Citrus Sinensis ID: 007135

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------
MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccc
cHHHHHHHccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcEcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHccc
mahqliasvpaanftrlqprscissvgslnisnsngfraspvqctaANATSVCEKAIsnrrsanyqpsmwgydYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLqrlgvsyhFEDEIKRFLSRIYNernsrssyhakekqESSLYAVALEFRLLRqhgfdmhaqGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKhnnndddgYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWwrktglgelhFARDRIMENFFWALGevwepqfgycrrmSTKANALITTIDDVYDVYGTLDELELFTNAVErwdvnamdqlPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWyssgyiptleeymdnawisvsGPVILLHAYtlianpptkEALQFLeeypniirwpSMIFRLANdlatssdevkrgdvpkAIQCYmhetgasesDAREHIRDLITATWMKmnskdgdenpdhlllsNNFIRFAINLARMAQctyqngdghtiqhksknrvlpllvhpvslinl
mahqliasvpaanftrlqprSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAisnrrsanyqpSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNErnsrssyhakekqeSSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELkyvsrwwrKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLatssdevkrgdVPKAIQCYMhetgasesdarEHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQhksknrvlpllvhpvslinl
MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGIlalyeaayllveeeSNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
*************FT*L***SCISSVGSLNI*****FRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYN*****************LYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLAT*********VPKAIQCYMH***********HIRDLITATWMK***********HLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSL***
********VPAA*FT*L***********************************************YQPSMWGYDYLQSLSNE****S*******LKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLIN*
MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERN************SSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
******A***AANFTRLQ*********SL***********PVQCTA************NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLI*L
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAHQLIASVPAANFTRLQPRSCISSVGSLNISNSNGFRASPVQCTAANATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVxxxxxxxxxxxxxxxxxxxxxKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHKSKNRVLPLLVHPVSLINL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query616 2.2.26 [Sep-21-2011]
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.951 0.976 0.616 0.0
Q93X23597 Myrcene synthase, chlorop N/A no 0.961 0.991 0.575 0.0
Q6PWU2590 (-)-alpha-terpineol synth no no 0.943 0.984 0.566 0.0
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.891 0.927 0.536 1e-171
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.951 0.965 0.481 1e-164
A7IZZ1622 (-)-limonene synthase, ch N/A no 0.946 0.937 0.473 1e-154
Q8L5K3606 (R)-limonene synthase 1 O N/A no 0.925 0.940 0.462 1e-153
Q9LRZ6598 Beta-myrcene/(E)-beta-oci yes no 0.884 0.911 0.487 1e-152
Q9ZUH4591 Tricyclene synthase, chlo no no 0.909 0.947 0.472 1e-152
A4FVP2565 Tricyclene synthase, chlo no no 0.894 0.975 0.488 1e-150
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function desciption
 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/624 (61%), Positives = 473/624 (75%), Gaps = 38/624 (6%)

Query: 1   MAHQLIASVPAA-NFTRLQPRSCISSVGSLNISNS-NGFRA--SPVQCTAANATSVCEKA 56
           MA  L++S+PAA NFTRL          SL +S+  NGF    + VQ   A +TS  +  
Sbjct: 1   MALNLLSSLPAACNFTRL----------SLPLSSKVNGFVPPITQVQYPMAASTSSIKPV 50

Query: 57  ISN--RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLE--NKEVDYVDA 112
                RRSA+Y P++W +DY+QSL ++Y  ESYA+++EKLK +V  ML+  NK VD +D 
Sbjct: 51  DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVD-LDP 109

Query: 113 LHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLL 172
           LHQLE++DNL RLGVSYHFEDEIKR L RI+N+  ++S           LYA AL+FR+L
Sbjct: 110 LHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKS-----------LYARALKFRIL 158

Query: 173 RQHGFDMHAQGTLSLFMDEKGKLK-SCLGDDIKGILALYEAAYLLVEEESNIFNEAINFT 231
           RQ+G+    + T S FMDEKG  K S   D+ KG+LALYEAAYLLVEEES+IF +AI FT
Sbjct: 159 RQYGYKTPVKETFSRFMDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFRDAIRFT 218

Query: 232 TTHLKEYV-KHN-NNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLV 289
           T +LKE+V KH+ + +D+ YL TLV+HALELPLHWRM RLEARWFID+Y+ GPD+N +L+
Sbjct: 219 TAYLKEWVAKHDIDKNDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 278

Query: 290 ELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYC 348
           ELAK+D+N VQA HQE+LKYVSRWW+KTGLGE L+FARDR++ENFFW +G+++EPQFGYC
Sbjct: 279 ELAKVDYNIVQAVHQEDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYC 338

Query: 349 RRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNST 408
           RRMS   N L+T+IDDVYDVYGTLDELELFT+AVERWD    +QLPYYMKLCF  L+NS 
Sbjct: 339 RRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSV 398

Query: 409 NEMAFDVLKKQGVH-IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGP 467
           NEM F  L+ Q V  IIPYLKKAWAD CKS+L+EAKWY+SGYIPTL+EYM+NAWISV+ P
Sbjct: 399 NEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAP 458

Query: 468 VILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQC 527
           V+LLHAY   ANP TKEAL+FL++ P+IIR  SMI RL +DL TSSDE+KRGDVPK+IQC
Sbjct: 459 VMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQC 518

Query: 528 YMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY 587
           YMHETG SE +AREHIRDLI  TWMKMNS      P    L + FI  A+NL RM+QC Y
Sbjct: 519 YMHETGVSEDEAREHIRDLIAETWMKMNSARFGNPP---YLPDVFIGIAMNLVRMSQCMY 575

Query: 588 QNGDGHTIQHKSKNRVLPLLVHPV 611
             GDGH +Q  +K+RVL L + P+
Sbjct: 576 LYGDGHGVQENTKDRVLSLFIDPI 599
Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 4
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L5K3|RLC1_CITLI (R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1 Back     alignment and function description
>sp|Q9LRZ6|MYRS2_ARATH Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUH4|TPSA_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1 Back     alignment and function description
>sp|A4FVP2|TPS03_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query616
61161985617 (E)-beta-ocimene synthase [Citrus unshiu 0.983 0.982 0.838 0.0
61161981602 monoterpene synthase [Citrus unshiu] 0.952 0.975 0.620 0.0
75245637600 RecName: Full=Gamma-terpinene synthase, 0.951 0.976 0.616 0.0
49659441600 gamma-terpinene synthase [Citrus unshiu] 0.946 0.971 0.618 0.0
49659439600 gamma-terpinene synthase [Citrus unshiu] 0.946 0.971 0.617 0.0
322424199602 pinene synthase [Citrus hystrix] 0.952 0.975 0.606 0.0
152962686602 beta-pinene synthase [Citrus jambhiri] 0.952 0.975 0.604 0.0
21435705602 (-)-beta-pinene synthase [Citrus limon] 0.952 0.975 0.604 0.0
49659443602 beta-pinene synthase [Citrus unshiu] 0.952 0.975 0.601 0.0
75249335597 RecName: Full=Myrcene synthase, chloropl 0.961 0.991 0.575 0.0
>gi|61161985|dbj|BAD91046.1| (E)-beta-ocimene synthase [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1053 bits (2723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/620 (83%), Positives = 562/620 (90%), Gaps = 14/620 (2%)

Query: 1   MAHQLIASVPAANFTRLQ-PRSCISSVGSLNIS--NSNGFRASPVQCTAANATSVCEKAI 57
           MAHQL+ SVPA   TRLQ PRS ISS+GS +IS  NSNGF ASP+QC +A  T V +KAI
Sbjct: 1   MAHQLMTSVPA--LTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSA--TKVRDKAI 56

Query: 58  S-NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLEN-KEVD-YVDALH 114
           + NRRSANYQPSMW YDYLQSLSN YV ES AQRIEKLKGEVRLML+N KEVD YVDALH
Sbjct: 57  NDNRRSANYQPSMWSYDYLQSLSNGYVGESCAQRIEKLKGEVRLMLDNYKEVDDYVDALH 116

Query: 115 QLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSR--SSYHAKEKQESSLYAVALEFRLL 172
            LEIVDNLQRLGVSYHFE EIKRFL+ IYN+RNSR  S+YHAKE QES LYA +LEFRLL
Sbjct: 117 CLEIVDNLQRLGVSYHFEGEIKRFLNSIYNKRNSRRSSTYHAKENQESLLYAASLEFRLL 176

Query: 173 RQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTT 232
           RQHG+D+HA GTLS FMDEKGK KSCLGDDIKGILALYEAAYLL EEES IF+EAINFTT
Sbjct: 177 RQHGYDIHAHGTLSSFMDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTT 236

Query: 233 THLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELA 292
           THL+EYVK  +NDDDGY S LV HALELPLHWRMVRLEARWFID+Y+RG D+N VLVELA
Sbjct: 237 THLEEYVK-KHNDDDGYFSALVNHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELA 295

Query: 293 KLDFNAVQAEHQEELKYVSRWWRKTGLGELHFARDRIMENFFWALGEVWEPQFGYCRRMS 352
           KLDFN+VQA HQ+ELKYVS WWRKTGLGELHFARDRI+ENFFWALGE+WEPQFGYCRRMS
Sbjct: 296 KLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRILENFFWALGEIWEPQFGYCRRMS 355

Query: 353 TKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMA 412
           TK NALITTIDDVYDVYGTLDELE FTNAVERWDVNAMDQLPYYMKLCF VLH+STNEMA
Sbjct: 356 TKVNALITTIDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKLCFHVLHSSTNEMA 415

Query: 413 FDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLH 472
           FD LK QGVH++PYLKKAWADMCKSFLLEAKWYSSGYIPTL+EY++NAW+SVSGPVILLH
Sbjct: 416 FDTLKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLH 475

Query: 473 AYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET 532
           AYTLIANP  +EALQFL+EYP+IIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET
Sbjct: 476 AYTLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET 535

Query: 533 GASESDAREHIRDLITATWMKMNSK-DGDENPDHLLLSNNFIRFAINLARMAQCTYQNGD 591
           GASESDAR HIRDLITA WMKMN+K +GDENPDHLLL NNF++FA+NLARMAQCTYQNGD
Sbjct: 536 GASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGD 595

Query: 592 GHTIQHKSKNRVLPLLVHPV 611
            HT+Q  SKNRVLPLL+HP+
Sbjct: 596 RHTVQDNSKNRVLPLLIHPI 615

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|61161981|dbj|BAD91045.1| monoterpene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|75245637|sp|Q8L5K4.1|GTPS_CITLI RecName: Full=Gamma-terpinene synthase, chloroplastic; Short=ClgammaTS; Flags: Precursor gi|21435701|gb|AAM53943.1|AF514286_1 gamma-terpinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|49659441|dbj|BAD27259.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659439|dbj|BAD27258.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|322424199|gb|ADX01381.1| pinene synthase [Citrus hystrix] Back     alignment and taxonomy information
>gi|152962686|dbj|BAF73933.1| beta-pinene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|21435705|gb|AAM53945.1|AF514288_1 (-)-beta-pinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|49659443|dbj|BAD27260.1| beta-pinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|75249335|sp|Q93X23.1|MYRS_QUEIL RecName: Full=Myrcene synthase, chloroplastic; Flags: Precursor gi|14331015|emb|CAC41012.1| putative chloroplast terpene synthase [Quercus ilex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query616
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.949 0.975 0.596 2.3e-188
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.883 0.918 0.527 2.5e-152
TAIR|locus:2086004598 AT3G25810 [Arabidopsis thalian 0.884 0.911 0.478 1e-139
TAIR|locus:2047510591 TPS10 "terpene synthase 10" [A 0.899 0.937 0.463 8.3e-138
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.870 0.988 0.467 3.6e-137
TAIR|locus:2129101565 TPS03 "terpene synthase 03" [A 0.865 0.943 0.492 3.7e-135
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.881 0.905 0.468 4.7e-135
TAIR|locus:2086014600 TPS-CIN ""terpene synthase-lik 0.881 0.905 0.468 4.7e-135
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.829 0.847 0.471 2.2e-128
UNIPROTKB|Q50L36595 ISPS "Isoprene synthase, chlor 0.896 0.927 0.453 3.6e-128
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 1826 (647.8 bits), Expect = 2.3e-188, P = 2.3e-188
 Identities = 373/625 (59%), Positives = 463/625 (74%)

Query:     1 MAHQLIASVPAA-NFTRLQPRSCISSVGSLNISNS-NGF--RASPVQCTAANATSVCEKA 56
             MA  L++S+PAA NFTRL          SL +S+  NGF    + VQ   A +TS  +  
Sbjct:     1 MALNLLSSLPAACNFTRL----------SLPLSSKVNGFVPPITQVQYPMAASTSSIKPV 50

Query:    57 ISN--RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLE--NKEVDYVDA 112
                  RRSA+Y P++W +DY+QSL ++Y  ESYA+++EKLK +V  ML+  NK VD +D 
Sbjct:    51 DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVD-LDP 109

Query:   113 LHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLL 172
             LHQLE++DNL RLGVSYHFEDEIKR L RI+N+  ++S           LYA AL+FR+L
Sbjct:   110 LHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKS-----------LYARALKFRIL 158

Query:   173 RQHGFDMHAQGTLSLFMDEKGKLK-SCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFT 231
             RQ+G+    + T S FMDEKG  K S   D+ KG+              S+IF +AI FT
Sbjct:   159 RQYGYKTPVKETFSRFMDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFRDAIRFT 218

Query:   232 TTHLKEYV-KHN-NNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLV 289
             T +LKE+V KH+ + +D+ YL TLV+HALELPLHWRM RLEARWFID+Y+ GPD+N +L+
Sbjct:   219 TAYLKEWVAKHDIDKNDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 278

Query:   290 ELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYC 348
             ELAK+D+N VQA HQE+LKYVSRWW+KTGLGE L+FARDR++ENFFW +G+++EPQFGYC
Sbjct:   279 ELAKVDYNIVQAVHQEDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYC 338

Query:   349 RRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNST 408
             RRMS   N L+T+IDDVYDVYGTLDELELFT+AVERWD    +QLPYYMKLCF  L+NS 
Sbjct:   339 RRMSAMVNCLLTSIDDVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSV 398

Query:   409 NEMAFDVLKKQGVH-IIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGP 467
             NEM F  L+ Q V  IIPYLKKAWAD CKS+L+EAKWY+SGYIPTL+EYM+NAWISV+ P
Sbjct:   399 NEMGFIALRDQEVGMIIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAP 458

Query:   468 VILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQC 527
             V+LLHAY   ANP TKEAL+FL++ P+IIR  SMI RL +DL TSSDE+KRGDVPK+IQC
Sbjct:   459 VMLLHAYAFTANPITKEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQC 518

Query:   528 YMHETGASESDAREHIRDLITATWMKMNS-KDGDENPDHLLLSNNFIRFAINLARMAQCT 586
             YMHETG SE +AREHIRDLI  TWMKMNS + G  NP +L   + FI  A+NL RM+QC 
Sbjct:   519 YMHETGVSEDEAREHIRDLIAETWMKMNSARFG--NPPYL--PDVFIGIAMNLVRMSQCM 574

Query:   587 YQNGDGHTIQHKSKNRVLPLLVHPV 611
             Y  GDGH +Q  +K+RVL L + P+
Sbjct:   575 YLYGDGHGVQENTKDRVLSLFIDPI 599
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|Q50L36 ISPS "Isoprene synthase, chloroplastic" [Populus alba (taxid:43335)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LRZ6MYRS2_ARATH4, ., 2, ., 3, ., 1, 50.48750.88470.9113yesno
Q8L5K4GTPS_CITLI4, ., 2, ., 3, ., 1, 1, 40.61690.95120.9766N/Ano
B3TPQ7ATESY_MAGGA4, ., 2, ., 3, ., 1, 1, 20.53640.89120.9273N/Ano
Q93X23MYRS_QUEIL4, ., 2, ., 3, ., 1, 50.57560.96100.9916N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963
3rd Layer4.2.3.27LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query616
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-106
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-101
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-63
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-50
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-33
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 9e-27
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  669 bits (1729), Expect = 0.0
 Identities = 265/557 (47%), Positives = 359/557 (64%), Gaps = 21/557 (3%)

Query: 60  RRSANYQPSMWGYDYLQSLSNEYVVES-YAQRIEKLKGEVRLMLENKEVDYVDALHQLEI 118
           R SAN+ PS+WG D+  SLS++Y  E    + IE+LK EVR MLE+     VD   +L +
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLED-SEYPVDLFERLWL 59

Query: 119 VDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFD 178
           +D LQRLG+SYHFEDEIK  L  IY     R      E  E  LY  AL FRLLRQHG++
Sbjct: 60  IDRLQRLGISYHFEDEIKEILDYIYRYWTER-----GESNEDDLYTTALGFRLLRQHGYN 114

Query: 179 MHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAINFTTTHLKEY 238
           + +      F DE GK K  L  D+KG+L+LYEA++L    E  I +EA++FTT HL+E 
Sbjct: 115 V-SSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGED-ILDEALSFTTKHLEEK 172

Query: 239 VKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNA 298
           ++ N   D   LS  +E+ALE+PLH  + RLEARW+I+ Y++  D N+ L+ELAKLDFN 
Sbjct: 173 LESNWIID-PDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNI 231

Query: 299 VQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANA 357
           +QA HQEELK +SRWW+   L   L FARDR++E +FWA G  +EPQ+   R    K  A
Sbjct: 232 LQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIA 291

Query: 358 LITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLK 417
           LIT IDD YDVYGTL+ELELFT AVERWD++A+DQLP YMK+ F  L N+ NE+  ++LK
Sbjct: 292 LITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLK 351

Query: 418 KQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLI 477
           + G +++PYLK+AW D+ K++L+EAKW   GY+PT EEYM+NA +S+    +LL ++  +
Sbjct: 352 EGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGM 411

Query: 478 ANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES 537
            +  T+EA ++LE  P ++R  S I RL ND+AT  DE+KRGDV  +I+CYM E G SE 
Sbjct: 412 GDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEE 471

Query: 538 DAREHIRDLITATWMKMNS---KDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHT 594
           +ARE I+ +I   W ++N    K   + P  +       +  +NLAR+    Y+ GDG T
Sbjct: 472 EAREEIKKMIEDAWKELNEEFLKPSSDVPRPIK------QRFLNLARVIDVFYKEGDGFT 525

Query: 595 IQHKS-KNRVLPLLVHP 610
                 K+ +  LL  P
Sbjct: 526 HPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 616
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.96
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.82
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.38
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.23
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 88.63
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 86.5
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 82.79
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 81.85
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.8e-151  Score=1270.25  Aligned_cols=536  Identities=49%  Similarity=0.819  Sum_probs=512.3

Q ss_pred             CCCCCCCCCCCCcCccccCCchhhhh-HHHHHHHHHHHHHHHHhhcc--cccccchhhhHHHHHHHHHhCCccccHHHHH
Q 007135           60 RRSANYQPSMWGYDYLQSLSNEYVVE-SYAQRIEKLKGEVRLMLENK--EVDYVDALHQLEIVDNLQRLGVSYHFEDEIK  136 (616)
Q Consensus        60 r~~~~~~ps~W~~~fl~~~~~~~~~~-~~~~~~~~lk~~V~~~l~~~--~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~  136 (616)
                      |++++||||+||++++++++.++... .+.+++++||++||+|+...  +   .|++++|++||+||||||+|||++||+
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~---~~~~~~l~liD~lqrLGi~~hF~~EI~   77 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYP---VDLFERLWLIDRLQRLGISYHFEDEIK   77 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccC---CCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence            78999999999995555545444433 78899999999999999864  3   699999999999999999999999999


Q ss_pred             HHHHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccC
Q 007135          137 RFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLL  216 (616)
Q Consensus       137 ~~L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~  216 (616)
                      ++|++||+.|.+++     +....||++|||+|||||||||+||| |||++|||++|+|++++.+||+|||||||||||+
T Consensus        78 ~~L~~i~~~~~~~~-----~~~~~dl~~~al~FRlLR~~Gy~vs~-dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~  151 (542)
T cd00684          78 EILDYIYRYWTERG-----ESNEDDLYTTALGFRLLRQHGYNVSS-DVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLS  151 (542)
T ss_pred             HHHHHHHHhhcccc-----cccCCCHHHHHHHHHHHHHcCCCcCH-HHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcC
Confidence            99999999987543     22368999999999999999999999 9999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhh
Q 007135          217 VEEESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDF  296 (616)
Q Consensus       217 ~~gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDF  296 (616)
                      |||| +|||||++||++||+++++++ ++++++|+++|++||++|||+++||||||+||++|++++++|++|||||||||
T Consensus       152 ~~gE-~iLdeA~~ft~~~L~~~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldf  229 (542)
T cd00684         152 FPGE-DILDEALSFTTKHLEEKLESN-WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDF  229 (542)
T ss_pred             CCCc-HHHHHHHHHHHHHHHHHhhcc-CCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHH
Confidence            9999 999999999999999999864 56788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHH
Q 007135          297 NAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDEL  375 (616)
Q Consensus       297 n~~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl  375 (616)
                      |+||++||+||++++|||+++||.+ |||+|+|+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|+
T Consensus       230 n~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl  309 (542)
T cd00684         230 NILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEEL  309 (542)
T ss_pred             HHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHH
Confidence            9999999999999999999999999 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHh
Q 007135          376 ELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEE  455 (616)
Q Consensus       376 ~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleE  455 (616)
                      +.||+||+|||+++++.+|+|||+||.+|++++++++.++.+.+|+++++|++++|+++++||++||+|+++||+||++|
T Consensus       310 ~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eE  389 (542)
T cd00684         310 ELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEE  389 (542)
T ss_pred             HHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCC
Q 007135          456 YMDNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGAS  535 (616)
Q Consensus       456 Yl~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~S  535 (616)
                      ||++|.+|+|++++++++++++|..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|
T Consensus       390 Yl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s  469 (542)
T cd00684         390 YMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVS  469 (542)
T ss_pred             HHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCC
Confidence            99999999999999999999999999999999987779999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhcccc
Q 007135          536 ESDAREHIRDLITATWMKMNSKDGDE-NPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHP  610 (616)
Q Consensus       536 eEeA~~~i~~mI~~~wK~lN~e~l~~-~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~p  610 (616)
                      +|||+++++++|+++||+||++++++ ++    +|++|+++++|+||+++++|+++||||.|+. ||++|++||++|
T Consensus       470 ~eeA~~~i~~~ie~~wk~ln~e~l~~~~~----~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         470 EEEAREEIKKMIEDAWKELNEEFLKPSSD----VPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999999999987 56    9999999999999999999999999999866 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query616
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-139
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-133
2j5c_A569 Rational Conversion Of Substrate And Product Specif 1e-129
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-124
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-83
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-83
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-83
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-83
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 2e-83
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-83
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 5e-83
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 2e-82
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 5e-82
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 6e-82
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 5e-73
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 2e-72
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-62
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-18
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  491 bits (1264), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/554 (46%), Positives = 351/554 (63%), Gaps = 20/554 (3%)
Query: 60  RRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIV 119
           RRSA+Y+P+ W YD+L S   +  +E Y  + +KL+ EVR  + N++ ++   L  LE++
Sbjct: 15  RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEF---LTLLELI 71
Query: 120 DNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDM 179
           DN+QRLG+ Y FE +I+R L R      S   +    K  +SL+A AL FRLLRQHGF++
Sbjct: 72  DNVQRLGLGYRFESDIRRALDRFV----SSGGFDGVTK--TSLHATALSFRLLRQHGFEV 125
Query: 180 HAQGTLSLFMDEKGKLKSCLGDDIKGIXXXXXXXXXXXXXXSNIFNEAINFTTTHLKEYV 239
            +Q   S F D+ G     L +D K I               NI +EA  F  +HLKE  
Sbjct: 126 -SQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEG-ENILDEARVFAISHLKELS 183
Query: 240 KHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNAV 299
           +     +   L+  V HALELPLH R  RLEA W I+ Y++  D NQVL+ELA LD+N +
Sbjct: 184 EEKIGKE---LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMI 240
Query: 300 QAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANAL 358
           Q+ +Q +L+  SRWWR+ GL  +LHFARDR++E+F+WA+G  +EPQ+  CR    K  + 
Sbjct: 241 QSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSF 300
Query: 359 ITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKK 418
           +T IDD+YDVYGTLDELELFT+AVERWDVNA++ LP YMKLCFL L+N+ NE+A+D LK 
Sbjct: 301 VTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKD 360
Query: 419 QGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIA 478
           +G +I+PYL KAWAD+C +FL EAKW  +   PT ++Y  NAW S SGP+ L+ AY  + 
Sbjct: 361 KGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVV 420
Query: 479 NPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESD 538
               KE ++ L++Y +II  PS IFRL NDLA++S E+ RG+   ++ CYM   G SE  
Sbjct: 421 QNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEEL 480
Query: 539 AREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK 598
           A E + +LI  TW KMN     E     L +  F+  AINLAR + CTY NGD HT   +
Sbjct: 481 ATESVMNLIDETWKKMNK----EKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDE 536
Query: 599 -SKNRVLPLLVHPV 611
            ++ RVL ++  P+
Sbjct: 537 LTRKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query616
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-159
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-156
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-151
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-10
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-118
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 6e-28
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 3e-13
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 5e-06
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
 Score =  541 bits (1395), Expect = 0.0
 Identities = 263/568 (46%), Positives = 362/568 (63%), Gaps = 20/568 (3%)

Query: 49  ATSVCEKAISNRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVD 108
           +          RRSA+Y+P+ W YD+L S   +  +E Y  + +KL+ EVR  + N++ +
Sbjct: 4   SHHHHHHGSEARRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAE 63

Query: 109 YVDALHQLEIVDNLQRLGVSYHFEDEIKRFLSRIYNERNSRSSYHAKEKQESSLYAVALE 168
           +   L  LE++DN+QRLG+ Y FE +I+R L R  +      S       ++SL+A AL 
Sbjct: 64  F---LTLLELIDNVQRLGLGYRFESDIRRALDRFVS------SGGFDGVTKTSLHATALS 114

Query: 169 FRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVEEESNIFNEAI 228
           FRLLRQHGF++  Q   S F D+ G     L +D K IL+LYEA++L +E E NI +EA 
Sbjct: 115 FRLLRQHGFEVS-QEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGE-NILDEAR 172

Query: 229 NFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVL 288
            F  +HLKE  +     +   L+  V HALELPLH R  RLEA W I+ Y++  D NQVL
Sbjct: 173 VFAISHLKELSEEKIGKE---LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVL 229

Query: 289 VELAKLDFNAVQAEHQEELKYVSRWWRKTGLG-ELHFARDRIMENFFWALGEVWEPQFGY 347
           +ELA LD+N +Q+ +Q +L+  SRWWR+ GL  +LHFARDR++E+F+WA+G  +EPQ+  
Sbjct: 230 LELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSD 289

Query: 348 CRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNS 407
           CR    K  + +T IDD+YDVYGTLDELELFT+AVERWDVNA++ LP YMKLCFL L+N+
Sbjct: 290 CRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNT 349

Query: 408 TNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWISVSGP 467
            NE+A+D LK +G +I+PYL KAWAD+C +FL EAKW  +   PT ++Y  NAW S SGP
Sbjct: 350 INEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGP 409

Query: 468 VILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQC 527
           + L+ AY  +     KE ++ L++Y +II  PS IFRL NDLA++S E+ RG+   ++ C
Sbjct: 410 LQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSC 469

Query: 528 YMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTY 587
           YM   G SE  A E + +LI  TW KMN     E     L +  F+  AINLAR + CTY
Sbjct: 470 YMRTKGISEELATESVMNLIDETWKKMN----KEKLGGSLFAKPFVETAINLARQSHCTY 525

Query: 588 QNGDGHTIQH-KSKNRVLPLLVHPVSLI 614
            NGD HT     ++ RVL ++  P+   
Sbjct: 526 HNGDAHTSPDELTRKRVLSVITEPILPF 553
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query616
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.97
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.66
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.47
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 85.98
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 83.37
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 81.57
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-165  Score=1369.24  Aligned_cols=532  Identities=35%  Similarity=0.637  Sum_probs=496.5

Q ss_pred             cCCCCCCCCCCCCcCccccCCchhhhhHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHhCCccccHHHHHHH
Q 007135           59 NRRSANYQPSMWGYDYLQSLSNEYVVESYAQRIEKLKGEVRLMLENKEVDYVDALHQLEIVDNLQRLGVSYHFEDEIKRF  138 (616)
Q Consensus        59 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~V~~~l~~~~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~  138 (616)
                      .||++|||||+|||+||++ ++++..+.+.+++++||++||+||....   .|++++|+|||+||||||+|||++||+++
T Consensus        21 ~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~---~~~~~~l~lID~lqrLGi~~hF~~EI~~~   96 (554)
T 3g4d_A           21 MRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPM---ANSTQKLAFIDSVQRLGVSYHFTKEIEDE   96 (554)
T ss_dssp             ----CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCC---SSHHHHHHHHHHHHHTTCGGGCHHHHHHH
T ss_pred             CCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            6999999999999999999 7677788899999999999999997532   69999999999999999999999999999


Q ss_pred             HHHHHhhccCCccccccccccCChHHHHHHHHHHHhcCCCCCcccccccccccccccccccccchHHHHHHHHhhccCCc
Q 007135          139 LSRIYNERNSRSSYHAKEKQESSLYAVALEFRLLRQHGFDMHAQGTLSLFMDEKGKLKSCLGDDIKGILALYEAAYLLVE  218 (616)
Q Consensus       139 L~~i~~~~~~~~~~~~r~~~~~dl~~~al~FRLLR~hGy~vS~~dvf~~F~d~~G~F~~~l~~dv~glL~LYeAS~l~~~  218 (616)
                      |++||+. . .      . ...||++|||+|||||||||+||| |||++|+|++|+|++++.+||+|||||||||||++|
T Consensus        97 L~~i~~~-~-~------~-~~~dl~~~al~FRlLR~hGy~VS~-dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~  166 (554)
T 3g4d_A           97 LENIYHN-N-N------D-AENDLYTTSIRFRLLREHGYNVSC-DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVH  166 (554)
T ss_dssp             HHHHHHS-C-C------C-TTCCHHHHHHHHHHHHHTTCCCCG-GGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCT
T ss_pred             HHHHHhc-c-C------C-CCCCHHHHHHHHHHHHhcCCCCCh-hHHhhhcccCCCcccccccchHHHHHHHHHHhCCCC
Confidence            9999985 1 1      1 137999999999999999999999 999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhHHHHHHHHhcCCCCCCCcHHHHHHHHccCCcccccchHHHHHHHHhhcCCCCCcHHHHHHHhhhhHH
Q 007135          219 EESNIFNEAINFTTTHLKEYVKHNNNDDDGYLSTLVEHALELPLHWRMVRLEARWFIDMYQRGPDVNQVLVELAKLDFNA  298 (616)
Q Consensus       219 gE~~iLdeA~~fs~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~  298 (616)
                      || +|||||+.||++||++.+..    ++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+
T Consensus       167 gE-~iLdeA~~fs~~~L~~~~~~----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~  241 (554)
T 3g4d_A          167 GE-DILDEAISFTTHHLSLAVAS----LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNM  241 (554)
T ss_dssp             TC-HHHHHHHHHHHHHHHHHSTT----CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH
T ss_pred             Cc-HHHHHHHHHHHHHHHHHHhc----cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHH
Confidence            99 99999999999999998865    67889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhhhcccccCCCHHHHHH
Q 007135          299 VQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTIDDVYDVYGTLDELEL  377 (616)
Q Consensus       299 ~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~viDD~fD~yGt~eEl~~  377 (616)
                      ||++||+||++++||||++||.+ |||||||++|||||++|++|||+||.+|++|||+++|++++||+||+|||+|||+.
T Consensus       242 ~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~  321 (554)
T 3g4d_A          242 LQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIP  321 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            99999999999999999999977 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHhHh
Q 007135          378 FTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYM  457 (616)
Q Consensus       378 ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EAkW~~~g~iPtleEYl  457 (616)
                      ||+||+|||++++++||+|||+||.+|+|+++|++.++.+.+|+++++|++++|+++++||++||+|+++||+||+||||
T Consensus       322 ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl  401 (554)
T 3g4d_A          322 YTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFK  401 (554)
T ss_dssp             HHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999888788999999999999999999999999999999999999


Q ss_pred             hhccccchhhHHHHHHHHHhCCCCChHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCCccchhhhhhcCCCCHH
Q 007135          458 DNAWISVSGPVILLHAYTLIANPPTKEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASES  537 (616)
Q Consensus       458 ~~~~vS~G~~~ll~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~~n~V~cyMkE~g~SeE  537 (616)
                      +||++|+|++++++++++++|+.+|+|+++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|
T Consensus       402 ~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeE  481 (554)
T 3g4d_A          402 ANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQ  481 (554)
T ss_dssp             HHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHH
T ss_pred             hccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HHHHhhhhccccccC
Q 007135          538 DAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SKNRVLPLLVHPVSL  613 (616)
Q Consensus       538 eA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~I~~ll~~pi~~  613 (616)
                      ||++++++||+++||+||++++++++    +|++|+++++|+||+++++|++|||||.|+. ||++|++||++|||+
T Consensus       482 eA~~~i~~~Ie~~wK~lN~e~l~~~~----~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          482 EAYDVFNKHVESAWKDLNQEFLKPTE----MPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSCS----SCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999877    9999999999999999999999999999965 999999999999986
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 616
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-130
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-125
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-75
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 1e-66
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 4e-46
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 3e-32
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  383 bits (985), Expect = e-130
 Identities = 148/331 (44%), Positives = 207/331 (62%), Gaps = 7/331 (2%)

Query: 285 NQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEP 343
           N ++ ELAKL+FN +QA HQ+ELK +SRWW +    E L F RDR++E+FFWA+G     
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 344 QFGYCRRMSTKANALITTIDDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLV 403
           Q GY R+M+     L T IDD+YDVYGTLDELELFT+  +RWD  ++ +LPYYM+LC+  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 404 LHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEAKWYSSGYIPTLEEYMDNAWIS 463
           +HN  ++ A+D+LK+ G   + YL+K+  D+ +++  EAKWY SGY P+L+EY++ A IS
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 464 VSGPVILLHAYTLIANPPTKEA-LQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDVP 522
           V+ P I+   Y   AN     A +  L +Y +I+    +I RL +DL TS  E+ RGDVP
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 523 KAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARM 582
           K IQCYM ET ASE +A EH++ LI   W  MN+      P      +  +  A N+ R+
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRV 297

Query: 583 AQCTYQNGDGHTIQHKS-KNRVLPLLVHPVS 612
           AQ  Y +GDG  +QH      +  LL  P +
Sbjct: 298 AQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 328
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query616
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.94
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.24
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3.8e-97  Score=778.02  Aligned_cols=325  Identities=45%  Similarity=0.822  Sum_probs=304.8

Q ss_pred             CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhCCCC-cchhhhhhhHhHHhHhCCccCCCccchhhhhhhchhhhhhh
Q 007135          284 VNQVLVELAKLDFNAVQAEHQEELKYVSRWWRKTGLGE-LHFARDRIMENFFWALGEVWEPQFGYCRRMSTKANALITTI  362 (616)
Q Consensus       284 ~n~~lLelAKlDFn~~Q~~hq~El~~lsrWwk~~~l~~-l~faRdRlve~Yfwa~a~~feP~~s~~Rl~laK~~~li~vi  362 (616)
                      +|++||||||||||+||++||+||++++|||+++||.+ |||+|||++|||||++|++|||+||.+|++|||++++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999987 99999999999999999999999999999999999999999


Q ss_pred             hcccccCCCHHHHHHHHHHHhhccccccccCCchhHHHHHHHhhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHH
Q 007135          363 DDVYDVYGTLDELELFTNAVERWDVNAMDQLPYYMKLCFLVLHNSTNEMAFDVLKKQGVHIIPYLKKAWADMCKSFLLEA  442 (616)
Q Consensus       363 DD~fD~yGt~eEl~~ft~ai~rWD~~~~~~lPeymk~~f~aL~~~~~ei~~~~~k~~g~~~~~~lk~~w~~~~~a~l~EA  442 (616)
                      ||+||+|||+||++.||+||+|||+++++.||+|||+||.+++++++|++.++.+.+|++++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~Ea  160 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEA  160 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCHHhHhhhccccchhhHHHHHHHHHhCCCCC-hHHHHhhhhhhhHHHHHHhHHHHhcCccCchhhhhcCCC
Q 007135          443 KWYSSGYIPTLEEYMDNAWISVSGPVILLHAYTLIANPPT-KEALQFLEEYPNIIRWPSMIFRLANDLATSSDEVKRGDV  521 (616)
Q Consensus       443 kW~~~g~iPtleEYl~~~~vS~G~~~ll~~~~~~~G~~l~-~e~~e~~~~~p~l~~~~~~I~RL~NDI~S~kkE~~rGd~  521 (616)
                      +|+++||+||+||||++|.+|+|++++++++++++|..++ +++++|+.++|+++++++.|+||+|||+++++|++||++
T Consensus       161 kW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~~  240 (328)
T d1n1ba2         161 KWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV  240 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CC
T ss_pred             HHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCCc
Confidence            9999999999999999999999999999999999998765 457999999999999999999999999999999999999


Q ss_pred             ccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccHHHHHHHHHHhhhhccccccCCCCCCchh-HH
Q 007135          522 PKAIQCYMHETGASESDAREHIRDLITATWMKMNSKDGDENPDHLLLSNNFIRFAINLARMAQCTYQNGDGHTIQHK-SK  600 (616)
Q Consensus       522 ~n~V~cyMkE~g~SeEeA~~~i~~mI~~~wK~lN~e~l~~~~~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k  600 (616)
                      +|+|+|||+|+|+|+|||+++++++|+++||+||++++++++    +|++|+++++|+||+++++|++|||||.|+. ||
T Consensus       241 ~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~----vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~k  316 (328)
T d1n1ba2         241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP----FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTY  316 (328)
T ss_dssp             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCS----SCHHHHHHHHHHHHHHHHHTTTSCCC----CHHH
T ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHH
Confidence            999999999999999999999999999999999999999887    9999999999999999999999999999976 99


Q ss_pred             HHhhhhcccccc
Q 007135          601 NRVLPLLVHPVS  612 (616)
Q Consensus       601 ~~I~~ll~~pi~  612 (616)
                      +||++||++||.
T Consensus       317 ~~I~~ll~ePvs  328 (328)
T d1n1ba2         317 EHIAGLLFEPYA  328 (328)
T ss_dssp             HHHHHHHTSCCC
T ss_pred             HHHHHHhccCCC
Confidence            999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure