++++| .++. ..+..+++|++|++++| .++.-. .....++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l 541 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD-TFPYKCL 541 (635)
T ss_dssp TTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCC-CGGGTTC
T ss_pred ccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCC-hhHHhCC
Confidence 346778888888763221 111122345678888888887 4443 45677888888888887 333211 1123567
Q ss_pred CCCCeEEeccCCCCHHHHHHHHhcC-CCCCEEEccCCCCCChhH
Q 007131 253 PKLVGLDVSRTDVGPITISRLLTSS-KSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 253 ~~L~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~~~~~~ 295 (617)
++|++|++++|.++... +..+..+ ++|++|++++|+..=+..
T Consensus 542 ~~L~~L~Ls~N~l~~~~-~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCCEEECTTSCCCBCC-SSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCEEECCCCcCCCCC-HHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 88888888887764332 2223344 578888888887665554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.9e-07 Score=99.27 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=96.5
Q ss_pred CCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcC
Q 007131 125 RNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLC 204 (617)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 204 (617)
+++++|+|+++. ++.-. ...+..+++|++|+|+ +| .++.-.- .....+++|++|+|+++ .++.-. ......+
T Consensus 52 ~~~~~LdLs~N~-i~~l~-~~~f~~l~~L~~L~Ls--~N-~i~~i~~-~~f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLS--RC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLA-LGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECT--TC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEEC-GGGGTTC
T ss_pred cCCCEEEeeCCC-CCCCC-HHHHhCCCCCCEEECC--CC-cCCCcCh-hHhcCCCCCCEEEccCC-cCCCCC-HHHhcCC
Confidence 478999998875 44311 1123468899999995 34 4442111 11234788999999987 444211 1123467
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCC---HHHHHHHHhcCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG---PITISRLLTSSK 278 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~ 278 (617)
++|++|++++|. ++. ..+..+++|++|++++| .++...+......+++|++|++++|.++ ...+..+-....
T Consensus 124 ~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 124 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCEEECCCCc-CCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 889999998883 433 34678889999999887 3332222334567888999999987653 333333333233
Q ss_pred CCCEEEccCCCCC
Q 007131 279 SLKVLCALNCPVL 291 (617)
Q Consensus 279 ~L~~L~l~~c~~~ 291 (617)
....++++.+.+.
T Consensus 202 ~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 202 LNLSLDLSLNPMN 214 (635)
T ss_dssp CCCEEECTTCCCC
T ss_pred hhhhhhcccCccc
Confidence 4556777777643
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-06 Score=88.14 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=26.2
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEc
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLG 159 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~ 159 (617)
++|++|+++++.... +....++|++|+++++. ++. +.. ...+++|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~--l~~~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA--LSDLPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVD 161 (454)
T ss_dssp TTCCEEECCSSCCSC--CCSCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECC
T ss_pred CCCcEEECCCCccCc--ccCCCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECC
Confidence 567777776664432 00112566666666654 322 111 3345666666664
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-06 Score=73.38 Aligned_cols=117 Identities=21% Similarity=0.089 Sum_probs=90.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.++.+|+++++.++..|+.+|..+. + ..++.|+++|+++++.+|..|+++|.++..
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~---~----------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMG---D----------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCS---S----------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC---c----------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 78888998888888888887777542 0 125899999999999999999999998763
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
.++++.|+.+|.++++.++..|+++|.++.. .++++.|+.++. +.++.++..|+.+|..+
T Consensus 72 ------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~---d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAE---TGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT---SCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHHHHHHHHHHhC
Confidence 1247899999999999999999999999862 246788999984 46788999999888653
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-05 Score=83.93 Aligned_cols=184 Identities=17% Similarity=0.078 Sum_probs=131.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+++.+.++.+|..|+.++.++.....+. +.+.+.++.+.++|.+.++.++..|+.+|..++.+...
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~----------~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM----------VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC----------HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh----------cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 67888888999999999999999997644332 44467889999999999999999999999999885431
Q ss_pred H-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 A-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
. ..-...+.+..|++.+...++-.+...+.+|..++..++.. ....++.+..++. +.++.++.+|++++..+
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~---~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLS---HANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSC---SSTTHHHHHHHHHHHHS
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHc---CCChHHHHHHHHHHHHH
Confidence 1 00001223667778887888888888888888887443211 1124555656663 46779999999999999
Q ss_pred cc----CCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 541 AA----DDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 541 ~~----~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.. +++....+. ....+.|+.++. + +..++..|+.+|..+...
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQK 312 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHh
Confidence 74 233333333 345667776554 4 479999999999998863
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-05 Score=83.03 Aligned_cols=222 Identities=13% Similarity=0.024 Sum_probs=141.5
Q ss_pred HHHHHhhccC--CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQST--QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
+.++..+... ++.++..|+.++.++...-..+.. . .....-.++.+.+.+.+.+++++..++.++..++...
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~--~----~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD--K----ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT--S----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhh--h----hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 7788888776 789999999999987532111100 0 0111113566666677778999999999999998732
Q ss_pred hh--HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHH------------------HHHh---cCChHHHH
Q 007131 460 KV--AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG------------------AIAD---AGGVKALV 516 (617)
Q Consensus 460 ~~--~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~------------------~i~~---~g~i~~L~ 516 (617)
.. ...+ ..+.++.++..+++.+++++..|+..+..++....... .+.+ ...+|.++
T Consensus 249 ~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 249 YQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp GGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 21 1111 11446777888888999999999999888875321000 0111 22455555
Q ss_pred HHHhhc----CCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCc
Q 007131 517 DLIFKW----SSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNN 592 (617)
Q Consensus 517 ~ll~~~----~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 592 (617)
..+.+. .+.+..++..|+.+|..++..-+. .+. ...++.+...+.+.+ ..++..|+.+|..++...... ..
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~-~~ 402 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPS-QL 402 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTT-TT
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHH-HH
Confidence 666431 122346889999999999854331 222 235566777777664 899999999999999743321 11
Q ss_pred cccccccCcHHHHHHHhcCCCCCCC
Q 007131 593 SAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 593 ~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
... -..+++.|+.++.++++.||
T Consensus 403 ~~~--l~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 403 KPL--VIQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp CTT--TTTHHHHHHHGGGCSCHHHH
T ss_pred HHH--HHHHHHHHHHHhcCCCHHHH
Confidence 111 25789999999998877664
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-06 Score=80.10 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHccCChHhHH-HHhhhchhHHHhhcCCCccccc
Q 007131 38 VDWTSLPDDTVIQLMSCLNYRDRA-SLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 38 ~~~~~LP~e~l~~I~~~L~~~~~~-~~~~vck~w~~~~~~~~~w~~l 83 (617)
..+..||+|++..||++||.++++ +|+.|||+|+.+..++.+|+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 468999999999999999999999 9999999999999998888644
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.6e-06 Score=77.03 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=70.5
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++. +......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++|
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~-~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN-RLRCIP-PRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTC
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC-ccCEeC-HHHhCCCCCC
Confidence 46777777766 4431 11223456788888888773 333 34677888888888886 333211 1123467888
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++|++++|.++.-. ...+..+++|+.|++++|+..-+..
T Consensus 105 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 105 RLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCeecCCc
Confidence 89999888765321 2345568999999999998766554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.1e-06 Score=90.05 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
..|+.|+++++ .++. +.. ...+++|+.|++++| .++. ..+..+++|++|++++| .++. +. -...+++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~--lp-~l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALEN--VD-GVANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCC--CG-GGTTCSSCC
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCC--Cc-ccCCCCCCc
Confidence 36888888877 5543 233 345678888888887 3443 45677888888888887 3432 22 345678888
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
.|++++|.++....+..+..+++|+.|++++|++.+.
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 8888887765432234456788888888888875443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-06 Score=78.66 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=71.3
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.-........+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEIS-NKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEEC-SSSSTTCTTC
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccC-HHHhcCCCCC
Confidence 36777777766 4432111112345678888888877 3432 45677788888888886 343211 1113457889
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++|++++|.++... +..+..+++|++|++++|+...+..
T Consensus 105 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 105 KTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999988765432 3345568999999999998776654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.2e-06 Score=88.08 Aligned_cols=134 Identities=12% Similarity=0.083 Sum_probs=90.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCc
Q 007131 151 EALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVL 227 (617)
Q Consensus 151 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~ 227 (617)
+.++.|+|++ + .++......+...+++|++|+|+++ .++.-.- .....+++|++|++++| .++. ..+..++
T Consensus 39 ~~l~~L~Ls~--N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSH--N-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCS--S-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred CCCCEEECCC--C-CCCccChhhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCC-cCCcCCHHHhCCCc
Confidence 4689999963 3 5554222222226899999999998 5543111 12346799999999998 4554 4578899
Q ss_pred CCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHH---hcCCCCCEEEccCCCCCCh
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLL---TSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~---~~~~~L~~L~l~~c~~~~~ 293 (617)
+|++|++++| .++... ......+++|++|++++|.++.-. ..++ ..+++|+.|++++|.+...
T Consensus 113 ~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVD-RNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp TCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCCEEECCCC-cccEEC-HHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCCcc
Confidence 9999999998 443211 122457899999999998765421 1122 4589999999999986543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.8e-06 Score=93.37 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=40.0
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
.+++|++|+|+++ .++ .+..-+..+++|++|+|++|. ++. ..+..+++|++|++++| .++ .+..-...+++
T Consensus 245 ~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~ 317 (727)
T 4b8c_D 245 KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVT--TLPWEFGNLCN 317 (727)
T ss_dssp GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCC--CCCSSTTSCTT
T ss_pred CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCC--ccChhhhcCCC
Confidence 3566666666665 333 111112345666666666652 332 23455556666666555 232 11111334555
Q ss_pred CCeEEeccCCCC
Q 007131 255 LVGLDVSRTDVG 266 (617)
Q Consensus 255 L~~L~l~~~~~~ 266 (617)
|++|++++|.++
T Consensus 318 L~~L~L~~N~l~ 329 (727)
T 4b8c_D 318 LQFLGVEGNPLE 329 (727)
T ss_dssp CCCEECTTSCCC
T ss_pred ccEEeCCCCccC
Confidence 666666655554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.4e-06 Score=78.66 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=78.7
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
.++|++|+++++ .++... ......+++|++|++++|. ++. ..+..+++|++|++++| .++... ......+++
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLE-PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVH 113 (229)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCCCEEEcCCC-ccCccC-HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccC-hhHhCcchh
Confidence 378999999987 554311 1123467999999999984 443 44688999999999998 444211 222457899
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|++|++++|.++ .++..+..+++|++|++++|.+..
T Consensus 114 L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 114 LKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred hCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCc
Confidence 999999999876 344455789999999999997553
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00035 Score=66.54 Aligned_cols=178 Identities=10% Similarity=0.003 Sum_probs=132.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-hccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh-
Q 007131 431 RLLLDLAKSWREGLQSEAAKAIAN-LSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD- 508 (617)
Q Consensus 431 ~~Lv~lL~~~~~~~~~~a~~~L~~-ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~- 508 (617)
..+++-|.+.+.+.+..++.-|.. ++.+.+....++..+|+..|+++....+...+.+++.||.+|-.....-..++.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 355667777778888899999988 666888999999999999999999999999999999999999988777766664
Q ss_pred cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-chHHHHH--------hC--CHHHHHHHHh---cCCchhHHHH
Q 007131 509 AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK-CSMEVAL--------AG--GVHALVMLAR---SCKFEGVQEQ 574 (617)
Q Consensus 509 ~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~i~~--------~~--~~~~L~~ll~---~~~~~~~~~~ 574 (617)
...|..+..++. +....+.+.|+..|..++...+ +...+.+ .| -+..|+.+|. ++ +.+++.+
T Consensus 201 ~~fI~~lyslv~---s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~-D~elq~~ 276 (339)
T 3dad_A 201 SDTIQWLYTLCA---SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA-DPELLVY 276 (339)
T ss_dssp HHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC-CHHHHHH
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC-CHHHHHH
Confidence 567777888884 4778899999999999997665 3322222 11 2678999997 44 4899999
Q ss_pred HHHHHHHHhccCCCCC---CccccccccCcHHHHHHHhcCC
Q 007131 575 AARALANLAAHGDSNS---NNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 575 a~~~L~~l~~~~~~~~---~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
|...+-.+-...+... .....+.+.|.-..+.+.++..
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 8888777665444321 1222334456556666667665
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.9e-06 Score=94.71 Aligned_cols=81 Identities=15% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 204 CPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
+++|++|+|++| .++. ..+..+++|++|++++| .++ .+..-...+++|++|++++|.++ .++..+..+++|+
T Consensus 246 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 246 YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLT--SLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQ 319 (727)
T ss_dssp CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCS--SCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCC
T ss_pred CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCC--ccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCcc
Confidence 344444444444 2221 22344444444444444 222 11111233444444444444433 1222233444444
Q ss_pred EEEccCCCC
Q 007131 282 VLCALNCPV 290 (617)
Q Consensus 282 ~L~l~~c~~ 290 (617)
+|+|++|++
T Consensus 320 ~L~L~~N~l 328 (727)
T 4b8c_D 320 FLGVEGNPL 328 (727)
T ss_dssp CEECTTSCC
T ss_pred EEeCCCCcc
Confidence 444444443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=97.75 E-value=1.8e-06 Score=78.54 Aligned_cols=108 Identities=18% Similarity=0.051 Sum_probs=79.8
Q ss_pred hcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
..+++|++|+++++ .++. +.. ...+++|++|++++| .++. ..+..+++|++|++++| .++. +.. ...++
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~--l~~-~~~l~ 115 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--ISS-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIAS--LSG-IEKLV 115 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CCC-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCC--HHH-HHHHH
T ss_pred hcCCCCCEEECCCC-CCcc--ccc-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCc--CCc-cccCC
Confidence 34899999999988 4544 222 335699999999998 3443 34566799999999998 4544 222 45688
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
+|++|++++|.++.-.....+..+++|++|++++|+...
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 999999999988753323456789999999999997433
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.1e-06 Score=74.54 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.- .......+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 28 ~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccC-HHHhhCCccc
Confidence 56677777665 33311 0112234577777777776 3332 33567778888888776 333110 1123467888
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++|++++|.++... ..++..+++|++|++++|+...+.
T Consensus 103 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 103 KELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECcCCcceEeC-HHHhcCCcccCEEEecCCCeeccC
Confidence 88888887765221 234466889999999999876655
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=68.86 Aligned_cols=189 Identities=8% Similarity=-0.006 Sum_probs=128.8
Q ss_pred HHHHhhccCCHHHHHHHHHHHhh-hcccCCCcccCCchhHHHHHh-hCCHHHHHHHH-hcCCHHHHHHHHHHHHHhccch
Q 007131 383 LLLSLMQSTQEDVQERAATGLAT-FVVINDENASIDCGRAEAVMK-DGGIRLLLDLA-KSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 383 ~l~~~l~~~~~~~~~~a~~~L~~-L~~~~~~~~~~~~~~~~~i~~-~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
.+.+.+.+.+...|..|+..|.. +.....+-.. ...+ ...+..|.+.+ ++.+..++..|+.+|..|+..-
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~-------~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKS-------TSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCC-------TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCcccc-------CcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 45577788999999999999998 7643222100 0001 23467888888 6789999999999999998521
Q ss_pred ---hhH-HHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 460 ---KVA-KAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 460 ---~~~-~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
... ... ...++.+++.+++..+.+++.+..+|..++..- .....-.-...++.|+..|. +.++.++..++
T Consensus 93 ~~~~f~~~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~---~k~~~vk~~al 167 (249)
T 2qk1_A 93 KTPGFSKDYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK---HKTPQIRMECT 167 (249)
T ss_dssp CTTTSCHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT---CSSHHHHHHHH
T ss_pred ccccccHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc---CCChHHHHHHH
Confidence 211 111 113788899998888999999988888887522 10000000024556666674 45889999999
Q ss_pred HHHHHhccCCCc-hHHHH-H--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 535 GALANLAADDKC-SMEVA-L--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 535 ~~L~~l~~~~~~-~~~i~-~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.+|..++..... ...+. . ...++.+.+++.+++ ..++..|..++..++.
T Consensus 168 ~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~-~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 168 QLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ-PAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 999999854332 12221 1 367889999998775 8999999999999985
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=3.7e-06 Score=77.79 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=77.9
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
+.+++|+++++ .++..........+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQ-HKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCC-GGGGTTCSSC
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccC-HhHhcCCcCC
Confidence 46788888887 4543211122356899999999998 4554 45788999999999998 343211 2234678999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
++|++++|.++... +..+..+++|++|++++|.+.+.
T Consensus 108 ~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 108 KTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCB
T ss_pred CEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEE
Confidence 99999998875432 23455789999999999976544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=97.72 E-value=3.9e-06 Score=77.68 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+++++ .++.-.- .....+++|++|++++| .++. ..+..+++|++|++++| .++.- ......++++|
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITEL-PKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCcc-CHhHccCCCCC
Confidence 57888988887 4442111 12345789999999998 4543 56789999999999997 44311 12234678999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++|++++|.++... +..+..+++|++|++++|.+.+..
T Consensus 107 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 107 QLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEEC
Confidence 99999998775432 234567899999999999865443
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0002 Score=77.09 Aligned_cols=202 Identities=13% Similarity=0.021 Sum_probs=141.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~ 460 (617)
..+.+-+.+.++.++-.|+.+|.++.. ..+. ...++.+.++|.+.++.+|..|+.++.++.. +++
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~~-------------~~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMGS-------------SEMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHCC-------------HHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCC-------------HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 677777888899999999999998851 1222 3567889999999999999999999999987 333
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhc------------CCCCH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKW------------SSGGD 527 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~------------~~~~~ 527 (617)
.. .+.++.+..+|.+.++.++..|+.+|..++... +....+ ...++.++.+|... ...++
T Consensus 176 ~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 176 LM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp GG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred HH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 22 245777888898999999999999999998654 222222 25788888887631 02467
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcC-----CchhHHHHHHHHHHHHhccCCCCCCccccccccCcH
Q 007131 528 GVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC-----KFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGAL 602 (617)
Q Consensus 528 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~ 602 (617)
-++..++.+|..++..++. ......+.|..++... ....+...|+.++.++... ..+. ..++
T Consensus 249 ~~q~~il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~--------~~l~-~~a~ 315 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE--------SGLR-VLAI 315 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC--------HHHH-HHHH
T ss_pred hHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC--------HHHH-HHHH
Confidence 7888899999999875432 1123455566665421 1246777888888776421 1111 2457
Q ss_pred HHHHHHhcCCCCCCC
Q 007131 603 EALVQLTRSPHEGVR 617 (617)
Q Consensus 603 ~~L~~ll~~~~~~vr 617 (617)
+.|..++.++++.+|
T Consensus 316 ~~L~~~L~~~d~~vr 330 (618)
T 1w63_A 316 NILGRFLLNNDKNIR 330 (618)
T ss_dssp HHHHHHHTCSSTTTH
T ss_pred HHHHHHHhCCCCchH
Confidence 788888877776664
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=75.31 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=126.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+.+.+++++..++.+|..++........ .....+.++.++..+++.+++++..|+..+..++.....
T Consensus 220 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~ 292 (462)
T 1ibr_B 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-------TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 5555666778899999999999998765433210 111115677788888888999999999999888764311
Q ss_pred HHH------------------HHH---hCCHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 462 AKA------------------VAE---EGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 462 ~~~------------------i~~---~~~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
... +.+ ...++.+++.+... +..++..|+.+|..++..-. . .+. ...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~-~~~~~ 369 (462)
T 1ibr_B 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIV-PHVLP 369 (462)
T ss_dssp HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THH-HHHHH
T ss_pred HHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHH-HHHHH
Confidence 110 111 12245566666432 23678899999998875322 1 111 13455
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-c--hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDK-C--SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.+...+ .+.+..++..|+.++..++.... . +..+ ...++.++.++.+++ ..++..|+++|.+++..
T Consensus 370 ~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 370 FIKEHI---KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 566666 35788999999999999997433 1 1111 356788899888775 89999999999999974
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.6e-05 Score=84.57 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=45.6
Q ss_pred CCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEE
Q 007131 206 NLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLC 284 (617)
Q Consensus 206 ~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 284 (617)
.|+.|++++| .++. ..+..+++|++|++++| .++ .+......+++|+.|++++|.++. ++ .+.++++|+.|+
T Consensus 442 ~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSSCCCGGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCCCcCccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEE
Confidence 5666776666 2332 22556666777777665 333 122233456667777777666553 33 345566677777
Q ss_pred ccCCCCCCh
Q 007131 285 ALNCPVLEE 293 (617)
Q Consensus 285 l~~c~~~~~ 293 (617)
+++|.+.+.
T Consensus 515 Ls~N~l~~~ 523 (567)
T 1dce_A 515 LCNNRLQQS 523 (567)
T ss_dssp CCSSCCCSS
T ss_pred CCCCCCCCC
Confidence 766655443
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00068 Score=60.48 Aligned_cols=148 Identities=17% Similarity=0.081 Sum_probs=112.5
Q ss_pred hCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc-hH
Q 007131 427 DGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE-HK 503 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~-~~ 503 (617)
.+.+..|+++|.+.|+.++..|..+|..+... ...+..+++. .++.+++++++.++.+.-.|..+|..|-.+.+ ..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 34678899999999999999999999999885 3344444443 68999999999999999999999999875542 22
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 504 GAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
..+.. .+..|.+++. ++++-+...|+..+.-+......+. .+..+.+++.+. +.+++..|..++.+++
T Consensus 111 ~~y~K--l~~aL~dlik---~~~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~Sk-d~~vK~agl~~L~eia 178 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLE---SPDDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVSP-DLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHHH--HHHHHHHHTT---SCCHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTCS-SHHHHHHHHHHHHHHG
T ss_pred HHHHH--HHHHHHHHhc---CCCchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhCC-ChhHHHHHHHHHHHhh
Confidence 33322 4556677774 5888899999999999943333322 345688888555 5999999999999999
Q ss_pred ccCC
Q 007131 584 AHGD 587 (617)
Q Consensus 584 ~~~~ 587 (617)
..++
T Consensus 179 ~~S~ 182 (265)
T 3b2a_A 179 NSSA 182 (265)
T ss_dssp GGCS
T ss_pred cccC
Confidence 8554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00034 Score=78.91 Aligned_cols=215 Identities=11% Similarity=0.034 Sum_probs=136.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+.+.+...+..|+.++..++...... .-.... ...++.++..+.++++.+|..+++++..++..-..
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~------~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKV------QRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH------HHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH------HHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 66667777888999999999999987443211 001111 24678888888888999999999999998863110
Q ss_pred ----HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc------chHHHHHhcCChHHHHHHHhhcCCCCHHHHH
Q 007131 462 ----AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE------EHKGAIADAGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 462 ----~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~------~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
...+ ...++.+++.+.+. +.++..|+++|.+++..- .....+ ...++.|+.++.. .+.++.++.
T Consensus 445 ~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~-~d~~~~vr~ 518 (861)
T 2bpt_A 445 SIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANR-IDNEFNARA 518 (861)
T ss_dssp GSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTC-SCCGGGHHH
T ss_pred hcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhC-cCcchHHHH
Confidence 1111 12367788888765 889999999999987431 111111 2346677777753 233468999
Q ss_pred HHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcC--------------CchhHHHHHHHHHHHHhccCCCCCCccccc
Q 007131 532 RAAGALANLAADDKC-SMEVALAGGVHALVMLARSC--------------KFEGVQEQAARALANLAAHGDSNSNNSAVG 596 (617)
Q Consensus 532 ~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~--------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 596 (617)
.++.++..++...+. ...... ..++.+++.+... ....++..++.+|.+++..-+. .....
T Consensus 519 ~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~ 594 (861)
T 2bpt_A 519 SAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS---SVEPV 594 (861)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG---GTGGG
T ss_pred HHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh---hhHHH
Confidence 999999999854332 222222 3566677766531 1246788899999999864332 11111
Q ss_pred cccCcHHHHHHHhcCCCC
Q 007131 597 QEAGALEALVQLTRSPHE 614 (617)
Q Consensus 597 ~~~g~~~~L~~ll~~~~~ 614 (617)
-...++.+..++++.+.
T Consensus 595 -~~~l~~~l~~~l~~~~~ 611 (861)
T 2bpt_A 595 -ADMLMGLFFRLLEKKDS 611 (861)
T ss_dssp -HHHHHHHHHHHHHSTTG
T ss_pred -HHHHHHHHHHHHccCCC
Confidence 13466777777766543
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00015 Score=85.18 Aligned_cols=213 Identities=14% Similarity=0.036 Sum_probs=142.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++.+.+.++.+|..|+.+|..++..... . .-...++.++..+.++++.+|..|+.+|..++..-..
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~------~-----~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKE------Y-----QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH------H-----HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH------H-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 7788888888999999999999998743221 1 1123557788888888889999999999988862111
Q ss_pred H------HHHHHhCCHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 462 A------KAVAEEGGINILAVLAR-SMNRLVAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 462 ~------~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
. ..-.....++.|++.+. +.++.++..|+.+|..++.. +.....+ ...++.++..+. +.+..++..
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~---~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLT---SPRLAVRKR 194 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGG---CSSHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHc---CCcHHHHHH
Confidence 1 01112334788999998 47889999999999998742 1111000 123444555553 466789999
Q ss_pred HHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 533 AAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 533 a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
|+.++..++...+.. +. ...++.++..+...++..++..|+.++..++..... .... .-...++.+.+.++++
T Consensus 195 a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~l~~l~~~ll~~l~d~ 267 (1230)
T 1u6g_C 195 TIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGE-YLEKIIPLVVKFCNVD 267 (1230)
T ss_dssp HHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTT-SCTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHH-HHHHHHHHHHHHhcCC
Confidence 999999998654322 22 245788888776654356777888899888864321 1111 1246899999999888
Q ss_pred CCCCC
Q 007131 613 HEGVR 617 (617)
Q Consensus 613 ~~~vr 617 (617)
+++||
T Consensus 268 ~~~vR 272 (1230)
T 1u6g_C 268 DDELR 272 (1230)
T ss_dssp CTTTH
T ss_pred CHHHH
Confidence 87775
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.7e-06 Score=81.89 Aligned_cols=91 Identities=10% Similarity=0.142 Sum_probs=62.5
Q ss_pred CcHHHHHHHHhcCCCCceEeecCC--CCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC-eEEeccC--CCC
Q 007131 192 ICGDAINALAKLCPNLTDIGFLDC--LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV-GLDVSRT--DVG 266 (617)
Q Consensus 192 i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~-~L~l~~~--~~~ 266 (617)
+....+..+...|++|++|++.+| ..+.+..+..|++|++|++..+ ++.-+ ...+.+|++|+ .+++..+ .++
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~-~~aF~~~~~L~~~l~l~~~l~~I~ 289 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIG-QRVFSNCGRLAGTLELPASVTAIE 289 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEEEECTTCCEEC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceeh-HHHhhCChhccEEEEEcccceEEc
Confidence 344455556666899999999885 3344567888999999999775 32211 22346789999 9999882 233
Q ss_pred HHHHHHHHhcCCCCCEEEccCCC
Q 007131 267 PITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 267 ~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+. .+.+|++|+.|++.++.
T Consensus 290 ~~----aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 290 FG----AFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TT----TTTTCTTEEEEEECSSC
T ss_pred hh----hhhCCccCCEEEeCCCc
Confidence 33 35679999999987664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.49 E-value=2.5e-05 Score=77.18 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHhcCCCCCeeeccCc--cCCcHHHHHHHHhcCCCCceEeecCC-CCCCHHHHhcCcCCC-eecccCCCCC
Q 007131 165 RITSDAVKAIALCCPKLKKLRLSGI--RDICGDAINALAKLCPNLTDIGFLDC-LNVDEVALGNVLSVR-FLSVAGTSNM 240 (617)
Q Consensus 165 ~i~~~~l~~l~~~~~~L~~L~l~~~--~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~-~L~l~~~~~i 240 (617)
.+....+..+...|++|++|+++++ ..+.+. ....|++|++|++.++ ..+.+..+.+|++|+ .+.+.. .+
T Consensus 212 ~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l 285 (329)
T 3sb4_A 212 KLDNADFKLIRDYMPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SV 285 (329)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TC
T ss_pred eecHHHHHHHHHhcCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cc
Confidence 3555666666677999999999985 223332 3357899999999875 234557789999999 999976 23
Q ss_pred CHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEc
Q 007131 241 KWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCA 285 (617)
Q Consensus 241 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 285 (617)
+.-+ ...+.+|++|+.+++.++.++.-. ...+.+|++|+.|..
T Consensus 286 ~~I~-~~aF~~c~~L~~l~l~~n~i~~I~-~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 286 TAIE-FGAFMGCDNLRYVLATGDKITTLG-DELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEC-TTTTTTCTTEEEEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred eEEc-hhhhhCCccCCEEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence 2111 223468999999999886553322 234567999998863
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0056 Score=58.31 Aligned_cols=186 Identities=15% Similarity=0.100 Sum_probs=131.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++-|.+.+.+.++.++..|..+-..+.. ....++..+|+..|+++....+.+.+..+..++.+|-.+..+
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~-------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G 193 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKD-------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG 193 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTT-------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchH-------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc
Confidence 5667777777777788898888873222222 236899999999999999999999999999999999999888
Q ss_pred HHHHHH-hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHh-------c---CChHHHHHHHhhcCCCCHHH
Q 007131 462 AKAVAE-EGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIAD-------A---GGVKALVDLIFKWSSGGDGV 529 (617)
Q Consensus 462 ~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~-------~---g~i~~L~~ll~~~~~~~~~~ 529 (617)
-..++. ...|..+..++.+....+...|+..|..++... .+...+.+ . -..+.|+.+|.+..+.+.++
T Consensus 194 m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 194 MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 877775 445899999998888999999999999998544 33333322 1 13678999996433578899
Q ss_pred HHHHHHHHHHhccCCCc---hHHHH---HhCCHH-HHHHHHhcC-CchhHHHH
Q 007131 530 LERAAGALANLAADDKC---SMEVA---LAGGVH-ALVMLARSC-KFEGVQEQ 574 (617)
Q Consensus 530 ~~~a~~~L~~l~~~~~~---~~~i~---~~~~~~-~L~~ll~~~-~~~~~~~~ 574 (617)
+.+|+..+..+-..-+. +..+. +.-++. .+.+.+... .+.+++++
T Consensus 274 q~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 274 LVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 99999887776543222 33333 334454 455566553 23444443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.44 E-value=2.1e-05 Score=81.76 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcC-CCcccccCC
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGAS-PCLWSSLDL 85 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~-~~~w~~l~l 85 (617)
.+.+..||+|++.+||+||+.++++++++|||+|+.+..+ +.+|+.+-+
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~ 61 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLI 61 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4568899999999999999999999999999999999887 789986654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00078 Score=76.05 Aligned_cols=213 Identities=14% Similarity=0.065 Sum_probs=135.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+...+++++..++.+|..++....... ........++.++..+.+.++.++..|+..+..++.....
T Consensus 220 ~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM-------ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC-------HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 566666677788999999999999875543321 2233346778888888888899999999999888764210
Q ss_pred -----HHH-------------HHH---hCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 462 -----AKA-------------VAE---EGGINILAVLARS-------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 462 -----~~~-------------i~~---~~~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
... ..+ ...++.+++.|.. .+..++..|+.+|..++.... ..+. ...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~ 369 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLP 369 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHH
T ss_pred HhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHH
Confidence 000 000 1125566666653 234688888889988875322 1111 12344
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-c-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCC
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDK-C-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 591 (617)
.+...+ .+.+..++..|+.++..++.... . -.... ...++.++..+.++. ..++..|+++|.+++........
T Consensus 370 ~l~~~l---~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 370 FIKEHI---KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHc---cCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 455555 35678999999999999996543 2 11222 346788888887764 89999999999999975332100
Q ss_pred ccccccccCcHHHHHHHhcC
Q 007131 592 NSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 592 ~~~~~~~~g~~~~L~~ll~~ 611 (617)
.... -...++.|+..+.+
T Consensus 445 ~~~~--l~~~l~~l~~~l~~ 462 (876)
T 1qgr_A 445 NDVY--LAPLLQCLIEGLSA 462 (876)
T ss_dssp STTT--HHHHHHHHHHHTTS
T ss_pred cHHH--HHHHHHHHHHHHcC
Confidence 0011 12456666666654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=61.82 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=107.1
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
+.+...+. ..+..++..|+.++..|+..-.... .-.-...++.+++.+.+.++.+|..|+.+|..+.....
T Consensus 59 ~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~--------~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 59 SALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF--------SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG--------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 77788884 7889999999999999984322211 11234477899999999999999999999999987543
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--cc--hHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG--EE--HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~--~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
.. ..++.+...|+..++.++..++..|..+... ++ ....+ ...+|.|+.++. +.+.+++..|..+
T Consensus 131 ~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~---D~~~~VR~~A~~~ 199 (242)
T 2qk2_A 131 LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLN---EPDPTVRDSSAEA 199 (242)
T ss_dssp HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHT---SSCHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 21 1357788888889999999999999996433 22 12222 247888888894 5888999999999
Q ss_pred HHHhcc
Q 007131 537 LANLAA 542 (617)
Q Consensus 537 L~~l~~ 542 (617)
+..++.
T Consensus 200 l~~l~~ 205 (242)
T 2qk2_A 200 LGTLIK 205 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00094 Score=78.43 Aligned_cols=208 Identities=18% Similarity=0.098 Sum_probs=136.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+++-+.+.+.++|..|...|.+....+.. ..++. .....++.+++.|.+.++.+|..|+.+|..++..-..
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~--~~~~~-----~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSI--KLDDD-----SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC--SCCTT-----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHccccc--CCChh-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH
Confidence 6677778889999999998888875433211 11111 1234567888889888999999999999999863221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch-------HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH-------KGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~-------~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
..+ ...++.++..+.++++.++..|+.+|..++..-.. .... -...+|.|+..+.+ +.+..++..|+
T Consensus 82 -~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~--~~~~~~~~~al 155 (1230)
T 1u6g_C 82 -YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAK--QEDVSVQLEAL 155 (1230)
T ss_dssp -HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSC--CSCHHHHHHHH
T ss_pred -HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcC--CCchHHHHHHH
Confidence 111 12356788888888888999999999988742211 1111 13467888888842 46788999999
Q ss_pred HHHHHhccC-CC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCC
Q 007131 535 GALANLAAD-DK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSP 612 (617)
Q Consensus 535 ~~L~~l~~~-~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 612 (617)
.++..++.. ++ ....+ ...++.++..+.+++ ..++..|+.+|..++...+.. . . ...++.+++.+...
T Consensus 156 ~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~-----~-~-~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNI-----V-F-VDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----------C-TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhcCHH-----H-H-HHHHHHHHHHhccC
Confidence 999999842 11 11111 224455666666654 799999999999998643321 1 1 24577777766543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.32 E-value=8.9e-05 Score=76.57 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCccccc
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l 83 (617)
.+.+..||+|++.+||+||+.+++.++++|||+|+.+..++.+|+.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~ 62 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 62 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhh
Confidence 46699999999999999999999999999999999999888888754
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=97.31 E-value=9.3e-06 Score=73.30 Aligned_cols=58 Identities=9% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC
Q 007131 204 CPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 264 (617)
+++|++|++++| .++. ..+..+++|++|++++| .++... ......+++|++|++++|.
T Consensus 77 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 77 ASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred cccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 344555555444 2222 12344455555555554 222100 0112334555555555544
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0016 Score=65.43 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=139.1
Q ss_pred HHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC--CHHHHHHHHhcC-----------------CH
Q 007131 383 LLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG--GIRLLLDLAKSW-----------------RE 442 (617)
Q Consensus 383 ~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~Lv~lL~~~-----------------~~ 442 (617)
.++..+.. .+.+.+..++..|..|... +.+|..+.+.+ .++.++..+... ..
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~--------~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~ 242 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI--------PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGI 242 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS--------HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc--------hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccH
Confidence 34455544 3445566777777777543 34445665433 467776654421 25
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHhCCH--HHHHHHHhc-CCHHHHHHHHHHHHHhcCCc-c----hHH-HHHhcCChH
Q 007131 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGI--NILAVLARS-MNRLVAEEAAGGLWNLSVGE-E----HKG-AIADAGGVK 513 (617)
Q Consensus 443 ~~~~~a~~~L~~ls~~~~~~~~i~~~~~i--~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~-~----~~~-~i~~~g~i~ 513 (617)
+++-.++-+++-|+.+++..+.+...+.+ +.|+.+++. ..+.+.+-++.+|.|+.... + ... .++..++ +
T Consensus 243 Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l 321 (480)
T 1ho8_A 243 QLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-L 321 (480)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-H
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-h
Confidence 67899999999999999988888766532 567777776 55789999999999998654 1 112 2222334 5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHH-------HHhcc---------------CCCch-HHHHHh----------CCHHHHH
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGAL-------ANLAA---------------DDKCS-MEVALA----------GGVHALV 560 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L-------~~l~~---------------~~~~~-~~i~~~----------~~~~~L~ 560 (617)
+++..|....-.++++.+..-... ..++. .+..+ +.+..+ ..++.|+
T Consensus 322 ~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~ 401 (480)
T 1ho8_A 322 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI 401 (480)
T ss_dssp HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHH
Confidence 566666542334555443332222 22221 11112 233322 2367888
Q ss_pred HHHhc---------CCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 561 MLARS---------CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 561 ~ll~~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
++|.+ +.++.+..-||.=+..++..-+. -+.++.+.|+=+.+.+++.+++++||
T Consensus 402 ~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~---gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 402 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE---SIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT---HHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHhhhccccccccCCCcceEEeecccHHHHHHHCcc---hhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 98874 22467888899999999886544 34555678988889999999988775
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=3.5e-05 Score=79.45 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=43.2
Q ss_pred CCCCCCCCHH----HHHHHHccCChHhHHHHhhhchhHHHhhcCCCccccc
Q 007131 37 VVDWTSLPDD----TVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 37 ~~~~~~LP~e----~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l 83 (617)
.+.+..||+| ++.+||+||+.+++.++++|||+|+.+..++.+|+.+
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~ 58 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 4568899999 9999999999999999999999999999888999755
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0037 Score=67.27 Aligned_cols=176 Identities=14% Similarity=0.015 Sum_probs=129.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
...++++.+.+...++-+..++..++..+.+- .+ -.+..|.+-|.++++.++..|+++|+++.. ++.
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~---------~~---l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~ 139 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDERQDV---------HL---LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEM 139 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH---------HH---HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH---------HH---HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHH
Confidence 56678888888898888888888876443221 11 245778888889999999999999999984 332
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
. ...++.+.++|.+.++.++..|+.++.++.. +++. ++ +.++.+..+|. +.++.++..|+.+|..+
T Consensus 140 ~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~---D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 140 C-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLN---EKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp H-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTT---CCCHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhC---CCCHhHHHHHHHHHHHH
Confidence 2 2246888999999999999999999999975 3332 22 56777777784 57889999999999999
Q ss_pred ccCCCchHHHHHhCCHHHHHHHHhc--------------CCchhHHHHHHHHHHHHhc
Q 007131 541 AADDKCSMEVALAGGVHALVMLARS--------------CKFEGVQEQAARALANLAA 584 (617)
Q Consensus 541 ~~~~~~~~~i~~~~~~~~L~~ll~~--------------~~~~~~~~~a~~~L~~l~~ 584 (617)
+..++...... ...++.+++.|.. ..++..+..+..+|..++.
T Consensus 207 ~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 207 CERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp CCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 86543221122 2567888877753 1247888888899988875
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.011 Score=57.85 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=98.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++++.+++...++-...++.+++...++. + =++..|.+=++++++-+|..|.++|+++...+-
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~----------i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m- 136 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV----------I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM- 136 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG----------G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH----------H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-
Confidence 56778888888888888888888876553321 1 355677777888888889888888888865443
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
-+.+ .+.+-+.|.+.++.|+..|+-+...|.... . .+++ +.+..+-+++ .+.++.++.+|+++|..+.
T Consensus 137 ~~~l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--p-e~v~-~~~~~l~~ll---~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 137 LQAI-----ERYMKQAIVDKVPSVSSSALVSSLHLLKCS--F-DVVK-RWVNEAQEAA---SSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--H-HHHH-TTHHHHHHHT---TCSSHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHcCCCCHHHHHHHHHHHHHHhccC--H-HHHH-HHHHHHHHHh---cCCCccHHHHHHHHHHHHH
Confidence 2222 345777788888888888888888886432 1 1233 5777888888 3577888888888888887
Q ss_pred cCCC
Q 007131 542 ADDK 545 (617)
Q Consensus 542 ~~~~ 545 (617)
..+.
T Consensus 205 ~~d~ 208 (355)
T 3tjz_B 205 KNDR 208 (355)
T ss_dssp TTCH
T ss_pred hhch
Confidence 6543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0056 Score=67.13 Aligned_cols=172 Identities=19% Similarity=0.140 Sum_probs=104.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccc-h
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVN-A 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~-~ 459 (617)
+.|..++..++...+..|+.+|..+- ....+ ..++..|+..+.+ .+.++++.++..|+.+... +
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~-vGTgn-------------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCM-LGTGK-------------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCCC-------------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhh-cccCC-------------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 56777776666655556666666431 11111 1134566665544 3677888888888766542 2
Q ss_pred hhHHHH-----------HHh-------------C---CHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCC
Q 007131 460 KVAKAV-----------AEE-------------G---GINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGG 511 (617)
Q Consensus 460 ~~~~~i-----------~~~-------------~---~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~ 511 (617)
+..+.+ ++. | +|+.|++.+.+ .++.++..|+.+|+-++...+ ..
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~ 612 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TT 612 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HH
Confidence 211111 111 1 15555555443 566788888888887765542 35
Q ss_pred hHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 512 VKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 512 i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++.++.+|. .+.++.+++.|+.+|+.++...+. .. ++..|..+.++.+ +.|+.+|+.+|..+..
T Consensus 613 v~rlv~~L~--~~~d~~VR~gAalALGli~aGn~~-~~-----aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 613 VPRIVQLLS--KSHNAHVRCGTAFALGIACAGKGL-QS-----AIDVLDPLTKDPV-DFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHTTTGG--GCSCHHHHHHHHHHHHHHTSSSCC-HH-----HHHHHHHHHTCSS-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHhccCCCc-HH-----HHHHHHHHccCCC-HHHHHHHHHHHHHHhc
Confidence 677777665 456788888888888888754443 22 3345666666654 7888888888888865
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0007 Score=63.70 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=46.3
Q ss_pred HhcCCCCceEeecCCCCCCH-----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCH------HH
Q 007131 201 AKLCPNLTDIGFLDCLNVDE-----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP------IT 269 (617)
Q Consensus 201 ~~~~~~L~~L~l~~~~~~~~-----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~------~~ 269 (617)
.+.+|+|++|++++| .++. ..+..+++|++|++++|.--+...+..+ ..+ +|++|++.+|.+.. .-
T Consensus 166 ~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 166 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred HhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhH
Confidence 355677777777776 3333 2234667777777777632222222222 122 67777777766542 33
Q ss_pred HHHHHhcCCCCCEEEc
Q 007131 270 ISRLLTSSKSLKVLCA 285 (617)
Q Consensus 270 l~~~~~~~~~L~~L~l 285 (617)
...++..+|+|+.||-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 3456667788877764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=97.12 E-value=5.5e-05 Score=67.13 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=40.6
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
+++|++|+++++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.- .......+++
T Consensus 51 l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~ 125 (177)
T 2o6r_A 51 LTQLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTS 125 (177)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTT
T ss_pred cccccEEECCCC-cceEeC-hhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEe-CHHHhcCCcc
Confidence 455555555554 332100 011224566666666665 2322 23455666666666665 33210 0112244667
Q ss_pred CCeEEeccCCC
Q 007131 255 LVGLDVSRTDV 265 (617)
Q Consensus 255 L~~L~l~~~~~ 265 (617)
|++|++++|.+
T Consensus 126 L~~L~l~~N~~ 136 (177)
T 2o6r_A 126 LQKIWLHTNPW 136 (177)
T ss_dssp CCEEECCSSCB
T ss_pred cCEEEecCCCe
Confidence 77777777654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.09 E-value=0.025 Score=62.15 Aligned_cols=145 Identities=19% Similarity=0.120 Sum_probs=86.2
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccC---------CchhHHHH-H-------hhC---CHHHHHHHHhc-
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVINDENASI---------DCGRAEAV-M-------KDG---GIRLLLDLAKS- 439 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~---------~~~~~~~i-~-------~~~---~i~~Lv~lL~~- 439 (617)
+.|+..+ ...++.+++.++.+|..+...+.+.... ++..|... . ..| +|+.|++.+.+
T Consensus 510 ~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 510 HDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 4455544 3456788888888888765444332110 01111100 0 001 23334444333
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLA-RSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDL 518 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~l 518 (617)
.++.+|..|+-+|+.++..++ ..++.++.+| .+.++.++..|+.+|+.++.+..+. .++..|..+
T Consensus 590 ~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L 655 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPL 655 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHH
Confidence 356666666666666554332 3466777754 4588999999999999998654332 234566666
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhccC
Q 007131 519 IFKWSSGGDGVLERAAGALANLAAD 543 (617)
Q Consensus 519 l~~~~~~~~~~~~~a~~~L~~l~~~ 543 (617)
. ++.+..|+.+|+.+|+.+-..
T Consensus 656 ~---~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 656 T---KDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp H---TCSSHHHHHHHHHHHHHHSTT
T ss_pred c---cCCCHHHHHHHHHHHHHHhcC
Confidence 6 578899999999999988643
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00011 Score=64.53 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
.+.|+++++ .++. +.. ...++|++|++++|. ++ ...+..+++|++|++++| .++.-. ......+++|++
T Consensus 11 ~~~l~~s~n-~l~~--ip~--~~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGK-SLAS--VPT--GIPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTS-CCSS--CCS--CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCE
T ss_pred CCEEEeCCC-CcCc--cCc--cCCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccC-hhhccCCCCCCE
Confidence 456666665 3321 100 113678888888773 33 345677888888888887 343111 122356788999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
|++++|.++... +..+..+++|++|++++|+...+.
T Consensus 83 L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 83 LSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999988765321 234567899999999999866554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=73.31 Aligned_cols=213 Identities=13% Similarity=0.036 Sum_probs=131.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+.+.+.+++++++..++.+|..++....... ........++.++..+.+.+++++..|+..+..++.....
T Consensus 227 ~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~-------~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 227 QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM-------KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC-------HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 555666777889999999999998875433221 1122225566777777888899999999999988774321
Q ss_pred HH---------------HHHH--hCCHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH
Q 007131 462 AK---------------AVAE--EGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVD 517 (617)
Q Consensus 462 ~~---------------~i~~--~~~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ 517 (617)
.. .+.. ...++.++..|... +..++..|..+|..++..-. ..+. ...++.+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~ 376 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQ 376 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHH
Confidence 10 0100 22467777777642 23688899999998875321 1111 123344444
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCcccc
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAV 595 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 595 (617)
.+ .+.+...++.|+.++..++.... ...+.. ...++.++..+.++ ++.++..|+++|..++..-.........
T Consensus 377 ~l---~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 377 NI---TADNWRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HT---TCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred Hc---CCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 45 34678899999999999996432 122211 13566677777666 4899999999999998642210000011
Q ss_pred ccccCcHHHHHHHhcC
Q 007131 596 GQEAGALEALVQLTRS 611 (617)
Q Consensus 596 ~~~~g~~~~L~~ll~~ 611 (617)
-...++.|+..+++
T Consensus 452 --~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 452 --LPGVVQACLIGLQD 465 (861)
T ss_dssp --HHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHhcc
Confidence 13456777766654
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=9.4e-05 Score=66.61 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=29.4
Q ss_pred cCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCC
Q 007131 203 LCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTD 264 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 264 (617)
.+++|++|++++|. ++. ..+..+++|++|++++| .++.-. ......+++|++|++++|.
T Consensus 76 ~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 76 NMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCC
Confidence 34556666666552 222 23555666666666665 222100 1122345666666666654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00073 Score=63.59 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=60.5
Q ss_pred HHHhcCCCCCeeeccCccCCcH-HHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCc--CCCeecccCCCCCCH------
Q 007131 173 AIALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDE-VALGNVL--SVRFLSVAGTSNMKW------ 242 (617)
Q Consensus 173 ~l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~--~L~~L~l~~~~~i~~------ 242 (617)
.+...+|+|++|+|+++ .++. .++..+...+|+|+.|+|++| .+++ ..+..++ +|++|++++|+ ++.
T Consensus 164 i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np-l~~~~~~~~ 240 (267)
T 3rw6_A 164 IIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS-LCDTFRDQS 240 (267)
T ss_dssp HHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST-TGGGCSSHH
T ss_pred HHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc-CccccCcch
Confidence 34466899999999988 5543 234445567899999999998 4554 3555555 89999999985 432
Q ss_pred HHHHHHHhcCCCCCeEEec
Q 007131 243 GVVSQVWHKLPKLVGLDVS 261 (617)
Q Consensus 243 ~~l~~l~~~~~~L~~L~l~ 261 (617)
.....+...+|+|+.||=.
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 3345667789999998643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00015 Score=64.08 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=59.3
Q ss_pred CCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCC
Q 007131 205 PNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLK 281 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 281 (617)
++|++|++++|. ++. ..+..+++|++|++++| .++.-. ......+++|++|++++|.++.-. ...+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCccceeC-HHHhccccCCC
Confidence 678888888873 332 45677888888888887 443210 122356789999999998765321 23456789999
Q ss_pred EEEccCCCCCChh
Q 007131 282 VLCALNCPVLEEE 294 (617)
Q Consensus 282 ~L~l~~c~~~~~~ 294 (617)
+|++++|+...+.
T Consensus 109 ~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 109 HIYLYNNPWDCEC 121 (174)
T ss_dssp EEECCSSCBCTTB
T ss_pred EEEeCCCCccccc
Confidence 9999999866554
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0055 Score=69.07 Aligned_cols=191 Identities=11% Similarity=0.006 Sum_probs=124.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCC------------C----cccCCchhHHHHHhhCCHHHHHHHHhc------
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVIND------------E----NASIDCGRAEAVMKDGGIRLLLDLAKS------ 439 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~------------~----~~~~~~~~~~~i~~~~~i~~Lv~lL~~------ 439 (617)
+.++..+...+++++..|+..+..++.... . .... ... +. .-...++.++..+..
T Consensus 262 ~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~ll~~ll~~l~~~~~d~~ 338 (876)
T 1qgr_A 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK-FYA-KG-ALQYLVPILTQTLTKQDENDD 338 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCC-CHH-HH-HHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhH-HHH-HH-HHHHHhHHHHHHhhccccccc
Confidence 677777777788999999988888764310 0 0000 000 00 113346777777752
Q ss_pred -CCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcc--hHHHHHhcCChHHHH
Q 007131 440 -WREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE--HKGAIADAGGVKALV 516 (617)
Q Consensus 440 -~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~--~~~~i~~~g~i~~L~ 516 (617)
.+..+|..|+.++..++..-.. .+. ...++.+...+.+.+..+++.|+.+|.+++.... .-.... .+.++.++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~ 414 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLI 414 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHH
Confidence 3457888999999988763221 111 1235666677778889999999999999997542 111222 34788888
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhccCCCch---HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 517 DLIFKWSSGGDGVLERAAGALANLAADDKCS---MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 517 ~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~---~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
..+. +.++.++..|++++.+++..-... .... ...++.++..+.+. +.++..|+++|.+++..
T Consensus 415 ~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 415 ELMK---DPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHH
T ss_pred HHhC---CCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHH
Confidence 8884 577899999999999998642211 0111 13456677776653 78999999999999864
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=96.97 E-value=3.9e-06 Score=83.90 Aligned_cols=34 Identities=15% Similarity=-0.020 Sum_probs=18.5
Q ss_pred CCceEEEecCCCCccHH--HHhcCCCccEEeccCCC
Q 007131 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCR 136 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~ 136 (617)
+++++|+|+++....-. ....+++|++|+|+++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 45667777666443211 11245667777776664
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.007 Score=56.58 Aligned_cols=151 Identities=11% Similarity=0.027 Sum_probs=105.9
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCC-CcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVIND-ENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..+...+ +..+..++..|+.+|..|+..-. .. +. .-.....++.+++.+++..+.++..+..++-.++..-
T Consensus 63 ~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~-----~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 63 GIYGHIIQKDANIQAVALAAQSVELICDKLKTPG--FS-----KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SC-----HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc--cc-----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 6777777 56788999999999999984332 11 10 0112235789999999888999999999988887632
Q ss_pred h-hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch--HH--HHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 460 K-VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH--KG--AIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 460 ~-~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~--~~--~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
+ ....-.-...++.|+..|++.++.+++.++.+|..+...... .. ..+....+|.|.+++. +.+..++..|.
T Consensus 136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~---D~~~~VR~aA~ 212 (249)
T 2qk1_A 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN---DTQPAIRTIGF 212 (249)
T ss_dssp CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHH
Confidence 1 000000011357788888889999999999999998754321 11 1222468888999994 57889999999
Q ss_pred HHHHHhcc
Q 007131 535 GALANLAA 542 (617)
Q Consensus 535 ~~L~~l~~ 542 (617)
.++..++.
T Consensus 213 ~~l~~i~~ 220 (249)
T 2qk1_A 213 ESFAILIK 220 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=96.84 E-value=1.5e-05 Score=79.49 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=102.3
Q ss_pred HhCCCceEEEecCCCCccHHHH---hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 100 SRCMNLQKLRFRGAESADSIIH---LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
..+++|++|+|+++.....+.. ..++++.++....+..++... ......+++|+.|+++. + .+....- ....
T Consensus 51 ~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~~--n-~l~~~~~-~~~~ 125 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISN--T-GIKHLPD-VHKI 125 (350)
T ss_dssp TTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEEE--E-CCSSCCC-CTTC
T ss_pred cCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccccccccccc--c-ccccCCc-hhhc
Confidence 4568899999999876443222 245666665554444343210 12335688999999963 2 3322100 0011
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
...++..|++.++..++.-....+......++.|++++| .++. .......+|++|.++++..++.-. ...+.++++
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~ 203 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASG 203 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEEC
T ss_pred ccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCC-HHHhccCcc
Confidence 234567777766544432111111222346888888887 4553 223345678888887654443211 122356788
Q ss_pred CCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 255 LVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 255 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
|+.|++++|.++.-. . ..+.+|+.|.+.++..+...
T Consensus 204 L~~LdLs~N~l~~lp--~--~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 204 PVILDISRTRIHSLP--S--YGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CSEEECTTSCCCCCC--S--SSCTTCCEEECTTCTTCCCC
T ss_pred cchhhcCCCCcCccC--h--hhhccchHhhhccCCCcCcC
Confidence 999999988764211 1 23667888887777655443
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.15 Score=51.17 Aligned_cols=142 Identities=8% Similarity=0.030 Sum_probs=97.8
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccchhhHHHHHHhCC--HHHHHHHHhcC-----------------CHHHHHHHHHH
Q 007131 433 LLDLAKSW-REGLQSEAAKAIANLSVNAKVAKAVAEEGG--INILAVLARSM-----------------NRLVAEEAAGG 492 (617)
Q Consensus 433 Lv~lL~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~--i~~L~~lL~~~-----------------~~~~~~~a~~~ 492 (617)
++..|... +.+.+..++.+|..|...++.|..+.+.++ ++.++.++... ...++..++-+
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 45556553 456677899999999999999999987655 67776654421 24568899999
Q ss_pred HHHhcCCcchHHHHHhcCCh--HHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC-c-----hHHHHHhCCHHHHHHHHh
Q 007131 493 LWNLSVGEEHKGAIADAGGV--KALVDLIFKWSSGGDGVLERAAGALANLAADDK-C-----SMEVALAGGVHALVMLAR 564 (617)
Q Consensus 493 L~nL~~~~~~~~~i~~~g~i--~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~-~-----~~~i~~~~~~~~L~~ll~ 564 (617)
+|-|++.++....+...+.. +.|+.+++. +..+++.+-++.+|.|+...+. . .+.++..++ ..+++.|.
T Consensus 252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~--s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKI--TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH--CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHcCHHHHHHHHhcchHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 99999999888888776643 567777774 6789999999999999987542 1 122333445 44555554
Q ss_pred cC--CchhHHHHHHH
Q 007131 565 SC--KFEGVQEQAAR 577 (617)
Q Consensus 565 ~~--~~~~~~~~a~~ 577 (617)
.. .++++.+..-.
T Consensus 329 ~rk~~Dedl~edl~~ 343 (480)
T 1ho8_A 329 ERKYSDEELRQDISN 343 (480)
T ss_dssp SSCCSSHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 31 12555444333
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0038 Score=67.04 Aligned_cols=142 Identities=10% Similarity=-0.009 Sum_probs=99.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH--hcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA--KSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL--~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
..+.+-+.+.++-++-.|+.+|.++.. ..+. ...++.+.+.| .+.++-+|..|+-++.++....
T Consensus 114 N~l~kDl~~~n~~ir~lALr~L~~i~~-------------~e~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 114 NAIKNDLASRNPTFMGLALHCIANVGS-------------REMA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHCC-------------HHHH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCHHHHHHHHHHhhccCC-------------HHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC
Confidence 566667778899999999999998731 1222 24568888999 7789999999999999988732
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhh---cC-C----------C
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFK---WS-S----------G 525 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~---~~-~----------~ 525 (617)
+ +.+...+.++.+.++|.+.++.|+..|+.++..++.... ..+ ...++.++..|.. .. . .
T Consensus 180 p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 180 P--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp G--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred h--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 2 122123668999999999999999999999999986432 111 1244555544431 01 1 1
Q ss_pred CHHHHHHHHHHHHHhccC
Q 007131 526 GDGVLERAAGALANLAAD 543 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~~~ 543 (617)
++-.+...+.+|..++..
T Consensus 254 ~~w~qi~il~ll~~~~~~ 271 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPP 271 (621)
T ss_dssp SHHHHHHHHHHGGGSSSC
T ss_pred CchHHHHHHHHHHHhCCC
Confidence 466788888888888754
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.027 Score=55.03 Aligned_cols=101 Identities=18% Similarity=0.076 Sum_probs=76.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+.+-++++++-++-.|+++|+++.... - .+. ..+.+.+.|.+.++-++..|+-+..+|....+
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m--------~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p- 171 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQITDST-M--------LQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF- 171 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCTT-T--------HHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCCCHH-H--------HHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-
Confidence 67778888889999999999999873111 1 012 33567777888899999999999888876432
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE 500 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~ 500 (617)
+.+ .+.++.+-+++.+.++.++.+|..+|..+...+
T Consensus 172 -e~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 172 -DVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -HHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -HHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 222 257888999999999999999999999998643
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.00032 Score=71.05 Aligned_cols=124 Identities=10% Similarity=0.167 Sum_probs=70.7
Q ss_pred hcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCc-cCCcHHHHHHHHhcCCCCceEeecCCCC-------CC
Q 007131 148 ARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLDCLN-------VD 219 (617)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~~~~-------~~ 219 (617)
.+|++|+.+++.. ....+....+. ..+|+.+.+... ..+... ....|++|+.+.+.++.. +.
T Consensus 223 ~~~~~L~~l~l~~-~l~~I~~~aF~-----~~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 223 LKTSQLKTIEIPE-NVSTIGQEAFR-----ESGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp TTCTTCCCEECCT-TCCEECTTTTT-----TCCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred hCCCCCCEEecCC-CccCccccccc-----cCCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCcccEEC
Confidence 3466777777742 22222222221 146777766532 112222 234678888888876532 44
Q ss_pred HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC--CCCHHHHHHHHhcCCCCCEEEccCCC
Q 007131 220 EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 220 ~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~~~L~~L~l~~c~ 289 (617)
+..+.+|++|+.+.+... ++.-+ ...+.+|++|+.+.+..+ .++.. .+.+| +|+.+++.++.
T Consensus 293 ~~aF~~c~~L~~l~l~~~--i~~I~-~~aF~~c~~L~~l~lp~~l~~I~~~----aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPES--IRILG-QGLLGGNRKVTQLTIPANVTQINFS----AFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCCSCCEEEECTTCCEECTT----SSSSS-CCCEEEECCSS
T ss_pred HHHhhCCccCCeEEeCCc--eEEEh-hhhhcCCCCccEEEECccccEEcHH----hCCCC-CCCEEEEcCCC
Confidence 566788888888888642 32111 122456888888888664 22333 34567 88888888764
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.033 Score=59.73 Aligned_cols=139 Identities=17% Similarity=0.088 Sum_probs=105.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
...++++.+++...++-+..++..++..+.+ .+ .-.+..+.+=|.++++-++..|+++++++.. ++.
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e----------~~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e~ 143 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSNSE----------LI--RLINNAIKNDLASRNPTFMGLALHCIANVGS-REM 143 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCCHH----------HH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCcH----------HH--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HHH
Confidence 6778889999999999999999988644322 11 1134567777888899999999999999965 332
Q ss_pred HHHHHHhCCHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLA--RSMNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL--~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
.+. .++.+.++| .+.++.|++.|+.++..+..... .++. .+.++.+.++|. +.++.++.+|+.++.
T Consensus 144 ~~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~---d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 144 AEA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLN---DQHLGVVTAATSLIT 212 (621)
T ss_dssp HHH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG---GGCCCCSCHHHHHHHTT---CSCHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh---hhcCchhHHHHHHHHhC---CCCccHHHHHHHHHH
Confidence 332 357788999 78999999999999999975221 1222 478999999994 578899999999999
Q ss_pred HhccCC
Q 007131 539 NLAADD 544 (617)
Q Consensus 539 ~l~~~~ 544 (617)
.++..+
T Consensus 213 ~i~~~~ 218 (621)
T 2vgl_A 213 TLAQKN 218 (621)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998644
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00093 Score=58.60 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=43.0
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+|+++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.-. ......+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeC-HHHhcCCCCC
Confidence 45666666655 332210 111234566777777666 3332 23456677777777766 332100 1123456777
Q ss_pred CeEEeccCCC
Q 007131 256 VGLDVSRTDV 265 (617)
Q Consensus 256 ~~L~l~~~~~ 265 (617)
++|++++|.+
T Consensus 105 ~~L~L~~N~~ 114 (170)
T 3g39_A 105 THIWLLNNPW 114 (170)
T ss_dssp CEEECCSSCB
T ss_pred CEEEeCCCCC
Confidence 7777777654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00097 Score=58.71 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=43.6
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|++|+|+++ .++.-. ......+++|++|++++| .++. ..+..+++|++|++++| .++.-. ......+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeC-HHHhccccCC
Confidence 45666666655 332210 112234566777777766 3332 23456677777777775 332100 1123456777
Q ss_pred CeEEeccCCC
Q 007131 256 VGLDVSRTDV 265 (617)
Q Consensus 256 ~~L~l~~~~~ 265 (617)
++|++++|.+
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 7777777654
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.12 Score=48.83 Aligned_cols=134 Identities=12% Similarity=0.096 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCC
Q 007131 445 QSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSS 524 (617)
Q Consensus 445 ~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~ 524 (617)
...+...|.-|--+.+.-+.+++.+||..+..+...++.++..+.+..|...+.....+..-. .+.+|-++..++. .
T Consensus 260 vtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~--h 336 (619)
T 3c2g_A 260 IIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEI--H 336 (619)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhcc--C
Confidence 344445555555566678899999999999999999999999999999999887654433222 3578888888874 6
Q ss_pred CCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcC------CchhHHHHHHHHHHH
Q 007131 525 GGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSC------KFEGVQEQAARALAN 581 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~------~~~~~~~~a~~~L~~ 581 (617)
+++++.+...+-|.|+..+... ++..+..|+++.|-..+... .+..-+..||++++|
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 7789999999999999887755 66667888999888866432 123345556766665
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0024 Score=63.29 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCCCceEeecC-CCCCCH---HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 204 CPNLTDIGFLD-CLNVDE---VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 204 ~~~L~~L~l~~-~~~~~~---~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
+++|++|+|++ | .++. ..+..+++|++|++++| .++... ...+.++++|++|+|++|.++.-. +.++..++
T Consensus 30 ~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~- 104 (347)
T 2ifg_A 30 AENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS- 104 (347)
T ss_dssp CSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-
T ss_pred CCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-
Confidence 34566666654 3 3332 33556666666666665 332210 112345666777777666554211 12223333
Q ss_pred CCEEEccCCCCCChhHH
Q 007131 280 LKVLCALNCPVLEEENN 296 (617)
Q Consensus 280 L~~L~l~~c~~~~~~~~ 296 (617)
|+.|++.+|+..-+..+
T Consensus 105 L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 105 LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp CCEEECCSSCCCCCGGG
T ss_pred ceEEEeeCCCccCCCcc
Confidence 77777777776655543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.33 Score=54.03 Aligned_cols=193 Identities=16% Similarity=0.078 Sum_probs=123.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~~~ 459 (617)
++.+++.+......++..|..++..+...-... .+ ...+|.|+..+.+. ....+..|+.++..|+...
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~---------a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPV---------AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG---------GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH---------HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 366666666666788877777777665332221 12 55689999999876 6889999999999999754
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch----------HHHHHhcCChHHHHHHHh---------
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH----------KGAIADAGGVKALVDLIF--------- 520 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~----------~~~i~~~g~i~~L~~ll~--------- 520 (617)
...-...-...||.+.+.+-+..+++...|..++..++..=.| -..|.+..-+|.-++.|.
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeec
Confidence 3222222244578888888888889999888888887752222 122222333333333332
Q ss_pred ------------h-cCCCCHHHHHHHHHHHHHhccCCCchHHHHH--hCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 521 ------------K-WSSGGDGVLERAAGALANLAADDKCSMEVAL--AGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 521 ------------~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~--~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+ -......++++++-++-|||.--++...+.. ...+|.+-+....-.++++++.|..++..|-.
T Consensus 246 ~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 246 PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 1 0123567789999999999976555444332 34555565555554458999998888888754
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.87 Score=39.06 Aligned_cols=174 Identities=17% Similarity=0.120 Sum_probs=101.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc-ch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~-~~ 459 (617)
..++..|..+-..+|.+|+..+..++...++.. ...+..|+-+++.+ .-..-...+.+++-++. .+
T Consensus 35 ~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~------------epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLY------------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH------------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH------------HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 566777776667789999999998864433321 12334555565543 44454555666666665 33
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
+.-.. .||.+..-..-+++.++.+...+|..++. +|..-.. .+..+..++. +.+..-+..|+.-+.
T Consensus 103 e~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smlt---skd~~Dkl~aLnFi~ 169 (253)
T 2db0_A 103 ELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLS---SKNREDKLTALNFIE 169 (253)
T ss_dssp HHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTS---CSSHHHHHHHHHHHH
T ss_pred HHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 32111 24555555555778888877778777763 4333322 3344556663 344333444444444
Q ss_pred HhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 539 NLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 539 ~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.+ +++...-+. ..+|.|..+|.+.+ +-|+..|+.+|.+++..
T Consensus 170 al---Gen~~~yv~-PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 170 AM---GENSFKYVN-PFLPRIINLLHDGD-EIVRASAVEALVHLATL 211 (253)
T ss_dssp TC---CTTTHHHHG-GGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTS
T ss_pred HH---hccCccccC-cchHHHHHHHcCcc-hhhhHHHHHHHHHHHHc
Confidence 33 334333332 56677777777765 77788888888888763
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.001 Score=67.30 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=77.5
Q ss_pred cCCCccEEeccCCC--CCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCc-cCCcHHHHHH
Q 007131 123 QARNLRELSGDYCR--KITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINA 199 (617)
Q Consensus 123 ~~~~L~~L~l~~~~--~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~l~~ 199 (617)
.|++|+.+++..+. .+.+..+. |.+|+.+.|.. ....+.+.. ...|++|+.+.+... ..+....+.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~-~l~~I~~~a----F~~~~~L~~l~l~~~l~~I~~~aF~- 246 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPV-TLKEIGSQA----FLKTSQLKTIEIPENVSTIGQEAFR- 246 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCT-TCCEECTTT----TTTCTTCCCEECCTTCCEECTTTTT-
T ss_pred CcccCCeeecCCCcceEechhhEe-----ecccCEEEeCC-chheehhhH----hhCCCCCCEEecCCCccCccccccc-
Confidence 46666666665432 12222221 45666666641 222222221 234677777777642 123332221
Q ss_pred HHhcCCCCceEeecCC-CCCCHHHHhcCcCCCeecccCCCC-------CCHHHHHHHHhcCCCCCeEEeccC--CCCHHH
Q 007131 200 LAKLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSN-------MKWGVVSQVWHKLPKLVGLDVSRT--DVGPIT 269 (617)
Q Consensus 200 l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~-------i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~ 269 (617)
. .+|+.+.+... ..+.+..+..|++|+.+.+.++.. +. ...+.+|++|+.+++..+ .++..
T Consensus 247 ---~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~----~~aF~~c~~L~~l~l~~~i~~I~~~- 317 (401)
T 4fdw_A 247 ---E-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH----PYCLEGCPKLARFEIPESIRILGQG- 317 (401)
T ss_dssp ---T-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC----TTTTTTCTTCCEECCCTTCCEECTT-
T ss_pred ---c-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC----HHHhhCCccCCeEEeCCceEEEhhh-
Confidence 2 46777777543 234456677888888888866421 21 123456888888888753 12222
Q ss_pred HHHHHhcCCCCCEEEccCC
Q 007131 270 ISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 270 l~~~~~~~~~L~~L~l~~c 288 (617)
.+.+|++|+.+.+..+
T Consensus 318 ---aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 318 ---LLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ---TTTTCCSCCEEEECTT
T ss_pred ---hhcCCCCccEEEECcc
Confidence 3456888888888644
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.07 Score=59.30 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh----hHHHHHHhC
Q 007131 394 DVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK----VAKAVAEEG 469 (617)
Q Consensus 394 ~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~----~~~~i~~~~ 469 (617)
+.+..++..+..+........ ....+.+..|.+.+.+.... +.|+.++..|+.... .-..+ .+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~ 95 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIEH---------DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--VQ 95 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSSS---------SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--HT
T ss_pred hHHHHHHHHHHHHHhcccccc---------ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--HH
Confidence 334666667776643322221 11236677888888765333 899999999996332 21222 24
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCch
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSV--GEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 547 (617)
-++.++....+....|+++|..++..+.. .+... ...+|.|+..|.. +..-+.+..|+.++..|+...+..
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~--~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE--TNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhHHH
Confidence 67888888888888899888877777753 22222 2357888888863 456788899999999999644322
Q ss_pred HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 548 MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 548 ~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
....=...+|.+.+.+.+.. .+|+.+|..++..+|..-++. .+ ...+|.|++.+.++.
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~----d~---~~~~~~~~~~~~~p~ 226 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNK----DI---ERFIPSLIQCIADPT 226 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCT----TT---GGGHHHHHHHHHCTT
T ss_pred HHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCc----ch---hhhHHHHHHHhcChh
Confidence 22222356788888887765 899999999999999855542 22 346888888887763
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.23 Score=47.41 Aligned_cols=136 Identities=18% Similarity=0.070 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHHhC--CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHH
Q 007131 441 REGLQSEAAKAIANLSVNAKVAKAVAEEG--GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA-DAGGVKALVD 517 (617)
Q Consensus 441 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~-~~g~i~~L~~ 517 (617)
.+..+..++++++|+..++..+..+.... .++.+...+...+..++.+++..+.|+|.........- ....+..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 56678999999999999999988877531 13333333344688899999999999986321000000 0113333444
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHH-HHhcCCchhHHHHHHHH
Q 007131 518 LIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVM-LARSCKFEGVQEQAARA 578 (617)
Q Consensus 518 ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~-ll~~~~~~~~~~~a~~~ 578 (617)
++. ...+.+....++-+|.+|...+.....+.+.-++...++ ....+.+.++.+.|..+
T Consensus 241 il~--~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 241 ILE--VVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHT--TCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHh--ccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 454 346789999999999999977655555555444444443 44443445655554443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.87 E-value=2.8 Score=35.98 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=115.2
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 382 GLLLSLM-QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 382 ~~l~~~l-~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
..|+.|+ +++.-......+.++.-++...++. -.+.+|.+..=..-++++++.....+|..++. ++
T Consensus 72 ~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~------------v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP 139 (253)
T 2db0_A 72 KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL------------VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP 139 (253)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH------------HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH------------HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh
Confidence 5566666 4666666667777888776443321 11234455544555799999999999999887 56
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
+.-..+ +.-+..++.+++..=+..|+..+..+..+ ...-+. -.+|.|..+| ++.++-++..|..+|.+
T Consensus 140 ~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen---~~~yv~-PfLprL~aLL---~D~deiVRaSaVEtL~~ 207 (253)
T 2db0_A 140 MLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGEN---SFKYVN-PFLPRIINLL---HDGDEIVRASAVEALVH 207 (253)
T ss_dssp HHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTT---THHHHG-GGHHHHHGGG---GCSSHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhcc---CccccC-cchHHHHHHH---cCcchhhhHHHHHHHHH
Confidence 654444 44577888888876666666666666543 333333 3688999999 56888999999999999
Q ss_pred hccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 540 LAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 540 l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
++...+. |..+. ..++-+.+. ++.++..+..+|..|+.
T Consensus 208 lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 208 LATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHHHHHHH
Confidence 9976554 32222 233333333 47888889899988875
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=93.54 E-value=2.9 Score=47.27 Aligned_cols=186 Identities=12% Similarity=0.040 Sum_probs=98.6
Q ss_pred cCCHHHHHHHHHHHhhhcccCCCcc-cCCc----hhHHHHHhhCCHHHHHHHHhcC---CHHHHHHHHHHHHHhccchhh
Q 007131 390 STQEDVQERAATGLATFVVINDENA-SIDC----GRAEAVMKDGGIRLLLDLAKSW---REGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 390 ~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~----~~~~~i~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...++.|+.++..++....... .... ..-..+. ...++..|.++ ++-+|..|++++..++..- .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~ 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-T 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-C
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-C
Confidence 3455677888888988864321110 0000 0001111 12234445666 7899999999999998742 1
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--------c-hHHHHHh--cCChHHHHHHHhhcCCCC-HH-
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--------E-HKGAIAD--AGGVKALVDLIFKWSSGG-DG- 528 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--------~-~~~~i~~--~g~i~~L~~ll~~~~~~~-~~- 528 (617)
.+.+ ...++.+++.|.+++..|+.+|+.||.+++... + .+..+.. ...++.|+.++.. .... .+
T Consensus 491 ~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~-~~~~~~~~ 567 (960)
T 1wa5_C 491 KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK-HGSSPEKL 567 (960)
T ss_dssp HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT-TCCCHHHH
T ss_pred HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh-ccCCCCcc
Confidence 2222 224677888888888899999999999998632 1 1232321 2344455556653 1000 01
Q ss_pred -HHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHH----hcCCchhHHHHHHHHHHHHhcc
Q 007131 529 -VLERAAGALANLAA--DDKCSMEVALAGGVHALVMLA----RSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 529 -~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll----~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
....++.++..++. .++... ... ..++.|+..+ +++++......++.+|..+...
T Consensus 568 ~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp TSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 12344455544432 122211 111 1334444433 2343456666788888888764
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.98 Score=42.58 Aligned_cols=188 Identities=12% Similarity=-0.000 Sum_probs=112.2
Q ss_pred HHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhh-CCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hh
Q 007131 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKD-GGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AK 460 (617)
Q Consensus 384 l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~ 460 (617)
+-+-+.+.+...|..|+..|..+.........-+ ..+... ...+.+-+.+.+.|..++..++.++..++.. ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~----~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRD----DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC--------------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccch----hHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 4467788899999999998887643322110000 011112 2345566677888999999999999988752 11
Q ss_pred --hHHH--HHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 461 --VAKA--VAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 461 --~~~~--i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.+.. ..-...++.|++ .|.+..+.++..|..++..++........+ ++.++..+ .+.++.++..++.
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l---~~Knpkv~~~~l~ 161 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFF---EKKLPKLIAAAAN 161 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGG---GCSCHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHH---hccCHHHHHHHHH
Confidence 1111 111223566665 366677888888888877665332111111 23333344 3568899999998
Q ss_pred HHHHhccC--CC--chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 536 ALANLAAD--DK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 536 ~L~~l~~~--~~--~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
+|..+-.. .. .....+. ..++.+..++.+.+ ..||..|..++..+...
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~-~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGD-RNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSS-HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHH
Confidence 88887531 11 1111111 23455677778875 89999999999988763
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=93.25 E-value=2.2 Score=42.12 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=97.2
Q ss_pred HHHHhhCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhccchhhHHHHHHhC-CHHHHHHHHhcCCHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKS-----------WREGLQSEAAKAIANLSVNAKVAKAVAEEG-GINILAVLARSMNRLVAEEA 489 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~-~i~~L~~lL~~~~~~~~~~a 489 (617)
+.+. .+|+..|+.+|.. .+...+..++.+|+.+..+..+...+.... +|..|+..|.+..+.++..|
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 3454 6778888888852 134678889999999999888887777644 48999999988999999999
Q ss_pred HHHHHHhcCCcc--h-HHHH----------HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------hHH
Q 007131 490 AGGLWNLSVGEE--H-KGAI----------ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------SME 549 (617)
Q Consensus 490 ~~~L~nL~~~~~--~-~~~i----------~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~ 549 (617)
+..|..+|..++ + ...+ .+..-...++..|.. ..+.+.+..++..+-.+....+. |..
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 260 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSE 260 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc--cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999998886543 2 3322 234556777777753 35667777777777777655543 445
Q ss_pred HHHhCCHHHHHHHHhcC
Q 007131 550 VALAGGVHALVMLARSC 566 (617)
Q Consensus 550 i~~~~~~~~L~~ll~~~ 566 (617)
+...|..+.+- -++..
T Consensus 261 f~~~Gl~~il~-~lr~~ 276 (383)
T 3eg5_B 261 LMRLGLHQVLQ-ELREI 276 (383)
T ss_dssp HHHTTHHHHHH-HHTTS
T ss_pred HHHCChHHHHH-HHhcC
Confidence 55555555444 45543
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.17 E-value=1.1 Score=40.64 Aligned_cols=174 Identities=13% Similarity=0.026 Sum_probs=120.8
Q ss_pred HHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCC-----HHHHHHHHHHHHHhcc--chhhHHHHHHhC
Q 007131 397 ERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWR-----EGLQSEAAKAIANLSV--NAKVAKAVAEEG 469 (617)
Q Consensus 397 ~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~ls~--~~~~~~~i~~~~ 469 (617)
-+|+..|..+|++ |+.|..+.++...--|..+|...+ +-+|-.+.++++.|.. +++.-..+.+.+
T Consensus 74 cnaLaLlQcvAsh--------petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 74 CNALALLQCVASH--------PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHC--------TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC--------cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence 3555566666644 344578889988888888887653 4578999999999997 444555666788
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--------cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Q 007131 470 GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--------AGGVKALVDLIFKWSSGGDGVLERAAGALANLA 541 (617)
Q Consensus 470 ~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--------~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~ 541 (617)
.||..++.++.+++-.+.-|.-++..+-.++.+-.-+.. ...+..++.-+. ...++.+.+.+.+|-.-|+
T Consensus 146 iiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~--~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 146 IIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLS--KEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHh
Confidence 899999999999998888888888877766543322221 123344444443 3567899999999999999
Q ss_pred cCCCchHHHHHhCC--H--HHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 542 ADDKCSMEVALAGG--V--HALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 542 ~~~~~~~~i~~~~~--~--~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
.++..++.+.+.=- + ..+..++++ ++.++.+-...+.|+
T Consensus 224 dn~rar~aL~~~LP~~Lrd~tf~~~l~~--D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 224 DNPRAREALRQCLPDQLKDTTFAQVLKD--DTTTKRWLAQLVKNL 266 (268)
T ss_dssp TSHHHHHHHHHHSCGGGTSSTTHHHHTS--CHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHhCcHHhhChHHHHHHhc--CHHHHHHHHHHHHhc
Confidence 99888888875210 0 112334443 367788777777776
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.00 E-value=2 Score=39.11 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=97.0
Q ss_pred hhCCHHHHHHHHhcC-----------CHHHHHHHHHHHHHhccchhhHHHHHHh-CCHHHHHHHHhcCCHHHHHHHHHHH
Q 007131 426 KDGGIRLLLDLAKSW-----------REGLQSEAAKAIANLSVNAKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGL 493 (617)
Q Consensus 426 ~~~~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~~~~a~~~L 493 (617)
..+|+..|+..|..- +.+.+..++.+|..+..+..+...+... +++..++..|.++++.++..|+..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 467777777776531 3466888899999999988888877764 4588888888888999999999999
Q ss_pred HHhcCCcc--h-HHHHH----------hcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------hHHHHHh
Q 007131 494 WNLSVGEE--H-KGAIA----------DAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------SMEVALA 553 (617)
Q Consensus 494 ~nL~~~~~--~-~~~i~----------~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~i~~~ 553 (617)
..+|..++ + ...+. +..-...+++.+.. ....+.+.+++..+-.+....+. |..+...
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~ 198 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL 198 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 88886543 3 33332 23455667776652 35567777777777777655543 4455555
Q ss_pred CCHHHHHHHHhcCCchhHHHH
Q 007131 554 GGVHALVMLARSCKFEGVQEQ 574 (617)
Q Consensus 554 ~~~~~L~~ll~~~~~~~~~~~ 574 (617)
|. ..+++-++...++++..+
T Consensus 199 Gl-~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 199 GL-HQVLQELREIENEDMKVQ 218 (233)
T ss_dssp TH-HHHHHHHHHCCCHHHHHH
T ss_pred Ch-HHHHHHHhccCCHHHHHH
Confidence 55 444455554434555444
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.03 Score=55.27 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=55.2
Q ss_pred eEeecCCCCCCH--HHHhcCcCCCeecccC-CCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEc
Q 007131 209 DIGFLDCLNVDE--VALGNVLSVRFLSVAG-TSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCA 285 (617)
Q Consensus 209 ~L~l~~~~~~~~--~~l~~~~~L~~L~l~~-~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 285 (617)
.++.+++..++. . +..+++|++|++++ | .++.-. ...+.++++|+.|+|++|.++... +..+.++++|+.|+|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLE-LRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEEC-GGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcC-hhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeC
Confidence 345555422332 2 77788999999996 5 443211 122457899999999999876532 345678999999999
Q ss_pred cCCCCCC
Q 007131 286 LNCPVLE 292 (617)
Q Consensus 286 ~~c~~~~ 292 (617)
++|.+..
T Consensus 88 ~~N~l~~ 94 (347)
T 2ifg_A 88 SFNALES 94 (347)
T ss_dssp CSSCCSC
T ss_pred CCCccce
Confidence 9998654
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.39 Score=45.42 Aligned_cols=175 Identities=16% Similarity=0.025 Sum_probs=101.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhccchh---hHHHHH-HhC-CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc----chH
Q 007131 433 LLDLAKSWREGLQSEAAKAIANLSVNAK---VAKAVA-EEG-GINILAVLARSMNRLVAEEAAGGLWNLSVGE----EHK 503 (617)
Q Consensus 433 Lv~lL~~~~~~~~~~a~~~L~~ls~~~~---~~~~i~-~~~-~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~----~~~ 503 (617)
|-+-|.+.+...|..|...|..+..... ..+... ..+ ..+.+-..+.+.|..++..|+.++..++..- ..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5577888999999999998887665322 112211 122 2456667788899999999999998886432 111
Q ss_pred H--HHHhcCChHHHHHH-HhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 504 G--AIADAGGVKALVDL-IFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 504 ~--~i~~~g~i~~L~~l-l~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
. ...-...++.|+.- + .+....++..|..++..++........+ ++.+...+.+.+ ++++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l---~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~Kn-pkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGL---TSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKKL-PKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCSC-HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhccC-HHHHHHHHHHHH
Confidence 1 11123355666553 4 3567788888988888776433322222 234445555654 788888888887
Q ss_pred HHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 581 NLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 581 ~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+-..-..........+ ..+++.+..++.+.+++||
T Consensus 165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR 200 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVR 200 (278)
T ss_dssp HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHH
T ss_pred HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHH
Confidence 76542111110100000 1234455666777776665
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.082 Score=53.14 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=15.0
Q ss_pred cCCCCceEeecCC-CCCCHHHHhcCcCCCeecc
Q 007131 203 LCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSV 234 (617)
Q Consensus 203 ~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l 234 (617)
.|++|+.+.+... ..+.+.++.+|.+|+.+.|
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCcCEEEeCCcccEehHhHhhCCCCCCEEEE
Confidence 4455555555332 2233344455555555555
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=9.2 Score=36.42 Aligned_cols=197 Identities=10% Similarity=-0.001 Sum_probs=144.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~ 459 (617)
..++.-+..-+-+.+..+..+..++.+.....+ .-....+.. -|.++..|-.+ ++++--.+=..|+.++.++
T Consensus 81 ~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~---~p~v~Yl~~---~peil~~L~~gYe~~diAl~~G~mLRecir~e 154 (341)
T 1upk_A 81 STLVADLQLIDFEGKKDVAQIFNNILRRQIGTR---TPTVEYICT---QQNILFMLLKGYESPEIALNCGIMLRECIRHE 154 (341)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB---CHHHHHHHT---CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSH
T ss_pred HHHHHhcccCCchhhccHHHHHHHHHhcccCCC---CchhHHHHc---CHHHHHHHHHhhccchhHhHHHHHHHHHHHhH
Confidence 677777777777888999999998877655442 112233433 14444444332 6777777778899999999
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHHHHHhc---CChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADA---GGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~---g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.....+...+.+..+.+....++=++...|..++..|- .++.....+... ..+...-.+| .+++--.++.++.
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll---~S~NYVTkRQSlK 231 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL---HSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT---TCSSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh---cCCcchhHHHHHH
Confidence 98888888888889999998899899999988888774 444555555552 2445566677 4678789999999
Q ss_pred HHHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 536 ALANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 536 ~L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
.|+.+-.+..+...|... .-+..++.+|++.. ..++..|..+..-..+.+..
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCC
Confidence 999999998887766553 33677888888874 89999999998887775444
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=91.10 E-value=0.11 Score=47.94 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=15.2
Q ss_pred hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHH
Q 007131 547 SMEVALAGGVHALVMLARSCKFEGVQEQAARA 578 (617)
Q Consensus 547 ~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~ 578 (617)
|..+.+.-+.+.|..+ .++ +..|+..|...
T Consensus 211 R~~aa~~l~~~~L~~L-~D~-~~~VR~aa~~~ 240 (244)
T 1lrv_A 211 RLAAVEHASLEALREL-DEP-DPEVRLAIAGR 240 (244)
T ss_dssp HHHHHHHSCHHHHHHC-CCC-CHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHc-cCC-CHHHHHHHHHH
Confidence 3333333334445444 444 47777777644
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.22 Score=50.71 Aligned_cols=204 Identities=14% Similarity=0.006 Sum_probs=124.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccC-CchhHHHHHhhCCHHHHHHHHh-c---------CCHHHHHHHHH
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASI-DCGRAEAVMKDGGIRLLLDLAK-S---------WREGLQSEAAK 450 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~i~~~~~i~~Lv~lL~-~---------~~~~~~~~a~~ 450 (617)
+.|+..|-++..++|.-|+.+|+.+.+........ +..+ ....-.++-+|. + .-..+|+.|+.
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N------~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD------SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC------TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc------HHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 67777777888999999999999886554321000 0001 022222222222 1 12579999999
Q ss_pred HHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHH
Q 007131 451 AIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530 (617)
Q Consensus 451 ~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 530 (617)
+|+.+ .+-+.. ...+..|+..+....-+++..+.-.|..+ .+.-..+ .++++.++..|. +.+++|+
T Consensus 251 tLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~L--d~Vv~aVL~GL~---D~DDDVR 316 (800)
T 3oc3_A 251 LLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVEDK--DGLCRKLVSLLS---SPDEDIK 316 (800)
T ss_dssp HHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCCH--HHHHHHHHHHTT---CSSHHHH
T ss_pred HHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHHH--HHHHHHHHhhcC---CcccHHH
Confidence 99998 632221 33345555555667889999999999988 1111111 345677777774 5788999
Q ss_pred HHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCc-hhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHh
Q 007131 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKF-EGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLT 609 (617)
Q Consensus 531 ~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll 609 (617)
..|+.+|.-++ .++.-. ..+..+...|.+-++ .......+..|+.|+..+.. + ......+|.|...+
T Consensus 317 AVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~----a--~~dp~LVPRL~PFL 384 (800)
T 3oc3_A 317 LLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE----L--SIPPERLKDIFPCF 384 (800)
T ss_dssp HHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT----C--CCCSGGGGGTGGGG
T ss_pred HHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc----c--ccChHHHHHHHhhh
Confidence 99999999999 222211 233455666654332 34556677888888886642 1 11346778887777
Q ss_pred cCCCCCCC
Q 007131 610 RSPHEGVR 617 (617)
Q Consensus 610 ~~~~~~vr 617 (617)
+++-..||
T Consensus 385 RHtITSVR 392 (800)
T 3oc3_A 385 TSPVPEVR 392 (800)
T ss_dssp TCSSHHHH
T ss_pred cCCcHHHH
Confidence 77655554
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.78 E-value=5.1 Score=36.42 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=109.6
Q ss_pred ccCCccchHHHHhcCh-HHHHHhhccC-----CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc
Q 007131 366 ESNPQGLDDFWLKQGA-GLLLSLMQST-----QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS 439 (617)
Q Consensus 366 ~~~~~~~~~~~~~~~i-~~l~~~l~~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~ 439 (617)
++++.-... +..+.+ -.+..+|+.. .+-++..+++++..|.+.++... -..+.+.+.+|..++.++.
T Consensus 84 Ashpetr~~-Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV------i~fLL~tEiiplCLrime~ 156 (268)
T 2fv2_A 84 ASHPETRSA-FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV------INFLLTTEIIPLCLRIMES 156 (268)
T ss_dssp HHCTTTHHH-HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH------HHHHHHTTHHHHHHHHHHH
T ss_pred HcCcchhhH-HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH------HHHHHhhhHHHHHHHHHhh
Confidence 334444444 457777 4666777543 35678899999999986654321 2456688999999999999
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHHhC--------CHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhc-
Q 007131 440 WREGLQSEAAKAIANLSVNAKVAKAVAEEG--------GINILAV-LARSMNRLVAEEAAGGLWNLSVGEEHKGAIADA- 509 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~--------~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~- 509 (617)
+++-.+..|+-++..+-.++.+-..+.+.. .+..++. +.+.+++.+.+....+-..|+.++..|..+...
T Consensus 157 GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 157 GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 999999999999999998888765554311 1222222 223578889999999999999999888877651
Q ss_pred -CCh--HHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 510 -GGV--KALVDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 510 -g~i--~~L~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
..+ ..+...++ +++.+++--...+.|+
T Consensus 237 P~~Lrd~tf~~~l~----~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 237 PDQLKDTTFAQVLK----DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp CGGGTSSTTHHHHT----SCHHHHHHHHHHHHHS
T ss_pred cHHhhChHHHHHHh----cCHHHHHHHHHHHHhc
Confidence 111 01223332 4556666555555554
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.30 E-value=9.5 Score=36.15 Aligned_cols=152 Identities=12% Similarity=-0.002 Sum_probs=98.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhc----CCHHHHHHHHHHHHHhcCCcchH
Q 007131 429 GIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARS----MNRLVAEEAAGGLWNLSVGEEHK 503 (617)
Q Consensus 429 ~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~----~~~~~~~~a~~~L~nL~~~~~~~ 503 (617)
.+..+.+++ +-..+.+--+..+++-++.++.....+...+.-..++. ++.. ..+..+--++.++.|+-..+..+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345666665 44556677778888877777776666654433334442 3222 34566788999999999888888
Q ss_pred HHHHhcCChHHHHHHHhh-cCCCCHHHHHHHHHHHHHhccCC---CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHH
Q 007131 504 GAIADAGGVKALVDLIFK-WSSGGDGVLERAAGALANLAADD---KCSMEVALAGGVHALVMLARSCKFEGVQEQAARAL 579 (617)
Q Consensus 504 ~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~---~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L 579 (617)
..+.. -...+++.+.. ..+.+..++..++.++.|++..- ...+... ..+..+..++....+.+....+..+|
T Consensus 183 ~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 183 KLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 87775 23445555443 14467889999999999998521 1111111 13344455565555689999999999
Q ss_pred HHHhcc
Q 007131 580 ANLAAH 585 (617)
Q Consensus 580 ~~l~~~ 585 (617)
.+|...
T Consensus 259 GtL~~~ 264 (304)
T 3ebb_A 259 GTLISD 264 (304)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 999863
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.77 E-value=2.3 Score=39.42 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=70.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
|.+++-+-...+.++..+-.++..+.... --....+.++.-+++.|...++.++..+..+....-.
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~--------------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVV--------------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHH--------------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888887777788888877777664211 1122345666777888999999999999888652111
Q ss_pred HHHHHHhCCH---HHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 462 AKAVAEEGGI---NILAVLARSMNRLVAEEAAGGLWNL 496 (617)
Q Consensus 462 ~~~i~~~~~i---~~L~~lL~~~~~~~~~~a~~~L~nL 496 (617)
. ...++ +.+..++.+.+..|+.+|..++..+
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 23468 9999999999999999999888755
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=2.8 Score=39.76 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHH
Q 007131 395 VQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINIL 474 (617)
Q Consensus 395 ~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L 474 (617)
+...+...|.-| ..+.... +-++..+++..+.....-++.++.+..+..|..+|.....+..- -..-+|.+
T Consensus 259 VvtR~FDLL~LL-mHdSnAI-------DGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi 329 (619)
T 3c2g_A 259 VIIRTFDLLGLL-LHDSDAI-------DGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFL 329 (619)
T ss_dssp HHHHHHHHHHHH-CCSHHHH-------HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHH
T ss_pred HHHHHHHHHHHH-hcccccc-------cceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHH
Confidence 345555555554 4433332 56788999999999999999999999999999887654422110 01236777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhh
Q 007131 475 AVLARS-MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFK 521 (617)
Q Consensus 475 ~~lL~~-~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~ 521 (617)
++.+.- +++++.....+.|.|..... ..++..+..|+++.|-+.+.+
T Consensus 330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 777764 78899999999999998877 567777789999999988765
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.40 E-value=2.2 Score=39.60 Aligned_cols=176 Identities=10% Similarity=-0.030 Sum_probs=111.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHh----cCCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAK----SWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~----~~~~~~~~~a~~~L~~ls~ 457 (617)
+.+...+-+.+...+..|+..|........ ..+ ...+..+++++. +.+..+...++.+|..+..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~----------~~~--~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~ 116 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP----------RSL--LSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVE 116 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH----------HHH--HHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh----------HHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 556667767777777888887776432211 111 122334555543 6788898888888887654
Q ss_pred c---hhhHHHHHHhC-CHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 458 N---AKVAKAVAEEG-GINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 458 ~---~~~~~~i~~~~-~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
. .+.+..-.+.+ .+|.|+.=+....+.+++.+-.++..+..-. --...++.++..+. +.+...+..+
T Consensus 117 ~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~k---sKN~R~R~e~ 187 (266)
T 2of3_A 117 LIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALK---SKNARQRSEC 187 (266)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGG---CSCHHHHHHH
T ss_pred HHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHc---cCCHHHHHHH
Confidence 1 11110001111 2688888888888899998888887765311 01123445556553 4678999999
Q ss_pred HHHHHHhccC-CCchHHHHHhCCH---HHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 534 AGALANLAAD-DKCSMEVALAGGV---HALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 534 ~~~L~~l~~~-~~~~~~i~~~~~~---~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+..+..+-.. +-. ...++ +.+..++.+.+ ..|+..|..++..+-.
T Consensus 188 l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d-~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 188 LLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKD-VNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Confidence 9988888532 222 13467 88888888875 8999999999987764
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.017 Score=58.20 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=49.0
Q ss_pred hcCCCCceEeecCC-CCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC--CCCHHHHHHHHhcCC
Q 007131 202 KLCPNLTDIGFLDC-LNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT--DVGPITISRLLTSSK 278 (617)
Q Consensus 202 ~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~~ 278 (617)
..|++|+.+.+... ..+.+.++..|++|+.+++... ++.-+ ...+.+|.+|+.+++..+ .++..+ +.+|+
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~-~~aF~~c~~L~~i~lp~~l~~I~~~a----F~~C~ 366 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL--VEEIG-KRSFRGCTSLSNINFPLSLRKIGANA----FQGCI 366 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCTTCCEECCCTTCCEECTTT----BTTCT
T ss_pred cccccccccccccccceechhhhcCCCCCCEEEeCCc--ccEEh-HHhccCCCCCCEEEECccccEehHHH----hhCCC
Confidence 35677888877543 2345566778888888887542 22111 122356888888888764 233333 45688
Q ss_pred CCCEEEccCC
Q 007131 279 SLKVLCALNC 288 (617)
Q Consensus 279 ~L~~L~l~~c 288 (617)
+|+.+++...
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 8888887643
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=88.49 E-value=0.24 Score=49.69 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=59.7
Q ss_pred cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCc-cCCcHHHHHHHHhcCCCCceEeecC-CCCCCHHHHhcC
Q 007131 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGI-RDICGDAINALAKLCPNLTDIGFLD-CLNVDEVALGNV 226 (617)
Q Consensus 149 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~l~~~ 226 (617)
+|+.|+.+.++. ....+.+.. ...|.+|+++.+... ..+.+.. ...|.+|+++.+.. ...+.+.++.+|
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~aF~~C 356 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESV----FAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPESAFSNC 356 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGGGGTTC
T ss_pred cccccccccCCC-cccccCcee----ecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHhHhhCC
Confidence 466677776641 222233222 235889999999753 2344433 34789999999965 346777889999
Q ss_pred cCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccC
Q 007131 227 LSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRT 263 (617)
Q Consensus 227 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 263 (617)
++|+.+.+.++. ... .-...|.+|+.+.+..+
T Consensus 357 ~~L~~i~~~~~~----~~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 357 TALNNIEYSGSR----SQW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCCEEEESSCH----HHH-HTCBCCCCC--------
T ss_pred CCCCEEEECCce----eeh-hhhhccCCCCEEEeCCC
Confidence 999999998741 111 12356788888877664
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=87.87 E-value=13 Score=36.78 Aligned_cols=136 Identities=17% Similarity=0.117 Sum_probs=93.4
Q ss_pred hCCHHHHHHHHhcC-----------CHHHHHHHHHHHHHhccchhhHHHHHHh-CCHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 427 DGGIRLLLDLAKSW-----------REGLQSEAAKAIANLSVNAKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGLW 494 (617)
Q Consensus 427 ~~~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~~~~a~~~L~ 494 (617)
.+|+..|+..|..- +.+.+..++.+|..+..+..+...+... +++..++..|...++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 57777788777521 3467888899999999988888777764 45888888888888999989998888
Q ss_pred HhcCCcc--h-HHHH----------HhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------hHHHHHhC
Q 007131 495 NLSVGEE--H-KGAI----------ADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------SMEVALAG 554 (617)
Q Consensus 495 nL~~~~~--~-~~~i----------~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~i~~~~ 554 (617)
.+|..++ + ...+ .+..-...+++.+.. +...+.+..++..+-.+....+. |..+...|
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G 203 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 203 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST--TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 8886543 3 2222 233466667777753 45667777777777777665554 55555555
Q ss_pred CHHHHHHHHhc
Q 007131 555 GVHALVMLARS 565 (617)
Q Consensus 555 ~~~~L~~ll~~ 565 (617)
..+ ++.-++.
T Consensus 204 L~~-il~~Lr~ 213 (386)
T 2bnx_A 204 LHQ-VLQELRE 213 (386)
T ss_dssp HHH-HHHHHTT
T ss_pred hHH-HHHHHhc
Confidence 544 4455554
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.97 E-value=4.8 Score=45.52 Aligned_cols=192 Identities=10% Similarity=0.020 Sum_probs=108.3
Q ss_pred HHHHHhhc-cCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQ-STQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
..+..++. +.++++|..|+.+|.+......... .+.. +..+....++.+...- ...+.++...+.++..++...-
T Consensus 42 ~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l--~~~~-~~~ir~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~ 117 (971)
T 2x1g_F 42 QFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEV--PPEN-REELKQKILESIVRFA-GGPKIVLNRLCISLGAYIVHML 117 (971)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGC--CGGG-HHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhC--CHHH-HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcc
Confidence 56677774 4678999999999999765543332 2222 2223333333333332 2357899999999999887543
Q ss_pred hHHHHHHhCCHHHHHHHHhcC------CHHHHHHHHHHHHHhcCC-----c-chHHHHHh--cCChHHHHHHH----hhc
Q 007131 461 VAKAVAEEGGINILAVLARSM------NRLVAEEAAGGLWNLSVG-----E-EHKGAIAD--AGGVKALVDLI----FKW 522 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~------~~~~~~~a~~~L~nL~~~-----~-~~~~~i~~--~g~i~~L~~ll----~~~ 522 (617)
. ...+.++.++..+.++ ++...+.+..+|..++.. . ..+..+.+ ...++.++.++ ...
T Consensus 118 p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~ 193 (971)
T 2x1g_F 118 G----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQ 193 (971)
T ss_dssp C----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred c----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 3456788899998775 566788888888877631 1 11211111 12455554444 321
Q ss_pred CCCC-----HHHHHHHHHHHHHhcc--CCCchHHHHHhCCHHHHHHHHh-----------c----CCchhHHHHHHHHHH
Q 007131 523 SSGG-----DGVLERAAGALANLAA--DDKCSMEVALAGGVHALVMLAR-----------S----CKFEGVQEQAARALA 580 (617)
Q Consensus 523 ~~~~-----~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~~~~L~~ll~-----------~----~~~~~~~~~a~~~L~ 580 (617)
.+.. ..+...++.|+..... .-+.. .....++.+.. +. + .+.+++++.|+.++.
T Consensus 194 ~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 269 (971)
T 2x1g_F 194 MNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMV 269 (971)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHH
Confidence 1111 1688888888876544 22211 22344555555 31 0 023688889999999
Q ss_pred HHhcc
Q 007131 581 NLAAH 585 (617)
Q Consensus 581 ~l~~~ 585 (617)
.+...
T Consensus 270 ~i~~~ 274 (971)
T 2x1g_F 270 NIIIQ 274 (971)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 88763
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=86.73 E-value=4.2 Score=46.07 Aligned_cols=144 Identities=11% Similarity=-0.020 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-----CCHHHHHHHHHHHHHhccc-hhhHHH
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-----WREGLQSEAAKAIANLSVN-AKVAKA 464 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~ls~~-~~~~~~ 464 (617)
.+...++.++++++.++....+.. ..-.-...++.|+.++.. ....++..++++++..+.- ..+.+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~-------e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~ 537 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDT-------EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF 537 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHH-------HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchh-------HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence 467888999999998864332210 112223456677777753 2233455677888876651 111112
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh------cCChHHHHHHHhh-cCCCCHHHHHHHHHHH
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD------AGGVKALVDLIFK-WSSGGDGVLERAAGAL 537 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~------~g~i~~L~~ll~~-~~~~~~~~~~~a~~~L 537 (617)
+ ...+..|++.|.+.++.++..|++++.+|+.. .+..+.. .-.++.++..+.. ...-+..-...+..++
T Consensus 538 L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai 613 (1023)
T 4hat_C 538 L--RTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC 613 (1023)
T ss_dssp H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 22355566666667889999999999999974 3344432 1134444443322 1234556667777777
Q ss_pred HHhccCCC
Q 007131 538 ANLAADDK 545 (617)
Q Consensus 538 ~~l~~~~~ 545 (617)
+.+...-+
T Consensus 614 ~~vi~~~~ 621 (1023)
T 4hat_C 614 GIIISEER 621 (1023)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 77775443
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=86.31 E-value=6.2 Score=44.57 Aligned_cols=185 Identities=8% Similarity=-0.012 Sum_probs=105.5
Q ss_pred HhhccC---CHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh--
Q 007131 386 SLMQST---QEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK-- 460 (617)
Q Consensus 386 ~~l~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~-- 460 (617)
..+.+. ++-+|..|++++..++..- . + . .-...++.++..|.++++.++..|+.+|.+++...+
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~----~----~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~ 530 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQL--T----K----A-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESN 530 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGS--C----H----H-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhC--C----H----H-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccc
Confidence 334555 8899999999999876431 1 1 1 123356788888888889999999999999887321
Q ss_pred -------hHHHHHH--hCCHHHHHHHHhcCC---HH--HHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHHhh--c
Q 007131 461 -------VAKAVAE--EGGINILAVLARSMN---RL--VAEEAAGGLWNLSVG--EEHKGAIADAGGVKALVDLIFK--W 522 (617)
Q Consensus 461 -------~~~~i~~--~~~i~~L~~lL~~~~---~~--~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~L~~ll~~--~ 522 (617)
.+..+.. ...++.|+.++.... +. ..+.+..+|..++.. ++... .. ...++.|+..+.. .
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~~~ 608 (960)
T 1wa5_C 531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIMAK 608 (960)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHHTT
T ss_pred ccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHHHh
Confidence 1222311 112556666776641 11 224445555544321 11111 11 1133445555543 1
Q ss_pred CCCCHHHHHHHHHHHHHhccC-CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 523 SSGGDGVLERAAGALANLAAD-DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 523 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
...+..+...++.++..++.. ++....-.....++.+...+.... .+....+..++..+..
T Consensus 609 ~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 609 NPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVE 670 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHH
Confidence 234556777788888888765 222222334456777888777543 4566666666666654
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=86.28 E-value=0.27 Score=49.97 Aligned_cols=162 Identities=14% Similarity=-0.021 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHH
Q 007131 393 EDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGIN 472 (617)
Q Consensus 393 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~ 472 (617)
..+|+.|+.+|..+ ..-+.. ...+..++..+.....+++--++-.|..+ .+.-..+ .+.++
T Consensus 242 APVRETaAQtLGaL-~hLp~e-------------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~L--d~Vv~ 302 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-------------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVEDK--DGLCR 302 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-------------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCCH--HHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-------------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHHH--HHHHH
Confidence 56788888888887 332221 22344444445667899999999999988 1111111 33467
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 007131 473 ILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVAL 552 (617)
Q Consensus 473 ~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~ 552 (617)
.++..|.+.+++|+..|+.+|..++ .++.-. ..+..+.+.|.+ -++-..-...++..|+.|+..+... ...
T Consensus 303 aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~-LDDLSASTgSVMdLLAkL~s~p~~a--~~d 373 (800)
T 3oc3_A 303 KLVSLLSSPDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIES-EELISVSKTSNLSLLTKIYRENPEL--SIP 373 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHT-CCSCCTTHHHHHHHHHHHHHHCTTC--CCC
T ss_pred HHHhhcCCcccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhh-hcccchhhHHHHHHHHHHHcCCccc--ccC
Confidence 8888888999999999999999999 222111 123445555554 2222234556667777776544320 011
Q ss_pred hCCHHHHHHHHhcCCchhHHHHHHHHHHHHh
Q 007131 553 AGGVHALVMLARSCKFEGVQEQAARALANLA 583 (617)
Q Consensus 553 ~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~ 583 (617)
...+|.|..++++.- ..|+..+..+|..+.
T Consensus 374 p~LVPRL~PFLRHtI-TSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 374 PERLKDIFPCFTSPV-PEVRTSILNMVKNLS 403 (800)
T ss_dssp SGGGGGTGGGGTCSS-HHHHHHHHHHTTTCC
T ss_pred hHHHHHHHhhhcCCc-HHHHHHHHHHHHHHH
Confidence 245677778888875 788888888887664
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=85.83 E-value=8.6 Score=43.35 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=84.7
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH---hcCCHHHHHHHHHHHHHhccc-hhhHHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA---KSWREGLQSEAAKAIANLSVN-AKVAKA 464 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL---~~~~~~~~~~a~~~L~~ls~~-~~~~~~ 464 (617)
.+.+...++.++.++..++....... ...++.++..+ .++++.++..+++++..++.. .++...
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~------------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~ 526 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY------------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM 526 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC------------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh------------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 34566778888889998875533321 12334455444 234688999999999998863 222222
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHH----HHHHhhcCCCCHHHHHHHHHHHHHh
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKAL----VDLIFKWSSGGDGVLERAAGALANL 540 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L----~~ll~~~~~~~~~~~~~a~~~L~~l 540 (617)
+ ...++.++..|.+ +.++..|+.++.+++.. .+..+. ..++.+ ..++.. ...+...+..+..+++.+
T Consensus 527 l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~--p~~~~il~~l~~~l~~-~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 527 I--NSVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLP--PYAANIVAVSQDVLMK-QIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp H--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCT--TTHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHH--hhHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHH
Confidence 2 4567888888854 78999999999999843 222222 234444 444442 233567888888888888
Q ss_pred ccC
Q 007131 541 AAD 543 (617)
Q Consensus 541 ~~~ 543 (617)
+..
T Consensus 598 ~~~ 600 (963)
T 2x19_B 598 LSA 600 (963)
T ss_dssp HTT
T ss_pred Hhc
Confidence 753
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=85.39 E-value=6 Score=39.03 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=80.9
Q ss_pred HHHHhCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHH
Q 007131 464 AVAEEGGINILAVLARS-----------MNRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLE 531 (617)
Q Consensus 464 ~i~~~~~i~~L~~lL~~-----------~~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~ 531 (617)
.++ .+|+..|+++|.. .+......++.+|..+.....+...+.+ ..++..|+..| .+..+.++.
T Consensus 105 ~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L---~s~~~~~~~ 180 (383)
T 3eg5_B 105 TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM---DPAVPNMMI 180 (383)
T ss_dssp HHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC---CTTSHHHHH
T ss_pred HHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh---CCCchHHHH
Confidence 344 6788888888863 1346677889999999887777776766 67788888888 467889999
Q ss_pred HHHHHHHHhccCCC--c-hHHHHHh----------CCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 532 RAAGALANLAADDK--C-SMEVALA----------GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 532 ~a~~~L~~l~~~~~--~-~~~i~~~----------~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.|+..|..+|..++ + ...+.++ .-+..++..++++...+.+..++..+-.+..
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 246 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence 99999999997654 3 4444431 2356677777664445555555555545554
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=85.09 E-value=4.6 Score=36.71 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=76.5
Q ss_pred hCCHHHHHHHHhc----C-------CHHHHHHHHHHHHHhcCCcchHHHHHh-cCChHHHHHHHhhcCCCCHHHHHHHHH
Q 007131 468 EGGINILAVLARS----M-------NRLVAEEAAGGLWNLSVGEEHKGAIAD-AGGVKALVDLIFKWSSGGDGVLERAAG 535 (617)
Q Consensus 468 ~~~i~~L~~lL~~----~-------~~~~~~~a~~~L~nL~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~a~~ 535 (617)
.+|+..|+.+|.. . +......++.+|..+.....+...+.+ .+++..++..| .+.+..++..|+.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L---~s~~~~~r~~~le 118 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM---DPAVPNMMIDAAK 118 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTC---CTTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHh---CCCCchHHHHHHH
Confidence 5677777777653 1 235677889999999888777777766 66787787777 4678899999999
Q ss_pred HHHHhccCCC--c-hHHHHHh----------CCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 536 ALANLAADDK--C-SMEVALA----------GGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 536 ~L~~l~~~~~--~-~~~i~~~----------~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
.|..+|..++ + ...+.++ .-+..+++.++.....+.+..++..+-.+..
T Consensus 119 LL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~ 180 (233)
T 2f31_A 119 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 180 (233)
T ss_dssp HHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC
Confidence 9999997654 5 5555432 1345566666644434555555544444554
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=83.38 E-value=0.27 Score=45.28 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=20.2
Q ss_pred hhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHH
Q 007131 419 GRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKA 451 (617)
Q Consensus 419 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~ 451 (617)
.-|......-....+..+++++++.+|..++..
T Consensus 65 ~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 65 ERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp HHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHH
Confidence 334444444344556666777788888887754
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=81.27 E-value=7.8 Score=43.80 Aligned_cols=132 Identities=12% Similarity=0.014 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHH---h--cCCHHHHHHHHHHHHHhccch-hhHHH
Q 007131 391 TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLA---K--SWREGLQSEAAKAIANLSVNA-KVAKA 464 (617)
Q Consensus 391 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL---~--~~~~~~~~~a~~~L~~ls~~~-~~~~~ 464 (617)
.+...++.|+.++..++....... ...++.++.++ . +.++.++..+++++..++..- ++...
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~------------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~ 543 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE------------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY 543 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh------------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 455677888888888864433221 13445555544 2 237889999999999988621 11111
Q ss_pred HHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Q 007131 465 VAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAAGALANLAA 542 (617)
Q Consensus 465 i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~ 542 (617)
+ ...++.|+..| + +.++..|+.++.+++.. .+..+.- ...+..+..++.. +..+...+..+..++..++.
T Consensus 544 l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~-~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 544 I--PPAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNT-GRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp H--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHH
Confidence 1 12356666667 2 67899999999999943 3333332 2344555566653 22456788888888888865
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=80.48 E-value=6.6 Score=44.44 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhccchhh-HHHHHHhCCHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 440 WREGLQSEAAKAIANLSVNAKV-AKAVAEEGGINILAVLARS-----MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 440 ~~~~~~~~a~~~L~~ls~~~~~-~~~i~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
.+...++.++.+++.++..... .+.-.-...++.|+.++.. ....++..++++++..+..-..... .++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-----~L~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-----FLR 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-----HHH
Confidence 4688999999999999984321 1211113357888888864 2223344566777766542221122 244
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHhccCCCchHHHHH------hCCHHHHHHHH----hcCCchhHHHHHHHHHHHH
Q 007131 514 ALVDLIFKW-SSGGDGVLERAAGALANLAADDKCSMEVAL------AGGVHALVMLA----RSCKFEGVQEQAARALANL 582 (617)
Q Consensus 514 ~L~~ll~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~------~~~~~~L~~ll----~~~~~~~~~~~a~~~L~~l 582 (617)
+++..|..+ ++.+++++.+|++++.++|.. .+..+.. ...++.++..+ ..- +.+-...+..++..+
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADL-QPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 444444331 346688999999999999963 3444432 12344444422 222 356667777888877
Q ss_pred hcc
Q 007131 583 AAH 585 (617)
Q Consensus 583 ~~~ 585 (617)
...
T Consensus 617 i~~ 619 (1023)
T 4hat_C 617 ISE 619 (1023)
T ss_dssp HTT
T ss_pred HHh
Confidence 763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 617 | ||||
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-14 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-11 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-11 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-12 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-11 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-11 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-06 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.003 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 1e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-04 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 2e-08 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 1e-06 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 2e-06 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 2e-06 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 3e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.2 bits (180), Expect = 2e-14
Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 23/173 (13%)
Query: 411 DENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGG 470
N ++ + + G I L+ L + Q + V
Sbjct: 380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR-------- 431
Query: 471 INILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVL 530
+ E G L L+ ++ I + V L+ S + +
Sbjct: 432 -----------MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL---YSPIENIQ 477
Query: 531 ERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLA 583
AAG L LA D + + + G L L S + EGV AA L ++
Sbjct: 478 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 30/137 (21%), Positives = 48/137 (35%), Gaps = 14/137 (10%)
Query: 375 FWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDE--------------NASIDCGR 420
+ L+ L+ +D Q R + G + + D
Sbjct: 393 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN 452
Query: 421 AEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARS 480
+ I L + L S E +Q AA + L+ + + A+A+ EG L L S
Sbjct: 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 512
Query: 481 MNRLVAEEAAGGLWNLS 497
N VA AA L+ +S
Sbjct: 513 RNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (152), Expect = 4e-11
Identities = 37/166 (22%), Positives = 59/166 (35%), Gaps = 5/166 (3%)
Query: 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGI--NILAVLAR 479
+A + I L L + + ++AA + LS A+ + I+ +
Sbjct: 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 480 SMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539
+ + A AG L NLS E AI +GG+ ALV ++ S D VL A L N
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML---GSPVDSVLFYAITTLHN 127
Query: 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585
L + + G ++ + L LA
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.1 bits (146), Expect = 2e-10
Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 24/160 (15%)
Query: 477 LARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI----------------- 519
L + + + G + NL++ + + + G + LV L+
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423
Query: 520 --FKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAAR 577
F + ++E GAL LA D + + + V L S E +Q AA
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAG 482
Query: 578 ALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
L LA + + + GA L +L S +EGV
Sbjct: 483 VLCELAQDKE----AAEAIEAEGATAPLTELLHSRNEGVA 518
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 1e-09
Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 11/204 (5%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWRE 442
L L+ + V +AA + + + R + + ++ + +
Sbjct: 22 LTKLLNDEDQVVVNKAAVMVHQL-------SKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74
Query: 443 GLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEE- 501
A + NLS + + A+ + GGI L + S V A L NL + +E
Sbjct: 75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVM 561
K A+ AGG++ +V L+ K + + LA + + + + +GG ALV
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALVN 192
Query: 562 LARSCKFEGVQEQAARALANLAAH 585
+ R+ +E + +R L L+
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVC 216
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 2e-12
Identities = 50/248 (20%), Positives = 85/248 (34%), Gaps = 22/248 (8%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREG 443
+ + S E Q A + ++ + V + GGI L+DL +S +
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAK-------QQVYQLGGICKLVDLLRSPNQN 59
Query: 444 LQSEAAKAIANLSVNAKVAK-AVAEEGGINILAVLARSMNRL-VAEEAAGGLWNLSVGEE 501
+Q AA A+ NL + K + GI L R + ++ G LWNLS +E
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119
Query: 502 HKGAIADAGGVKALVDLIFKWSSGGDG------------VLERAAGALANLAADDK-CSM 548
K + +I +S DG V A G L NL++ D
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179
Query: 549 EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQL 608
+G + +L+ ++C + + H S ++ V LE +
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239
Query: 609 TRSPHEGV 616
+
Sbjct: 240 AYTEKSST 247
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 60/425 (14%), Positives = 121/425 (28%), Gaps = 31/425 (7%)
Query: 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAG 236
KL L S +++ A AL L T N E N +
Sbjct: 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT-------NKLETRRQNGIRE--AVSLL 95
Query: 237 TSNMKWGVVSQVWHKLPKLVGLDVSRTDV---GPITISRLLTSSKSLKVLCALNCPVLEE 293
+ Q+ L L D + ++ ++ + S N
Sbjct: 96 RRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155
Query: 294 ENNISAVKSKGKLLLALFTDIFKALASLFAETTKNEKNVFLDWRNSKNKDKNLNEIMTWL 353
+ + + L+ + + + V S+ DK++ M L
Sbjct: 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215
Query: 354 EWILSHILLRTAESNPQGLDDFWLKQGAGLLLSLMQSTQEDVQERAATGLATFVVINDEN 413
+ + Q + + + +
Sbjct: 216 HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLP-------E 268
Query: 414 ASIDCGRAEAVMKDGGIRLLLDLA-KSWREGLQSEAAKAIANLSVNAK------VAKAVA 466
+ + + IR L+L KS ++ A A+ NL+ +
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328
Query: 467 EEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLI---FKWS 523
+E G+ +A L +S N V A L N+S + + + L+ +
Sbjct: 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNT 387
Query: 524 SGGDGVLERAAGALANLAADDKCS-MEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582
S + +L A + NL A + + ++ ++ L RS E A L+++
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
Query: 583 AAHGD 587
+ +
Sbjct: 448 WSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 18/176 (10%)
Query: 430 IRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEE 488
I + S E Q+ A I + + + V + GGI L L RS N+ V +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 489 AAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCS 547
AAG L NL +K G++ V L+ + G + ++ G L NL++ D+
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLWNLSSTDELK 121
Query: 548 MEVA--------------LAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589
E+ +G ++R V A L NL++
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 2e-06
Identities = 33/240 (13%), Positives = 65/240 (27%), Gaps = 21/240 (8%)
Query: 388 MQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLL--DLAKSWREGLQ 445
+ E L D + E ++ + + +
Sbjct: 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMN 259
Query: 446 SEAAKAIANLSVNAKVAKAVAEEGGINIL-AVLARSMNRLVAEEAAGGLWNLSVGEEH-- 502
+ + N K + + I ++ +S E AG L NL+ +
Sbjct: 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319
Query: 503 ----KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHA 558
+ G+ + L+ SG V+ A L+N++ +
Sbjct: 320 SGMSQLIGLKEKGLPQIARLL---QSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPE 375
Query: 559 LVMLARS-----CKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613
+ L S E + A + NL A + + L ++ L RS
Sbjct: 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMAS---QPQLAKQYFSSSMLNNIINLCRSSA 432
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.003
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 565 SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
S + E Q A + + + + + G + LV L RSP++ V+
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQ---DESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.6 bits (140), Expect = 1e-09
Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 10/192 (5%)
Query: 430 IRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAK--AVAEEGGINILAVLARS-MNRLVA 486
+ + S Q A + V + G + L R ++
Sbjct: 78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137
Query: 487 EEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545
EAA L N++ G + DA V + L+ +G V E+A AL N+A D
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL---YTGSVEVKEQAIWALGNVAGDST 194
Query: 546 CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEAL 605
+ L ++ + + A L+NL + AL L
Sbjct: 195 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG---KKPQPDWSVVSQALPTL 251
Query: 606 VQLTRSPHEGVR 617
+L S
Sbjct: 252 AKLIYSMDTETL 263
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (136), Expect = 3e-09
Identities = 41/197 (20%), Positives = 79/197 (40%), Gaps = 12/197 (6%)
Query: 384 LLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWRE 442
++ + S + Q +A + ++ ID +++ G I + L K+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSR-EKQPPID-----NIIRAGLIPKFVSFLGKTDCS 71
Query: 443 GLQSEAAKAIANL-SVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNL-SVGE 500
+Q E+A A+ N+ S ++ KAV + G I L S + ++E+A L N+ G
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131
Query: 501 EHKGAIADAGGVKALVDLIFK--WSSGGDGVLERAAGALANLAADDKCSME-VALAGGVH 557
+ + G + L+ L+ S+ G L L+NL + + A+ +
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191
Query: 558 ALVMLARSCKFEGVQEQ 574
LV L E + +
Sbjct: 192 TLVRLLHHNDPEVLADS 208
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 517 DLIFKWSSGGDGVLERAAGALANLAADDKCSM--EVALAGGVHALVMLARSCKFEGVQEQ 574
D++ +S +A A L + +K + AG + V +Q +
Sbjct: 17 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFE 76
Query: 575 AARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617
+A AL N+A+ S + + GA+ A + L SPH +
Sbjct: 77 SAWALTNIASG---TSEQTKAVVDGGAIPAFISLLASPHAHIS 116
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 477 LARSMNRLVAEEAAGGLWNLSVGEEHK--GAIADAGGVKALVDLIFKWSSGGDGVLERAA 534
S N +A L E+ I AG + V + K + +A
Sbjct: 21 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC--SPIQFESA 78
Query: 535 GALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSN 589
AL N+A+ + + GG + + + EQA AL N+A G +
Sbjct: 79 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 414 ASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV--AKAVAEEGGI 471
+ + + V+ G + L+ + Q EAA AI N + V + G I
Sbjct: 300 TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 359
Query: 472 NILAVLARSMNRLVAEEAAGGLWNLSVGEEHKG-------AIADAGGVKALVDLIF 520
L L + + + + + N+ E G I + GG+ + L
Sbjct: 360 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (115), Expect = 2e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80
W SLPD+ ++ + SCL + +S C+ W L + LW
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (106), Expect = 1e-06
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGAS-PCLWSSLDLR 86
TSLP + +++ + L + D + + W + LW L +
Sbjct: 6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS 53
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 2e-06
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 41 TSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAM 94
D ++S L+ + + C+ W + + LW L R + D
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLW 69
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 2e-06
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCD 91
+ LP + + ++S L +D + TCR WR L LW +
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDE 70
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 3e-06
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 15/242 (6%)
Query: 378 KQGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-L 436
+ Q+ + +E A LA D A + G+ LL+
Sbjct: 16 QPMPPTAGEAEQAADQQEREGALELLADLCENMDN--------AADFCQLSGMHLLVGRY 67
Query: 437 AKSWREGLQSEAAKAIANLS-VNAKVAKAVAEEGGIN-ILAVLARSMNRLVAEEAAGGLW 494
++ GL+ AA+ I S A + + V G + +L +L R V +A +
Sbjct: 68 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127
Query: 495 NLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAG 554
L +E +++ + + ++A L NL +
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQV--QKLKVKSAFLLQNLLVGHPEHKGTLCSM 185
Query: 555 GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA--GALEALVQLTRSP 612
G+ ++ + E AL +L + L QL +
Sbjct: 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245
Query: 613 HE 614
E
Sbjct: 246 EE 247
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 44/249 (17%), Positives = 88/249 (35%), Gaps = 6/249 (2%)
Query: 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLA 99
+L D +L+S R S + + + +DL +++ +
Sbjct: 9 GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEVSTLHGIL 67
Query: 100 SRCMNLQKLRFRGAESADSIIHLQAR--NLRELSGDYCRKITDATLSVIVARHEALESLQ 157
S+C LQ L G +D I++ A+ NL L+ C ++ L +++ L+ L
Sbjct: 68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127
Query: 158 LGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN 217
L F V + + +++ ++ L + CPNL + D +
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187
Query: 218 VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWH--KLPKLVGLDVSRTDVGPITISRLLT 275
+ + +L S + + ++P L L V V T+ L
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE 246
Query: 276 SSKSLKVLC 284
+ L++ C
Sbjct: 247 ALPHLQINC 255
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.004
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 153 LESLQLGPDFCERITSDAVKAIALCCPKLKKLRLS--GIRDICGDAINALAKLCPNLTDI 210
++SL + CE ++ + + + +RL G+ + I++ ++ P L ++
Sbjct: 4 IQSLDIQ---CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 617 | |||
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.88 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.84 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.75 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.73 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.73 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.71 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.7 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.69 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.37 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.31 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.26 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.03 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.8 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.8 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.78 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.72 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.69 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.66 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.65 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.62 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.61 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.6 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.58 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.57 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.44 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 98.38 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.37 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.37 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.37 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.29 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.27 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.09 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.08 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.07 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.02 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.0 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 97.98 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.93 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 97.89 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.8 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 97.77 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.68 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.61 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 97.58 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.55 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 97.48 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.46 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.4 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.36 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.32 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.18 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 97.1 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.01 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 96.99 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 96.94 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 96.7 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.68 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.59 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.51 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 96.23 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 96.13 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 96.02 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 95.7 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 95.68 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 95.46 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.35 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 95.14 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 94.18 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 94.05 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 93.73 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.28 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 93.22 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.96 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 89.93 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 89.55 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 85.4 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.4e-22 Score=195.30 Aligned_cols=245 Identities=22% Similarity=0.316 Sum_probs=193.6
Q ss_pred CCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH
Q 007131 41 TSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII 120 (617)
Q Consensus 41 ~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 120 (617)
..++++.+..+++.-...-+..-..+...+.... .+...+++|+++..++.+.+..+...|++|++|++++|...+..+
T Consensus 10 ~~l~~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~-~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~ 88 (284)
T d2astb2 10 KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 88 (284)
T ss_dssp CBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred CCCCchHHHHHHhccceEeeccccccccchhhhc-cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHH
Confidence 4678888888876532111111111111121111 122347888888889999999999999999999999997766544
Q ss_pred Hh--cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHH-HHhcCCCCCeeeccCcc-CCcHHH
Q 007131 121 HL--QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKA-IALCCPKLKKLRLSGIR-DICGDA 196 (617)
Q Consensus 121 ~~--~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~-l~~~~~~L~~L~l~~~~-~i~~~~ 196 (617)
.. .+++|++|++++|..+++.++..+...|++|++|+++ +|..+++.++.. +...+++|+.|++++|. .+++.+
T Consensus 89 ~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls--~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~ 166 (284)
T d2astb2 89 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS--WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166 (284)
T ss_dssp HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC--CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred HHHhcCCCCcCccccccccccccccchhhHHHHhccccccc--cccccccccchhhhcccccccchhhhccccccccccc
Confidence 33 7899999999999999999999999999999999995 699999998865 55667899999999873 589999
Q ss_pred HHHHHhcCCCCceEeecCCCCCCHHHH---hcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHH
Q 007131 197 INALAKLCPNLTDIGFLDCLNVDEVAL---GNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRL 273 (617)
Q Consensus 197 l~~l~~~~~~L~~L~l~~~~~~~~~~l---~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~ 273 (617)
+..++..||+|++|++++|..+++.++ ..+++|++|++++|..+++.++..+ ..+|+|++|+++++ +++.++..+
T Consensus 167 l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~-~~d~~l~~l 244 (284)
T d2astb2 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDGTLQLL 244 (284)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SCTTCHHHH
T ss_pred ccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC-CCHHHHHHH
Confidence 999999999999999999988998654 6789999999999999999988776 46999999999998 778888888
Q ss_pred HhcCCCCCEEEccCCCCCChh
Q 007131 274 LTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 274 ~~~~~~L~~L~l~~c~~~~~~ 294 (617)
...+|+|+. +|..+++.
T Consensus 245 ~~~lp~L~i----~~~~ls~~ 261 (284)
T d2astb2 245 KEALPHLQI----NCSHFTTI 261 (284)
T ss_dssp HHHSTTSEE----SCCCSCCT
T ss_pred HHhCccccc----cCccCCCC
Confidence 888999874 35445443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.4e-20 Score=181.01 Aligned_cols=212 Identities=21% Similarity=0.298 Sum_probs=157.0
Q ss_pred cccccCCCCCCCCHHHHHHHHHhCCCceEEEecCCCCccHHH-HhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEE
Q 007131 79 LWSSLDLRAHKCDIAMAASLASRCMNLQKLRFRGAESADSII-HLQARNLRELSGDYCRKITDATLSVIVARHEALESLQ 157 (617)
Q Consensus 79 ~w~~l~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~ 157 (617)
+|+++|+++..+..+.+..+... .+..+.+.......... .....+|++|++++|. +++..+..+...|++|++|+
T Consensus 1 LW~~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~ 77 (284)
T d2astb2 1 LWQTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLS 77 (284)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHT--TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEE
T ss_pred CcCEEECCCCCCCchHHHHHHhc--cceEeeccccccccchhhhccCCCCCEEECCCCc-cCHHHHHHHHHhCCCccccc
Confidence 69999999988888888888765 34455554332211111 1244578888888875 77878888888888888888
Q ss_pred EcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHH-----hcCcCCCee
Q 007131 158 LGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVAL-----GNVLSVRFL 232 (617)
Q Consensus 158 l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l-----~~~~~L~~L 232 (617)
+. +| .+++..+..++. +++|++|++++|..+++.++..+++.||+|++|++++|..+++.++ ..+++|++|
T Consensus 78 L~--~~-~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L 153 (284)
T d2astb2 78 LE--GL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 153 (284)
T ss_dssp CT--TC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred cc--cc-CCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchh
Confidence 85 46 677877777765 7888888888887888888888888888888888888877887654 235788888
Q ss_pred cccCC-CCCCHHHHHHHHhcCCCCCeEEeccC-CCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHHH
Q 007131 233 SVAGT-SNMKWGVVSQVWHKLPKLVGLDVSRT-DVGPITISRLLTSSKSLKVLCALNCPVLEEENNIS 298 (617)
Q Consensus 233 ~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~~ 298 (617)
++++| ..+++.++..+..+||+|++|+++++ .+++..+..+ ..+++|++|++++|..+++.++..
T Consensus 154 ~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~~~L~~L~L~~C~~i~~~~l~~ 220 (284)
T d2astb2 154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLE 220 (284)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGG
T ss_pred hhcccccccccccccccccccccccccccccccCCCchhhhhh-cccCcCCEEECCCCCCCChHHHHH
Confidence 88876 35788888888888888888888874 4677665544 458888888888888787776443
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.7e-19 Score=187.97 Aligned_cols=221 Identities=23% Similarity=0.223 Sum_probs=190.9
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHH-hhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 007131 380 GAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVM-KDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (617)
Q Consensus 380 ~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~-~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~ 457 (617)
.+|.|+++|++++..++..|+.++.+++..... +..+. ..|+++.|+++|... ++++++.|+.+|++++.
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~--------~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~ 89 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS--------RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH--------HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHH--------HHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 359999999999999999999999999754322 23444 567899999999875 78999999999999999
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
+++.+..+++.||++.|+.+|+++++++++.|+++|+|++.+. ..+..+.+.|+++.|+.+|. ++++.++..++++
T Consensus 90 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~~~~~~~~~a~~~ 166 (529)
T d1jdha_ 90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDC 166 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG---CCCHHHHHHHHHH
T ss_pred CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHH---ccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999765 46677788999999999995 5788999999999
Q ss_pred HHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCC
Q 007131 537 LANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 537 L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
|.+++..+ +.+..+.+.|+++.++.++.+.+.+.++..+++++.+++.+.+ ....+.+.|+++.|+.++.+++.+
T Consensus 167 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~----~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T d1jdha_ 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc----ccchhhhhhhhhhHHHHhcccchh
Confidence 99999765 4577788899999999999877768999999999999987433 456677899999999999876643
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.6e-18 Score=180.28 Aligned_cols=218 Identities=22% Similarity=0.227 Sum_probs=188.4
Q ss_pred hHHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 381 AGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 381 i~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
++.++++|.. ++++++..|+.+|.+|+... ..+..+.+.|+++.|+++|++++++++..|+++|.+++.+.
T Consensus 61 v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~--------~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~ 132 (529)
T d1jdha_ 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR--------EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--------HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--------hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence 3889999954 67899999999999996432 23368899999999999999999999999999999999854
Q ss_pred -hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 -KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 -~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
..+..+.+.|+++.|+.+|++++++++..++.+|.+++.. ++.+..+.+.|+++.|+.++.. .....++..+++++
T Consensus 133 ~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~~~~~~l 210 (529)
T d1jdha_ 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRVL 210 (529)
T ss_dssp TTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred chhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHh--hhhHHHHHHHHHHH
Confidence 4677888999999999999999999999999999999965 4678888899999999999974 55678999999999
Q ss_pred HHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCC
Q 007131 538 ANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 538 ~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
.+++.+++++..+.+.|+++.|+.++.+++ .+++..|++++.+++..... .....|+++.|++++.+++..
T Consensus 211 ~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~l~~ls~~~~~------~~~~~~~i~~Lv~ll~~~~~~ 281 (529)
T d1jdha_ 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATK------QEGMEGLLGTLVQLLGSDDIN 281 (529)
T ss_dssp HHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTT------CSCCHHHHHHHHHHTTCSCHH
T ss_pred hhhhccccccchhhhhhhhhhHHHHhcccc-hhhhhhhhhHHHhccccccc------hhhhhhcchhhhhhcccccHH
Confidence 999999999999999999999999998875 89999999999999853322 222468999999999877653
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.75 E-value=9.5e-18 Score=172.15 Aligned_cols=228 Identities=20% Similarity=0.226 Sum_probs=188.8
Q ss_pred cChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcc
Q 007131 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW-REGLQSEAAKAIANLSV 457 (617)
Q Consensus 379 ~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~ls~ 457 (617)
..++.+++.+++++++.+..|+.+++++.+..... . ...+.+.|++|.|+++|++. ++++|..|+++|++++.
T Consensus 13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~-~-----~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~ 86 (434)
T d1q1sc_ 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQP-P-----IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 86 (434)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCC-C-----HHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc-h-----HHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 34589999999999999999999999986544332 1 25788999999999999754 68899999999999987
Q ss_pred -chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhc-------------
Q 007131 458 -NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKW------------- 522 (617)
Q Consensus 458 -~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~------------- 522 (617)
+++.+..+++.|+++.++.+|.++++++++.|+++|+|++.+. +.+..+.+.|+++.++.++...
T Consensus 87 ~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 166 (434)
T d1q1sc_ 87 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166 (434)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred CChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHH
Confidence 5678889999999999999999999999999999999999754 6777788889998887765320
Q ss_pred -------------------------------CCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchh
Q 007131 523 -------------------------------SSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEG 570 (617)
Q Consensus 523 -------------------------------~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~ 570 (617)
.+.+++++..+++++.+++..++. ...+...|+++.+++++.+++ .+
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~-~~ 245 (434)
T d1q1sc_ 167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LP 245 (434)
T ss_dssp HHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HH
T ss_pred HHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccch-hh
Confidence 114677888999999999977654 455677899999999999885 89
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
++..|+.+|.+++...+. ....+.+.|+++.|+.+++++++++
T Consensus 246 ~~~~al~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~v 288 (434)
T d1q1sc_ 246 IVTPALRAIGNIVTGTDE---QTQKVIDAGALAVFPSLLTNPKTNI 288 (434)
T ss_dssp HHHHHHHHHHHHTTSCHH---HHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred hhhchhhhhhhHHhhhhH---HHHHHHhccccchHHHhhcccchhh
Confidence 999999999999874332 4556678999999999999877654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=2.1e-17 Score=173.21 Aligned_cols=233 Identities=22% Similarity=0.200 Sum_probs=194.1
Q ss_pred CccchHHHHhcCh-HHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHH
Q 007131 369 PQGLDDFWLKQGA-GLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQS 446 (617)
Q Consensus 369 ~~~~~~~~~~~~i-~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~ 446 (617)
.+....+ .+.|+ +.|++++.. .+++++..|+++|.+++...+.. ...+.+.|+++.++.+|.+++.+++.
T Consensus 109 ~~~i~~i-i~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~-------~~~~~~~g~i~~l~~lL~s~~~~i~~ 180 (503)
T d1wa5b_ 109 RPPIDVV-IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ-------TKVVVDADAVPLFIQLLYTGSVEVKE 180 (503)
T ss_dssp SCSHHHH-HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTCHHHHHHHHHHCCHHHHH
T ss_pred CchHHHH-HHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHhCCChHHHHHHhcCCChhHHH
Confidence 3334444 45554 999999975 56889999999999998655433 36788999999999999999999999
Q ss_pred HHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcch-HHHHHhcCChHHHHHHHhhcCC
Q 007131 447 EAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEH-KGAIADAGGVKALVDLIFKWSS 524 (617)
Q Consensus 447 ~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~-~~~i~~~g~i~~L~~ll~~~~~ 524 (617)
.|+++|+||+. +++.+..+.+.|+++.|+.++...++.++..++++|+|++..... .......++++.++.++. +
T Consensus 181 ~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~---~ 257 (503)
T d1wa5b_ 181 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---S 257 (503)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---C
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhc---c
Confidence 99999999998 577899999999999999999999999999999999999976533 333344689999999994 5
Q ss_pred CCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHH
Q 007131 525 GGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALE 603 (617)
Q Consensus 525 ~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~ 603 (617)
.+.+++..++++|.+++..++. ...+.+.|+++.++.++.+++ ..++..|+.+|.+++...+. ....+.+.|+++
T Consensus 258 ~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~al~~l~nl~~~~~~---~~~~~~~~~~l~ 333 (503)
T d1wa5b_ 258 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDL---QTQVVINAGVLP 333 (503)
T ss_dssp CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH---HHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCc-hhhhhhHHHHHHHHHHHHHH---HHHhhhccchHH
Confidence 7889999999999999976654 577889999999999999875 89999999999999974332 455667899999
Q ss_pred HHHHHhcCCCCCC
Q 007131 604 ALVQLTRSPHEGV 616 (617)
Q Consensus 604 ~L~~ll~~~~~~v 616 (617)
.|..+++++++.+
T Consensus 334 ~l~~ll~~~~~~i 346 (503)
T d1wa5b_ 334 ALRLLLSSPKENI 346 (503)
T ss_dssp HHHHHTTCSCHHH
T ss_pred HHHHHhcCCCHHH
Confidence 9999999876544
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.3e-17 Score=156.89 Aligned_cols=186 Identities=21% Similarity=0.155 Sum_probs=161.6
Q ss_pred ccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcc-chhhHHHHH
Q 007131 389 QSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLD-LAKSWREGLQSEAAKAIANLSV-NAKVAKAVA 466 (617)
Q Consensus 389 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~ 466 (617)
.+.+.+.+..|+.+|.+|+...+.. ..+...|+++.++. ++.+++++++..|+.+|++++. ++..+..+.
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a--------~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~ 98 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNA--------ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL 98 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHH--------HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHH--------HHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999997543332 57889999999986 6778899999999999999998 566788899
Q ss_pred HhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc-C
Q 007131 467 EEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAA-D 543 (617)
Q Consensus 467 ~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~-~ 543 (617)
+.|+++.|+.++.+ .+++++..|+++|.+++.+. .++..+.+.|+++.|+.++. +.+..++..++++|++++. .
T Consensus 99 ~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~---~~~~~~~~~a~~~L~~l~~~~ 175 (264)
T d1xqra1 99 GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---QQVQKLKVKSAFLLQNLLVGH 175 (264)
T ss_dssp HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHC
T ss_pred HcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh---cCchHHHHHHHHHHHHHHhcc
Confidence 99999999999975 67889999999999999655 67888889999999999995 4788999999999999985 5
Q ss_pred CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 544 DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 544 ~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
++.+..+.+.|+++.|+.++.+++ +++++.|+++|.+|+...
T Consensus 176 ~~~~~~~~~~~~v~~L~~lL~~~~-~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 176 PEHKGTLCSMGMVQQLVALVRTEH-SPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp GGGHHHHHHTTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcC
Confidence 677889999999999999999875 899999999999998643
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=2.8e-16 Score=164.47 Aligned_cols=228 Identities=20% Similarity=0.166 Sum_probs=192.3
Q ss_pred HHhcCh-HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007131 376 WLKQGA-GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIAN 454 (617)
Q Consensus 376 ~~~~~i-~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 454 (617)
+.+.|+ +.++.++.+.+..++..++++|.+++....... ......++++.++.++.+.+++++..+++++.+
T Consensus 200 l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~-------~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~ 272 (503)
T d1wa5b_ 200 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP-------DWSVVSQALPTLAKLIYSMDTETLVDACWAISY 272 (503)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC-------CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccch-------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 345554 999999999999999999999999987654443 245567899999999999999999999999999
Q ss_pred hccc-hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHH
Q 007131 455 LSVN-AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLER 532 (617)
Q Consensus 455 ls~~-~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 532 (617)
++.. ++....+.+.|+++.++.++.+.++.+...|+.+|+|++... .....+.+.|+++.+..++. +.++.++..
T Consensus 273 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~i~~~ 349 (503)
T d1wa5b_ 273 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS---SPKENIKKE 349 (503)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHH
T ss_pred hccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhc---CCCHHHHHH
Confidence 9984 456678889999999999999999999999999999999766 45566778899999999994 578899999
Q ss_pred HHHHHHHhccCCC-chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 533 AAGALANLAADDK-CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 533 a~~~L~~l~~~~~-~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
++++++|++..++ ....+.+.|+++.++.++.+++ .+++..|+++|.|++..+.........+.+.|+++.|++++..
T Consensus 350 ~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~-~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~ 428 (503)
T d1wa5b_ 350 ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 428 (503)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred HHHHHHHHhhccHHHHHHHHHccccchhHHhcccCC-hhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcC
Confidence 9999999987654 4677789999999999999885 8999999999999998655433334456689999999999987
Q ss_pred CCC
Q 007131 612 PHE 614 (617)
Q Consensus 612 ~~~ 614 (617)
.+.
T Consensus 429 ~d~ 431 (503)
T d1wa5b_ 429 ADN 431 (503)
T ss_dssp CCH
T ss_pred CCH
Confidence 654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.70 E-value=1.6e-16 Score=162.75 Aligned_cols=228 Identities=19% Similarity=0.237 Sum_probs=190.6
Q ss_pred cChHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-
Q 007131 379 QGAGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV- 457 (617)
Q Consensus 379 ~~i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~- 457 (617)
..++.++.++.+++++++..++++|.+++...+.. ...+...|+++.+++++.+++++++..|+.++.+++.
T Consensus 188 ~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-------~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~ 260 (434)
T d1q1sc_ 188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER-------IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 260 (434)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-------HHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHhccccchhhhHHhhhcccchhhhhh-------HHHHhhcccchhcccccccchhhhhhchhhhhhhHHhh
Confidence 33488899999999999999999999997554333 2566789999999999999999999999999999998
Q ss_pred chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 458 NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 458 ~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
+++.+..+.+.|+++.++.++.+.++++++.|+++|.|++... +....+.+.|+++.++.++. +.+.+++..|+++
T Consensus 261 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~---~~~~~v~~~a~~~ 337 (434)
T d1q1sc_ 261 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KADFKTQKEAAWA 337 (434)
T ss_dssp CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---SSCHHHHHHHHHH
T ss_pred hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHh---ccChHHHHHHHHH
Confidence 4567888889999999999999999999999999999999754 66777888999999999995 4788999999999
Q ss_pred HHHhccCCC--chHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC---CCCCccccccccCcHHHHHHHhcC
Q 007131 537 LANLAADDK--CSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGD---SNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 537 L~~l~~~~~--~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
+.|++.... ....+.+.|+++.|+.++.+.+ +++...++++|.+|....+ ........+.+.|+++.|-.+..+
T Consensus 338 l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~ 416 (434)
T d1q1sc_ 338 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 416 (434)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcC
Confidence 999986543 4567889999999999998875 8999999999999875322 111233456688999999888888
Q ss_pred CCCCCC
Q 007131 612 PHEGVR 617 (617)
Q Consensus 612 ~~~~vr 617 (617)
++++||
T Consensus 417 ~n~~i~ 422 (434)
T d1q1sc_ 417 ENESVY 422 (434)
T ss_dssp SSHHHH
T ss_pred CCHHHH
Confidence 877653
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.5e-16 Score=159.48 Aligned_cols=219 Identities=22% Similarity=0.240 Sum_probs=173.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-ch
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSV-NA 459 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~ 459 (617)
+|.|+++|.++++++|..|+.+|.+|+..+++++ ..+.+.|++|.|+++|++++++++..|+++|.+|+. ++
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~-------~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 76 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAK-------QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHH-------HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHH-------HHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4999999999999999999999999987766653 789999999999999999999999999999999996 67
Q ss_pred hhHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcc-------------------------------------
Q 007131 460 KVAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEE------------------------------------- 501 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~------------------------------------- 501 (617)
+++..+.+.||++.++.++.. .+++++..|+++|++++..+.
T Consensus 77 ~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (457)
T d1xm9a1 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhccccc
Confidence 789999999999999998864 455566666666655543210
Q ss_pred -------------------h------------------------------------------------------------
Q 007131 502 -------------------H------------------------------------------------------------ 502 (617)
Q Consensus 502 -------------------~------------------------------------------------------------ 502 (617)
+
T Consensus 157 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 007131 503 -------------------------------------------------------------------------------- 502 (617)
Q Consensus 503 -------------------------------------------------------------------------------- 502 (617)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (457)
T d1xm9a1 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred -------HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcC-----Cchh
Q 007131 503 -------KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSC-----KFEG 570 (617)
Q Consensus 503 -------~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~-----~~~~ 570 (617)
+..+.+.|+++.|+.++ .+.++.++..+++++++|+.+++++..+.+ ++++.++.++... .+++
T Consensus 317 ~~~~~~~~~~~~~~~~l~~L~~~l---~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~ 392 (457)
T d1xm9a1 317 LMSSGMSQLIGLKEKGLPQIARLL---QSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHT---TCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHH
T ss_pred cchHHHHHHHHHHcCChHHHHhhh---cCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHH
Confidence 11122234555555555 346788999999999999999988888765 6789999988642 2357
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 571 VQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 571 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
++..|+++|.+|+...+ .....+.+.|+++.|+.++.+.+
T Consensus 393 v~~~a~~~L~~l~~~~~---~~~~~l~~~g~i~~L~~l~~~~~ 432 (457)
T d1xm9a1 393 ILSSACYTVRNLMASQP---QLAKQYFSSSMLNNIINLCRSSA 432 (457)
T ss_dssp HHHHHHHHHHHHHTTCT---HHHHHHCCHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCH---HHHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999997433 35677889999999999987753
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.7e-17 Score=154.69 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=152.7
Q ss_pred hcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHH-HHhcCCHHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHH
Q 007131 438 KSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAV-LARSMNRLVAEEAAGGLWNLSVG-EEHKGAIADAGGVKAL 515 (617)
Q Consensus 438 ~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~L 515 (617)
...+.+.+..|+.+|.+++.+.+++..+.+.||++.++. ++.+++++++..|+.+|++++.+ +..+..+.+.|+++.|
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 344678899999999999999999999999999999886 67789999999999999999975 5678889999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhccCC-CchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccc
Q 007131 516 VDLIFKWSSGGDGVLERAAGALANLAADD-KCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSA 594 (617)
Q Consensus 516 ~~ll~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 594 (617)
+.++.. +.++.++..|+++|++++.+. +++..+.+.|+++.|++++++++ .+++..|+++|++++...+. ...
T Consensus 107 v~lL~~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~---~~~ 180 (264)
T d1xqra1 107 LRLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPE---HKG 180 (264)
T ss_dssp HHHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGG---GHH
T ss_pred HHHhhc--CCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHhccHH---HHH
Confidence 999973 567889999999999999765 45778889999999999999885 89999999999999875443 567
Q ss_pred cccccCcHHHHHHHhcCCCCCCC
Q 007131 595 VGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 595 ~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.+.+.|+++.|+.++.++++++|
T Consensus 181 ~~~~~~~v~~L~~lL~~~~~~~~ 203 (264)
T d1xqra1 181 TLCSMGMVQQLVALVRTEHSPFH 203 (264)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHH
T ss_pred HHHHhhhHHHHHHHHcCCCHHHH
Confidence 77889999999999999888764
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.2e-15 Score=154.20 Aligned_cols=179 Identities=22% Similarity=0.215 Sum_probs=150.0
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhcc-chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CcchHHH
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSV-NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSV-GEEHKGA 505 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~-~~~~~~~ 505 (617)
+.||.||++|++++++++..|+++|.|++. ++++|..+.+.|||+.|+++|+++++++++.|+++|.||+. +++++..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 578999999999999999999999999997 67899999999999999999999999999999999999995 5688999
Q ss_pred HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHh--------------cCCchhH
Q 007131 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLAR--------------SCKFEGV 571 (617)
Q Consensus 506 i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~--------------~~~~~~~ 571 (617)
+.+.|+++.++.++. +..+..++..|+++|++++..+..+..+...|+.+.+..++. ...+..+
T Consensus 82 i~~~g~v~~li~~l~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 82 TRRQNGIREAVSLLR--RTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHT--TCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHCCChHHHHHHHh--ccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 999999999999996 467788999999999999998888777776554433333221 2234789
Q ss_pred HHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcC
Q 007131 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~ 611 (617)
+..++++|.+++.+.+. ......+.|+++.|++++++
T Consensus 160 ~~~a~~~l~~~~~~~~~---~~~~~~~~~~i~~l~~ll~~ 196 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAG---RQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHHHHHHHHTTSHHH---HHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchH---HHHHHHHhccHHHHHHHHhc
Confidence 99999999999875443 34455567889999998764
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.37 E-value=1.2e-11 Score=121.59 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=97.2
Q ss_pred hCCCceEEEecCCCCccH----HHH--hcCCCccEEeccCCCCCCHHHHHHHH------------hcCCCcceEEEcCCC
Q 007131 101 RCMNLQKLRFRGAESADS----IIH--LQARNLRELSGDYCRKITDATLSVIV------------ARHEALESLQLGPDF 162 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~----~~~--~~~~~L~~L~l~~~~~~~~~~l~~i~------------~~~~~L~~L~l~~~~ 162 (617)
.+++|++|+|++|..... +.. ..+++|++|++++|. +++.+...+. ...+.|+.|+++
T Consensus 91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~--- 166 (344)
T d2ca6a1 91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG--- 166 (344)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC---
T ss_pred hCCCcccccccccccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecc---
Confidence 455666666666544321 111 145666666666654 4443322221 234566666664
Q ss_pred CCCCCHHHHHHHH---hcCCCCCeeeccCccCCcHHHHHHH----HhcCCCCceEeecCCCCCCHHH-------HhcCcC
Q 007131 163 CERITSDAVKAIA---LCCPKLKKLRLSGIRDICGDAINAL----AKLCPNLTDIGFLDCLNVDEVA-------LGNVLS 228 (617)
Q Consensus 163 ~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~i~~~~l~~l----~~~~~~L~~L~l~~~~~~~~~~-------l~~~~~ 228 (617)
...+++.++..++ ..+++|++|++++| .++++++..+ ...+++|++|++++| .+++.+ +..+++
T Consensus 167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~ 244 (344)
T d2ca6a1 167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPN 244 (344)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTT
T ss_pred cccccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccc-ccccccccccccccccccc
Confidence 2245544443332 33566666666666 5665544322 234566666666666 455432 245566
Q ss_pred CCeecccCCCCCCHHHHHHHHh-----cCCCCCeEEeccCCCCHHHHHHHHh----cCCCCCEEEccCCCCCC
Q 007131 229 VRFLSVAGTSNMKWGVVSQVWH-----KLPKLVGLDVSRTDVGPITISRLLT----SSKSLKVLCALNCPVLE 292 (617)
Q Consensus 229 L~~L~l~~~~~i~~~~l~~l~~-----~~~~L~~L~l~~~~~~~~~l~~~~~----~~~~L~~L~l~~c~~~~ 292 (617)
|++|++++| .+++.++..++. ..+.|++|++++|.++..++..+.. .+++|++|++++|.+..
T Consensus 245 L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 245 LRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp CCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred chhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 666666665 466666555542 1245666666666666555443332 35666666666665443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.31 E-value=6.3e-11 Score=116.40 Aligned_cols=210 Identities=13% Similarity=0.128 Sum_probs=153.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHh---CCCceEEEecCCCCcc-------H---HHH--hcCCCccEEeccCCCCCCHHH--
Q 007131 80 WSSLDLRAHKCDIAMAASLASR---CMNLQKLRFRGAESAD-------S---IIH--LQARNLRELSGDYCRKITDAT-- 142 (617)
Q Consensus 80 w~~l~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~-------~---~~~--~~~~~L~~L~l~~~~~~~~~~-- 142 (617)
.+.+++++..+.++.+..+... .++|+.++++++.... . +.. ..+++|++|++++|. +++.+
T Consensus 33 l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 111 (344)
T d2ca6a1 33 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQE 111 (344)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHH
T ss_pred CCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-ccccccc
Confidence 3578888888888877776654 4679999998764321 0 111 167899999999886 55543
Q ss_pred -HHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHH------------hcCCCCCeeeccCccCCcHHHHHHH---HhcCCC
Q 007131 143 -LSVIVARHEALESLQLGPDFCERITSDAVKAIA------------LCCPKLKKLRLSGIRDICGDAINAL---AKLCPN 206 (617)
Q Consensus 143 -l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~------------~~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~ 206 (617)
+......+++|++|+++ +| .+++.+...++ ...+.|+.|.++++ .+++.++..+ ...++.
T Consensus 112 ~l~~~l~~~~~L~~L~l~--~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~ 187 (344)
T d2ca6a1 112 PLIDFLSKHTPLEHLYLH--NN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRL 187 (344)
T ss_dssp HHHHHHHHCTTCCEEECC--SS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTT
T ss_pred chhhhhcccccchheecc--cc-cccccccccccccccccccccccccCcccceeecccc-cccccccccccchhhhhhh
Confidence 55555678999999995 45 57766544432 34678999999987 6776555443 456789
Q ss_pred CceEeecCCCCCCHHHH--------hcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEeccCCCCHHHHHHHHh
Q 007131 207 LTDIGFLDCLNVDEVAL--------GNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDVSRTDVGPITISRLLT 275 (617)
Q Consensus 207 L~~L~l~~~~~~~~~~l--------~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~~~ 275 (617)
|++|++++| .++++++ ..+++|++|++++| .+++.+...+. ..+++|++|++++|.+++.++..+..
T Consensus 188 L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~ 265 (344)
T d2ca6a1 188 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 265 (344)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred hcccccccc-cccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence 999999998 6777542 46789999999987 68887766554 67899999999999999887766654
Q ss_pred c-----CCCCCEEEccCCCCCChhHHH
Q 007131 276 S-----SKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 276 ~-----~~~L~~L~l~~c~~~~~~~~~ 297 (617)
. .+.|++|++++|. +++.+..
T Consensus 266 ~l~~~~~~~L~~L~ls~N~-i~~~~~~ 291 (344)
T d2ca6a1 266 AFSKLENIGLQTLRLQYNE-IELDAVR 291 (344)
T ss_dssp HHHTCSSCCCCEEECCSSC-CBHHHHH
T ss_pred HhhhccCCCCCEEECCCCc-CChHHHH
Confidence 2 3679999999987 6666533
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.4e-10 Score=118.49 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=46.9
Q ss_pred cccCCCCCCCCHHHHHHH---HHhCCCceEEEecCCCCccHH---HHh----cCCCccEEeccCCCCCCHHHHHHH---H
Q 007131 81 SSLDLRAHKCDIAMAASL---ASRCMNLQKLRFRGAESADSI---IHL----QARNLRELSGDYCRKITDATLSVI---V 147 (617)
Q Consensus 81 ~~l~l~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~---~~~----~~~~L~~L~l~~~~~~~~~~l~~i---~ 147 (617)
+.+++.+..++++....+ .+.+++|++|+|+++...+.. +.. ...+|++|++++|. +++.++..+ .
T Consensus 30 ~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l 108 (460)
T d1z7xw1 30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTL 108 (460)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHT
T ss_pred CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchh
Confidence 456666666666544333 356677888888777654321 111 23467888887775 666554443 3
Q ss_pred hcCCCcceEEEc
Q 007131 148 ARHEALESLQLG 159 (617)
Q Consensus 148 ~~~~~L~~L~l~ 159 (617)
..+++|++|+++
T Consensus 109 ~~~~~L~~L~L~ 120 (460)
T d1z7xw1 109 RTLPTLQELHLS 120 (460)
T ss_dssp TSCTTCCEEECC
T ss_pred hccccccccccc
Confidence 456778888875
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.3e-12 Score=79.97 Aligned_cols=41 Identities=34% Similarity=0.899 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcc
Q 007131 40 WTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLW 80 (617)
Q Consensus 40 ~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w 80 (617)
|+.||+|++.+||+||+.+|++++++|||+|++++.++.+|
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW 41 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence 68899999999999999999999999999999999998887
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=5.5e-09 Score=106.39 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=86.2
Q ss_pred cCCCccEEeccCCCCCCHHHHH---HHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh----cCCCCCeeeccCccCCcHH
Q 007131 123 QARNLRELSGDYCRKITDATLS---VIVARHEALESLQLGPDFCERITSDAVKAIAL----CCPKLKKLRLSGIRDICGD 195 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~---~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~ 195 (617)
....++.|+++++. +...... .....++.++.++++ .+.+++.++..++. ..+.|+.+.++++ .+++.
T Consensus 253 ~~~~l~~l~l~~n~-i~~~~~~~~~~~l~~~~~l~~l~l~---~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~ 327 (460)
T d1z7xw1 253 PSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLA---GNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAA 327 (460)
T ss_dssp TTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECT---TCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGG
T ss_pred cccccccccccccc-ccccccccccccccccccccccccc---cccccccccchhhcccccccccccccccccc-chhhh
Confidence 34566666666654 4333322 223345666666664 23566655554432 2345666666666 45544
Q ss_pred HHHHH---HhcCCCCceEeecCCCCCCHHHH--------hcCcCCCeecccCCCCCCHHHHHHHH---hcCCCCCeEEec
Q 007131 196 AINAL---AKLCPNLTDIGFLDCLNVDEVAL--------GNVLSVRFLSVAGTSNMKWGVVSQVW---HKLPKLVGLDVS 261 (617)
Q Consensus 196 ~l~~l---~~~~~~L~~L~l~~~~~~~~~~l--------~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~ 261 (617)
++..+ ...+++|++|++++| .+++.++ ...+.|++|++++| .+++.++..+. ..+++|++|+++
T Consensus 328 ~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls 405 (460)
T d1z7xw1 328 CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLS 405 (460)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred hhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECC
Confidence 43332 244556666666666 4555432 12345666666666 56665554443 345666666666
Q ss_pred cCCCCHHHHHHHHhc----CCCCCEEEccCCCC
Q 007131 262 RTDVGPITISRLLTS----SKSLKVLCALNCPV 290 (617)
Q Consensus 262 ~~~~~~~~l~~~~~~----~~~L~~L~l~~c~~ 290 (617)
+|.+++.++..+... ...|+.|++.++..
T Consensus 406 ~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~ 438 (460)
T d1z7xw1 406 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438 (460)
T ss_dssp SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence 666666555544432 23566666666553
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.80 E-value=3.2e-09 Score=94.81 Aligned_cols=146 Identities=17% Similarity=0.094 Sum_probs=67.0
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
+++++|+++++....-.-...+++|++|+++++. +++. .. ...+++|+.|+++. + .+.. +.. ...+++|+
T Consensus 40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~l~~--n-~~~~--~~~-l~~l~~L~ 109 (199)
T d2omxa2 40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ-LTDI--TP-LKNLTKLVDILMNN--N-QIAD--ITP-LANLTNLT 109 (199)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCS--S-CCCC--CGG-GTTCTTCS
T ss_pred cCCCEEECCCCCCCCccccccCCCcCcCcccccc-ccCc--cc-ccCCcccccccccc--c-cccc--ccc-cccccccc
Confidence 4566666666543321101245666666666654 3331 11 33456666666642 2 1211 111 12355666
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
.|+++++....... ...+++|+.|++++|....-..+..+++|++|++++| .+++- .. ..++++|++|++++
T Consensus 110 ~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n-~l~~l--~~-l~~l~~L~~L~ls~ 181 (199)
T d2omxa2 110 GLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSN-QVTDL--KP-LANLTTLERLDISS 181 (199)
T ss_dssp EEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCC--GG-GTTCTTCCEEECCS
T ss_pred cccccccccccccc----cchhhhhHHhhhhhhhhcccccccccccccccccccc-cccCC--cc-ccCCCCCCEEECCC
Confidence 66666553222111 1234566666666553222234555566666666554 22221 11 23455556666555
Q ss_pred CCCC
Q 007131 263 TDVG 266 (617)
Q Consensus 263 ~~~~ 266 (617)
|.++
T Consensus 182 N~i~ 185 (199)
T d2omxa2 182 NKVS 185 (199)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5544
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.80 E-value=2.2e-09 Score=96.73 Aligned_cols=164 Identities=20% Similarity=0.167 Sum_probs=112.2
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
.++++|+++++..........+++|++|+++++. +++. .. ...+++|+.|+++ ++ .+++ +.. ...+++|+
T Consensus 46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~-i~~l--~~-~~~l~~L~~L~l~--~n-~i~~--l~~-l~~l~~L~ 115 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDI--KP-LANLKNLGWLFLD--EN-KVKD--LSS-LKDLKKLK 115 (210)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECC--SS-CCCC--GGG-GTTCTTCC
T ss_pred cCccEEECcCCCCCCchhHhhCCCCCEEeCCCcc-ccCc--cc-cccCccccccccc--cc-cccc--ccc-cccccccc
Confidence 4688888888765432222368899999998885 5542 22 2468899999995 34 5654 222 23478999
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
.|+++++. +.. +.. ...+++++.++++++.......+..+++|+++++++| .+++ +.. ..++++|++|++++
T Consensus 116 ~L~l~~~~-~~~--~~~-l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n-~l~~--i~~-l~~l~~L~~L~Ls~ 187 (210)
T d1h6ta2 116 SLSLEHNG-ISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISD--IVP-LAGLTKLQNLYLSK 187 (210)
T ss_dssp EEECTTSC-CCC--CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCC--CGG-GTTCTTCCEEECCS
T ss_pred cccccccc-ccc--ccc-ccccccccccccccccccccccccccccccccccccc-cccc--ccc-ccCCCCCCEEECCC
Confidence 99999874 332 222 2357899999998884333355678899999999987 4443 122 45789999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccC
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALN 287 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~ 287 (617)
|.+++ ++ .+.++++|++|++++
T Consensus 188 N~i~~--l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 188 NHISD--LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp SCCCB--CG-GGTTCTTCSEEEEEE
T ss_pred CCCCC--Ch-hhcCCCCCCEEEccC
Confidence 88764 23 256789999999874
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.78 E-value=7.1e-08 Score=82.86 Aligned_cols=116 Identities=10% Similarity=0.184 Sum_probs=63.5
Q ss_pred HHHHHhcCCCCCeeeccCccCCcHHHHHHHH---hcCCCCceEeecCCCCCCHHH-------HhcCcCCCeecccCCCCC
Q 007131 171 VKAIALCCPKLKKLRLSGIRDICGDAINALA---KLCPNLTDIGFLDCLNVDEVA-------LGNVLSVRFLSVAGTSNM 240 (617)
Q Consensus 171 l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~-------l~~~~~L~~L~l~~~~~i 240 (617)
++.+....|+|++|+|+++..++++++..++ ...+.|++|++++| .+++.+ +...+.|++|++++| .+
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i 84 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FL 84 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-hc
Confidence 4444444455555555544345554444333 22344555555555 344432 234466666666666 56
Q ss_pred CHHHHHHHHh---cCCCCCeEEeccC---CCCHHH---HHHHHhcCCCCCEEEccCC
Q 007131 241 KWGVVSQVWH---KLPKLVGLDVSRT---DVGPIT---ISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 241 ~~~~l~~l~~---~~~~L~~L~l~~~---~~~~~~---l~~~~~~~~~L~~L~l~~c 288 (617)
+++++..++. ..+.|++|+++++ .+++.+ +...+...+.|+.|+++++
T Consensus 85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 6666665543 3456777777664 344443 4555556777888877654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.73 E-value=1.5e-08 Score=92.46 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=35.1
Q ss_pred cCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+++|++|++.+|.......+.++++|++|++++| .+++ +.. ..++++|++|++++|.++.-. -+.++++|+.
T Consensus 149 ~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n-~l~~--l~~-l~~l~~L~~L~Ls~N~lt~i~---~l~~l~~L~~ 221 (227)
T d1h6ua2 149 GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KISD--ISP-LASLPNLIEVHLKNNQISDVS---PLANTSNLFI 221 (227)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCC--CGG-GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCE
T ss_pred cccccccccccccccccchhhcccccceecccCCC-ccCC--Chh-hcCCCCCCEEECcCCcCCCCc---ccccCCCCCE
Confidence 34555555555553222234455555555555554 2322 111 234555555555555443211 1334555555
Q ss_pred EEcc
Q 007131 283 LCAL 286 (617)
Q Consensus 283 L~l~ 286 (617)
|+++
T Consensus 222 L~ls 225 (227)
T d1h6ua2 222 VTLT 225 (227)
T ss_dssp EEEE
T ss_pred EEee
Confidence 5554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=98.72 E-value=8.1e-09 Score=94.30 Aligned_cols=168 Identities=18% Similarity=0.110 Sum_probs=119.8
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
.+|++|++.+|....-.....+++|++|+++++. +++. .. ...+++|+.+++.. + .+++ +..+ ..+++|+
T Consensus 41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~-i~~~--~~-l~~l~~l~~l~~~~--n-~~~~--i~~l-~~l~~L~ 110 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDL--AP-LKNLTKITELELSG--N-PLKN--VSAI-AGLQSIK 110 (227)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCC--GG-GTTCCSCCEEECCS--C-CCSC--CGGG-TTCTTCC
T ss_pred CCcCEEECCCCCCCcchhHhcCCCCcEeecCCce-eecc--cc-cccccccccccccc--c-cccc--cccc-ccccccc
Confidence 5789999998865432112379999999999986 4431 11 46789999999963 3 3432 2233 3589999
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
++.++++....... ....+.+..+.++++.......+..+++|++|++++|....... ..++++|+.|++++
T Consensus 111 ~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----l~~l~~L~~L~Ls~ 182 (227)
T d1h6ua2 111 TLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADD 182 (227)
T ss_dssp EEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCS
T ss_pred ccccccccccccch----hccccchhhhhchhhhhchhhhhccccccccccccccccccchh----hcccccceecccCC
Confidence 99999884332221 23568999999988854444667889999999999974332222 46799999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
|.+++- +. +.++++|++|++++|++.
T Consensus 183 n~l~~l--~~-l~~l~~L~~L~Ls~N~lt 208 (227)
T d1h6ua2 183 NKISDI--SP-LASLPNLIEVHLKNNQIS 208 (227)
T ss_dssp SCCCCC--GG-GGGCTTCCEEECTTSCCC
T ss_pred CccCCC--hh-hcCCCCCCEEECcCCcCC
Confidence 877642 22 567999999999999744
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=1.7e-09 Score=84.03 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhh-cCCCcccccCCCCCCCCH
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALG-ASPCLWSSLDLRAHKCDI 92 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~-~~~~~w~~l~l~~~~~~~ 92 (617)
.|.++.||+|++.+||+||+.+|++++++|||+|+.+. .++.+|+++.+.......
T Consensus 3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~~~~~ 59 (100)
T d1nexb1 3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSP 59 (100)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTTSSCH
T ss_pred CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCC
Confidence 36689999999999999999999999999999999985 578899988765543333
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.66 E-value=1.6e-07 Score=80.66 Aligned_cols=121 Identities=11% Similarity=0.155 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHHHHHHH---hcCCCCceEeecC
Q 007131 141 ATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDAINALA---KLCPNLTDIGFLD 214 (617)
Q Consensus 141 ~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~ 214 (617)
+.+..+....|+|++|+|+ ++..++++++..++. ..++|++|++++| .+++.+...++ ...+.|++|++++
T Consensus 5 ~~l~~l~~n~~~L~~L~L~--~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~ 81 (167)
T d1pgva_ 5 SCINRLREDDTDLKEVNIN--NMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 81 (167)
T ss_dssp HHHHHHHTTCSSCCEEECT--TCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHhCCCCCcEEEeC--CCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeeh
Confidence 4466777777888888884 355677777766543 3467888888877 67776654443 4467788888888
Q ss_pred CCCCCHHHH-------hcCcCCCeecccCCC--CCCHHHHHHHH---hcCCCCCeEEeccCCC
Q 007131 215 CLNVDEVAL-------GNVLSVRFLSVAGTS--NMKWGVVSQVW---HKLPKLVGLDVSRTDV 265 (617)
Q Consensus 215 ~~~~~~~~l-------~~~~~L~~L~l~~~~--~i~~~~l~~l~---~~~~~L~~L~l~~~~~ 265 (617)
| .+++.++ ...++|++|+++++. .+++++...++ ...+.|+.|+++.+..
T Consensus 82 n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 82 N-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp S-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred h-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 8 6777553 445778888887762 45666644444 5678899998887644
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.65 E-value=3e-07 Score=78.88 Aligned_cols=71 Identities=25% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh---cCCCCCeeeccCccCCcHHHHHHHH---hcCCCCceEeecCC
Q 007131 142 TLSVIVARHEALESLQLGPDFCERITSDAVKAIAL---CCPKLKKLRLSGIRDICGDAINALA---KLCPNLTDIGFLDC 215 (617)
Q Consensus 142 ~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~~ 215 (617)
.+..+....|.|++|+|+ ++..+++.++..++. .+++|++|++++| .++++++..++ ...+.++.+++.+|
T Consensus 8 ~l~~~~~~~~~L~~L~L~--~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 8 TLKRIQNNDPDLEEVNLN--NIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp HHHHHHTTCTTCCEEECT--TCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHhcCCCCcEEEcC--CCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc
Confidence 344455555666666663 244555555555443 3455666666655 55555544433 22344444444444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.62 E-value=4.9e-07 Score=77.48 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh---cCCCCceEeecCCCCCCHHHH-------hcCcCCCeecccCC
Q 007131 168 SDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK---LCPNLTDIGFLDCLNVDEVAL-------GNVLSVRFLSVAGT 237 (617)
Q Consensus 168 ~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~---~~~~L~~L~l~~~~~~~~~~l-------~~~~~L~~L~l~~~ 237 (617)
++.+..+....|+|++|+++++..+++.++..+++ .+++|++|++++| .+++.++ ...++|+.|++++|
T Consensus 6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc
Confidence 35567777888999999999876899999877774 6789999999999 7888643 56699999999987
Q ss_pred CCCCHHHHHHHH---hcCCCCCeEEec--cCCCCHHH---HHHHHhcCCCCCEEEccCCC
Q 007131 238 SNMKWGVVSQVW---HKLPKLVGLDVS--RTDVGPIT---ISRLLTSSKSLKVLCALNCP 289 (617)
Q Consensus 238 ~~i~~~~l~~l~---~~~~~L~~L~l~--~~~~~~~~---l~~~~~~~~~L~~L~l~~c~ 289 (617)
.++++++..+. ..+++|+.+++. ++.+++.+ +...+..+++|+.|++..+.
T Consensus 85 -~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 85 -FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp -CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 78888888777 467889876665 46788755 45556689999999998653
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.61 E-value=3e-08 Score=98.28 Aligned_cols=171 Identities=22% Similarity=0.174 Sum_probs=91.7
Q ss_pred HhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
..+++++.+.++++..........+++|++|+++++. +++.. ....+++|+.|+++. + .+++. .. ...++
T Consensus 194 ~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~--n-~l~~~--~~-~~~~~ 263 (384)
T d2omza2 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIG---TLASLTNLTDLDLAN--N-QISNL--AP-LSGLT 263 (384)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCS--S-CCCCC--GG-GTTCT
T ss_pred ccccccceeeccCCccCCCCcccccCCCCEEECCCCC-CCCcc---hhhcccccchhcccc--C-ccCCC--Cc-ccccc
Confidence 3456777777777655443333456777888877775 44321 234577777777752 3 33321 11 23367
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEE
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLD 259 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~ 259 (617)
+|++|+++++ .++. +.. ...++.++.+.+.+|.......+..++++++|++++| .+++- .. ...+|+|++|+
T Consensus 264 ~L~~L~l~~~-~l~~--~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l--~~-l~~l~~L~~L~ 335 (384)
T d2omza2 264 KLTELKLGAN-QISN--ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDI--SP-VSSLTKLQRLF 335 (384)
T ss_dssp TCSEEECCSS-CCCC--CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCC--GG-GGGCTTCCEEE
T ss_pred cCCEeeccCc-ccCC--CCc-cccccccccccccccccccccccchhcccCeEECCCC-CCCCC--cc-cccCCCCCEEE
Confidence 7777777765 3321 111 1234566666666653222234555666666666665 33321 11 34566666666
Q ss_pred eccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 260 VSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 260 l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
+++|.++. ++ .+.++++|++|++++|.+.
T Consensus 336 L~~n~l~~--l~-~l~~l~~L~~L~l~~N~l~ 364 (384)
T d2omza2 336 FANNKVSD--VS-SLANLTNINWLSAGHNQIS 364 (384)
T ss_dssp CCSSCCCC--CG-GGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCCC--Ch-hHcCCCCCCEEECCCCcCC
Confidence 66665543 11 1345666666666666533
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.60 E-value=4.3e-08 Score=88.04 Aligned_cols=145 Identities=21% Similarity=0.222 Sum_probs=106.1
Q ss_pred HHhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 99 ASRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 99 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+.+++|++|+++++..........+++|++|+++++. +++ +.. ...+++|+.|++.. + .+.+ +.. ...+
T Consensus 64 l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~-i~~--l~~-l~~l~~L~~L~l~~--~-~~~~--~~~-l~~l 133 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEH--N-GISD--ING-LVHL 133 (210)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCCEEECTT--S-CCCC--CGG-GGGC
T ss_pred HhhCCCCCEEeCCCccccCccccccCcccccccccccc-ccc--ccc-cccccccccccccc--c-cccc--ccc-cccc
Confidence 35789999999999976543323478999999999986 654 222 45689999999963 4 2322 222 2457
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
++|+.++++++ .+++.. ....+++|+++++++| .+++ ..+..+++|++|++++| .+++ +.. ..++++|++
T Consensus 134 ~~l~~l~~~~n-~l~~~~---~~~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls~N-~i~~--l~~-l~~l~~L~~ 204 (210)
T d1h6ta2 134 PQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISD--LRA-LAGLKNLDV 204 (210)
T ss_dssp TTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCB--CGG-GTTCTTCSE
T ss_pred ccccccccccc-cccccc---cccccccccccccccc-cccccccccCCCCCCEEECCCC-CCCC--Chh-hcCCCCCCE
Confidence 89999999988 555422 2346799999999999 4554 46788999999999998 5654 222 467899999
Q ss_pred EEecc
Q 007131 258 LDVSR 262 (617)
Q Consensus 258 L~l~~ 262 (617)
|++++
T Consensus 205 L~Ls~ 209 (210)
T d1h6ta2 205 LELFS 209 (210)
T ss_dssp EEEEE
T ss_pred EEccC
Confidence 99974
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.58 E-value=3.2e-08 Score=88.05 Aligned_cols=148 Identities=17% Similarity=0.115 Sum_probs=109.5
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
.++++++|+++++. +++ +.. .+.+++|++|+++ ++ .+++. .. ...+++|++|+++++...... . ..
T Consensus 38 ~l~~l~~L~l~~~~-i~~--l~~-l~~l~nL~~L~Ls--~N-~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~---~-l~ 103 (199)
T d2omxa2 38 DLDQVTTLQADRLG-IKS--IDG-VEYLNNLTQINFS--NN-QLTDI--TP-LKNLTKLVDILMNNNQIADIT---P-LA 103 (199)
T ss_dssp HHTTCCEEECTTSC-CCC--CTT-GGGCTTCCEEECC--SS-CCCCC--GG-GTTCTTCCEEECCSSCCCCCG---G-GT
T ss_pred HhcCCCEEECCCCC-CCC--ccc-cccCCCcCcCccc--cc-cccCc--cc-ccCCccccccccccccccccc---c-cc
Confidence 46799999999987 544 221 3569999999996 34 56542 22 345899999999988432222 2 34
Q ss_pred cCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 203 LCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
.+++|+.|++++|.......+..+++|++|++++|. ++.- .. ...+++|+.|++.+|.+++- + -+.++++|+.
T Consensus 104 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~-l~~~~~L~~L~l~~n~l~~l--~-~l~~l~~L~~ 176 (199)
T d2omxa2 104 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT-ISDI--SA-LSGLTSLQQLNFSSNQVTDL--K-PLANLTTLER 176 (199)
T ss_dssp TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSCCCCC--G-GGTTCTTCCE
T ss_pred cccccccccccccccccccccchhhhhHHhhhhhhh-hccc--cc-ccccccccccccccccccCC--c-cccCCCCCCE
Confidence 679999999999976666778899999999999984 4321 11 45789999999999877542 1 2567999999
Q ss_pred EEccCCCCC
Q 007131 283 LCALNCPVL 291 (617)
Q Consensus 283 L~l~~c~~~ 291 (617)
|++++|++.
T Consensus 177 L~ls~N~i~ 185 (199)
T d2omxa2 177 LDISSNKVS 185 (199)
T ss_dssp EECCSSCCC
T ss_pred EECCCCCCC
Confidence 999999743
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.2e-08 Score=79.72 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCccccc
Q 007131 37 VVDWTSLPDDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSL 83 (617)
Q Consensus 37 ~~~~~~LP~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l 83 (617)
.|.++.||+|++.+||+|||.+|++++++|||+|+.++.++.+|+.+
T Consensus 16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~ 62 (102)
T d2ovrb1 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK 62 (102)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 46799999999999999999999999999999999999999999654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.4e-08 Score=86.84 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=78.4
Q ss_pred cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH---HHHhc
Q 007131 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE---VALGN 225 (617)
Q Consensus 149 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---~~l~~ 225 (617)
++.+|++|+|++ + .++.- +.+...+++|++|+++++ .++. +.. ...+++|++|++++| .++. ..+..
T Consensus 16 n~~~lr~L~L~~--n-~I~~i--~~~~~~l~~L~~L~Ls~N-~i~~--l~~-~~~l~~L~~L~ls~N-~i~~l~~~~~~~ 85 (162)
T d1a9na_ 16 NAVRDRELDLRG--Y-KIPVI--ENLGATLDQFDAIDFSDN-EIRK--LDG-FPLLRRLKTLLVNNN-RICRIGEGLDQA 85 (162)
T ss_dssp CTTSCEEEECTT--S-CCCSC--CCGGGGTTCCSEEECCSS-CCCE--ECC-CCCCSSCCEEECCSS-CCCEECSCHHHH
T ss_pred CcCcCcEEECCC--C-CCCcc--CccccccccCCEEECCCC-CCCc--cCC-cccCcchhhhhcccc-cccCCCcccccc
Confidence 455788888853 3 44431 233455788888888887 5543 111 245688888888887 3443 23467
Q ss_pred CcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHH--HHHHHHhcCCCCCEEEcc
Q 007131 226 VLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPI--TISRLLTSSKSLKVLCAL 286 (617)
Q Consensus 226 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~l~~~~~~~~~L~~L~l~ 286 (617)
+++|++|++++|.-.+...+.. ...+|+|++|++++|.++.. .-..++..+|+|++||-.
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~-l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ccccccceeccccccccccccc-cccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence 8888888888873222222222 35678888888888765321 123456678888887743
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=98.38 E-value=4.2e-07 Score=89.73 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=118.0
Q ss_pred HhCCCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCC
Q 007131 100 SRCMNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCP 179 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~ 179 (617)
..+++|++|+++++..........+++|+.|+++++. +++. .. ...+++|++|++++ + .++. +.. ...++
T Consensus 216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~--~~-~~~~~~L~~L~l~~--~-~l~~--~~~-~~~~~ 285 (384)
T d2omza2 216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNL--AP-LSGLTKLTELKLGA--N-QISN--ISP-LAGLT 285 (384)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCS--S-CCCC--CGG-GTTCT
T ss_pred cccCCCCEEECCCCCCCCcchhhcccccchhccccCc-cCCC--Cc-ccccccCCEeeccC--c-ccCC--CCc-ccccc
Confidence 4467899999998876543233478899999999886 4431 11 34688999999963 2 3432 111 23478
Q ss_pred CCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 180 KLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 180 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
.++.+.+.++ .+++ +.. ...++++++|++++| .+++ ..+..+++|++|++++| .+++ +.. ..++++|++|
T Consensus 286 ~l~~l~~~~n-~l~~--~~~-~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n-~l~~--l~~-l~~l~~L~~L 356 (384)
T d2omza2 286 ALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANN-KVSD--VSS-LANLTNINWL 356 (384)
T ss_dssp TCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCC--CGG-GGGCTTCCEE
T ss_pred cccccccccc-cccc--ccc-cchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCC-CCCC--Chh-HcCCCCCCEE
Confidence 8899999887 4443 222 356789999999998 4554 45788999999999998 5553 222 4578999999
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCC
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNC 288 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c 288 (617)
++++|.+++-. . +.++++|+.|+++++
T Consensus 357 ~l~~N~l~~l~--~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 357 SAGHNQISDLT--P-LANLTRITQLGLNDQ 383 (384)
T ss_dssp ECCSSCCCBCG--G-GTTCTTCSEEECCCE
T ss_pred ECCCCcCCCCh--h-hccCCCCCEeeCCCC
Confidence 99998876432 2 567999999999875
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.7e-08 Score=94.63 Aligned_cols=177 Identities=17% Similarity=0.078 Sum_probs=119.7
Q ss_pred CCceEEEecCCCCccH--HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+|+++....- .....+++|++|+|+++. ++. +.. ...+++|+.|+|+ ++ .++.. ......+++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~--l~~-~~~l~~L~~L~Ls--~N-~l~~~--~~~~~~l~~ 101 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTK--LQV-DGTLPVLGTLDLS--HN-QLQSL--PLLGQTLPA 101 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCE--EEC-CSCCTTCCEEECC--SS-CCSSC--CCCTTTCTT
T ss_pred cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-ccc--ccc-ccccccccccccc--cc-ccccc--ccccccccc
Confidence 5799999999866532 122368899999999986 543 111 2468899999996 34 44321 223455789
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCC--CCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeE
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCL--NVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGL 258 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 258 (617)
|+.|+++++. +..-. ......++++++|++.+|. .+.+..+..+++|+.|++++| .++... ......+++|++|
T Consensus 102 L~~L~l~~~~-~~~~~-~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~-~~~~~~l~~L~~L 177 (266)
T d1p9ag_ 102 LTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTL 177 (266)
T ss_dssp CCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEE
T ss_pred cccccccccc-cceee-ccccccccccccccccccccceeccccccccccchhcccccc-cccccC-cccccccccccee
Confidence 9999999874 32111 1122456899999999873 233355677899999999997 443211 1224568999999
Q ss_pred EeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 259 DVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 259 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++++|.++. ++.-+..+++|+.|++++|+..=+.
T Consensus 178 ~Ls~N~L~~--lp~~~~~~~~L~~L~L~~Np~~CdC 211 (266)
T d1p9ag_ 178 LLQENSLYT--IPKGFFGSHLLPFAFLHGNPWLCNC 211 (266)
T ss_dssp ECCSSCCCC--CCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred ecccCCCcc--cChhHCCCCCCCEEEecCCCCCCCc
Confidence 999988762 3333345889999999999865443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2.5e-08 Score=85.24 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=75.1
Q ss_pred cCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHh
Q 007131 123 QARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAK 202 (617)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 202 (617)
.+..+++|+|+++. ++. +..+...+++|+.|+|++ + .++. +.. ...+++|++|++++| .++.-. ..+..
T Consensus 16 n~~~lr~L~L~~n~-I~~--i~~~~~~l~~L~~L~Ls~--N-~i~~--l~~-~~~l~~L~~L~ls~N-~i~~l~-~~~~~ 84 (162)
T d1a9na_ 16 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDFSD--N-EIRK--LDG-FPLLRRLKTLLVNNN-RICRIG-EGLDQ 84 (162)
T ss_dssp CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEECCS--S-CCCE--ECC-CCCCSSCCEEECCSS-CCCEEC-SCHHH
T ss_pred CcCcCcEEECCCCC-CCc--cCccccccccCCEEECCC--C-CCCc--cCC-cccCcchhhhhcccc-cccCCC-ccccc
Confidence 34577888888875 443 123345677888888852 3 4443 111 234678888888887 444211 11234
Q ss_pred cCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCCCHHHH-HHHHhcCCCCCeEEe
Q 007131 203 LCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNMKWGVV-SQVWHKLPKLVGLDV 260 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i~~~~l-~~l~~~~~~L~~L~l 260 (617)
.+|+|++|++++|. +++ ..+..+++|++|++++|.-...... ..+...+|+|+.||-
T Consensus 85 ~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 85 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred cccccccceecccc-ccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 56888888888873 432 2456778888888888732211111 234556788888763
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=8.9e-09 Score=97.61 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=117.3
Q ss_pred hCCCceEEEecCCCCccH--HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcC
Q 007131 101 RCMNLQKLRFRGAESADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCC 178 (617)
Q Consensus 101 ~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~ 178 (617)
.+++|++|+++++..... ........++++.......++... ......+++|++|+++. + .+.... ......+
T Consensus 54 ~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~l~~L~~L~l~~--n-~~~~~~-~~~~~~~ 128 (284)
T d1ozna_ 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDR--C-GLQELG-PGLFRGL 128 (284)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTT--S-CCCCCC-TTTTTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-chhhcccccCCEEecCC--c-cccccc-ccccchh
Confidence 456788888877654321 222245677777665544343211 11234678999999963 3 222111 1122346
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKL 255 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 255 (617)
++|+.++++++ .++.-. ......+++|++|++++| .++ +..+..+++|++|++++| .++... .....++++|
T Consensus 129 ~~L~~l~l~~N-~l~~i~-~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~-~~~f~~l~~L 203 (284)
T d1ozna_ 129 AALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RVAHVH-PHAFRDLGRL 203 (284)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTC
T ss_pred cccchhhhccc-cccccC-hhHhccccchhhcccccC-cccccchhhhccccccchhhhhhc-cccccC-hhHhhhhhhc
Confidence 78999999987 444211 122346789999999998 444 356788999999999987 343211 2234678999
Q ss_pred CeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhH
Q 007131 256 VGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEEN 295 (617)
Q Consensus 256 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~ 295 (617)
++|++++|.++... +..+..+++|++|++++++..-+..
T Consensus 204 ~~L~l~~N~i~~~~-~~~~~~~~~L~~L~l~~N~l~C~C~ 242 (284)
T d1ozna_ 204 MTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDCR 242 (284)
T ss_dssp CEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cccccccccccccc-ccccccccccCEEEecCCCCCCCcc
Confidence 99999998765433 4556789999999999998665544
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=4.9e-08 Score=78.29 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=43.8
Q ss_pred CCCCCCC----HHHHHHHHccCChHhHHHHhhhchhHHHhhcCCCcccccCCC
Q 007131 38 VDWTSLP----DDTVIQLMSCLNYRDRASLSSTCRTWRALGASPCLWSSLDLR 86 (617)
Q Consensus 38 ~~~~~LP----~e~l~~I~~~L~~~~~~~~~~vck~w~~~~~~~~~w~~l~l~ 86 (617)
|.++.|| ||++.+||+|||.+|++++++|||+|+.++.++.+|+.+...
T Consensus 9 D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~ 61 (118)
T d1p22a1 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61 (118)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred cHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 5577787 699999999999999999999999999999999999876543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.27 E-value=1.4e-08 Score=90.06 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=71.4
Q ss_pred cCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCc
Q 007131 149 RHEALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVL 227 (617)
Q Consensus 149 ~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~ 227 (617)
.+++|++|+|++ + .+++ +..+ ..+++|++|+++++ .++. +..+...+++|++|++++| .+++ .++..++
T Consensus 46 ~L~~L~~L~Ls~--n-~I~~--i~~l-~~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N-~i~~l~~~~~l~ 115 (198)
T d1m9la_ 46 TLKACKHLALST--N-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASLSGIEKLV 115 (198)
T ss_dssp HTTTCCEEECSE--E-EESC--CCCH-HHHTTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEE-ECCCHHHHHHHH
T ss_pred cccccceeECcc--c-CCCC--cccc-cCCccccChhhccc-cccc--ccccccccccccccccccc-cccccccccccc
Confidence 366777777742 2 3332 1112 23567777777766 3432 1112223456777887777 3443 5567777
Q ss_pred CCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCH---------HHHHHHHhcCCCCCEEE
Q 007131 228 SVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGP---------ITISRLLTSSKSLKVLC 284 (617)
Q Consensus 228 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---------~~l~~~~~~~~~L~~L~ 284 (617)
+|++|++++| .+++-.-......+++|+.|++++|.+.. .-...++..+|+|+.||
T Consensus 116 ~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 116 NLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 8888888776 44432212234567888888888764321 11234466788998886
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.09 E-value=4.8e-07 Score=73.07 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCH-HHHHHHHhcCCCC
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKW-GVVSQVWHKLPKL 255 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L 255 (617)
+++|++|+++++ .++. +..-...+++|++|++++|. +++ .++..+++|++|++++| .+++ ..+.. ...+++|
T Consensus 19 l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N-~i~~~~~~~~-l~~~~~L 92 (124)
T d1dcea3 19 LLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRL 92 (124)
T ss_dssp GTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTC
T ss_pred CCCCCEEECCCC-ccCc--chhhhhhhhccccccccccc-ccccCccccccccCeEECCCC-ccCCCCCchh-hcCCCCC
Confidence 455555555554 3321 11112234555555555552 222 34455555555555554 2221 11111 2345555
Q ss_pred CeEEeccCC
Q 007131 256 VGLDVSRTD 264 (617)
Q Consensus 256 ~~L~l~~~~ 264 (617)
++|++++|.
T Consensus 93 ~~L~l~~N~ 101 (124)
T d1dcea3 93 VLLNLQGNS 101 (124)
T ss_dssp CEEECTTSG
T ss_pred CEEECCCCc
Confidence 555555543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.08 E-value=4.3e-07 Score=73.33 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=38.0
Q ss_pred cCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCC
Q 007131 203 LCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSL 280 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 280 (617)
.+++|++|++++| .++. .++..+++|+.|++++| .++.- .. ...+++|++|++++|.++.-.-...+..+++|
T Consensus 18 ~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l--~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L 92 (124)
T d1dcea3 18 QLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENV--DG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 92 (124)
T ss_dssp GGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC--GG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-ccccc--Cc-cccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence 3455555555555 2322 23455555555555554 22211 11 23455555555555544321111123345555
Q ss_pred CEEEccCCCC
Q 007131 281 KVLCALNCPV 290 (617)
Q Consensus 281 ~~L~l~~c~~ 290 (617)
++|+++++++
T Consensus 93 ~~L~l~~N~i 102 (124)
T d1dcea3 93 VLLNLQGNSL 102 (124)
T ss_dssp CEEECTTSGG
T ss_pred CEEECCCCcC
Confidence 5555555553
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.1e-07 Score=89.97 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=120.6
Q ss_pred CCceEEEecCCCCccHH--HHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADSI--IHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+|+++.+..-. ....+++|++|+++++. +.... ......++.++.+.+. ....++...... ...+++
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~-~~~~~~~~~~~~l~~~--~~~~~~~l~~~~-~~~l~~ 106 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARID-AAAFTGLALLEQLDLS--DNAQLRSVDPAT-FHGLGR 106 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECC--SCTTCCCCCTTT-TTTCTT
T ss_pred CCCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccc-cccccccccccccccc--cccccccccchh-hccccc
Confidence 46899999998664321 12367899999998876 33211 1223456788888774 233343221111 245789
Q ss_pred CCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 181 LKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 181 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
|++|+++++. +..-. ......+++|+.+++.++ .++ +..+..+++|++|++++| .++.-. .....++++|+.
T Consensus 107 L~~L~l~~n~-~~~~~-~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~-~~~f~~l~~L~~ 181 (284)
T d1ozna_ 107 LHTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVP-ERAFRGLHSLDR 181 (284)
T ss_dssp CCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCE
T ss_pred CCEEecCCcc-ccccc-ccccchhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccc-hhhhccccccch
Confidence 9999999873 32111 123345789999999998 343 355788899999999997 443211 123457899999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChh
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEE 294 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~ 294 (617)
++++++.++... +..+.++++|++|++++|.+.+..
T Consensus 182 l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~ 217 (284)
T d1ozna_ 182 LLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALP 217 (284)
T ss_dssp EECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred hhhhhccccccC-hhHhhhhhhccccccccccccccc
Confidence 999998776432 455678999999999999876554
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=5.9e-05 Score=69.74 Aligned_cols=131 Identities=14% Similarity=0.038 Sum_probs=92.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
.+.|+++|.++++.++..|+.+|..+. ...+++.|+++++++++.++..|+.+|..+.....
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~------------------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~ 82 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRG------------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 82 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhC------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 378899999999999999999998652 12357999999999999999999999999876544
Q ss_pred hHHHHHHhCCHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILA-VLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~-~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
....+ ++.+. .++++.++.++..|+.+|+++........ ...++.+...+ .+....++..++.++..
T Consensus 83 ~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~---~d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 83 CEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITA---FDKSTNVRRATAFAISV 150 (276)
T ss_dssp THHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHT---TCSCHHHHHHHHHHHHT
T ss_pred cccch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHh---cCcchHHHHHHHHHHhh
Confidence 33332 22333 34677899999999999998875332111 12344455555 34666777777777665
Q ss_pred hc
Q 007131 540 LA 541 (617)
Q Consensus 540 l~ 541 (617)
..
T Consensus 151 ~~ 152 (276)
T d1oyza_ 151 IN 152 (276)
T ss_dssp C-
T ss_pred cc
Confidence 43
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.00 E-value=8.1e-08 Score=85.01 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH----HHHhcCcCCCeecccCCCCC-------C-HHHHH
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE----VALGNVLSVRFLSVAGTSNM-------K-WGVVS 246 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~----~~l~~~~~L~~L~l~~~~~i-------~-~~~l~ 246 (617)
++|++|+++++ .++. +..+. .+++|++|++++| .+++ ..+..+++|++|++++|+-. . ...-.
T Consensus 93 ~~L~~L~l~~N-~i~~--l~~~~-~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~ 167 (198)
T d1m9la_ 93 DTLEELWISYN-QIAS--LSGIE-KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHCCEEECSEE-ECCC--HHHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHH
T ss_pred ccccccccccc-cccc--ccccc-ccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHH
Confidence 45666666655 4432 22222 3456666666665 3332 23455666666666665210 0 11112
Q ss_pred HHHhcCCCCCeEEec
Q 007131 247 QVWHKLPKLVGLDVS 261 (617)
Q Consensus 247 ~l~~~~~~L~~L~l~ 261 (617)
.+...+|+|+.||-.
T Consensus 168 ~vi~~lp~L~~LD~~ 182 (198)
T d1m9la_ 168 EVVKRLPNLKKLDGM 182 (198)
T ss_dssp HHHHHCSSCCEESSG
T ss_pred HHHHHCCCcCEeCCc
Confidence 334668888887633
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=1.8e-07 Score=87.28 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=113.8
Q ss_pred ceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCee
Q 007131 105 LQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLKKL 184 (617)
Q Consensus 105 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L 184 (617)
+..++.++.... .++..-.+++++|+|+++. ++.... .....+++|++|+|+ ++ .++. +... ..+++|++|
T Consensus 12 ~~~v~C~~~~L~-~iP~~lp~~l~~L~Ls~N~-i~~l~~-~~f~~l~~L~~L~L~--~N-~l~~--l~~~-~~l~~L~~L 82 (266)
T d1p9ag_ 12 HLEVNCDKRNLT-ALPPDLPKDTTILHLSENL-LYTFSL-ATLMPYTRLTQLNLD--RA-ELTK--LQVD-GTLPVLGTL 82 (266)
T ss_dssp CCEEECTTSCCS-SCCSCCCTTCCEEECTTSC-CSEEEG-GGGTTCTTCCEEECT--TS-CCCE--EECC-SCCTTCCEE
T ss_pred CeEEEccCCCCC-eeCcCcCcCCCEEECcCCc-CCCcCH-HHhhccccccccccc--cc-cccc--cccc-ccccccccc
Confidence 344555444322 1222223689999999986 543111 223568999999996 34 5653 2222 357999999
Q ss_pred eccCccCCcHHHHHHHHhcCCCCceEeecCCCCC--CHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 185 RLSGIRDICGDAINALAKLCPNLTDIGFLDCLNV--DEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 185 ~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+++++ .++. .......+++|+.|+++++... ....+..+.++++|.++++. ++.-. ......+++|+.|++++
T Consensus 83 ~Ls~N-~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~-~~~~~~l~~l~~l~l~~ 157 (266)
T d1p9ag_ 83 DLSHN-QLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLEKLSLAN 157 (266)
T ss_dssp ECCSS-CCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTT
T ss_pred ccccc-cccc--cccccccccccccccccccccceeeccccccccccccccccccc-cceec-cccccccccchhccccc
Confidence 99998 5543 1223456799999999987432 23456788999999999873 32111 22345688999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 263 TDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 263 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
|.++... ...+..+++|++|++++|.+..
T Consensus 158 N~l~~~~-~~~~~~l~~L~~L~Ls~N~L~~ 186 (266)
T d1p9ag_ 158 NNLTELP-AGLLNGLENLDTLLLQENSLYT 186 (266)
T ss_dssp SCCSCCC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred ccccccC-ccccccccccceeecccCCCcc
Confidence 8775432 3345679999999999997543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3.9e-05 Score=79.84 Aligned_cols=207 Identities=17% Similarity=0.034 Sum_probs=139.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--h
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--A 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~ 459 (617)
+.+..++..++..+|..|+.++..++..-+. .-.+.-.+|.+.++..+.....|..|+..+..++.. +
T Consensus 90 ~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~----------~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~ 159 (588)
T d1b3ua_ 90 PPLESLATVEETVVRDKAVESLRAISHEHSP----------SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS 159 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH----------HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH
Confidence 6666777788899999999999988643221 223444556556666666677888888888887663 3
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
..+..+ ++.+.+++.+.++.+++.|+.++..++..-... ......++.+..++ .+++..++..|+.++..
T Consensus 160 ~~~~~l-----~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~---~d~~~~vr~~a~~~l~~ 229 (588)
T d1b3ua_ 160 AVKAEL-----RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLA---SDEQDSVRLLAVEACVN 229 (588)
T ss_dssp HHHHHH-----HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHH---TCSCHHHHTTHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHh---cCCchhhHHHHHHHHHH
Confidence 333333 567888898999999999999999998643221 22234556677766 45788899999999998
Q ss_pred hccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCCC
Q 007131 540 LAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 540 l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
++..-+.. -.....++.+..++.+. +..++..++.+|.+++..-.. .......++.+..++.+++.+||
T Consensus 230 i~~~~~~~--~~~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~ll~d~~~~vr 298 (588)
T d1b3ua_ 230 IAQLLPQE--DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGP------EITKTDLVPAFQNLMKDCEAEVR 298 (588)
T ss_dssp HHHHSCHH--HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCH------HHHHHTHHHHHHHHHTCSSHHHH
T ss_pred hhccCCHH--HHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhh------hhhhhhhhHHHHHHHhccchHHH
Confidence 87432221 12223567777777666 478999999999988752221 11223567777777777665543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=3.7e-05 Score=80.09 Aligned_cols=209 Identities=15% Similarity=0.114 Sum_probs=145.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--h
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--A 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~ 459 (617)
+.+.+++...++.+|..|+.++..++..-. ........++.+..++.+.++.+|..|+.++..++.. +
T Consensus 167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----------~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~ 236 (588)
T d1b3ua_ 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLE----------LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----------HHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhc----------HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH
Confidence 677777888899999999999999875432 1344556778888889999999999999999988763 2
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALAN 539 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~ 539 (617)
+... ...++.+..++.+.+..++..++.+|.+++..-. ..+.....++.+..++. +.+.+++..|+.++..
T Consensus 237 ~~~~----~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~---d~~~~vr~~a~~~l~~ 307 (588)
T d1b3ua_ 237 EDLE----ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMK---DCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHHH----HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHh---ccchHHHHHHHHHHHH
Confidence 2222 2247888888988999999999999999874321 12233456788888884 5788999999999999
Q ss_pred hccC--CCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCCC
Q 007131 540 LAAD--DKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEGV 616 (617)
Q Consensus 540 l~~~--~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~v 616 (617)
++.. ...+....-...++.+...+.+.+ ..++..++.++..++..-.. .. .....++.+..++++++++|
T Consensus 308 ~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~~-----~~-~~~~l~p~l~~~l~d~~~~v 379 (588)
T d1b3ua_ 308 FCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILGK-----DN-TIEHLLPLFLAQLKDECPEV 379 (588)
T ss_dssp HHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHCH-----HH-HHHHTHHHHHHHHTCSCHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccch-----hH-HHHHHHHHHHHHHHhhhhhh
Confidence 8853 233333333456777777777764 78888888777766531110 00 11234566666666655443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.80 E-value=8.8e-07 Score=77.92 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCC--CCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCC
Q 007131 179 PKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLN--VDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLV 256 (617)
Q Consensus 179 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 256 (617)
+++++|+|+++ .++...-......+++|++|++++|.. +....+..+++|++|++++| .++.-. ...+.++++|+
T Consensus 29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~-~~~F~~l~~L~ 105 (192)
T d1w8aa_ 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEIS-NKMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEEC-SSSSTTCTTCC
T ss_pred CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccC-HHHHhCCCccc
Confidence 47888888877 443211112234568888888888742 22355677888888888887 443211 12245788999
Q ss_pred eEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCChhHHH
Q 007131 257 GLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEEENNI 297 (617)
Q Consensus 257 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~~~~~ 297 (617)
+|++++|.++.-. +..+.++++|++|++++++...+....
T Consensus 106 ~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~~~~~~~~ 145 (192)
T d1w8aa_ 106 TLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp EEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred ccccCCccccccC-HHHhcCCcccccccccccccccccchH
Confidence 9999998765322 234567899999999999877665433
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=2.7e-06 Score=80.82 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=62.0
Q ss_pred hcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCC--HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCC
Q 007131 176 LCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVD--EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLP 253 (617)
Q Consensus 176 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 253 (617)
..+++|+.++++++ .++. +. ...+++|++|++++|.... ...+..++.+++|++++| .++... .....+++
T Consensus 147 ~~l~~L~~l~l~~n-~l~~--l~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~-~~~~~~l~ 219 (305)
T d1xkua_ 147 QGMKKLSYIRIADT-NITT--IP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVD-NGSLANTP 219 (305)
T ss_dssp GGCTTCCEEECCSS-CCCS--CC--SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEEC-TTTGGGST
T ss_pred ccccccCccccccC-Cccc--cC--cccCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccc-cccccccc
Confidence 34567777777766 3322 10 1135677777777763221 244566777777777776 333211 12235677
Q ss_pred CCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCC
Q 007131 254 KLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPV 290 (617)
Q Consensus 254 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 290 (617)
+|+.|++++|.++. ++..+..+++|++|++++|.+
T Consensus 220 ~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~i 254 (305)
T d1xkua_ 220 HLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNI 254 (305)
T ss_dssp TCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCC
T ss_pred cceeeecccccccc--cccccccccCCCEEECCCCcc
Confidence 78888888776542 223345677888888887753
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00029 Score=64.83 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=93.2
Q ss_pred hhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHH
Q 007131 426 KDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGA 505 (617)
Q Consensus 426 ~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~ 505 (617)
+....+.|+++|+++++.+|..|+.+|..+.. ..+++.|+++++++++.++..|+.+|..+.........
T Consensus 17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~ 86 (276)
T d1oyza_ 17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 86 (276)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence 45677899999999999999999999987642 22478999999999999999999999999765433332
Q ss_pred HHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 007131 506 IADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANL 582 (617)
Q Consensus 506 i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l 582 (617)
+ ++.+...+. .+.++.++..|+.+|++++........ ..++.+...+.+.+ ..++..|+.++..+
T Consensus 87 ~-----~~~l~~~~l--~d~~~~vr~~a~~aL~~~~~~~~~~~~----~~~~~l~~~~~d~~-~~vr~~a~~~l~~~ 151 (276)
T d1oyza_ 87 V-----FNILNNMAL--NDKSACVRATAIESTAQRCKKNPIYSP----KIVEQSQITAFDKS-TNVRRATAFAISVI 151 (276)
T ss_dssp H-----HHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHTTCSC-HHHHHHHHHHHHTC
T ss_pred h-----HHHHHHHHh--cCCChhHHHHHHHHHHHHccccchhhH----HHHHHHHHHhcCcc-hHHHHHHHHHHhhc
Confidence 2 334444443 357889999999999998753322111 12334444444442 56666666555543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.58 E-value=8.6e-06 Score=77.27 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCe
Q 007131 178 CPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVG 257 (617)
Q Consensus 178 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~ 257 (617)
...+..+....+..............+++|+.+++.+| .++.-....+++|++|+++++.... .. .....++++++.
T Consensus 123 ~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~~L~~L~l~~n~~~~-~~-~~~~~~~~~l~~ 199 (305)
T d1xkua_ 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITK-VD-AASLKGLNNLAK 199 (305)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCE-EC-TGGGTTCTTCCE
T ss_pred cccccccccccccccccCCCccccccccccCccccccC-CccccCcccCCccCEEECCCCcCCC-CC-hhHhhccccccc
Confidence 44555555554422111111122345678888888877 3433222346788888888863321 11 223466788999
Q ss_pred EEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCCh
Q 007131 258 LDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLEE 293 (617)
Q Consensus 258 L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~~ 293 (617)
|+++++.++... ...+.++++|++|++++|.+.+.
T Consensus 200 L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N~L~~l 234 (305)
T d1xkua_ 200 LGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKV 234 (305)
T ss_dssp EECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCSSC
T ss_pred cccccccccccc-cccccccccceeeeccccccccc
Confidence 999988765432 23456789999999999975543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.55 E-value=7.3e-05 Score=58.47 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=70.9
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 381 AGLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 381 i~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
++.|++.+.++++.++..|+.+|.++. ..++++.|+++|+++++.+|..|+.+|..+..
T Consensus 24 ~~~L~~~l~d~~~~vR~~a~~~L~~~~------------------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--- 82 (111)
T d1te4a_ 24 FEPLLESLSNEDWRIRGAAAWIIGNFQ------------------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--- 82 (111)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC------------------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcc------------------hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc---
Confidence 377889999999999999999998642 12356899999999999999999999987632
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLW 494 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~ 494 (617)
.+.++.|..++.++++.++..|+.+|.
T Consensus 83 -------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 -------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp -------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234778888999999999999998874
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=97.48 E-value=8.6e-07 Score=84.82 Aligned_cols=63 Identities=17% Similarity=0.020 Sum_probs=38.9
Q ss_pred cCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCC
Q 007131 225 NVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVL 291 (617)
Q Consensus 225 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~ 291 (617)
.+++|+.|+++++..... +. -...+++|+.|++++|.++.. ++..+.++++|++|++++|.+.
T Consensus 219 ~~~~l~~l~~~~~~l~~~--~~-~~~~~~~L~~L~Ls~N~l~g~-iP~~l~~L~~L~~L~Ls~N~l~ 281 (313)
T d1ogqa_ 219 SDKNTQKIHLAKNSLAFD--LG-KVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp TTSCCSEEECCSSEECCB--GG-GCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEE
T ss_pred cccccccccccccccccc--cc-ccccccccccccCccCeeccc-CChHHhCCCCCCEEECcCCccc
Confidence 345666666666532111 11 124567888888888876542 3445567888888888888644
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.46 E-value=8.1e-05 Score=58.20 Aligned_cols=88 Identities=20% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHH
Q 007131 428 GGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIA 507 (617)
Q Consensus 428 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 507 (617)
.+++.|++.|.++++.+|..|+.+|.++.. .+.++.|.++|+++++.++..|+.+|..+..
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------- 82 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------- 82 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------
Confidence 357889999999999999999999987542 2247889999999999999999999988743
Q ss_pred hcCChHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 007131 508 DAGGVKALVDLIFKWSSGGDGVLERAAGALA 538 (617)
Q Consensus 508 ~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~ 538 (617)
.+.++.|..++. ++++.++..|+.+|.
T Consensus 83 -~~~~~~L~~ll~---d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 -ERVRAAMEKLAE---TGTGFARKVAVNYLE 109 (111)
T ss_dssp -HHHHHHHHHHTT---SCCTHHHHHHHHHGG
T ss_pred -cchHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 245777888884 577889999888763
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.36 E-value=0.0042 Score=59.98 Aligned_cols=170 Identities=9% Similarity=0.024 Sum_probs=120.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHH---HHHH-HHhcCCHHHHHHHHHHHHHhcc
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIR---LLLD-LAKSWREGLQSEAAKAIANLSV 457 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~---~Lv~-lL~~~~~~~~~~a~~~L~~ls~ 457 (617)
+.+...+..++.-....+...+..++.....+. ... +.++ .+.. +....+.+.+..|+..+..+..
T Consensus 125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~--------~~~--e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr 194 (477)
T d1ho8a_ 125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNV--------KLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV 194 (477)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCH--------HHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhcccccc--------chH--HHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc
Confidence 566667777776677777777777765544432 111 1122 2222 2345678888899999999999
Q ss_pred chhhHHHHHHhC--CHHHHHHHHhc--C---------------CHHHHHHHHHHHHHhcCCcchHHHHHhc--CChHHHH
Q 007131 458 NAKVAKAVAEEG--GINILAVLARS--M---------------NRLVAEEAAGGLWNLSVGEEHKGAIADA--GGVKALV 516 (617)
Q Consensus 458 ~~~~~~~i~~~~--~i~~L~~lL~~--~---------------~~~~~~~a~~~L~nL~~~~~~~~~i~~~--g~i~~L~ 516 (617)
.++.|..+...+ .++.+++.|+. . ...++.+++-++|-|+++++....+.+. +.++.++
T Consensus 195 ~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~ 274 (477)
T d1ho8a_ 195 IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLL 274 (477)
T ss_dssp SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHH
T ss_pred CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHH
Confidence 999999987543 37788887764 1 1367889999999999999888888875 4588899
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhccCCCc------hHHHHHhCCHHHHHHHHh
Q 007131 517 DLIFKWSSGGDGVLERAAGALANLAADDKC------SMEVALAGGVHALVMLAR 564 (617)
Q Consensus 517 ~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~------~~~i~~~~~~~~L~~ll~ 564 (617)
++++. +..+++.+-++.++.|+...... ...++..++++. +..|.
T Consensus 275 ~i~~~--s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~ 325 (477)
T d1ho8a_ 275 KLVKI--TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLS 325 (477)
T ss_dssp HHHHH--CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHH
T ss_pred HHHHh--hhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHh
Confidence 99974 77899999999999999865332 344556566555 44443
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.32 E-value=0.0022 Score=61.90 Aligned_cols=226 Identities=13% Similarity=0.004 Sum_probs=143.3
Q ss_pred cChHHHHHhhcc-CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhC--CHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 007131 379 QGAGLLLSLMQS-TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDG--GIRLLLDLAKSWREGLQSEAAKAIANL 455 (617)
Q Consensus 379 ~~i~~l~~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~Lv~lL~~~~~~~~~~a~~~L~~l 455 (617)
+++..++.++.. ..+++.+..+..+..|...++.. +.....+.+.. .-+.+..++...+.-....++.++..+
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~----~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll 149 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYG----DDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLL 149 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSS----HHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcch----hHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHH
Confidence 345788888854 66788788877777665443221 11111222211 113344444444556677777788888
Q ss_pred ccchhh----HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhc--C----
Q 007131 456 SVNAKV----AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKW--S---- 523 (617)
Q Consensus 456 s~~~~~----~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~--~---- 523 (617)
+..... .+.+.+ ....+-.+....+.+....|+.+|..+...++.|..+.. ...++++++.|... .
T Consensus 150 ~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~ 227 (477)
T d1ho8a_ 150 VQNGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 227 (477)
T ss_dssp TSTTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred HhccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccc
Confidence 774322 222222 123333334557778888899999999999999999864 55678888887641 0
Q ss_pred --------CCCHHHHHHHHHHHHHhccCCCchHHHHHhC--CHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCC--C
Q 007131 524 --------SGGDGVLERAAGALANLAADDKCSMEVALAG--GVHALVMLARSCKFEGVQEQAARALANLAAHGDSNS--N 591 (617)
Q Consensus 524 --------~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~--~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~--~ 591 (617)
....++++.++-|+|-|+.+++....+.+.. .++.++++++...-+++...+.++|.|+........ .
T Consensus 228 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~ 307 (477)
T d1ho8a_ 228 RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV 307 (477)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred hhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 1134789999999999999888888887754 388899998876669999999999999986433221 0
Q ss_pred ccccccccCcHHHHHHHhcC
Q 007131 592 NSAVGQEAGALEALVQLTRS 611 (617)
Q Consensus 592 ~~~~~~~~g~~~~L~~ll~~ 611 (617)
....++..++++ ++..|+.
T Consensus 308 ~~~~~v~~~~l~-~l~~L~~ 326 (477)
T d1ho8a_ 308 IKQLLLLGNALP-TVQSLSE 326 (477)
T ss_dssp HHHHHHHHCHHH-HHHHHHS
T ss_pred HHHHHHHcchhH-HHHHHhc
Confidence 123344455554 4444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.00026 Score=59.46 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=50.5
Q ss_pred HHHHHhcCCCCceEeecCCCCCCH-----HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCC-----
Q 007131 197 INALAKLCPNLTDIGFLDCLNVDE-----VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVG----- 266 (617)
Q Consensus 197 l~~l~~~~~~L~~L~l~~~~~~~~-----~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~----- 266 (617)
+..+...+|+|++|++++| .+++ ..+..+++|++|++++|.--+...+..+ ...+|+.|++++|.+.
T Consensus 57 l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~Npl~~~~~~ 133 (162)
T d1koha1 57 LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNSLSDTFRD 133 (162)
T ss_dssp HHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTSTTSSSSSS
T ss_pred hHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCCCcCcCccc
Confidence 3444456777777777777 3443 2245677777777777632222333332 2446777777776553
Q ss_pred -HHHHHHHHhcCCCCCEEE
Q 007131 267 -PITISRLLTSSKSLKVLC 284 (617)
Q Consensus 267 -~~~l~~~~~~~~~L~~L~ 284 (617)
......++..+|+|+.||
T Consensus 134 ~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 134 QSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHHTTSTTCCEET
T ss_pred chhHHHHHHHHCCCCCEEC
Confidence 234456677788888776
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=97.10 E-value=1.3e-06 Score=83.45 Aligned_cols=85 Identities=16% Similarity=0.035 Sum_probs=55.9
Q ss_pred CCCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCE
Q 007131 204 CPNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKV 282 (617)
Q Consensus 204 ~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 282 (617)
+++|+.+++.++..... ..+..+++|++|++++| .++.. +..-..++++|++|++++|.++.. ++. +.++++|+.
T Consensus 220 ~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N-~l~g~-iP~~l~~L~~L~~L~Ls~N~l~g~-iP~-~~~L~~L~~ 295 (313)
T d1ogqa_ 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGT-LPQGLTQLKFLHSLNVSFNNLCGE-IPQ-GGNLQRFDV 295 (313)
T ss_dssp TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEEC-CCGGGGGCTTCCEEECCSSEEEEE-CCC-STTGGGSCG
T ss_pred cccccccccccccccccccccccccccccccCccC-eeccc-CChHHhCCCCCCEEECcCCccccc-CCC-cccCCCCCH
Confidence 45666666666632211 34567899999999998 34321 122345789999999999876532 232 245778888
Q ss_pred EEccCCCCCC
Q 007131 283 LCALNCPVLE 292 (617)
Q Consensus 283 L~l~~c~~~~ 292 (617)
+++++|+.+.
T Consensus 296 l~l~~N~~l~ 305 (313)
T d1ogqa_ 296 SAYANNKCLC 305 (313)
T ss_dssp GGTCSSSEEE
T ss_pred HHhCCCcccc
Confidence 9999887543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00025 Score=59.58 Aligned_cols=84 Identities=24% Similarity=0.302 Sum_probs=46.9
Q ss_pred HHhcCCCCCeeeccCccCCcH-HHHHHHHhcCCCCceEeecCCCCCCH-HH--HhcCcCCCeecccCCCCCC-----HHH
Q 007131 174 IALCCPKLKKLRLSGIRDICG-DAINALAKLCPNLTDIGFLDCLNVDE-VA--LGNVLSVRFLSVAGTSNMK-----WGV 244 (617)
Q Consensus 174 l~~~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~~--l~~~~~L~~L~l~~~~~i~-----~~~ 244 (617)
+...+++|++|+|+++ .+++ ..+......+|+|+.|++++| .+++ .. .....+|+.|++++|+-.. ...
T Consensus 60 ~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y 137 (162)
T d1koha1 60 IEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137 (162)
T ss_dssp HHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred HHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence 3445667777777766 4432 122333445677777777776 3433 22 2233467777777763221 233
Q ss_pred HHHHHhcCCCCCeEE
Q 007131 245 VSQVWHKLPKLVGLD 259 (617)
Q Consensus 245 l~~l~~~~~~L~~L~ 259 (617)
...+...+|+|+.||
T Consensus 138 ~~~i~~~~P~L~~LD 152 (162)
T d1koha1 138 ISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHTTSTTCCEET
T ss_pred HHHHHHHCCCCCEEC
Confidence 455667788888775
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.99 E-value=2.5e-05 Score=68.22 Aligned_cols=12 Identities=17% Similarity=-0.092 Sum_probs=6.3
Q ss_pred CCccEEeccCCC
Q 007131 125 RNLRELSGDYCR 136 (617)
Q Consensus 125 ~~L~~L~l~~~~ 136 (617)
+++++|+|+++.
T Consensus 29 ~~l~~L~Ls~N~ 40 (192)
T d1w8aa_ 29 LHTTELLLNDNE 40 (192)
T ss_dssp TTCSEEECCSCC
T ss_pred CCCCEEEeCCCC
Confidence 355555555543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=1.9e-06 Score=78.86 Aligned_cols=83 Identities=12% Similarity=0.019 Sum_probs=41.1
Q ss_pred CCceEEEecCCCCccH--HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCC
Q 007131 103 MNLQKLRFRGAESADS--IIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPK 180 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~ 180 (617)
+++++|+++++....- .....+++|++|+++++...... -......+++++++.+. .+..+...... ....+++
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~--~~n~l~~~~~~-~~~~l~~ 104 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIE--KANNLLYINPE-AFQNLPN 104 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEE--CCTTCCEECTT-SEECCTT
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhcccccccee-ecccccccccccccccc--ccccccccccc-ccccccc
Confidence 3577777776654321 11124667777777766522110 01112346667777664 23334321111 1234677
Q ss_pred CCeeeccCc
Q 007131 181 LKKLRLSGI 189 (617)
Q Consensus 181 L~~L~l~~~ 189 (617)
|++|+++++
T Consensus 105 L~~l~l~~~ 113 (242)
T d1xwdc1 105 LQYLLISNT 113 (242)
T ss_dssp CCEEEEESC
T ss_pred ccccccchh
Confidence 777777766
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.005 Score=69.23 Aligned_cols=190 Identities=17% Similarity=0.123 Sum_probs=119.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
..+++-+.+.|++.|.-|+.-|.+.-... ....++... ...++.|+++|.+.++++|..|+.+|..++..-..
T Consensus 6 ~~ll~k~~~~D~d~R~ma~~dl~~~l~~~--~~~~~~~~~-----~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~ 78 (1207)
T d1u6gc_ 6 SNLLEKMTSSDKDFRFMATNDLMTELQKD--SIKLDDDSE-----RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 78 (1207)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSS--CCSCCTTHH-----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHhhc--ccccChHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH
Confidence 56677788999999999988777643222 222222222 23568899999999999999999999998774221
Q ss_pred HHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCC----c---chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHH
Q 007131 462 AKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVG----E---EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAA 534 (617)
Q Consensus 462 ~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~----~---~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~ 534 (617)
. .+ ...++.|+..+.+.+...+..+..+|..+... . .....+. ...++.+...+. ...+..++..|+
T Consensus 79 ~-~~--~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~--~~~~~~v~~~al 152 (1207)
T d1u6gc_ 79 Y-QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIA--KQEDVSVQLEAL 152 (1207)
T ss_dssp H-HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHS--CCSCHHHHHHHH
T ss_pred h-hH--HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 1 11 11356677777777888888888777766321 1 1111111 123333444443 345678899999
Q ss_pred HHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccC
Q 007131 535 GALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHG 586 (617)
Q Consensus 535 ~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~ 586 (617)
.++..+...-+. -... ....++.++..+.++. ..++..|+.+|..++...
T Consensus 153 ~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~~ 203 (1207)
T d1u6gc_ 153 DIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSC 203 (1207)
T ss_dssp HHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHC
Confidence 999988642221 0000 1123455666666664 789999999999998643
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=7.2e-06 Score=74.83 Aligned_cols=160 Identities=16% Similarity=0.077 Sum_probs=72.4
Q ss_pred HhCCCceEEEecCCCCccHHHH---hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHh
Q 007131 100 SRCMNLQKLRFRGAESADSIIH---LQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIAL 176 (617)
Q Consensus 100 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~ 176 (617)
..+++|++|+++++.....+.. ..++++++|.+..+..+.... ......+++|+.|++.. + .+..........
T Consensus 50 ~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~~L~~l~l~~--~-~l~~~~~~~~~~ 125 (242)
T d1xwdc1 50 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISN--T-GIKHLPDVHKIH 125 (242)
T ss_dssp TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TTSEECCTTCCEEEEES--C-CCCSCCCCTTTC
T ss_pred hccchhhhhhhccccccceeeccccccccccccccccccccccccc-cccccccccccccccch--h-hhcccccccccc
Confidence 4467788888877755432211 246777777776654433211 12234577888888852 2 333211111111
Q ss_pred cCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCH--HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCC
Q 007131 177 CCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDE--VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPK 254 (617)
Q Consensus 177 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 254 (617)
..+.+..+...+. .+..-....+......++.|++.++ .++. ......++++++....+..++.-. .....++++
T Consensus 126 ~l~~l~~~~~~n~-~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~-~~~f~~l~~ 202 (242)
T d1xwdc1 126 SLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELP-NDVFHGASG 202 (242)
T ss_dssp BSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCC-TTTTTTSCC
T ss_pred ccccccccccccc-ccccccccccccccccceeeecccc-cccccccccccchhhhcccccccccccccc-HHHhcCCCC
Confidence 1223333333322 2221101111112246667777665 3433 112233444444433332333110 112345677
Q ss_pred CCeEEeccCCCC
Q 007131 255 LVGLDVSRTDVG 266 (617)
Q Consensus 255 L~~L~l~~~~~~ 266 (617)
|+.|++++|.++
T Consensus 203 L~~L~Ls~N~l~ 214 (242)
T d1xwdc1 203 PVILDISRTRIH 214 (242)
T ss_dssp CSEEECTTSCCC
T ss_pred CCEEECCCCcCC
Confidence 777777776554
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0053 Score=60.35 Aligned_cols=221 Identities=13% Similarity=0.019 Sum_probs=131.6
Q ss_pred HHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQS--TQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~ 459 (617)
+.++..+.+ .+.+++..|+.++..+......... .........+.+...+.+++++++..++.++..++...
T Consensus 174 ~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~ 247 (458)
T d1ibrb_ 174 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD------KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 247 (458)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT------SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhh------hHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 666666654 4578899999999887543322110 12223335566777778889999999999999987622
Q ss_pred h--hHHHHHHhCC-HHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchH---------------------HHHHhcCChHHH
Q 007131 460 K--VAKAVAEEGG-INILAVLARSMNRLVAEEAAGGLWNLSVGEEHK---------------------GAIADAGGVKAL 515 (617)
Q Consensus 460 ~--~~~~i~~~~~-i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~---------------------~~i~~~g~i~~L 515 (617)
. ....+ ... .+.+...+.+.+++++..|+..+..++...... ....-...++.+
T Consensus 248 ~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 325 (458)
T d1ibrb_ 248 YQYMETYM--GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 325 (458)
T ss_dssp GGGCTTTT--TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 1 11111 112 234556667788889988888888775322100 000001122333
Q ss_pred HHHHhh----cCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCC
Q 007131 516 VDLIFK----WSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSN 591 (617)
Q Consensus 516 ~~ll~~----~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 591 (617)
...+.. ..+....++..|..++..++...+.. +.. ..++.+.+.+.+++ ..+++.|+.+|..++....+..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~-~l~~~i~~~l~s~~-~~~r~aal~~l~~i~~~~~~~~- 400 (458)
T d1ibrb_ 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IVP-HVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQ- 400 (458)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HHH-HHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTT-
T ss_pred HhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh--hhh-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCHhH-
Confidence 333321 01223357888888888887533221 111 23455666777664 8999999999999986332211
Q ss_pred ccccccccCcHHHHHHHhcCCCCCCC
Q 007131 592 NSAVGQEAGALEALVQLTRSPHEGVR 617 (617)
Q Consensus 592 ~~~~~~~~g~~~~L~~ll~~~~~~vr 617 (617)
.... -...++.|+..++++++.||
T Consensus 401 ~~~~--l~~i~~~l~~~l~d~~~~VR 424 (458)
T d1ibrb_ 401 LKPL--VIQAMPTLIELMKDPSVVVR 424 (458)
T ss_dssp TCTT--TTTHHHHHHHGGGCSCHHHH
T ss_pred HHHH--HHHHHHHHHHHhCCCCHHHH
Confidence 1111 24689999999999887765
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.00042 Score=57.63 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=56.5
Q ss_pred cCCCCceEeecCCCCCC---HHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCC
Q 007131 203 LCPNLTDIGFLDCLNVD---EVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKS 279 (617)
Q Consensus 203 ~~~~L~~L~l~~~~~~~---~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 279 (617)
..++|++|++.++..++ ...+.++++|+.|++++| .++.-. ...+..+++|++|++++|.++.-. ..++. ..+
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~-~~~ 104 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNALESLS-WKTVQ-GLS 104 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSCCSCCC-STTTC-SCC
T ss_pred CccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcc-cccccccccccceeccCCCCcccC-hhhhc-ccc
Confidence 34677888887654444 355777888888888876 443211 123456788888888887764211 12223 347
Q ss_pred CCEEEccCCCCCChhH
Q 007131 280 LKVLCALNCPVLEEEN 295 (617)
Q Consensus 280 L~~L~l~~c~~~~~~~ 295 (617)
|+.|++++++..=+..
T Consensus 105 l~~L~L~~Np~~C~C~ 120 (156)
T d2ifga3 105 LQELVLSGNPLHCSCA 120 (156)
T ss_dssp CCEEECCSSCCCCCGG
T ss_pred ccccccCCCcccCCch
Confidence 8999999998754444
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.012 Score=57.61 Aligned_cols=189 Identities=13% Similarity=0.039 Sum_probs=115.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...+..++++++..++.+|..++........ ........+.+.....+.+++++..|+..+..++.....
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~ 291 (458)
T d1ibrb_ 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291 (458)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-------TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888999999999999998754433210 111222234455566777899999999988888653221
Q ss_pred HHHHH---------------------HhCCHHHHHHHHhc-------CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 462 AKAVA---------------------EEGGINILAVLARS-------MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 462 ~~~i~---------------------~~~~i~~L~~lL~~-------~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
..... ....++.+...+.. .+..++..|..++..++...... +.. ..++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~-~l~~ 368 (458)
T d1ibrb_ 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IVP-HVLP 368 (458)
T ss_dssp HHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HHH-HHHH
T ss_pred HHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh--hhh-HHHH
Confidence 11000 01112333333322 11246777888887776422110 111 1334
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-h-HHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 514 ALVDLIFKWSSGGDGVLERAAGALANLAADDKC-S-MEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 514 ~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-~-~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.+...+ .+++..+++.|+.+|+.++..... . ...+ ...++.++.++.+++ +.||..|+++|..++..
T Consensus 369 ~i~~~l---~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~-~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 369 FIKEHI---KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHH
Confidence 444555 457788999999999999864321 1 1111 246788888888874 89999999999999863
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0041 Score=67.54 Aligned_cols=146 Identities=16% Similarity=-0.008 Sum_probs=94.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--h
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--A 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~ 459 (617)
+.+.+.+.+++...|+.|+.++..++....+... . .-...++.++..+.+.++.+|..|+++|..++.. +
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~-------~-~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 469 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-------P-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 469 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHT-------T-THHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHS
T ss_pred HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhc-------c-cchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhh
Confidence 5666677788899999999999988644322110 0 1123567888888889999999999999998762 1
Q ss_pred hhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHH
Q 007131 460 KVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGAL 537 (617)
Q Consensus 460 ~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L 537 (617)
...... -...++.++..+.+.++.+++.|+.+|.+++... .....+ ...++.++..+. ....+....+..++
T Consensus 470 ~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~---~~~~~~~~~~~~al 543 (888)
T d1qbkb_ 470 QPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFS---KYQHKNLLILYDAI 543 (888)
T ss_dssp SCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTT---TCCHHHHHHHHHHH
T ss_pred hhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHh---hhhHHHHHHHHHHH
Confidence 112221 1335788888898999999999999999997422 111100 123445555553 23445555555555
Q ss_pred HHhc
Q 007131 538 ANLA 541 (617)
Q Consensus 538 ~~l~ 541 (617)
..++
T Consensus 544 ~~l~ 547 (888)
T d1qbkb_ 544 GTLA 547 (888)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0038 Score=70.25 Aligned_cols=214 Identities=14% Similarity=0.058 Sum_probs=129.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccch--
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNA-- 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~-- 459 (617)
+.+++.+...++++|..|+.+|..++..-.+. . -...++.|+..+.+.+...+..+..+|..+...-
T Consensus 48 ~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~---------~--~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~ 116 (1207)
T d1u6gc_ 48 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---------Q--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 116 (1207)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---------H--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh---------h--HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccc
Confidence 88888888899999999999999886443221 1 1234567777777778888888888877664311
Q ss_pred h-----hHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 460 K-----VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWNLSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 460 ~-----~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
. ....+ ....++.+...+.. .+..++..|+.+|..+......-..-.....++.++..+ .+....++..|
T Consensus 117 ~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l---~~~~~~vR~~A 192 (1207)
T d1u6gc_ 117 ASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQL---TSPRLAVRKRT 192 (1207)
T ss_dssp ----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGG---GCSSHHHHHHH
T ss_pred ccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 0 01111 11123444444443 567888899999888864221000000011334444555 35678899999
Q ss_pred HHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCC
Q 007131 534 AGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPH 613 (617)
Q Consensus 534 ~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~ 613 (617)
+.+|..++..-... .-...++.+++.+..+.....+..++.++..++...... ... .-...++.+.+.++.++
T Consensus 193 ~~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~-~l~~i~~~l~~~l~~~~ 265 (1207)
T d1u6gc_ 193 IIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR---IGE-YLEKIIPLVVKFCNVDD 265 (1207)
T ss_dssp HHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG---GTT-SCTTHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh---hHH-HHHHHHHHHHHHhcCcc
Confidence 99999998543221 112345667766654444566777788888887633221 111 12467888999998888
Q ss_pred CCCC
Q 007131 614 EGVR 617 (617)
Q Consensus 614 ~~vr 617 (617)
+++|
T Consensus 266 ~~~r 269 (1207)
T d1u6gc_ 266 DELR 269 (1207)
T ss_dssp TTTH
T ss_pred HHHH
Confidence 7765
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0078 Score=65.29 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=102.9
Q ss_pred HhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccc--hhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc--
Q 007131 425 MKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVN--AKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLSVGE-- 500 (617)
Q Consensus 425 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~-- 500 (617)
.....++.+...+++.+++++..|..++..++.. ......+ ...++.+...|.....+++..|+++++.++..-
T Consensus 662 ~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~ 739 (888)
T d1qbkb_ 662 ARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 739 (888)
T ss_dssp HTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG
T ss_pred hHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888999999999999988762 2111111 112455666666677889999999999987432
Q ss_pred chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCchHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHH
Q 007131 501 EHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKCSMEVALAGGVHALVMLARSCKFEGVQEQAARALA 580 (617)
Q Consensus 501 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~ 580 (617)
+.+.-+ ...++.|+.++.. +.....+.++++.+++-|+...+..-.-.-...++.++..+....+.+-++.|...++
T Consensus 740 ~~~py~--~~il~~L~~il~~-~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~ 816 (888)
T d1qbkb_ 740 EMQPYI--PMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGIC 816 (888)
T ss_dssp GGGGGS--HHHHHHHHHHHTC-TTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHH
T ss_pred HhhhhH--HHHHHHHHHHHcC-CCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 211111 2467788888875 4556679999999999998644321110112356777777765444566777888888
Q ss_pred HHhcc
Q 007131 581 NLAAH 585 (617)
Q Consensus 581 ~l~~~ 585 (617)
.+...
T Consensus 817 ~~i~~ 821 (888)
T d1qbkb_ 817 TMISV 821 (888)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=95.68 E-value=0.0012 Score=62.94 Aligned_cols=137 Identities=13% Similarity=0.141 Sum_probs=73.7
Q ss_pred CCceEEEecCCCCccHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 007131 103 MNLQKLRFRGAESADSIIHLQARNLRELSGDYCRKITDATLSVIVARHEALESLQLGPDFCERITSDAVKAIALCCPKLK 182 (617)
Q Consensus 103 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~ 182 (617)
.+++.|+|+++.... + +...++|++|+++++. ++. +.....+|+.|++.. + .++. +....++|+
T Consensus 38 ~~l~~LdLs~~~L~~-l-p~~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~l~~--n-~l~~-----l~~lp~~L~ 101 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS-L-PELPPHLESLVASCNS-LTE-----LPELPQSLKSLLVDN--N-NLKA-----LSDLPPLLE 101 (353)
T ss_dssp HTCSEEECTTSCCSC-C-CSCCTTCSEEECCSSC-CSS-----CCCCCTTCCEEECCS--S-CCSC-----CCSCCTTCC
T ss_pred cCCCEEEeCCCCCCC-C-CCCCCCCCEEECCCCC-Ccc-----cccchhhhhhhhhhh--c-ccch-----hhhhccccc
Confidence 468899998875432 1 1245788888887654 442 112345788888853 2 2221 111224678
Q ss_pred eeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEecc
Q 007131 183 KLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSR 262 (617)
Q Consensus 183 ~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 262 (617)
+|+++++ .+.. +.. ...+++|++|++.++. ++.. ......+..+.+..+...... ....++.++.+.+.+
T Consensus 102 ~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~~~-~~~~-~~~~~~l~~l~~~~~~~~~~~----~l~~l~~l~~L~l~~ 171 (353)
T d1jl5a_ 102 YLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNS-LKKL-PDLPPSLEFIAAGNNQLEELP----ELQNLPFLTAIYADN 171 (353)
T ss_dssp EEECCSS-CCSS--CCC-CTTCTTCCEEECCSSC-CSCC-CCCCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCS
T ss_pred ccccccc-cccc--ccc-hhhhccceeecccccc-cccc-ccccccccchhhccccccccc----cccccccceeccccc
Confidence 8888876 3432 111 2346778888877763 2211 122345556665554322111 123466777777777
Q ss_pred CCC
Q 007131 263 TDV 265 (617)
Q Consensus 263 ~~~ 265 (617)
+..
T Consensus 172 n~~ 174 (353)
T d1jl5a_ 172 NSL 174 (353)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.002 Score=53.40 Aligned_cols=86 Identities=9% Similarity=0.032 Sum_probs=59.9
Q ss_pred CCCceEeecCCCCCCH-HHHhcCcCCCeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEE
Q 007131 205 PNLTDIGFLDCLNVDE-VALGNVLSVRFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVL 283 (617)
Q Consensus 205 ~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 283 (617)
...+.++..+....+. ..+..+++|++|.++++..++.-.. ..+.++++|+.|++++|.++.-. +..+.++++|++|
T Consensus 8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L 85 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRL 85 (156)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEE
T ss_pred CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCc-hhhccccccCcceeeccccCCcc-cccccccccccce
Confidence 3456677766533322 4567789999999987655653221 12457899999999998875432 3456789999999
Q ss_pred EccCCCCCC
Q 007131 284 CALNCPVLE 292 (617)
Q Consensus 284 ~l~~c~~~~ 292 (617)
+|++|.+.+
T Consensus 86 ~Ls~N~l~~ 94 (156)
T d2ifga3 86 NLSFNALES 94 (156)
T ss_dssp ECCSSCCSC
T ss_pred eccCCCCcc
Confidence 999998654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.027 Score=60.10 Aligned_cols=210 Identities=16% Similarity=0.031 Sum_probs=121.7
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcC--CHHHHHHHHHHHHHhccch
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSW--REGLQSEAAKAIANLSVNA 459 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~ls~~~ 459 (617)
+.|...+.++++++|..|-..|..+...+ ..+.+..+...+.+. +..+|..|+-.|.|.....
T Consensus 8 ~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~---------------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~ 72 (861)
T d2bpta1 8 QLLENSILSPDQNIRLTSETQLKKLSNDN---------------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHC---------------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcC---------------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcc
Confidence 34444556788999999988888653211 134567888888664 5678888888888876522
Q ss_pred hh--HHH----HH-H------hCCHHHHHHHHhcCCHHHHHHHHHHHHHhcCCcchHHHHHh---cCChHHHHHHHhhcC
Q 007131 460 KV--AKA----VA-E------EGGINILAVLARSMNRLVAEEAAGGLWNLSVGEEHKGAIAD---AGGVKALVDLIFKWS 523 (617)
Q Consensus 460 ~~--~~~----i~-~------~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~---~g~i~~L~~ll~~~~ 523 (617)
.. ... .. . ......+++.+.++++.++..++.++..++... +.+ ...++.|+..+. .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~-----~p~~~wpeli~~L~~~~~--s 145 (861)
T d2bpta1 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE-----LPHGAWPELMKIMVDNTG--A 145 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-----GGGTCCHHHHHHHHHHTS--T
T ss_pred cchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHhc--C
Confidence 11 100 00 0 011245777888889999999999999886432 111 124555666664 3
Q ss_pred CCCHHHHHHHHHHHHHhccCCCch-HHHHH--hCCHHHHHHHHh-cCCchhHHHHHHHHHHHHhccCCCCCCcccccccc
Q 007131 524 SGGDGVLERAAGALANLAADDKCS-MEVAL--AGGVHALVMLAR-SCKFEGVQEQAARALANLAAHGDSNSNNSAVGQEA 599 (617)
Q Consensus 524 ~~~~~~~~~a~~~L~~l~~~~~~~-~~i~~--~~~~~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 599 (617)
+....++..|+.+|..++..-+.. ..+.. ...+..++..+. ...+..++..|..++.++...-...... .....
T Consensus 146 ~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~--~~~~~ 223 (861)
T d2bpta1 146 EQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER--EGERN 223 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS--HHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHh--hhhhh
Confidence 445677888999999998543221 11111 012233333333 2334789999999999887533221101 11112
Q ss_pred CcHHHHHHHhcCCCCC
Q 007131 600 GALEALVQLTRSPHEG 615 (617)
Q Consensus 600 g~~~~L~~ll~~~~~~ 615 (617)
..++.|...+++++++
T Consensus 224 ~~~~~l~~~~~~~~~~ 239 (861)
T d2bpta1 224 YLMQVVCEATQAEDIE 239 (861)
T ss_dssp HHHHHHHHHHTCSCHH
T ss_pred HHHHhHHHHhcCCCHH
Confidence 3456666666665543
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=94.18 E-value=0.011 Score=51.99 Aligned_cols=163 Identities=14% Similarity=0.014 Sum_probs=73.2
Q ss_pred HhhccCCHHHHHHHHHH-----HhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh
Q 007131 386 SLMQSTQEDVQERAATG-----LATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 386 ~~l~~~~~~~~~~a~~~-----L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~ 460 (617)
..|.+++.+++..|+.. |..|....+ +.-|...+..-+.+.|..++.+++..++..++..+
T Consensus 49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d------~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l-------- 114 (233)
T d1lrva_ 49 QYLADPFWERRAIAVRYSPVEALTPLIRDSD------EVVRRAVAYRLPREQLSALMFDEDREVRITVADRL-------- 114 (233)
T ss_dssp GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSS------HHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS--------
T ss_pred HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCC------HHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhcc--------
Confidence 45566777777666431 222222211 12222333322234444455555555554444322
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHH-----HHHhcCCc--chHHHHHhcCChHHHHHHHhhcCCCCHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGG-----LWNLSVGE--EHKGAIADAGGVKALVDLIFKWSSGGDGVLERA 533 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~-----L~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a 533 (617)
..+.|..++.+++..|+..++.. |..+..++ +.|..+...-+.+.|..++ .+.++.++..+
T Consensus 115 ---------~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~---~D~d~~VR~~a 182 (233)
T d1lrva_ 115 ---------PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMT---QDPEPEVRRIV 182 (233)
T ss_dssp ---------CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGST---TCSSHHHHHHH
T ss_pred ---------CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHc---cCCCHHHHHHH
Confidence 23445555555555555555432 22223222 2333333333445555555 34667777776
Q ss_pred HHHH-----HHhccCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHHH
Q 007131 534 AGAL-----ANLAADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQAA 576 (617)
Q Consensus 534 ~~~L-----~~l~~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~ 576 (617)
+..+ ..+..+++. |..+.+... +.++..|.++ ++.|++.|.
T Consensus 183 a~~L~~~~L~~l~~D~d~~VR~aaae~~~-~~ll~~L~D~-d~~VR~aA~ 230 (233)
T d1lrva_ 183 ASRLRGDDLLELLHDPDWTVRLAAVEHAS-LEALRELDEP-DPEVRLAIA 230 (233)
T ss_dssp HHHCCGGGGGGGGGCSSHHHHHHHHHHSC-HHHHHHCCCC-CHHHHHHHH
T ss_pred HHhcCcHHHHHHHhCCCHHHHHHHHHhcc-HHHHHHhCCC-CHHHHHHHH
Confidence 6543 222222222 333444322 3445555544 366766664
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.17 Score=53.44 Aligned_cols=194 Identities=16% Similarity=0.017 Sum_probs=116.0
Q ss_pred HHHHHhhcc--CCHHHHHHHHHHHhhhcccCCCcc----------cCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHH
Q 007131 382 GLLLSLMQS--TQEDVQERAATGLATFVVINDENA----------SIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAA 449 (617)
Q Consensus 382 ~~l~~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~----------~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~ 449 (617)
..+.+.+.+ .+.++|..|+..|.|......... .+++..+. ..-..++..+.++++.++..++
T Consensus 42 ~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~-----~ik~~ll~~l~~~~~~vr~~~a 116 (861)
T d2bpta1 42 GLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKN-----QIKTNALTALVSIEPRIANAAA 116 (861)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHH
Confidence 566676743 457888888888888654332211 01111111 1235667778888999999999
Q ss_pred HHHHHhccchhhHHHHHHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCcchH-HHHHh--cCChHHHHHHHhhcCCC
Q 007131 450 KAIANLSVNAKVAKAVAEEGGINILAVLARSM-NRLVAEEAAGGLWNLSVGEEHK-GAIAD--AGGVKALVDLIFKWSSG 525 (617)
Q Consensus 450 ~~L~~ls~~~~~~~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~nL~~~~~~~-~~i~~--~g~i~~L~~ll~~~~~~ 525 (617)
.+++.++..+-.... ...-++.|++.+.+. +..++..|+.+|..++..-... ..+.. ...+..++..+.. ...
T Consensus 117 ~~i~~i~~~~~p~~~--wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~-~~~ 193 (861)
T d2bpta1 117 QLIAAIADIELPHGA--WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS-TET 193 (861)
T ss_dssp HHHHHHHHHHGGGTC--CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST-TCC
T ss_pred HHHHHHHHHhCCcCc--hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-ccC
Confidence 999988753211000 011256677776654 4567888889998887432211 11111 1123334444433 456
Q ss_pred CHHHHHHHHHHHHHhccCCCc--hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Q 007131 526 GDGVLERAAGALANLAADDKC--SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAA 584 (617)
Q Consensus 526 ~~~~~~~a~~~L~~l~~~~~~--~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 584 (617)
+..++..|+.++.++...-.. .........++.+...+.+++ ++++..|+.++..++.
T Consensus 194 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~~ 253 (861)
T d2bpta1 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMS 253 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 678999999999998754322 111122234566777777765 8999999999998875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=93.73 E-value=0.0099 Score=56.23 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHHHhcCCCCCeeeccCccCCcHHHHHHHHhcCCCCceEeecCCCCCCHHHHhcC-cCC
Q 007131 151 EALESLQLGPDFCERITSDAVKAIALCCPKLKKLRLSGIRDICGDAINALAKLCPNLTDIGFLDCLNVDEVALGNV-LSV 229 (617)
Q Consensus 151 ~~L~~L~l~~~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~-~~L 229 (617)
.+|++|+|+. + .++. +....++|++|+++++ .++. +....++|++|++.++ .++. +..+ +.|
T Consensus 38 ~~l~~LdLs~--~-~L~~-----lp~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~l~~n-~l~~--l~~lp~~L 100 (353)
T d1jl5a_ 38 RQAHELELNN--L-GLSS-----LPELPPHLESLVASCN-SLTE-----LPELPQSLKSLLVDNN-NLKA--LSDLPPLL 100 (353)
T ss_dssp HTCSEEECTT--S-CCSC-----CCSCCTTCSEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSC--CCSCCTTC
T ss_pred cCCCEEEeCC--C-CCCC-----CCCCCCCCCEEECCCC-CCcc-----cccchhhhhhhhhhhc-ccch--hhhhcccc
Confidence 4788999963 3 3432 2234578999999876 5542 2234568999999887 3332 2233 468
Q ss_pred CeecccCCCCCCHHHHHHHHhcCCCCCeEEeccCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 007131 230 RFLSVAGTSNMKWGVVSQVWHKLPKLVGLDVSRTDVGPITISRLLTSSKSLKVLCALNCPVLE 292 (617)
Q Consensus 230 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~~~ 292 (617)
++|++++|. ++. +.. ...+++|++|++.++.+.... ...+.+..+.+.++....
T Consensus 101 ~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~~~~~~~~ 154 (353)
T d1jl5a_ 101 EYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLEE 154 (353)
T ss_dssp CEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSS
T ss_pred ccccccccc-ccc--ccc-hhhhccceeeccccccccccc-----cccccccchhhccccccc
Confidence 999998873 432 111 246788999998886553221 235677777777665443
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.28 E-value=0.064 Score=46.86 Aligned_cols=143 Identities=16% Similarity=0.079 Sum_probs=90.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHH-----hhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHH-----
Q 007131 382 GLLLSLMQSTQEDVQERAATGL-----ATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKA----- 451 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L-----~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~----- 451 (617)
+.|..+++.+++.++..|+..| ..|. .+.+ ..-|......-..+.|..++.+++..++..++..
T Consensus 69 ~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~--~D~d----~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~ 142 (233)
T d1lrva_ 69 EALTPLIRDSDEVVRRAVAYRLPREQLSALM--FDED----REVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGR 142 (233)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTSCSGGGGGTT--TCSC----HHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGG
T ss_pred HHHHHHhcCCCHHHHHHHHHHcCHHHHHHHh--cCCC----hhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhH
Confidence 6778888889999998887654 2222 1222 2333445555556778888888899999888764
Q ss_pred HHHhcc--chhhHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHH-----HHhcCCc--chHHHHHhcCChHHHHHHHhhc
Q 007131 452 IANLSV--NAKVAKAVAEEGGINILAVLARSMNRLVAEEAAGGL-----WNLSVGE--EHKGAIADAGGVKALVDLIFKW 522 (617)
Q Consensus 452 L~~ls~--~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L-----~nL~~~~--~~~~~i~~~g~i~~L~~ll~~~ 522 (617)
|..+.. +.+.+..+...-+.+.|..++++.++.++..++..| ..+..++ ..|....+. ..+.++..|.
T Consensus 143 L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~-- 219 (233)
T d1lrva_ 143 LFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELD-- 219 (233)
T ss_dssp GGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCC--
T ss_pred HHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhC--
Confidence 333333 344666777666778888888888888988887653 3444433 344444443 3344556663
Q ss_pred CCCCHHHHHHHH
Q 007131 523 SSGGDGVLERAA 534 (617)
Q Consensus 523 ~~~~~~~~~~a~ 534 (617)
+.++.|++.|+
T Consensus 220 -D~d~~VR~aA~ 230 (233)
T d1lrva_ 220 -EPDPEVRLAIA 230 (233)
T ss_dssp -CCCHHHHHHHH
T ss_pred -CCCHHHHHHHH
Confidence 46666666654
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.22 E-value=1.1 Score=41.23 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=97.2
Q ss_pred hhCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHhccchhhHHHHHHh-CCHHHHHHHHhcCCHHHHHHHHHHH
Q 007131 426 KDGGIRLLLDLAKS-----------WREGLQSEAAKAIANLSVNAKVAKAVAEE-GGINILAVLARSMNRLVAEEAAGGL 493 (617)
Q Consensus 426 ~~~~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~-~~i~~L~~lL~~~~~~~~~~a~~~L 493 (617)
..+|+..|+.+|.. .+...+..++.+|..+..+..+...+... +++..++..|.++.+.++..|..+|
T Consensus 43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL 122 (343)
T d2bnxa1 43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence 45677777777641 12457788999999999988887777764 4589999999899999999999999
Q ss_pred HHhcCCc---ch----------HHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCc-------hHHHHHh
Q 007131 494 WNLSVGE---EH----------KGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDKC-------SMEVALA 553 (617)
Q Consensus 494 ~nL~~~~---~~----------~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~i~~~ 553 (617)
..++..+ ++ .....+.+-..++++.+.. ..+.+.+..++..+-.+....+. |..+...
T Consensus 123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~ 200 (343)
T d2bnxa1 123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL 200 (343)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST--TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc--cccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHC
Confidence 9988532 12 2233345677888888863 44567777788877777765554 5566666
Q ss_pred CCHHHHHHHHhcC
Q 007131 554 GGVHALVMLARSC 566 (617)
Q Consensus 554 ~~~~~L~~ll~~~ 566 (617)
|. ..+++-++..
T Consensus 201 Gl-~~il~~l~~~ 212 (343)
T d2bnxa1 201 GL-HQVLQELREI 212 (343)
T ss_dssp TH-HHHHHHHTTC
T ss_pred Ch-HHHHHHHHcc
Confidence 55 4455555543
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=3.9 Score=36.33 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=146.5
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhc-CCHHHHHHHHHHHHHhccchh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKS-WREGLQSEAAKAIANLSVNAK 460 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~ls~~~~ 460 (617)
..++.-|..-+-+.+..++.+..++.+.....+. -..+.+...- +.+..++.- +++++-..+-..|+.++.++.
T Consensus 72 ~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~---p~v~Yl~~~~--eil~~L~~gye~~eiAl~~G~mLREcik~e~ 146 (330)
T d1upka_ 72 STLVADLQLIDFEGKKDVAQIFNNILRRQIGTRT---PTVEYICTQQ--NILFMLLKGYESPEIALNCGIMLRECIRHEP 146 (330)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBC---HHHHHHHTCT--HHHHHHHHGGGSTTTHHHHHHHHHHHHTSHH
T ss_pred HHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCC---ccHHHHHcCH--HHHHHHHhhcCCcchhhhhhHHHHHHHhhHH
Confidence 6677777777778889999999998776554431 2224444321 333333332 367777788889999999999
Q ss_pred hHHHHHHhCCHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCcchHHHHHhc---CChHHHHHHHhhcCCCCHHHHHHHHHH
Q 007131 461 VAKAVAEEGGINILAVLARSMNRLVAEEAAGGLWNLS-VGEEHKGAIADA---GGVKALVDLIFKWSSGGDGVLERAAGA 536 (617)
Q Consensus 461 ~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~---g~i~~L~~ll~~~~~~~~~~~~~a~~~ 536 (617)
....+.....+..+.+....++=++...|..++..|- .++.....+... ..+...-.+| .+++--.++.++..
T Consensus 147 lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL---~s~NYVtrRqSlKL 223 (330)
T d1upka_ 147 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL---HSENYVTKRQSLKL 223 (330)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT---TCSSHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHh---cCCchHHHHHHHHH
Confidence 9999999888999999998999999999999998875 454556666653 2455566677 46787899999999
Q ss_pred HHHhccCCCchHHHHHh----CCHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCC
Q 007131 537 LANLAADDKCSMEVALA----GGVHALVMLARSCKFEGVQEQAARALANLAAHGDS 588 (617)
Q Consensus 537 L~~l~~~~~~~~~i~~~----~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 588 (617)
|+.+-.+..+...|... .-+..++.+|++.. ..++..|..+..-..+.+..
T Consensus 224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s-k~Iq~EAFhVFKvFVANpnK 278 (330)
T d1upka_ 224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNK 278 (330)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch-hhHHHHhhhHhhhhhcCCCC
Confidence 99999998887776543 33677888888764 89999999999888875543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=3.8 Score=42.59 Aligned_cols=189 Identities=13% Similarity=0.069 Sum_probs=112.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhhcccCCCcccCCchhHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchhh
Q 007131 382 GLLLSLMQSTQEDVQERAATGLATFVVINDENASIDCGRAEAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAKV 461 (617)
Q Consensus 382 ~~l~~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~~ 461 (617)
+.+...+.+++++++..++..+..++....+.. .........+.+.....+.+++++..++..+..++.....
T Consensus 220 ~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 292 (876)
T d1qgra_ 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM-------ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC-------HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 556666678889999999999998875543322 2233334445566667777888888888877777652211
Q ss_pred -----HHHHHH----------------hCCHHHHHHHHhcC-------CHHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 007131 462 -----AKAVAE----------------EGGINILAVLARSM-------NRLVAEEAAGGLWNLSVGEEHKGAIADAGGVK 513 (617)
Q Consensus 462 -----~~~i~~----------------~~~i~~L~~lL~~~-------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~ 513 (617)
...... ...++.+...+... ...++..|..++..++.... ..+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-------~~~~~ 365 (876)
T d1qgra_ 293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-------DDIVP 365 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-------GGGHH
T ss_pred HHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhh-------hhhhh
Confidence 011100 01122233333221 11366677777766653221 12344
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHhccCCCc-hHHHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 514 ALVDLIFK-WSSGGDGVLERAAGALANLAADDKC-SMEVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 514 ~L~~ll~~-~~~~~~~~~~~a~~~L~~l~~~~~~-~~~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
.++..+.. ..+.+...++.++.++..++..... ...-.-...++.++..+.+++ +.++..|++++..++..
T Consensus 366 ~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHHHH
Confidence 44444433 1456777888888888888754332 111122346677888888764 89999999999999864
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=2.3 Score=44.38 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=70.7
Q ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCC
Q 007131 470 GINILAVLARSM--NRLVAEEAAGGLWNLSVGEEHKGAIAD--AGGVKALVDLIFKWSSGGDGVLERAAGALANLAADDK 545 (617)
Q Consensus 470 ~i~~L~~lL~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~~~~~ 545 (617)
.++.|.+.+.++ +..+++.++.+|..++..-.. ..+.. ...++.++..+.. .+.+..++..|+.++.+......
T Consensus 129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~-~~~~~~~~~il~~i~~~l~~-~~~~~~v~~~a~~~l~~~~~~~~ 206 (876)
T d1qgra_ 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP-EQLQDKSNEILTAIIQGMRK-EEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH-HHHGGGHHHHHHHHHHHHST-TCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHcC-cCccHHHHHHHHHHHHHHHHHhh
Confidence 477788887664 367788888888888642211 11111 2356677777754 45567889999998888764322
Q ss_pred chH--HHHHhCCHHHHHHHHhcCCchhHHHHHHHHHHHHhcc
Q 007131 546 CSM--EVALAGGVHALVMLARSCKFEGVQEQAARALANLAAH 585 (617)
Q Consensus 546 ~~~--~i~~~~~~~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 585 (617)
... .....-.++.+...+.+++ ++++..|+.+|..+...
T Consensus 207 ~~~~~~~~~~~i~~~l~~~~~~~~-~~v~~~~~~~l~~l~~~ 247 (876)
T d1qgra_ 207 ANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSL 247 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHH
Confidence 210 1111123445555556654 89999999999998863
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.40 E-value=2.2 Score=37.98 Aligned_cols=188 Identities=13% Similarity=0.033 Sum_probs=131.1
Q ss_pred HHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHhccchh-----hHHHHHHhCCHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 007131 422 EAVMKDGGIRLLLDLAKSWREGLQSEAAKAIANLSVNAK-----VAKAVAEEGGINILAVLARS-MNRLVAEEAAGGLWN 495 (617)
Q Consensus 422 ~~i~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ls~~~~-----~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~n 495 (617)
..+...+.+..|+.-|..-+-+.|..++.+..++-.... ..+.+... -+.|..++.. +++++...+...|..
T Consensus 63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE 140 (330)
T d1upka_ 63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE 140 (330)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence 457778888899998888889999999999999887322 22334322 2444444443 567777778888888
Q ss_pred hcCCcchHHHHHhcCChHHHHHHHhhcCCCCHHHHHHHHHHHHHhc-cCCCchHHHHHhCC---HHHHHHHHhcCCchhH
Q 007131 496 LSVGEEHKGAIADAGGVKALVDLIFKWSSGGDGVLERAAGALANLA-ADDKCSMEVALAGG---VHALVMLARSCKFEGV 571 (617)
Q Consensus 496 L~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~---~~~L~~ll~~~~~~~~ 571 (617)
....+.....+.....+..+.+.+. .++-++...|..++..+- .++.....+...+. +..+..++.+++ =-+
T Consensus 141 cik~e~lak~iL~s~~f~~fF~yv~---~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~N-YVt 216 (330)
T d1upka_ 141 CIRHEPLAKIILWSEQFYDFFRYVE---MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN-YVT 216 (330)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTT---CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-HHH
T ss_pred HHhhHHHHHHHHccHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCc-hHH
Confidence 8888888888888888999999884 478889999999998885 44444455555443 455666777775 578
Q ss_pred HHHHHHHHHHHhccCCCCCCccccccccCcHHHHHHHhcCCCCC
Q 007131 572 QEQAARALANLAAHGDSNSNNSAVGQEAGALEALVQLTRSPHEG 615 (617)
Q Consensus 572 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 615 (617)
+..+...|..+-.+.........-+.+..-+..+..++++++..
T Consensus 217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~ 260 (330)
T d1upka_ 217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRN 260 (330)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhh
Confidence 88999999998875443222222233344566666777776544
|