Citrus Sinensis ID: 007138
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 616 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRR5 | 1424 | Putative disease resistan | yes | no | 0.834 | 0.360 | 0.251 | 5e-29 | |
| Q9LRR4 | 1054 | Putative disease resistan | no | no | 0.297 | 0.173 | 0.294 | 2e-10 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.779 | 0.368 | 0.235 | 3e-10 | |
| Q7XA40 | 992 | Putative disease resistan | N/A | no | 0.602 | 0.373 | 0.267 | 2e-08 | |
| Q7XA42 | 979 | Putative disease resistan | N/A | no | 0.647 | 0.407 | 0.216 | 5e-08 | |
| P23799 | 630 | Putative adenylate cyclas | N/A | no | 0.475 | 0.465 | 0.252 | 3e-07 | |
| Q7XBQ9 | 970 | Disease resistance protei | N/A | no | 0.316 | 0.201 | 0.300 | 1e-06 | |
| Q7XA39 | 988 | Putative disease resistan | N/A | no | 0.618 | 0.385 | 0.245 | 2e-06 | |
| P26337 | 630 | Putative adenylate cyclas | N/A | no | 0.490 | 0.479 | 0.236 | 2e-06 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.422 | 0.137 | 0.273 | 8e-06 |
| >sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 170/677 (25%), Positives = 270/677 (39%), Gaps = 163/677 (24%)
Query: 11 FYG--NDSPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP 68
F+G N +PF L+ L+F M W++WI G+ FP L++L I C L+ FP
Sbjct: 828 FFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDGI--FPCLQKLIIQRCPSLRKKFP 885
Query: 69 EHLPALEMLVIEGCEELLV----------------SVASLPALCKFEI----GGCKKVVW 108
E LP+ + I C V S AS+P++ + E+ G K
Sbjct: 886 EGLPSSTEVTISDCPLRAVSGGENSFRRSLTNIPESPASIPSMSRRELSSPTGNPKSDAS 945
Query: 109 RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEI---------KNIENETYVWK 159
SA S +S D + P+ + E+ + + E +
Sbjct: 946 TSAQPGFAS-SSQSNDDNEVTSTSSLSSLPKDRQTEDFDQYETQLGSLPQQFEEPAVISA 1004
Query: 160 SHNELLQDICS-----LKRLTITSCPKLQSLV---------------------AEEEKDQ 193
++ + DI S + R ++ PK + + E +
Sbjct: 1005 RYSGYISDIPSTLSPYMSRTSLVPDPKNEGSILPGSSSYQYHQYGIKSSVPSPRSSEAIK 1064
Query: 194 QQQLCELSCRLEYLRLSN------------------CEGLVKLPQS-SLSLSSLREIEIC 234
Q + +EYL++++ C+GL LP++ + S +L E+ I
Sbjct: 1065 PSQYDDDETDMEYLKVTDISHLMELPQNLQSLHIDSCDGLTSLPENLTESYPNLHELLII 1124
Query: 235 KCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV 294
C SL SFP P+ LK ++I C L + S LE L I S +
Sbjct: 1125 ACHSLESFPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFPL 1184
Query: 295 QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPAT 354
L P L+ LSI DC++ +T ++ G+ R LE L+I CP+
Sbjct: 1185 SLFPKLRSLSIRDCESFKTFSIHAGLGDDR----IALESLEIRDCPN------------- 1227
Query: 355 LESLEVGNLP-PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLR 413
LE+ G LP P L S+ + C KL+++ E+L TSL ++ I +C ++ +P
Sbjct: 1228 LETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPG------ 1281
Query: 414 QLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIG 473
GG P + LR L IS C +L R L +L NL
Sbjct: 1282 ------------------GGFP-SNLRTLCISLCDKLT---PRIEWGLRDLENL------ 1313
Query: 474 GNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWIS 533
R+L I G ++D+ SFP E LP S+ +L IS
Sbjct: 1314 ----------------------RNLEIDGGNEDIESFPEEGL-------LPKSVFSLRIS 1344
Query: 534 RFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLIAEKCRKD 592
RF NL+ L+ D + + + + C KL+ ++ LP L L+I C L+ E +
Sbjct: 1345 RFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLP-PLSCLRISSCSLLTETFAEV 1403
Query: 593 GGQYWDLLTHIPHVVID 609
+++ +L +IP+V ID
Sbjct: 1404 ETEFFKVL-NIPYVEID 1419
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 1 MSRVKSLGSEFYGNDSPI------PFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRE 54
M ++S+G +FY +D + PF LETLRF+N+ +W++W+ +R +G + FP L++
Sbjct: 823 MVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKK 881
Query: 55 LHIISCSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDH 114
L I+ C +L GT P LP+L L I C L P ++ + + +S+ D
Sbjct: 882 LFILRCPELTGTLPTFLPSLISLHIYKCGLLDFQ----PDHHEYSYRNLQTLSIKSSCDT 937
Query: 115 LGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRL 174
L + PL L++LE+ Y + NE L+ +L+ L
Sbjct: 938 L----------------VKFPLN-HFANLDKLEVDQC-TSLYSLELSNEHLRGPNALRNL 979
Query: 175 TITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 208
I C LQ L Q Q+ +CR YLR
Sbjct: 980 RINDCQNLQLLPKLNALPQNLQVTITNCR--YLR 1011
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 141/599 (23%), Positives = 243/599 (40%), Gaps = 119/599 (19%)
Query: 51 KLRELHIISCSKLQGTFPE--HLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVW 108
KL L + C KL+ +FP +L +LE L + GC L + PA+ GC V
Sbjct: 661 KLIYLDMSDCKKLE-SFPTDLNLESLEYLNLTGCPNL----RNFPAIKM----GCSDV-- 709
Query: 109 RSATDHLGSQNSVVCRDTS-NQVFLAG-----------PLKPRIPKLEELEIKNIENETY 156
D +N +V D N+ AG P + R +L L ++ ++E
Sbjct: 710 ----DFPEGRNEIVVEDCFWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEK- 764
Query: 157 VWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELS--CRLEYLRLSNCEG 214
+W E +Q + SL+ + ++ E + ++ +LS +LE L L+NC+
Sbjct: 765 LW----EGIQSLGSLEGMDLS------------ESENLTEIPDLSKATKLESLILNNCKS 808
Query: 215 LVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPE-----AW 269
LV LP + +L L +E+ +C+ L P S L+ + +S C +L+S P W
Sbjct: 809 LVTLPSTIGNLHRLVRLEMKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISTNIVW 868
Query: 270 MCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSC 329
+ N+++E + + + L +L + C + L + + S
Sbjct: 869 LYLENTAIEEIP----------STIGNLHRLVRLEMKKCTGLEVLPTDVNLSS------- 911
Query: 330 LLEHLDISSCPSLTC--IFSKNELPATLESLEVGNLP-----PSLKSLYVYGCSKLESIA 382
LE LD+S C SL + S++ LE+ + +P +LK+L + C L ++
Sbjct: 912 -LETLDLSGCSSLRSFPLISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLP 970
Query: 383 ERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP--EGGLPCAKLR 440
+ N L + ++ C L++LP + NL L + + C +L +FP + L
Sbjct: 971 TTIGNLQKLVSFEMKECTGLEVLPIDV-NLSSLMILDLSGCSSLRTFPLISTNIVWLYLE 1029
Query: 441 RLDISDCKRLEGGFHRYM-IALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLT 499
I + G HR + + + T L L N+ SSL L
Sbjct: 1030 NTAIEEIPSTIGNLHRLVKLEMKECTGLEVLPTDVNL----------------SSLMILD 1073
Query: 500 IRGCDDDMVSFPLEDKRL------GTAL-PLP------ASLTTLWISRFPNLERLSSSIV 546
+ GC + +FPL R+ TA+ +P LT L + L+ +S +I
Sbjct: 1074 LSGC-SSLRTFPLISTRIECLYLQNTAIEEVPCCIEDFTRLTVLMMYCCQRLKTISPNIF 1132
Query: 547 DLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLIAEKCRKDGGQY-WDLLTHIP 604
L L +C + + ++ + C PL + +Y WD L H+P
Sbjct: 1133 RLTRLELADFTDCRGVIKALSDATVVATMEDHVSCVPL------SENIEYIWDKLYHLP 1185
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Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 123/459 (26%), Positives = 194/459 (42%), Gaps = 88/459 (19%)
Query: 195 QQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNI 254
++LC+L L+ L L NC+ L LP+ + L SLR + + C P + L + LK +
Sbjct: 575 KRLCKLQ-NLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKTL 633
Query: 255 WISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTL 314
K L L++ G S+T++ V+ K+ ++S N+ +L
Sbjct: 634 GYFVVGERKGYQLG-------ELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSL 686
Query: 315 TVEEGIQSSRRYTS--------------------------CLLEHLD-----------IS 337
++ RY S CL + ++ IS
Sbjct: 687 SM--SWDRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILIS 744
Query: 338 SCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIE 397
C + +C+ ELP LESLE+ + S++ YV L SL + I
Sbjct: 745 GCENCSCLPPFGELPC-LESLELQD--GSVEVEYVEDSGFLTR-----RRFPSLRKLHIG 796
Query: 398 RCGNLKILP--SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI---SDCKRLEG 452
NLK L G L+ +KI +C V FP + +++L+I +D G
Sbjct: 797 GFCNLKGLQRMKGAEQFPVLEEMKISDCPMFV-FP----TLSSVKKLEIWGEADA----G 847
Query: 453 GFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPL 512
G + ++ NL+ L SL I N + S++E F +L +L+ VSF
Sbjct: 848 G----LSSISNLSTLTSLKIFSNHTV-TSLLEEM--FKNLENLIYLS--------VSFLE 892
Query: 513 EDKRLGTALPLPASLTTLWISRFPNLERL-SSSIVDLQNLTELVLVNCPKLKYFPEKGLP 571
K L T+L +L L I LE L + L +LTEL + +C LK PE GL
Sbjct: 893 NLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPE-GLQ 951
Query: 572 --SSLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVI 608
++L L+I CP + ++C K G+ W ++HIP+V I
Sbjct: 952 HLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNI 990
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 103/475 (21%), Positives = 196/475 (41%), Gaps = 76/475 (16%)
Query: 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLS 226
D+ L+ L ++ ++++L ++LC+L L+ L L C+ L LP+ + L
Sbjct: 546 DLVHLRYLDLSGNFRIRNL--------PKRLCKLQ-NLQTLDLHYCDSLSCLPKQTSKLG 596
Query: 227 SLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR 286
SLR + + CS + P + L + LK++ +C + + + L+ L+++G
Sbjct: 597 SLRNLLLDGCSLTSTPPRIGLLTCLKSL---SCFVIGKRKGHQLGE----LKNLNLYGSI 649
Query: 287 SLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI- 345
S+T + V+ K+ ++S N+ +L + + RY S +LE L S I
Sbjct: 650 SITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEALKPHSNLKYLEIN 709
Query: 346 -FSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIER-CGNLK 403
F LP + + N+ S+ + GC + LE++ + +++
Sbjct: 710 GFGGIRLPDWMNQSVLKNVV----SIRIRGCENCSCLPP-FGELPCLESLELHTGSADVE 764
Query: 404 ILPSGLHNLR--QLQGIKIWNCGNLVSF--PEGGLPCAKLRRLDISDCKRLEGGFHRYMI 459
+ +H R L+ + IW+ NL EG L + C M
Sbjct: 765 YVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCP---------MF 815
Query: 460 ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGT 519
+ L+++ +L K ++ S+LR LT D++ + L ++ +
Sbjct: 816 VIPTLSSVKTL---------KVIVTDATVLRSISNLRALTSLDISDNVEATSLPEEMFKS 866
Query: 520 ALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLP--SSLLQL 577
A+L L IS F NL+ L +S+ L L L C L+ PE+G+ +SL +L
Sbjct: 867 L----ANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTEL 922
Query: 578 QI------------------------YCCPLIAEKCRKDGGQYWDLLTHIPHVVI 608
+ CP++ ++C + G+ W + HIP++ +
Sbjct: 923 SVSNCMMLKCLPEGLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIAHIPYLTL 977
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Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 153/372 (41%), Gaps = 79/372 (21%)
Query: 171 LKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLRE 230
LK L I+SC ++ L A LE L LS C + K + S+LRE
Sbjct: 256 LKMLDISSCHEITDLTAIGGVRS----------LEKLSLSGCWNVTKGLEELCKFSNLRE 305
Query: 231 IEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTY 290
++I C L S + LK + +S C K L + +LE L++ GC ++
Sbjct: 306 LDISGCLVLGSAVVLKNLINLKVLSVSNCKNFKDLNGL---ERLVNLEKLNLSGCHGVSS 362
Query: 291 IAAVQLPPSLKQLSISDCDNIRTLTVEEGIQ-----------SSRRYTSC-------LLE 332
+ V +LK+L IS C+ +L +G+Q + +T+ +
Sbjct: 363 LGFVANLSNLKELDISGCE---SLVCFDGLQDLNNLEVLYLRDVKSFTNVGAIKNLSKMR 419
Query: 333 HLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLE 392
LD+S C +T + + LE+L+ L+ L + GC ++ S + + + L
Sbjct: 420 ELDLSGCERITSL-------SGLETLK------GLEELSLEGCGEIMSF-DPIWSLYHLR 465
Query: 393 TISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRR---LDISDCKR 449
+ + CGNL+ L SGL L L+ + + C +F P LR L++S C+
Sbjct: 466 VLYVSECGNLEDL-SGLQCLTGLEEMYLHGCRKCTNFG----PIWNLRNVCVLELSCCEN 520
Query: 450 LEGGFHRYMIALHNLTNLHSLYIGGNMEI------------------WKSMIERGRGFHR 491
L+ + L LT L LY+ G EI W + ++ G R
Sbjct: 521 LDD-----LSGLQCLTGLEELYLIGCEEITTIGVVGNLRNLKCLSTCWCANLKELGGLER 575
Query: 492 FSSLRHLTIRGC 503
+L L + GC
Sbjct: 576 LVNLEKLDLSGC 587
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May be involved in the postranscriptional regulation of genes in VSG expression sites. Trypanosoma brucei brucei (taxid: 5702) |
| >sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 109/243 (44%), Gaps = 48/243 (19%)
Query: 277 LEILSIH-GCRSLTYIAAVQLP-----------PSLKQLSISDCDNIRTLTVEEGIQSSR 324
LE L +H G + Y+ V + PSL++L I D +++ L +EG +
Sbjct: 755 LESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFP 814
Query: 325 RYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAER 384
+LE + I CP LT L + L +L SL+ Y + E
Sbjct: 815 -----VLEEMIIHECPFLT-------LSSNLRAL------TSLRICYNKVATSFPE--EM 854
Query: 385 LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLP-CAKLRRLD 443
N +L+ ++I RC NLK LP+ L +L L+ +KI C L S PE GL + L L
Sbjct: 855 FKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELF 914
Query: 444 ISDCKRL----EGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG--FHRFSSLRH 497
+ C L EG L +LT L SL I G ++ K E+G G +H+ S + +
Sbjct: 915 VEHCNMLKCLPEG--------LQHLTTLTSLKIRGCPQLIKR-CEKGIGEDWHKISHIPN 965
Query: 498 LTI 500
+ I
Sbjct: 966 VNI 968
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans. Solanum bulbocastanum (taxid: 147425) |
| >sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 123/501 (24%), Positives = 200/501 (39%), Gaps = 120/501 (23%)
Query: 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLS 226
D+ L+ L + SC +SL ++LC+L L+ L + NC L LP+ + LS
Sbjct: 548 DLLHLRYLDL-SCNNFRSL--------PERLCKLQ-NLQTLDVHNCYSLNCLPKQTSKLS 597
Query: 227 SLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTN--SSLEILSIHG 284
SLR + + C + P + L + LK + + K + + N S+ I +
Sbjct: 598 SLRHLVVDGCPLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLNLCGSISITHLER 657
Query: 285 CRSLTYIAA-VQLPPSLKQLSIS-DCD--------------------NIRTLTVEE--GI 320
++ T A + +L+ LS+S D D N++ L + G
Sbjct: 658 VKNDTDAEANLSAKANLQSLSMSWDNDGPNRYESKEVKVLEALKPHPNLKYLEIIAFGGF 717
Query: 321 QSSRRYTSCLLEHL---DISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 377
+ +LE + I SC + C+ ELP LE+LE+ N G ++
Sbjct: 718 RFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPC-LENLELQN-----------GSAE 765
Query: 378 LESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF--PEGGLP 435
+E + E D+ S R + PS L+ ++IW +L EG
Sbjct: 766 VEYVEE--DDVHS-------RFSTRRSFPS-------LKKLRIWFFRSLKGLMKEEGEEK 809
Query: 436 CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495
L + I C + L+++ L + GN RG S+L
Sbjct: 810 FPMLEEMAILYCP---------LFVFPTLSSVKKLEVHGNTNT--------RGLSSISNL 852
Query: 496 RHLT-IR-GCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTE 553
LT +R G + S P E + T+L +L L F NL+ L +S+ L L
Sbjct: 853 STLTSLRIGANYRATSLPEE---MFTSL---TNLEFLSFFDFKNLKDLPTSLTSLNALKR 906
Query: 554 LVLVNCPKLKYFPEKGLP--SSLLQLQI-YC-----------------------CPLIAE 587
L + +C L+ FPE+GL +SL QL + YC CP + +
Sbjct: 907 LQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTALTNLGVSGCPEVEK 966
Query: 588 KCRKDGGQYWDLLTHIPHVVI 608
+C K+ G+ W + HIP++ I
Sbjct: 967 RCDKEIGEDWHKIAHIPNLDI 987
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Solanum bulbocastanum (taxid: 147425) |
| >sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 156/397 (39%), Gaps = 95/397 (23%)
Query: 204 LEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALK 263
LE L LS C + K + S+LRE++I C L S LKN+
Sbjct: 279 LEKLSLSGCWNVTKGLEELCKFSNLRELDISGCLVLGS------AVVLKNLI-------- 324
Query: 264 SLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSS 323
+L++LS+ C++ + ++ +L +L++S C + +L + +
Sbjct: 325 ------------NLKVLSVSNCKNFKDLNGLERLVNLDKLNLSGCHGVSSLGFVANLSN- 371
Query: 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAE 383
L+ LDIS C SL C +L +L+ LY+ ++
Sbjct: 372 -------LKELDISGCESLVCFDGLQDL-------------NNLEVLYLRDVKSFTNVGA 411
Query: 384 RLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF-PEGGLPCAKLRRL 442
+ N + + + + C + L SGL L+ L+ + + CG ++SF P L LR L
Sbjct: 412 -IKNLSKMRELDLSGCERITSL-SGLETLKGLEELSLEGCGEIMSFDPIWSLH--HLRVL 467
Query: 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNME------IWK------------SMIE 484
+S+C LE + L +T L LY+ G + IW +E
Sbjct: 468 YVSECGNLED-----LSGLEGITGLEELYLHGCRKCTNFGPIWNLRNVCVVELSCCENLE 522
Query: 485 RGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP--ASLTTLW---------IS 533
G + L L + GC+ E +G L L+T W +
Sbjct: 523 DLSGLQCLTGLEELYLIGCE--------EITPIGVVGNLRNLKCLSTCWCANLKELGGLD 574
Query: 534 RFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKG 569
R NLE+L S L + + L++ PKL++F G
Sbjct: 575 RLVNLEKLDLSGCCGLSSSVFMELMSLPKLQWFYGFG 611
|
May be involved in the postranscriptional regulation of genes in VSG expression sites. Trypanosoma equiperdum (taxid: 5694) |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 124/296 (41%), Gaps = 36/296 (12%)
Query: 192 DQQQQLCELSCRLEYLRL----SNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVAL 247
D + E C L L+L + + V PQ L S + + L S P+
Sbjct: 1166 DANPNVFEKMCNLRLLKLYCSKAEEKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFN 1225
Query: 248 PSKLK--NIWISTCDALKSLPEAWMCDTNSSLEILS---IHGCRSLTYIAAVQLPPSLKQ 302
P L N+ S L +A C TNSSLE L + LT I + +L+
Sbjct: 1226 PENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEH 1285
Query: 303 LSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEV-- 360
+ + C+++ +L+ L L++ C L I S LESLEV
Sbjct: 1286 IDLEGCNSLLSLSQSISYLKK-------LVFLNLKGCSKLENIPSM----VDLESLEVLN 1334
Query: 361 -------GNLP---PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLH 410
GN P P++K LY+ G + ++ I + N LE + +E +LK LP+ ++
Sbjct: 1335 LSGCSKLGNFPEISPNVKELYM-GGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIY 1393
Query: 411 NLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDIS--DCKRLEGGFHRYMIALHNL 464
L+ L+ + + C +L FP+ LR LD+S D K L Y+ AL L
Sbjct: 1394 KLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSIS-YLTALDEL 1448
|
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 616 | ||||||
| 400131587 | 1388 | FB_MR5 [Malus x robusta] | 0.905 | 0.402 | 0.380 | 3e-79 | |
| 225449649 | 1418 | PREDICTED: putative disease resistance p | 0.897 | 0.389 | 0.361 | 4e-73 | |
| 284026888 | 1424 | CC-NBS-LRR protein [Quercus suber] | 0.912 | 0.394 | 0.352 | 4e-73 | |
| 356554923 | 1399 | PREDICTED: putative disease resistance R | 0.884 | 0.389 | 0.350 | 8e-73 | |
| 45826061 | 739 | resistance protein [Quercus suber] | 0.892 | 0.744 | 0.356 | 4e-71 | |
| 224132254 | 552 | predicted protein [Populus trichocarpa] | 0.797 | 0.889 | 0.386 | 4e-71 | |
| 296085123 | 1278 | unnamed protein product [Vitis vinifera] | 0.884 | 0.426 | 0.336 | 1e-69 | |
| 224059584 | 1418 | cc-nbs-lrr resistance protein [Populus t | 0.907 | 0.394 | 0.340 | 1e-67 | |
| 225450023 | 1396 | PREDICTED: putative disease resistance p | 0.887 | 0.391 | 0.338 | 2e-64 | |
| 147766392 | 1471 | hypothetical protein VITISV_007674 [Viti | 0.883 | 0.369 | 0.331 | 4e-64 |
| >gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 238/625 (38%), Positives = 331/625 (52%), Gaps = 67/625 (10%)
Query: 1 MSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISC 60
M+ V+S+G+EFYG + +PFP LETL F +MQ W+ W+P ++ FP L+ L + C
Sbjct: 819 MNAVESVGAEFYG-ECSLPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKC 877
Query: 61 SKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNS 120
SKL+G PE+L +L L I CEELLVS+A+ L + I GCK VV +A S
Sbjct: 878 SKLEGKLPENLDSLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFELLES 937
Query: 121 VVCRDTSNQVFL-AGPL-KPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITS 178
+ + S L G L + + + +L+I E T K+ LLQ + SL RL I
Sbjct: 938 LYLSNISELTSLQTGELCRNGLNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIED 997
Query: 179 CPKLQSLVAEE---EKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICK 235
SL+ EE E D+ QL L C+LE+L+L C+ L+KLP+ LSSL+E+ I +
Sbjct: 998 ----NSLLVEELGKEADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHE 1053
Query: 236 CSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQ 295
CSSLVSFP+V LP LK+I I+ C SL Y A Q
Sbjct: 1054 CSSLVSFPDVGLPPSLKDIEITE--------------------------CHSLIYFAKSQ 1087
Query: 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355
+P +L+++ I DC ++R+L E + S + LE+L+I C SLT + ++L L
Sbjct: 1088 IPQNLRRIQIRDCRSLRSLVDNEAVGSCSSSSHNCLEYLNIERCQSLTLLSLSDQLVRAL 1147
Query: 356 ESLEVGNLPPSLKSLYVYGCSKLESIAER--LDNNTS--LETISIERCGNLKILP--SGL 409
L+ +Y C +LE +A NNT+ LE I RC NLK LP SG
Sbjct: 1148 RELD------------IYDCEQLEFLAPDGLFCNNTNYFLENFRIRRCQNLKSLPRLSGG 1195
Query: 410 HNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHS 469
L+ I+I +C L + PE L +L I + L F NL S
Sbjct: 1196 IRGSNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYREGLTCSFP---------ANLTS 1246
Query: 470 LYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTT 529
L I ++ KS+ E G HR +SLR+L I G D DMVSFP + R+ T LP SLT
Sbjct: 1247 LMI-WKVKSCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVRMETL--LPKSLTE 1303
Query: 530 LWISRFPNLERLSSSIVD-LQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLIAEK 588
L I FPNL++LSS L +L L L +CPKL P++GLP SL +L IY CP++ E+
Sbjct: 1304 LSIGGFPNLKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKER 1363
Query: 589 CRKDGGQYWDLLTHIPHVVIDDKRV 613
C+ G+YW ++HIP++ ID K +
Sbjct: 1364 CQPGKGRYWHKISHIPYIDIDWKMI 1388
|
Source: Malus x robusta Species: Malus x robusta Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 233/645 (36%), Positives = 331/645 (51%), Gaps = 92/645 (14%)
Query: 1 MSRVKSLGSEFYGNDS--PIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHII 58
M VKS+G EFYG S PFP LE LRFE+M EWE+W E +P+LREL I
Sbjct: 830 MQGVKSVGIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWC------SSESYPRLRELEIH 883
Query: 59 SCSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQ 118
C KL P HLP+L L I C +L+ + SLP L + C + + RS D L S
Sbjct: 884 HCPKLIQKLPSHLPSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSGGD-LTSL 942
Query: 119 NSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITS 178
++ + SN FL L + LE LEI N ++ +S +++ ++ L I
Sbjct: 943 ITLRLENISNLTFLNEGLVRFLGALEVLEICNCSELKFLLQS-GVGFENLSCIRHLVIVM 1001
Query: 179 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSS 238
CPKL L+AE++ L C LEYL ++ C L KLP SL+SLRE+ I KC
Sbjct: 1002 CPKL-VLLAEDQP--------LPCNLEYLEINKCASLEKLPIGLQSLTSLRELSIQKCPK 1052
Query: 239 LVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSS----LEILSIHGCRSLTYIAAV 294
L S E+ P L ++ + C+ L+SLP+ M + + LE L I C SL
Sbjct: 1053 LCSLAEMDFPPMLISLELYDCEGLESLPDGMMINGENRNFCLLECLKIVHCPSLICFPRG 1112
Query: 295 QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPAT 354
+LP LK+L I DC +++L EG+ +C LE L I CP L+ F + LP+T
Sbjct: 1113 ELPSKLKELEIIDCAKLQSLP--EGLILGDH--TCHLEFLRIHRCPLLSS-FPRGLLPST 1167
Query: 355 LESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSG-LHNLR 413
++ LE+ N C +LESI+ L ++T+LE + I+R LKI SG LH+L+
Sbjct: 1168 MKRLEIRN------------CKQLESIS-LLSHSTTLEYLRIDR---LKINFSGCLHSLK 1211
Query: 414 QLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYI- 472
L + I++C L SFPE G L+ L I DCK L+ + + + T+L L I
Sbjct: 1212 HLIELHIYSCSGLESFPERGFSSPNLKMLHIDDCKNLKS----LPLQMQSFTSLRDLRIY 1267
Query: 473 -----------GGNMEIWKSMIERGR---------GFHRFSSLRHLTIRG----CDDDMV 508
G ++ + I + G H +SL+ I CD D
Sbjct: 1268 DCPNLVSFAEEGLSLNLTSFWIRNCKNLKMPLYQWGLHGLTSLQTFVINNVAPFCDHD-- 1325
Query: 509 SFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLV---NCPKLKYF 565
S PL LP +LT L IS+F NLE LSS + LQNLT L ++ +CPKL+ F
Sbjct: 1326 SLPL----------LPRTLTYLSISKFHNLESLSS--MGLQNLTSLEILEIYSCPKLQTF 1373
Query: 566 -PEKGLPSSLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVID 609
P++GL ++L L+I CP+I +CRK+ G+ W +++HIP + +D
Sbjct: 1374 LPKEGLSATLSNLRIKFCPIIEARCRKNKGEDWPMISHIPRIDMD 1418
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 226/641 (35%), Positives = 321/641 (50%), Gaps = 79/641 (12%)
Query: 1 MSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSGQGV-EWFPKLRELHIIS 59
M+ VKS+G EFYG PF LETL FE+M W +WIPL GV E F L +L II
Sbjct: 820 MAGVKSVGREFYGESCSRPFQSLETLHFEDMPRWVNWIPL----GVNEAFACLHKLSIIR 875
Query: 60 CSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQN 119
C L P+HLP+L+ LVI GC ++VSV++LP LC I GCK+V S+ GS
Sbjct: 876 CHNLVRKLPDHLPSLKKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVG-FGSPY 934
Query: 120 SVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSC 179
S+ S L + K+E L+I + E T +W+ E L + L+ L+I C
Sbjct: 935 SMAFSKISEFGNATAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDC 994
Query: 180 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK-LPQSSLSL---SSLREIEICK 235
P L S A L+ +++ +C GL LP+ +L + L + + +
Sbjct: 995 PTLVSFPAS----------GFPSMLKVIQIKSCSGLKSLLPEGTLHSRENACLERLCVVR 1044
Query: 236 CSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQ 295
C S+ S LP+ LK + IS C L+ + + ++SS RS T+
Sbjct: 1045 CDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDINNRSKTH----- 1099
Query: 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355
L+ L I C ++ TLT + ++ L HL + CP L C+ S +LPA L
Sbjct: 1100 ----LQYLDIKSCPSLTTLTSSGKLPAT-------LTHLLLRECPKLMCLSSTGKLPAAL 1148
Query: 356 ESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL 415
+ LE+ ++ SKL+ IAERL NTSLE I I C LK LP LHNL +L
Sbjct: 1149 QYLEIQSI------------SKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKL 1196
Query: 416 QGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIG-- 473
+ I+ C + SFP GLP + LR L I +CK L+ + + NLT+L L I
Sbjct: 1197 RQFLIFWCQSFSSFPAAGLP-SNLRVLGIKNCKNLKALPN----GMRNLTSLQKLDISHR 1251
Query: 474 --------------------GNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLE 513
+++ +K M E G + +SL L+I G D+ S+P E
Sbjct: 1252 LDSLPSPQEGLPTNLIELNMHDLKFYKPMFE--WGLQQPTSLIKLSIHGECLDVDSYPGE 1309
Query: 514 DKRLGTALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKGLPS 572
+ G + LP SL+ L IS F NLE LS +L +L +L + NC KL P++GLP
Sbjct: 1310 REN-GVMMLLPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLPP 1368
Query: 573 SLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRV 613
SL QL+I CPL+++ C + GQ W + HIP V+ID+K +
Sbjct: 1369 SLTQLEIRNCPLLSQHCNNEKGQEWSKIAHIPCVLIDNKFI 1409
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 225/642 (35%), Positives = 323/642 (50%), Gaps = 97/642 (15%)
Query: 1 MSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISC 60
M V + EF GN PFP LE L F +M++WE+W + + + F L++L I+ C
Sbjct: 821 MKEVCCIDGEFCGNACLRPFPSLERLYFMDMEKWENWFLSDNNEQNDMFSSLQQLFIVKC 880
Query: 61 SKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNS 120
KL G PE+LP+L+ ++++ CE+LLV+++SLP L K EI GCK +V A + S NS
Sbjct: 881 PKLLGKLPENLPSLKHVIVKECEQLLVTISSLPVLYKLEIEGCKGLVLNCANE-FNSLNS 939
Query: 121 VVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCP 180
+ FL L +EEL+I + C+L
Sbjct: 940 MSVSRILEFTFLMERLVQAFKTVEELKIVS------------------CALDETV----- 976
Query: 181 KLQSLVAEE---EKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLRE-IEICKC 236
L L E EK+ LS L + + NC + +P+ + S E + IC C
Sbjct: 977 -LNDLWVNEVWLEKNPHG----LSSILRLIEIRNCNIMKSIPKVLMVNSHFLERLYICHC 1031
Query: 237 SSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSL--EILSIHGCRSLTYIAAV 294
S+V LP LK++ IS C L+ L + C ++S + + HG ++++ V
Sbjct: 1032 DSIVFVTMDQLPHSLKSLEISNCKNLRCLLDNGTCTSSSIIMHDDNVQHGSTIISHLEYV 1091
Query: 295 QLP--PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELP 352
+ PSL +S R+ + E ++ HL I +C L+C+ K +LP
Sbjct: 1092 YIGWCPSLTCIS-------RSGELPESVK-----------HLFIWNCSELSCLSMKGQLP 1133
Query: 353 ATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNL 412
++E LE+ + C KLESIA RL NTSLE+I I C NLK LP GLH L
Sbjct: 1134 KSIERLEIQS------------CPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFL 1181
Query: 413 RQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDC----------------KRLEGGF-- 454
L+ IKI C NLVSFPE GLP + L L I C K LE G+
Sbjct: 1182 VNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIGYCP 1241
Query: 455 -HRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLE 513
+Y ++ NL SL+I + ++M G ++ S LR LTI G + + PLE
Sbjct: 1242 SIQYFPEINFPDNLTSLWINDH-NACEAMF--NWGLYKLSFLRDLTIIGGN---LFMPLE 1295
Query: 514 DKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGLPS 572
+LGT LP++LT+L + FP+LE LSS L +L++L + NCPKL PEKGLPS
Sbjct: 1296 --KLGTM--LPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPS 1351
Query: 573 SLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRVF 614
SLL+L I CP + E+CRKD G+ W + +P+V ID K ++
Sbjct: 1352 SLLELYIQDCPFLKEQCRKDKGRDWLKIADVPYVEIDGKFIY 1393
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|45826061|gb|AAS77675.1| resistance protein [Quercus suber] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 225/631 (35%), Positives = 315/631 (49%), Gaps = 81/631 (12%)
Query: 1 MSRVKSLGSEFYGNDSPIPFPCLETLRFENMQEWEDWIPLRSGQGV-EWFPKLRELHIIS 59
M+ VKS+G EFYG PF LETL FENM WE WIPL GV E F LR+L II
Sbjct: 161 MAGVKSVGREFYGESCSRPFQSLETLHFENMPRWEKWIPL----GVSEAFACLRKLSIIR 216
Query: 60 CSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQN 119
C L P+HLP+L+ LVI GC L+VSV++LP LC I G K+V S+ GS
Sbjct: 217 CHNLVRKLPDHLPSLKKLVIHGCWNLVVSVSNLPMLCVLAIEGYKRVECESSVG-FGSPY 275
Query: 120 SVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSC 179
S+V S + L + K+E L+I + E T +W+ E L + L+ L+I C
Sbjct: 276 SMVFSKISEFGHVTAGLMHGVSKVEYLKIVDSEKLTTLWEKIPEGLHRLKFLRELSIEDC 335
Query: 180 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK-LPQSSLSL---SSLREIEICK 235
P L S A L+ +++ +C GL LP+ +L + L + + +
Sbjct: 336 PTLVSFPAS----------GFPSMLKVIQIKSCSGLKSLLPEGTLHSRENACLVRLCVVR 385
Query: 236 CSSLVSFPEVALPSKLKNIWISTCDALK-SLPEAWMCDTNSSLEILSIHGCRSLTYIAAV 294
C S+ S LP+ LK + IS C L+ +L E ++S + I+ RS T+
Sbjct: 386 CDSMKSIARGQLPTTLKRLEISHCMNLQCALDEGEGSSSSSVMHDEDINN-RSKTH---- 440
Query: 295 QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPAT 354
L+ L I C ++ TLT + ++ L HL + CP L C+ S +LPA
Sbjct: 441 -----LQYLDIKSCPSLTTLTSSGKLPAT-------LTHLLLRECPKLMCLSSTGKLPAA 488
Query: 355 LESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQ 414
L+ LE+ ++P KL+ IAERL NT LE I I C LK LP LHNL +
Sbjct: 489 LQYLEIQSIP------------KLQKIAERLHQNTFLECIKIWNCHGLKSLPEDLHNLSK 536
Query: 415 LQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGG 474
L+ +I C + SFP GLP + R L I +CK L+ + + NLT+L L I
Sbjct: 537 LRQFQIVWCTSFSSFPAAGLP-SNPRVLGIKNCKNLKALPN----GMRNLTSLQKLDISN 591
Query: 475 ----------------------NMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPL 512
+++ +K M E G + +SL L+I G D+ SFP
Sbjct: 592 RLDSLPSPQEGLPTNLIELNMIDLKFYKPMFE--WGLQQLTSLIKLSIHGECLDVDSFPG 649
Query: 513 EDKRLGTALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKGLP 571
E + G + LP SL+ L IS F NLE LS +L +L +L + NC KL P++GLP
Sbjct: 650 EREN-GAMMLLPNSLSILCISYFQNLECLSPKGFQNLTSLNQLKIYNCLKLTSLPKEGLP 708
Query: 572 SSLLQLQIYCCPLIAEKCRKDGGQYWDLLTH 602
SL QL+I CPL+++ C + GQ W + H
Sbjct: 709 PSLTQLEIRNCPLLSQHCNNEKGQEWSKIAH 739
|
Source: Quercus suber Species: Quercus suber Genus: Quercus Family: Fagaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132254|ref|XP_002328223.1| predicted protein [Populus trichocarpa] gi|222837738|gb|EEE76103.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 217/562 (38%), Positives = 290/562 (51%), Gaps = 71/562 (12%)
Query: 100 IGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWK 159
I GCK+VV+ +L S NS+ + S +LA + +++ELEI N T +++
Sbjct: 3 INGCKEVVYEGGV-YLRSLNSMTISNISKLTYLAEGFIQPLAEVQELEIANCMELTSLYE 61
Query: 160 SHNELLQDICSLKRLTITSCPKLQSLV-AEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218
+ L + + SL +L + +CP++ SL+ E QQQL +C+LE L S CE L KL
Sbjct: 62 NGVALAKQLTSLLKLEVRNCPQVVSLMEGEVPVYMQQQLA--NCKLESLTFSTCESLKKL 119
Query: 219 PQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEA----WMCDTN 274
PQ SL SL+E++I C L+SFPE LPS L+ I I C+AL LP A MC
Sbjct: 120 PQWVHSLVSLKELKIQYCPRLLSFPEAGLPSTLRIIEIVGCNALTPLPAAVTYNMMC--- 176
Query: 275 SSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRY---TSC-- 329
LE L I C SL +QLPP+LK+L I C+N+ L + SS++ TSC
Sbjct: 177 --LEQLRIENCESLISFGRIQLPPTLKKLEIRYCENLLCLLDDGEGSSSKKSDENTSCSG 234
Query: 330 ----LLEHLDISSCPSLTCIFSKNELPATLESLEV------------GNLPPSLKSLYVY 373
LLE+L + C SLT I ELP+ L+ L+V LP LK L +
Sbjct: 235 NNSSLLEYLYVGICNSLTSI---GELPSALKYLQVCSCSKLKSLSSRDKLPAGLKHLAID 291
Query: 374 GCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG 433
C LES+ +R +N SLE + I C NL+ LP GLH L L+ I IW C LVSF G
Sbjct: 292 SCENLESMPDRFQDNMSLENLKIWFCFNLRSLPEGLHKLCHLREISIWYCPALVSFAAEG 351
Query: 434 LPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGR------ 487
LP LRRL I C G +HNL +L L I +I S E G
Sbjct: 352 LP-INLRRLFIIKCD----GLKAIPDHMHNLMSLEELSIYYCPDI-VSFPEEGFPTSLTY 405
Query: 488 ---------------GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWI 532
G H+ S+LR L I+G +SFP D + LP++L L I
Sbjct: 406 LATVDLKICELLFNWGMHKLSALRTLIIQG-GFSHISFPSVD----MGVRLPSALNRLSI 460
Query: 533 SRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLIAEKCRK 591
FPNLE LS S +L +L L + +CPKL FP KGLPSSLL+L+I CPL+ ++ K
Sbjct: 461 EDFPNLEYLSYSGFQNLSSLERLSISDCPKLTSFPGKGLPSSLLELRIRACPLLVQQI-K 519
Query: 592 DGGQYWDLLTHIPHVVIDDKRV 613
+ W + HIP++ ID K V
Sbjct: 520 GRVKEWLKIRHIPYINIDGKVV 541
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085123|emb|CBI28618.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 209/621 (33%), Positives = 313/621 (50%), Gaps = 76/621 (12%)
Query: 1 MSRVKSLGSEFYGND--SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHII 58
M +K +G +FYG+D S PF LETL+FEN++EWE+W G GVE FP LREL I
Sbjct: 716 MDGIKHVGPQFYGDDYSSIDPFQSLETLKFENIEEWEEWSSFGDG-GVEGFPCLRELSIF 774
Query: 59 SCSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQ 118
C KL P +LP+LE + I+ CE+L V + L L ++ G + + D
Sbjct: 775 KCPKLTSKLPNYLPSLEGVWIDDCEKLAV-LPKLVKLLNLDLLGSNVEILGTMVDLRSLT 833
Query: 119 NSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNEL-LQDICSLKRLTIT 177
+ + ++ ++F G ++ + KLEEL+I N + V S+ +L L + SL+RLTI+
Sbjct: 834 FLQINQISTLKIFPEGFMQ-QSAKLEELKIVNCGD--LVALSNQQLGLAHLASLRRLTIS 890
Query: 178 SCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCS 237
CPKL +L E K + RLE L + +C L KLP L SL E+ + C
Sbjct: 891 GCPKLVALPDEVNK--------MPPRLESLDIKDCHNLEKLPDELFKLESLSELRVEGCQ 942
Query: 238 SLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP 297
L SFP++ LPSKLK + I C A+K++ + + +N+SLE L I C SL + +P
Sbjct: 943 KLESFPDMGLPSKLKRLVIQNCGAMKAIQDGNL-RSNTSLEFLEIRSCSSLVSVLEGGIP 1001
Query: 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357
+LK + IS C ++++L VE LE+L+I +C SL F ELP +L+
Sbjct: 1002 TTLKYMRISYCKSLKSLPVE------MMNNDMSLEYLEIEACASLLS-FPVGELPKSLKR 1054
Query: 358 LEV---GNLPPS---------LKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405
LE+ GN L L++ C LE +L ++I C LK L
Sbjct: 1055 LEISICGNFLSLPSSLLNLVHLDFLHLENCPLLEYFPNTGLPTPNLRKLTIATCKKLKFL 1114
Query: 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465
P+ HNL+ LQ + + C +LVS P+ GLP L L+I+ C++L
Sbjct: 1115 PNRFHNLKSLQKLALSRCPSLVSLPKQGLP-TNLISLEITRCEKL--------------- 1158
Query: 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPA 525
++ WK H+ ++LR G +VSF LP
Sbjct: 1159 --------NPIDEWK--------LHKLTTLRTFLFEGI-PGLVSF-------SNTYLLPD 1194
Query: 526 SLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLI 585
S+T L I P+L +S + +L +L L + +C KL+ P++GLP++L L I CPLI
Sbjct: 1195 SITFLHIQELPDLLSISEGLQNLTSLETLKIRDCHKLQALPKEGLPATLSSLTIKNCPLI 1254
Query: 586 AEKCRKDGGQYWDLLTHIPHV 606
+C++D G+ W + IP+V
Sbjct: 1255 QSRCKQDTGEDWSKIMDIPNV 1275
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 218/640 (34%), Positives = 314/640 (49%), Gaps = 81/640 (12%)
Query: 1 MSRVKSLGSEFYGNDSPI-PFPCLETLRFENMQEWEDWIPLR-SGQGVEWFPKLRELHII 58
+ V+++G EFYG+ S + PFP L+TL FE+MQEW+ W + G+ E FP L EL +
Sbjct: 826 LDAVETVGHEFYGDCSSVKPFPSLKTLTFEDMQEWKSWSAVGVDGEAEEQFPSLSELTLW 885
Query: 59 SCSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQ 118
+C KL G FP LP+ + I C L+ S LP L + ++ C +V +
Sbjct: 886 NCPKLLGRFPSCLPSCVKITIAKCPMLVDSDEKLPVLGELKLEECDEV-----------K 934
Query: 119 NSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITS 178
+ ++S L L++ ++ TY+ +LLQ + +LK L I+
Sbjct: 935 PKCMFHNSS---------------LITLKLGSMSRLTYL---KGQLLQSLGALKVLMISD 976
Query: 179 CPKLQSL------VAEEEKDQQQQLCELSCRLEYL--RLSNCEGLVKLPQSSLS-LSSLR 229
PKL SL + E Q L E+ + +LS C+ L LP ++ L SL
Sbjct: 977 FPKLTSLWQKGTGLENFEHPQFVSLTEIGMPSTHKSSKLSGCDKLDLLPIHTVHMLLSLE 1036
Query: 230 EIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLT 289
++ I C +LVS PE L S L+++ + C AL+SLP+ +N LE L I C SL
Sbjct: 1037 DLCIESCPNLVSIPEAGLLSSLRHLVLRDCKALRSLPDGM---SNCPLEDLEIEECPSLE 1093
Query: 290 YIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKN 349
LP +LK L I C +++L + + T C EHL+I CPSL
Sbjct: 1094 CFPGRMLPATLKGLKIRYCTELKSLPEDLMHNKNGPGTLCHFEHLEIIGCPSL------- 1146
Query: 350 ELPATLESLEVGNLPPSLKSLYVYGCSKLESIAER-LDNNTSLETISIERCGNLKILPSG 408
+S G LP LK+L ++ CS+L+ ++E L ++ SLE ++I C L P
Sbjct: 1147 ------KSFPDGKLPTRLKTLKIWDCSQLKPLSEMMLHDDMSLEYLAISDCEALSSFPEC 1200
Query: 409 LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG--GFHRYMIALHNLT- 465
L + + L + + NC L FP G P A LR L I +CK L+ R + +L LT
Sbjct: 1201 LSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTIYNCKNLKSLPNEMRKLTSLQELTI 1260
Query: 466 ----NLHSLYIGG------NMEIWKSMIERG----RGFHRFSSLRHLTIRG-CDDDMVSF 510
L S G ++EIW G + LR +I G C VSF
Sbjct: 1261 CSCPALKSFPNGDMPPHLTSLEIWDCDNLDGCLSEWNLQSLTCLRDFSIAGGCFSHTVSF 1320
Query: 511 PLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGL 570
P ++K L LP +LT++WI R PNLE LS + L L EL +V+CPKLK P L
Sbjct: 1321 P-DEKCL-----LPTNLTSVWIGRLPNLESLSMQLQSLAYLEELEIVDCPKLKSLPRGCL 1374
Query: 571 PSSLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVIDD 610
P +L + I CPL+ ++C K G YW L++HIP V IDD
Sbjct: 1375 PHALGRFSIRDCPLMTQRCSKLKGVYWPLISHIPCVEIDD 1414
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450023|ref|XP_002272823.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera] gi|451798994|gb|AGF69195.1| disease resistance protein At3g14460-like protein 2 [Vitis labrusca] | Back alignment and taxonomy information |
|---|
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 213/630 (33%), Positives = 303/630 (48%), Gaps = 83/630 (13%)
Query: 1 MSRVKSLGSEFYGND--SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHII 58
+ VK +G EFYG PFP LE+L F M +WEDW S E +P L L II
Sbjct: 832 LKEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDW---ESPSLSEPYPCLLHLEII 888
Query: 59 SCSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQ 118
+C KL P +LP+L I C +L+ + LP+L K + C + V RS + L S
Sbjct: 889 NCPKLIKKLPTNLPSLVHFSIGTCPQLVSPLERLPSLSKLRVQDCNEAVLRSGLE-LPSL 947
Query: 119 NSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITS 178
+ L + L+ L+I + T +W++ + +Q +L +S
Sbjct: 948 TELGIDRMVGLTRLHEGCMQLLSGLQVLDIDRCDKLTCLWENGFDGIQ------QLQTSS 1001
Query: 179 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSS 238
CP+L SL E+EK EL +L+ L++ C L KLP L+ L E+EI C
Sbjct: 1002 CPELVSL-GEKEKH------ELPSKLQSLKIRWCNNLEKLPNGLYRLTCLGELEIYDCPK 1054
Query: 239 LVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSS--------LEILSIHGCRSLTY 290
LVSFPE+ P L+ + I +C+ L+ LP+ M + S LE L IH C SL
Sbjct: 1055 LVSFPELGFPPMLRRLVIHSCEGLRCLPDWMMVMKDGSNNGSDVCLLEYLHIHTCPSLIG 1114
Query: 291 IAAVQLPPSLKQLSISDCDNIRTL--TVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSK 348
+LP +LK+L I C+ + +L + ++ TS L LDI CPSLT
Sbjct: 1115 FPEGELPTTLKELKIWRCEKLESLPGGMMHHDSNTTTATSGGLHVLDIWKCPSLTF---- 1170
Query: 349 NELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL--DNNTSLETISIERCGNLKILP 406
G P +LK L ++ C++LESI++ NN+SLE +SI LKI+P
Sbjct: 1171 ---------FPTGKFPSTLKKLEIWDCAQLESISKETFHSNNSSLEYLSIRSYPCLKIVP 1221
Query: 407 SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTN 466
L+ LR+L+ I NC N+ P L L I C+ ++ R+ +A LT+
Sbjct: 1222 DCLYKLRELE---INNCENVELLPHQLQNLTALTSLGIYRCENIKMPLSRWGLA--TLTS 1276
Query: 467 LHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPAS 526
L L IGG F R +S D P+ LP +
Sbjct: 1277 LKELTIGG-------------IFPRVASF---------SDGQRPPI----------LPTT 1304
Query: 527 LTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYF-PEKGLPSSLLQLQIYCCPL 584
LT L I F NL+ LSS ++ L +L +L + CPKL+ F P +GLP +L +L I CPL
Sbjct: 1305 LTFLSIQDFQNLKSLSSLALQTLTSLEDLWIQRCPKLQSFCPREGLPDTLSRLYITDCPL 1364
Query: 585 IAEKCRKDGGQYWDLLTHIPHVVIDDKRVF 614
+ ++C K GQ W + HIP+V IDDK VF
Sbjct: 1365 LKQRCSKGKGQDWPNIAHIPYVEIDDKNVF 1394
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 208/627 (33%), Positives = 306/627 (48%), Gaps = 83/627 (13%)
Query: 1 MSRVKSLGSEFYGND--SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHII 58
++ VK +G EFYG PFP LE+L F M +WEDW S E +P L L II
Sbjct: 833 LNEVKIVGREFYGETCLPNKPFPSLESLSFSAMSQWEDW---ESPSLSEPYPCLLHLEII 889
Query: 59 SCSKLQGTFPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQ 118
+C KL P +LP+L L I+ C + + + LP+L K +G C + V RS + L S
Sbjct: 890 NCPKLIKKLPTNLPSLVHLSIDTCPQWVSPLERLPSLSKLRVGDCNEAVLRSGLE-LPSL 948
Query: 119 NSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITS 178
+ L + L+ L+I + T +W++ + +Q +L +S
Sbjct: 949 TELRIERIVGLTRLHEGCMQLLSGLQVLDIDRCDELTCLWENGFDGIQ------QLQTSS 1002
Query: 179 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSS 238
CP+L SL E+EK + L +L+ L++ C L KLP L+ L E+EI C
Sbjct: 1003 CPELVSL-GEKEKHK------LPSKLQSLKILRCNNLEKLPNGLHRLTCLGELEIYNCPK 1055
Query: 239 LVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSS--------LEILSIHGCRSLTY 290
LVSFPE+ P L+ + I +C+ L+ LP+ M + S LE L I C SL
Sbjct: 1056 LVSFPELGFPPMLRRLVIVSCEGLRCLPDWMMVMKDGSNNGSDVCLLEYLEIDRCPSLIG 1115
Query: 291 IAAVQLPPSLKQLSISDCDNIRTL--TVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSK 348
+LP +LKQL I +C+ + +L + ++ TS L L+I CPSLT
Sbjct: 1116 FPEGELPTTLKQLRIWECEKLESLPGGMMHHDSNTTTATSGGLHVLEIWDCPSLTF---- 1171
Query: 349 NELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL--DNNTSLETISIERCGNLKILP 406
G P +LK L ++ C++LESI++ NN+SLE +SI LKI+P
Sbjct: 1172 ---------FPTGKFPSTLKKLQIWDCAQLESISKETFHSNNSSLEYLSIRSSPCLKIVP 1222
Query: 407 SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTN 466
L+ LR+L+ I NC N+ P L L I C+ ++ R+
Sbjct: 1223 DCLYKLRELE---INNCENVELLPHQLQNLTALTSLGIYRCENIKTPLSRW--------- 1270
Query: 467 LHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPAS 526
G +SL+ LTI G + SF + +R L LP +
Sbjct: 1271 ---------------------GLATLTSLKKLTIGGIFPRVASFS-DGQR---PLILPTT 1305
Query: 527 LTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYF-PEKGLPSSLLQLQIYCCPL 584
LT L+I F NL+ LSS ++ L +L +L++ +CPKL+ F P +GLP +L +L I CPL
Sbjct: 1306 LTFLFIQDFQNLKSLSSLALQTLTSLEKLLIEDCPKLESFCPREGLPDTLSRLYIKDCPL 1365
Query: 585 IAEKCRKDGGQYWDLLTHIPHVVIDDK 611
+ ++C K GQ W + HIP+V IDDK
Sbjct: 1366 LKQRCSKRKGQDWPNIAHIPYVRIDDK 1392
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 616 | ||||||
| TAIR|locus:2091662 | 1424 | AT3G14460 [Arabidopsis thalian | 0.407 | 0.176 | 0.316 | 4.9e-24 | |
| TAIR|locus:2163426 | 1187 | TAO1 "target of AVRB operation | 0.394 | 0.204 | 0.286 | 4.2e-18 | |
| TAIR|locus:2094498 | 1981 | AT3G25510 [Arabidopsis thalian | 0.514 | 0.160 | 0.241 | 5.3e-12 | |
| TAIR|locus:2098110 | 1219 | AT3G44670 [Arabidopsis thalian | 0.378 | 0.191 | 0.270 | 6.8e-12 | |
| TAIR|locus:2091672 | 1054 | AT3G14470 [Arabidopsis thalian | 0.131 | 0.076 | 0.397 | 8e-12 | |
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.644 | 0.306 | 0.246 | 2.4e-10 | |
| UNIPROTKB|O48647 | 1802 | O48647 "XA1" [Oryza sativa (ta | 0.292 | 0.099 | 0.318 | 3.4e-10 | |
| TAIR|locus:2076043 | 1194 | RPP1 "recognition of peronospo | 0.428 | 0.221 | 0.253 | 1.3e-09 | |
| TAIR|locus:2129236 | 1301 | SNC1 "SUPPRESSOR OF NPR1-1, CO | 0.446 | 0.211 | 0.241 | 3.8e-09 | |
| TAIR|locus:2827629 | 1355 | AT2G17050 [Arabidopsis thalian | 0.337 | 0.153 | 0.268 | 5.3e-09 |
| TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 241 (89.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 89/281 (31%), Positives = 131/281 (46%)
Query: 197 LCELSCRLEYLRLSNCEGLVKLPQXXXXXX-XXREIEICKCSSLVSFPEVALPSKLKNIW 255
L EL L+ L + +C+GL LP+ E+ I C SL SFP P+ LK ++
Sbjct: 1086 LMELPQNLQSLHIDSCDGLTSLPENLTESYPNLHELLIIACHSLESFPGSHPPTTLKTLY 1145
Query: 256 ISTCDALKSLPEAWMCDTNSSLEILSI-HGCRSLTYIAAVQLPPSLKQLSISDCDNIRTL 314
I C L + S LE L I C +L + L P L+ LSI DC++ +T
Sbjct: 1146 IRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFP-LSLFPKLRSLSIRDCESFKTF 1204
Query: 315 TVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPAT-LESLEVGN------LPP-- 365
++ G+ R LE L+I CP+L F + LP L S+ + N LP
Sbjct: 1205 SIHAGLGDDR----IALESLEIRDCPNLET-FPQGGLPTPKLSSMLLSNCKKLQALPEKL 1259
Query: 366 ----SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKI-LPSGLHNLRQLQGIKI 420
SL SL++ C ++E+I ++L T+ I C L + GL +L L+ ++I
Sbjct: 1260 FGLTSLLSLFIIKCPEIETIPGG-GFPSNLRTLCISLCDKLTPRIEWGLRDLENLRNLEI 1318
Query: 421 WNCGN--LVSFPEGGLPCAKLRRLDISDCKRLEG----GFH 455
+ GN + SFPE GL + L IS + L+ GFH
Sbjct: 1319 -DGGNEDIESFPEEGLLPKSVFSLRISRFENLKTLNRKGFH 1358
|
|
| TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 73/255 (28%), Positives = 127/255 (49%)
Query: 204 LEYLRLSNCEGLVKLPQXXXXXXXXREIEICKCSSLVSFPE-VALPSKLKNIWISTCDAL 262
L+ LRL NC LV+LP E+++ CSSLV P + + LK ++++ C +L
Sbjct: 682 LQELRLINCLSLVELPSSIGNATNLLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSL 741
Query: 263 KSLPEAWMCDTNSSLEILSIHGCRSLTYI-AAVQLPPSLKQLSISDCDNIRTLTVEEGIQ 321
LP ++ +SL+ L++ GC SL I +++ +LK++ C ++ L G
Sbjct: 742 VKLPSSF--GNVTSLKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNN 799
Query: 322 SSRRYTSCLLEHLDISSCPSLTCIFSKNE---LPATLESLE---VGNLPPSLKSLYVYGC 375
++ + LL + CPS ++ E L L ++ +GN+ +L+SLY+ C
Sbjct: 800 TNLKELH-LLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPSIGNVI-NLQSLYLSDC 857
Query: 376 SKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLP 435
S L + ++N T+L+T+ ++ C NL LPS + N+ LQ + + C +L P
Sbjct: 858 SSLMELPFTIENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVEN 917
Query: 436 CAKLRRLDISDCKRL 450
L+ L + C L
Sbjct: 918 AINLQSLSLMKCSSL 932
|
|
| TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 85/352 (24%), Positives = 151/352 (42%)
Query: 238 SLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA-VQL 296
SL P+++ + L+ + + C +L +P L++L +HGC S+ + + +
Sbjct: 676 SLKELPDLSTATNLEELILKYCVSLVKVPSC--VGKLGKLQVLCLHGCTSILELPSFTKN 733
Query: 297 PPSLKQLSISDCDNIRTL--TVEEGIQSSRRYTSCL-LEHLDISSCPSLTCI--FSKNEL 351
L+ L +++C ++ L ++ I CL L L +S T + F N
Sbjct: 734 VTGLQSLDLNECSSLVELPSSIGNAINLQNLDLGCLRLLKLPLSIV-KFTNLKKFILNGC 792
Query: 352 PATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHN 411
+ +E +GN +L++L + CS L + + N +L+ + + C +L LPS + N
Sbjct: 793 SSLVELPFMGNAT-NLQNLDLGNCSSLVELPSSIGNAINLQNLDLSNCSSLVKLPSFIGN 851
Query: 412 LRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLE------GGFHRYMIA-LHNL 464
L+ + + C +LV P L RLD+S C L G + LHN
Sbjct: 852 ATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVELPSSVGNISELQVLNLHNC 911
Query: 465 TNLHSL--YIGGNMEIWK-------SMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDK 515
+NL L G +W+ S++E ++L+ L + C + +V P
Sbjct: 912 SNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQELNLCNCSN-LVKLP---- 966
Query: 516 RXXXXXXXXXXXXXXWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567
++R LE L S+I +L++L L L +C + K FPE
Sbjct: 967 ---SSIGNLHLLFTLSLARCQKLEALPSNI-NLKSLERLDLTDCSQFKSFPE 1014
|
|
| TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 73/270 (27%), Positives = 128/270 (47%)
Query: 204 LEYLRLSNCEGLVKLPQXXXXXXXXREIEICKCSSLVSFPEVALPSKLKNIWISTCDALK 263
LE L+L +C LV+LP + + + +CSSLV P +KL+ +++ C +L+
Sbjct: 741 LEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLE 800
Query: 264 SLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSS 323
LP + + N+ L+ LS+ C + + A++ +L++L + +C ++ L + G
Sbjct: 801 KLPPS--INANN-LQQLSLINCSRVVELPAIENATNLQKLDLGNCSSLIELPLSIG---- 853
Query: 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN------LPPS-----LKSLYV 372
T+ L+ L+IS C SL + S L+ ++ N LP + L +L +
Sbjct: 854 ---TATNLKELNISGCSSLVKLPSSIGDITNLKEFDLSNCSNLVELPININLKFLDTLNL 910
Query: 373 YGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG 432
GCS+L+S E IS KI + +L+ ++I NC NLVS P+
Sbjct: 911 AGCSQLKSFPE----------IST------KIFTDCYQRMSRLRDLRINNCNNLVSLPQL 954
Query: 433 GLPCAKLRRLDISDCKRLEGGFHRYMIALH 462
A L + +RL+ F+ I+L+
Sbjct: 955 PDSLAYLYADNCKSLERLDCCFNNPEISLN 984
|
|
| TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 169 (64.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 35/88 (39%), Positives = 55/88 (62%)
Query: 1 MSRVKSLGSEFYGNDSPI------PFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRE 54
M ++S+G +FY +D + PF LETLRF+N+ +W++W+ +R +G + FP L++
Sbjct: 823 MVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKK 881
Query: 55 LHIISCSKLQGTFPEHLPALEMLVIEGC 82
L I+ C +L GT P LP+L L I C
Sbjct: 882 LFILRCPELTGTLPTFLPSLISLHIYKC 909
|
|
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 107/434 (24%), Positives = 175/434 (40%)
Query: 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQXXXX 224
+Q + +LK++ ++ C + LV E D + + LE L LS C+ LV++
Sbjct: 621 IQPLRNLKKMDLSRC---KYLV--EVPDLSK-----ATNLEELNLSYCQSLVEVTPSIKN 670
Query: 225 XXXXREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPE-AWMCDTNSSLEILSIH 283
+ C L P + L+ + +S C +LK PE +W N+ LS
Sbjct: 671 LKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISW----NTRRLYLSST 726
Query: 284 GCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG-IQS--SRRYTSCL-LEHLDISSC 339
L +++ L +L +SDC +RTL G + S S C LE+L +
Sbjct: 727 KIEELP--SSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLP-DTL 783
Query: 340 PSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERC 399
+LT + + E+ L E + S++ L + S +E I R+ N + L ++ I
Sbjct: 784 QNLTSLETL-EVSGCLNVNEFPRVSTSIEVLRISETS-IEEIPARICNLSQLRSLDISEN 841
Query: 400 GNLKILPSGLHNLRQLQGIKIWNCGNLVSFP-E--GGLPCAKLRRLDISDCKRLEGGFHR 456
L LP + LR L+ +K+ C L SFP E + C + LD + K L
Sbjct: 842 KRLASLPVSISELRSLEKLKLSGCSVLESFPLEICQTMSCLRWFDLDRTSIKELPENIGN 901
Query: 457 YMIALHNLTNLHSLYIGGNMEIWK----SMIERGRGFHRFSSLRHLTIRGCD--DDMVSF 510
++AL L ++ I + ++ G F L H DD+ +
Sbjct: 902 -LVALEVLQASRTVIRRAPWSIARLTRLQVLAIGNSFFTPEGLLHSLCPPLSRFDDLRAL 960
Query: 511 PLEDKRXXXXXXXXXXXXXXWISRFP--NLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568
L + N E + +SI L L L L NC +L+ P++
Sbjct: 961 SLSNMNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQRLQALPDE 1020
Query: 569 GLPSSLLQLQIYCC 582
LP LL + I+ C
Sbjct: 1021 -LPRGLLYIYIHSC 1033
|
|
| UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 63/198 (31%), Positives = 94/198 (47%)
Query: 251 LKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDN 310
LK + +S +LKSL E C ++LE L I GC SL + +Q +L+ + + C
Sbjct: 1597 LKQLEVSGTTSLKSL-ELQSC---TALEHLKIQGCASLATLEGLQFLHALRHMKVFRCPG 1652
Query: 311 IRTLTVEEGIQSSRRYTSC-LLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKS 369
+ G S + Y C LE LDI LT F K+ +L+ LE+ +
Sbjct: 1653 LPPYL---GSSSEQGYELCPRLERLDIDDPSILTTSFCKHL--TSLQRLELNYCGSEVAR 1707
Query: 370 LYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF 429
L + E + L TSL+ + + C NL LP+GLH+L L+ ++I +C ++
Sbjct: 1708 L----TDEQERALQLL---TSLQELRFKYCYNLIDLPAGLHSLPSLKRLEIRSCRSIARL 1760
Query: 430 PEGGLPCAKLRRLDISDC 447
PE GLP LDI C
Sbjct: 1761 PEKGLP-PSFEELDIIAC 1777
|
|
| TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 74/292 (25%), Positives = 131/292 (44%)
Query: 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQXXXX 224
L +L+ L + +C L L + EK L+ L+ L L NC L KLP
Sbjct: 733 LSTATNLEELKLRNCSSLVELPSSIEK--------LTS-LQILDLENCSSLEKLP-AIEN 782
Query: 225 XXXXREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIH 283
RE+++ CSSL+ P + + LK + IS C +L LP + + D + LE+ +
Sbjct: 783 ATKLRELKLQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSS-IGDI-TDLEVFDLS 840
Query: 284 GCRSL-TYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSL 342
C SL T +++ +L +L + C + L + ++S T L + + S P +
Sbjct: 841 NCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPININLKSLD--TLNLTDCSQLKSFPEI 898
Query: 343 TCIFSKNELPATLESLEVGNLPPSLKS---LYVYGCSKLESIAERLDNNTSLETISIERC 399
+ S+ L T + +P S+ S L + S ES+ E + + + +
Sbjct: 899 STHISELRLKGTA----IKEVPLSIMSWSPLADFQISYFESLMEFPHAFDIITKLHLSK- 953
Query: 400 GNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLE 451
+++ +P + + +L+ + + NC NLVS P+ L + +CK LE
Sbjct: 954 -DIQEVPPWVKRMSRLRDLSLNNCNNLVSLPQLS---DSLDYIYADNCKSLE 1001
|
|
| TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 74/306 (24%), Positives = 129/306 (42%)
Query: 182 LQSLVAEEEKD--QQQQLCEL-----SCRLEYLRLSNCEGLVKLPQXXXXXXXXREIEIC 234
+QSL + E D + + L E+ + +LE L L+NC+ LV LP +E+
Sbjct: 769 IQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMK 828
Query: 235 KCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV 294
+C+ L P S L+ + +S C +L+S P + TN L + + +
Sbjct: 829 ECTGLEVLPTDVNLSSLETLDLSGCSSLRSFP---LISTNIVWLYLENTAIEEIP--STI 883
Query: 295 QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTC--IFSKNELP 352
L +L + C + L + + S LE LD+S C SL + S++
Sbjct: 884 GNLHRLVRLEMKKCTGLEVLPTDVNLSS--------LETLDLSGCSSLRSFPLISESIKW 935
Query: 353 ATLESLEVGNLPP-----SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS 407
LE+ + +P +LK+L + C L ++ + N L + ++ C L++LP
Sbjct: 936 LYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLPI 995
Query: 408 GLHNLRQLQGIKIWNCGNLVSFP--EGGLPCAKLRRLDISDCKRLEGGFHRYM-IALHNL 464
+ NL L + + C +L +FP + L I + G HR + + +
Sbjct: 996 DV-NLSSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKEC 1054
Query: 465 TNLHSL 470
T L L
Sbjct: 1055 TGLEVL 1060
|
|
| TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 64/238 (26%), Positives = 107/238 (44%)
Query: 231 IEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSL-- 288
+ + LV E+ ++ I + C ++S P L ++++ GC +
Sbjct: 464 VRLSHSQDLVEIEELIKSKNIEVIDLQGCTKIQSFPATRHLQ---HLRVINLSGCVEIKS 520
Query: 289 TYIAAVQ-LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI-F 346
T + Q P +LK+L +S IR +T SS +S LE LD+S+C L +
Sbjct: 521 TQLEEFQGFPRNLKELYLSGT-GIREVT------SSIHLSS--LEVLDLSNCKRLQNLPM 571
Query: 347 SKNELPATLESLEVG--------NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIER 398
K L + ++ + G +LP +LK LY+ G S + + + + T L E
Sbjct: 572 GKGNLASLIKLMLSGCSKLQNIQDLPTNLKELYLAGTS-IREVPSSICHLTQLVVFDAEN 630
Query: 399 CGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDC--KRLEGGF 454
C L+ LP G+ NL L + + C L S P+ LP LR L++++ K+L F
Sbjct: 631 CKKLQDLPMGMGNLISLTMLILSGCSELRSIPD--LP-RNLRHLNLAETPIKKLPSSF 685
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 616 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 2e-10 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 3e-10 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 7e-10 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 2e-04 | |
| PRK15386 | 426 | PRK15386, PRK15386, type III secretion protein Gog | 3e-04 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 73/264 (27%), Positives = 114/264 (43%), Gaps = 62/264 (23%)
Query: 213 EGLVKL--PQSSL--------SLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDAL 262
E LVKL S L SL+ LR I++ +L P++++ + L+ + +S C +L
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670
Query: 263 KSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQS 322
LP SS++ L+ L+ L +S C+N+ L ++S
Sbjct: 671 VELP--------SSIQYLN-----------------KLEDLDMSRCENLEILPTGINLKS 705
Query: 323 SRRYT----SCLLEHLDISSCPSLTCIF--SKNELPATLESLEVGNLPPSLKSLYVYG-C 375
R S L DIS+ S + + E P+ L L++L C
Sbjct: 706 LYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR----------LENLDELILC 755
Query: 376 S-KLESIAERLDNNTSLETI---SIERC-----GNLKILPSGLHNLRQLQGIKIWNCGNL 426
K E + ER+ T L T+ S+ R +L LPS + NL +L+ ++I NC NL
Sbjct: 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815
Query: 427 VSFPEGGLPCAKLRRLDISDCKRL 450
+ P G+ L LD+S C RL
Sbjct: 816 ETLPT-GINLESLESLDLSGCSRL 838
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 3e-10
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 51/277 (18%)
Query: 200 LSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTC 259
++ LE L+LS+C LV+LP S L+ L ++++ +C +L P L + +S C
Sbjct: 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC 714
Query: 260 DALKSLPE-----AWMCDTNSSLE----------ILSIHGC--RSLTYIAAVQ------- 295
LKS P+ +W+ +++E + + C +S VQ
Sbjct: 715 SRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774
Query: 296 -LPPSLKQLSISDCDNIRTLT-VEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPA 353
L PSL +L +SD I +L + IQ+ + LEHL+I +C
Sbjct: 775 MLSPSLTRLFLSD---IPSLVELPSSIQNLHK-----LEHLEIENC-------------I 813
Query: 354 TLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLR 413
LE+L G SL+SL + GCS+L + D +T++ +++ R G ++ +P +
Sbjct: 814 NLETLPTGINLESLESLDLSGCSRLRTFP---DISTNISDLNLSRTG-IEEVPWWIEKFS 869
Query: 414 QLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRL 450
L + + C NL L +D SDC L
Sbjct: 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-10
Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 22/219 (10%)
Query: 367 LKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNL 426
L+++ + G L+ I + L T+LET+ + C +L LPS + L +L+ + + C NL
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694
Query: 427 VSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERG 486
P G + L RL++S C RL+ TN+ L + + IE
Sbjct: 695 EILPTG-INLKSLYRLNLSGCSRLK-------SFPDISTNISWLDLDE------TAIEEF 740
Query: 487 RGFHRFSSLRHLTIRGCDDDMVSFPLEDK-RLGTAL--PLPASLTTLWISRFPNLERLSS 543
R +L L + C+ M S L ++ + T L L SLT L++S P+L L S
Sbjct: 741 PSNLRLENLDELIL--CE--MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796
Query: 544 SIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCC 582
SI +L L L + NC L+ P SL L + C
Sbjct: 797 SIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 37/146 (25%)
Query: 279 ILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLT--VEEGIQSSRRYTSCLLEHLDI 336
L I C + + LP L +++I +C+N+ TL + EG LE L +
Sbjct: 56 RLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSIPEG-----------LEKLTV 101
Query: 337 SSCPSLTCIFSKNELPATLESLEVG--------NLPPSLKSLYVYGCSKLESIAERLDN- 387
CP ++ LP ++ SLE+ N+P L SL + + R+DN
Sbjct: 102 CHCPEIS------GLPESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQA--RIDNL 153
Query: 388 -NTSLETISIERCGNLKI---LPSGL 409
+ SL+T+S+ C N+ + LP L
Sbjct: 154 ISPSLKTLSLTGCSNIILPEKLPESL 179
|
Length = 426 |
| >gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 207 LRLSNC--EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKS 264
L + +C E L LP L EI I C++L + P ++P L+ + + C +
Sbjct: 57 LYIKDCDIESLPVLPNE------LTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISG 109
Query: 265 LPEA------------WMCDTNSSLEILSIHGCR--SLTYIAAVQLPPSLKQLSISDCDN 310
LPE+ + + + L LSI+ + I + + PSLK LS++ C N
Sbjct: 110 LPESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNL-ISPSLKTLSLTGCSN 168
Query: 311 I 311
I
Sbjct: 169 I 169
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 616 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.86 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.84 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.84 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.8 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.79 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.79 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.71 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.53 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.43 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.37 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.36 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.31 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.27 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.12 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.07 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.06 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.05 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.03 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.91 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.89 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.87 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.59 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.57 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.54 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.51 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.41 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.36 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.27 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.26 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.18 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.1 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.1 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.08 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.92 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 97.9 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.88 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.88 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.87 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.78 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.76 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.7 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.63 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.5 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.41 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.34 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.27 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.18 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.08 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.07 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.86 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.77 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.13 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.76 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.5 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.22 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.76 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.37 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.24 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 94.1 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 93.8 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 93.55 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.44 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 90.82 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 90.71 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 90.68 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 88.83 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 83.6 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 81.54 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=327.48 Aligned_cols=254 Identities=20% Similarity=0.145 Sum_probs=124.4
Q ss_pred hHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCC
Q 007138 163 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSF 242 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 242 (616)
..++.+++|++|+++++.....++. .+..+ ++|++|++++|...+.+|..++.+++|++|++++|.....+
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPY-----EIGGL----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCCh-----hHhcC----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 4456666666666666543222322 24444 66666666666654556666666666666666666433334
Q ss_pred C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccEEEEecCCCCCcccccccc
Q 007138 243 P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEGI 320 (616)
Q Consensus 243 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~ 320 (616)
| .+..+++|++|++++|.....++..+ ..+++|+.|+++++......+.. ..+++|+.|++++|.-...+ +..+
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l 352 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNL 352 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--ChHH
Confidence 4 33446666666666665433444432 34466666666655432222221 34456666666666432222 3333
Q ss_pred cccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccc
Q 007138 321 QSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCG 400 (616)
Q Consensus 321 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 400 (616)
.. +++|+.|+++++ .+.. ..|..+..+ ++++.|++++|...+.+|..+..+++|+.|++++|.
T Consensus 353 ~~-----~~~L~~L~Ls~n-~l~~-----~~p~~~~~~------~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 353 GK-----HNNLTVLDLSTN-NLTG-----EIPEGLCSS------GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred hC-----CCCCcEEECCCC-eeEe-----eCChhHhCc------CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 32 456666666653 2221 112222222 444455555444444444444444555555555544
Q ss_pred ccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccC
Q 007138 401 NLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 401 ~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 446 (616)
..+.+|..+..+++|+.|++++|.....++.....+++|+.|++++
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 4444444444445555555544433223333233333444444444
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=316.02 Aligned_cols=512 Identities=18% Similarity=0.185 Sum_probs=380.7
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC-CCCCccEEeecCCc---chhhhhcC
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE-HLPALEMLVIEGCE---ELLVSVAS 91 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~~~~L~~L~l~~c~---~l~~~~~~ 91 (616)
++..+++|+.|++.++. +....+... . ..+++|++|++++|. +.+.+|. .+++|++|++++|. .++..+..
T Consensus 88 ~~~~l~~L~~L~Ls~n~-~~~~ip~~~-~--~~l~~L~~L~Ls~n~-l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQ-LSGPIPDDI-F--TTSSSLRYLNLSNNN-FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred HHhCCCCCCEEECCCCc-cCCcCChHH-h--ccCCCCCEEECcCCc-cccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 36779999999999873 443333222 1 378999999999986 5556774 68999999999997 34567889
Q ss_pred CCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCc
Q 007138 92 LPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSL 171 (616)
Q Consensus 92 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 171 (616)
+++|++|++++|.... ..+..++....+...+..++. +.+.+|..+.+++.|+..+++.+...+ ..+..++.+++|
T Consensus 163 l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L 238 (968)
T PLN00113 163 FSSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSL 238 (968)
T ss_pred CCCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCCCC
Confidence 9999999999998654 334455666666666555442 345677666666666665555554422 344557899999
Q ss_pred cEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC-CCCCCC
Q 007138 172 KRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSK 250 (616)
Q Consensus 172 ~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~ 250 (616)
++|++++|.....++. .+..+ ++|++|++++|...+.+|..+..+++|++|++++|.....+|. +..+++
T Consensus 239 ~~L~L~~n~l~~~~p~-----~l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 309 (968)
T PLN00113 239 NHLDLVYNNLTGPIPS-----SLGNL----KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309 (968)
T ss_pred CEEECcCceeccccCh-----hHhCC----CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence 9999999864333433 36666 8999999999988778899999999999999999865555663 456899
Q ss_pred CcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccEEEEecCCCCCcccccccccccccccCC
Q 007138 251 LKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSC 329 (616)
Q Consensus 251 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 329 (616)
|+.|++++|.....++..+ ..+++|+.|+++++.....++.. ...++|+.|+++++.-...+ +..+.. ++
T Consensus 310 L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~-----~~ 380 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCS-----SG 380 (968)
T ss_pred CcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC--ChhHhC-----cC
Confidence 9999999998655566544 56789999999987644344432 55679999999988533333 443333 67
Q ss_pred CccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccc
Q 007138 330 LLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGL 409 (616)
Q Consensus 330 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l 409 (616)
+|+.|+++++. +. +.+|..+..+ ++|+.|++++|...+.+|..+..+++|+.|++++|...+.++..+
T Consensus 381 ~L~~L~l~~n~-l~-----~~~p~~~~~~------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 381 NLFKLILFSNS-LE-----GEIPKSLGAC------RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred CCCEEECcCCE-ec-----ccCCHHHhCC------CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 89999998843 33 2344445444 899999999998888888889999999999999998777788778
Q ss_pred cCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccc
Q 007138 410 HNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGF 489 (616)
Q Consensus 410 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 489 (616)
..+++|+.|++++|.....+|.. ...++|+.|++++| .+++..|. .+.++++|+.|++++|.... ..+..+
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n-~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~----~~p~~~ 519 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRN-QFSGAVPR---KLGSLSELMQLKLSENKLSG----EIPDEL 519 (968)
T ss_pred ccCCCCcEEECcCceeeeecCcc-cccccceEEECcCC-ccCCccCh---hhhhhhccCEEECcCCccee----eCChHH
Confidence 89999999999999766566553 34458999999994 77777775 56788999999999996331 233456
Q ss_pred cccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG 569 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 569 (616)
..+++|+.|++++| .....+|... ..+++|++|++++|+....+|..+..++.|+++++++|+-...+|..+
T Consensus 520 ~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 520 SSCKKLVSLDLSHN-QLSGQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred cCccCCCEEECCCC-cccccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 78899999999996 2233445444 368999999999987777899889999999999999987777788765
Q ss_pred CcCCcceEEEcCCc
Q 007138 570 LPSSLLQLQIYCCP 583 (616)
Q Consensus 570 ~~~~L~~L~i~~c~ 583 (616)
.+..+....+.+++
T Consensus 592 ~~~~~~~~~~~~n~ 605 (968)
T PLN00113 592 AFLAINASAVAGNI 605 (968)
T ss_pred hhcccChhhhcCCc
Confidence 54455555555554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=239.04 Aligned_cols=133 Identities=27% Similarity=0.376 Sum_probs=76.2
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccce
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLH 468 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~ 468 (616)
++|+.|++++|+.+..+|..+.++++|+.|++++|..+..+|... .+++|++|++++|..+... |
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~-p------------- 842 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF-P------------- 842 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-c-------------
Confidence 355555555555555555555555555555555555555554433 3335555555555444221 1
Q ss_pred eeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccC
Q 007138 469 SLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDL 548 (616)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~ 548 (616)
....+|+.|++++| .++.+|.... .+++|+.|++.+|++++.+|.....+
T Consensus 843 ---------------------~~~~nL~~L~Ls~n--~i~~iP~si~-------~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 843 ---------------------DISTNISDLNLSRT--GIEEVPWWIE-------KFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred ---------------------ccccccCEeECCCC--CCccChHHHh-------cCCCCCEEECCCCCCcCccCcccccc
Confidence 11245667777665 5566665442 56777777777777777777666677
Q ss_pred ccccEEEecCCCCCcccC
Q 007138 549 QNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~ 566 (616)
+.|+.+++++|..++.++
T Consensus 893 ~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 893 KHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCCCeeecCCCccccccc
Confidence 777777777777776543
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=230.23 Aligned_cols=345 Identities=22% Similarity=0.313 Sum_probs=229.3
Q ss_pred cchhHHhcCCCccEEeeccCC--C---cc-ccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEE
Q 007138 160 SHNELLQDICSLKRLTITSCP--K---LQ-SLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEI 233 (616)
Q Consensus 160 ~~~~~~~~l~~L~~L~l~~~~--~---l~-~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 233 (616)
.....|..|++|+.|.+.... . +. .++. .+ ..++.+|+.|++.+++. ..+|..+ ...+|++|++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-----~~---~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-----GF---DYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCc-----ch---hhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEEC
Confidence 345567888888888886432 1 11 1111 12 22346788888888765 6777766 4678888888
Q ss_pred cCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccEEEEecCCCC
Q 007138 234 CKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNI 311 (616)
Q Consensus 234 ~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l 311 (616)
.++ .+..++ ....+++|+.++++++..+..+|.. ..+++|+.|++++|..+..++.. ..+++|+.|++++|..+
T Consensus 619 ~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 619 QGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred cCc-cccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 886 466665 3445788888888887777777653 45577888888877777666544 45567777777777777
Q ss_pred CcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCc
Q 007138 312 RTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSL 391 (616)
Q Consensus 312 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 391 (616)
+.+ |..+ .+++|+.|++++|..+.. +| ... .+|+.|+++++. +..+|..+ .+++|
T Consensus 695 ~~L--p~~i------~l~sL~~L~Lsgc~~L~~-~p-----~~~---------~nL~~L~L~~n~-i~~lP~~~-~l~~L 749 (1153)
T PLN03210 695 EIL--PTGI------NLKSLYRLNLSGCSRLKS-FP-----DIS---------TNISWLDLDETA-IEEFPSNL-RLENL 749 (1153)
T ss_pred Ccc--CCcC------CCCCCCEEeCCCCCCccc-cc-----ccc---------CCcCeeecCCCc-cccccccc-ccccc
Confidence 666 4433 156677777777765543 22 111 566777776664 34455433 45666
Q ss_pred cEEEccccccccc------c-cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhccc
Q 007138 392 ETISIERCGNLKI------L-PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNL 464 (616)
Q Consensus 392 ~~L~l~~~~~l~~------~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l 464 (616)
+.|.+.++..... + +......++|+.|++++|+.+..+|.....+++|+.|++++|+.++.. |.
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~-------- 820 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PT-------- 820 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CC--------
Confidence 6666665432110 0 011123356666666666666666665555556666666666655432 11
Q ss_pred ccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc
Q 007138 465 TNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS 544 (616)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 544 (616)
. ..+++|+.|++++ |..+..++. .+++|+.|++++ +.++.+|..
T Consensus 821 -----------------------~-~~L~sL~~L~Ls~-c~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~s 864 (1153)
T PLN03210 821 -----------------------G-INLESLESLDLSG-CSRLRTFPD----------ISTNISDLNLSR-TGIEEVPWW 864 (1153)
T ss_pred -----------------------C-CCccccCEEECCC-CCccccccc----------cccccCEeECCC-CCCccChHH
Confidence 2 2578899999999 566777765 357899999999 679999999
Q ss_pred cccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCchhhhh
Q 007138 545 IVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCPLIAEK 588 (616)
Q Consensus 545 ~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~ 588 (616)
+..+++|+.|++.+|++++.+|.. ..+++|+.+++++|+.+...
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 999999999999999999999884 34789999999999988653
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-24 Score=222.03 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=102.1
Q ss_pred EeeccCCCcccccCCCC-C--CccEEeecCCcchh---hhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCc
Q 007138 55 LHIISCSKLQGTFPEHL-P--ALEMLVIEGCEELL---VSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSN 128 (616)
Q Consensus 55 L~l~~c~~l~~~~p~~~-~--~L~~L~l~~c~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (616)
+++++|. ++ .+|... + .+..|.+..+..+. ..+.+..+|+.|+++.+.....
T Consensus 3 vd~s~~~-l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-------------------- 60 (1081)
T KOG0618|consen 3 VDASDEQ-LE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-------------------- 60 (1081)
T ss_pred ccccccc-Cc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC--------------------
Confidence 5566663 44 566432 1 17777777766443 3344455699999999876543
Q ss_pred ceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEE
Q 007138 129 QVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLR 208 (616)
Q Consensus 129 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~ 208 (616)
|..+..+.+|...+++.+.+ ...+.....+.+|++|.|.+ ..++.+|.+ +..+ .+|++|+
T Consensus 61 --------p~~it~l~~L~~ln~s~n~i--~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~-----~~~l----knl~~Ld 120 (1081)
T KOG0618|consen 61 --------PIQITLLSHLRQLNLSRNYI--RSVPSSCSNMRNLQYLNLKN-NRLQSLPAS-----ISEL----KNLQYLD 120 (1081)
T ss_pred --------CchhhhHHHHhhcccchhhH--hhCchhhhhhhcchhheecc-chhhcCchh-----HHhh----hcccccc
Confidence 34455555555555555443 12335568889999999876 446666654 7777 8899999
Q ss_pred ccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCC
Q 007138 209 LSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 209 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 260 (616)
+++|.+ ..+|..+..++.++.+..++|..+..++... ++.+++..+.
T Consensus 121 lS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~ 167 (1081)
T KOG0618|consen 121 LSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNV 167 (1081)
T ss_pred cchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhh
Confidence 999887 6788878888888888888874444444322 4555554444
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-22 Score=197.32 Aligned_cols=362 Identities=18% Similarity=0.201 Sum_probs=236.2
Q ss_pred CccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCC
Q 007138 170 SLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVAL 247 (616)
Q Consensus 170 ~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~ 247 (616)
.-+.|+++++. +..+.. ..+.++ ++|+++++..|.. +.+|...+...+|+.|++.+| .+..+. ++..
T Consensus 79 ~t~~LdlsnNk-l~~id~----~~f~nl----~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~ 147 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDF----EFFYNL----PNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHN-LISSVTSEELSA 147 (873)
T ss_pred ceeeeeccccc-cccCcH----HHHhcC----Ccceeeeeccchh-hhcccccccccceeEEeeecc-ccccccHHHHHh
Confidence 34556776643 443322 235555 7777777777654 677765555666777777776 455554 3344
Q ss_pred CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEEecCCCCCccccccccccccc
Q 007138 248 PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSISDCDNIRTLTVEEGIQSSRR 325 (616)
Q Consensus 248 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 325 (616)
++.|+.|+++.|. +..++...+ ..-.++++|+++++ .++.+... ..+.+|..|.++++ .++.+ |... +
T Consensus 148 l~alrslDLSrN~-is~i~~~sf-p~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrN-rittL--p~r~----F 217 (873)
T KOG4194|consen 148 LPALRSLDLSRNL-ISEIPKPSF-PAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRN-RITTL--PQRS----F 217 (873)
T ss_pred Hhhhhhhhhhhch-hhcccCCCC-CCCCCceEEeeccc-cccccccccccccchheeeecccC-ccccc--CHHH----h
Confidence 7777777777765 555543321 22256777777764 35554433 33447777778777 45555 3221 1
Q ss_pred ccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccc
Q 007138 326 YTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405 (616)
Q Consensus 326 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 405 (616)
.++++|+.|++.. +.+.. ++.+....+ ++|+.|.+..|....--...+..+.++++|++..|.....-
T Consensus 218 k~L~~L~~LdLnr-N~iri----------ve~ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 218 KRLPKLESLDLNR-NRIRI----------VEGLTFQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred hhcchhhhhhccc-cceee----------ehhhhhcCc-hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 2367788888876 44442 111122222 77888888877554433445677889999999887633322
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhh
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIE 484 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 484 (616)
..++-++++|+.|+++.| .+..+....| -+++|+.|++++ ++++...++ .+.-+..|+.|.|+.|.... .
T Consensus 286 ~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~---sf~~L~~Le~LnLs~Nsi~~----l 356 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG---SFRVLSQLEELNLSHNSIDH----L 356 (873)
T ss_pred cccccccchhhhhccchh-hhheeecchhhhcccceeEeccc-cccccCChh---HHHHHHHhhhhcccccchHH----H
Confidence 335678999999999987 5555544444 457899999998 788776665 56677888999999987543 2
Q ss_pred cCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCc
Q 007138 485 RGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 485 ~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~ 563 (616)
....|..+.+|++|++++| .+...-.. -..++..+++|+.|++.+ ++++.||. .+..++.|+.|++.+ |.+.
T Consensus 357 ~e~af~~lssL~~LdLr~N--~ls~~IED---aa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-Naia 429 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSN--ELSWCIED---AAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIA 429 (873)
T ss_pred HhhHHHHhhhhhhhcCcCC--eEEEEEec---chhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccce
Confidence 2236788899999999986 33322221 123555789999999999 78999987 788899999999998 8888
Q ss_pred ccCCCCC-cCCcceEEEc
Q 007138 564 YFPEKGL-PSSLLQLQIY 580 (616)
Q Consensus 564 ~l~~~~~-~~~L~~L~i~ 580 (616)
++-...+ .-.|++|.+.
T Consensus 430 SIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 430 SIQPNAFEPMELKELVMN 447 (873)
T ss_pred eecccccccchhhhhhhc
Confidence 8776544 2367777665
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-23 Score=204.21 Aligned_cols=359 Identities=20% Similarity=0.257 Sum_probs=198.4
Q ss_pred CCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCcc
Q 007138 150 NIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLR 229 (616)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 229 (616)
+.+.+.+.+...+.....|++++.|.+.. +++..+|.+ ++.+ .+|++|.+..|.. +.+...+..++.|+
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeE-----L~~l----qkLEHLs~~HN~L-~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEE-----LSRL----QKLEHLSMAHNQL-ISVHGELSDLPRLR 81 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHH-----HHHH----hhhhhhhhhhhhh-HhhhhhhccchhhH
Confidence 34444444445555667788888888876 446666654 6666 7788888888665 45555566777888
Q ss_pred EEEEcCCC-CCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEE
Q 007138 230 EIEICKCS-SLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSI 305 (616)
Q Consensus 230 ~L~l~~~~-~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l 305 (616)
.+.+++|. +-..+| .+..+..|..|++++|. ++..|... ....++-.|+++++ +++.+|.. ..++-|-.|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L--E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL--EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh--hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhcc
Confidence 88887763 123455 45557788888888776 66666553 33356666777764 46665543 23345555666
Q ss_pred ecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCC-chhhhhh
Q 007138 306 SDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK-LESIAER 384 (616)
Q Consensus 306 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~-~~~~~~~ 384 (616)
+++ .++.+ |.-+.. +.+|+.|.+++.+- .. +...- ++++ .+|+.|.+++... ...+|..
T Consensus 158 S~N-rLe~L--PPQ~RR-----L~~LqtL~Ls~NPL-~h-fQLrQ----LPsm------tsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 158 SNN-RLEML--PPQIRR-----LSMLQTLKLSNNPL-NH-FQLRQ----LPSM------TSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccc-hhhhc--CHHHHH-----HhhhhhhhcCCChh-hH-HHHhc----Cccc------hhhhhhhcccccchhhcCCCc
Confidence 665 45555 433333 55566666666221 11 11111 1112 5566666665432 3456666
Q ss_pred ccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhccc
Q 007138 385 LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNL 464 (616)
Q Consensus 385 ~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l 464 (616)
+..+.+|..++++.| .+..+|..+-.+++|+.|.+++| .++.+......-.+|++|+++. +.++.. |. .+.++
T Consensus 218 ld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~L-P~---avcKL 290 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVL-PD---AVCKL 290 (1255)
T ss_pred hhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccc-hH---HHhhh
Confidence 666777777777664 36667777777777777777776 3443332221112677777776 455442 22 34444
Q ss_pred ccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc
Q 007138 465 TNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS 544 (616)
Q Consensus 465 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 544 (616)
++|+.|.+.+|...+ ...+.++.++.+|+++..++| +++-+|.+.. .++.|+.|.+.+ +.+.++|..
T Consensus 291 ~kL~kLy~n~NkL~F---eGiPSGIGKL~~Levf~aanN--~LElVPEglc-------RC~kL~kL~L~~-NrLiTLPea 357 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTF---EGIPSGIGKLIQLEVFHAANN--KLELVPEGLC-------RCVKLQKLKLDH-NRLITLPEA 357 (1255)
T ss_pred HHHHHHHhccCcccc---cCCccchhhhhhhHHHHhhcc--ccccCchhhh-------hhHHHHHhcccc-cceeechhh
Confidence 455555555444332 223334444555555555443 4444444432 344555555544 344445544
Q ss_pred cccCccccEEEecCCCCCc
Q 007138 545 IVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 545 ~~~~~~L~~L~l~~c~~l~ 563 (616)
+.-++.|+.|++++++++-
T Consensus 358 IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhcCCcceeeccCCcCcc
Confidence 4445555555555544443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-22 Score=194.93 Aligned_cols=352 Identities=17% Similarity=0.222 Sum_probs=248.4
Q ss_pred cchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCC
Q 007138 160 SHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSL 239 (616)
Q Consensus 160 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 239 (616)
.....|..+++|+++++..+. ++.+|.. .....+|+.|++.+|...+.-.+.+..++.|+.|+++.| .+
T Consensus 93 id~~~f~nl~nLq~v~l~~N~-Lt~IP~f---------~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~i 161 (873)
T KOG4194|consen 93 IDFEFFYNLPNLQEVNLNKNE-LTRIPRF---------GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LI 161 (873)
T ss_pred CcHHHHhcCCcceeeeeccch-hhhcccc---------cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hh
Confidence 566778899999999998754 5655543 111256889999887764444556777888999999887 57
Q ss_pred CCCCCC--CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEEecCCCCCccc
Q 007138 240 VSFPEV--ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSISDCDNIRTLT 315 (616)
Q Consensus 240 ~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~ 315 (616)
..++.- ..-.++++|++++|. ++.+...-+ .++.+|..|.++.+ .++.++.. ..+++|+.|++..+ .++.+.
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN-~irive 237 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN-RIRIVE 237 (873)
T ss_pred hcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC-cccccCHHHhhhcchhhhhhcccc-ceeeeh
Confidence 777633 335689999998887 665544322 44457888888875 46666654 34678888888776 344331
Q ss_pred ccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEE
Q 007138 316 VEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETIS 395 (616)
Q Consensus 316 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 395 (616)
+- .+..++.|+.|.+.. +++.. ..++.|..- .++++|+++.|....--..++..++.|+.|+
T Consensus 238 ~l------tFqgL~Sl~nlklqr-N~I~k-L~DG~Fy~l----------~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 238 GL------TFQGLPSLQNLKLQR-NDISK-LDDGAFYGL----------EKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hh------hhcCchhhhhhhhhh-cCccc-ccCcceeee----------cccceeecccchhhhhhcccccccchhhhhc
Confidence 11 122256677777765 44443 333433221 7889999998866554455678889999999
Q ss_pred cccccccccccccccCCCCCcEEEeccCCCCcccCCCCCC-CCCceEEEccCCcccccchhhhHhhhcccccceeeecCC
Q 007138 396 IERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLP-CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGG 474 (616)
Q Consensus 396 l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~ 474 (616)
++.|..-..-+.++..+++|+.|++++| .+..++++.+. +..|+.|.++. ++++.+-.. .|..+++|+.|||+.
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~---af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEG---AFVGLSSLHKLDLRS 374 (873)
T ss_pred cchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhh---HHHHhhhhhhhcCcC
Confidence 9998766666677888999999999998 67778776653 25789999998 677664322 567788999999999
Q ss_pred ChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccc-cccccCccccE
Q 007138 475 NMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTE 553 (616)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~ 553 (616)
|...|... .....+.++++|++|.+.+| +++.++... +..+++|++|++.+ +.+.+|- ..+..+ .|++
T Consensus 375 N~ls~~IE-Daa~~f~gl~~LrkL~l~gN--qlk~I~krA------fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 375 NELSWCIE-DAAVAFNGLPSLRKLRLTGN--QLKSIPKRA------FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred CeEEEEEe-cchhhhccchhhhheeecCc--eeeecchhh------hccCcccceecCCC-Ccceeecccccccc-hhhh
Confidence 98777211 12345778999999999997 889888854 55799999999999 5577664 467777 8888
Q ss_pred EEecCCC
Q 007138 554 LVLVNCP 560 (616)
Q Consensus 554 L~l~~c~ 560 (616)
|.+..-+
T Consensus 444 Lv~nSss 450 (873)
T KOG4194|consen 444 LVMNSSS 450 (873)
T ss_pred hhhcccc
Confidence 8877543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-22 Score=204.96 Aligned_cols=409 Identities=20% Similarity=0.219 Sum_probs=210.4
Q ss_pred cceEeeccCCCcccccCCC---CCCccEEeecCCc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCC
Q 007138 52 LRELHIISCSKLQGTFPEH---LPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDT 126 (616)
Q Consensus 52 L~~L~l~~c~~l~~~~p~~---~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (616)
|++|++++.. .+.||.. ++.|+.|.++++. +.+.+...+..|+++.+..+.....
T Consensus 47 L~~l~lsnn~--~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l------------------ 106 (1081)
T KOG0618|consen 47 LKSLDLSNNQ--ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL------------------ 106 (1081)
T ss_pred eEEeeccccc--cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC------------------
Confidence 6666665543 2244432 2445555555543 3334445555555555555543332
Q ss_pred CcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcE
Q 007138 127 SNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEY 206 (616)
Q Consensus 127 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~ 206 (616)
|.++..++.|...+++.+.+ ...+..+..+..+..+..+++..+..+ +. ..++.
T Consensus 107 ----------P~~~~~lknl~~LdlS~N~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~l---------g~-----~~ik~ 160 (1081)
T KOG0618|consen 107 ----------PASISELKNLQYLDLSFNHF--GPIPLVIEVLTAEEELAASNNEKIQRL---------GQ-----TSIKK 160 (1081)
T ss_pred ----------chhHHhhhcccccccchhcc--CCCchhHHhhhHHHHHhhhcchhhhhh---------cc-----ccchh
Confidence 23344444444444444433 122233344455555554444222222 11 22666
Q ss_pred EEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCC
Q 007138 207 LRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR 286 (616)
Q Consensus 207 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 286 (616)
+++..+...+.++..+..+++ .|++++|. +. .-....+++|+.+....+. +..+. ...++++.|+..+|.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~-~~-~~dls~~~~l~~l~c~rn~-ls~l~-----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNE-ME-VLDLSNLANLEVLHCERNQ-LSELE-----ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccch-hh-hhhhhhccchhhhhhhhcc-cceEE-----ecCcchheeeeccCc
Confidence 666666665566666555555 57777764 33 3334456777777666654 22221 223556666666554
Q ss_pred CCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCc
Q 007138 287 SLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPS 366 (616)
Q Consensus 287 ~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~ 366 (616)
+........+.+++.++++.. ++..+ |+++.. +.+|+.+.+
T Consensus 231 -l~~~~~~p~p~nl~~~dis~n-~l~~l--p~wi~~-----~~nle~l~~------------------------------ 271 (1081)
T KOG0618|consen 231 -LTTLDVHPVPLNLQYLDISHN-NLSNL--PEWIGA-----CANLEALNA------------------------------ 271 (1081)
T ss_pred -ceeeccccccccceeeecchh-hhhcc--hHHHHh-----cccceEecc------------------------------
Confidence 223333344445555555554 33333 333333 444444444
Q ss_pred ccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC--------------
Q 007138 367 LKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-------------- 432 (616)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------- 432 (616)
..|.. ..+|..+...++|+.|.+..|. ++.+|....++++|++|++..| ++..+|..
T Consensus 272 ------n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 272 ------NHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred ------cchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhh
Confidence 44422 3344444444444444444432 3444444444444444444443 33333221
Q ss_pred ------------CCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEE
Q 007138 433 ------------GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTI 500 (616)
Q Consensus 433 ------------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i 500 (616)
....+.|+.|++.+ +.+++.. +..+.++++|+.|++++|.... .....+.++..|++|++
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c---~p~l~~~~hLKVLhLsyNrL~~----fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLAN-NHLTDSC---FPVLVNFKHLKVLHLSYNRLNS----FPASKLRKLEELEELNL 414 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhc-Ccccccc---hhhhccccceeeeeeccccccc----CCHHHHhchHHhHHHhc
Confidence 11223566666666 5555432 2255667777777777774221 11113456677777777
Q ss_pred ecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-CCc-CCcceEE
Q 007138 501 RGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-GLP-SSLLQLQ 578 (616)
Q Consensus 501 ~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~-~~L~~L~ 578 (616)
+|| +++.++.... .+..|++|...+ +.+...| .+.+++.|+.+|++. |+|+.+-.. ..+ |+|++|+
T Consensus 415 SGN--kL~~Lp~tva-------~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 415 SGN--KLTTLPDTVA-------NLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred ccc--hhhhhhHHHH-------hhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence 776 7777776653 567777777766 5677777 666777778888774 777764442 334 6788888
Q ss_pred EcCCch
Q 007138 579 IYCCPL 584 (616)
Q Consensus 579 i~~c~~ 584 (616)
++|+++
T Consensus 483 lSGN~~ 488 (1081)
T KOG0618|consen 483 LSGNTR 488 (1081)
T ss_pred ccCCcc
Confidence 887764
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-21 Score=194.37 Aligned_cols=369 Identities=15% Similarity=0.217 Sum_probs=271.3
Q ss_pred CCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCC
Q 007138 134 GPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCE 213 (616)
Q Consensus 134 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 213 (616)
+.+|.....++.+.-+.+..... ...++-++.+.+|++|.++.+. +..+.. .+..+ +.|+.+.+..|.
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~-L~~vhG-----ELs~L----p~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQ-LISVHG-----ELSDL----PRLRSVIVRDNN 89 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhh-hHhhhh-----hhccc----hhhHHHhhhccc
Confidence 45666655555544443333332 1344556899999999998854 444433 36666 889999998876
Q ss_pred CCc-ccccccCCCCCccEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccc
Q 007138 214 GLV-KLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI 291 (616)
Q Consensus 214 ~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 291 (616)
.-. .+|..+-++..|..|++++| .++..| .+....++-.|++++|. ++.||.... .++..|-.|+++++ .++.+
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~N-rLe~L 165 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSNN-RLEML 165 (1255)
T ss_pred cccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhccccc-hhhhc
Confidence 533 68888889999999999998 588888 45568899999999887 777876543 56678888899875 46666
Q ss_pred ccc-CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEE
Q 007138 292 AAV-QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 370 (616)
Q Consensus 292 ~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L 370 (616)
|+. ..+..|+.|.+++++ +..+.+. ....++.|+.|.+++-+.- ...+|.++..+ .+|..+
T Consensus 166 PPQ~RRL~~LqtL~Ls~NP-L~hfQLr------QLPsmtsL~vLhms~TqRT-----l~N~Ptsld~l------~NL~dv 227 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNP-LNHFQLR------QLPSMTSLSVLHMSNTQRT-----LDNIPTSLDDL------HNLRDV 227 (1255)
T ss_pred CHHHHHHhhhhhhhcCCCh-hhHHHHh------cCccchhhhhhhcccccch-----hhcCCCchhhh------hhhhhc
Confidence 654 556688899998884 2222111 1122566777777773322 25677888777 899999
Q ss_pred EecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccc
Q 007138 371 YVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRL 450 (616)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 450 (616)
+++.| .+..+|..+..+++|+.|++++|. ++.+....+...+|+.|.++.| .+..+|.....++.|+.|.+.+ +.+
T Consensus 228 DlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL 303 (1255)
T KOG0444|consen 228 DLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKL 303 (1255)
T ss_pred ccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-Ccc
Confidence 99987 556688889999999999999976 6667666777889999999998 7889998887778999999888 566
Q ss_pred c-cchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccce
Q 007138 451 E-GGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTT 529 (616)
Q Consensus 451 ~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~ 529 (616)
+ ..+|. .++++.+|+.+..++|..+. .++++..+++|++|.++.| .+..+|..+ ..++.|++
T Consensus 304 ~FeGiPS---GIGKL~~Levf~aanN~LEl-----VPEglcRC~kL~kL~L~~N--rLiTLPeaI-------HlL~~l~v 366 (1255)
T KOG0444|consen 304 TFEGIPS---GIGKLIQLEVFHAANNKLEL-----VPEGLCRCVKLQKLKLDHN--RLITLPEAI-------HLLPDLKV 366 (1255)
T ss_pred cccCCcc---chhhhhhhHHHHhhcccccc-----CchhhhhhHHHHHhccccc--ceeechhhh-------hhcCCcce
Confidence 4 23343 67889999999999887543 5678899999999999986 788888876 47899999
Q ss_pred EecccCccccccccccccCccccEEEec
Q 007138 530 LWISRFPNLERLSSSIVDLQNLTELVLV 557 (616)
Q Consensus 530 L~l~~c~~l~~i~~~~~~~~~L~~L~l~ 557 (616)
||+..++++..=|.--..-++|+.-+|.
T Consensus 367 LDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred eeccCCcCccCCCCcchhhhcceeeecc
Confidence 9999999988765422222455544443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-22 Score=192.12 Aligned_cols=477 Identities=20% Similarity=0.207 Sum_probs=218.9
Q ss_pred CcceEeeccCCCcccccC--CCCCCccEEeecCCc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCC
Q 007138 51 KLRELHIISCSKLQGTFP--EHLPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDT 126 (616)
Q Consensus 51 ~L~~L~l~~c~~l~~~~p--~~~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (616)
.|+.+.++.+. +.-..+ ..++.|.+|++.++. .++++++++..++.++++++.....+.. +++...+.+.+.
T Consensus 46 ~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~---i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHND-LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ---IGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCc-hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH---Hhhhhhhhhhhc
Confidence 45666666654 221122 235566677776665 3456677777777777777765543321 111111111111
Q ss_pred CcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcE
Q 007138 127 SNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEY 206 (616)
Q Consensus 127 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~ 206 (616)
..+.. .+++.++..+-.+...+-.++.. ...++.+.++.+|..+++.++. ++.+++. .+. + ..|++
T Consensus 122 s~n~~--~el~~~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~-l~~l~~~----~i~-m----~~L~~ 187 (565)
T KOG0472|consen 122 SSNEL--KELPDSIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNK-LKALPEN----HIA-M----KRLKH 187 (565)
T ss_pred cccce--eecCchHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhccccc-hhhCCHH----HHH-H----HHHHh
Confidence 11100 12223333333333333333332 1333444555555555555533 4444433 122 3 55666
Q ss_pred EEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCC
Q 007138 207 LRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR 286 (616)
Q Consensus 207 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 286 (616)
||...|-. +.+|+.++.+.+|+-|+++.| ++..+|++..+..|++++++.|. ++-++... +..++++..|++.++
T Consensus 188 ld~~~N~L-~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~-i~~lpae~-~~~L~~l~vLDLRdN- 262 (565)
T KOG0472|consen 188 LDCNSNLL-ETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQ-IEMLPAEH-LKHLNSLLVLDLRDN- 262 (565)
T ss_pred cccchhhh-hcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccH-HHhhHHHH-hcccccceeeecccc-
Confidence 66665433 566666777777777777665 46666666666667777666654 44444332 134566666666654
Q ss_pred CCcccccc-CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcc--c-ccccCCCccccccccc--
Q 007138 287 SLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLT--C-IFSKNELPATLESLEV-- 360 (616)
Q Consensus 287 ~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~-~~~~~~~~~~l~~l~~-- 360 (616)
+++..|.. ..+++|+.|+++++ .++.+ |...+. + .|+.|.+.+.+--+ . +.. +.....++.+.-
T Consensus 263 klke~Pde~clLrsL~rLDlSNN-~is~L--p~sLgn-----l-hL~~L~leGNPlrTiRr~ii~-~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 263 KLKEVPDEICLLRSLERLDLSNN-DISSL--PYSLGN-----L-HLKFLALEGNPLRTIRREIIS-KGTQEVLKYLRSKI 332 (565)
T ss_pred ccccCchHHHHhhhhhhhcccCC-ccccC--Cccccc-----c-eeeehhhcCCchHHHHHHHHc-ccHHHHHHHHHHhh
Confidence 35555544 33455666666665 45544 433333 2 34555444422100 0 000 000000000000
Q ss_pred -CCCCCcccEEEecCCC-CchhhhhhccCCCCccEEEccccccccccccccc---CCCCCcEEEeccCCCCcccCCCCCC
Q 007138 361 -GNLPPSLKSLYVYGCS-KLESIAERLDNNTSLETISIERCGNLKILPSGLH---NLRQLQGIKIWNCGNLVSFPEGGLP 435 (616)
Q Consensus 361 -~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~ 435 (616)
..-+.+-+.=.-..-. .-+.+| .....-+.+.|++++ ..++.+|.... .-.-....+++.| .+..+|.....
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~ 409 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVE 409 (565)
T ss_pred ccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHH
Confidence 0000000000000000 000000 111122444455544 23444444221 1112344555554 34444443322
Q ss_pred CCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccccccccc
Q 007138 436 CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDK 515 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~ 515 (616)
+..+.+.-+...+.+ +-+|. .+..+++|..|++++|.... .+..+..+..|+.|+|+.| ....+|....
T Consensus 410 lkelvT~l~lsnn~i-sfv~~---~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~N--rFr~lP~~~y 478 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKI-SFVPL---ELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFN--RFRMLPECLY 478 (565)
T ss_pred HHHHHHHHHhhcCcc-ccchH---HHHhhhcceeeecccchhhh-----cchhhhhhhhhheeccccc--ccccchHHHh
Confidence 212221111121222 22222 33444455555555553211 1123345556777777775 5666666542
Q ss_pred ccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCc
Q 007138 516 RLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCP 583 (616)
Q Consensus 516 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 583 (616)
.+..++.+-.++ ++++++++ ++..+.+|++|++++ +.++.+|+. +.+.+|++|+++|+|
T Consensus 479 -------~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 479 -------ELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -------hHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 233344443443 66777766 377777777888777 777777774 567777778777776
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-20 Score=177.46 Aligned_cols=458 Identities=20% Similarity=0.213 Sum_probs=258.0
Q ss_pred ccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCce
Q 007138 47 EWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSV 121 (616)
Q Consensus 47 ~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 121 (616)
.++..|.+|++.+.. +. .+|. .+.+++.++++.+. .++..+...+.|+.++.+++.....+.. ++....+
T Consensus 65 ~nL~~l~vl~~~~n~-l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~---i~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNK-LS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS---IGRLLDL 139 (565)
T ss_pred hcccceeEEEeccch-hh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch---HHHHhhh
Confidence 446666666666654 33 3443 23344555555544 3345555566666666665554442221 1111111
Q ss_pred eecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhcc
Q 007138 122 VCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELS 201 (616)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~ 201 (616)
...+..++-. .++|..+.++..+...+...+.. .+.++.... |+.|++|+...+ -++.+|+. ++.+
T Consensus 140 ~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~-m~~L~~ld~~~N-~L~tlP~~-----lg~l---- 205 (565)
T KOG0472|consen 140 EDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNKL-KALPENHIA-MKRLKHLDCNSN-LLETLPPE-----LGGL---- 205 (565)
T ss_pred hhhhcccccc--ccCchHHHHHHHHHHhhccccch-hhCCHHHHH-HHHHHhcccchh-hhhcCChh-----hcch----
Confidence 1111111111 13455556666665555555544 234555544 999999987664 36777765 6777
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC-C-CCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-V-ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
.+|..|++..|+. ..+| .|..|..|++|++..| .++.+|. . ..++++..|++.+|+ +++.|... .-+.+|+.
T Consensus 206 ~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~--clLrsL~r 279 (565)
T KOG0472|consen 206 ESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI--CLLRSLER 279 (565)
T ss_pred hhhHHHHhhhccc-ccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccc-cccCchHH--HHhhhhhh
Confidence 8899999999876 6888 6899999999999987 5887873 3 359999999999987 88888764 34477999
Q ss_pred EEeccCCCCcccccc-CCCCCccEEEEecCCCCCccccccc-ccccccccCCCccEEec-cCCCCccc---------ccc
Q 007138 280 LSIHGCRSLTYIAAV-QLPPSLKQLSISDCDNIRTLTVEEG-IQSSRRYTSCLLEHLDI-SSCPSLTC---------IFS 347 (616)
Q Consensus 280 L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~L~~L~l-~~c~~l~~---------~~~ 347 (616)
|+++++. +..++.. +.. .|+.|.+.+++ ++.+ ... +..++. .-|++|.= ..|..+.. ..+
T Consensus 280 LDlSNN~-is~Lp~sLgnl-hL~~L~leGNP-lrTi--Rr~ii~~gT~---~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 280 LDLSNND-ISSLPYSLGNL-HLKFLALEGNP-LRTI--RREIISKGTQ---EVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hcccCCc-cccCCcccccc-eeeehhhcCCc-hHHH--HHHHHcccHH---HHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 9999754 6666544 444 77778777774 3332 110 000000 01222210 00111110 001
Q ss_pred cCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCC---CCccEEEcccccccccccccccCCCCCcEEEeccCC
Q 007138 348 KNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNN---TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCG 424 (616)
Q Consensus 348 ~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~ 424 (616)
.+.+|..-.. -+.+.|++++- ....+|...... .-.+.++++.|. +.++|..+..++.+...-+..+.
T Consensus 352 ~~~~~~~~~~-------i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 352 SESFPDIYAI-------ITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred CCcccchhhh-------hhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcC
Confidence 1112111000 23445555543 233344332221 235666776654 55566655555554443333333
Q ss_pred CCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCC
Q 007138 425 NLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD 504 (616)
Q Consensus 425 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 504 (616)
.+..+|......++|..|++++ +-+.+ +|. .++.+..|+.++++.|. +..-++.+..+.-|+.+-.++|
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~N-N~Ln~-LP~---e~~~lv~Lq~LnlS~Nr-----Fr~lP~~~y~lq~lEtllas~n- 491 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSN-NLLND-LPE---EMGSLVRLQTLNLSFNR-----FRMLPECLYELQTLETLLASNN- 491 (565)
T ss_pred ccccchHHHHhhhcceeeeccc-chhhh-cch---hhhhhhhhheecccccc-----cccchHHHhhHHHHHHHHhccc-
Confidence 4444454444555666666665 33332 332 34455556777776663 1112222223334555555544
Q ss_pred CccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+..++..+ ...+..|.+||+.+ +.+..+|+.++++++|++|++.| +.++ .|.
T Consensus 492 -qi~~vd~~~------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~g-Npfr-~Pr 544 (565)
T KOG0472|consen 492 -QIGSVDPSG------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDG-NPFR-QPR 544 (565)
T ss_pred -cccccChHH------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecC-CccC-CCH
Confidence 777777763 24789999999998 78999999999999999999999 5555 454
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=147.73 Aligned_cols=258 Identities=28% Similarity=0.360 Sum_probs=146.9
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+-..|+++++.. +.+|..+. ++|+.|.+.+| .++.+|. .+++|++|++++|. ++.+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l-----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL-----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-----ccccceee
Confidence 4567888888754 67887664 47888888886 5777775 36788888888774 6666532 25677777
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++. +..++. .+++|+.|+++++ +++.+ |.. .++|++|++++ +.++. .+. +
T Consensus 269 Ls~N~-L~~Lp~--lp~~L~~L~Ls~N-~Lt~L--P~~--------p~~L~~LdLS~-N~L~~-Lp~--l---------- 320 (788)
T PRK15387 269 IFSNP-LTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------PPGLQELSVSD-NQLAS-LPA--L---------- 320 (788)
T ss_pred ccCCc-hhhhhh--chhhcCEEECcCC-ccccc--ccc--------ccccceeECCC-Ccccc-CCC--C----------
Confidence 77653 444442 3456777777666 44444 321 23566666666 23332 110 1
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceE
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRR 441 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 441 (616)
|.+|+.|++++|.. ..+|.. ..+|+.|++++|. ++.+|.. .++|+.|++++| .+..+|... .+|+.
T Consensus 321 --p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~l~---~~L~~ 386 (788)
T PRK15387 321 --PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNN-RLTSLPALP---SGLKE 386 (788)
T ss_pred --cccccccccccCcc-cccccc---ccccceEecCCCc-cCCCCCC---Ccccceehhhcc-ccccCcccc---cccce
Confidence 13455555555432 233321 1256666665543 3344432 234555555554 344444321 14555
Q ss_pred EEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCC
Q 007138 442 LDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTAL 521 (616)
Q Consensus 442 L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~ 521 (616)
|++++ +.+++. | ...++|+.|++++| .+..+|.
T Consensus 387 LdLs~-N~Lt~L-P----------------------------------~l~s~L~~LdLS~N--~LssIP~--------- 419 (788)
T PRK15387 387 LIVSG-NRLTSL-P----------------------------------VLPSELKELMVSGN--RLTSLPM--------- 419 (788)
T ss_pred EEecC-CcccCC-C----------------------------------CcccCCCEEEccCC--cCCCCCc---------
Confidence 55555 334321 1 11246777777775 5666654
Q ss_pred CCCCccceEecccCccccccccccccCccccEEEecCCCCCc
Q 007138 522 PLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 563 (616)
.+.+|+.|++++ ++++.+|..+..+++|+.|++++ |.+.
T Consensus 420 -l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~-N~Ls 458 (788)
T PRK15387 420 -LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEG-NPLS 458 (788)
T ss_pred -chhhhhhhhhcc-CcccccChHHhhccCCCeEECCC-CCCC
Confidence 235677777777 56777777777778888888887 4443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=139.62 Aligned_cols=255 Identities=27% Similarity=0.336 Sum_probs=149.6
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEE
Q 007138 226 SSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSI 305 (616)
Q Consensus 226 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 305 (616)
.+-..|+++++ .++.+|. ...++|+.|++.+|. ++.+|.. .++|++|+++++ .++.++. .+++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC-----CCCCcEEEecCC-ccCcccC--cccccceeec
Confidence 45667888887 5777875 235689999998876 6666642 367888888775 4665552 3457777777
Q ss_pred ecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhc
Q 007138 306 SDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL 385 (616)
Q Consensus 306 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (616)
+++ .+..+ +.. ..+|+.|+++++ +++. + |.. |++|+.|++++|... .+|..
T Consensus 270 s~N-~L~~L--p~l--------p~~L~~L~Ls~N-~Lt~-L-----P~~---------p~~L~~LdLS~N~L~-~Lp~l- 320 (788)
T PRK15387 270 FSN-PLTHL--PAL--------PSGLCKLWIFGN-QLTS-L-----PVL---------PPGLQELSVSDNQLA-SLPAL- 320 (788)
T ss_pred cCC-chhhh--hhc--------hhhcCEEECcCC-cccc-c-----ccc---------ccccceeECCCCccc-cCCCC-
Confidence 666 34443 221 134556666552 3332 1 110 044555555554222 23321
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..+|+.|++++|. ++.+|.. ..+|+.|++++| .+..+|.. . .+|+.|++++ +.++.+ |
T Consensus 321 --p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l-p--~~L~~L~Ls~-N~L~~L-P---------- 378 (788)
T PRK15387 321 --PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPTL-P--SELYKLWAYN-NRLTSL-P---------- 378 (788)
T ss_pred --cccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCCC-C--cccceehhhc-cccccC-c----------
Confidence 1234445554433 2333321 124455555444 33334321 1 1344444443 233221 1
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI 545 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 545 (616)
....+|+.|++++| .++.+|. .+++|+.|++++ +.++.+|..
T Consensus 379 ------------------------~l~~~L~~LdLs~N--~Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l- 420 (788)
T PRK15387 379 ------------------------ALPSGLKELIVSGN--RLTSLPV----------LPSELKELMVSG-NRLTSLPML- 420 (788)
T ss_pred ------------------------ccccccceEEecCC--cccCCCC----------cccCCCEEEccC-CcCCCCCcc-
Confidence 11247899999987 6777765 357899999999 568888853
Q ss_pred ccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCc
Q 007138 546 VDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCP 583 (616)
Q Consensus 546 ~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 583 (616)
...|+.|++++ |.++.+|.. ..+++|+.|++++++
T Consensus 421 --~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 --PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 35789999999 889999974 347899999999986
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=139.11 Aligned_cols=95 Identities=25% Similarity=0.393 Sum_probs=42.7
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++|+.|++++|.. +.+|..+. .+|+.|++++| .++.+|. ....+|+.|++++|. +..+|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~----s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSN-QLTSIPA-TLPDTIQEMELSINR-ITELPERLP----SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCC-ccccCCh-hhhccccEEECcCCc-cCcCChhHh----CCCCEEE
Confidence 4455555555543 44554332 35555555554 3444442 123455555555554 334443321 2455555
Q ss_pred eccCCCCccccccCCCCCccEEEEecC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDC 308 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~ 308 (616)
++++ .+..++. ..+++|+.|++++|
T Consensus 269 Ls~N-~L~~LP~-~l~~sL~~L~Ls~N 293 (754)
T PRK15370 269 LFHN-KISCLPE-NLPEELRYLSVYDN 293 (754)
T ss_pred CcCC-ccCcccc-ccCCCCcEEECCCC
Confidence 5432 2333332 12234555555444
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-14 Score=135.74 Aligned_cols=269 Identities=21% Similarity=0.277 Sum_probs=127.2
Q ss_pred CCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 138 PRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
..++++++|.+.+|.+.+. .....+...+++|++|++..|..++.. .+..+.+.|++|++|++++|+.+..
T Consensus 161 ~~CpnIehL~l~gc~~iTd--~s~~sla~~C~~l~~l~L~~c~~iT~~-------~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITD--SSLLSLARYCRKLRHLNLHSCSSITDV-------SLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hhCCchhhhhhhcceeccH--HHHHHHHHhcchhhhhhhcccchhHHH-------HHHHHHHhhhhHHHhhhccCchhhc
Confidence 4455555555555554432 223334455555555555555555542 3444455555555555555554332
Q ss_pred --cccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-
Q 007138 218 --LPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV- 294 (616)
Q Consensus 218 --~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~- 294 (616)
+-....++..++.+...|| ..++.-....+...++.+..+++..|..+++...+
T Consensus 232 ~gv~~~~rG~~~l~~~~~kGC-----------------------~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLKGC-----------------------LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred CcchHHhccchhhhhhhhccc-----------------------ccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 2222333444444444444 33222211111122233333444444444333322
Q ss_pred --CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEe
Q 007138 295 --QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYV 372 (616)
Q Consensus 295 --~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l 372 (616)
..+..|+.+..++|..+++..+.....+ +++|+.+.+..|.++++. -...+.. +. +.|+.+++
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~-----~~~L~~l~l~~c~~fsd~-~ft~l~r--------n~-~~Le~l~~ 353 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQH-----CHNLQVLELSGCQQFSDR-GFTMLGR--------NC-PHLERLDL 353 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcC-----CCceEEEeccccchhhhh-hhhhhhc--------CC-hhhhhhcc
Confidence 2234445555555554444322222222 455555555555554431 0000100 00 55666666
Q ss_pred cCCCCchh--hhhhccCCCCccEEEcccccccccc-----cccccCCCCCcEEEeccCCCCcccC-CCCCCCCCceEEEc
Q 007138 373 YGCSKLES--IAERLDNNTSLETISIERCGNLKIL-----PSGLHNLRQLQGIKIWNCGNLVSFP-EGGLPCAKLRRLDI 444 (616)
Q Consensus 373 ~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 444 (616)
.+|..... +-....+++.|+++.++.|..++.. ...-..+..|+.+.+++|+.+..-. .....|++|+.+++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 66543321 2233455677777777777655442 2223456677778888877655321 22335667888888
Q ss_pred cCCcccccc
Q 007138 445 SDCKRLEGG 453 (616)
Q Consensus 445 ~~c~~l~~~ 453 (616)
.+|..++..
T Consensus 434 ~~~q~vtk~ 442 (483)
T KOG4341|consen 434 IDCQDVTKE 442 (483)
T ss_pred echhhhhhh
Confidence 887666543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=134.56 Aligned_cols=181 Identities=18% Similarity=0.248 Sum_probs=101.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|... .+|..+. ++|+.|++++| .+..+|..+. ++|+.|++++| .++.+|..... +|+.|++
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~--sL~~L~L 311 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLPS--GITHLNV 311 (754)
T ss_pred ccccEEECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccchh--hHHHHHh
Confidence 45666666665432 4444332 36666666654 3445554332 36666666665 45555543322 5666666
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.++.. |.. -.++|+.|++++|.... .+..+ .++|+.|++++| .+..+|... +
T Consensus 312 s~-N~Lt~L-P~~-----l~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N--~L~~LP~~l---------p 366 (754)
T PRK15370 312 QS-NSLTAL-PET-----LPPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKN--QITVLPETL---------P 366 (754)
T ss_pred cC-CccccC-Ccc-----ccccceeccccCCcccc-----CChhh--cCcccEEECCCC--CCCcCChhh---------c
Confidence 66 345432 211 12456666666654211 01111 257777888775 556666533 4
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-----CCcCCcceEEEcCCc
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-----GLPSSLLQLQIYCCP 583 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~ 583 (616)
++|+.|++++| .+..+|..+. +.|+.|++++ +++..+|.. ...+.+..+++.++|
T Consensus 367 ~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 67888888874 5667775443 3677777777 667776652 123667777777776
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-13 Score=129.49 Aligned_cols=310 Identities=18% Similarity=0.247 Sum_probs=205.2
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccc-
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP- 219 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~- 219 (616)
.-|+.|.+.+|..+.. .....+...++++++|++.+|..+++ ..+..++..|.+|++|++..|..++...
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd-------~s~~sla~~C~~l~~l~L~~c~~iT~~~L 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITD-------SSLLSLARYCRKLRHLNLHSCSSITDVSL 208 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccH-------HHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence 5688899999988765 35566778899999999999988776 4677888888999999999988877432
Q ss_pred -cccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc---C
Q 007138 220 -QSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV---Q 295 (616)
Q Consensus 220 -~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~ 295 (616)
.....+++|++|+++.|+.+++- + ++.+. .+...++.+..++|...+.-... .
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~-------g-----------v~~~~-----rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGN-------G-----------VQALQ-----RGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcC-------c-----------chHHh-----ccchhhhhhhhcccccccHHHHHHHhc
Confidence 22345888888888888755441 0 11110 22333555655677544332111 3
Q ss_pred CCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCC
Q 007138 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGC 375 (616)
Q Consensus 296 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~ 375 (616)
...-+..+++..|..+++..+....- .+..|+.++.++|..+++ .+...+-. .. ++|+.+.++.|
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~-----~c~~lq~l~~s~~t~~~d-~~l~aLg~---~~------~~L~~l~l~~c 330 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIAC-----GCHALQVLCYSSCTDITD-EVLWALGQ---HC------HNLQVLELSGC 330 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhh-----hhhHhhhhcccCCCCCch-HHHHHHhc---CC------CceEEEecccc
Confidence 44567777788898888763222212 256799999999998876 33222211 11 78999999999
Q ss_pred CCchhh--hhhccCCCCccEEEccccccccc--ccccccCCCCCcEEEeccCCCCccc-----CCCCCCCCCceEEEccC
Q 007138 376 SKLESI--AERLDNNTSLETISIERCGNLKI--LPSGLHNLRQLQGIKIWNCGNLVSF-----PEGGLPCAKLRRLDISD 446 (616)
Q Consensus 376 ~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~--~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~ 446 (616)
...... .....+++.|+.+++.+|..... +-..-.+++.|+.|.++.|..++.- ....-....|+.+.+++
T Consensus 331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence 865443 22345678999999999875543 2223358999999999988765533 12112335899999999
Q ss_pred CcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEec
Q 007138 447 CKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 447 c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
|+.+++.. ...+.++++|+.+++-++....... ......++|+++...+..
T Consensus 411 ~p~i~d~~---Le~l~~c~~Leri~l~~~q~vtk~~--i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 411 CPLITDAT---LEHLSICRNLERIELIDCQDVTKEA--ISRFATHLPNIKVHAYFA 461 (483)
T ss_pred CCCchHHH---HHHHhhCcccceeeeechhhhhhhh--hHHHHhhCccceehhhcc
Confidence 99887753 3477888999999988876332110 011224567777665543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-12 Score=109.88 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=120.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
..+..|.++++ .+..+|+.+..+.+|+.|++++|. ++++|..+..+++|+.|.++-| .+...|.+...++.|+.||+
T Consensus 33 s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 55667777776 445677788888899999998755 7888888999999999998765 66778888777788999999
Q ss_pred cCCcccc-cchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 445 SDCKRLE-GGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 445 ~~c~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
.+ +++. ..+|. .|..+.-|+.|++++| ..+.+|...+ .
T Consensus 110 ty-nnl~e~~lpg-------------------------------nff~m~tlralyl~dn--dfe~lp~dvg-------~ 148 (264)
T KOG0617|consen 110 TY-NNLNENSLPG-------------------------------NFFYMTTLRALYLGDN--DFEILPPDVG-------K 148 (264)
T ss_pred cc-cccccccCCc-------------------------------chhHHHHHHHHHhcCC--CcccCChhhh-------h
Confidence 88 4443 33332 3445566777777765 5667777664 5
Q ss_pred CCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC
Q 007138 524 PASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
+++|+.|.+.+ +.+-++|..++.++.|++|+|++ ++++-+|++
T Consensus 149 lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 149 LTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred hcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecChh
Confidence 78888888888 66778888888899999999998 888887773
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-11 Score=121.52 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=17.6
Q ss_pred hcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 461 LHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 461 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
+..+.+|+.|++++|.....+.......+..+++|++|++++|
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3444455555555544222111111112233345555555553
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.5e-10 Score=124.25 Aligned_cols=252 Identities=22% Similarity=0.266 Sum_probs=146.5
Q ss_pred CCCCCCCcEEEecCCCC-cccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCC
Q 007138 137 KPRIPKLEELEIKNIEN-ETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGL 215 (616)
Q Consensus 137 ~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 215 (616)
....++|+.|-+.+-.. .. ....++|..++.|+.||+++|..+..+|.. ++.+ -+||+|+++++..
T Consensus 541 ~~~~~~L~tLll~~n~~~l~---~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~I- 607 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLL---EISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTGI- 607 (889)
T ss_pred CCCCCccceEEEeecchhhh---hcCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCCc-
Confidence 35566888888876542 22 267778999999999999999988888876 8888 8999999999664
Q ss_pred cccccccCCCCCccEEEEcCCCCCCCCCCCCC-CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc
Q 007138 216 VKLPQSSLSLSSLREIEICKCSSLVSFPEVAL-PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV 294 (616)
Q Consensus 216 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 294 (616)
..+|..+++++.|.+|++..+..+..++.+.. +++||+|.+.....-.+.........+.+|+.+....... ..+...
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l 686 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDL 686 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhh
Confidence 79999999999999999999877777765544 9999999997654111111110113335555555543222 111111
Q ss_pred CCCCCc----cEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEE
Q 007138 295 QLPPSL----KQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSL 370 (616)
Q Consensus 295 ~~~~~L----~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L 370 (616)
...+.| +.+.+.++.. ... ..... .+.+|+.|.+.+|........ .. .....+. .+ +++..+
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~-~~~--~~~~~-----~l~~L~~L~i~~~~~~e~~~~--~~-~~~~~~~--~f-~~l~~~ 752 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSK-RTL--ISSLG-----SLGNLEELSILDCGISEIVIE--WE-ESLIVLL--CF-PNLSKV 752 (889)
T ss_pred hhhHHHHHHhHhhhhccccc-cee--ecccc-----cccCcceEEEEcCCCchhhcc--cc-cccchhh--hH-HHHHHH
Confidence 111122 2222222211 111 12222 367899999998876542110 00 0000000 00 344444
Q ss_pred EecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcE
Q 007138 371 YVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQG 417 (616)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 417 (616)
.+.+|...... .+..-.++|+.|.+..|..+..+......+..++.
T Consensus 753 ~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 753 SILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred Hhhcccccccc-chhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 45555444322 22233458888888887777665444444444443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-11 Score=120.11 Aligned_cols=210 Identities=18% Similarity=0.140 Sum_probs=109.6
Q ss_pred CcccEEEecCCCCchhhhhhccCC---CCccEEEcccccccc----cccccccCC-CCCcEEEeccCCCCc----ccCCC
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNN---TSLETISIERCGNLK----ILPSGLHNL-RQLQGIKIWNCGNLV----SFPEG 432 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~----~~~~~l~~l-~~L~~L~l~~~~~~~----~~~~~ 432 (616)
++|+.|++++|......+..+..+ ++|+.|++++|.... .+...+..+ ++|+.|++++|.... .+...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 566666666665543333333222 347777777765431 122234455 677777777764221 11112
Q ss_pred CCCCCCceEEEccCCccccc-chhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccc--
Q 007138 433 GLPCAKLRRLDISDCKRLEG-GFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS-- 509 (616)
Q Consensus 433 ~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~-- 509 (616)
...+++|++|++++| .+++ ..+.....+..+++|+.|++++|.....+.......+..+++|++|++++| .+..
T Consensus 161 ~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~ 237 (319)
T cd00116 161 LRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN--NLTDAG 237 (319)
T ss_pred HHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC--cCchHH
Confidence 223346777777774 3443 222222344555677888887775322222222224566788888888886 2322
Q ss_pred ccccccccCCCCCCCCccceEecccCcccc-----ccccccccCccccEEEecCCCCCcccCCCC------Cc-CCcceE
Q 007138 510 FPLEDKRLGTALPLPASLTTLWISRFPNLE-----RLSSSIVDLQNLTELVLVNCPKLKYFPEKG------LP-SSLLQL 577 (616)
Q Consensus 510 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~------~~-~~L~~L 577 (616)
+......+ ....+.|++|++.+|. ++ .+...+..+++|+.+++++ +.+.+-+... .. +.|+++
T Consensus 238 ~~~l~~~~---~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 238 AAALASAL---LSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred HHHHHHHH---hccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhc
Confidence 11101000 0023688888888864 32 2333455667888888888 5555432210 11 456666
Q ss_pred EEcCC
Q 007138 578 QIYCC 582 (616)
Q Consensus 578 ~i~~c 582 (616)
+|.+.
T Consensus 313 ~~~~~ 317 (319)
T cd00116 313 WVKDD 317 (319)
T ss_pred ccCCC
Confidence 66554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-11 Score=118.51 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 218 (616)
.|..+++|+..+++++.+ ..+.++.|+.+++|..|.+.+...|++++.. .+..| ..|+.|.+.-|...-..
T Consensus 86 aF~~l~~LRrLdLS~N~I-s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~----~F~gL----~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNI-SFIAPDAFKGLASLLSLVLYGNNKITDLPKG----AFGGL----SSLQRLLLNANHINCIR 156 (498)
T ss_pred hccchhhhceecccccch-hhcChHhhhhhHhhhHHHhhcCCchhhhhhh----HhhhH----HHHHHHhcChhhhcchh
Confidence 456666666666666654 3456666777777777777776667777765 35555 56666666665553333
Q ss_pred ccccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCC
Q 007138 219 PQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCD 260 (616)
Q Consensus 219 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~ 260 (616)
...+..+++|..|.+.+| .+..++. +..+..++.+.+..++
T Consensus 157 ~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 445667777777777776 3555542 3336667777766665
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-11 Score=101.30 Aligned_cols=153 Identities=24% Similarity=0.327 Sum_probs=114.7
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..+.+++.|.++.|. +..+|..+..+.+|+.|.+++| .++.+|....+++.|+.|.+.- +++
T Consensus 30 f~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl--------------- 91 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRL--------------- 91 (264)
T ss_pred cchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhh---------------
Confidence 344567777777744 5666667777777777777776 5667776666666677766654 334
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI 545 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 545 (616)
.+.+.+|..+|.|+.|++.+|+..-..+|..+ ..++.|+.|.+++ +..+.+|..+
T Consensus 92 -----------------~~lprgfgs~p~levldltynnl~e~~lpgnf-------f~m~tlralyl~d-ndfe~lp~dv 146 (264)
T KOG0617|consen 92 -----------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNF-------FYMTTLRALYLGD-NDFEILPPDV 146 (264)
T ss_pred -----------------hcCccccCCCchhhhhhccccccccccCCcch-------hHHHHHHHHHhcC-CCcccCChhh
Confidence 22344889999999999999866666777654 4788999999999 7789999999
Q ss_pred ccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCC
Q 007138 546 VDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCC 582 (616)
Q Consensus 546 ~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c 582 (616)
+++++|+.|.++. +.+-++|.+ +.+..|++|+|-|+
T Consensus 147 g~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 147 GKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc
Confidence 9999999999999 888888874 44667777777765
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-09 Score=119.85 Aligned_cols=129 Identities=21% Similarity=0.234 Sum_probs=93.0
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCC-ccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
.....+.+.+.+...... ..-..++.|++|-+.+... +..++. +.+..+ +.|+.||+++|.....
T Consensus 521 ~~~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~~l~~is~----~ff~~m----~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSDWLLEISG----EFFRSL----PLLRVLDLSGNSSLSK 586 (889)
T ss_pred chhheeEEEEeccchhhc------cCCCCCCccceEEEeecchhhhhcCH----HHHhhC----cceEEEECCCCCccCc
Confidence 344556666554333221 1124456788888877653 333322 236666 9999999999999899
Q ss_pred cccccCCCCCccEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEecc
Q 007138 218 LPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHG 284 (616)
Q Consensus 218 ~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 284 (616)
+|..++.+-+|++|+++++ .+..+| .+..+..|.+|++..+..+..++... ..+++|+.|.+..
T Consensus 587 LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPR 651 (889)
T ss_pred CChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchh--hhcccccEEEeec
Confidence 9999999999999999997 688888 55679999999999988777775442 3478899888864
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-11 Score=112.81 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=54.8
Q ss_pred ccCCCcEEEccCCCCCccccc-ccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCC
Q 007138 200 LSCRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSS 276 (616)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 276 (616)
+|+.-..++|..|.+ +.+|+ .|+.+++|+.|++++| .++.|.+ +..+++|-.|-++++.++++++...+ ..+..
T Consensus 65 LP~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~s 141 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSS 141 (498)
T ss_pred CCCcceEEEeccCCc-ccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHH
Confidence 456778889988776 66655 6788999999999987 5666653 33477788888888777888876532 33344
Q ss_pred ccEEEe
Q 007138 277 LEILSI 282 (616)
Q Consensus 277 L~~L~l 282 (616)
++-|.+
T Consensus 142 lqrLll 147 (498)
T KOG4237|consen 142 LQRLLL 147 (498)
T ss_pred HHHHhc
Confidence 444433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-08 Score=99.45 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=83.6
Q ss_pred ccCCCcceEeeccCCCc-cc--ccCCCCCCccEEeecCCcc-----hhhhhcCCCCccEEEeCCCcceeecccccccCCC
Q 007138 47 EWFPKLRELHIISCSKL-QG--TFPEHLPALEMLVIEGCEE-----LLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQ 118 (616)
Q Consensus 47 ~~~~~L~~L~l~~c~~l-~~--~~p~~~~~L~~L~l~~c~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 118 (616)
.++++|+.+.+.+|+-- .+ .....||+++.|+|+++-. +......+|+|+.|+++.|........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-------
Confidence 56888888888887511 01 1223578888888877741 113445688888888888765431110
Q ss_pred CceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhh
Q 007138 119 NSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLC 198 (616)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~ 198 (616)
..-..++.|+.|.+..|.-. |.........+|+|+.|++..+..+...... ..
T Consensus 191 ----------------~~~~~l~~lK~L~l~~CGls---~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-----~~--- 243 (505)
T KOG3207|consen 191 ----------------NTTLLLSHLKQLVLNSCGLS---WKDVQWILLTFPSLEVLYLEANEIILIKATS-----TK--- 243 (505)
T ss_pred ----------------cchhhhhhhheEEeccCCCC---HHHHHHHHHhCCcHHHhhhhcccccceecch-----hh---
Confidence 11124556666666666544 2244444556666666666665322211110 11
Q ss_pred hccCCCcEEEccCCCCCcccc--cccCCCCCccEEEEcCC
Q 007138 199 ELSCRLEYLRLSNCEGLVKLP--QSSLSLSSLREIEICKC 236 (616)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 236 (616)
.++.|+.|+|++|+.++ ++ ...+.++.|+.|+++.|
T Consensus 244 -i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 244 -ILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred -hhhHHhhccccCCcccc-cccccccccccchhhhhcccc
Confidence 12456666666665533 22 23555666666666655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.5e-08 Score=96.08 Aligned_cols=204 Identities=20% Similarity=0.244 Sum_probs=138.9
Q ss_pred CCCCccEEeecCCcc----hhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcE
Q 007138 70 HLPALEMLVIEGCEE----LLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEE 145 (616)
Q Consensus 70 ~~~~L~~L~l~~c~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 145 (616)
.+.+|+++.|.+|+- ...-...|+.++.||++.+-...|.... .+...+++|+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~----------------------~i~eqLp~Le~ 176 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL----------------------KIAEQLPSLEN 176 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH----------------------HHHHhcccchh
Confidence 578899999998872 2235678999999999999887765543 23356777777
Q ss_pred EEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCC
Q 007138 146 LEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSL 225 (616)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l 225 (616)
|.++.-.-... .....-..+++|+.|.++.|. ++ + .++..+...|++|+.|++.+|............+
T Consensus 177 LNls~Nrl~~~---~~s~~~~~l~~lK~L~l~~CG-ls--~-----k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 177 LNLSSNRLSNF---ISSNTTLLLSHLKQLVLNSCG-LS--W-----KDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred cccccccccCC---ccccchhhhhhhheEEeccCC-CC--H-----HHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 77654333222 222233478999999999997 44 2 3466666777999999999996544333345568
Q ss_pred CCccEEEEcCCCCCCCCC---CCCCCCCCcEEEccCCCCccccchhh-----ccCCCCCccEEEeccCCC--CccccccC
Q 007138 226 SSLREIEICKCSSLVSFP---EVALPSKLKNIWISTCDALKSLPEAW-----MCDTNSSLEILSIHGCRS--LTYIAAVQ 295 (616)
Q Consensus 226 ~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~~~~~L~~L~l~~~~~--l~~~~~~~ 295 (616)
..|+.|++++|+. .+++ ..+.++.|+.|+++.|. +.++...- ....+++|+.|++..++. +..+....
T Consensus 246 ~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 246 QTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR 323 (505)
T ss_pred hHHhhccccCCcc-cccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence 8899999999864 4443 55679999999998876 54443211 113459999999987653 33333335
Q ss_pred CCCCccEEEEecC
Q 007138 296 LPPSLKQLSISDC 308 (616)
Q Consensus 296 ~~~~L~~L~l~~~ 308 (616)
..++|+.+.+...
T Consensus 324 ~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 324 TLENLKHLRITLN 336 (505)
T ss_pred ccchhhhhhcccc
Confidence 5567777665443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.1e-07 Score=88.91 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=31.1
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecCCCC-CcccCCCCCcCCcceEEEcCCchhh
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPK-LKYFPEKGLPSSLLQLQIYCCPLIA 586 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~-l~~l~~~~~~~~L~~L~i~~c~~l~ 586 (616)
.+++|++|++.+|..+. +|..+. .+|+.|++..+.. --.++...+++++ .|++.+|..+.
T Consensus 154 LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred cCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence 35667777777666442 332222 4667777665321 1123333445556 66666665443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-08 Score=86.66 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=32.6
Q ss_pred ccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc-ccCccccEEEecCCCCCcccCCC-
Q 007138 491 RFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI-VDLQNLTELVLVNCPKLKYFPEK- 568 (616)
Q Consensus 491 ~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~-~~~~~L~~L~l~~c~~l~~l~~~- 568 (616)
.+.+|++|++++| .++.++.-. .++.|++|++++ +.++++...+ ..+|+|++|++++ |+++++...
T Consensus 40 ~l~~L~~L~Ls~N--~I~~l~~l~--------~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~ 107 (175)
T PF14580_consen 40 TLDKLEVLDLSNN--QITKLEGLP--------GLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELE 107 (175)
T ss_dssp T-TT--EEE-TTS----S--TT------------TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCG
T ss_pred hhcCCCEEECCCC--CCccccCcc--------ChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhH
Confidence 4567777777776 566655433 467777777777 5677775443 3577777777777 777666553
Q ss_pred --CCcCCcceEEEcCCchh
Q 007138 569 --GLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 569 --~~~~~L~~L~i~~c~~l 585 (616)
..+++|++|++.++|-.
T Consensus 108 ~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGGG-TT--EEE-TT-GGG
T ss_pred HHHcCCCcceeeccCCccc
Confidence 22577777777777743
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-09 Score=96.51 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=33.0
Q ss_pred CcccEEEecCCCCch-hhhhhccCCCCccEEEccccccccc-ccccccCCCCCcEEEeccC
Q 007138 365 PSLKSLYVYGCSKLE-SIAERLDNNTSLETISIERCGNLKI-LPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~l~~l~~L~~L~l~~~ 423 (616)
|++.+|++++|..+. .....+..++.|++|.++.|+.+.- -...+...|+|.+|++.+|
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 455555555554332 2233455666777777777765321 1113466777777777766
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-08 Score=91.20 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc---CCCCCccEEEEecCCC-CCccccccccccc
Q 007138 248 PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV---QLPPSLKQLSISDCDN-IRTLTVEEGIQSS 323 (616)
Q Consensus 248 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~ 323 (616)
-.+|+.++++.|.+++.........++..|.+|+++.|......... ...++|+.|++++|.+ +..-++.....
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~-- 310 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR-- 310 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH--
Confidence 33444444444444444443333344555666666655433322111 3445677777777642 21111122222
Q ss_pred ccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhh---hccCCCCccEEEccccc
Q 007138 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAE---RLDNNTSLETISIERCG 400 (616)
Q Consensus 324 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 400 (616)
.+++|.+|++++|..++. + ....+-.+ +.|++|.++.|..+. |. .+...|.|..|++.+|-
T Consensus 311 ---rcp~l~~LDLSD~v~l~~----~-~~~~~~kf------~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 ---RCPNLVHLDLSDSVMLKN----D-CFQEFFKF------NYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---hCCceeeeccccccccCc----h-HHHHHHhc------chheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 377888888888877765 1 11111111 778888888886542 32 35567888999988876
Q ss_pred ccccccccccCCCCCc
Q 007138 401 NLKILPSGLHNLRQLQ 416 (616)
Q Consensus 401 ~l~~~~~~l~~l~~L~ 416 (616)
..+........+++|+
T Consensus 375 sdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 375 SDTTMELLKEMLSHLK 390 (419)
T ss_pred CchHHHHHHHhCcccc
Confidence 5544432334455544
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5e-08 Score=98.02 Aligned_cols=189 Identities=21% Similarity=0.213 Sum_probs=132.5
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCC
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDC 447 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c 447 (616)
...+++.|.+ ..+|..+..|..|+.+.++.|. +..+|..+.++..|+.++++.| .+..+|.....+ -|+.+-+++
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sN- 152 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSN- 152 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEec-
Confidence 3445555533 3466666666677777777644 6677888888888888888877 567777777666 588888877
Q ss_pred cccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCcc
Q 007138 448 KRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASL 527 (616)
Q Consensus 448 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L 527 (616)
++++...+ .++...+|..||.+.|.... .+.-+..+.+|+.|.+..| .+..+|.+. ..-.|
T Consensus 153 Nkl~~lp~----~ig~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn--~l~~lp~El--------~~LpL 213 (722)
T KOG0532|consen 153 NKLTSLPE----EIGLLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRN--HLEDLPEEL--------CSLPL 213 (722)
T ss_pred CccccCCc----ccccchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhh--hhhhCCHHH--------hCCce
Confidence 66765433 34566788888888776332 2234567788888888876 777888776 34568
Q ss_pred ceEecccCccccccccccccCccccEEEecCCCCCcccCC----CCCcCCcceEEEcCC
Q 007138 528 TTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE----KGLPSSLLQLQIYCC 582 (616)
Q Consensus 528 ~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~i~~c 582 (616)
..||++. +++..||..+.++..|++|-+.+ |-|++=|. .+...-.++|++.-|
T Consensus 214 i~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 8888885 78999998899999999999987 77777544 233344556666555
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7e-07 Score=82.83 Aligned_cols=126 Identities=18% Similarity=0.233 Sum_probs=70.8
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
..|+++++++| .+..+..+..-.|.++.|+++.|.. ..+. .+..+++|.+|++++| .+..+......+.+.+.|.+
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i-~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRI-RTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccce-eeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 56777777776 3444555555566777888877653 3332 2667777788888776 44444333333446677777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
+. +.+. ..+.++++-+|..||+++|.++. .....++.++|.|+++.+.+|
T Consensus 360 a~-N~iE-----~LSGL~KLYSLvnLDl~~N~Ie~---ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQ-NKIE-----TLSGLRKLYSLVNLDLSSNQIEE---LDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hh-hhHh-----hhhhhHhhhhheeccccccchhh---HHHhcccccccHHHHHhhcCC
Confidence 66 3442 23455566666666666665332 112234455555555555553
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-06 Score=77.90 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCCcEEEccCCCCCcccccccC-CCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSL-SLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEIL 280 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 280 (616)
.++++|++.+|.. ..+. .++ .+.+|+.|++++| .++.++.+..++.|++|++++|. ++++...+. ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I-~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~-~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQI-STIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD-KNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-HH-TT--EE
T ss_pred ccccccccccccc-cccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH-HhCCcCCEE
Confidence 3466666666554 3332 343 3566666666666 45556555556666666666665 445533211 234666666
Q ss_pred EeccCCCCcccc---ccCCCCCccEEEEecCC
Q 007138 281 SIHGCRSLTYIA---AVQLPPSLKQLSISDCD 309 (616)
Q Consensus 281 ~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~ 309 (616)
+++++. +.++. ....+++|+.|++.+++
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 666532 33222 22345566666666653
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8e-07 Score=82.43 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=20.9
Q ss_pred CCCccEEeecCCc--chhhhhcCCCCccEEEeCCCccee
Q 007138 71 LPALEMLVIEGCE--ELLVSVASLPALCKFEIGGCKKVV 107 (616)
Q Consensus 71 ~~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~ 107 (616)
|.+|+.+.++.|+ .+......-|.|+++.+.......
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~ 251 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD 251 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeecccccc
Confidence 4556666666665 233334445666776666555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.7e-05 Score=79.28 Aligned_cols=139 Identities=26% Similarity=0.438 Sum_probs=84.7
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..+.+++.|++++| .++.+|. --++|++|.+++|..+..+|..... +|++|++++|..+... |
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~--nLe~L~Ls~Cs~L~sL-P---------- 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPE--GLEKLTVCHCPEISGL-P---------- 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhh--hhhheEccCccccccc-c----------
Confidence 34567778888877 4666662 1235778888777777666654333 7888888877655321 1
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI 545 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 545 (616)
+.|+.|++.++ ....++. .+++|+.|.+.+++.....+...
T Consensus 112 ---------------------------~sLe~L~L~~n--~~~~L~~----------LPssLk~L~I~~~n~~~~~~lp~ 152 (426)
T PRK15386 112 ---------------------------ESVRSLEIKGS--ATDSIKN----------VPNGLTSLSINSYNPENQARIDN 152 (426)
T ss_pred ---------------------------cccceEEeCCC--CCccccc----------CcchHhheecccccccccccccc
Confidence 34677777543 2223322 46678888886533221111000
Q ss_pred ccCccccEEEecCCCCCcccCCCCCcCCcceEEEcCC
Q 007138 546 VDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCC 582 (616)
Q Consensus 546 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 582 (616)
.--++|++|.+.+|..+. +| ..++.+|+.|.++.+
T Consensus 153 ~LPsSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 153 LISPSLKTLSLTGCSNII-LP-EKLPESLQSITLHIE 187 (426)
T ss_pred ccCCcccEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence 112689999999988653 44 346789999999865
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.5e-07 Score=85.02 Aligned_cols=189 Identities=17% Similarity=0.131 Sum_probs=85.7
Q ss_pred CcccEEEecCCCCchhhh----hhccCCCCccEEEcccccccccc-------------cccccCCCCCcEEEeccCCCCc
Q 007138 365 PSLKSLYVYGCSKLESIA----ERLDNNTSLETISIERCGNLKIL-------------PSGLHNLRQLQGIKIWNCGNLV 427 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~-------------~~~l~~l~~L~~L~l~~~~~~~ 427 (616)
|.|++++|++|-+-...+ ..+.++.+|++|.+.+|..-..- ..-...-++|+.+....|. +.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-le 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cc
Confidence 477777777765433222 22445667777777776532211 0112234566666665552 22
Q ss_pred ccCCC-----CCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEec
Q 007138 428 SFPEG-----GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 428 ~~~~~-----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
..+.. ...++.|+.+.+.+...-..........+..+++|+.||+.+|.....+...-...+..+++|++|.+.+
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 22211 1122456666665521111111111124556666666666666533333333333455556666666666
Q ss_pred CCCccccccccccccCCCCCCCCccceEecccCccccc-----cccccccCccccEEEecC
Q 007138 503 CDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLER-----LSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----i~~~~~~~~~L~~L~l~~ 558 (616)
|.-.-.........+.. ..|+|++|.+.+| .++. +...+...|.|+.|++.+
T Consensus 251 cll~~~Ga~a~~~al~~---~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKE---SAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred cccccccHHHHHHHHhc---cCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 42111111110000000 2456666666663 3332 111344456666666666
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.3e-06 Score=78.99 Aligned_cols=195 Identities=17% Similarity=0.111 Sum_probs=131.3
Q ss_pred hhhccCCCCccEEEcccccccccccc----cccCCCCCcEEEeccCCCCcccC--------------CCCCCCCCceEEE
Q 007138 382 AERLDNNTSLETISIERCGNLKILPS----GLHNLRQLQGIKIWNCGNLVSFP--------------EGGLPCAKLRRLD 443 (616)
Q Consensus 382 ~~~~~~~~~L~~L~l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~~~--------------~~~~~~~~L~~L~ 443 (616)
...+..++.|+.|++++|-.-...+. .+.++..|++|++.+| .+.... .....-+.|+++.
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 34566678999999999865433333 3467899999999998 443211 1112235899999
Q ss_pred ccCCcccccchhh-hHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 444 ISDCKRLEGGFHR-YMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 444 l~~c~~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
... +++.+..-. .-..+...+.|+.+.+..|.+...+......++.++++|++|++.+|....+. ...+...+.
T Consensus 164 ~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg----s~~LakaL~ 238 (382)
T KOG1909|consen 164 CGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG----SVALAKALS 238 (382)
T ss_pred eec-cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----HHHHHHHhc
Confidence 988 677554333 33367777899999999887655555555567899999999999997322221 112344556
Q ss_pred CCCccceEecccCccccccc-----c-ccccCccccEEEecCCCCCcc-----cCCC-CCcCCcceEEEcCCch
Q 007138 523 LPASLTTLWISRFPNLERLS-----S-SIVDLQNLTELVLVNCPKLKY-----FPEK-GLPSSLLQLQIYCCPL 584 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~-----~-~~~~~~~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~i~~c~~ 584 (616)
.+++|++|.+++|. ++.-. . .-...|.|+.+.+.+ +.++. +... .-.|.|+.|++++|..
T Consensus 239 s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 78899999999986 44321 1 234589999999999 55544 1111 1257899999998863
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-07 Score=91.97 Aligned_cols=181 Identities=22% Similarity=0.257 Sum_probs=115.3
Q ss_pred chhhhhhccC--CCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchh
Q 007138 378 LESIAERLDN--NTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 378 ~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 455 (616)
++.+|..... +..-...+++.|. ...+|.....|..|+.+.++.| .+..+|........|.+++++. +.+....+
T Consensus 62 lk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~ 138 (722)
T KOG0532|consen 62 LKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLPD 138 (722)
T ss_pred hhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCCh
Confidence 3444443332 3344556777755 6678988999999999999987 5678888777777899999988 55644322
Q ss_pred hhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccC
Q 007138 456 RYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRF 535 (616)
Q Consensus 456 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c 535 (616)
.+ ..| -|+.|-+++|+.. ..++.+..++.|.+|+.+.| .+..++...+ .+.+|+.|.+..
T Consensus 139 -~l---C~l-pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~n--ei~slpsql~-------~l~slr~l~vrR- 198 (722)
T KOG0532|consen 139 -GL---CDL-PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKN--EIQSLPSQLG-------YLTSLRDLNVRR- 198 (722)
T ss_pred -hh---hcC-cceeEEEecCccc-----cCCcccccchhHHHhhhhhh--hhhhchHHhh-------hHHHHHHHHHhh-
Confidence 11 111 3555555655422 22334455666777777765 5556655543 466777777777
Q ss_pred ccccccccccccCccccEEEecCCCCCcccCCCC-CcCCcceEEEcCCc
Q 007138 536 PNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG-LPSSLLQLQIYCCP 583 (616)
Q Consensus 536 ~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~L~~L~i~~c~ 583 (616)
+++..+|..+. .-.|.+|+++ ||++..||... .+..|++|-+.++|
T Consensus 199 n~l~~lp~El~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 199 NHLEDLPEELC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhCCHHHh-CCceeeeecc-cCceeecchhhhhhhhheeeeeccCC
Confidence 56667776555 3356677776 47777777753 36777777777766
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1e-05 Score=83.79 Aligned_cols=34 Identities=35% Similarity=0.361 Sum_probs=19.8
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
.+++++.|++++ +.+..++. +..+.+|+.+++++
T Consensus 253 ~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred cccccceecccc-cccccccc-ccccCccCEEeccC
Confidence 355566666665 44555553 55566666666665
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.2e-05 Score=56.83 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=26.4
Q ss_pred CccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 494 SLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 494 ~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+|++|++++| .+..++... +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 2 ~L~~L~l~~n--~l~~i~~~~------f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNN--KLTEIPPDS------FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSS--TESEECTTT------TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCC--CCCccCHHH------HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence 4455555553 444444322 22445555555554 33444443 344555555555554
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=57.10 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=50.3
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
|+|++|++++| .++.+|. .+..+++|++|++++ +.++.++...+ +++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57999999995 7999986 778999999999997 89999998654 7899999999875
|
... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.7e-06 Score=87.86 Aligned_cols=111 Identities=27% Similarity=0.457 Sum_probs=57.4
Q ss_pred CCCcEEEccCCCCCcc--cccccCCCCCccEEEEcCC-CCCCCCC-----CCCCCCCCcEEEccCCCCccccchhhccCC
Q 007138 202 CRLEYLRLSNCEGLVK--LPQSSLSLSSLREIEICKC-SSLVSFP-----EVALPSKLKNIWISTCDALKSLPEAWMCDT 273 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 273 (616)
+.|+.|.+.+|..++. +-.....+++|+.|++++| ......+ ....+++|+.+++..+..+.+.........
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 5666666666655443 3334455666666666552 2222211 112256666666666665555444333344
Q ss_pred CCCccEEEeccCCCCcccccc---CCCCCccEEEEecCCCCC
Q 007138 274 NSSLEILSIHGCRSLTYIAAV---QLPPSLKQLSISDCDNIR 312 (616)
Q Consensus 274 ~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~l~ 312 (616)
+++|++|.+.+|..+++.... ..++.|+.|++++|..++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 566666666656543332221 344566666666666554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.2e-06 Score=88.71 Aligned_cols=121 Identities=24% Similarity=0.344 Sum_probs=71.7
Q ss_pred chhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCC-CCCcccc----cccCCCCCccEEEEcC
Q 007138 161 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNC-EGLVKLP----QSSLSLSSLREIEICK 235 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~ 235 (616)
.......++.|+.|.+.+|..+.... +..+...+++|+.|+++++ ......+ .....+++|+.|+++.
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~ 252 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG 252 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence 33444557777777777776666521 2333344477778877763 2222221 2234467777777777
Q ss_pred CCCCCCCC--CCC-CCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCC
Q 007138 236 CSSLVSFP--EVA-LPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSL 288 (616)
Q Consensus 236 ~~~l~~~~--~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 288 (616)
+..+++.. .+. .+++|+.|.+.+|..+++.........++.|++|++++|..+
T Consensus 253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 75555443 222 267788888777776555544444455677888888877665
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.4e-05 Score=81.46 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=58.1
Q ss_pred ccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccC
Q 007138 367 LKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 446 (616)
++.|+++++...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|.....+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666666666666666677777777777665556666666777777777776644445665555556677777766
Q ss_pred Ccccccchhhh
Q 007138 447 CKRLEGGFHRY 457 (616)
Q Consensus 447 c~~l~~~~~~~ 457 (616)
+.+++.+|..
T Consensus 500 -N~l~g~iP~~ 509 (623)
T PLN03150 500 -NSLSGRVPAA 509 (623)
T ss_pred -CcccccCChH
Confidence 4566666543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.7e-05 Score=77.77 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=58.0
Q ss_pred cCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCCc
Q 007138 492 FSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLP 571 (616)
Q Consensus 492 l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 571 (616)
..+|++|.+++| ..+....... .+..+..+.+.+ +.+..++..+..++++++|++.+ +.+.+++..+..
T Consensus 208 ~~~L~~l~~~~N-~~~~~~~~~~--------~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~ 276 (394)
T COG4886 208 LSALEELDLSNN-SIIELLSSLS--------NLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSL 276 (394)
T ss_pred hhhhhhhhhcCC-cceecchhhh--------hcccccccccCC-ceeeeccchhccccccceecccc-cccccccccccc
Confidence 345888888874 2222222222 466777777666 55666666788899999999998 899999886667
Q ss_pred CCcceEEEcCCc
Q 007138 572 SSLLQLQIYCCP 583 (616)
Q Consensus 572 ~~L~~L~i~~c~ 583 (616)
.+++.+++++..
T Consensus 277 ~~l~~L~~s~n~ 288 (394)
T COG4886 277 TNLRELDLSGNS 288 (394)
T ss_pred CccCEEeccCcc
Confidence 899999998854
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=7.7e-05 Score=69.61 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=60.5
Q ss_pred hHHhhhhhccCCCcEEEccCCCCCc--ccccccCCCCCccEEEEcCCCCCCCCCCC-CCCCCCcEEEccCCCCccccchh
Q 007138 192 DQQQQLCELSCRLEYLRLSNCEGLV--KLPQSSLSLSSLREIEICKCSSLVSFPEV-ALPSKLKNIWISTCDALKSLPEA 268 (616)
Q Consensus 192 ~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~ 268 (616)
+++..++..++.++.+|+.+|.... ++...+.+++.|+.|+++.|+--..+... ....+|++|.+.+.. +.--...
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~ 139 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQST 139 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhh
Confidence 4456666667889999999987633 55556778999999999988654455444 357788888887754 3221111
Q ss_pred hccCCCCCccEEEeccC
Q 007138 269 WMCDTNSSLEILSIHGC 285 (616)
Q Consensus 269 ~~~~~~~~L~~L~l~~~ 285 (616)
.....+|.+++++++.+
T Consensus 140 s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhcchhhhhhhhccc
Confidence 11234466777777654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.6e-05 Score=80.46 Aligned_cols=160 Identities=23% Similarity=0.284 Sum_probs=91.2
Q ss_pred cceeecccccccccccccCCC----------cccccCCCcceEeeccCCCcccccC----CCCCCccEEeecCCc----c
Q 007138 23 LETLRFENMQEWEDWIPLRSG----------QGVEWFPKLRELHIISCSKLQGTFP----EHLPALEMLVIEGCE----E 84 (616)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~----------~~~~~~~~L~~L~l~~c~~l~~~~p----~~~~~L~~L~l~~c~----~ 84 (616)
|++|.+.++...+.+.-.... -....-.+|++|+|++-..+....| ..+|.|+.|.+++-. .
T Consensus 85 L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d 164 (699)
T KOG3665|consen 85 LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD 164 (699)
T ss_pred ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh
Confidence 777777777655444332100 0003467888888887543332222 357888888888754 3
Q ss_pred hhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhH
Q 007138 85 LLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNEL 164 (616)
Q Consensus 85 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (616)
.......+|+|..||+++++.....+. +.+.+|+.|.+.++..... .....
T Consensus 165 F~~lc~sFpNL~sLDIS~TnI~nl~GI--------------------------S~LknLq~L~mrnLe~e~~---~~l~~ 215 (699)
T KOG3665|consen 165 FSQLCASFPNLRSLDISGTNISNLSGI--------------------------SRLKNLQVLSMRNLEFESY---QDLID 215 (699)
T ss_pred HHHHhhccCccceeecCCCCccCcHHH--------------------------hccccHHHHhccCCCCCch---hhHHH
Confidence 334556788899999998887665333 3445555555555444332 33334
Q ss_pred HhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCC
Q 007138 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEG 214 (616)
Q Consensus 165 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 214 (616)
+..+++|+.||+|.-.....- ......-......++||.||.++...
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~---~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDT---KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhcccCCCeeeccccccccch---HHHHHHHHhcccCccccEEecCCcch
Confidence 567888888888875433321 01011111122236778888777543
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00019 Score=47.52 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 244 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 244 (616)
++|++|++++|.. +++|..++++++|+.|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3678888888765 677777788888888888887 4665543
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00021 Score=47.35 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=29.9
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
++|++|++++ +.++.+|..+..+++|++|++++ +.+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSN-NPISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence 4678888888 56888886688888888888888 56777654
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00083 Score=73.37 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=74.4
Q ss_pred CCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 203 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.++.|+|++|.....+|..++.+++|+.|++++|.....+| .+..+++|+.|++++|.....+|..+ ..+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEE
Confidence 37788888887766788888888888888888885445666 45668888888888887555666654 5668888888
Q ss_pred eccCCCCcccccc--CCCCCccEEEEecCCCCC
Q 007138 282 IHGCRSLTYIAAV--QLPPSLKQLSISDCDNIR 312 (616)
Q Consensus 282 l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~ 312 (616)
++++..-..++.. ....++..+++.++..+.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 8876533333322 122345567777665443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00015 Score=67.68 Aligned_cols=190 Identities=16% Similarity=0.152 Sum_probs=101.8
Q ss_pred CCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccc-ccccc
Q 007138 329 CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNL-KILPS 407 (616)
Q Consensus 329 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~ 407 (616)
+.++++++.+ +.+.+ ...+...++.+ |.|+.|+++.|+....+........+|+.|-+.+...- +....
T Consensus 71 ~~v~elDL~~-N~iSd---WseI~~ile~l------P~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 71 TDVKELDLTG-NLISD---WSEIGAILEQL------PALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred hhhhhhhccc-chhcc---HHHHHHHHhcC------ccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhh
Confidence 4466666665 33332 11122334444 77888888877554433322245568888888775421 23334
Q ss_pred cccCCCCCcEEEeccCCCCcccCCC----CCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhh
Q 007138 408 GLHNLRQLQGIKIWNCGNLVSFPEG----GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMI 483 (616)
Q Consensus 408 ~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 483 (616)
.+..+|.+++|+++.|. +..+-.. ..-.+.+++++...|.... +..-|.
T Consensus 141 ~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-------------------w~~~~~------- 193 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-------------------WLNKNK------- 193 (418)
T ss_pred hhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHH-------------------HHHHHh-------
Confidence 55677888888888762 1111000 0001134445444443221 111121
Q ss_pred hcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--ccccCccccEEEecCCCC
Q 007138 484 ERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS--SIVDLQNLTELVLVNCPK 561 (616)
Q Consensus 484 ~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~--~~~~~~~L~~L~l~~c~~ 561 (616)
--.-+|++..+.+..| .++....+.+ +-.+|++--|.+.. +++.++.+ .+..|+.|..|++.+.|-
T Consensus 194 ----l~r~Fpnv~sv~v~e~--PlK~~s~ek~-----se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 194 ----LSRIFPNVNSVFVCEG--PLKTESSEKG-----SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred ----HHhhcccchheeeecC--cccchhhccc-----CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcc
Confidence 1134678888888775 3444333321 12456666677776 56666654 677888888888888666
Q ss_pred CcccCC
Q 007138 562 LKYFPE 567 (616)
Q Consensus 562 l~~l~~ 567 (616)
...+..
T Consensus 262 ~d~l~~ 267 (418)
T KOG2982|consen 262 SDPLRG 267 (418)
T ss_pred cccccC
Confidence 555544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00023 Score=77.57 Aligned_cols=108 Identities=20% Similarity=0.137 Sum_probs=57.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
.+|++|++.+-.... ...+......+|+|++|.+++-.-.. .++.++-..+++|..||+++++. +.+ .
T Consensus 122 ~nL~~LdI~G~~~~s--~~W~~kig~~LPsL~sL~i~~~~~~~--------~dF~~lc~sFpNL~sLDIS~TnI-~nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS--NGWPKKIGTMLPSLRSLVISGRQFDN--------DDFSQLCASFPNLRSLDISGTNI-SNL-S 189 (699)
T ss_pred HhhhhcCccccchhh--ccHHHHHhhhCcccceEEecCceecc--------hhHHHHhhccCccceeecCCCCc-cCc-H
Confidence 466666665533322 12333444556777777776632111 12333334447777777777443 444 4
Q ss_pred ccCCCCCccEEEEcCCCCCC--CCCCCCCCCCCcEEEccCCC
Q 007138 221 SSLSLSSLREIEICKCSSLV--SFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~L~~L~l~~~~ 260 (616)
+++.+++|+.|.+++-.... ++-.+..+.+|+.||+++-.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 56667777777766643221 12244556777777776544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00016 Score=75.22 Aligned_cols=103 Identities=24% Similarity=0.303 Sum_probs=57.2
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
.+++.|++.++.. ..+...+..+++|+.|++++|. ++.+ .++..++.|+.|++.+| .+..+.... .++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~~~-~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNLSGN-LISDISGLE-SLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccch-hhcccchhhhhcchheeccccc-cccc-cchhhccchhhheeccC-cchhccCCc-cchhhhcccC
Confidence 5566666666532 2233224556677777777755 3333 24556666777777776 344443322 1346777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCCh
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNM 476 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 476 (616)
++ +.++..-+. . ...+.+++.+++++|.
T Consensus 170 ~~-n~i~~ie~~--~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 170 SY-NRIVDIEND--E-LSELISLEELDLGGNS 197 (414)
T ss_pred Cc-chhhhhhhh--h-hhhccchHHHhccCCc
Confidence 77 344333211 0 3566677777777765
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=7.8e-05 Score=77.50 Aligned_cols=188 Identities=20% Similarity=0.189 Sum_probs=100.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
..++.+.+..+...+ +-..+..+++|+.|++.+|. +..+...+..+++|++|++++| .++.+... ..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l-~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLEGL-STLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccc-hhhcccchhhhhcchheecccc-ccccccch-hhccchhhhee
Confidence 445555555442222 22235566778888887755 4444333667778888888776 44444322 22225777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc--ccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG--FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++ +.++.. ..+..++.|+.+++++|.... .+. ...+.+++.+++.+| .+..+....
T Consensus 148 ~~-N~i~~~-----~~~~~l~~L~~l~l~~n~i~~------ie~~~~~~~~~l~~l~l~~n--~i~~i~~~~-------- 205 (414)
T KOG0531|consen 148 SG-NLISDI-----SGLESLKSLKLLDLSYNRIVD------IENDELSELISLEELDLGGN--SIREIEGLD-------- 205 (414)
T ss_pred cc-Ccchhc-----cCCccchhhhcccCCcchhhh------hhhhhhhhccchHHHhccCC--chhcccchH--------
Confidence 77 445332 234446777777777775322 112 356677777777775 333333322
Q ss_pred CCCccceEecccCccccccccccccCcc--ccEEEecCCCCCcccC-CCCCcCCcceEEEcC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQN--LTELVLVNCPKLKYFP-EKGLPSSLLQLQIYC 581 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~--L~~L~l~~c~~l~~l~-~~~~~~~L~~L~i~~ 581 (616)
....+..+++.. +.+..+. .+..... |+.+++.+ +.+..++ .......+..+++.+
T Consensus 206 ~~~~l~~~~l~~-n~i~~~~-~l~~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 206 LLKKLVLLSLLD-NKISKLE-GLNELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHHHHhhccc-ccceecc-CcccchhHHHHHHhccc-Cccccccccccccccccccchhh
Confidence 233333344444 3344333 2223333 77888887 6666653 223345555555554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=2.4e-05 Score=81.49 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=27.5
Q ss_pred CCCcEEEccCCCCCcccccc-cCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQS-SLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTC 259 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 259 (616)
++|++||+++|.. ..+|.. ...++ |+.|.+++| .++.+-.+.++.+|+.|++++|
T Consensus 209 ~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN-~l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNN-ALTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred ccccccccccchh-ccccccchhhhh-heeeeeccc-HHHhhhhHHhhhhhhccchhHh
Confidence 5566666666543 444431 12233 555555554 3444444455555555555554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00022 Score=74.50 Aligned_cols=107 Identities=26% Similarity=0.224 Sum_probs=77.7
Q ss_pred hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 460 ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 460 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
++.-++.|+.|+|+.|.... ...+..+++|++|||++| .+..+|.... .-..|+.|.+++ +.++
T Consensus 182 SLqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN--~L~~vp~l~~-------~gc~L~~L~lrn-N~l~ 245 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYN--CLRHVPQLSM-------VGCKLQLLNLRN-NALT 245 (1096)
T ss_pred HHHHHHHhhhhccchhhhhh------hHHHHhcccccccccccc--hhccccccch-------hhhhheeeeecc-cHHH
Confidence 56777889999999887332 225678899999999987 4555544331 123489999998 6788
Q ss_pred ccccccccCccccEEEecCCCCCcccCC---CCCcCCcceEEEcCCch
Q 007138 540 RLSSSIVDLQNLTELVLVNCPKLKYFPE---KGLPSSLLQLQIYCCPL 584 (616)
Q Consensus 540 ~i~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~~ 584 (616)
++- ++.++.+|+-|++++ |-+....+ .+.+..|.+|++.|+|.
T Consensus 246 tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 246 TLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 776 778899999999998 66655443 34467889999999873
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0096 Score=52.92 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=14.9
Q ss_pred CCCcEEEccCCCCCccccc--ccCCCCCccEEEEcCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQ--SSLSLSSLREIEICKC 236 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~ 236 (616)
++|+.|.+.+|.. .++.+ .+..+++|++|.+-+|
T Consensus 88 p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 88 PNLKTLILTNNSI-QELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cccceEEecCcch-hhhhhcchhccCCccceeeecCC
Confidence 4455555555443 22111 1334555555555554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.02 Score=51.02 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=59.9
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--ccccCccccEEEecCCCCCccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS--SIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l 565 (616)
.+.+++.|.+|.+.+| .+..+..... ..++.|++|.+.+ +.+..+.. .+..||+|+.|.+-+ +.+...
T Consensus 59 ~lp~l~rL~tLll~nN--rIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~-Npv~~k 128 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNN--RITRIDPDLD------TFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLG-NPVEHK 128 (233)
T ss_pred cCCCccccceEEecCC--cceeeccchh------hhccccceEEecC-cchhhhhhcchhccCCccceeeecC-Cchhcc
Confidence 5677788888888876 6776665542 3577888888888 56766654 466788888888888 555554
Q ss_pred CCC-----CCcCCcceEEEcCCc
Q 007138 566 PEK-----GLPSSLLQLQIYCCP 583 (616)
Q Consensus 566 ~~~-----~~~~~L~~L~i~~c~ 583 (616)
... ..+|+|+.|++.+-.
T Consensus 129 ~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 129 KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCceeEEEEecCcceEeehhhhh
Confidence 442 126888888887654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0091 Score=55.36 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=40.6
Q ss_pred ccCCCcceEeeccCCCcc-cccCCCCCCccEEeecCCc-----chhhhhcCCCCccEEEeCCCccee
Q 007138 47 EWFPKLRELHIISCSKLQ-GTFPEHLPALEMLVIEGCE-----ELLVSVASLPALCKFEIGGCKKVV 107 (616)
Q Consensus 47 ~~~~~L~~L~l~~c~~l~-~~~p~~~~~L~~L~l~~c~-----~l~~~~~~~~~L~~L~l~~~~~~~ 107 (616)
..|.+|+.|++.++.-.+ ..+| .+|+|+.|.++.+. .+......+|+|++|++++|.+..
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 458888888888875222 1233 37888888888774 333444556888888888887654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.00044 Score=64.08 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=54.5
Q ss_pred ccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC--
Q 007138 491 RFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-- 568 (616)
Q Consensus 491 ~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-- 568 (616)
.+.+.++|+..|| .+..+.... .++.|++|.++- ++|+++. .+..|++|++|+++. |.+.++.+.
T Consensus 17 dl~~vkKLNcwg~--~L~DIsic~--------kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGC--GLDDISICE--------KMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRK-NCIESLDELEY 83 (388)
T ss_pred HHHHhhhhcccCC--CccHHHHHH--------hcccceeEEeec-cccccch-hHHHHHHHHHHHHHh-cccccHHHHHH
Confidence 3556677777776 555555544 577788888876 5677765 466778888888877 677766652
Q ss_pred -CCcCCcceEEEcCCc
Q 007138 569 -GLPSSLLQLQIYCCP 583 (616)
Q Consensus 569 -~~~~~L~~L~i~~c~ 583 (616)
..+|+|.+|++.++|
T Consensus 84 LknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENP 99 (388)
T ss_pred HhcCchhhhHhhccCC
Confidence 236777777777665
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0061 Score=54.16 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=58.1
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC--CCCCCCCCceEEEccCCcccccchhhhHhhhccccc
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP--EGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTN 466 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 466 (616)
..++.++-+++....+-..-+..++.++.|.+.+|..+.... ......++|+.|+++.|+++|+. .++.+.++++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~---GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG---GLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh---HHHHHHHhhh
Confidence 356777777766555444456677888888888887665321 11123459999999999999885 4556677777
Q ss_pred ceeeecCCCh
Q 007138 467 LHSLYIGGNM 476 (616)
Q Consensus 467 L~~L~l~~~~ 476 (616)
|+.|.+.+..
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 7777776543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.009 Score=53.13 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=49.4
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccc-cccccCccccEEEecCCCCCccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l 565 (616)
.+..++.++.|.+.+| ..+.....+. .....++|+.|++++|+.|++-. .++.++++|+.|.+.+.+.+...
T Consensus 120 ~L~~l~~i~~l~l~~c-k~~dD~~L~~-----l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANC-KYFDDWCLER-----LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HHhccchhhhheeccc-cchhhHHHHH-----hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhch
Confidence 4466677777777773 3333322221 11257899999999999998754 37889999999999886665553
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.0058 Score=56.92 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=18.7
Q ss_pred CccEEeecCCcchh-hhhcCCCCccEEEeCCCcceeec
Q 007138 73 ALEMLVIEGCEELL-VSVASLPALCKFEIGGCKKVVWR 109 (616)
Q Consensus 73 ~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~~~~~~~~~ 109 (616)
+.++|+..+|..-. +...+++.|+.|.|+-|.+.+..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~ 57 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA 57 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccch
Confidence 34445555554221 33445666666666666555543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.015 Score=53.93 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCCcEEEccCC--CCCcccccccCCCCCccEEEEcCCCCCC---CCCCCCCCCCCcEEEccCCC
Q 007138 202 CRLEYLRLSNC--EGLVKLPQSSLSLSSLREIEICKCSSLV---SFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 202 ~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~~~L~~L~l~~~~ 260 (616)
++|+.|.++.| .....++....++++|++|++++|. ++ .++....+.+|..|++..|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCC
Confidence 55666666665 3323344334445666666666652 33 22233345555555555554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.012 Score=48.82 Aligned_cols=111 Identities=17% Similarity=0.108 Sum_probs=47.7
Q ss_pred ceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc-ccccCCccEEEEecCCCcccccccccccc
Q 007138 439 LRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG-FHRFSSLRHLTIRGCDDDMVSFPLEDKRL 517 (616)
Q Consensus 439 L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~~L~i~~~~~~l~~l~~~~~~~ 517 (616)
+..+++++|+-. -+++.+..+.+...|...+|++|.... .+.. ...++-.+.|++++| .+..+|.+..
T Consensus 29 ~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~n--eisdvPeE~A-- 97 (177)
T KOG4579|consen 29 LHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANN--EISDVPEELA-- 97 (177)
T ss_pred hhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchh--hhhhchHHHh--
Confidence 455666666422 123333344444455555555553110 0000 122334444555543 4455555432
Q ss_pred CCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 518 GTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 518 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+++|+.|+++.+ .+...|..+..+.+|-.|+..+ +....++-
T Consensus 98 -----am~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 98 -----AMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred -----hhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence 4555555555552 2333443333344555555444 44444443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.034 Score=51.77 Aligned_cols=188 Identities=16% Similarity=0.042 Sum_probs=98.7
Q ss_pred CcccEEEecCCCCc---hhh-------hhhccCCCCccEEEcccccccccccc----cccCCCCCcEEEeccCCCCcccC
Q 007138 365 PSLKSLYVYGCSKL---ESI-------AERLDNNTSLETISIERCGNLKILPS----GLHNLRQLQGIKIWNCGNLVSFP 430 (616)
Q Consensus 365 ~~L~~L~l~~~~~~---~~~-------~~~~~~~~~L~~L~l~~~~~l~~~~~----~l~~l~~L~~L~l~~~~~~~~~~ 430 (616)
.+|+..++++...- +.+ ...+..||.|+.+++++|..-...|. .+.+-+.|++|.+.+| .+.-+.
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~a 136 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIA 136 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccc
Confidence 56666666653211 122 23567788999999998876555544 3467788999999887 444321
Q ss_pred C--------------CCCCCCCceEEEccCCcccccch-hhhHhhhcccccceeeecCCChHHHHHh-hhcCccccccCC
Q 007138 431 E--------------GGLPCAKLRRLDISDCKRLEGGF-HRYMIALHNLTNLHSLYIGGNMEIWKSM-IERGRGFHRFSS 494 (616)
Q Consensus 431 ~--------------~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~ 494 (616)
. .+..-|.|+++.... +++.... ..+-..+..-..|+.+.+..|.+.-.+. .....++..+.+
T Consensus 137 G~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~ 215 (388)
T COG5238 137 GGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS 215 (388)
T ss_pred hhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence 1 011234788887776 4554332 2222334333577777776664332211 111224455677
Q ss_pred ccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc------ccccCccccEEEecC
Q 007138 495 LRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS------SIVDLQNLTELVLVN 558 (616)
Q Consensus 495 L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~------~~~~~~~L~~L~l~~ 558 (616)
|+.|+|.+|..... ... .++.+....+.|++|.+.+|---..-.. .-..+|+|..|...+
T Consensus 216 LevLDlqDNtft~~--gS~--~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 216 LEVLDLQDNTFTLE--GSR--YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred ceeeeccccchhhh--hHH--HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence 77778777522111 110 1122223345577777777642211111 112356666666666
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.067 Score=49.94 Aligned_cols=195 Identities=14% Similarity=0.088 Sum_probs=117.8
Q ss_pred CcccEEEecCCCCchhhhh----hccCCCCccEEEccccccccc----cccc---------ccCCCCCcEEEeccCCCCc
Q 007138 365 PSLKSLYVYGCSKLESIAE----RLDNNTSLETISIERCGNLKI----LPSG---------LHNLRQLQGIKIWNCGNLV 427 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~----~~~~---------l~~l~~L~~L~l~~~~~~~ 427 (616)
|.++..++++|.+-..+|. .+.+-+.|.+|.+++|..-.. +..+ ...=|.|+.+....|+ +.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-le 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hc
Confidence 8999999999977655554 356678999999998853322 1111 1245788888888763 33
Q ss_pred ccCCC----CCCC-CCceEEEccCCcccccchhhhH-----hhhcccccceeeecCCChHHHHHhhhcCccccccCCccE
Q 007138 428 SFPEG----GLPC-AKLRRLDISDCKRLEGGFHRYM-----IALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRH 497 (616)
Q Consensus 428 ~~~~~----~~~~-~~L~~L~l~~c~~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 497 (616)
..+.. .+.. .+|+.+.+.+ +. +-|..+ ..+..+++|+.||+.+|-....+...-...+...+.|++
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~q-Ng---Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQ-NG---IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeee-cC---cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 33321 1111 3788888887 33 334433 356789999999999997444333333345566788999
Q ss_pred EEEecCCCccccccccccccCCCCCCCCccceEecccCccccc------ccc-ccccCccccEEEecCCCCCcccCC
Q 007138 498 LTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLER------LSS-SIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 498 L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~------i~~-~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
|.+.+|.-.-.....-...... ...|+|..|...++..-.. ++. .-..+|-|..+.+.+ |++.....
T Consensus 247 L~lnDClls~~G~~~v~~~f~e--~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~~d 320 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNE--KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKELAD 320 (388)
T ss_pred ccccchhhccccHHHHHHHhhh--hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhHHH
Confidence 9999973222211111100001 1468888888877332111 121 234577888888887 66666443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.072 Score=29.10 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=12.2
Q ss_pred CCcEEEccCCCCCcccccccCC
Q 007138 203 RLEYLRLSNCEGLVKLPQSSLS 224 (616)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~ 224 (616)
+|++|++++|.. +.+|.++++
T Consensus 1 ~L~~Ldls~n~l-~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNL-TSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEE-SEEGTTTTT
T ss_pred CccEEECCCCcC-EeCChhhcC
Confidence 356677777643 466665443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.024 Score=47.16 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred HHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC
Q 007138 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP 243 (616)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 243 (616)
.+....+|+..+++++. ++++|+. +...++-++.|++++|.. .++|..+..++.|+.|+++.|+......
T Consensus 48 ~l~~~~el~~i~ls~N~-fk~fp~k--------ft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~p~ 117 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNG-FKKFPKK--------FTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAEPR 117 (177)
T ss_pred HHhCCceEEEEecccch-hhhCCHH--------Hhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccchH
Confidence 34556677777887743 5555443 233446788888888765 7888888888999999998886433322
Q ss_pred CCCCCCCCcEEEccCCCCccccch
Q 007138 244 EVALPSKLKNIWISTCDALKSLPE 267 (616)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~l~~~~~ 267 (616)
.+..+.++-.|+..++. ...++.
T Consensus 118 vi~~L~~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 118 VIAPLIKLDMLDSPENA-RAEIDV 140 (177)
T ss_pred HHHHHHhHHHhcCCCCc-cccCcH
Confidence 44447777777777665 334443
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.2 Score=25.37 Aligned_cols=9 Identities=56% Similarity=0.571 Sum_probs=3.8
Q ss_pred cccEEEecC
Q 007138 550 NLTELVLVN 558 (616)
Q Consensus 550 ~L~~L~l~~ 558 (616)
+|+.|++++
T Consensus 2 ~L~~L~l~~ 10 (17)
T PF13504_consen 2 NLRTLDLSN 10 (17)
T ss_dssp T-SEEEETS
T ss_pred ccCEEECCC
Confidence 344444444
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.15 Score=27.80 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=8.3
Q ss_pred cceEecccCcccccccc
Q 007138 527 LTTLWISRFPNLERLSS 543 (616)
Q Consensus 527 L~~L~l~~c~~l~~i~~ 543 (616)
|++|++++| .++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 455555554 4445554
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=88.83 E-value=2.8 Score=35.10 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=19.5
Q ss_pred cCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEcc
Q 007138 386 DNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDIS 445 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~ 445 (616)
..+++|+.+.+.+ .++.++. .+..+++|+.+.+.+. +..++...+ .+++++.+.+.
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccc
Confidence 3344555555542 2333322 3445555555555442 344443332 23345555553
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=83.60 E-value=3.9 Score=34.18 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=31.2
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
.+..+++|+.+++.+ .+..++... +..+++|+.+.+.+ .+..++. .+..+++|+.+.+.. ++..++
T Consensus 30 ~F~~~~~l~~i~~~~---~~~~i~~~~------F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~ 96 (129)
T PF13306_consen 30 AFSNCTSLKSINFPN---NLTSIGDNA------FSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIG 96 (129)
T ss_dssp TTTT-TT-SEEEESS---TTSCE-TTT------TTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEH
T ss_pred hcccccccccccccc---cccccceee------eecccccccccccc--cccccccccccccccccccccCc--cccEEc
Confidence 445555566666644 244443322 22344566666643 3444433 344466666666643 244444
Q ss_pred CCCC-cCCcceEEEc
Q 007138 567 EKGL-PSSLLQLQIY 580 (616)
Q Consensus 567 ~~~~-~~~L~~L~i~ 580 (616)
.... -..|+.+.+.
T Consensus 97 ~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 97 SSSFSNCNLKEINIP 111 (129)
T ss_dssp TTTTTT-T--EEE-T
T ss_pred hhhhcCCCceEEEEC
Confidence 4322 0144444443
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=81.54 E-value=0.88 Score=25.91 Aligned_cols=18 Identities=39% Similarity=0.914 Sum_probs=15.0
Q ss_pred CCCceEEEccCCcccccc
Q 007138 436 CAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~ 453 (616)
|++|+.|++++|.++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 458999999999988774
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 616 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 8e-04 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-22
Identities = 68/368 (18%), Positives = 100/368 (27%), Gaps = 90/368 (24%)
Query: 204 LEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALK 263
E L L + + S P T ALK
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR----TGRALK 69
Query: 264 SLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSS 323
+ + T L + L Q P +LS
Sbjct: 70 ATADLLEDATQPGRVALELRSV-PLP-----QFPDQAFRLS------------------- 104
Query: 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAE 383
L+H+ I + L ELP + L++L + L ++
Sbjct: 105 ------HLQHMTIDAA-GLM------ELPD-----TMQQFA-GLETLTLARN-PLRALPA 144
Query: 384 RLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443
+ + L +SI C L LP L + LV+ L+ L
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEH-----QGLVN----------LQSLR 189
Query: 444 ISDCKRLEGGFHRYMIAL----HNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLT 499
+ + +L NL NL SL I + + G H L L
Sbjct: 190 LEWTG---------IRSLPASIANLQNLKSLKIRNS-----PLSALGPAIHHLPKLEELD 235
Query: 500 IRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNC 559
+RGC + ++P A L L + NL L I L L +L L C
Sbjct: 236 LRGCTA-LRNYPPIFGGR-------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Query: 560 PKLKYFPE 567
L P
Sbjct: 288 VNLSRLPS 295
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 4e-19
Identities = 57/331 (17%), Positives = 106/331 (32%), Gaps = 53/331 (16%)
Query: 170 SLKRLTITSCPKLQSLVAE-----EEKDQQQQLCELSCRLEYLR-----LSNCEGLVKLP 219
+ L L+ + + + R L
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 220 QS--SLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSS 276
+ +E+ L FP + S L+++ I L LP+ M +
Sbjct: 73 DLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDT-MQQF-AG 128
Query: 277 LEILSIHGCRSLTYIAAVQLPPS------LKQLSISDCDNIRTLTVEEGIQSSRRYTSCL 330
LE L++ L LP S L++LSI C + L + L
Sbjct: 129 LETLTLARN-PLR-----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 331 --LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNN 388
L+ L + + LPA + NL +LKSL + L ++ + +
Sbjct: 183 VNLQSLRLEWT-GIR------SLPA-----SIANLQ-NLKSLKIRNS-PLSALGPAIHHL 228
Query: 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCK 448
LE + + C L+ P L+ + + +C NL++ P +L +LD+ C
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288
Query: 449 RLEGGFHRYMI--ALHNLTNLHSLYIGGNME 477
L + + L + + +++
Sbjct: 289 NLS------RLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 59/366 (16%), Positives = 110/366 (30%), Gaps = 68/366 (18%)
Query: 67 FPEHLPALEMLVIEGC---EELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVC 123
H E L +G ++ + + +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSA---WRQANSNNPQIETR 63
Query: 124 RDTSNQVFLAGPLKPRIPKLEELEIKNIENE-TYVWKSHNELLQDICSLKRLTITSCPKL 182
+ + P LE+++ L L+ +TI + L
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRS--VPLPQFPDQAFRLS----HLQHMTIDAA-GL 116
Query: 183 QSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSF 242
L + + + LE L L+ L LP S SL+ LRE+ I C L
Sbjct: 117 MELPDT--------MQQFA-GLETLTLARNP-LRALPASIASLNRLRELSIRACPELTEL 166
Query: 243 PE----------VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIA 292
PE L+++ + ++SLP + + + +L+ L I L+
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPAS-IANL-QNLKSLKIRNSP-LS--- 219
Query: 293 AVQLPPS------LKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIF 346
L P+ L++L + C +R G ++ L+ L + C +L
Sbjct: 220 --ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-------LKRLILKDCSNLL--- 267
Query: 347 SKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILP 406
LP + L L+ L + GC L + + + I + ++
Sbjct: 268 ---TLPLDIHRLT------QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
Query: 407 SGLHNL 412
Sbjct: 319 HRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 41/233 (17%)
Query: 366 SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425
++LY G + L + L R + + +N +
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIE----TRTGRA 67
Query: 426 LVSFPE--GGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN--MEIWKS 481
L + + L++ ++ L++L + I ME+ +
Sbjct: 68 LKATADLLEDATQPGRVALELRSVP-----LPQFPDQAFRLSHLQHMTIDAAGLMELPDT 122
Query: 482 MIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL 541
+F+ L LT+ + + P L L L I P L L
Sbjct: 123 -------MQQFAGLETLTLARN--PLRALPASIASL-------NRLRELSIRACPELTEL 166
Query: 542 SSSI---------VDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCPL 584
+ L NL L L ++ P +L L+I PL
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSPL 218
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 36/219 (16%)
Query: 378 LESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA 437
+ S +++ E + + L+ L ++ + P
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-- 58
Query: 438 KLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNM--EIWKSMIERGRGFHRFSSL 495
+++ + L+ + +L + + R S L
Sbjct: 59 ---QIETRTGRALKATADL--LEDATQPGRVALELRSVPLPQFPDQ-------AFRLSHL 106
Query: 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELV 555
+H+TI ++ P ++ A L TL ++R L L +SI L L EL
Sbjct: 107 QHMTIDAA--GLMELPDTMQQF-------AGLETLTLAR-NPLRALPASIASLNRLRELS 156
Query: 556 LVNCPKLKYFPE----------KGLPSSLLQLQIYCCPL 584
+ CP+L PE +L L++ +
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 3e-17
Identities = 96/579 (16%), Positives = 172/579 (29%), Gaps = 196/579 (33%)
Query: 115 LGSQNSVVCRDTSNQVFLAGPLKPRIPKL-----EELEIKNIENETYVWKSHNELLQDIC 169
L Q +V Q F+ L+ L E ++ Y+ + + L D
Sbjct: 72 LSKQEEMV------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQ 124
Query: 170 SLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLR 229
+ ++ L +Q L EL + + + G K + ++L
Sbjct: 125 VFAKYNVSRLQPYLKL--------RQALLELR-PAKNVLIDGVLGSGK---TWVALDVCL 172
Query: 230 EIEICKCSSLVSFPEVALPSKLKNIWIS--TCDALKSLPEAWMCDTNSSLEILSIHGCRS 287
++ + + K+ W++ C+ + LE+L
Sbjct: 173 SYKV----------QCKMDFKI--FWLNLKNCN-----------SPETVLEMLQ-----K 204
Query: 288 LTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG------IQSSRRYTSCLL---------- 331
L Y Q+ P+ S NI+ L + + S+ Y +CLL
Sbjct: 205 LLY----QIDPNWTSRSDHS-SNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 332 -EHLDISSCPSL----------------TCIFSKNELPATL---ESLE---------VGN 362
++S C L T S + TL E +
Sbjct: 259 WNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 363 LPPSLKSLYVYGCSKLESIAERLDNNTS------------LETISIERCGNLKILPSGLH 410
LP + + S IAE + + + L TI IE L +L
Sbjct: 318 LPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTI-IESS--LNVLEPAE- 370
Query: 411 NLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL----DISDCKRLEGGFHRY-MIALHN- 463
R++ L FP +P L + SD + H+Y ++
Sbjct: 371 -YRKMFD-------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 464 --LTNLHSLYI------GGNMEIWKSMIER---GRGFHR------------FSSL-RHLT 499
++ S+Y+ + +S+++ + F +S + HL
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 500 IRGCDDDMVSFP--------LEDK--RLGTALPLPASLTTL---------WISR-FPNLE 539
+ M F LE K TA S+ +I P E
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 540 RLSSSIVD-LQNLTELVLVNCPKLKYFPEKGLPSSLLQL 577
RL ++I+D L + E L+ + LL++
Sbjct: 543 RLVNAILDFLPKIEE-NLICSKY----------TDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 3e-16
Identities = 91/493 (18%), Positives = 157/493 (31%), Gaps = 130/493 (26%)
Query: 23 LETLRFENMQEWED----WIPLRSGQGVEWFPKLRE--LHIISCSKLQGTFPEHLPALEM 76
L+ +Q D W+ L++ E ++ + L+ I + +H +++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKL 225
Query: 77 LVIEGCEE-------------LLV--SVASLPALCKFEIGGCKKVVWRSATDHLGSQNSV 121
+ E LLV +V + A F + CK ++ T
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILL---TT--------- 272
Query: 122 VCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELL-----QDICSLKRLTI 176
R FL+ I L+ + +E LL L R +
Sbjct: 273 --RFKQVTDFLSAATTTHIS-LDHHSMTLTPDEV------KSLLLKYLDCRPQDLPREVL 323
Query: 177 TSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKC 236
T+ P+ S++AE +D + + NC+ L + +S SL+ L E K
Sbjct: 324 TTNPRRLSIIAESIRDG-------LATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKM 374
Query: 237 -SSLVSFPE-VALPSK-LKNIWISTCDALKSLPEAWMCD-TNSSLEILSIHGCRSLTYIA 292
L FP +P+ L IW D +KS + SL + S I
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIP 429
Query: 293 AVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELP 352
++ L LK +N L R +++H +I F ++L
Sbjct: 430 SIYL--ELKV----KLENEYAL--------HRS----IVDHYNIPKT------FDSDDLI 465
Query: 353 ATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNL 412
PP L Y Y I L N IE + + +
Sbjct: 466 -----------PPYLDQ-YFY-----SHIGHHLKN--------IEHPERMTLFRMVFLDF 500
Query: 413 RQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD-----ISDCKRLEGGFHRYMIAL-HNLTN 466
R L+ KI + + L L++L I D + + R + A+ L
Sbjct: 501 RFLEQ-KIRHDSTAWNASGSILNT--LQQLKFYKPYICD---NDPKYERLVNAILDFLPK 554
Query: 467 L-HSLYIGGNMEI 478
+ +L ++
Sbjct: 555 IEENLICSKYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 60/362 (16%), Positives = 103/362 (28%), Gaps = 103/362 (28%)
Query: 296 LPPSLKQ-LSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNEL--- 351
+ K LS + D+I + ++ + + R LL S + F + L
Sbjct: 38 VQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLL-----SKQEEMVQKFVEEVLRIN 90
Query: 352 -PATLESLEVGNLPPSLKS-LYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGL 409
+ ++ PS+ + +Y+ +L + +N ++ R L L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN------DNQVFAKYNVSRLQPYLKLRQAL 144
Query: 410 HNLRQLQGIKIWNCGNLVSFPEGGLPCAK-------LRRLDISDCKRLEGGFHRYMIALH 462
LR + + I +G L K + F + + L
Sbjct: 145 LELRPAKNVLI----------DGVLGSGKTWVALDVCLSYKVQCKM----DFKIFWLNLK 190
Query: 463 N-------LTNLHSLY--IGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLE 513
N L L L I N + R S++ E
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQA---------------E 233
Query: 514 DKRLGTALPLPASL-------------------TTLWISRFPNLERLSSSIVDLQNLTEL 554
+RL + P L L +RF + + + T +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV----TDFLSAATTTHI 289
Query: 555 VLVNCPK-----------LKYF--PEKGLPSSLLQLQIYCCPLIAEKCRKDGGQYWDLLT 601
L + LKY + LP +L +IAE R DG WD
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWK 348
Query: 602 HI 603
H+
Sbjct: 349 HV 350
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 7e-15
Identities = 50/430 (11%), Positives = 111/430 (25%), Gaps = 69/430 (16%)
Query: 50 PKLRELHIISCSKLQGT------FPEHLPALEMLVIEGCEELLVSVASLPALCKFEIGGC 103
K++ L + S + +H +LE+L E +S L + + C
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR----NC 219
Query: 104 KKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNE 163
+ L S F LEE ++ + E
Sbjct: 220 R---------SLVSVKVGDFEILELVGFFK-----AAANLEEFCGGSLNEDI----GMPE 261
Query: 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLV-KLPQSS 222
++ ++L + L + ++ L L
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGPNEMPI-------LFPFAAQIRKLDLLYALLETEDHCTLI 314
Query: 223 LSLSSLREIEICKCSSLVSFPEVALP-SKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281
+L +E +A +LK + I + + + + L L+
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374
Query: 282 IHGCRSLTYI-------------AAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTS 328
GC+ L Y+ + +L + D +T R
Sbjct: 375 -QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433
Query: 329 CL--LEHLDISSCPSLTCIFSKNELPATLESLE-VGNLPPSLKSLYVYGCSKL-ESIAER 384
L T L +G P+++ + + + E + E
Sbjct: 434 GCKKLRRFAFYLRQGG----------LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483
Query: 385 LDNNTSLETISIERCGNL-KILPSGLHNLRQLQGIKIWNCG---NLVSFPEGGLPCAKLR 440
+L+ + + C + + + + L L+ + + + P +
Sbjct: 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543
Query: 441 RLDISDCKRL 450
+ +
Sbjct: 544 LIPSRRVPEV 553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 8e-14
Identities = 65/517 (12%), Positives = 140/517 (27%), Gaps = 69/517 (13%)
Query: 20 FPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQ----GTFPEHLPALE 75
L+++ F M + + + L L + CS + H ++
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKAR---ADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167
Query: 76 MLVIEGCEELLVSVASLPALCK---------FEIGGCKKV---VWRSATDHLGSQNSVVC 123
L++E L L + F + K+ + + S SV
Sbjct: 168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227
Query: 124 RDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQ 183
D + LEE ++ + E ++ ++L +
Sbjct: 228 GDFEILELVG--FFKAAANLEEFCGGSLNEDI----GMPEKYMNLVFPRKLCRLGLSYMG 281
Query: 184 SLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLV-KLPQSSLSLSSLREIEICKCSSLVSF 242
L + ++ L L +L +E
Sbjct: 282 PNEMPI-------LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL 334
Query: 243 PEVALP-SKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLK 301
+A +LK + I + + + + L L+ GC+ L Y+A
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA-QGCQELEYMAV-------- 385
Query: 302 QLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361
+I ++E + + + +T + N + + L
Sbjct: 386 -----YVSDITNESLESIGTYLKNLCD--FRLVLLDREERITDLPLDNGVRSLLIGC--- 435
Query: 362 NLPPSLKSLYVYGCSKL---ESIAERLDNNTSLETISIERCGN----LKILPSGLHNLRQ 414
L+ Y ++ + ++ + + G L G NL++
Sbjct: 436 ---KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492
Query: 415 LQGIKIWNCGNL-VSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIG 473
L ++ C + LR L + + G +A N+ +
Sbjct: 493 L---EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW-NIELIPSR 548
Query: 474 GNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSF 510
E+ + R H L + ++ G D +
Sbjct: 549 RVPEVNQQGEIR-EMEHPAHILAYYSLAGQRTDCPTT 584
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 64/473 (13%), Positives = 140/473 (29%), Gaps = 72/473 (15%)
Query: 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCEL 200
LE L++ T ++ +K L + +E++ +L +
Sbjct: 138 DDLETLKLDKCSGFTT--DGLLSIVTHCRKIKTLLMEESS-----FSEKDGKWLHELAQH 190
Query: 201 SCRLEYLRLSNC-------EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKN 253
+ LE L + L + ++ SL +++ L + L+
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNC---RSLVSVKVGDFEILELVGFFKAAANLEE 247
Query: 254 IWISTCDALKSLPEAWM-CDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIR 312
+ + +PE +M L L + +++L +
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA---- 303
Query: 313 TLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYV 372
L E+ ++ + LE L+ + + + LK L +
Sbjct: 304 LLETEDHCTLIQKCPN--LEVLETRNVIGDRGLEV------------LAQYCKQLKRLRI 349
Query: 373 YGCSKLESIAERLD------------NNTSLETISIERCG----NLKILPSGLHNLRQLQ 416
+ + + + LE +++ +L+ + + L NL +
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409
Query: 417 GIKIWNCGNLVSFP------EGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSL 470
+ + + P + C KLRR + I N+ +
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-QYSPNVRWM 468
Query: 471 YIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTL 530
+G E + ++E RG L+ L +RGC ++ + A+ SL L
Sbjct: 469 LLGYVGESDEGLMEFSRGCPN---LQKLEMRGC-------CFSERAIAAAVTKLPSLRYL 518
Query: 531 WISRFP---NLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIY 580
W+ + + L N+ + P++ E + Y
Sbjct: 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAY 571
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 6e-11
Identities = 68/411 (16%), Positives = 119/411 (28%), Gaps = 63/411 (15%)
Query: 197 LCELSCRLEYLRLSNC-----EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKL 251
L L L+L L+ + EI L S
Sbjct: 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI-SNNLRQLKSV-------HF 119
Query: 252 KNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTY---IAAVQLPPSLKQLSISDC 308
+ + + + L L +A LE L + C T ++ V +K L + +
Sbjct: 120 RRMIV-SDLDLDRLAKARA----DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174
Query: 309 DNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLE-VGNLPPSL 367
+ + ++ TS LE L+ + + LE + SL
Sbjct: 175 SFS-EKDGKWLHELAQHNTS--LEVLNFYMTEFA---------KISPKDLETIARNCRSL 222
Query: 368 KSLYVYGCSKLE--SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425
S+ V LE + N S+ + L R+L + + G
Sbjct: 223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282
Query: 426 LVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485
P A++R+LD+ + NL L + + +
Sbjct: 283 N-EMPILFPFAAQIRKLDLLYALLETEDHCT---LIQKCPNLEVLETRNVIGD-RGLEVL 337
Query: 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS--- 542
+ + L+ L I D + L L L LE ++
Sbjct: 338 AQYCKQ---LKRLRIERGAD------EQGMEDEEGLVSQRGLIAL-AQGCQELEYMAVYV 387
Query: 543 SSIVD---------LQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
S I + L+NL + LV + + + L + + L I C L
Sbjct: 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 39/305 (12%), Positives = 91/305 (29%), Gaps = 32/305 (10%)
Query: 268 AWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYT 327
W + + E +++ C + T + P+L+ L + + Y
Sbjct: 43 RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG--YV 100
Query: 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEV--GNLPPSLKSLYVYGCSKL--ESIAE 383
+ + + ++ L + + + + L+ L++L + CS + +
Sbjct: 101 TPWVTEI-SNNLRQLKSVHFRR-MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158
Query: 384 RLDNNTSLETISIERCGNLKILPSGLH----NLRQLQGIKIWNCG----NLVSFPEGGLP 435
+ + ++T+ +E + LH + L+ + + +
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 436 CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495
C L + + D + LE + A NL + ++ + +
Sbjct: 219 CRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGM-------PEKYMNLVFP 269
Query: 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL-ERLSSSIVDLQNLTEL 554
R L G + + P A + L + E + I NL L
Sbjct: 270 RKLCRLGLSY------MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323
Query: 555 VLVNC 559
N
Sbjct: 324 ETRNV 328
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 5e-13
Identities = 52/350 (14%), Positives = 106/350 (30%), Gaps = 69/350 (19%)
Query: 142 KLEELEIKNIENETYVWKSHNEL--LQDICSLKRLT-------------ITSCPKLQSLV 186
+ + + + T + ++ + + I L LT ++ L L
Sbjct: 32 ATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLA 91
Query: 187 AEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVA 246
+ S +L L ++ L L + + L ++++ + L
Sbjct: 92 CD------------SNKLTNLDVTPLTKLTYL---NCDTNKLTKLDVSQNPLLTYL--NC 134
Query: 247 LPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSIS 306
+ L I +S L L C N + L + LT + + +L +S
Sbjct: 135 ARNTLTEIDVSHNTQLTEL----DCHLNKKITKLDVTPQTQLTTLDCSF--NKITELDVS 188
Query: 307 DCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIF-SKNELPATLESLEVGNLPP 365
+ L + + + LD++ LT + S N+L ++V L
Sbjct: 189 QNKLLNRLNCD----------TNNITKLDLNQNIQLTFLDCSSNKL----TEIDVTPLT- 233
Query: 366 SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425
L L + + + L T+ + +L + L + QL + C
Sbjct: 234 QLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQT-DLLEID--LTHNTQLIYFQAEGCRK 287
Query: 426 LVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475
+ +L LD + + L L LY+
Sbjct: 288 IKELDVTHNT--QLYLLDCQAAG-IT------ELDLSQNPKLVYLYLNNT 328
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 73/375 (19%), Positives = 121/375 (32%), Gaps = 85/375 (22%)
Query: 203 RLEYLRLSNC--------EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPS-KLKN 253
L L N E L L + + +++ +++ + ++L A S KL N
Sbjct: 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYL---ACDSNKLTN 99
Query: 254 IWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRT 313
+ ++ L L CDTN L L + LTY+ + +L ++ +S +
Sbjct: 100 LDVTPLTKLTYL----NCDTNK-LTKLDVSQNPLLTYLNCARN--TLTEIDVSHNTQLTE 152
Query: 314 LTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLYV 372
L + + + LD++ LT + S N++ L+V L L
Sbjct: 153 LDC---------HLNKKITKLDVTPQTQLTTLDCSFNKI----TELDVSQNK-LLNRLNC 198
Query: 373 YGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG 432
+ + L+ N L + L + + L QL L
Sbjct: 199 DTN-NITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELDVS 251
Query: 433 GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRF 492
L KL L LE I L + T L G +I ++
Sbjct: 252 TLS--KLTTLHCIQTDLLE-------IDLTHNTQLIYFQAEGCRKI--KELD----VTHN 296
Query: 493 SSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQN-- 550
+ L L + +T L +S+ P L L L N
Sbjct: 297 TQLYLLDCQAA----------------------GITELDLSQNPKLVYL-----YLNNTE 329
Query: 551 LTELVLVNCPKLKYF 565
LTEL + + KLK
Sbjct: 330 LTELDVSHNTKLKSL 344
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 59/351 (16%), Positives = 108/351 (30%), Gaps = 69/351 (19%)
Query: 222 SLSLSSLREIEICKCSS--LVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279
++S L + C + + + + L + ++ + + +L + N++L
Sbjct: 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLDLS----QNTNLTY 89
Query: 280 LSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSC 339
L+ + L L ++ + L + + L LD+S
Sbjct: 90 LACDSNK-------------LTNLDVTPLTKLTYLNCD----------TNKLTKLDVSQN 126
Query: 340 PSLTCIF-SKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIER 398
P LT + ++N L ++V + L L + K+ + + T L T+
Sbjct: 127 PLLTYLNCARNTL----TEIDVSHNT-QLTELDCHLNKKITKLD--VTPQTQLTTLDCSF 179
Query: 399 CGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYM 458
+ L + + L + N+ +L LD S K L
Sbjct: 180 N-KITELD--VSQNKLLNRLNCDTN-NITKLDLNQNI--QLTFLDCSSNK-LT------E 226
Query: 459 IALHNLTNLHSLYIGGNM--EIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKR 516
I + LT L N E+ S S L L D ++ L
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVST---------LSKLTTLHCIQTD--LLEIDLTHNT 275
Query: 517 LGTALPLPA--SLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYF 565
+ L ++ L L +TEL L PKL Y
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLD---CQAAGITELDLSQNPKLVYL 323
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 56/364 (15%), Positives = 116/364 (31%), Gaps = 41/364 (11%)
Query: 235 KCSSLVSFPEVALP--SKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIA 292
+ P V L ++ + ++ A +P+A + + L++LS
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQL-TELKVLSFGTHSETVSGR 364
Query: 293 AVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELP 352
+S IR + + +R L I+ P + I + +
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI- 423
Query: 353 ATLESLEVGNLPPSLKSL--YVYGCSKLESIAERLDNN--------TSLETISIERCGNL 402
+L+ ++GNL + + + +KL+ I N+ E + +
Sbjct: 424 -SLKDTQIGNLTNRITFISKAIQRLTKLQII--YFANSPFTYDNIAVDWEDANSDYAKQY 480
Query: 403 KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCK-----RLEGGFHRY 457
+ NL+ L ++++NC N+ P+ +L+ L+I+ + +L+ + R
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540
Query: 458 MIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRL 517
+ Y+G N + + L L +
Sbjct: 541 ADDEDTGPKIQIFYMGYN-NL--EEFPASASLQKMVKLGLLDCVHN--KVRHLE------ 589
Query: 518 GTALPLPASLTTLWISRFPN-LERLSSSI-VDLQNLTELVLVNCPKLKYFPEKGLPSSLL 575
A LT L + N +E + + L + KLKY P S+
Sbjct: 590 --AFGTNVKLTDLKLDY--NQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVY 644
Query: 576 QLQI 579
+
Sbjct: 645 VMGS 648
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 58/468 (12%), Positives = 138/468 (29%), Gaps = 89/468 (19%)
Query: 160 SHNELLQ----DICSLKRLT--------ITSCPKLQSLVAEEEKDQQQQLCELSCRLEYL 207
+ I L L T +L +++ + + +
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390
Query: 208 RLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPE 267
L + L +++ E++ K S +S + + L N A++ L
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI-GNLTNRITFISKAIQRL-- 447
Query: 268 AWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYT 327
+ L+I+ TY ++ + + E + +
Sbjct: 448 -------TKLQIIYFANSP-FTY-----DNIAVDWEDANSDYAKQYENEELSWSNLKD-- 492
Query: 328 SCLLEHLDISSCPSLTCI--------------FSKNELPATLESL--------EVGNLPP 365
L +++ +CP++T + + N + + + P
Sbjct: 493 ---LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP- 548
Query: 366 SLKSLYVYGCSKLESI--AERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNC 423
++ Y+ LE + L L + ++ L + +L +K+
Sbjct: 549 KIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA-FGTNVKLTDLKLDYN 605
Query: 424 GNLVSFPEGGLPCAK-LRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNM--EI 478
+ PE + L S K + F+ ++ + S+ N
Sbjct: 606 -QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-----AKSVYVMGSVDFSYNKIGSE 659
Query: 479 WKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLW-----IS 533
++ I ++ + +T+ + + FP E G+ ++T+ ++
Sbjct: 660 GRN-ISCSMDDYKGINASTVTLSYNE--IQKFPTELFATGS------PISTIILSNNLMT 710
Query: 534 RFPN--LERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQI 579
P L+ + + LT + L KL + ++L L
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSN 757
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 71/509 (13%), Positives = 144/509 (28%), Gaps = 100/509 (19%)
Query: 51 KLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEELLVSVASLPALCKFEIGGCKKVV 107
++ L + + +G P+ L L++L E + ++ +K
Sbjct: 324 RVTGLSL-AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Query: 108 WRSATDHLGSQN--SVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELL 165
R + + D P I K + +K+ T + N +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD----TQIGNLTNRIT 438
Query: 166 ---QDICSLKRLTI---------TSCPKLQSLVAEEEKDQQQQLCELS----CRLEYLRL 209
+ I L +L I + A + +Q + ELS L + L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498
Query: 210 SNCEGLVKLPQS--------SLSLSS--LREIEICKCSSLVSFPEVALPSKLKNIWISTC 259
NC + +LP SL+++ K + K++ ++
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG 319
+ L+ P + L +L + + ++ A L L + I + +
Sbjct: 559 N-LEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFC 615
Query: 320 IQSSRRYTSCLLEHLDIS--------------SCPSLTCI-FSKNEL----PATLESLEV 360
+ + +E L S S + + FS N++ S++
Sbjct: 616 AFTDQ------VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 361 GNLPPSLKSLYVYG----------CSKLESIAE-RLDNNTSLETISIERCGNLKILPSGL 409
+ ++ + + I+ L NN + +I
Sbjct: 670 YKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNT 727
Query: 410 HNLRQL-----------QGIKIWNCGNLV----------SFPEGGLPCAKLRRLDISDCK 448
+ L + + L SFP L ++L+ I +
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787
Query: 449 RLEGGFHRYMI--ALHNLTNLHSLYIGGN 475
EG + +L L IG N
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSN 816
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 71/394 (18%), Positives = 141/394 (35%), Gaps = 48/394 (12%)
Query: 203 RLEYLRLSNC--EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPS--KLKNIWIST 258
L+ L LSN + L + SSL+++E+ + F + +L ++++
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNN 204
Query: 259 CDALKSLPEAW-MCDTNSSLEILSIHGCRSLTYIAAVQL----PPSLKQLSISDCDNIRT 313
SL E + N+S+ LS+ L+ + +L L +S N+
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYN-NLNV 262
Query: 314 LTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVY 373
+ + + LE+ + ++ +FS + L ++ NL S +
Sbjct: 263 VG-NDSFAWLPQ-----LEYFFLEYN-NIQHLFSHS--LHGLFNVRYLNLKRSFTKQSIS 313
Query: 374 GCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKI-WNCGNLVSFPEG 432
S + LE +++E I + L L+ + + + +L +
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373
Query: 433 ---GLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGR 487
L + L L+++ K ++E A L +L L +G N EI G+
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESD------AFSWLGHLEVLDLGLN-EI--GQELTGQ 424
Query: 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWIS--RFPNLERLSSSI 545
+ ++ + + + +P SL L + N++ S
Sbjct: 425 EWRGLENIFEIYLSYN-------KYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPF 476
Query: 546 VDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQI 579
L+NLT L L N + + L L +L+I
Sbjct: 477 QPLRNLTILDLSNN-NIANINDDML-EGLEKLEI 508
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 40/256 (15%), Positives = 79/256 (30%), Gaps = 38/256 (14%)
Query: 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDN 387
+ E D S LT ++P +LP ++ L + A
Sbjct: 3 TVSHEVADCSHL-KLT------QVPD--------DLPTNITVLNLTHNQLRRLPAANFTR 47
Query: 388 NTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISD 446
+ L ++ + K+ P L L+ + + + L + C L L +
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMS 106
Query: 447 CK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD 504
+++ NL +L + N + S + G + +L+ L +
Sbjct: 107 NSIQKIKNN------PFVKQKNLITLDLSHNG-L--SSTKLG-TQVQLENLQELLLSNN- 155
Query: 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLK 563
+ + E+ SL L +S ++ S + L L L N
Sbjct: 156 -KIQALKSEE---LDIFANS-SLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209
Query: 564 YFPEK-GLPSSLLQLQ 578
EK L + ++
Sbjct: 210 SLTEKLCLELANTSIR 225
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 66/411 (16%), Positives = 118/411 (28%), Gaps = 80/411 (19%)
Query: 203 RLEYLRLSNC-------EGLVKLPQ-SSLSLSS--LREIEICKCSSLVSFPEVALPSKLK 252
L L LS + LPQ L ++ + L + + L
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 253 NIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDN 310
IS +L + + LE L++ + I + +LK LS+S+
Sbjct: 309 KQSISLA-SLPKIDDFSFQWL-KCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNS-F 364
Query: 311 IRTLTVEEGIQSSRRYTSCLLEHLDISSC-------------PSLTCI-FSKNELPATLE 356
T+ S ++ L L+++ L + NE+ L
Sbjct: 365 TSLRTLTNETFVSLAHSP--LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 357 SLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIE--RCGNLKILPSGLHNLRQ 414
E L ++ +Y+ L+ SL+ + + N+ PS LR
Sbjct: 423 GQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481
Query: 415 LQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGG 474
L + + N N+ + + L L L L +
Sbjct: 482 LTILDLSNN-NIANINDD---------------------------MLEGLEKLEILDLQH 513
Query: 475 NM--EIWKSMIERG--RGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTL 530
N +WK G S L L + ++ + L L +
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-------FDEIPVEVFKDLF-ELKII 565
Query: 531 WISRFPN-LERL-SSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQI 579
+ N L L +S + +L L L + +K + L
Sbjct: 566 DLGL--NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTE 613
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 60/396 (15%), Positives = 121/396 (30%), Gaps = 54/396 (13%)
Query: 139 RIPKLEELEIKNIENETYVWKSHNELLQD-----ICSLKRLTITSCPKLQSLVAEE---E 190
I L + + N Y+ + Q + + + L+ L E+
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 191 KDQQQQLCELSCRLEYLRLS-NCEGLVKLPQ---SSLSLSSLREIEICKCSSLVSFPEVA 246
+ L L+YL LS + L L SL+ S L + + K + A
Sbjct: 343 GIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDA 400
Query: 247 LP--SKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQ 302
L+ + + + + ++ + + + + PSL++
Sbjct: 401 FSWLGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQR 458
Query: 303 LSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN 362
L + ++ + R L LD+S+ ++ I LE L
Sbjct: 459 LMLRRV-ALKNVDSSPSPFQPLRN----LTILDLSNN-NIANI-----NDDMLEGL---- 503
Query: 363 LPPSLKSLYVYGCSKLESIAER---------LDNNTSLETISIERCGNLKILPSGLHNLR 413
L+ L + L + + L + L +++E G +I +L
Sbjct: 504 --EKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560
Query: 414 QLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYI 472
+L+ I + NL + P L+ L++ + + NL L +
Sbjct: 561 ELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNL-ITSVEKKVF--GPAFRNLTELDM 616
Query: 473 GGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMV 508
N + E F + + H I +
Sbjct: 617 RFNP--FDCTCESIAWFVNWINETHTNIPELSSHYL 650
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 63/501 (12%), Positives = 147/501 (29%), Gaps = 81/501 (16%)
Query: 132 LAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 191
+G + I +L ELE+ + + + I + ++ +
Sbjct: 93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY 152
Query: 192 DQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREI------------EICKCSSL 239
D ++ +L +++ + +SS +I + + + L
Sbjct: 153 DPREDFSDLI----KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208
Query: 240 V-------SFPEVALPSKLKNIWISTCDALKSLPEAWMCDTN-SSLEILSIHGCRSLTYI 291
F + +N K+ W N L + ++ C +LT +
Sbjct: 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW---DNLKDLTDVEVYNCPNLTKL 265
Query: 292 AAV--QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL--LEHLD------------ 335
LP ++ ++++ + + + ++ +
Sbjct: 266 PTFLKALP-EMQLINVACN-RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 336 --ISSCPSLTCIF-SKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNN-TSL 391
+ L + N+L L + G+ L SL + ++ I +
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPAF--GSEI-KLASLNLAYN-QITEIPANFCGFTEQV 379
Query: 392 ETISIERCGNLKILPS--GLHNLRQLQGIKIWN-------CGNLVSFPEGGLPCAKLRRL 442
E +S LK +P+ ++ + I N + +
Sbjct: 380 ENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNM--EIWKSMIERG-RGFHRFSSLRHLT 499
++S+ + + + L S+ + GNM EI K+ ++ F L +
Sbjct: 439 NLSNNQ-ISKFPKE---LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494
Query: 500 IRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN-LERLSSSIVDLQNLTELVLVN 558
+R + +D R T LP L + +S N + + ++ L + N
Sbjct: 495 LRFNK--LTKLS-DDFRATT---LP-YLVGIDLSY--NSFSKFPTQPLNSSTLKGFGIRN 545
Query: 559 CPKLKYFPEKG-LPSSLLQLQ 578
+ P +
Sbjct: 546 QRDAQGNRTLREWPEGITLCP 566
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 37/288 (12%), Positives = 85/288 (29%), Gaps = 44/288 (15%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEIC----KCSSLVSFP-EVALPSKLKNIWIS 257
R+ L L ++P + L+ L + + K + + P ++ +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 258 TCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI-AAVQLPPSLKQLSISDCDNIRTLTV 316
K+ + + S L I+ I + ++ Q+ +NI +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFV-- 198
Query: 317 EEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 376
+ + + L + + N+ + ++
Sbjct: 199 SKAVMRLTK-----LRQFYMGNS-----------------PFVAENICEAWENENSEYAQ 236
Query: 377 KLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGL-- 434
+ ++ + DN L + + C NL LP+ L L ++Q I + +S +
Sbjct: 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDW 295
Query: 435 -------PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475
K++ + I +L + L L N
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVET---SLQKMKKLGMLECLYN 340
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 59/378 (15%), Positives = 117/378 (30%), Gaps = 69/378 (18%)
Query: 146 LEIKNIENETYVWKSHNELL----QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELS 201
L+ N+++ T V + L + +L + + + + + E+ KD Q L +
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302
Query: 202 C--RLEYLRLSNC--------EGLVKLPQ-SSLSLSS--LREI--EICKCSSLV------ 240
+++ + + L K+ + L L L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362
Query: 241 ----SFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR--SLTYIA 292
P +++N+ + LK +P + + S + + S+
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 293 AVQLPP------SLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIF 346
L P ++ +++S+ I +E + L +++ LT I
Sbjct: 422 FDPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSP-----LSSINLMGN-MLTEI- 472
Query: 347 SKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAE--RLDNNTSLETISIERCGNLKI 404
KN L E+ N L S+ + KL +++ R L I + +
Sbjct: 473 PKNSL--KDENENFKNTY-LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSK 527
Query: 405 LPSGLHNLRQLQGIKIWNCGNLVS-FPEGGLP-----CAKLRRLDISDCKRLEGGFHRYM 458
P+ N L+G I N + P C L +L I +
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRK------ 580
Query: 459 IALHNLTNLHSLYIGGNM 476
+ N+ L I N
Sbjct: 581 VNEKITPNISVLDIKDNP 598
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 24/199 (12%)
Query: 385 LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWN----CGNLVSFPEGGLPCAKLR 440
L++N + +S+E G +P + L +L+ + + + + P+G
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 441 RLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTI 500
+ + F Y + ++L I + + +L+ I
Sbjct: 137 QKQKMRMH-YQKTFVDYDPRE-DFSDLIKDCINSDPQQKSI------KKSSRITLKDTQI 188
Query: 501 RGCDDDMVSFPLEDKRLG------------TALPLPASLTTLWISRFPNLERLSSSIVDL 548
+++ RL A + + + +L
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248
Query: 549 QNLTELVLVNCPKLKYFPE 567
++LT++ + NCP L P
Sbjct: 249 KDLTDVEVYNCPNLTKLPT 267
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 7e-11
Identities = 59/388 (15%), Positives = 121/388 (31%), Gaps = 52/388 (13%)
Query: 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCEL 200
L+EL+++ + + + SL L I+ S A E +L
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE------RLVTR 209
Query: 201 SCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSK---------- 250
L+ L+L+ L KL L E+ ++ V + S
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269
Query: 251 LKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTY--IAAVQLPPSLKQLSISDC 308
L W + L ++ S L L++ +Y + + P L++L +
Sbjct: 270 LSGFWDAVPAYLPAV-----YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV--L 322
Query: 309 DNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLK 368
D I +E + + L L + + L S+ P L+
Sbjct: 323 DYIEDAGLEVLASTCKD-----LRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLE 375
Query: 369 SLYVYGCSKL--ESIAERLDNNTSLETISIERCGNLKI-----------LPSGLHNLRQL 415
S+ +Y C ++ ++ N ++ + + + + + L
Sbjct: 376 SV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434
Query: 416 QGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475
+ + + F G K+ L ++ + G H L +L L I
Sbjct: 435 RRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH---VLSGCDSLRKLEIRDC 491
Query: 476 MEIWKSMIERGRGFHRFSSLRHLTIRGC 503
K+++ + ++R L + C
Sbjct: 492 PFGDKALLA---NASKLETMRSLWMSSC 516
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 60/441 (13%), Positives = 126/441 (28%), Gaps = 56/441 (12%)
Query: 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLC 198
R PK+ +E+K + + + +S L+ +
Sbjct: 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI------------- 110
Query: 199 ELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSL--VSFPEVALP-SKLKNIW 255
RL+ + +++ + L + + S + + + + C +A LK +
Sbjct: 111 ----RLKRMVVTD-DCLELI---AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 256 ISTCDALKSLPEAW--MCDTNSSLEILSIHGCRSLTYIAAVQL----PPSLKQLSISDCD 309
+ D DT +SL L+I S +A++ P+LK L ++
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222
Query: 310 NIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKS 369
+ L LE L + + L L L+
Sbjct: 223 PLEKLATLLQRAPQ-------LEELGTGGYTAEVRPDVYSGLSVALSGC------KELRC 269
Query: 370 LYVYGCSKLESIAERLDNNTSLETISIERCG----NLKILPSGLHNLRQLQGIKIWNCGN 425
L + + + + L T+++ +L L L++L +
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAG 329
Query: 426 LVSFPEGGLPCAKLRRLDISDCKRLEGGFHRY-----MIAL-HNLTNLHSLYIGGNMEIW 479
L C LR L + + + ++++ L S+
Sbjct: 330 LEVLAST---CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386
Query: 480 KSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539
++I R + R I D ++ D G + L L +S +
Sbjct: 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK 446
Query: 540 RLSSSIVDLQNLTELVLVNCP 560
+ + L +
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAG 467
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 48/305 (15%), Positives = 91/305 (29%), Gaps = 29/305 (9%)
Query: 268 AWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYT 327
+W + I C +++ ++ P ++ + + + + Y
Sbjct: 36 SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLV--PDGWGGYV 93
Query: 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLE-VGNLPPSLKSLYVYGCSKL--ESIAER 384
+E + SS L I K + T + LE + + K L + C + +A
Sbjct: 94 YPWIEAM-SSSYTWLEEIRLKR-MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI 151
Query: 385 LDNNTSLETISIERCGNLKILPSGL----HNLRQLQGIKIWNCGNLVSFPEGGLP----- 435
+L+ + + + L L + I + VSF L
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF--SALERLVTR 209
Query: 436 CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495
C L+ L ++ LE L L L GG + + G
Sbjct: 210 CPNLKSLKLNRAVPLEKLAT----LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265
Query: 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL-ERLSSSIVDLQNLTEL 554
+ G D + L + + LTTL +S L + L L
Sbjct: 266 ELRCLSGFWDAV------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319
Query: 555 VLVNC 559
+++
Sbjct: 320 WVLDY 324
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 60/418 (14%), Positives = 124/418 (29%), Gaps = 75/418 (17%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTC 259
RL+ L L+ L+ + +++LS +L+ + + + S + L L+++++ +
Sbjct: 82 RLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSN 139
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYI--AAVQLPPSLKQLSISDCDN------- 310
+ S+ L++L + Y+ + LS++ N
Sbjct: 140 -HISSIKLP-KGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196
Query: 311 --IRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI-FSKNELPATLESLEVGNLPPSL 367
+ + + + + L S+ SL F + ++ G S+
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256
Query: 368 KSLYVYGCS-----------------------KLESIAERLDNNTSLETISIERCGNLKI 404
+S+ + L + L ++L+ + + +
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFEN 315
Query: 405 LPSG-LHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALH 462
L N L + I + G L LR LD+S L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL--QLR 373
Query: 463 NLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522
NL++L SL + N ++ F L L + L+ K +
Sbjct: 374 NLSHLQSLNLSYNEP---LSLKTE-AFKECPQLELLDLAFT-------RLKVKDAQSPFQ 422
Query: 523 LPASLTTLWISR-------------FPNLERL---SSSIVDLQNLTELVLVNCPKLKY 564
L L +S P L+ L + L +L+
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 54/305 (17%), Positives = 98/305 (32%), Gaps = 39/305 (12%)
Query: 271 CDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL 330
C + + L I LP S + L S + T+ + R +
Sbjct: 8 CIEKEVNKTYNCEN-LGLNEIPG-TLPNSTECLEFSFN-VLPTIQNT----TFSRLIN-- 58
Query: 331 LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTS 390
L LD++ C + I T +S L +L + + L +
Sbjct: 59 LTFLDLTRC-QIYWI-----HEDTFQSQ------HRLDTLVLTANPLIFMAETALSGPKA 106
Query: 391 LETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKR 449
L+ + + G I LHN + L+ + + + ++ S P KL+ LD +
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA- 164
Query: 450 LEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS 509
+ M +L TNL SL + GN + G + + L G + +V
Sbjct: 165 IHYLSKEDMSSLQQATNL-SLNLNGN-----DIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218
Query: 510 FP----LEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQN-----LTELVLVNCP 560
F + L + + F L +S ++LQ ++
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278
Query: 561 KLKYF 565
L+
Sbjct: 279 GLQEL 283
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 37/283 (13%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTC 259
L+ L LS + L Q S S SL + I + + L L+ + +S
Sbjct: 302 TLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Query: 260 DALKSLPEAWMCDTN-SSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTLTV 316
D +++ + N S L+ L++ + P L+ L ++ ++
Sbjct: 361 D-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFT-RLKVKDA 417
Query: 317 EEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 376
+ Q+ L+ L++S L + L P+L+ L + G
Sbjct: 418 QSPFQNLHL-----LKVLNLSHS-LLDISS-----EQLFDGL------PALQHLNLQGNH 460
Query: 377 ---KLESIAERLDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPEG 432
L LE + + C +L + +L+ + + + + L S
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIE 518
Query: 433 GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475
L K L+++ + L L+ ++ + N
Sbjct: 519 ALSHLKGIYLNLAS-NHISIILPS---LLPILSQQRTINLRQN 557
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 58/275 (21%), Positives = 88/275 (32%), Gaps = 54/275 (19%)
Query: 204 LEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALK 263
L L +S + L LP L L L P LPS L +WI L
Sbjct: 83 LRTLEVSGNQ-LTSLPVLPPGLLELSIFSN----PLTHLPA--LPSGLCKLWIFGNQ-LT 134
Query: 264 SLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSS 323
SLP L+ LS+ + L + A LP L +L + + +L
Sbjct: 135 SLPVLP-----PGLQELSVSDNQ-LASLPA--LPSELCKLWAYNN-QLTSL--PMLPSG- 182
Query: 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN--------LPPSLKSLYVYGC 375
L+ L +S L + LP+ L L N LP LK L V G
Sbjct: 183 -------LQELSVSDN-QLASLP---TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN 231
Query: 376 SKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN--LVSFPEGG 433
+L S+ + L+ + + L LP L L + L PE
Sbjct: 232 -RLTSLPVLP---SELKELMVSGN-RLTSLPMLPSGLLSL------SVYRNQLTRLPESL 280
Query: 434 LPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTN 466
+ + +++ R + + +
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSG 315
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 67/277 (24%), Positives = 97/277 (35%), Gaps = 68/277 (24%)
Query: 331 LEHLDISSCPSLTCIFSKNELPATLESLEVGN--------LPPSLKSLYVYGCSKLESIA 382
L++ LT + + LPA + +L + + LPP L++L V G +L S+
Sbjct: 42 NAVLNVGES-GLTTL--PDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGN-QLTSLP 97
Query: 383 ERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRL 442
L S +L LPSGL L + G + L S P L+ L
Sbjct: 98 VLPPGLLELSIFSN-PLTHLPALPSGLCKLW-IFGNQ------LTSLPVL---PPGLQEL 146
Query: 443 DISDCK--RLEGGFH--RYMIALHN--------LTNLHSLYIGGN--MEIWKSMIERGRG 488
+SD + L + A +N + L L + N +
Sbjct: 147 SVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL------- 199
Query: 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP-LPASLTTLWISRFPNLERLSSSIVD 547
S L L RL T+LP LP+ L L +S L L
Sbjct: 200 ---PSELYKLWAYNN------------RL-TSLPALPSGLKELIVS-GNRLTSLPVLP-- 240
Query: 548 LQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
L EL++ +L P LPS LL L +Y L
Sbjct: 241 -SELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQL 273
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 57/347 (16%), Positives = 112/347 (32%), Gaps = 60/347 (17%)
Query: 249 SKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDC 308
++ + + ++ + + + L + I V+ +L Q++ S+
Sbjct: 24 AEKMKTVLGKTNVTDTVSQTDL----DQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNN 78
Query: 309 DNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN-----L 363
+ +T + + L + +++ + I L L L + N +
Sbjct: 79 -QLTDITPLKNLTK--------LVDILMNNNQ-IADITPLANLT-NLTGLTLFNNQITDI 127
Query: 364 PP-----SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGI 418
P +L L + + I L TSL+ +S GN L NL L+ +
Sbjct: 128 DPLKNLTNLNRLELSSN-TISDI-SALSGLTSLQQLSF---GNQVTDLKPLANLTTLERL 182
Query: 419 KIWNCGNLVSFPE-GGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNME 477
I + + L L L ++ + + + L LTNL L + GN
Sbjct: 183 DISSN-KVSDISVLAKLT--NLESLIATNNQ-ISD-----ITPLGILTNLDELSLNGN-- 231
Query: 478 IWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN 537
++ ++L L + + + L LT L + N
Sbjct: 232 ----QLKDIGTLASLTNLTDLDLANN-------QISNL---APLSGLTKLTELKLGA--N 275
Query: 538 LERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
S + L LT L L +L+ +L L +Y +
Sbjct: 276 QISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNI 321
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 45/303 (14%), Positives = 102/303 (33%), Gaps = 58/303 (19%)
Query: 204 LEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIW----ISTC 259
L L L N + + + +L++L +E+ + + ++ + L+ + ++
Sbjct: 114 LTGLTLFNNQ-ITDIDPLK-NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDL 170
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG 319
L +L +LE L I + ++ I+ + +L+ L ++ I +T
Sbjct: 171 KPLANLT---------TLERLDISSNK-VSDISVLAKLTNLESLIATNN-QISDITPLGI 219
Query: 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379
+ + L+ L ++ L I TL SL +L L + ++
Sbjct: 220 LTN--------LDELSLNGN-QLKDI-------GTLASL------TNLTDLDLANN-QIS 256
Query: 380 SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKL 439
++A L T L + + + + L L L + N + L
Sbjct: 257 NLAP-LSGLTKLTELKLGAN-QISNIS-PLAGLTALT--NLELNENQLEDISPISNLKNL 311
Query: 440 RRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLT 499
L + + + + +LT L L+ N + +++ L+
Sbjct: 312 TYLTLYFNN-ISD-----ISPVSSLTKLQRLFFYNN------KVSDVSSLANLTNINWLS 359
Query: 500 IRG 502
Sbjct: 360 AGH 362
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 78/446 (17%), Positives = 145/446 (32%), Gaps = 105/446 (23%)
Query: 136 LKPRIPKLEEL------------EIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQ 183
L P LE L +++++ + L L+ L +++ +L+
Sbjct: 86 LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLE 144
Query: 184 SLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP 243
L +L S L+ + + N L KLP SL + + L P
Sbjct: 145 KL---------PELQNSSF-LKIIDVDNNS-LKKLPDLPPSLEFIA----AGNNQLEELP 189
Query: 244 EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQL 303
E+ L I+ LK LP+ SLE + L + +Q P L +
Sbjct: 190 ELQNLPFLTAIYADNNS-LKKLPDLP-----LSLESIVAGNNI-LEELPELQNLPFLTTI 242
Query: 304 SISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN- 362
+ ++TL LE L++ LT + ELP +L L+V
Sbjct: 243 YADNN-LLKTLPDL----------PPSLEALNVRDN-YLTDL---PELPQSLTFLDVSEN 287
Query: 363 -------LPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL 415
LPP+L L ++ S+ + SLE +++ L LP+ L +L
Sbjct: 288 IFSGLSELPPNLYYLNASSN-EIRSLCDLP---PSLEELNVSNN-KLIELPALPPRLERL 342
Query: 416 QGIKIWNCGN--LVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHN-LTNLHSLYI 472
L PE L++L + + + ++ L +
Sbjct: 343 ------IASFNHLAEVPEL---PQNLKQLHVEYNP---------LREFPDIPESVEDLRM 384
Query: 473 GGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWI 532
++ + +L+ L + + FP +P S+ L +
Sbjct: 385 NSHLAEVPELP---------QNLKQLHVETNP--LREFP----------DIPESVEDLRM 423
Query: 533 SRFPNLERLSSSIVDLQNLTELVLVN 558
+ ++ + L + V +
Sbjct: 424 NSERVVDPYEFAHETTDKLEDDVFEH 449
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 84/418 (20%), Positives = 131/418 (31%), Gaps = 107/418 (25%)
Query: 209 LSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVA--------------LPSKLKNI 254
L + L ++P + ++ S E + P L + +
Sbjct: 17 LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76
Query: 255 WISTCDALKSLPEAWMCDTNSSLEILSIHG------------CRSLTYIAA-----VQLP 297
++ L SLPE LE L +SL LP
Sbjct: 77 ELNNLG-LSSLPELP-----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130
Query: 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357
P L+ L +S+ + L + L+ +D+ + SL + +LP +LE
Sbjct: 131 PLLEYLGVSNN-QLEKLPELQNSSF--------LKIIDVDNN-SLKKLP---DLPPSLEF 177
Query: 358 LEVGN-----LP-----PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS 407
+ GN LP P L ++Y L+ + + SLE+I L+ LP
Sbjct: 178 IAAGNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLP---LSLESIVAGNN-ILEELPE 232
Query: 408 GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNL 467
L NL L I N L + P+ L L++ D +LT L
Sbjct: 233 -LQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDNY-----LTDLPELPQSLTFL 282
Query: 468 HSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASL 527
+ +L +L + + LP SL
Sbjct: 283 DVSENIFS-----------GLSELPPNLYYLNASSN------------EIRSLCDLPPSL 319
Query: 528 TTLWISRFPN-LERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
L +S N L L + L L+ L PE LP +L QL + PL
Sbjct: 320 EELNVSN--NKLIELPALP---PRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPL 369
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 37/222 (16%), Positives = 66/222 (29%), Gaps = 51/222 (22%)
Query: 366 SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425
L+ + S L + +N S + P G R++ ++ +C
Sbjct: 12 FLQEPLRH-SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-- 68
Query: 426 LVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIAL-HNLTNLHSLYIGGNM--EIWKSM 482
+ L++++ + +L +L SL N E+ +
Sbjct: 69 ---------LDRQAHELELNNLG---------LSSLPELPPHLESLVASCNSLTELPEL- 109
Query: 483 IERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS 542
SL+ L + K L LP L L +S N
Sbjct: 110 ---------PQSLKSLLVDN---------NNLKALSD---LPPLLEYLGVSN--NQLEKL 146
Query: 543 SSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
+ + L + + N LK P+ LP SL + L
Sbjct: 147 PELQNSSFLKIIDVDNN-SLKKLPD--LPPSLEFIAAGNNQL 185
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 7e-09
Identities = 63/366 (17%), Positives = 116/366 (31%), Gaps = 77/366 (21%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDA 261
L++L LS CE + + + L L + + + SF +
Sbjct: 57 ELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN-PIQSFSP---------------GS 99
Query: 262 LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTLTVEEG 319
L SLE L L + + + +LK+L+++ I + +
Sbjct: 100 FSGLT---------SLENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY 148
Query: 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379
+ L H+D+S + I L+ L P SL + ++
Sbjct: 149 FSNLTN-----LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDMSLN-PID 194
Query: 380 SIAERLDNNTSLETISIERCGNL-KILPSGLHNLRQLQ-----GIKIWNCGNLVSFPEG- 432
I ++ L +++ N I+ + L NL L + + NL F
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 433 --GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFH 490
GL + ++ H L N+ ++ + G I+
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIV----KFHCLANVSAMSLAGV------SIKYLEDVP 304
Query: 491 RFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQN 550
+ + L+I C L LP L +L ++ N +S V L +
Sbjct: 305 KHFKWQSLSIIRCQLKQFPT----------LDLP-FLKSLTLTM--NKGSISFKKVALPS 351
Query: 551 LTELVL 556
L+ L L
Sbjct: 352 LSYLDL 357
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 65/387 (16%), Positives = 104/387 (26%), Gaps = 68/387 (17%)
Query: 160 SHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP 219
N +I T L L + LE S EGL +
Sbjct: 212 RGNFNSSNIMK------TCLQNLAGL---HVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262
Query: 220 QSSLSLSSLREIEICKCS---------------SLVSFPEVALPSKLKNIWISTCDALKS 264
L+ + S+ +V K +++ I C LK
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQ 321
Query: 265 LPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSR 324
P + L+ L++ + + PSL L +S + S
Sbjct: 322 FPTLDL----PFLKSLTLTMNK-GSISFKKVALPSLSYLDLSRN-ALSFS--GCCSYSDL 373
Query: 325 RYTSCLLEHLDISS------------CPSLTCI-FSKNELPATLESLEVGNLPPSLKSLY 371
S L HLD+S L + F + L E +L L L
Sbjct: 374 GTNS--LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL-EKLLYLD 430
Query: 372 VYGCSKLESIAERLDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFP 430
+ + TSL T+ + S N L + + C L
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQIS 489
Query: 431 EGGLP-CAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGR 487
G +L+ L++S L+ + L +L +L N I +
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSS------HYNQLYSLSTLDCSFN-RI--ETSKGI- 539
Query: 488 GFHRFSSLRHLTIRG----CDDDMVSF 510
H SL + C + F
Sbjct: 540 LQHFPKSLAFFNLTNNSVACICEHQKF 566
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 65/383 (16%), Positives = 122/383 (31%), Gaps = 79/383 (20%)
Query: 204 LEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTCD 260
+ + LS L L S S S L+ +++ +C + + + A L N+ ++
Sbjct: 34 TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91
Query: 261 ALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTLTVEE 318
++S +SLE L L + + + +LK+L+++ I + +
Sbjct: 92 -IQSFSPGSFSG-LTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSCKLPA 147
Query: 319 GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL 378
+ L H+D+S + I L+ L P SL + +
Sbjct: 148 YFSNLTN-----LVHVDLSYN-YIQTI-----TVNDLQFLR--ENPQVNLSLDMSLN-PI 193
Query: 379 ESIAERLDNNTSLETISIERCGNL-KILPSGLHNLRQLQ-----GIKIWNCGNLVSFPEG 432
+ I ++ L +++ N I+ + L NL L + + NL F
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 433 ---GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGF 489
GL + ++ H L N+ ++ + G I+
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIV----KFHCLANVSAMSLAGVS------IKYLEDV 303
Query: 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQ 549
+ + L+I C + +FP L DL
Sbjct: 304 PKHFKWQSLSIIRCQ---------------------------LKQFPTL--------DLP 328
Query: 550 NLTELVLVNCPKLKYFPEKGLPS 572
L L L F + LPS
Sbjct: 329 FLKSLTLTMNKGSISFKKVALPS 351
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 59/438 (13%), Positives = 115/438 (26%), Gaps = 102/438 (23%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTC 259
L L L+ + S S L+SL + + L S + LK + ++
Sbjct: 81 HLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHN 138
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA------VQLPPSLKQLSISDCDNIRT 313
+ S ++L + + + I + P L +S I
Sbjct: 139 -FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLN-PIDF 195
Query: 314 LTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPP----SLKS 369
+ + L L + + + I L L V L ++
Sbjct: 196 IQDQAFQGIK-------LHELTLRGNFNSSNIMK--TCLQNLAGLHVHRLILGEFKDERN 246
Query: 370 LYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF 429
L ++ S +E + + +++ + + H L + + G + +
Sbjct: 247 LEIFEPSIMEGLC-----DVTIDEFRLTYTNDFSDDIVKFHCLANVS--AMSLAGVSIKY 299
Query: 430 PEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGF 489
E K + L I C+ + +L L SL + N
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQ-------FPTLDLPFLKSLTLTMNK------GSISFKK 346
Query: 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPA-SLTTLWISR------------FP 536
SL +L + L + L SL L +S
Sbjct: 347 VALPSLSYLDLSRN-------ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399
Query: 537 NLERL------------SSSIVDLQNLTEL-------------VLVNCPKLKY------- 564
L+ L S+ + L+ L L + + L
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459
Query: 565 ---FPEKGLPSSLLQLQI 579
+ ++ L
Sbjct: 460 FKDNTLSNVFANTTNLTF 477
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 48/340 (14%), Positives = 91/340 (26%), Gaps = 53/340 (15%)
Query: 271 CDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL 330
C + L+ + +P S K + +S ++ L S ++
Sbjct: 7 CIEVVPNITYQCMD-QKLSKVPD-DIPSSTKNIDLSFN-PLKILKSY----SFSNFSE-- 57
Query: 331 LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTS 390
L+ LD+S C + I L L +L + G TS
Sbjct: 58 LQWLDLSRC-EIETIE-----DKAWHGL------HHLSNLILTGNPIQSFSPGSFSGLTS 105
Query: 391 LETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGL--PCAKLRRLDISDCK 448
LE + + + L L+ + + + + S L +D+S
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 449 ---------RLEGGFHRYMIALH--------------NLTNLHSLYIGGNMEIWKSMIER 485
+ + ++L LH L + GN M
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM--- 221
Query: 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPA-SLTTLWISRFPNLERLSSS 544
+ L + + LE L ++ ++ +
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDER-NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 545 IVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
L N++ + L +KY + L I C L
Sbjct: 281 FHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL 319
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 60/363 (16%), Positives = 124/363 (34%), Gaps = 70/363 (19%)
Query: 204 LEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTC---- 259
L + Q L S+ ++ + + S + + L+ + ++
Sbjct: 24 GIRAVLQKASVTDVVTQEELE--SITKLVVAGEK-VASIQGIEYLTNLEYLNLNGNQITD 80
Query: 260 -DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEE 318
L +L L L I + +T I+A+Q +L++L +++ NI ++
Sbjct: 81 ISPLSNLV---------KLTNLYIGTNK-ITDISALQNLTNLRELYLNED-NISDISPLA 129
Query: 319 GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL 378
+ + L++ + +L+ + L ++ L L V K+
Sbjct: 130 NLTK--------MYSLNLGANHNLS-------DLSPLSNM------TGLNYLTVTES-KV 167
Query: 379 ESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE-GGLPCA 437
+ + + N T L ++S+ ++ + S L +L L + + +
Sbjct: 168 KDVTP-IANLTDLYSLSLNYN-QIEDI-SPLASLTSLHYFTAYVN-QITDITPVANMT-- 221
Query: 438 KLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRH 497
+L L I + ++ + L NL+ L L IG N I + L+
Sbjct: 222 RLNSLKIGNN-KITD-----LSPLANLSQLTWLEIGTNQ------ISDINAVKDLTKLKM 269
Query: 498 LTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLV 557
L + +S L + L L +L+++ I L NLT L L
Sbjct: 270 LNVGSNQISDIS-VLNN--------LS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319
Query: 558 NCP 560
Sbjct: 320 QNH 322
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 9e-08
Identities = 60/325 (18%), Positives = 111/325 (34%), Gaps = 75/325 (23%)
Query: 275 SSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHL 334
S+ L + G + + I ++ +L+ L+++ I ++ + L +L
Sbjct: 44 ESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGN-QITDISPLSNLVK--------LTNL 93
Query: 335 DISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETI 394
I + N++ + +L NL +L+ LY+ + I+ L N T + ++
Sbjct: 94 YIGT----------NKI-TDISAL--QNLT-NLRELYLNED-NISDISP-LANLTKMYSL 137
Query: 395 SIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE-GGLPCAKLRRLDISDCKRLEGG 453
++ NL S L N+ L + + + L L L ++ ++E
Sbjct: 138 NLGANHNLSD-LSPLSNMTGLNYLTVTES-KVKDVTPIANLT--DLYSLSLNYN-QIED- 191
Query: 454 FHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLE 513
+ L +LT+LH N I + L L I +S PL
Sbjct: 192 ----ISPLASLTSLHYFTAYVN------QITDITPVANMTRLNSLKIGNNKITDLS-PLA 240
Query: 514 DKRLGTALPLPASLTTLWIS-----------RFPNLERLS---------SSIVDLQNLTE 553
+ L LT L I L+ L+ S + +L L
Sbjct: 241 N------LS---QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNS 291
Query: 554 LVLVNCPKLKYFPEKGLPSSLLQLQ 578
L L N +L + + L L
Sbjct: 292 LFLNNN-QLGNEDMEVI-GGLTNLT 314
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 53/384 (13%), Positives = 124/384 (32%), Gaps = 98/384 (25%)
Query: 139 RIPKLEELEIKNIENETYVWKSHNEL--LQDICSLKRLT--------ITSCPKLQSLVAE 188
I ++ ++ + + L+ +T + S ++ L
Sbjct: 11 PINQIFPDA--DLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYL--- 65
Query: 189 EEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ-SSLSLSS--LREIE-ICKCSSLVSFPE 244
L L+ L ++++ L L + ++L + + + +I + ++L
Sbjct: 66 ------TNLEYLN--LNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL-- 115
Query: 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLS 304
L IS L +L + L++ +L+ ++ + L L+
Sbjct: 116 -----YLNEDNISDISPLANLT---------KMYSLNLGANHNLSDLSPLSNMTGLNYLT 161
Query: 305 ISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISS-----------CPSLTCIF-SKNELP 352
+++ ++ +T + L L ++ SL N++
Sbjct: 162 VTES-KVKDVTPIANLTD--------LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI- 211
Query: 353 ATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETI-----------SIERCGN 401
+ + N+ L SL + K+ ++ L N + L + +++
Sbjct: 212 TDITPV--ANMT-RLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTK 266
Query: 402 LKIL---------PSGLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLE 451
LK+L S L+NL QL + + N L + + L L +S +
Sbjct: 267 LKMLNVGSNQISDISVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-IT 324
Query: 452 GGFHRYMIALHNLTNLHSLYIGGN 475
+ L +L+ + S
Sbjct: 325 D-----IRPLASLSKMDSADFANQ 343
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 6e-08
Identities = 59/392 (15%), Positives = 128/392 (32%), Gaps = 49/392 (12%)
Query: 139 RIPKLEELEIKNIENETYVWKSHNEL--------LQDICSLKRLTITSCPKLQSLVAEEE 190
+ LE I +++ + +HN + ++ +L+ L ++S K+QS+
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSI----Y 165
Query: 191 KDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPS- 249
+ L ++ L LS + + + L ++ + ++ + +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 250 ------KLKNIWISTCDALKSLPEAWMCD-TNSSLEILSIHGCRSLTYIAAVQLPPSLKQ 302
+L L+ ++ + N ++E + + L L
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL-DYYLDDIIDLFNCLTN 283
Query: 303 LSISDCDNIRTLTVEEGIQSSR----RYTSCLLEHLDISSCPSLTCI-FSKNELPATLES 357
+S ++ V++ + +C SL + F+ N+ +
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG----GN 339
Query: 358 LEVGNLPPSLKSLYVYGC--SKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL 415
PSL+ L + S ++ TSL+ + + + + S L QL
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQL 398
Query: 416 QGIKIWNCGNLVSFPEGGL--PCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLY 471
+ + + NL E + L LDIS G + L++L L
Sbjct: 399 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------IFNGLSSLEVLK 451
Query: 472 IGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503
+ GN ++ F +L L + C
Sbjct: 452 MAGNS--FQENFLPD-IFTELRNLTFLDLSQC 480
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 53/330 (16%), Positives = 110/330 (33%), Gaps = 52/330 (15%)
Query: 168 ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLS-LS 226
+ L + L+ +K + LC L+ +E RL+ + + + L+
Sbjct: 229 VHRLVLGEFRNEGNLEKF----DKSALEGLCNLT--IEEFRLAYLDYYLDDIIDLFNCLT 282
Query: 227 SLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR 286
++ + + + + + +++ + C P + SL+ L+ +
Sbjct: 283 NVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK-FGQFPTLKL----KSLKRLTFTSNK 336
Query: 287 SLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSC------- 339
+ V LP SL+ L +S + S TS L++LD+S
Sbjct: 337 GGNAFSEVDLP-SLEFLDLSRN-GLSFKGCCSQ--SDFGTTS--LKYLDLSFNGVITMSS 390
Query: 340 -----PSLTCI-FSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESI-AERLDNNTSLE 392
L + F + L + V +L L + + +SLE
Sbjct: 391 NFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLE 448
Query: 393 TISIERCGNLK--ILPSGLHNLRQLQGIKIWNCGNLVSFPEG---GLPCAKLRRLDISDC 447
+ + + + LP LR L + + C L L L+ L+++
Sbjct: 449 VLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS--SLQVLNMASN 504
Query: 448 K--RLEGGFHRYMIALHNLTNLHSLYIGGN 475
+ + G LT+L +++ N
Sbjct: 505 QLKSVPDG------IFDRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 56/295 (18%), Positives = 99/295 (33%), Gaps = 66/295 (22%)
Query: 286 RSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI 345
+ I LP S K L +S +R L S + L+ LD+S C + I
Sbjct: 17 LNFYKIPD-NLPFSTKNLDLSFN-PLRHLGSY----SFFSFPE--LQVLDLSRC-EIQTI 67
Query: 346 FSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAER-LDNNTSLETISIERCGNLKI 404
+SL L +L + G + ++S+A +SL+ + NL
Sbjct: 68 -----EDGAYQSL------SHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET-NLAS 114
Query: 405 LPSG-LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHN 463
L + + +L+ L+ + + N ++ + + N
Sbjct: 115 LENFPIGHLKTLKELNV--AHN------------LIQSFKLPE-------------YFSN 147
Query: 464 LTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523
LTNL L + N +S+ L + + D+ P+ + G +
Sbjct: 148 LTNLEHLDLSSNK--IQSIYCTD-----LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 524 PASLTTLWISR-FPNLERLSSSIVDLQNLTELVLV-----NCPKLKYFPEKGLPS 572
L L + F +L + + I L L LV N L+ F + L
Sbjct: 201 --RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 60/325 (18%), Positives = 114/325 (35%), Gaps = 72/325 (22%)
Query: 202 CRLEYLRLSNC--EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTC 259
L++L +S G ++ + + L+ + I + P + L S L+ + ++
Sbjct: 223 SALQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAEN 279
Query: 260 DALKSLPEAWMCDTNSSLEILSIHG-------------CRSLTYIAAV--QLPPSLKQLS 304
+P+ ++ +L L + G C L +A L +
Sbjct: 280 KFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 305 ISDCDNIRTLTVEE-----GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLE 359
+ ++ L + + S S L LD+SS + + N +L+
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQ 397
Query: 360 V---------GNLPPSLKSLYVYGCSKLESIAERLDNNTSLE-TI--SIERCGNLKIL-- 405
G +PP+L + CS+L S+ L N L TI S+ L+ L
Sbjct: 398 ELYLQNNGFTGKIPPTLSN-----CSELVSL--HLSFN-YLSGTIPSSLGSLSKLRDLKL 449
Query: 406 ---------PSGLHNLRQLQGIKIWNCGNLVSFPEGGLP-----CAKLRRLDISDCKRLE 451
P L ++ L+ + + +L G +P C L + +S+ + L
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFN-DL----TGEIPSGLSNCTNLNWISLSNNR-LT 503
Query: 452 GGFHRYMIALHNLTNLHSLYIGGNM 476
G + + L NL L + N
Sbjct: 504 GEIPK---WIGRLENLAILKLSNNS 525
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 47/295 (15%), Positives = 92/295 (31%), Gaps = 60/295 (20%)
Query: 201 SCRLEYLRLSNC--EGLVKLPQSSLSLSSLREIEI--CKCSSLVSFPEVALPSKLKNIWI 256
S L L LS G V S S S L+ + + + L+ + +
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 257 STCDALKSLPEAWMCDTN-SSLEILSIHGCRSLT-YIAAVQLPPSLKQLSISDCDNIRTL 314
S + W+ L+ L+I G ++ + + +L+ L +S +
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVSRCV-NLEFLDVSSNN----F 212
Query: 315 TVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 374
+ I ++ L+HLDIS L+ G+ ++ +
Sbjct: 213 STG--IPFLGDCSA--LQHLDISGN-KLS-----------------GDFSRAIST----- 245
Query: 375 CSKLESIAERLDNNTSLE-TISIERCGNLKIL------------PSGLHNLRQLQGIKIW 421
C++L+ + + +N I +L+ L L G+ +
Sbjct: 246 CTELKLL--NISSN-QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 422 NCGNLV-SFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475
+ + P C+ L L +S G + + L L + N
Sbjct: 303 GN-HFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLL--KMRGLKVLDLSFN 353
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 54/303 (17%), Positives = 102/303 (33%), Gaps = 53/303 (17%)
Query: 203 RLEYLRLSNC---EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTC 259
++ + LS+ G + S LSL+ L + + S + L ++ +S
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTY---IAAVQLPPSLKQLSISDCDNIRTLTV 316
+ + S L+ L++ +L + ++ SL+ L +S ++
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANS----ISG 165
Query: 317 EEGIQSSRRYTSCL--LEHLD-----------ISSCPSLTCI-FSKNELPATLESLEVGN 362
+ L+HL +S C +L + S N + L G+
Sbjct: 166 A--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL--GD 221
Query: 363 LPPSLKSLYVYGCSKLE-SIAERLDNNTSLETISIERCGNL--KILPSGLHNLRQLQGIK 419
+L+ L + G KL + + T L+ ++I I P L +L+ L
Sbjct: 222 CS-ALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLPLKSLQYLS--- 275
Query: 420 IWNCGNLVSFPEGGLP------CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIG 473
+ G +P C L LD+S G + + L SL +
Sbjct: 276 LAEN-KF----TGEIPDFLSGACDTLTGLDLSGNH-FYGAVPP---FFGSCSLLESLALS 326
Query: 474 GNM 476
N
Sbjct: 327 SNN 329
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 43/263 (16%), Positives = 80/263 (30%), Gaps = 68/263 (25%)
Query: 331 LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTS 390
+ +D+SS L FS + ++L SL L+SL++ S++ + S
Sbjct: 52 VTSIDLSSK-PLNVGFS--AVSSSLLSL------TGLESLFLSNSHINGSVSG-FKCSAS 101
Query: 391 LETISIERCGNLKILPSG--LHNLRQLQGIKIWNCGNLVSFP-EGGLPCAKLRRLDISDC 447
L ++ + R + + L + L+ + + + GGL L LD+S
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 448 KRLEGGFHRYMIALHNLTNLHSLYIGGNM---EIWKSMIERGRGFHRFSSLRHLTIRGCD 504
+ G + L L I GN ++ R +L L +
Sbjct: 162 S-ISGANVVGWVLSDGCGELKHLAISGNKISGDV---------DVSRCVNLEFLDVSSN- 210
Query: 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS-----------SSIVDLQNLTE 553
T +P ++ L+ L +I L
Sbjct: 211 -----------NFSTGIP--------FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 554 LVL-----------VNCPKLKYF 565
L + + L+Y
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYL 274
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 57/387 (14%), Positives = 113/387 (29%), Gaps = 72/387 (18%)
Query: 204 LEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALPS--KLKNIWISTCD 260
E L LS + + SS L L+ +E+ + ++ + A + L+ + + +
Sbjct: 26 TERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 261 ALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP-------PSLKQLSISDCDNIRT 313
+ L L L ++ C ++ L +L +L +S IR+
Sbjct: 85 -IYFLHPDAFQG-LFHLFELRLYFCG----LSDAVLKDGYFRNLKALTRLDLSKN-QIRS 137
Query: 314 LTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPP-SLKSLYV 372
L + L+ +D SS + + P ++L +L SL S
Sbjct: 138 LYLHPSFGKLNS-----LKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 373 YGCSKLESIAERL--------DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCG 424
K + + N +++ K L + G
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH- 250
Query: 425 NLVSFPEG---GLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGN--ME 477
N+ + GL + +R LD+S L L +L L + N +
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------VFETLKDLKVLNLAYNKINK 304
Query: 478 IWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN 537
I F+ +L+ L + L + P
Sbjct: 305 IADEA------FYGLDNLQVLNLSYNLLG-------------------ELYSSNFYGLPK 339
Query: 538 LERLSSSIVDLQNLTELVLVNCPKLKY 564
+ + + + + KL+
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQT 366
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 61/435 (14%), Positives = 123/435 (28%), Gaps = 108/435 (24%)
Query: 203 RLEYLRLSNCEGLVKLPQSS---LSLSSLREIEICKCS--SLVSFPEVALPSKLKNIWIS 257
L+ + S+ + + + + L +L + S S VS + +N+ +
Sbjct: 149 SLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207
Query: 258 TCD----ALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRT 313
D + S + S+ + + +
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----------GFGFHNIKDPDQ 257
Query: 314 LTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVY 373
T +SS + HLD+S + + E+L LK L +
Sbjct: 258 NTFAGLARSS-------VRHLDLSHG-FVFSL-----NSRVFETL------KDLKVLNLA 298
Query: 374 GCSKLESIAER-LDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPE 431
K+ IA+ +L+ +++ L L S + L ++ I + ++ +
Sbjct: 299 YN-KINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQD 355
Query: 432 GGL-PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN--------------- 475
KL+ LD+ D + +H + ++ +++ GN
Sbjct: 356 QTFKFLEKLQTLDLRDNA---------LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406
Query: 476 --MEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWIS 533
E ++ R L+ L + S SL L++
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-------QTPSENPSLEQLFLG 459
Query: 534 R------------------FPNLERL-----------SSSIVDLQNLTELVLVNCPKLKY 564
+L+ L L L L L + +L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTV 518
Query: 565 FPEKGLPSSLLQLQI 579
LP++L L I
Sbjct: 519 LSHNDLPANLEILDI 533
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 70/490 (14%), Positives = 142/490 (28%), Gaps = 88/490 (17%)
Query: 50 PKLRELHI----ISCSKLQGTFPEHLPALEMLVIEGCE----ELLVSVASLPALCKFEIG 101
L EL + +S + L+ + +L AL L + + L S L +L +
Sbjct: 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156
Query: 102 GCK-KVVWRSATDHLGSQNSVVCRDTSNQ-------VFLAGPLKPRIPKLEELEIKNIEN 153
+ +V + L + +N + R LE L++
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Query: 154 ETYVWKSHNELLQDICSLKRLTITSCPKLQSL------VAEEEKDQQQQLCELSCRLEYL 207
I + ++ + + + +++ L S + +L
Sbjct: 217 TV---DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHL 271
Query: 208 RLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTCDALKS 264
LS+ + L L L+ + + + + A L+ + +S L
Sbjct: 272 DLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL-LGE 328
Query: 265 LPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTLTVEEGIQS 322
L + + + + + I L+ L + D + T I
Sbjct: 329 LYSSNFYG-LPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN-ALTT------IHF 379
Query: 323 SRRYTSCLLEHLDISSCPSLTCIFSKNEL---PATLESLEVGNLPPSLKSLYVYGCSKLE 379
L + + P + + N + LE+L++ + L
Sbjct: 380 IPSIPDIFLSGNKLVTLPKIN--LTANLIHLSENRLENLDILYFLLRVPHL--------- 428
Query: 380 SIAERLD-NNTSLETISIERCGNLKILPSGLHNLRQLQ----GIKIWNCGNLVSFPEGGL 434
+ L N + S ++ PS +L QL +++ L GL
Sbjct: 429 ---QILILNQNRFSSCSGDQ------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479
Query: 435 PCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRF 492
L+ L ++ L G +LT L L + N +
Sbjct: 480 S--HLQVLYLNHNYLNSLPPG------VFSHLTALRGLSLNSN------RLTVLSHNDLP 525
Query: 493 SSLRHLTIRG 502
++L L I
Sbjct: 526 ANLEILDISR 535
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 49/268 (18%), Positives = 92/268 (34%), Gaps = 30/268 (11%)
Query: 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCR---LEYLRLSNCEGLVKLPQ 220
+ S ++Q + + L + + L+ L L +
Sbjct: 77 CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136
Query: 221 SSLSLSSLREIEICKCSSL--VSFPEVALP-SKLKNIWISTCDALKSLPEAWMCDTNS-S 276
+ S+L + + CS + + S+L + +S C S +
Sbjct: 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196
Query: 277 LEILSIHGCRSLTYIAAVQLP----PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLE 332
+ L++ G R + + P+L L +SD ++ +E Q + L+
Sbjct: 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY------LQ 250
Query: 333 HLDISSCPSLT--CIFSKNELPATLESLEVGN---------LPPSLKSLYVYGCSKLESI 381
HL +S C + + E+P TL++L+V L +L L + CS +I
Sbjct: 251 HLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTI 308
Query: 382 AERLDNNTSLETISIERCGNLKILPSGL 409
A N + I +C PS L
Sbjct: 309 ARPTIGNKKNQEIWGIKCRLTLQKPSCL 336
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 28/185 (15%)
Query: 331 LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL--ESIAERLDNN 388
L++L + + + +L L + GCS ++ L +
Sbjct: 120 LQNLSLEGLRL------------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167
Query: 389 TSLETISIERCGNLK---ILPSGLHNLRQLQGIKIWNCGNLVS---FPEGGLPCAKLRRL 442
+ L+ +++ C + + + H + + + + C L L
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227
Query: 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEI-WKSMIERGRGFHRFSSLRHLTIR 501
D+SD L+ L L L + +I ++++E +L+ L +
Sbjct: 228 DLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKTLQVF 280
Query: 502 GCDDD 506
G D
Sbjct: 281 GIVPD 285
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 56/262 (21%), Positives = 99/262 (37%), Gaps = 54/262 (20%)
Query: 176 ITSCPKLQSLVAEEEKDQQQQLCELS--CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEI 233
++ C KLQ+L E + + L+ L L LS C S S +L+ +
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC--------SGFSEFALQTL-- 163
Query: 234 CKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNS-SLEILSIHGCRSLTYIA 292
++ S+L + +S C S ++ L++ G R +
Sbjct: 164 -----------LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212
Query: 293 AVQLP----PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSK 348
+ P+L L +SD ++ +E Q + L+HL +S C +
Sbjct: 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY------LQHLSLSRCYDII----- 261
Query: 349 NELPATLESLEVGNLPPSLKSLYVYGCSK---LESIAERLD----NNTSLETISIERCGN 401
P TL L G + P+LK+L V+G L+ + E L N + TI+ GN
Sbjct: 262 ---PETLLEL--GEI-PTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315
Query: 402 LKILPSGLHNLRQLQGIKIWNC 423
K + ++ ++ +C
Sbjct: 316 KK--NQEIWGIKCRLTLQKPSC 335
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 13/145 (8%)
Query: 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIW 421
NLP S K+L + + + L+ + + RC I +L L + +
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 422 NCGNLVSFPEGGL-PCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEI 478
+ S G + L++L + LE + +L L L + N+
Sbjct: 85 GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENF------PIGHLKTLKELNVAHNLI- 136
Query: 479 WKSMIERGRGFHRFSSLRHLTIRGC 503
+ F ++L HL +
Sbjct: 137 --QSFKLPEYFSNLTNLEHLDLSSN 159
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 69/365 (18%), Positives = 123/365 (33%), Gaps = 74/365 (20%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDA 261
L+ L LS CE + + + LS L + +
Sbjct: 53 ELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP------------------------ 87
Query: 262 LKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTLTVEEG 319
++SL SSL+ L +L + + +LK+L+++ I++ + E
Sbjct: 88 IQSLALGAFSG-LSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY 144
Query: 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379
+ LEHLD+SS + I+ L L +P SL + +
Sbjct: 145 FSNLTN-----LEHLDLSSN-KIQSIY-----CTDLRVLH--QMPLLNLSLDLSLNP-MN 190
Query: 380 SIAERLDNNTSLETISIERCG-NLKILPSGLHNLRQLQGIKIW-----NCGNLVSFPEGG 433
I L +++ +L ++ + + L L+ ++ N GNL F +
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 434 LPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHR 491
L L L I + + L+ + + LTN+ S + IER + F
Sbjct: 251 LE--GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV------TIERVKDFSY 302
Query: 492 FSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNL 551
+HL + C P + ++ N + S VDL +L
Sbjct: 303 NFGWQHLELVNCKF-------------GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Query: 552 TELVL 556
L L
Sbjct: 350 EFLDL 354
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 48/284 (16%), Positives = 83/284 (29%), Gaps = 60/284 (21%)
Query: 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355
LP S K L +S +R L S + L+ LD+S C + I
Sbjct: 26 LPFSTKNLDLSFN-PLRHLGSY----SFFSFPE--LQVLDLSRC-EIQTIE-----DGAY 72
Query: 356 ESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL 415
+SL L +L + G +SL+ + + + +L+
Sbjct: 73 QSL------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-- 124
Query: 416 QGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475
L+ L+++ NLTNL L + N
Sbjct: 125 ----------------------TLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSN 159
Query: 476 --MEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWIS 533
I+ + L + + D+ P+ + G + L L +
Sbjct: 160 KIQSIYCTD---------LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLR 208
Query: 534 R-FPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQ 576
F +L + + I L L LV + S L+
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 50/316 (15%), Positives = 94/316 (29%), Gaps = 49/316 (15%)
Query: 201 SCRLEYLRLSNCEGLVKLPQ------SSLSLSSLREIEICKCSSLVSFPEVALPS----K 250
RL L L N + + + + L + L E +L F + AL
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258
Query: 251 LKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDN 310
++ ++ D +++ S+ ++ + + L + +C
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNC-K 315
Query: 311 IRTLTVEEGIQSSRRYTSCLLEHLDIS--SCPSLTCI-FSKNELPAT-LESLEVGNLPPS 366
+ R + S PSL + S+N L S S
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-S 374
Query: 367 LKSLYVYGCSKLESIAERLDNNTSLETISIERCG--------------NLKIL------- 405
LK L + + +++ LE + + NL L
Sbjct: 375 LKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 406 ----PSGLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIA 460
+ L L+ +K+ +F L LD+S C+ LE A
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT---A 489
Query: 461 LHNLTNLHSLYIGGNM 476
++L++L L + N
Sbjct: 490 FNSLSSLQVLNMSHNN 505
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 45/227 (19%), Positives = 70/227 (30%), Gaps = 33/227 (14%)
Query: 365 PSLKSLYVYGC--SKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWN 422
L L + S ++ TSL+ + + + + S L QL+ + +
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQH 110
Query: 423 CGNLVSFPEGGL--PCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEI 478
NL E + L LDIS G + L++L L + GN
Sbjct: 111 S-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNSFQ 163
Query: 479 WKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN- 537
F +L L + C LE L SL L +S N
Sbjct: 164 --ENFLPD-IFTELRNLTFLDLSQC-------QLEQLSPTAFNSLS-SLQVLNMSH--NN 210
Query: 538 LERLSSSI-VDLQNLTELVLVNCPKLKYFPE---KGLPSSLLQLQIY 580
L + L +L L + + + PSSL L +
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLT 256
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 55/379 (14%), Positives = 120/379 (31%), Gaps = 50/379 (13%)
Query: 155 TYVWKSHNEL----LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLS 210
++ S L + I L + ++ +E+ + Q S + +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLL-VLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 211 NCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWM 270
++ + +++ L I+ + S+ L N +S L ++ W
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS-NLTLNNIETTWN 235
Query: 271 CDT-------NSSLEILSIHGCRSLTYIAAVQLP---PSLKQLSISDCDNIRTLTVEEGI 320
++++ SI + + SLK LSI + + I
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 321 QSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN-----LP-------PSLK 368
+++ +++ +S + + + L+ N L+
Sbjct: 296 YEI--FSNMNIKNFTVSGTRMVHMLCPSK--ISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 369 SLYVYGC--SKLESIAERLDNNTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGN 425
+L + +L IAE SL+ + I + G + L + + +
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-I 410
Query: 426 LVSFPEGGLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMI 483
L LP +++ LD+ K + + L L L + N KS +
Sbjct: 411 LTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVK-------LEALQELNVASNQ--LKS-V 459
Query: 484 ERGRGFHRFSSLRHLTIRG 502
G F R +SL+ + +
Sbjct: 460 PDG-IFDRLTSLQKIWLHT 477
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 55/418 (13%), Positives = 121/418 (28%), Gaps = 73/418 (17%)
Query: 204 LEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKN---IWISTC- 259
LEYL LS+ + LVK+ +L+ +++ ++ + P + + +ST
Sbjct: 71 LEYLDLSHNK-LVKIS--CHPTVNLKHLDLS-FNAFDALPICKEFGNMSQLKFLGLSTTH 126
Query: 260 ------DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRT 313
+ L + + L L + + + I
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESL--HIVFPTNKEFHFILD 183
Query: 314 LTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNE------------LPATLESLEVG 361
++V+ C+LE S S+ N + +
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243
Query: 362 NLPPSLKSLYVYGCSKLESIAERLDN--NTSLETISIERCGN--LKILPSG----LHNLR 413
++ + + R + TSL+ +SI + + S N+
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM- 302
Query: 414 QLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIG 473
++ + + + LD S+ + F +LT L +L +
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKIS--PFLHLDFSNNLLTDTVFE----NCGHLTELETLILQ 356
Query: 474 GNMEIWKSMIERGRGFHRFSSLRHLTIRGC----DDDMVSFP---------LEDKRLGTA 520
N K + + + SL+ L I D+ + L
Sbjct: 357 MNQ--LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 521 LP--LPASLTTLWIS------------RFPNLERLSSSIVDLQNLTELVLVNCPKLKY 564
+ LP + L + + L+ L+ + L+++ + + L+
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 36/181 (19%)
Query: 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357
SL +++++ N+ L GI+ + ++ L I++ T +
Sbjct: 44 NSLTYITLANI-NVTDL---TGIEYAHN-----IKDLTINNI-HATNY-------NPISG 86
Query: 358 LEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQG 417
L +L+ L + G L TSL + I + + + ++ L ++
Sbjct: 87 L------SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140
Query: 418 IKIWNCGNLVSFPE-GGLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGG 474
I + G + LP +L+ L+I G + + L+ LY
Sbjct: 141 IDLSYNGAITDIMPLKTLP--ELKSLNIQFDGVHDYRG--------IEDFPKLNQLYAFS 190
Query: 475 N 475
Sbjct: 191 Q 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 17/141 (12%)
Query: 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCG 424
SL + + + + ++ +++ ++I + + L L+ ++I
Sbjct: 44 NSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99
Query: 425 NLVSFPE--GGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSM 482
GL L LDIS + ++ L ++S+ + N I +
Sbjct: 100 VTSDKIPNLSGLT--SLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAI--TD 151
Query: 483 IERGRGFHRFSSLRHLTIRGC 503
I L+ L I+
Sbjct: 152 IM---PLKTLPELKSLNIQFD 169
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 6e-07
Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 51/238 (21%)
Query: 251 LKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDN 310
LK ++ L S++ + + + + +Q P++ +L ++
Sbjct: 28 LKKKSVTDAVTQNELN---------SIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGN-K 76
Query: 311 IRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI-FSKNELPATLESLEVGNLPPSLKS 369
+ + +++ +L + +N++ L SL+ +L LKS
Sbjct: 77 LTDIK-------------------PLTNLKNLGWLFLDENKI-KDLSSLK--DLK-KLKS 113
Query: 370 LYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF 429
L + + I L + LE++ + I + L L +L + + + N +S
Sbjct: 114 LSLEHN-GISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED--NQISD 167
Query: 430 PEGGLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485
KL+ L +S L L L NL L + + K + +
Sbjct: 168 IVPLAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLELFSQECLNKPINHQ 217
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 8e-05
Identities = 34/218 (15%), Positives = 62/218 (28%), Gaps = 52/218 (23%)
Query: 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCG 424
+ + + S++ I ++K + G+ L + + +
Sbjct: 21 AETIKDNLKK-KSVTDA-VTQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFLNG-- 74
Query: 425 NLVSFPEGGLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSM 482
N ++ + L L + + K L L +L L SL + N I S
Sbjct: 75 NKLTDIKPLTNLKNLGWLFLDENKIKDLSS--------LKDLKKLKSLSLEHN-GI--SD 123
Query: 483 IERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISR-------- 534
I G L L + ++ L L L TL +
Sbjct: 124 IN---GLVHLPQLESLYLGNNKITDIT-VLSR------LT---KLDTLSLEDNQISDIVP 170
Query: 535 ---FPNLERLS---------SSIVDLQNLTELVLVNCP 560
L+ L ++ L+NL L L +
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 70/455 (15%), Positives = 136/455 (29%), Gaps = 83/455 (18%)
Query: 160 SHNELLQDICSLKRLTITSCPKLQSLVAEE---EKDQQQQLCELSCRLEYLRLSNCEGLV 216
S N L SL L+ L + L L+ LR+ N E
Sbjct: 82 SDNHLS----SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137
Query: 217 KLPQSSLS-LSSLREIEICKCSSLVSFPEVALPS--KLKNIWISTCDALKSLPEAWMCDT 273
++ + + L+SL E+EI SL ++ +L S + ++ + + L E D
Sbjct: 138 EIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEI-FADI 194
Query: 274 NSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL--L 331
SS+ L + +L LP + ++ +E + + L
Sbjct: 195 LSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253
Query: 332 EHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSL 391
++ C + L +++ L++ ++ +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 392 ETISIERCGNLKILP----SGLHNLR-------QLQGIKIWNCG---------------- 424
+ I++E + ++P L +L + + N
Sbjct: 313 KRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 425 NLVSFPEGGLPCA---KLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKS 481
+L S + G L LDIS FH + + L +
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNT-----FHPMPDSCQWPEKMRFLNLSSTGI---R 423
Query: 482 MIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISR------- 534
+++ +L L + + D S L L L+ISR
Sbjct: 424 VVKTC----IPQTLEVLDVSNNNLDSFSLFLP------------RLQELYISRNKLKTLP 467
Query: 535 ----FPNLERLSSSIVDLQNLTELVLVNCPKLKYF 565
FP L + S L+++ + + L+
Sbjct: 468 DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 55/373 (14%), Positives = 123/373 (32%), Gaps = 60/373 (16%)
Query: 139 RIPKLEELEIKNIENETYVWKSHNEL-------LQDICSLKRLTITSCP-KLQSLVAEEE 190
+ + +K+I + ++ +E + S++ L +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218
Query: 191 KDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPS- 249
+ + +L+ R L + L+KL + L LS + E + C + L F
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV-EFDDCTLNGLGDFNPSESDVV 277
Query: 250 ---------KLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIA--AVQLPP 298
++ + I L + ++ +++ + + + Q
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVY--SLLEKVKRITVENSK-VFLVPCSFSQHLK 334
Query: 299 SLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESL 358
SL+ L +S+ + ++ + S L+ L +S L + E+ TL++L
Sbjct: 335 SLEFLDLSEN-LMVEEYLKNSA-CKGAWPS--LQTLVLSQN-HLRSMQKTGEILLTLKNL 389
Query: 359 EVGNL--------------PPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKI 404
++ P ++ L + + + +LE + + NL
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT--CIPQTLEVLDVSNN-NLDS 445
Query: 405 LPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCK--RLEGGFHRYMIALH 462
L L++L I L + P+ L L + IS + + G
Sbjct: 446 FSLFLPRLQEL---YISRN-KLKTLPDASLF-PVLLVMKISRNQLKSVPDG------IFD 494
Query: 463 NLTNLHSLYIGGN 475
LT+L +++ N
Sbjct: 495 RLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 54/367 (14%), Positives = 125/367 (34%), Gaps = 53/367 (14%)
Query: 222 SLSLSSLREIEICKCSS--LVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279
SLS + +C S S P L + +K++ +S + + + ++L++
Sbjct: 1 SLSCDASG---VCDGRSRSFTSIPS-GLTAAMKSLDLSFNK-ITYIGHGDLRAC-ANLQV 54
Query: 280 LSIHGCRSLTYIA--AVQLPPSLKQLSISDCDNIRTLTVE--EGIQSSRRYTSCLLEHLD 335
L + R + I A SL+ L +SD ++ +L+ + S L++L+
Sbjct: 55 LILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSS--------LKYLN 104
Query: 336 ISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAER-LDNNTSLETI 394
+ N + NL +L++L + I TSL +
Sbjct: 105 LMG----------NPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153
Query: 395 SIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGG 453
I+ +L+ S L ++R + + + + + +R L++ D L
Sbjct: 154 EIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARF 211
Query: 454 FHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC-DDDMVSFPL 512
+ + + L G++ +S E + L + C + + F
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271
Query: 513 EDKRLGTALPL--PASLTTLWISR-------------FPNLERLSSSIVDLQNLTELVLV 557
+ + + L ++ L I + ++R++ + +
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331
Query: 558 NCPKLKY 564
+ L++
Sbjct: 332 HLKSLEF 338
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 34/229 (14%)
Query: 365 PSLKSLYVYGCSKLESIAER-LDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWN 422
L+ L + + I + SL T+ + L ++PSG L +L+ + + N
Sbjct: 99 HHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRN 156
Query: 423 CGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMI---ALHNLTNLHSLYIGGNMEI 478
+ S P L RLD+ + K+LE I A L NL L +G
Sbjct: 157 N-PIESIPSYAFNRVPSLMRLDLGELKKLE------YISEGAFEGLFNLKYLNLGMC--- 206
Query: 479 WKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL 538
I+ L L + G + R G+ L SL LW+ +
Sbjct: 207 ---NIKDMPNLTPLVGLEELEMSGN-------HFPEIRPGSFHGLS-SLKKLWVMN-SQV 254
Query: 539 ERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGLPS--SLLQLQIYCCPL 584
+ + L +L EL L + L P L++L ++ P
Sbjct: 255 SLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 34/229 (14%)
Query: 365 PSLKSLYVYGCSKLESIAER-LDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWN 422
L+ L + + +I + +L T+ + L +P+G L +L+ + + N
Sbjct: 88 RHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRN 145
Query: 423 CGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMI---ALHNLTNLHSLYIGGNMEI 478
+ S P LRRLD+ + KRL I A L+NL L +
Sbjct: 146 N-PIESIPSYAFNRIPSLRRLDLGELKRLS------YISEGAFEGLSNLRYLNLAMC--- 195
Query: 479 WKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL 538
+ L L + G L R G+ L L LW+ +
Sbjct: 196 ---NLREIPNLTPLIKLDELDLSGN-------HLSAIRPGSFQGLM-HLQKLWMI-QSQI 243
Query: 539 ERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGLPS--SLLQLQIYCCPL 584
+ + + +LQ+L E+ L + L P L ++ ++ P
Sbjct: 244 QVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 71/386 (18%), Positives = 131/386 (33%), Gaps = 82/386 (21%)
Query: 195 QQLCELSCRLEYLRLSNC----EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVAL-PS 249
+L L + + +RL +C + + +L E+ + L
Sbjct: 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE---------LGDV 71
Query: 250 KLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR----SLTYIA-AVQLPPSLKQLS 304
+ + L++ + ++ LS+ C ++ ++ P+L++L
Sbjct: 72 GVHCV----LQGLQT--------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 305 ISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLP 364
+SD + ++ + C LE L + C SL+ + L + L +
Sbjct: 120 LSDN-LLGDAGLQL-LCEGLLDPQCRLEKLQLEYC-SLSAASCEP-LASVLRAK------ 169
Query: 365 PSLKSLYVYGC----SKLESIAERL-DNNTSLETISIERCGNLKILPSGLHNLRQLQGIK 419
P K L V + + + + L D+ LE + +E CG + +L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG---VTSDNCRDL------- 219
Query: 420 IWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIAL-HNLTNLHSLYIGGNMEI 478
CG + S A LR L + K + G L H + L +L+I
Sbjct: 220 ---CGIVAS-------KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269
Query: 479 WKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLED---KRLGTALPLP-ASLTTLWISR 534
K + R SL+ L++ G L D + L L P L +LW+
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGN-------ELGDEGARLLCETLLEPGCQLESLWVKS 322
Query: 535 ----FPNLERLSSSIVDLQNLTELVL 556
SS + + L EL +
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQI 348
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 68/378 (17%), Positives = 121/378 (32%), Gaps = 89/378 (23%)
Query: 132 LAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEK 191
L L +LE+L+++ + +L+ K LT+ S +
Sbjct: 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV-SNNDINEAGVRVL- 190
Query: 192 DQQQQLCELSCRLEYLRLSNC----EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVAL 247
Q L + C+LE L+L +C + L S +SLRE+ +
Sbjct: 191 --CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN----------- 237
Query: 248 PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR----SLTYIA-AVQLPPSLKQ 302
KL + + L + +S L L I C + ++ SLK+
Sbjct: 238 --KLGD------VGMAELCPG-LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 303 LSISDCDNIRTLTVEEGIQS---SRRYTSCLLEHLDISSC-----------------PSL 342
LS++ + +EG + + C LE L + SC L
Sbjct: 289 LSLAGN-ELG----DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343
Query: 343 TCI-FSKNEL-----PATLESLEVGNLPPSLKSLYVYGCS----KLESIAERLDNNTSLE 392
+ S N L + L L+ L++ C S+A L N SL
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPG--SVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401
Query: 393 TISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452
+ + + +G+ L ++ ++ C L +L + D E
Sbjct: 402 ELDLSNN---CLGDAGILQL--VESVRQPGC--------------LLEQLVLYDIYWSEE 442
Query: 453 GFHRYMIALHNLTNLHSL 470
R + +L +
Sbjct: 443 MEDRLQALEKDKPSLRVI 460
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 61/315 (19%), Positives = 105/315 (33%), Gaps = 75/315 (23%)
Query: 195 QQLCELSCRLEYLRLSNC----EGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSK 250
Q L SC+++ L L NC G L + +L +L+E+ +
Sbjct: 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL------------- 124
Query: 251 LKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR----SLTYIA-AVQLPPSLKQLSI 305
+ L+ L E + D LE L + C S +A ++ P K+L++
Sbjct: 125 -----LGD-AGLQLLCEG-LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177
Query: 306 SDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSC-----------------PSLTCIF-S 347
S+ +I V + + + C LE L + SC SL +
Sbjct: 178 SNN-DINEAGVRV-LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 348 KNEL-PATLESLEVGNLPP--SLKSLYVYGCSK----LESIAERLDNNTSLETISIERCG 400
N+L + L G L P L++L+++ C + L SL+ +S+
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL---A 292
Query: 401 NLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIA 460
++ G L + + C +L L + C +
Sbjct: 293 GNELGDEGARLL--CETLLEPGC--------------QLESLWVKSCSFTAACCSHFSSV 336
Query: 461 LHNLTNLHSLYIGGN 475
L L L I N
Sbjct: 337 LAQNRFLLELQISNN 351
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 72/376 (19%), Positives = 134/376 (35%), Gaps = 64/376 (17%)
Query: 234 CKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA 293
C V+ PE +P++ + + + +K+L + + LE L ++ ++ +
Sbjct: 18 CHRKRFVAVPE-GIPTETRLLDLGKNR-IKTLNQDEF-ASFPHLEELELNENI-VSAVEP 73
Query: 294 VQLP--PSLKQLSISDCDNIRTLTVE--EGIQSSRRYTSCLLEHLDISSCPSLTCIFSK- 348
+L+ L + ++ + + G+ + L LDIS + +
Sbjct: 74 GAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSN--------LTKLDISEN-KIVILLDYM 123
Query: 349 -NELPATLESLEVGN-----LP-------PSLKSLYVYGCSKLESIAER-LDNNTSLETI 394
+L L+SLEVG+ + SL+ L + C L SI L + L +
Sbjct: 124 FQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVL 181
Query: 395 SIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCK--RLE 451
+ N+ + L +L+ ++I + L + L L L I+ C +
Sbjct: 182 RLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 452 GGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFP 511
A+ +L L L + N I S IE H L+ + + G
Sbjct: 241 YL------AVRHLVYLRFLNLSYN-PI--STIEGS-MLHELLRLQEIQLVGGQ------- 283
Query: 512 LEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVD-LQNLTELVLVNCP-----KLKYF 565
L L L L +S L L S+ + NL L+L + P +L +
Sbjct: 284 LAVVEPYAFRGLN-YLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341
Query: 566 PEKGLPSSLLQLQIYC 581
+ + + Q C
Sbjct: 342 FRRRWRLNFNRQQPTC 357
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 29/226 (12%), Positives = 69/226 (30%), Gaps = 59/226 (26%)
Query: 210 SNCEGL--VKLPQSSLSLSSLREIEIC--KCSSLVSFPEVALPSKLKNIWIST---CDAL 262
C L L ++ ++ ++ + + V LP LK I L
Sbjct: 177 YYCYNLKKADLSKTKIT-----KLPASTFVYAGIEE---VLLPVTLKEIGSQAFLKTSQL 228
Query: 263 KS--LPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSI---SDCDNIRTLTVE 317
K+ +P + S++ + +T + +LP + ++ C + +T
Sbjct: 229 KTIEIP-----ENVSTIGQEAFRES-GITTV---KLPNGVTNIASRAFYYCPELAEVTTY 279
Query: 318 EGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVY---G 374
+ + + CP L +P S++ L G
Sbjct: 280 GSTFNDDPEAM--IHPYCLEGCPKLARF----------------EIPESIRILGQGLLGG 321
Query: 375 CSKLESIA-----ERLDN----NTSLETISIERCGNLKILPSGLHN 411
K+ + +++ NT ++ + +E ++ +
Sbjct: 322 NRKVTQLTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYG 367
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 40/321 (12%), Positives = 98/321 (30%), Gaps = 56/321 (17%)
Query: 197 LCELSCRLEYLRLSNC----EGLVKLPQS-SLSLSSLREIEICKCS----SLVSFPEV-- 245
+ L LS + +L Q + +++ + + S +
Sbjct: 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLA 105
Query: 246 ALPSKLKNIWISTCD----ALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL----- 296
A+P + + + D + +A + +S+ L++ G L ++ +L
Sbjct: 106 AIPFTITVLDLGWNDFSSKSSSEFKQA-FSNLPASITSLNLRGND-LGIKSSDELIQILA 163
Query: 297 --PPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPAT 354
P ++ L++ N+ + E + + LD+S+
Sbjct: 164 AIPANVNSLNLRGN-NLASKNCAE-LAKFLASIPASVTSLDLSANL-----LGLKSYAEL 216
Query: 355 LESLEVGNLPPSLKSLYVYGCSK----LESIAERLDNNTSLETISIERCGN-------LK 403
++P + SL + LE++ D+ L+T+ ++ K
Sbjct: 217 AYIFS--SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274
Query: 404 ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGL--------PCAKLRRLDISDCKRLEGGFH 455
L + N++++ + G + P + K + + + H
Sbjct: 275 ALGAAFPNIQKIILVDKN--GKEIH-PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKH 331
Query: 456 RYMIA-LHNLTNLHSLYIGGN 475
+ I L+ L
Sbjct: 332 QTNIEDLNIPDELRESIQTCK 352
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 39/329 (11%), Positives = 100/329 (30%), Gaps = 76/329 (23%)
Query: 259 CDALKSLPEAWMCDTNSSLEILSIHGCR----SLTYIAAV--QLPPSLKQLSISDCDNIR 312
A + T +S+ L++ G + + + +P ++ L++S +
Sbjct: 43 IQAFAN--------TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLS 93
Query: 313 TLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYV 372
+ +E + + + LD+ FS ++ NLP S+ SL +
Sbjct: 94 YKSSDE-LVKTLAAIPFTITVLDLGWND-----FSSKSSSEFKQAFS--NLPASITSLNL 145
Query: 373 YGCS----KLESIAERL-DNNTSLETISIERCG-----------NLKILPSGLHNLRQLQ 416
G + + + L ++ ++++ L +P+ + +L L
Sbjct: 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD-LS 204
Query: 417 GIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475
+ + L++ + +L +L ++Y+ +
Sbjct: 205 ANLLGLKS-YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263
Query: 476 MEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRF 535
+++++ C LG A P + + +
Sbjct: 264 ------------------IVKNMSKEQCKA-----------LGAAFPNIQKIILVDKNGK 294
Query: 536 P----NLERLSSSIVDLQ-NLTELVLVNC 559
+ +S+ I +L L+N
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLNQ 323
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 56/251 (22%)
Query: 338 SCPSLTCIFSKNELPATLESLEVGNLP------------PSLKSLYVYGCSKLESIAERL 385
+C + I S LP + ++L++ P++ +YV L+ +
Sbjct: 19 TCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS 75
Query: 386 -DNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPEGGL--PCAKLRR 441
N + + I I NL + L L L+ + I+N G L FP+
Sbjct: 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFI 134
Query: 442 LDISDCKRLEGGFHRYMI---ALHNLTN-LHSLYIGGNMEIWKSMIERGRGFHRFSSLRH 497
L+I+D + I A L N +L + N + ++ F+ + L
Sbjct: 135 LEITDNPYMT------SIPVNAFQGLCNETLTLKLYNN-GF--TSVQGY-AFNG-TKLDA 183
Query: 498 LTIRGCDDDMVSFPLEDKRLGTALP------LPASLTTLWISRFPNLERLSSSIVDLQNL 551
+ + T + + + + L +S+ ++ L S L++L
Sbjct: 184 VYLNKNKYL------------TVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKG--LEHL 228
Query: 552 TELVLVNCPKL 562
EL+ N L
Sbjct: 229 KELIARNTWTL 239
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 57/243 (23%)
Query: 239 LVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPP 298
VS + L ++ + ++ + L SLP+ + + +L I L LP
Sbjct: 49 AVSLLKECLINQFSELQLNRLN-LSSLPD----NLPPQITVLEITQNA-LI-----SLPE 97
Query: 299 SLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESL 358
L D + R T+ E S L+HLD+ + LT LP
Sbjct: 98 LPASLEYLDACDNRLSTLPELPAS--------LKHLDVDNNQ-LT------MLPE----- 137
Query: 359 EVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGI 418
LP L+ + +L + E TSLE +S+ L LP +L L
Sbjct: 138 ----LPALLEYINADNN-QLTMLPELP---TSLEVLSVRNN-QLTFLPELPESLEAL--- 185
Query: 419 KIWNCGN--LVSFPEGGLPCAKLRR----LDISDCKRLEGGFHRYMIALHNLTNLHSLYI 472
+ L S P + + + + +L ++ +
Sbjct: 186 ---DVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-----ITHIPENILSLDPTCTIIL 237
Query: 473 GGN 475
N
Sbjct: 238 EDN 240
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 46/305 (15%), Positives = 103/305 (33%), Gaps = 54/305 (17%)
Query: 200 LSCRLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWI 256
L L L N + + ++ L +L + + + + A KL+ +++
Sbjct: 50 LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFAPLVKLERLYL 107
Query: 257 STCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTL 314
S + LK LPE +L+ L +H +T + + + + +++
Sbjct: 108 S-KNQLKELPE----KMPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTN-PLKSS 160
Query: 315 TVEEGI-QSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN-----LP---- 364
+E G Q ++ L ++ I+ ++T I LP +L L + +
Sbjct: 161 GIENGAFQGMKK-----LSYIRIADT-NITTI--PQGLPPSLTELHLDGNKITKVDAASL 212
Query: 365 ---PSLKSLYVYGCSKLESIAER-LDNNTSLETISIERCGNLKILPSGLHNLRQLQGI-- 418
+L L + + ++ L N L + + L +P GL + + +Q +
Sbjct: 213 KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYL 270
Query: 419 ---KIWNCGNLVSFPEGGLP-CAKLRRLDISD----CKRLEGGFHRYMIALHNLTNLHSL 470
I G+ P G A + + ++ + ++
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS------TFRCVYVRAAV 324
Query: 471 YIGGN 475
+G
Sbjct: 325 QLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 47/295 (15%), Positives = 96/295 (32%), Gaps = 55/295 (18%)
Query: 286 RSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI 345
L + LPP L + + I + + + L L + + ++ I
Sbjct: 41 LGLEKVPK-DLPPDTALLDLQNN-KITEIKDG----DFKNLKN--LHTLILINN-KISKI 91
Query: 346 FSK--NELPATLESLEVGN---------LPPSLKSLYVYGCSKLESIAER-LDNNTSLET 393
L LE L + +P +L+ L V+ ++ + + + +
Sbjct: 92 SPGAFAPLVK-LERLYLSKNQLKELPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIV 149
Query: 394 ISIE--RCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCK--R 449
+ + + I +++L I+I + N+ + P+G P L L + K +
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP--SLTELHLDGNKITK 206
Query: 450 LEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS 509
++ +L L NL L + N I S ++ G LR L + +V
Sbjct: 207 VDAA------SLKGLNNLAKLGLSFN-SI--SAVDNG-SLANTPHLRELHLNNN--KLVK 254
Query: 510 FPLEDKRLGTALPLPASLTTLW-----ISRFP-NLERLSSSIVDLQNLTELVLVN 558
P L + ++ IS N + + + L +
Sbjct: 255 VP-------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-05
Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 201 SCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCD 260
+++ + ++ + L + +I +CKC +
Sbjct: 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYI------------------EDG 101
Query: 261 ALKSLPEAWMCDTNSSLEILSIHGCRSLTY--IAAVQLPPSLKQLSISDCDNIR 312
L+ L + + + S+ + I C ++T I A+ +LK L +SD ++
Sbjct: 102 CLERL--SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 17/150 (11%), Positives = 50/150 (33%), Gaps = 32/150 (21%)
Query: 233 ICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIA 292
+ +C ++V + + W + L + P ++ + + I
Sbjct: 31 LLRCGAMVRY-------HGQQRWQKDYNHLPTGPL-----DKYKIQAIDATDS-CIMSIG 77
Query: 293 AVQLP--PSLKQLSISDCDNIRTLTVEEGIQ--SSRRYTSCLLEHLDISSCPSLTCIFSK 348
+ ++++ + C I + ++ S + ++I SC ++T
Sbjct: 78 FDHMEGLQYVEKIRLCKCHYIE----DGCLERLSQLENLQKSMLEMEIISCGNVT----- 128
Query: 349 NELPATLESLEVGNLPPSLKSLYVYGCSKL 378
+ +L + +LK L++ +
Sbjct: 129 ---DKGIIAL--HHF-RNLKYLFLSDLPGV 152
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 405 LPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNL 464
LP+G + ++Q I + + + + ++ + C +E G + L NL
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112
Query: 465 T-NLHSLYIGGNMEIWKSMIERG-RGFHRFSSLRHLTIRGC 503
++ + I + ++G H F +L++L +
Sbjct: 113 QKSMLEMEIISCGNV----TDKGIIALHHFRNLKYLFLSDL 149
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 55/393 (13%), Positives = 126/393 (32%), Gaps = 76/393 (19%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTC 259
+ + N + KLP + L + + + + A ++ +++
Sbjct: 52 NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 109
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTLTVE 317
A++ LP + L +L + L+ + P L LS+S+ N+ + +
Sbjct: 110 -AIRYLPPH-VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIE-D 164
Query: 318 EGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 377
+ Q++ L++L +SS L +++ +P SL V
Sbjct: 165 DTFQATTS-----LQNLQLSSNR--------------LTHVDLSLIP-SLFHANVSYN-L 203
Query: 378 LESIAERLDNNTSLETISIERCGNLKILPSG-LHNLRQL--QGIKIWNCGNLVSFPEGGL 434
L + L ++E + ++ ++ L L Q + + L+++P
Sbjct: 204 LST----LAIPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYP---- 254
Query: 435 PCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRF 492
L +D+S + ++ + L LYI N ++
Sbjct: 255 ---GLVEVDLSYNELEKIMYH------PFVKMQRLERLYISNN-----RLVALNLYGQPI 300
Query: 493 SSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN-LERLSSSIVDLQNL 551
+L+ L + ++ + L L++ N + L S L
Sbjct: 301 PTLKVLDLSHN--HLLHVERNQPQFD-------RLENLYLDH--NSIVTLKLST--HHTL 347
Query: 552 TELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
L L + + L ++ + +
Sbjct: 348 KNLTLSHND-WDCNSLRALFRNVARPAVDDADQ 379
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 9e-05
Identities = 41/298 (13%), Positives = 87/298 (29%), Gaps = 65/298 (21%)
Query: 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLP------------PSLKSLYVYGC 375
+ P CI S + + + + K +
Sbjct: 2 GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61
Query: 376 SKLESI-AERLDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPEG- 432
+ + A LD+ +E +++ ++ + + +Q + + + P
Sbjct: 62 -TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV 118
Query: 433 --GLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG 488
+P L L + L G HN L +L + N + IE
Sbjct: 119 FQNVP--LLTVLVLERNDLSSLPRG------IFHNTPKLTTLSMSNN-NL--ERIEDD-T 166
Query: 489 FHRFSSLRHLTIRGC---DDDMVSFP------LEDKRLGTALPLPASLTTLWISR----- 534
F +SL++L + D+ P + L + L +P ++ L S
Sbjct: 167 FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINV 225
Query: 535 -----FPNLERLS---------SSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQ 578
L L + +++ L E+ L +L+ + +L+
Sbjct: 226 VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLE 281
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 35/280 (12%), Positives = 105/280 (37%), Gaps = 50/280 (17%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTC 259
R + ++++ L + S +++E+++ L L +KL+ + +S+
Sbjct: 11 RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG 319
L + ++ S+L L ++ + + + PS++ L ++ NI ++ G
Sbjct: 69 -VLYETLDL---ESLSTLRTLDLNNNY----VQELLVGPSIETLHAANN-NISRVSCSRG 119
Query: 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379
+++ +++ N++ L L+ G ++ L + +++
Sbjct: 120 QG---------KKNIYLAN----------NKI-TMLRDLDEGCRS-RVQYLDLKLN-EID 157
Query: 380 SIAER--LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA 437
++ ++ +LE ++++ + + + +L+ + + + L A
Sbjct: 158 TVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAA 214
Query: 438 KLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGN 475
+ + + + K +E NL + GN
Sbjct: 215 GVTWISLRNNKLVLIEKALR-------FSQNLEHFDLRGN 247
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 38/314 (12%), Positives = 92/314 (29%), Gaps = 60/314 (19%)
Query: 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357
K ++D +++ + ++ LD+S N L + + +
Sbjct: 10 NRYKIEKVTDS-SLKQALASLRQSAWN------VKELDLSG----------NPL-SQISA 51
Query: 358 LEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQG 417
++ L+ L + L + L++ ++L T+ + ++ L ++ L
Sbjct: 52 ADLAPFT-KLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN-YVQELLV-GPSIETL-- 104
Query: 418 IKIWNCGN--LVSFPEGGLPCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIG 473
+ N + + + +++ K L + + L +
Sbjct: 105 ----HAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDL------DEGCRSRVQYLDLK 152
Query: 474 GNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWIS 533
N EI + +L HL ++ + + + L TL +S
Sbjct: 153 LN-EI--DTVNFAELAASSDTLEHLNLQYNF--IYDVKGQ-------VVFA-KLKTLDLS 199
Query: 534 RFPN-LERLSSSIVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCPLIAEKCRK 591
N L + +T + L N KL + +L + +
Sbjct: 200 S--NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHCGTLR 255
Query: 592 DGGQYWDLLTHIPH 605
D + +
Sbjct: 256 DFFSKNQRVQTVAK 269
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 54/393 (13%), Positives = 123/393 (31%), Gaps = 76/393 (19%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTC 259
+ + N + KLP + L + + + + A ++ +++
Sbjct: 46 NQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN 103
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRTLTVE 317
A++ LP + L +L + L+ + P L LS+S+ N+ + +
Sbjct: 104 -AIRYLPPHVFQNV-PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDD 159
Query: 318 EGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 377
++ L++L +SS L +++ +P SL V
Sbjct: 160 TFQATTS------LQNLQLSSNR--------------LTHVDLSLIP-SLFHANVSYN-L 197
Query: 378 LESIAERLDNNTSLETISIERCGNLKILPSG-LHNLRQL--QGIKIWNCGNLVSFPEGGL 434
L + L ++E + ++ ++ L L Q + + L+++P
Sbjct: 198 LST----LAIPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYP---- 248
Query: 435 PCAKLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRF 492
L +D+S + ++ + L LYI N ++
Sbjct: 249 ---GLVEVDLSYNELEKIMYH------PFVKMQRLERLYISNN-----RLVALNLYGQPI 294
Query: 493 SSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN-LERLSSSIVDLQNL 551
+L+ L + ++ L L++ N + L S L
Sbjct: 295 PTLKVLDLSHN--HLLHVERN------QPQFD-RLENLYLDH--NSIVTLKLST--HHTL 341
Query: 552 TELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPL 584
L L + + L ++ + +
Sbjct: 342 KNLTLSHND-WDCNSLRALFRNVARPAVDDADQ 373
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 33/245 (13%), Positives = 61/245 (24%), Gaps = 65/245 (26%)
Query: 210 SNCEGL--VKLPQSSLSLSSLREIEIC---KCSSLVSFPEVALPSKLKNIWIST--CDAL 262
+ L V L ++ IE C +L + K + D++
Sbjct: 98 KGKQTLEKVILS------EKIKNIEDAAFKGCDNLKI---CQIRKKTAPNLLPEALADSV 148
Query: 263 KS----LPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSIS---DCDNIRTLT 315
+ L + + E + L ++ +L R +
Sbjct: 149 TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT---IQVGAMGKLEDEIMKAGLQPRDIN 205
Query: 316 VEEGIQS------SRRYTSCL-LEHLDI-------------SSCPSLTCIFSKNELPATL 355
L LDI + L I +LP L
Sbjct: 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI----KLPHNL 261
Query: 356 ESLEVG------------NLPPSLKSLYVY---GCSKLESIAERLDNNTSLETISIERCG 400
+++ LP S+ ++ GC L + D T+L
Sbjct: 262 KTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321
Query: 401 NLKIL 405
K++
Sbjct: 322 PSKLI 326
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 53/369 (14%), Positives = 111/369 (30%), Gaps = 45/369 (12%)
Query: 170 SLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLR 229
L L + S K + L L +++ E L + L L
Sbjct: 147 KLTFLGL-SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205
Query: 230 EIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCR--- 286
++ L +L NI ++ + + + +L +++
Sbjct: 206 NSLFSVQVNMSVNALGHL--QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263
Query: 287 -SLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDI----SSCPS 341
+ P ++ L+I + + EE S S ++EH+ S +
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323
Query: 342 LTCIFSK-NELPATLESLE-----VGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETIS 395
L +F++ N ++ P S L +S+ + L+T+
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 396 IERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPC-----AKLRRLDISDCKRL 450
++R LK + + ++ + +L S + L++S
Sbjct: 384 LQRN-GLKNFFKVALMTKNMSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Query: 451 EGGFHRYMIALH-----------------NLTNLHSLYIGGNMEIWKSMIERGRGFHRFS 493
F + +L L L + N KS + G F R +
Sbjct: 442 GSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN--QLKS-VPDGV-FDRLT 497
Query: 494 SLRHLTIRG 502
SL+++ +
Sbjct: 498 SLQYIWLHD 506
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 54/323 (16%), Positives = 116/323 (35%), Gaps = 62/323 (19%)
Query: 200 LSCRLEYLRLSNCEGLVKLPQSSL-SLSSLREIEICKCSSLVSFPEVALPS--KLKNIWI 256
L+ ++ L LSN + + S L +L+ + + + + E + S L+++ +
Sbjct: 50 LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDL 107
Query: 257 STCDALKSLPEAWMCDTNSSLEILSIHGCR--SLTYIAAVQLPPSLKQLSISDCDNIRTL 314
S L +L +W SSL L++ G +L + L+ L + + D +
Sbjct: 108 SYNY-LSNLSSSWF-KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 315 TVE--EGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYV 372
+ G+ LE L+I + L P +L+S+ ++ L +
Sbjct: 166 QRKDFAGLTF--------LEELEIDASD-LQSYE-----PKSLKSI------QNVSHLIL 205
Query: 373 YGCSKLESIAERL-DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE 431
+ + + E D +S+E + L+ + +L + + +
Sbjct: 206 HMK-QHILLLEIFVDVTSSVECL------ELRDTDLDTFHFSELSTGETNSLIKKFT--- 255
Query: 432 GGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHR 491
R + I+D + M L+ ++ L L N + + G F R
Sbjct: 256 -------FRNVKITDES-----LFQVMKLLNQISGLLELEFSRNQ-L--KSVPDGI-FDR 299
Query: 492 FSSLRHLTIRG----CDDDMVSF 510
+SL+ + + C + +
Sbjct: 300 LTSLQKIWLHTNPWDCSCPRIDY 322
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 54/306 (17%), Positives = 106/306 (34%), Gaps = 55/306 (17%)
Query: 199 ELSCRLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIW 255
E+S L L N + + +L + L L + + + + E A KL+ ++
Sbjct: 51 EISPDTTLLDLQNND-ISELRKDDFKGLQHLYALVL-VNNKISKIHEKAFSPLRKLQKLY 108
Query: 256 ISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP--PSLKQLSISDCDNIRT 313
IS L +P + SSL L IH R + + ++ + + + +
Sbjct: 109 ISKNH-LVEIPP----NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGG-NPLEN 161
Query: 314 LTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGN-----LP---- 364
E G + L +L IS LT I +LP TL L + + +
Sbjct: 162 SGFEPGAFDGLK-----LNYLRISEA-KLTGI--PKDLPETLNELHLDHNKIQAIELEDL 213
Query: 365 ---PSLKSLYVYGCSKLESIAER-LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKI 420
L L + ++ I L +L + ++ L +P+GL +L+ LQ + +
Sbjct: 214 LRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYL 271
Query: 421 WNCGNLVSFPEG-------GLPCAKLRRLDISD----CKRLEGGFHRYMIALHNLTNLHS 469
N+ G+ A + + + ++ +T+ +
Sbjct: 272 HTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA------TFRCVTDRLA 324
Query: 470 LYIGGN 475
+ G
Sbjct: 325 IQFGNY 330
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 39/234 (16%), Positives = 69/234 (29%), Gaps = 50/234 (21%)
Query: 365 PSLKSLYVYGCS----KLESIAERLDNNTSLETISIERCG----------NLKILPSGLH 410
S+K + + G + ++E + + LE L++L L
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91
Query: 411 NLRQLQGIKIWNCGNLVSF-PEGGLPCAK-------LRRLDISDCKRLEGGFHRYMIALH 462
+L +++ + +F P P L L + + + AL
Sbjct: 92 KCPKLHTVRLSDN----AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147
Query: 463 NL---------TNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD--DDMVSFP 511
L L S+ G N SM E + F L + + + +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE-- 205
Query: 512 LEDKRLGTALPLPASLTTLWISRFPNL------ERLSSSIVDLQNLTELVLVNC 559
L L L L + N L+ ++ NL EL L +C
Sbjct: 206 ---HLLLEGLAYCQELKVLDLQD--NTFTHLGSSALAIALKSWPNLRELGLNDC 254
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 42/355 (11%), Positives = 124/355 (34%), Gaps = 50/355 (14%)
Query: 203 RLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPEVALP--SKLKNIWISTC 259
R + ++++ L + S +++E+++ L L +KL+ + +S+
Sbjct: 11 RYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN 68
Query: 260 DALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG 319
L + + S+L L ++ + + + PS++ L ++ NI ++ G
Sbjct: 69 -VLYETLDLE---SLSTLRTLDLNNNY----VQELLVGPSIETLHAANN-NISRVSCSRG 119
Query: 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379
+++ +++ N++ L L+ G ++ L + ++++
Sbjct: 120 QG---------KKNIYLAN----------NKI-TMLRDLDEGCRS-RVQYLDLKL-NEID 157
Query: 380 SIAER--LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA 437
++ ++ +LE ++++ + + + +L+ + + + L A
Sbjct: 158 TVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAA 214
Query: 438 KLRRLDISDCK--RLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495
+ + + + K +E NL + GN ++ + R ++
Sbjct: 215 GVTWISLRNNKLVLIEKALR-------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267
Query: 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQN 550
T++ L + R L+R +++ Q
Sbjct: 268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 28/171 (16%)
Query: 336 ISSCPSLTCI-FSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETI 394
+ K + L S + L +++ ++S+ + T+L+ +
Sbjct: 15 DPGLANAVKQNLGKQSV-TDLVSQK--ELS-GVQNFNGDNS-NIQSL-AGMQFFTNLKEL 68
Query: 395 SIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCK--RLEG 452
+ + S L +L +L+ + + N + G +P A L RL + + + +
Sbjct: 69 HLSHNQISDL--SPLKDLTKLEELSVNR--NRLKNLNG-IPSACLSRLFLDNNELRDTDS 123
Query: 453 GFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503
L +L NL L I N ++ S L L + G
Sbjct: 124 --------LIHLKNLEILSIRNN------KLKSIVMLGFLSKLEVLDLHGN 160
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 616 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.98 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.97 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.97 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.96 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.93 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.91 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.89 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.89 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.89 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.88 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.88 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.88 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.87 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.86 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.85 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.84 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.84 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.83 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.83 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.81 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.81 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.8 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.8 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.78 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.78 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.78 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.77 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.75 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.72 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.71 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.71 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.71 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.7 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.7 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.69 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.68 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.68 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.68 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.66 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.66 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.63 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.63 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.62 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.6 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.6 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.59 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.59 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.58 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.58 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.56 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.55 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.54 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.54 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.52 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.51 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.51 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.5 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.5 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.48 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.48 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.45 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.45 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.45 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.45 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.42 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.34 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.34 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.33 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.32 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.31 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.29 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.28 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.25 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.25 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.23 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.21 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.21 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.18 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.18 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.17 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.16 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.14 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.14 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.12 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.09 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.09 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.04 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.03 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.0 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.97 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.97 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.92 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.89 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.86 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.84 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.81 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.81 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.79 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.79 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.72 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.69 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.67 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.61 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.6 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.5 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.49 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.48 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.48 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.43 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.32 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.3 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.26 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.24 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.23 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.18 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.15 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.12 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.1 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.07 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.99 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.93 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.74 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.5 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.48 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.34 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.34 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.4 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 95.08 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 91.71 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 90.57 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 89.49 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 87.82 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=360.79 Aligned_cols=372 Identities=20% Similarity=0.146 Sum_probs=202.9
Q ss_pred CCCcEEEccCCCCCcccccc-cCCCCCccEEEEcCCCCCCCCCC-CCCCC-CCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQS-SLSLSSLREIEICKCSSLVSFPE-VALPS-KLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|++|++++|...+.+|.. ++.+++|++|++++|.....+|. +..++ +|++|++++|.....++..+....+++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 55555555555443344443 45555555555555532223332 12232 55555555554322333322112234555
Q ss_pred EEEeccCCCCccccc-cCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccc
Q 007138 279 ILSIHGCRSLTYIAA-VQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 357 (616)
+|++++|.....++. ...+++|+.|++++|.-...+ +..+.. +++|++|+++++. +. +.+|..+..
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~-----l~~L~~L~L~~n~-l~-----~~~p~~~~~ 464 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI--PSSLGS-----LSKLRDLKLWLNM-LE-----GEIPQELMY 464 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC--CGGGGG-----CTTCCEEECCSSC-CC-----SCCCGGGGG
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc--cHHHhc-----CCCCCEEECCCCc-cc-----CcCCHHHcC
Confidence 665555432212221 134455666666555221122 333333 5566666666532 22 122333333
Q ss_pred cccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCC
Q 007138 358 LEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA 437 (616)
Q Consensus 358 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 437 (616)
+ ++|++|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|.....++
T Consensus 465 l------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 465 V------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp C------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred C------CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 3 6677777777766666666666777777777777666556666677777777777777654445665555566
Q ss_pred CceEEEccCCcccccchhhhHh----------------------------------------------------------
Q 007138 438 KLRRLDISDCKRLEGGFHRYMI---------------------------------------------------------- 459 (616)
Q Consensus 438 ~L~~L~l~~c~~l~~~~~~~~~---------------------------------------------------------- 459 (616)
+|++|++++| .+++.+|..+.
T Consensus 539 ~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 539 SLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TCCEEECCSS-EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCEEECCCC-ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 7777777763 45544443221
Q ss_pred ---------hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccc-cccccccccCCCCCCCCccce
Q 007138 460 ---------ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMV-SFPLEDKRLGTALPLPASLTT 529 (616)
Q Consensus 460 ---------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~-~l~~~~~~~~~~~~~~~~L~~ 529 (616)
.++++++|+.|++++|... ...+..+..+++|+.|++++| .+. .+|...+ .+++|++
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N--~l~g~ip~~l~-------~L~~L~~ 684 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLS----GYIPKEIGSMPYLFILNLGHN--DISGSIPDEVG-------DLRGLNI 684 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCB----SCCCGGGGGCTTCCEEECCSS--CCCSCCCGGGG-------GCTTCCE
T ss_pred ceecccCchhhhccccccEEECcCCccc----ccCCHHHhccccCCEEeCcCC--ccCCCCChHHh-------CCCCCCE
Confidence 2334567777888777532 123445677788888888885 443 5666553 5788888
Q ss_pred EecccCccccccccccccCccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchh----hhhhhcCCCCcccccCCccE
Q 007138 530 LWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLI----AEKCRKDGGQYWDLLTHIPH 605 (616)
Q Consensus 530 L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l----~~~~~~~~~~~w~~i~~i~~ 605 (616)
|++++|.-...+|..+..++.|++|++++|+--..+|..+.+..+....+.|+|.+ -..|....+++|++++|+++
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~ 764 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHH 764 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------------
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccc
Confidence 88888665557787888888888888888544455776655666666666666533 12688889999999999998
Q ss_pred E
Q 007138 606 V 606 (616)
Q Consensus 606 ~ 606 (616)
+
T Consensus 765 ~ 765 (768)
T 3rgz_A 765 H 765 (768)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=334.00 Aligned_cols=438 Identities=17% Similarity=0.126 Sum_probs=213.0
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC----CCCCCccEEeecCCcch---hhh
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP----EHLPALEMLVIEGCEEL---LVS 88 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~~~~L~~L~l~~c~~l---~~~ 88 (616)
++..+++|++|++.++. +.+..+. . ..++.+++|++|++++|. +.+..| ..+++|++|++++|..- +..
T Consensus 95 ~~~~l~~L~~L~Ls~n~-l~~~~~~-~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNS-LSGPVTT-L-TSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCTTCCEEECCSSE-EEEEGGG-G-GGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred hhccCCCCCEEECCCCc-CCCcCCC-h-HHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 35566777777777763 3332221 0 123667777777777764 333444 24567777777777621 122
Q ss_pred ---hcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCC--CCCCCCcEEEecCCCCcccccccchh
Q 007138 89 ---VASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLK--PRIPKLEELEIKNIENETYVWKSHNE 163 (616)
Q Consensus 89 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~ 163 (616)
+..+++|++|++++|........ .....+...+..++. +.+.+| ..+++|+.|.+.++.... ..+.
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~ 241 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISGNKLSG----DFSR 241 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSC-CCSCCCBCTTCCSCCEEECCSSCCCS----CHHH
T ss_pred hhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCc-CCCCCcccccCCCCCEEECcCCcCCC----cccH
Confidence 56677777777777765542221 222233333222221 112222 223344444443332211 2334
Q ss_pred HHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCC-CCccEEEEcCCCCCCCC
Q 007138 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSL-SSLREIEICKCSSLVSF 242 (616)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~ 242 (616)
.+..+++|++|++++|.....++.. .+ ++|++|++++|...+.+|..+... ++|++|++++|.....+
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~-------~l----~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL-------PL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC-------CC----TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred HHhcCCCCCEEECCCCcccCccCcc-------cc----CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 4556666666666665422221110 12 556666666665544556555443 66666666666432233
Q ss_pred C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-C-CCCCccEEEEecCCCCCccccccc
Q 007138 243 P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-Q-LPPSLKQLSISDCDNIRTLTVEEG 319 (616)
Q Consensus 243 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~L~~L~l~~~~~l~~l~~~~~ 319 (616)
| .+..+++|++|++++|.....++.... ..+++|++|+++++.....++.. . ..++|+.|+++++.-...+ +..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~--~~~ 387 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--LPN 387 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC--CTT
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc--Chh
Confidence 3 234466666666666653334443311 44566666666655321122221 1 1226666666665311111 111
Q ss_pred ccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccc
Q 007138 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERC 399 (616)
Q Consensus 320 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 399 (616)
+.. ..+++|++|++++|. ++. .+|..+..+ ++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus 388 ~~~---~~~~~L~~L~L~~n~-l~~-----~~p~~l~~l------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 388 LCQ---NPKNTLQELYLQNNG-FTG-----KIPPTLSNC------SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp TTC---STTCCCCEEECCSSE-EEE-----ECCGGGGGC------TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred hhh---cccCCccEEECCCCc-ccc-----ccCHHHhcC------CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 100 013456666665532 221 122233333 55666666665555455555555556666666665
Q ss_pred cccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHH
Q 007138 400 GNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIW 479 (616)
Q Consensus 400 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 479 (616)
...+.+|..+..+++|+.|++++|.....+|.....+++|++|++++ +.+++.+|. .++++++|+.|++++|...
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~---~~~~l~~L~~L~L~~N~l~- 527 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN-NRLTGEIPK---WIGRLENLAILKLSNNSFS- 527 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCCSCCCG---GGGGCTTCCEEECCSSCCE-
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC-CccCCcCCh---HHhcCCCCCEEECCCCccc-
Confidence 55445555555556666666665543334444444445566666655 345544443 3445555556666555421
Q ss_pred HHhhhcCccccccCCccEEEEecC
Q 007138 480 KSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 480 ~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
...+..+..+++|+.|++++|
T Consensus 528 ---~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 528 ---GNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp ---EECCGGGGGCTTCCEEECCSS
T ss_pred ---CcCCHHHcCCCCCCEEECCCC
Confidence 112234455555666665553
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=294.60 Aligned_cols=481 Identities=17% Similarity=0.127 Sum_probs=339.7
Q ss_pred CCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--ch-hhhhcCCC
Q 007138 20 FPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--EL-LVSVASLP 93 (616)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l-~~~~~~~~ 93 (616)
.+++++|++.++ .+.+..+... +.+++|++|++++|. +++..|. .+++|++|++++|. .+ +..+..++
T Consensus 31 ~~~l~~L~Ls~n-~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 31 PSSTKNIDLSFN-PLKILKSYSF----SNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp CTTCCEEECTTS-CCCEECTTTT----TTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCcCEEECCCC-CcCEeChhhc----cCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 377999999997 4566554333 789999999999985 5544453 46889999999997 22 46788999
Q ss_pred CccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccE
Q 007138 94 ALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKR 173 (616)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 173 (616)
+|++|++++|.....+... -..+++|+.|.+.+...... ..+..++.+++|++
T Consensus 105 ~L~~L~L~~n~l~~~~~~~------------------------~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFP------------------------IGQLITLKKLNVAHNFIHSC---KLPAYFSNLTNLVH 157 (606)
T ss_dssp TCCEEECTTSCCCCSSSSC------------------------CTTCTTCCEEECCSSCCCCC---CCCGGGGTCTTCCE
T ss_pred cCCEEEccCCccccccccc------------------------cCCCCCCCEEeCCCCcccce---echHhHhhcCCCCE
Confidence 9999999999876543210 14567777777776654322 23556789999999
Q ss_pred EeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCC-CC-CCCCCCCC
Q 007138 174 LTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVS-FP-EVALPSKL 251 (616)
Q Consensus 174 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~-~~~~~~~L 251 (616)
|+++++. ++.++.. .+..+..+...+++|++++|.. +.++.......+|++|++++|..... ++ .+..+++|
T Consensus 158 L~Ls~n~-l~~~~~~----~~~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 231 (606)
T 3vq2_A 158 VDLSYNY-IQTITVN----DLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231 (606)
T ss_dssp EECCSSC-CCEECTT----TTHHHHHCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTC
T ss_pred EEccCCc-ceecChh----hhhhhhccccccceeeccCCCc-ceeCcccccCceeeeeeccCCccchhHHHHHhcccccc
Confidence 9999975 5555443 2444433333467899999876 56665555555899999998843211 11 11223334
Q ss_pred cE--------------------------------EEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCC
Q 007138 252 KN--------------------------------IWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPS 299 (616)
Q Consensus 252 ~~--------------------------------L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 299 (616)
+. +++..+..+......+ ..+++|+.++++++. +..++....+++
T Consensus 232 ~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~ 308 (606)
T 3vq2_A 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFK 308 (606)
T ss_dssp EEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCC
T ss_pred ccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhhhcccccc
Confidence 43 3332222222221111 455889999998865 566765667789
Q ss_pred ccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch
Q 007138 300 LKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379 (616)
Q Consensus 300 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 379 (616)
|+.|++++|. ++.+ +. + . +++|++|+++++..+.. .+... + ++|++|++++|....
T Consensus 309 L~~L~l~~n~-l~~l--p~-~-~-----l~~L~~L~l~~n~~~~~-~~~~~-------l------~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 309 WQSLSIIRCQ-LKQF--PT-L-D-----LPFLKSLTLTMNKGSIS-FKKVA-------L------PSLSYLDLSRNALSF 364 (606)
T ss_dssp CSEEEEESCC-CSSC--CC-C-C-----CSSCCEEEEESCSSCEE-CCCCC-------C------TTCCEEECCSSCEEE
T ss_pred CCEEEccccc-Cccc--cc-C-C-----CCccceeeccCCcCccc-hhhcc-------C------CCCCEEECcCCccCC
Confidence 9999999995 4666 42 2 3 78999999999755554 22222 2 899999999986554
Q ss_pred h--hhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC-CCCCCCCCceEEEccCCcccccchhh
Q 007138 380 S--IAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP-EGGLPCAKLRRLDISDCKRLEGGFHR 456 (616)
Q Consensus 380 ~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~ 456 (616)
. ++..+..+++|+.|++++|. +..+|..+..+++|+.|++++|......+ .....+++|++|++++| .+++..|.
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 442 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDG 442 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS-CCEECCTT
T ss_pred CcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC-CCCccchh
Confidence 3 36677889999999999987 66677888999999999999985433333 34456779999999995 57666654
Q ss_pred hHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCc
Q 007138 457 YMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFP 536 (616)
Q Consensus 457 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 536 (616)
.+.++++|+.|++++|.... ...+..+..+++|++|++++| .+..++... +..+++|++|++++|+
T Consensus 443 ---~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 443 ---IFLGLTSLNTLKMAGNSFKD---NTLSNVFANTTNLTFLDLSKC--QLEQISWGV------FDTLHRLQLLNMSHNN 508 (606)
T ss_dssp ---TTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCSSC
T ss_pred ---hhcCCCCCCEEECCCCcCCC---cchHHhhccCCCCCEEECCCC--cCCccChhh------hcccccCCEEECCCCc
Confidence 57889999999999986331 123556788999999999997 555554321 2368999999999965
Q ss_pred ccccc-ccccccCccccEEEecCCCCCcccCCCC-Cc-CCcceEEEcCCch
Q 007138 537 NLERL-SSSIVDLQNLTELVLVNCPKLKYFPEKG-LP-SSLLQLQIYCCPL 584 (616)
Q Consensus 537 ~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~-~~L~~L~i~~c~~ 584 (616)
+..+ |..+..+++|++|++++ ++++.+|... .+ ++|++++++++|.
T Consensus 509 -l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 509 -LLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp -CSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred -CCCcCHHHccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCCc
Confidence 5554 66889999999999999 6788998852 23 4699999999763
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=292.94 Aligned_cols=523 Identities=16% Similarity=0.149 Sum_probs=312.4
Q ss_pred CCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--chhh-hhcCCCC
Q 007138 21 PCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--ELLV-SVASLPA 94 (616)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l~~-~~~~~~~ 94 (616)
+++++|++.++ .+.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|. .++. .+..+++
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANF----TRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGG----GGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCC-CCCCcCHHHH----hCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 57888888886 3555443222 668888888888874 5434443 46788888888875 3333 4778888
Q ss_pred ccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCC---CCCCCcEEEecCCCCcccccccchhHHh--cCC
Q 007138 95 LCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKP---RIPKLEELEIKNIENETYVWKSHNELLQ--DIC 169 (616)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~ 169 (616)
|++|++++|.....+ +..++....+...+..++.. .+..+. .+++|+.|.+.+..... ..+..+. .++
T Consensus 99 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~~ 171 (680)
T 1ziw_A 99 LTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQA----LKSEELDIFANS 171 (680)
T ss_dssp CSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCC----BCHHHHGGGTTC
T ss_pred CCEEECCCCccCccC--hhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccc----cCHHHhhccccc
Confidence 888888888765432 12344555555555444422 233333 45566666665543322 2333332 457
Q ss_pred CccEEeeccCCCccccchhhhhhHHhhhh--------------------hccCCCcEEEccCCCCCcccccccCCCCC--
Q 007138 170 SLKRLTITSCPKLQSLVAEEEKDQQQQLC--------------------ELSCRLEYLRLSNCEGLVKLPQSSLSLSS-- 227 (616)
Q Consensus 170 ~L~~L~l~~~~~l~~l~~~~~~~~l~~l~--------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-- 227 (616)
+|++|+++++. ++.+++..+. .+..+. ...++|+.|++++|...+..|..+..++.
T Consensus 172 ~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 172 SLKKLELSSNQ-IKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp EESEEECTTCC-CCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccEEECCCCc-ccccChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 88888888764 4433332110 000000 01156788888877765555666666644
Q ss_pred ccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCc-----ccc-----ccC
Q 007138 228 LREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLT-----YIA-----AVQ 295 (616)
Q Consensus 228 L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~-----~~~ 295 (616)
|++|++++|. ++.++ .+..+++|++|++++|......+..+ ..+++|+.|+++++..-. .++ ...
T Consensus 250 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 250 LTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp CCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 8888888874 44443 34557888888888776333233222 455777777776542111 111 113
Q ss_pred CCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCC-cccccccCCCc----cccccccc----------
Q 007138 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPS-LTCIFSKNELP----ATLESLEV---------- 360 (616)
Q Consensus 296 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~----~~l~~l~~---------- 360 (616)
.+++|+.|+++++ .+..+. +..+.. +++|++|+++++.. +.. .+...+. ..++.+.+
T Consensus 327 ~l~~L~~L~l~~n-~l~~~~-~~~~~~-----l~~L~~L~Ls~n~~~~~~-l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 327 WLKCLEHLNMEDN-DIPGIK-SNMFTG-----LINLKYLSLSNSFTSLRT-LTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp TCTTCCEEECCSC-CBCCCC-TTTTTT-----CTTCCEEECTTCBSCCCE-ECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred cCCCCCEEECCCC-ccCCCC-hhHhcc-----ccCCcEEECCCCchhhhh-cchhhhcccccCcCceEECCCCCCCeECh
Confidence 4567777777776 333320 222222 56677777766431 111 1111110 01111111
Q ss_pred ---CCCCCcccEEEecCCCCchhhh-hhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCC--CcccCCCCC
Q 007138 361 ---GNLPPSLKSLYVYGCSKLESIA-ERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN--LVSFPEGGL 434 (616)
Q Consensus 361 ---~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~ 434 (616)
..+ ++|+.|++++|...+.++ ..+..+++|+.|++++|......+..+..+++|+.|++++|.. +..+|....
T Consensus 399 ~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 399 DAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 111 677777777776655454 4566677777777777765444455667777888888877642 234555556
Q ss_pred CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhh----cCccccccCCccEEEEecCCCccccc
Q 007138 435 PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIE----RGRGFHRFSSLRHLTIRGCDDDMVSF 510 (616)
Q Consensus 435 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~~L~i~~~~~~l~~l 510 (616)
.+++|++|++++ +.++++.+. .+..+++|+.|++++|......... ....+..+++|+.|++++| .++.+
T Consensus 478 ~l~~L~~L~Ls~-N~l~~i~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i 551 (680)
T 1ziw_A 478 PLRNLTILDLSN-NNIANINDD---MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEI 551 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTT---TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCC
T ss_pred cCCCCCEEECCC-CCCCcCChh---hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCC
Confidence 677888888888 467766554 5677888888888888633211000 1123677888999999886 66666
Q ss_pred cccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCC---CcCCcceEEEcCCch
Q 007138 511 PLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKG---LPSSLLQLQIYCCPL 584 (616)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~ 584 (616)
+... +..+++|++|++++ +.++.+|. .+..+++|++|++++ ++++.++... .+++|++++++++|.
T Consensus 552 ~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 552 PVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccCCCc
Confidence 6532 33678899999988 56788876 457888999999998 6888877642 357889999988763
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=291.35 Aligned_cols=484 Identities=15% Similarity=0.108 Sum_probs=332.8
Q ss_pred CCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc---hhhhhcCCCC
Q 007138 21 PCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE---LLVSVASLPA 94 (616)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~---l~~~~~~~~~ 94 (616)
+++++|++.++ .+.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|.. .+..+..+++
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~~~----~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNTTF----SRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTTC-CCSEECTTTS----TTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEccCC-ccCcCChhHh----ccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 46999999987 4666654333 789999999999985 5544453 468899999999963 2457889999
Q ss_pred ccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEE
Q 007138 95 LCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRL 174 (616)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 174 (616)
|++|++++|......... ...+++|+.|.+.+...... ..+. +..+++|++|
T Consensus 107 L~~L~L~~n~i~~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L 158 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIP------------------------LHNQKTLESLYLGSNHISSI---KLPK-GFPTEKLKVL 158 (606)
T ss_dssp CCEEECTTSCCSCGGGSC------------------------CTTCTTCCEEECCSSCCCCC---CCCT-TCCCTTCCEE
T ss_pred ccEeeccccCcccCCcch------------------------hccCCcccEEECCCCccccc---Cccc-ccCCcccCEE
Confidence 999999999876642211 14566777777766544332 1222 2348888888
Q ss_pred eeccCCCccccchhhhhhHHhhhhhccCCCc--EEEccCCCCCcccccccCCCCCccEEEEcCCCCCC------------
Q 007138 175 TITSCPKLQSLVAEEEKDQQQQLCELSCRLE--YLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLV------------ 240 (616)
Q Consensus 175 ~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~--~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~------------ 240 (616)
+++++. ++.+++. .+..+ ++|+ .|++++|... .++.......+|++|++++|..+.
T Consensus 159 ~L~~n~-l~~~~~~----~~~~l----~~L~~l~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 159 DFQNNA-IHYLSKE----DMSSL----QQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228 (606)
T ss_dssp ECCSSC-CCEECHH----HHHTT----TTCCSEEEECTTCCCC-EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEE
T ss_pred EcccCc-ccccChh----hhhhh----cccceeEEecCCCccC-ccChhHhhhccccccccCCchhHHHHhhhccccchh
Confidence 888865 5544332 35555 7777 7888887764 343334445678888887764210
Q ss_pred -------------CCCC--CCC--CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccE
Q 007138 241 -------------SFPE--VAL--PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQ 302 (616)
Q Consensus 241 -------------~~~~--~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~ 302 (616)
.++. ... ..+|+.+++++|. +..++.... ..+++|++|+++++. ++.++.. ..+++|+.
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~ 305 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTF-HCFSGLQELDLTATH-LSELPSGLVGLSTLKK 305 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTT-TTCTTCSEEECTTSC-CSCCCSSCCSCTTCCE
T ss_pred heechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHh-ccccCCCEEeccCCc-cCCCChhhcccccCCE
Confidence 0110 000 1278889998886 555554321 556889999999874 6666543 56689999
Q ss_pred EEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhh-
Q 007138 303 LSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESI- 381 (616)
Q Consensus 303 L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~- 381 (616)
|+++++. ++.+. +..+.. +++|++|+++++..... .+.. .+..+ ++|++|++++|......
T Consensus 306 L~l~~n~-l~~~~-~~~~~~-----l~~L~~L~l~~n~~~~~-~~~~----~~~~l------~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 306 LVLSANK-FENLC-QISASN-----FPSLTHLSIKGNTKRLE-LGTG----CLENL------ENLRELDLSHDDIETSDC 367 (606)
T ss_dssp EECTTCC-CSBGG-GGCGGG-----CTTCSEEECCSCSSCCB-CCSS----TTTTC------TTCCEEECCSSCCCEEEE
T ss_pred EECccCC-cCcCc-hhhhhc-----cCcCCEEECCCCCcccc-cchh----hhhcc------CcCCEEECCCCccccccC
Confidence 9999884 44431 233333 78899999998643222 2211 12233 88999999998766544
Q ss_pred -hhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhhHh
Q 007138 382 -AERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRYMI 459 (616)
Q Consensus 382 -~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~ 459 (616)
+..+..+++|+.|++++|......+..+..+++|++|++++|......+.. ...+++|++|++++| .+++..|.
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--- 443 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQ--- 443 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTT---
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHH---
Confidence 566888999999999998866666778889999999999998543333333 445679999999995 56666554
Q ss_pred hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 460 ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 460 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
.+..+++|+.|++++|..... .......+..+++|+.|++++| .+..++... +..+++|++|++++|.-..
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFC--DLSSIDQHA------FTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGG-EECSSCGGGGCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCSSCCCG
T ss_pred HHhCCCCCCEEECCCCCCCcc-ccccchhhccCCCccEEECCCC--ccCccChhh------hccccCCCEEECCCCccCc
Confidence 567889999999999863210 0112245788999999999997 555553321 3468999999999965444
Q ss_pred ccccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCch
Q 007138 540 RLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCPL 584 (616)
Q Consensus 540 ~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 584 (616)
..|..+..++.| .|++++ +.+..+++..+ +++|+++++++||.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp GGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CChhHhCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCCCc
Confidence 556688899999 999999 67887776533 68999999999873
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=285.05 Aligned_cols=464 Identities=15% Similarity=0.099 Sum_probs=327.8
Q ss_pred CCCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--h-hhh
Q 007138 15 DSPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--L-LVS 88 (616)
Q Consensus 15 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l-~~~ 88 (616)
.++..+++|++|++.++ .+.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|.. + +..
T Consensus 51 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRC-QIYWIHEDTF----QSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp TTSTTCTTCSEEECTTC-CCCEECTTTT----TTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred hHhccCccceEEECCCC-ccceeChhhc----cCccccCeeeCCCCc-ccccChhhhcccccccEeeccccCcccCCcch
Confidence 34778999999999998 4555554333 789999999999996 5545553 468999999999973 2 356
Q ss_pred hcCCCCccEEEeCCCcceee--cccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHh
Q 007138 89 VASLPALCKFEIGGCKKVVW--RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQ 166 (616)
Q Consensus 89 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 166 (616)
+..+++|++|++++|..... +.. ..+++|+.|.+.+..... ..+..+.
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~--------------------------~~l~~L~~L~L~~n~l~~----~~~~~~~ 174 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKG--------------------------FPTEKLKVLDFQNNAIHY----LSKEDMS 174 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTT--------------------------CCCTTCCEEECCSSCCCE----ECHHHHH
T ss_pred hccCCcccEEECCCCcccccCcccc--------------------------cCCcccCEEEcccCcccc----cChhhhh
Confidence 78899999999999987653 221 236788888887764432 4566788
Q ss_pred cCCCcc--EEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccc-------------------------
Q 007138 167 DICSLK--RLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP------------------------- 219 (616)
Q Consensus 167 ~l~~L~--~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~------------------------- 219 (616)
.+++|+ +|+++++. ++.+++.. +. . .+|+.|++++|..+...+
T Consensus 175 ~l~~L~~l~L~l~~n~-l~~~~~~~----~~-~----~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 175 SLQQATNLSLNLNGND-IAGIEPGA----FD-S----AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp TTTTCCSEEEECTTCC-CCEECTTT----TT-T----CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred hhcccceeEEecCCCc-cCccChhH----hh-h----ccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 899999 88888875 45444431 11 1 467788877765221111
Q ss_pred -cccCCCC--CccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccc-
Q 007138 220 -QSSLSLS--SLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA- 293 (616)
Q Consensus 220 -~~~~~l~--~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~- 293 (616)
..+..+. +|+.|++++| .++.++. +..+++|++|++++|. +..+|..+ ..+++|++|+++++. +..+..
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l--~~l~~L~~L~l~~n~-l~~~~~~ 319 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATH-LSELPSGL--VGLSTLKKLVLSANK-FENLCQI 319 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSC--CSCTTCCEEECTTCC-CSBGGGG
T ss_pred hhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCc-cCCCChhh--cccccCCEEECccCC-cCcCchh
Confidence 1111111 7889999988 4666663 5568999999999986 66777654 567899999999875 444432
Q ss_pred -cCCCCCccEEEEecCCCCCccccccc-ccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEE
Q 007138 294 -VQLPPSLKQLSISDCDNIRTLTVEEG-IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLY 371 (616)
Q Consensus 294 -~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 371 (616)
...+++|+.|+++++.....+ +.. +.. +++|++|+++++. ++.+.. .+..+..+ ++|++|+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~-----l~~L~~L~l~~n~-l~~~~~---~~~~~~~l------~~L~~L~ 382 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLEL--GTGCLEN-----LENLRELDLSHDD-IETSDC---CNLQLRNL------SHLQSLN 382 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBC--CSSTTTT-----CTTCCEEECCSSC-CCEEEE---STTTTTTC------TTCCEEE
T ss_pred hhhccCcCCEEECCCCCccccc--chhhhhc-----cCcCCEEECCCCc-cccccC---cchhcccC------CCCCEEE
Confidence 256689999999998544333 222 333 7899999999843 333110 12223333 8999999
Q ss_pred ecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccc
Q 007138 372 VYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRL 450 (616)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 450 (616)
+++|...+..+..+..+++|+.|++++|......+. .+..+++|+.|++++|......+.....+++|++|++++| .+
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 461 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HF 461 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BC
T ss_pred CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CC
Confidence 999987776777888899999999999876555443 4789999999999998544444555556779999999995 45
Q ss_pred ccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceE
Q 007138 451 EGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTL 530 (616)
Q Consensus 451 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L 530 (616)
++........+..+++|+.|++++|... ...+..+..+++|++|++++| .+..+.... +..+++| .|
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------l~~l~~L-~L 528 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS----SIDQHAFTSLKMMNHVDLSHN--RLTSSSIEA------LSHLKGI-YL 528 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSS--CCCGGGGGG------GTTCCSC-EE
T ss_pred CccccccchhhccCCCccEEECCCCccC----ccChhhhccccCCCEEECCCC--ccCcCChhH------hCccccc-EE
Confidence 5422212236788999999999998633 123456788999999999997 555444322 2368889 99
Q ss_pred ecccCcccccccc-ccccCccccEEEecCCCC
Q 007138 531 WISRFPNLERLSS-SIVDLQNLTELVLVNCPK 561 (616)
Q Consensus 531 ~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~ 561 (616)
++++| .+..+++ .+..+++|+++++++|+-
T Consensus 529 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 529 NLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp ECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 99995 4666554 678899999999999653
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-31 Score=287.93 Aligned_cols=462 Identities=16% Similarity=0.089 Sum_probs=314.2
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--hh-hhh
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--LL-VSV 89 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l~-~~~ 89 (616)
++..+++|++|++.++ .+.+..+... +.+++|++|++++|. +++..|. .+++|++|++++|.. +. ..+
T Consensus 51 ~~~~l~~L~~L~Ls~n-~l~~i~~~~~----~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRC-EIETIEDKAW----HGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124 (606)
T ss_dssp TTTTCTTCCEEECTTC-CCCEECTTTT----TTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred hccCCccCcEEeCCCC-cccccCHHHh----hchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCcccccccccc
Confidence 4778999999999997 5666654333 779999999999996 5544454 478899999999973 22 568
Q ss_pred cCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCC
Q 007138 90 ASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDIC 169 (616)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 169 (616)
..+++|++|++++|...... .+..+ ..+++|+.|.+.+..... ..+..++.++
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~-lp~~~----------------------~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~ 177 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCK-LPAYF----------------------SNLTNLVHVDLSYNYIQT----ITVNDLQFLR 177 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCC-CCGGG----------------------GTCTTCCEEECCSSCCCE----ECTTTTHHHH
T ss_pred CCCCCCCEEeCCCCccccee-chHhH----------------------hhcCCCCEEEccCCccee----cChhhhhhhh
Confidence 89999999999999865411 11111 345566666665543322 2223233333
Q ss_pred C----ccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCc-ccccccCCCCCccEEEE-----------
Q 007138 170 S----LKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLV-KLPQSSLSLSSLREIEI----------- 233 (616)
Q Consensus 170 ~----L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l----------- 233 (616)
+ +++|+++++. ++.++... + .. .+|++|++++|.... ..|..++.+++|+.+.+
T Consensus 178 ~L~~~l~~L~l~~n~-l~~~~~~~----~-~~----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNP-IDFIQDQA----F-QG----IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp HCTTCCCEEECTTCC-CCEECTTT----T-TT----CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccceeeccCCC-cceeCccc----c-cC----ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 3 3467777654 44444331 1 11 356777777765431 33444455555544443
Q ss_pred ----------------------cCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccc
Q 007138 234 ----------------------CKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI 291 (616)
Q Consensus 234 ----------------------~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 291 (616)
..+.....++....+++|+.|+++++. +..++.. ..+++|++|++++|.. ..+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~l---~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDV---PKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCCCC---CTTCCCSEEEEESCCC-SSC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhhhc---cccccCCEEEcccccC-ccc
Confidence 222222334455568899999998887 5666622 5668899999998764 777
Q ss_pred cccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEE
Q 007138 292 AAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLY 371 (616)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 371 (616)
+.. .+++|+.|+++++..+..+ .+. .+++|++|+++++ .++.+. ..+..+..+ ++|++|+
T Consensus 323 p~~-~l~~L~~L~l~~n~~~~~~----~~~-----~l~~L~~L~ls~n-~l~~~~---~~~~~~~~~------~~L~~L~ 382 (606)
T 3vq2_A 323 PTL-DLPFLKSLTLTMNKGSISF----KKV-----ALPSLSYLDLSRN-ALSFSG---CCSYSDLGT------NSLRHLD 382 (606)
T ss_dssp CCC-CCSSCCEEEEESCSSCEEC----CCC-----CCTTCCEEECCSS-CEEEEE---ECCHHHHCC------SCCCEEE
T ss_pred ccC-CCCccceeeccCCcCccch----hhc-----cCCCCCEEECcCC-ccCCCc---chhhhhccC------CcccEeE
Confidence 765 7789999999998655433 112 3788999999984 333210 112333333 8899999
Q ss_pred ecCCCCchhhhhhccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccc
Q 007138 372 VYGCSKLESIAERLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRL 450 (616)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 450 (616)
+++|. +..+|..+..+++|+.|++++|...+..+ ..+..+++|++|++++|......|.....+++|++|++++| .+
T Consensus 383 L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l 460 (606)
T 3vq2_A 383 LSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SF 460 (606)
T ss_dssp CCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EE
T ss_pred CCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cC
Confidence 99886 44466778888999999999987665555 46788999999999998655555665666779999999985 56
Q ss_pred cc-chhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccc-cccccccCCCCCCCCccc
Q 007138 451 EG-GFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSF-PLEDKRLGTALPLPASLT 528 (616)
Q Consensus 451 ~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l-~~~~~~~~~~~~~~~~L~ 528 (616)
++ .+|. .++.+++|+.|++++|... ...+..+..+++|++|++++| .+..+ +... ..+++|+
T Consensus 461 ~~~~~~~---~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~-------~~l~~L~ 524 (606)
T 3vq2_A 461 KDNTLSN---VFANTTNLTFLDLSKCQLE----QISWGVFDTLHRLQLLNMSHN--NLLFLDSSHY-------NQLYSLS 524 (606)
T ss_dssp GGGEECS---CCTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSS--CCSCEEGGGT-------TTCTTCC
T ss_pred CCcchHH---hhccCCCCCEEECCCCcCC----ccChhhhcccccCCEEECCCC--cCCCcCHHHc-------cCCCcCC
Confidence 55 3443 5678899999999998632 122346788999999999997 56555 3333 3689999
Q ss_pred eEecccCccccccccccccCc-cccEEEecCCCCCcc
Q 007138 529 TLWISRFPNLERLSSSIVDLQ-NLTELVLVNCPKLKY 564 (616)
Q Consensus 529 ~L~l~~c~~l~~i~~~~~~~~-~L~~L~l~~c~~l~~ 564 (616)
+|++++| .++.+|..+..++ +|++|++++++-..+
T Consensus 525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred EEECCCC-cCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999995 5889998888887 599999999654433
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=280.01 Aligned_cols=212 Identities=19% Similarity=0.168 Sum_probs=156.4
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccc--ccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNL--KIL 405 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~ 405 (616)
+++|++|+++++. +....+. ..+..+ ++|++|++++|......+..+..+++|+.|++++|... +.+
T Consensus 404 l~~L~~L~L~~N~-l~~~~~~----~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 404 LGHLEVLDLGLNE-IGQELTG----QEWRGL------ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CTTCCEEECCSSC-CEEECCS----GGGTTC------TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CCCCCEEeCCCCc-CccccCc----ccccCc------ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 6677777777733 2211111 122223 89999999999876666677888999999999998643 567
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhh-----HhhhcccccceeeecCCChHHH
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRY-----MIALHNLTNLHSLYIGGNMEIW 479 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~ 479 (616)
|..+..+++|+.|++++| .+..++.. ...+++|++|++++ +.+++..+.. +..+..+++|+.|++++|...
T Consensus 473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~- 549 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD- 549 (680)
T ss_dssp SCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-
T ss_pred CcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-
Confidence 888999999999999998 56666654 34667999999999 4676643221 123788999999999998633
Q ss_pred HHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccc-cCccccEEEec
Q 007138 480 KSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIV-DLQNLTELVLV 557 (616)
Q Consensus 480 ~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~-~~~~L~~L~l~ 557 (616)
......+..+++|+.|++++| .++.++... +..+++|++|++++| .++.++. .+. .+++|++++++
T Consensus 550 ---~i~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 550 ---EIPVEVFKDLFELKIIDLGLN--NLNTLPASV------FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECT
T ss_pred ---CCCHHHcccccCcceeECCCC--CCCcCCHhH------hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEcc
Confidence 122335788999999999987 777777653 336899999999994 6887775 344 68999999999
Q ss_pred CCCCCccc
Q 007138 558 NCPKLKYF 565 (616)
Q Consensus 558 ~c~~l~~l 565 (616)
+++-..+-
T Consensus 618 ~N~~~c~c 625 (680)
T 1ziw_A 618 FNPFDCTC 625 (680)
T ss_dssp TCCCCBCC
T ss_pred CCCcccCC
Confidence 97655443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-28 Score=272.97 Aligned_cols=510 Identities=15% Similarity=0.119 Sum_probs=335.2
Q ss_pred ccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCccccc-C---CCCCCccEEeecCCcc--h-hhhhc
Q 007138 18 IPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTF-P---EHLPALEMLVIEGCEE--L-LVSVA 90 (616)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-p---~~~~~L~~L~l~~c~~--l-~~~~~ 90 (616)
.-.+++++|++.++ .+.+..+... +.+++|++|++++|.... .+ | ..+++|+.|++++|.. + +..+.
T Consensus 21 ~lp~~l~~LdLs~N-~i~~i~~~~~----~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 21 QVLNTTERLLLSFN-YIRTVTASSF----PFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SSCTTCCEEEEESC-CCCEECSSSC----SSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCCcCEEECCCC-cCCccChhHC----cccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 34578999999987 4666655444 789999999999995443 44 3 3578899999999972 2 46788
Q ss_pred CCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCC
Q 007138 91 SLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICS 170 (616)
Q Consensus 91 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 170 (616)
.+++|++|++++|........ +..-..+++|+.|.+.+...... .+...++.+++
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~----------------------~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~ 149 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLK----------------------DGYFRNLKALTRLDLSKNQIRSL---YLHPSFGKLNS 149 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCST----------------------TCCCSSCSSCCEEEEESCCCCCC---CCCGGGGTCSS
T ss_pred CCcccCEeeCcCCCCCccccc----------------------CccccccCCCCEEECCCCccccc---ccchhHhhCCC
Confidence 999999999999976541100 00014567888888877655433 34456799999
Q ss_pred ccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCC------ccEEEEcCCCCCCCCC-
Q 007138 171 LKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSS------LREIEICKCSSLVSFP- 243 (616)
Q Consensus 171 L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~l~~~~- 243 (616)
|++|+++++. ++.+... .+..+.. ++|+.|++++|......|..++.+.+ |+.|++++|......+
T Consensus 150 L~~L~Ls~N~-i~~~~~~----~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 150 LKSIDFSSNQ-IFLVCEH----ELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp CCEEEEESSC-CCCCCSG----GGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred CCEEECCCCc-CCeeCHH----HcccccC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 9999999865 4443332 2333321 68999999999886677776666665 9999999985333333
Q ss_pred ---CCCCCCCCcEEEccCCCC--------ccccch-hhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEEecCC
Q 007138 244 ---EVALPSKLKNIWISTCDA--------LKSLPE-AWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSISDCD 309 (616)
Q Consensus 244 ---~~~~~~~L~~L~l~~~~~--------l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~ 309 (616)
......+++.+.+..+.. +..... .+.....++|++|+++++. +..+... ..+++|+.|+++++
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n- 300 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYN- 300 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESC-
T ss_pred HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCC-
Confidence 122346778887763221 111111 1111223789999998864 4444322 55689999999988
Q ss_pred CCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCC
Q 007138 310 NIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNT 389 (616)
Q Consensus 310 ~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 389 (616)
.++.+. +..+.. +++|++|+++++ .++.+ .+..+..+ ++|+.|++++|......+..+..++
T Consensus 301 ~i~~~~-~~~~~~-----l~~L~~L~Ls~N-~l~~~-----~~~~~~~l------~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 301 KINKIA-DEAFYG-----LDNLQVLNLSYN-LLGEL-----YSSNFYGL------PKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CCCEEC-TTTTTT-----CSSCCEEEEESC-CCSCC-----CSCSCSSC------TTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred cCCCCC-hHHhcC-----CCCCCEEECCCC-CCCcc-----CHHHhcCC------CCCCEEECCCCCCCccChhhhcCCC
Confidence 444431 223333 788999999884 34431 12233333 8899999999865444445577789
Q ss_pred CccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhccccccee
Q 007138 390 SLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHS 469 (616)
Q Consensus 390 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~ 469 (616)
+|+.|++++|. ++.++ .+++|+.|++++| .+..+|... .+++.+++++ +.+++... ...+..+++|+.
T Consensus 363 ~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N-~l~~l~~~~---~~l~~L~ls~-N~l~~l~~--~~~~~~l~~L~~ 430 (844)
T 3j0a_A 363 KLQTLDLRDNA-LTTIH----FIPSIPDIFLSGN-KLVTLPKIN---LTANLIHLSE-NRLENLDI--LYFLLRVPHLQI 430 (844)
T ss_dssp CCCEEEEETCC-SCCCS----SCCSCSEEEEESC-CCCCCCCCC---TTCCEEECCS-CCCCSSTT--HHHHTTCTTCCE
T ss_pred CCCEEECCCCC-CCccc----CCCCcchhccCCC-Ccccccccc---cccceeeccc-CccccCch--hhhhhcCCccce
Confidence 99999999876 34333 4788999999988 555666542 3688999988 56666422 224568889999
Q ss_pred eecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccC
Q 007138 470 LYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDL 548 (616)
Q Consensus 470 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~ 548 (616)
|++++|.... ......+..+++|+.|++++| .+...+... .....+..+++|++|++++| .++.++. .+..+
T Consensus 431 L~Ls~N~l~~---~~~~~~~~~~~~L~~L~Ls~N--~l~~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 503 (844)
T 3j0a_A 431 LILNQNRFSS---CSGDQTPSENPSLEQLFLGEN--MLQLAWETE-LCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHL 503 (844)
T ss_dssp EEEESCCCCC---CCSSSSSCSCTTCCBCEEESC--CCSSSCCSC-CCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSC
T ss_pred eeCCCCcccc---cccccccccCCccccccCCCC--ccccccccc-cchhhhcCcccccEEECCCC-cccccChhHccch
Confidence 9999886321 011123455788999999986 444332211 11123446788999999984 6777665 57788
Q ss_pred ccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchhhhhhhcCCCCcccccCCccEEEEcCeec
Q 007138 549 QNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRV 613 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~~~~~~~~~ 613 (616)
++|++|++++ ++++.++.....++|++|+++++..... ....+..+..+.+.++.+
T Consensus 504 ~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~l~~~--------~~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 504 TALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQLLAP--------NPDVFVSLSVLDITHNKF 559 (844)
T ss_dssp CSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEECCCCC--------CSCCCSSCCEEEEEEECC
T ss_pred hhhheeECCC-CCCCccChhhhhccccEEECCCCcCCCC--------ChhHhCCcCEEEecCCCc
Confidence 9999999998 7888888877778899998887753221 112234566666665543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=264.89 Aligned_cols=371 Identities=17% Similarity=0.154 Sum_probs=231.4
Q ss_pred CCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--chh-hhhcCCC
Q 007138 20 FPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--ELL-VSVASLP 93 (616)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l~-~~~~~~~ 93 (616)
+++|++|++.++. +.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|. .+. ..+..++
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHGDL----RACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSSTT----SSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCccEEECcCCc-cCccChhhh----hcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 4689999999984 666654333 779999999999985 5544443 46889999999997 233 4588999
Q ss_pred CccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccE
Q 007138 94 ALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKR 173 (616)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 173 (616)
+|++|++++|........ ..-..+++|+.|.+.++..... .+...+..+++|++
T Consensus 99 ~L~~L~Ls~n~l~~~~~~-----------------------~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVT-----------------------SLFPNLTNLQTLRIGNVETFSE---IRRIDFAGLTSLNE 152 (549)
T ss_dssp TCCEEECTTCCCSSSCSS-----------------------CSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEE
T ss_pred CCcEEECCCCcccccchh-----------------------hhhhccCCccEEECCCCccccc---cCHhhhhcccccCe
Confidence 999999999976542110 0014567888888877653322 55566788999999
Q ss_pred EeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccccc-CCCCCccEEEEcCCCCCCCCC-----CCCC
Q 007138 174 LTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSS-LSLSSLREIEICKCSSLVSFP-----EVAL 247 (616)
Q Consensus 174 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~-----~~~~ 247 (616)
|+++++. ++...+. .+..+ ++|++|++++|.. ..+|..+ +.+++|++|++++|. ++.++ ....
T Consensus 153 L~L~~n~-l~~~~~~----~l~~l----~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 153 LEIKALS-LRNYQSQ----SLKSI----RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEV 221 (549)
T ss_dssp EEEEETT-CCEECTT----TTTTC----SEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCC
T ss_pred eeccCCc-ccccChh----hhhcc----ccCceEecccCcc-cccchhhHhhcccccEEEccCCc-cccccccccchhhh
Confidence 9999876 4432221 25555 7899999988775 4555543 568899999999884 44432 2234
Q ss_pred CCCCcEEEccCCCCccccchhh--ccCCCCCccEEEeccCCCCcccc--------ccCCCCCccEEEEecCCCCCccccc
Q 007138 248 PSKLKNIWISTCDALKSLPEAW--MCDTNSSLEILSIHGCRSLTYIA--------AVQLPPSLKQLSISDCDNIRTLTVE 317 (616)
Q Consensus 248 ~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~--------~~~~~~~L~~L~l~~~~~l~~l~~~ 317 (616)
+++|+.|++.++......+..+ ....+++|+.+++++|. +..+. .....++++.+.+.++. +......
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~ 299 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLF 299 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGS
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccccc-cchhhhc
Confidence 7889999998876222111111 01334778888888764 21111 11344677777777663 2211000
Q ss_pred ccccccccccCCCccEEeccCCCCcccccccCCCcccc-cccccCCCCCcccEEEecCCCCchhhhh---hccCCCCccE
Q 007138 318 EGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL-ESLEVGNLPPSLKSLYVYGCSKLESIAE---RLDNNTSLET 393 (616)
Q Consensus 318 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l-~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~ 393 (616)
.... ......++|++|+++++. +.. +|..+ ..+ ++|++|++++|...+.+|. .+..+++|+.
T Consensus 300 ~~l~-~~~~~~~~L~~L~l~~n~-l~~------ip~~~~~~l------~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 300 YDLS-TVYSLLEKVKRITVENSK-VFL------VPCSFSQHL------KSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp CCCC-HHHHHSTTCCEEEEESSC-CCC------CCHHHHHHC------TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred ccch-hhhhhcccceEEEeccCc-ccc------CCHHHHhcC------ccccEEEccCCccccccccchhhhhccccCcE
Confidence 0000 000113567777777732 332 23222 223 6778888887776665543 2556777888
Q ss_pred EEccccccccccc---ccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 394 ISIERCGNLKILP---SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 394 L~l~~~~~l~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
|++++|. ++.++ ..+..+++|++|++++| .++.+|.....+++|++|++++| .+++
T Consensus 366 L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~ 424 (549)
T 2z81_A 366 LVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRV 424 (549)
T ss_dssp EECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSC
T ss_pred EEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Cccc
Confidence 8887765 33333 24667778888888777 55567666555667777777774 3543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=263.22 Aligned_cols=458 Identities=16% Similarity=0.138 Sum_probs=258.0
Q ss_pred CCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCcceeecccccccCCCCcee
Q 007138 49 FPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 122 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 122 (616)
+++|++|++++|. +++..|. .+++|++|++++|.. + +..+..+++|++|++++|.....+...
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------- 93 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW---------- 93 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH----------
T ss_pred CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH----------
Confidence 4677777777774 4433332 356677777776652 1 134666777777777776654422110
Q ss_pred ecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccC
Q 007138 123 CRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSC 202 (616)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~ 202 (616)
-..+++|+.|.+.+...... ..+..++.+++|++|+++++..+..++.. .+..+ +
T Consensus 94 --------------~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l----~ 148 (549)
T 2z81_A 94 --------------FGPLSSLKYLNLMGNPYQTL---GVTSLFPNLTNLQTLRIGNVETFSEIRRI----DFAGL----T 148 (549)
T ss_dssp --------------HTTCTTCCEEECTTCCCSSS---CSSCSCTTCTTCCEEEEEESSSCCEECTT----TTTTC----C
T ss_pred --------------hccCCCCcEEECCCCccccc---chhhhhhccCCccEEECCCCccccccCHh----hhhcc----c
Confidence 02345555555554433221 12234566666666666666544444332 23334 6
Q ss_pred CCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCC--CCCCCCcEEEccCCCCccccc--hhhccCCCCCcc
Q 007138 203 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV--ALPSKLKNIWISTCDALKSLP--EAWMCDTNSSLE 278 (616)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~ 278 (616)
+|++|++++|...+..|..++.+++|++|++++|. ...++.. ..+++|++|++++|. +...+ ........++|+
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCC
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhccc
Confidence 66666666666544556666666666666666653 3333321 235666666666665 22221 000112345566
Q ss_pred EEEeccCCCCcccc------ccCCCCCccEEEEecCCCCCcc-cccccccccccccCCCccEEeccCCCCcccccccCCC
Q 007138 279 ILSIHGCRSLTYIA------AVQLPPSLKQLSISDCDNIRTL-TVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNEL 351 (616)
Q Consensus 279 ~L~l~~~~~l~~~~------~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 351 (616)
.|+++++. +.... .....++++.+++++|.. ..+ .++.. .......+++++.|.+.++. +........+
T Consensus 227 ~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l 302 (549)
T 2z81_A 227 KLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPS-ESDVVSELGKVETVTIRRLH-IPQFYLFYDL 302 (549)
T ss_dssp EEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCCCC-TTTCCCCCTTCCEEEEESCB-CSCGGGSCCC
T ss_pred ceeccccc-cchhHHHHHHHHhhhhccccccccccccc-ccccccccc-chhhhhhhcccccccccccc-cchhhhcccc
Confidence 66666542 11100 012345666666666631 111 00000 00011124556666666532 1111111111
Q ss_pred cccccccccCCCCCcccEEEecCCCCchhhhhhc-cCCCCccEEEcccccccccccc---cccCCCCCcEEEeccCCCCc
Q 007138 352 PATLESLEVGNLPPSLKSLYVYGCSKLESIAERL-DNNTSLETISIERCGNLKILPS---GLHNLRQLQGIKIWNCGNLV 427 (616)
Q Consensus 352 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~---~l~~l~~L~~L~l~~~~~~~ 427 (616)
+...... ++++.|++++|. +..+|..+ ..+++|+.|++++|...+.+|. .+..+++|+.|++++| .++
T Consensus 303 ~~~~~~~------~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 374 (549)
T 2z81_A 303 STVYSLL------EKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLR 374 (549)
T ss_dssp CHHHHHS------TTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCC
T ss_pred hhhhhhc------ccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-ccc
Confidence 1111111 678888888875 44566655 4678888888888876555532 3567888888888887 444
Q ss_pred ccCC---CCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCC
Q 007138 428 SFPE---GGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD 504 (616)
Q Consensus 428 ~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 504 (616)
.++. ....+++|++|++++| .++.. |. .+..+++|+.|++++|.... .+. .-.++|+.|++++|
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~---~~~~~~~L~~L~Ls~N~l~~-----l~~--~~~~~L~~L~Ls~N- 441 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRN-TFHPM-PD---SCQWPEKMRFLNLSSTGIRV-----VKT--CIPQTLEVLDVSNN- 441 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTC-CCCCC-CS---CCCCCTTCCEEECTTSCCSC-----CCT--TSCTTCSEEECCSS-
T ss_pred ccccchhhhhcCCCCCEEECCCC-CCccC-Ch---hhcccccccEEECCCCCccc-----ccc--hhcCCceEEECCCC-
Confidence 4431 2334558888888885 56643 32 45677888888888875221 000 11257888888886
Q ss_pred CccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcCC
Q 007138 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCC 582 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c 582 (616)
.++.++. .+++|++|++++| .++.+|. ...+++|++|++++ ++++.+++.. .+++|++|++++|
T Consensus 442 -~l~~~~~----------~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 442 -NLDSFSL----------FLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp -CCSCCCC----------CCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred -Chhhhcc----------cCChhcEEECCCC-ccCcCCC-cccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCC
Confidence 5555432 5788999999984 6788885 56788999999998 6888877753 3688999999887
Q ss_pred c
Q 007138 583 P 583 (616)
Q Consensus 583 ~ 583 (616)
+
T Consensus 508 ~ 508 (549)
T 2z81_A 508 P 508 (549)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=257.79 Aligned_cols=476 Identities=18% Similarity=0.156 Sum_probs=286.1
Q ss_pred CCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--h-hhhhcCCC
Q 007138 20 FPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--L-LVSVASLP 93 (616)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l-~~~~~~~~ 93 (616)
.+++++|++.++ .+.+..+... ..+++|++|++++|. +.+..|. .+++|++|++++|.- + +..+..++
T Consensus 27 ~~~l~~L~Ls~n-~l~~~~~~~~----~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 27 PFSTKNLDLSFN-PLRHLGSYSF----FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp CSSCCEEECCSC-CCCEECTTTT----TTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred cccccEEEccCC-ccCccChhHh----hCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 357999999987 4555544333 779999999999995 5533333 478899999999962 2 25688899
Q ss_pred CccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccE
Q 007138 94 ALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKR 173 (616)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 173 (616)
+|++|++++|.....+... -..+++|+.|.+.+...... ..+..++.+++|++
T Consensus 101 ~L~~L~L~~n~l~~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFP------------------------IGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEH 153 (570)
T ss_dssp TCCEEECTTSCCCCSTTCS------------------------CTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCE
T ss_pred ccccccccccccccCCCcc------------------------ccccccccEEecCCCcccee---cChhhhcccCCCCE
Confidence 9999999999876644311 14567788888776544322 23456789999999
Q ss_pred EeeccCCCccccchhhhhhHHhhhhhccCCC----cEEEccCCCCCcccccccCCCCCccEEEEcCCCCCC-CCC-CCCC
Q 007138 174 LTITSCPKLQSLVAEEEKDQQQQLCELSCRL----EYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLV-SFP-EVAL 247 (616)
Q Consensus 174 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~-~~~~ 247 (616)
|+++++. ++.++.. .+..+ .+| +.|++++|......|..+... +|++|++++|.... .++ ....
T Consensus 154 L~l~~n~-l~~~~~~----~~~~l----~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~ 223 (570)
T 2z63_A 154 LDLSSNK-IQSIYCT----DLRVL----HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG 223 (570)
T ss_dssp EECTTSC-CCEECGG----GGHHH----HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHT
T ss_pred EeCcCCc-cceecHH----Hccch----hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcC
Confidence 9999875 5555443 35555 455 899999988744444445444 89999999873211 111 1122
Q ss_pred CCCCcEEEccCC-----CCccccchhh-ccCCCCCccEEEeccCCCCccccc--cCCCCCccEEEEecCCCCCccccccc
Q 007138 248 PSKLKNIWISTC-----DALKSLPEAW-MCDTNSSLEILSIHGCRSLTYIAA--VQLPPSLKQLSISDCDNIRTLTVEEG 319 (616)
Q Consensus 248 ~~~L~~L~l~~~-----~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~ 319 (616)
+.+++...+... ..+..++... .....-.++.++++++..+..... ...+++|+.|+++++ .++.+ +..
T Consensus 224 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l--~~~ 300 (570)
T 2z63_A 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERV--KDF 300 (570)
T ss_dssp TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSC--CBC
T ss_pred ccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhh--hhh
Confidence 444444333211 1111111110 000012344555554422211111 133456777777666 33333 443
Q ss_pred ccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccc
Q 007138 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERC 399 (616)
Q Consensus 320 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 399 (616)
+.. + +|++|+++++. +.. ++...+ ++|+.|++++|.....++. ..+++|+.|++++|
T Consensus 301 ~~~-----~-~L~~L~l~~n~-~~~-l~~~~l-------------~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n 357 (570)
T 2z63_A 301 SYN-----F-GWQHLELVNCK-FGQ-FPTLKL-------------KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN 357 (570)
T ss_dssp CSC-----C-CCSEEEEESCB-CSS-CCBCBC-------------SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS
T ss_pred hcc-----C-CccEEeeccCc-ccc-cCcccc-------------cccCEEeCcCCcccccccc--ccCCCCCEEeCcCC
Confidence 333 3 67777777643 222 221111 6677777777655444332 55667777777766
Q ss_pred cccccc--cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChH
Q 007138 400 GNLKIL--PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNME 477 (616)
Q Consensus 400 ~~l~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 477 (616)
...... +..+..+++|++|++++| .+..++.....+++|++|++++| .+++..+. ..+.++++|+.|++++|..
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESCTTS--CTTTTCTTCCEEECTTSCC
T ss_pred ccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCC-ccccccch--hhhhcCCCCCEEeCcCCcc
Confidence 533221 445566777777777776 34444433444557777777763 44444331 1355667777777776642
Q ss_pred HHHHhhhcCccccccCCccEEEEecCCCccc--cccccccccCCCCCCCCccceEecccCcccccc-ccccccCccccEE
Q 007138 478 IWKSMIERGRGFHRFSSLRHLTIRGCDDDMV--SFPLEDKRLGTALPLPASLTTLWISRFPNLERL-SSSIVDLQNLTEL 554 (616)
Q Consensus 478 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~--~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L 554 (616)
. ...+..+..+++|++|++++| .+. .++... ..+++|++|++++|. +..+ |..+..+++|++|
T Consensus 434 ~----~~~~~~~~~l~~L~~L~l~~n--~l~~~~~p~~~-------~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 434 R----VAFNGIFNGLSSLEVLKMAGN--SFQENFLPDIF-------TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp E----ECCTTTTTTCTTCCEEECTTC--EEGGGEECSCC-------TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred c----ccchhhhhcCCcCcEEECcCC--cCccccchhhh-------hcccCCCEEECCCCc-cccCChhhhhcccCCCEE
Confidence 1 112235677888888888886 332 344333 367888999998864 5554 6577888899999
Q ss_pred EecCCCCCcccCCCC--CcCCcceEEEcCCc
Q 007138 555 VLVNCPKLKYFPEKG--LPSSLLQLQIYCCP 583 (616)
Q Consensus 555 ~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 583 (616)
++++ ++++.++... .+++|++|++++++
T Consensus 500 ~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCC-CcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9988 5777777643 36788899988865
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=265.51 Aligned_cols=378 Identities=13% Similarity=0.123 Sum_probs=220.7
Q ss_pred CCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCCC------------------------------
Q 007138 21 PCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPEH------------------------------ 70 (616)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~------------------------------ 70 (616)
.++.+|+|.++ .+....+... +.+++|++|+++.+..+.|..|..
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l----~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAI----GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGG----GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCEEEEECccC-CCCCcCchHH----hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence 57999999987 4565555343 889999999995444444332210
Q ss_pred ------------------------CCCccEEeecC--Cc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCcee
Q 007138 71 ------------------------LPALEMLVIEG--CE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 122 (616)
Q Consensus 71 ------------------------~~~L~~L~l~~--c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 122 (616)
...++.+.+.. +. .++..+..+++|++|++++|..... .++..+..
T Consensus 398 ~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~-~i~~~~~~----- 471 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD-NIAVDWED----- 471 (876)
T ss_dssp GGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGG-GBSSSCSC-----
T ss_pred hhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCC-cccccccc-----
Confidence 11122222222 11 2567788999999999999986541 00000000
Q ss_pred ecCCCcceeecCCCCCC-----CCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc--cchhhhhhHHh
Q 007138 123 CRDTSNQVFLAGPLKPR-----IPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQ 195 (616)
Q Consensus 123 ~~~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~l~ 195 (616)
... ..++|.+|.. +++|+.|.+.++.... ..+..++.+++|++|+++++..++. +|.. +.
T Consensus 472 ---~s~-n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-----i~ 538 (876)
T 4ecn_A 472 ---ANS-DYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNIACNRGISAAQLKAD-----WT 538 (876)
T ss_dssp ---TTS-HHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-----HH
T ss_pred ---ccc-ccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEECcCCCCcccccchHH-----HH
Confidence 000 0112234443 5566677776654433 2336678999999999998864553 4432 44
Q ss_pred hhh---hccCCCcEEEccCCCCCccccc--ccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhc
Q 007138 196 QLC---ELSCRLEYLRLSNCEGLVKLPQ--SSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWM 270 (616)
Q Consensus 196 ~l~---~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 270 (616)
.+. ...++|++|++++|.. +.+|. .++.+++|+.|++++|. ++.+|.+..+++|+.|++++|. +..++..+
T Consensus 539 ~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l- 614 (876)
T 4ecn_A 539 RLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF- 614 (876)
T ss_dssp HHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTS-
T ss_pred hhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHH-
Confidence 431 1225899999999887 48888 89999999999999985 5688877778999999999887 44666543
Q ss_pred cCCCCC-ccEEEeccCCCCcccccc-CCC--CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCccccc
Q 007138 271 CDTNSS-LEILSIHGCRSLTYIAAV-QLP--PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIF 346 (616)
Q Consensus 271 ~~~~~~-L~~L~l~~~~~l~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 346 (616)
..+++ |+.|+++++. +..++.. ... ++|+.|++++|.-...+ +
T Consensus 615 -~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i--p----------------------------- 661 (876)
T 4ecn_A 615 -CAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG--R----------------------------- 661 (876)
T ss_dssp -CEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS--S-----------------------------
T ss_pred -hhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc--c-----------------------------
Confidence 34455 7777777654 3344322 111 12555555444211111 0
Q ss_pred ccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhc-cCCCCccEEEcccccccccccccccC--------CCCCcE
Q 007138 347 SKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL-DNNTSLETISIERCGNLKILPSGLHN--------LRQLQG 417 (616)
Q Consensus 347 ~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~l~~--------l~~L~~ 417 (616)
.++..+..+. . ++|+.|++++|... .+|..+ ..+++|+.|++++|. +..+|..+.. +++|+.
T Consensus 662 ---~l~~~l~~~~---~-~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 662 ---NISCSMDDYK---G-INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp ---SCSSCTTTCC---C-CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred ---cchhhhcccc---C-CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccE
Confidence 0100010000 0 46777777776544 455443 366777777777764 3456554322 237788
Q ss_pred EEeccCCCCcccCCCCC--CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCC
Q 007138 418 IKIWNCGNLVSFPEGGL--PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGG 474 (616)
Q Consensus 418 L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~ 474 (616)
|++++| .+..+|.... .+++|+.|++++ +.+++ +|. .+.++++|+.|++++
T Consensus 733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~-lp~---~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSY-NCFSS-FPT---QPLNSSQLKAFGIRH 785 (876)
T ss_dssp EECCSS-CCCCCCGGGSTTTCTTCCEEECCS-SCCSS-CCC---GGGGCTTCCEEECCC
T ss_pred EECCCC-CCccchHHhhhccCCCcCEEEeCC-CCCCc-cch---hhhcCCCCCEEECCC
Confidence 888777 4556666554 566788888877 45655 332 233444444444443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=265.50 Aligned_cols=346 Identities=16% Similarity=0.209 Sum_probs=257.5
Q ss_pred HhhhhhccCCCcEEEccCCCCCcc-----------------cccccC--CCCCccEEEEcCCCCCCCCC-CCCCCCCCcE
Q 007138 194 QQQLCELSCRLEYLRLSNCEGLVK-----------------LPQSSL--SLSSLREIEICKCSSLVSFP-EVALPSKLKN 253 (616)
Q Consensus 194 l~~l~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~ 253 (616)
+.++ ++|++|++++|...+. +|..++ ++++|++|++++|.....+| .+..+++|++
T Consensus 202 l~~l----~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 202 VMRL----TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp GGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred Hhcc----cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 5555 8999999999886443 899888 99999999999997777777 4567999999
Q ss_pred EEccCCCCcc--ccchhhcc----CCCCCccEEEeccCCCCccccc---cCCCCCccEEEEecCCCCC-ccccccccccc
Q 007138 254 IWISTCDALK--SLPEAWMC----DTNSSLEILSIHGCRSLTYIAA---VQLPPSLKQLSISDCDNIR-TLTVEEGIQSS 323 (616)
Q Consensus 254 L~l~~~~~l~--~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~ 323 (616)
|++++|..+. .+|..+.. ..+++|++|+++++. ++.++. ...+++|+.|+++++. ++ .+ + .+..
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~i--p-~~~~- 351 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKL--P-AFGS- 351 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEEC--C-CCEE-
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccch--h-hhCC-
Confidence 9999987444 36654321 123789999999875 557765 4677899999999884 44 55 4 3433
Q ss_pred ccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCc-ccEEEecCCCCchhhhhhccCCC--CccEEEccccc
Q 007138 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPS-LKSLYVYGCSKLESIAERLDNNT--SLETISIERCG 400 (616)
Q Consensus 324 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~ 400 (616)
+++|++|+++++ .++ .+|..+..+ ++ |++|++++|... .+|..+...+ +|+.|++++|.
T Consensus 352 ----l~~L~~L~L~~N-~l~------~lp~~l~~l------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 352 ----EIKLASLNLAYN-QIT------EIPANFCGF------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp ----EEEESEEECCSS-EEE------ECCTTSEEE------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred ----CCCCCEEECCCC-ccc------cccHhhhhh------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 678999999884 333 244445555 77 999999998755 7787666554 89999999998
Q ss_pred cccccccccc-------CCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhh----hcccccce
Q 007138 401 NLKILPSGLH-------NLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIA----LHNLTNLH 468 (616)
Q Consensus 401 ~l~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~----~~~l~~L~ 468 (616)
..+.+|..+. .+++|++|++++| .+..+|...+ .+++|++|++++ +.++.+.+..... +.++++|+
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCcc
Confidence 7777777776 7789999999998 5567776544 356899999998 4666433321111 23445999
Q ss_pred eeecCCChHHHHHhhhcCcccc--ccCCccEEEEecCCCccccccccccccCCCCCCCCccceEeccc------Cccccc
Q 007138 469 SLYIGGNMEIWKSMIERGRGFH--RFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISR------FPNLER 540 (616)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~ 540 (616)
.|++++|... ..+..+. .+++|++|++++| .++.+|.... .+++|++|++++ +...+.
T Consensus 492 ~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 492 SIDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPL-------NSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp EEECCSSCCC-----BCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGG-------GCSSCCEEECCSCBCTTCCBCCCC
T ss_pred EEECcCCcCC-----ccChhhhhccCCCcCEEECCCC--CCCCcChhhh-------cCCCCCEEECCCCcccccCccccc
Confidence 9999998633 1233444 8899999999997 6666777653 689999999954 444667
Q ss_pred cccccccCccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchh
Q 007138 541 LSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 541 i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 585 (616)
+|..+..+++|++|++++ ++++.+|.. +.++|++|++++|+..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~-N~l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGS-NDIRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCTTGGGCSSCCEEECCS-SCCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCC-CcCCccCHh-HhCcCCEEECcCCCCc
Confidence 888899999999999999 677999875 4489999999999643
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=259.19 Aligned_cols=477 Identities=15% Similarity=0.079 Sum_probs=292.0
Q ss_pred CCCcceEeeccCCCcccccC---CCCCCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCcceeecccccccCCCCcee
Q 007138 49 FPKLRELHIISCSKLQGTFP---EHLPALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 122 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p---~~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 122 (616)
.+++++|+++++. +++..+ ..+++|++|++++|.- + +..+..+++|++|++++|.....+..
T Consensus 27 ~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----------- 94 (570)
T 2z63_A 27 PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----------- 94 (570)
T ss_dssp CSSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-----------
T ss_pred cccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-----------
Confidence 4567888887774 442222 2467777777777752 2 23466777777777777765543210
Q ss_pred ecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc--cchhhhhhHHhhhhhc
Q 007138 123 CRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQLCEL 200 (616)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~l~~l~~~ 200 (616)
.-..+++|+.|.+.+..... .+...++.+++|++|+++++. ++. ++. .+..+
T Consensus 95 -------------~~~~l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~-----~~~~l--- 148 (570)
T 2z63_A 95 -------------AFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNL-IQSFKLPE-----YFSNL--- 148 (570)
T ss_dssp -------------TTTTCTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSC-CCCCCCCG-----GGGGC---
T ss_pred -------------hhcCcccccccccccccccc----CCCccccccccccEEecCCCc-cceecChh-----hhccc---
Confidence 00345666666665543322 222235677777777777754 332 222 24455
Q ss_pred cCCCcEEEccCCCCCcccccccCCCCCc----cEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCcc-ccchhhccCCC
Q 007138 201 SCRLEYLRLSNCEGLVKLPQSSLSLSSL----REIEICKCSSLVSFP-EVALPSKLKNIWISTCDALK-SLPEAWMCDTN 274 (616)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~ 274 (616)
++|++|++++|......+..++.+++| +.|++++|. ++.++ ......+|+.|++.++..-. .++..+ ..+
T Consensus 149 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~l 224 (570)
T 2z63_A 149 -TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI--QGL 224 (570)
T ss_dssp -TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHH--HTT
T ss_pred -CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccchhhhh--cCc
Confidence 677777777766543344556666666 677777763 44333 22223367777776653111 111111 223
Q ss_pred CCccEEEec--cCC---CCccccccC--CC--CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccc
Q 007138 275 SSLEILSIH--GCR---SLTYIAAVQ--LP--PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI 345 (616)
Q Consensus 275 ~~L~~L~l~--~~~---~l~~~~~~~--~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 345 (616)
+.++...+. ... .+..++... .. -.++.+.+.++..+... .+..+.. +++|++|+++++. ++
T Consensus 225 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~~-----l~~L~~L~l~~~~-l~-- 295 (570)
T 2z63_A 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNC-----LTNVSSFSLVSVT-IE-- 295 (570)
T ss_dssp TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESC-STTTTGG-----GTTCSEEEEESCE-EC--
T ss_pred cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhh-chhhhcC-----cCcccEEEecCcc-ch--
Confidence 333333221 111 111111110 00 13566666665332221 1233333 7889999999852 22
Q ss_pred cccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCC
Q 007138 346 FSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425 (616)
Q Consensus 346 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~ 425 (616)
.+|..+.. .+|++|++++|... .+|. ..+++|+.|++++|......+. ..+++|++|++++|.
T Consensus 296 ----~l~~~~~~-------~~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~- 358 (570)
T 2z63_A 296 ----RVKDFSYN-------FGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG- 358 (570)
T ss_dssp ----SCCBCCSC-------CCCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-
T ss_pred ----hhhhhhcc-------CCccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-
Confidence 23333322 37899999998655 5664 5778999999999886555543 789999999999984
Q ss_pred Cccc---CCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEec
Q 007138 426 LVSF---PEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 426 ~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
+... +.....+++|++|++++| .+++..+ .+..+++|+.|++++|.... ......+..+++|++|++++
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~----~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS----NFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE----EEETCTTCCEEECTTSEEES---CTTSCTTTTCTTCCEEECTT
T ss_pred cCccccccccccccCccCEEECCCC-ccccccc----cccccCCCCEEEccCCcccc---ccchhhhhcCCCCCEEeCcC
Confidence 4433 333445669999999995 5665543 37789999999999986321 11123578899999999999
Q ss_pred CCCccccccccccccCCCCCCCCccceEecccCccc-cccccccccCccccEEEecCCCCCcccCCC--CCcCCcceEEE
Q 007138 503 CDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL-ERLSSSIVDLQNLTELVLVNCPKLKYFPEK--GLPSSLLQLQI 579 (616)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i 579 (616)
| .+...... .+..+++|++|++++|... ..+|..+..+++|++|++++ +.+..+++. ..+++|++|++
T Consensus 431 n--~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 431 T--HTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp S--CCEECCTT------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEC
T ss_pred C--cccccchh------hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC-CccccCChhhhhcccCCCEEeC
Confidence 6 44333221 1236899999999997643 36888899999999999999 577777443 33789999999
Q ss_pred cCCchhhhhhhcCCCCcccccCCccEEEEcCeeccC
Q 007138 580 YCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRVFG 615 (616)
Q Consensus 580 ~~c~~l~~~~~~~~~~~w~~i~~i~~~~~~~~~~~~ 615 (616)
++|. +... ....+..+.++..+.+.++.+.+
T Consensus 502 ~~n~-l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 502 ASNQ-LKSV----PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSSC-CSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCc-CCCC----CHHHhhcccCCcEEEecCCcccC
Confidence 9985 3321 11234667788889888887654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=263.89 Aligned_cols=370 Identities=16% Similarity=0.196 Sum_probs=273.3
Q ss_pred chhHHhcCCCccEEeeccCCCccc------------------cchhhhhhHHh--hhhhccCCCcEEEccCCCCCccccc
Q 007138 161 HNELLQDICSLKRLTITSCPKLQS------------------LVAEEEKDQQQ--QLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~------------------l~~~~~~~~l~--~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
.+..++.+++|++|+++++. ++. +|.. +. .+ ++|++|++++|...+.+|.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~-----l~~~~l----~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED-----LKWDNL----KDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-----CCGGGC----TTCCEEEEECCTTCSSCCT
T ss_pred CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh-----hhhccc----CCCCEEEecCCcCCccChH
Confidence 44567999999999999977 555 4433 44 56 8999999999998889999
Q ss_pred ccCCCCCccEEEEcCCCCCC--CCCC-CCC------CCCCcEEEccCCCCccccch--hhccCCCCCccEEEeccCCCCc
Q 007138 221 SSLSLSSLREIEICKCSSLV--SFPE-VAL------PSKLKNIWISTCDALKSLPE--AWMCDTNSSLEILSIHGCRSLT 289 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~--~~~~-~~~------~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~~l~ 289 (616)
.++++++|++|++++|..++ .+|. +.. +++|++|++++|. +..+|. .+ ..+++|++|+++++. +.
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l--~~l~~L~~L~L~~N~-l~ 343 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL--QKMKKLGMLECLYNQ-LE 343 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH--TTCTTCCEEECCSCC-CE
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh--ccCCCCCEEeCcCCc-Cc
Confidence 99999999999999986355 3552 223 3899999999997 557776 43 677899999999875 55
Q ss_pred -cccccCCCCCccEEEEecCCCCCcccccccccccccccCCC-ccEEeccCCCCcccccccCCCcccccccccCCCCCcc
Q 007138 290 -YIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL-LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSL 367 (616)
Q Consensus 290 -~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L 367 (616)
.++....+++|+.|+++++ .++.+ +..+.. +++ |++|+++++. ++. +|..+..+.. ++|
T Consensus 344 g~ip~~~~l~~L~~L~L~~N-~l~~l--p~~l~~-----l~~~L~~L~Ls~N~-l~~------lp~~~~~~~l----~~L 404 (636)
T 4eco_A 344 GKLPAFGSEIKLASLNLAYN-QITEI--PANFCG-----FTEQVENLSFAHNK-LKY------IPNIFDAKSV----SVM 404 (636)
T ss_dssp EECCCCEEEEEESEEECCSS-EEEEC--CTTSEE-----ECTTCCEEECCSSC-CSS------CCSCCCTTCS----SCE
T ss_pred cchhhhCCCCCCCEEECCCC-ccccc--cHhhhh-----hcccCcEEEccCCc-Ccc------cchhhhhccc----Ccc
Confidence 6664455679999999988 45544 665555 778 9999999844 443 2333222211 589
Q ss_pred cEEEecCCCCchhhhhhcc-------CCCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcccCCCCCCCC--
Q 007138 368 KSLYVYGCSKLESIAERLD-------NNTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVSFPEGGLPCA-- 437 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~-- 437 (616)
+.|++++|...+.+|..+. .+++|+.|++++|.. +.+|..+ ..+++|++|++++| .+..+|...+...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccc
Confidence 9999999988887777776 778999999999874 4676654 56899999999998 4558887665432
Q ss_pred ------CceEEEccCCcccccchhhhHhhhc--ccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC-----C
Q 007138 438 ------KLRRLDISDCKRLEGGFHRYMIALH--NLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC-----D 504 (616)
Q Consensus 438 ------~L~~L~l~~c~~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~-----~ 504 (616)
+|++|++++| .++. +|. .+. .+++|+.|++++|.... .+..+..+++|+.|++++| +
T Consensus 483 ~~~~l~~L~~L~Ls~N-~l~~-lp~---~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFN-KLTK-LSD---DFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp ECTTGGGCCEEECCSS-CCCB-CCG---GGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred cccccCCccEEECcCC-cCCc-cCh---hhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccC
Confidence 8999999994 6764 443 444 89999999999997431 3456778999999999763 1
Q ss_pred CccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCC----------cCCc
Q 007138 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGL----------PSSL 574 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----------~~~L 574 (616)
.....+|.... .+++|++|++++| .++.+|..+. ++|++|++++ +.+..+..... +...
T Consensus 553 ~l~~~~p~~l~-------~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~~ 621 (636)
T 4eco_A 553 RTLREWPEGIT-------LCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKD-NPNISIDLSYVCPYIEAGMYMLFYD 621 (636)
T ss_dssp BCCCCCCTTGG-------GCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCS-CTTCEEECTTTHHHHHTTCCEEECC
T ss_pred cccccChHHHh-------cCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcC-CCCccccHHhcchhhhcccceeecC
Confidence 22345555443 6899999999995 5699997654 8999999999 56666554322 1233
Q ss_pred ceEEEcCCchhh
Q 007138 575 LQLQIYCCPLIA 586 (616)
Q Consensus 575 ~~L~i~~c~~l~ 586 (616)
+..++.+|+.++
T Consensus 622 ~~~~i~~C~~L~ 633 (636)
T 4eco_A 622 KTQDIRGCDALD 633 (636)
T ss_dssp TTSEEESCGGGC
T ss_pred CccccCCCcccc
Confidence 455788888764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=255.56 Aligned_cols=447 Identities=17% Similarity=0.122 Sum_probs=282.3
Q ss_pred ceEeeccCCCcccccCCCC-CCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCcceeecc-cccccCCCCceeecCCC
Q 007138 53 RELHIISCSKLQGTFPEHL-PALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVVWRS-ATDHLGSQNSVVCRDTS 127 (616)
Q Consensus 53 ~~L~l~~c~~l~~~~p~~~-~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 127 (616)
++|+++++. ++ .+|..+ ++|++|++++|.. + +..+..+++|++|++++|....... ..
T Consensus 3 ~~l~ls~n~-l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------- 65 (520)
T 2z7x_B 3 FLVDRSKNG-LI-HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF--------------- 65 (520)
T ss_dssp CEEECTTSC-CS-SCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG---------------
T ss_pred ceEecCCCC-cc-cccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh---------------
Confidence 356666653 44 455432 5677777777652 2 2457777788888888777655321 11
Q ss_pred cceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEE
Q 007138 128 NQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYL 207 (616)
Q Consensus 128 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L 207 (616)
..+++|+.|.+.+..-.. ++.. .+++|++|+++++. ++.++.. ..+..+ ++|++|
T Consensus 66 ----------~~l~~L~~L~Ls~N~l~~----lp~~---~l~~L~~L~L~~N~-l~~~~~p---~~~~~l----~~L~~L 120 (520)
T 2z7x_B 66 ----------KFNQELEYLDLSHNKLVK----ISCH---PTVNLKHLDLSFNA-FDALPIC---KEFGNM----SQLKFL 120 (520)
T ss_dssp ----------TTCTTCCEEECCSSCCCE----EECC---CCCCCSEEECCSSC-CSSCCCC---GGGGGC----TTCCEE
T ss_pred ----------hcccCCCEEecCCCceee----cCcc---ccCCccEEeccCCc-cccccch---hhhccC----CcceEE
Confidence 345556666555543322 2222 67888888888875 4432110 135556 788888
Q ss_pred EccCCCCCcccccccCCCCCc--cEEEEcCCCC--CCCCCC-CCCCC-CCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 208 RLSNCEGLVKLPQSSLSLSSL--REIEICKCSS--LVSFPE-VALPS-KLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 208 ~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++++|.... ..++.+++| ++|++++|.. ....|. +..+. ....+++.++.....++.... ..+++|+.++
T Consensus 121 ~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~ 196 (520)
T 2z7x_B 121 GLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSN 196 (520)
T ss_dssp EEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECC
T ss_pred EecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhh-hcccceeecc
Confidence 888877533 235556666 8888888754 222221 11111 223456666654444433211 4467888888
Q ss_pred eccCC-------CCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccc
Q 007138 282 IHGCR-------SLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPAT 354 (616)
Q Consensus 282 l~~~~-------~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 354 (616)
++++. ....++.....++|+.|+++++. +....+.. ... ....++|++|+++++. ++. .+|..
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~-~~~--~~~~~~L~~L~l~~n~-l~~-----~~p~~ 266 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-TTWNSFIR-ILQ--LVWHTTVWYFSISNVK-LQG-----QLDFR 266 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE-EEHHHHHH-HHH--HHHTSSCSEEEEEEEE-EES-----CCCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccc-cCHHHHHH-HHH--HhhhCcccEEEeeccc-ccC-----ccccc
Confidence 88754 11122223456788888887763 22211111 000 0113579999998853 221 23333
Q ss_pred c-----cccccCCCCCcccEEEecCCCCchhhh-hhccCC---CCccEEEcccccccccccccccCCCCCcEEEeccCCC
Q 007138 355 L-----ESLEVGNLPPSLKSLYVYGCSKLESIA-ERLDNN---TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425 (616)
Q Consensus 355 l-----~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~ 425 (616)
+ ..+ ++|+.++++++.. .+| ..+..+ ++|+.|++++|.... ++ ....+++|++|++++|..
T Consensus 267 ~~~~~~~~l------~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 267 DFDYSGTSL------KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML-CPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp CCCCCSCCC------CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCC
T ss_pred hhhcccccC------ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc-chhhCCcccEEEeECCcc
Confidence 3 333 8899999998866 455 223222 579999999987433 22 126889999999999965
Q ss_pred CcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCC
Q 007138 426 LVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDD 505 (616)
Q Consensus 426 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 505 (616)
...+|.....+++|++|++++| .+++. +.....++++++|+.|++++|.... ......+..+++|++|++++|
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~l~~L~~L~Ls~N~l~~---~l~~~~~~~l~~L~~L~Ls~N-- 409 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMN-QLKEL-SKIAEMTTQMKSLQQLDISQNSVSY---DEKKGDCSWTKSLLSLNMSSN-- 409 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSS-CCCBH-HHHHHHHTTCTTCCEEECCSSCCBC---CGGGCSCCCCTTCCEEECCSS--
T ss_pred ChhhhhhhccCCCCCEEEccCC-ccCcc-ccchHHHhhCCCCCEEECCCCcCCc---ccccchhccCccCCEEECcCC--
Confidence 5556776677789999999994 66652 2223467899999999999986331 012224677899999999996
Q ss_pred ccc-cccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcCC
Q 007138 506 DMV-SFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCC 582 (616)
Q Consensus 506 ~l~-~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c 582 (616)
.+. .++.. ..++|++|++++| .++.+|..+..+++|++|++++ ++++.+|... .+++|++|+++++
T Consensus 410 ~l~~~~~~~---------l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 410 ILTDTIFRC---------LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCGGGGGS---------CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcchhhh---------hcccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCC
Confidence 443 33332 2379999999995 6889998788999999999999 6899999853 3789999999987
Q ss_pred c
Q 007138 583 P 583 (616)
Q Consensus 583 ~ 583 (616)
+
T Consensus 479 ~ 479 (520)
T 2z7x_B 479 P 479 (520)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=262.76 Aligned_cols=479 Identities=14% Similarity=0.074 Sum_probs=322.5
Q ss_pred CCCcceEeeccCCCcccccCC---CCCCccEEeecCCcch----hhhhcCCCCccEEEeCCCcceeecc-cccccCCCCc
Q 007138 49 FPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEEL----LVSVASLPALCKFEIGGCKKVVWRS-ATDHLGSQNS 120 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~ 120 (616)
.++|++|+++++. +++..|. .+++|++|++++|... +..+..+++|++|++++|....... ..
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-------- 93 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-------- 93 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS--------
T ss_pred CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc--------
Confidence 6899999999985 5534443 5788999999999533 4668999999999999998766421 11
Q ss_pred eeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccc-hhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhh
Q 007138 121 VVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSH-NELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCE 199 (616)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~ 199 (616)
..+++|+.|.+.++.-... .+ ...++.+++|++|+++++. ++.+... ..+.++
T Consensus 94 -----------------~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~---~~~~~L-- 147 (844)
T 3j0a_A 94 -----------------QGLFHLFELRLYFCGLSDA---VLKDGYFRNLKALTRLDLSKNQ-IRSLYLH---PSFGKL-- 147 (844)
T ss_dssp -----------------CSCSSCCCEECTTCCCSSC---CSTTCCCSSCSSCCEEEEESCC-CCCCCCC---GGGGTC--
T ss_pred -----------------cCCcccCEeeCcCCCCCcc---cccCccccccCCCCEEECCCCc-ccccccc---hhHhhC--
Confidence 3566777777766544321 22 2347899999999999976 4443221 236666
Q ss_pred ccCCCcEEEccCCCCCcccccccCCC--CCccEEEEcCCCCCCCCC-CCCCCC------CCcEEEccCCCCccccchhhc
Q 007138 200 LSCRLEYLRLSNCEGLVKLPQSSLSL--SSLREIEICKCSSLVSFP-EVALPS------KLKNIWISTCDALKSLPEAWM 270 (616)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~-~~~~~~------~L~~L~l~~~~~l~~~~~~~~ 270 (616)
++|++|++++|......+..++.+ ++|+.|++++|......+ ....++ +|+.|++++|......+..+.
T Consensus 148 --~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 148 --NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp --SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred --CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 899999999988755667777766 899999999986444443 222333 499999999864433433321
Q ss_pred -cCCCCCccEEEeccCC--------CCcccccc----CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEecc
Q 007138 271 -CDTNSSLEILSIHGCR--------SLTYIAAV----QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDIS 337 (616)
Q Consensus 271 -~~~~~~L~~L~l~~~~--------~l~~~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 337 (616)
......++.+.++.+. .+...... ..+++|+.|+++++. +..+. +..+.. +++|+.|+++
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~-~~~~~~-----l~~L~~L~L~ 298 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLN-SRVFET-----LKDLKVLNLA 298 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEEC-SCCSSS-----CCCCCEEEEE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccC-hhhhhc-----CCCCCEEECC
Confidence 1233678888876321 11111111 123689999998884 44331 233333 7889999999
Q ss_pred CCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcE
Q 007138 338 SCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQG 417 (616)
Q Consensus 338 ~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 417 (616)
++ .++.+.+ ..+..+ ++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.
T Consensus 299 ~n-~i~~~~~-----~~~~~l------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 299 YN-KINKIAD-----EAFYGL------DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SC-CCCEECT-----TTTTTC------SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred CC-cCCCCCh-----HHhcCC------CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 84 4444221 222333 88999999999776666778888999999999998643333446788999999
Q ss_pred EEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccE
Q 007138 418 IKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRH 497 (616)
Q Consensus 418 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 497 (616)
|++++| .+..++. +++|+.+++++ +.++.. |. ...+++.++++.|..... .....+..+++|+.
T Consensus 367 L~Ls~N-~l~~i~~----~~~L~~L~l~~-N~l~~l-~~------~~~~l~~L~ls~N~l~~l---~~~~~~~~l~~L~~ 430 (844)
T 3j0a_A 367 LDLRDN-ALTTIHF----IPSIPDIFLSG-NKLVTL-PK------INLTANLIHLSENRLENL---DILYFLLRVPHLQI 430 (844)
T ss_dssp EEEETC-CSCCCSS----CCSCSEEEEES-CCCCCC-CC------CCTTCCEEECCSCCCCSS---TTHHHHTTCTTCCE
T ss_pred EECCCC-CCCcccC----CCCcchhccCC-CCcccc-cc------cccccceeecccCccccC---chhhhhhcCCccce
Confidence 999998 4555543 45899999998 456543 21 245788999998863210 00012357899999
Q ss_pred EEEecCCCccccccccccccCCCCCCCCccceEecccCcccccc------ccccccCccccEEEecCCCCCcccCCCC--
Q 007138 498 LTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL------SSSIVDLQNLTELVLVNCPKLKYFPEKG-- 569 (616)
Q Consensus 498 L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i------~~~~~~~~~L~~L~l~~c~~l~~l~~~~-- 569 (616)
|++++| .+..++... ....+++|+.|++++| .+..+ +..+..+++|++|++++ ++++.++...
T Consensus 431 L~Ls~N--~l~~~~~~~-----~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~ 501 (844)
T 3j0a_A 431 LILNQN--RFSSCSGDQ-----TPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFS 501 (844)
T ss_dssp EEEESC--CCCCCCSSS-----SSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSS
T ss_pred eeCCCC--ccccccccc-----ccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCC-CcccccChhHcc
Confidence 999997 555443321 1235789999999995 45432 23577899999999999 6888888754
Q ss_pred CcCCcceEEEcCCchhhhhhhcCCCCcccccCCccEEEEcCeeccC
Q 007138 570 LPSSLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRVFG 615 (616)
Q Consensus 570 ~~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~~~~~~~~~~~ 615 (616)
.+++|++|+++++. ++.. .+... -..+..+.+.++.+.+
T Consensus 502 ~l~~L~~L~Ls~N~-l~~l-----~~~~~-~~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 502 HLTALRGLSLNSNR-LTVL-----SHNDL-PANLEILDISRNQLLA 540 (844)
T ss_dssp SCCSCSEEEEESCC-CSSC-----CCCCC-CSCCCEEEEEEECCCC
T ss_pred chhhhheeECCCCC-CCcc-----Chhhh-hccccEEECCCCcCCC
Confidence 37899999999985 3321 11111 1677788887776543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=260.48 Aligned_cols=276 Identities=17% Similarity=0.221 Sum_probs=185.6
Q ss_pred chhHHhcCCCccEEeeccCCCccc------------------cchhhhhhHHh--hhhhccCCCcEEEccCCCCCccccc
Q 007138 161 HNELLQDICSLKRLTITSCPKLQS------------------LVAEEEKDQQQ--QLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~------------------l~~~~~~~~l~--~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
.+..++.+++|++|+++++. ++. +|.. +. .+ ++|++|++++|...+.+|.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~-----l~f~~L----~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE-----LSWSNL----KDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-----CCGGGC----TTCCEEEEESCTTCCSCCG
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh-----hhhccC----CCCCEEECcCCCCCccChH
Confidence 34557889999999999876 444 3332 33 55 8899999999888788898
Q ss_pred ccCCCCCccEEEEcCCCCCCC--CC--------CCCCCCCCcEEEccCCCCccccch--hhccCCCCCccEEEeccCCCC
Q 007138 221 SSLSLSSLREIEICKCSSLVS--FP--------EVALPSKLKNIWISTCDALKSLPE--AWMCDTNSSLEILSIHGCRSL 288 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~~--~~--------~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~~l 288 (616)
.++++++|+.|++++|..++. +| ....+++|++|++++|. +..+|. .+ ..+++|+.|+++++. +
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l--~~L~~L~~L~Ls~N~-l 585 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL--QKMVKLGLLDCVHNK-V 585 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH--TTCTTCCEEECTTSC-C
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh--hcCCCCCEEECCCCC-c
Confidence 899999999999998863443 44 22346689999999887 457776 33 667889999998865 5
Q ss_pred ccccccCCCCCccEEEEecCCCCCcccccccccccccccCCC-ccEEeccCCCCcccccccCCCcccccccccCCCCCcc
Q 007138 289 TYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL-LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSL 367 (616)
Q Consensus 289 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L 367 (616)
..++....+++|+.|+++++ .+..+ +..+.. +++ |++|+++++. ++. +|..+..+.. ++|
T Consensus 586 ~~lp~~~~L~~L~~L~Ls~N-~l~~l--p~~l~~-----l~~~L~~L~Ls~N~-L~~------lp~~~~~~~~----~~L 646 (876)
T 4ecn_A 586 RHLEAFGTNVKLTDLKLDYN-QIEEI--PEDFCA-----FTDQVEGLGFSHNK-LKY------IPNIFNAKSV----YVM 646 (876)
T ss_dssp CBCCCCCTTSEESEEECCSS-CCSCC--CTTSCE-----ECTTCCEEECCSSC-CCS------CCSCCCTTCS----SCE
T ss_pred ccchhhcCCCcceEEECcCC-ccccc--hHHHhh-----ccccCCEEECcCCC-CCc------Cchhhhcccc----CCC
Confidence 57775567788899998888 45544 555554 677 8889888843 433 2222222200 458
Q ss_pred cEEEecCCCCchhhhhh---cc--CCCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcccCCCCCCC-----
Q 007138 368 KSLYVYGCSKLESIAER---LD--NNTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVSFPEGGLPC----- 436 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~----- 436 (616)
+.|++++|...+.+|.. .. ..++|+.|++++|.. ..+|..+ ..+++|+.|++++| .+..+|...+..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccc
Confidence 88888888766544422 22 345888888888764 4666654 47888888888887 555777655432
Q ss_pred ---CCceEEEccCCcccccchhhhHhhhc--ccccceeeecCCCh
Q 007138 437 ---AKLRRLDISDCKRLEGGFHRYMIALH--NLTNLHSLYIGGNM 476 (616)
Q Consensus 437 ---~~L~~L~l~~c~~l~~~~~~~~~~~~--~l~~L~~L~l~~~~ 476 (616)
++|+.|++++| .++. +|. .+. .+++|+.|++++|.
T Consensus 725 ~nl~~L~~L~Ls~N-~L~~-lp~---~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 725 KNTYLLTTIDLRFN-KLTS-LSD---DFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp TTGGGCCEEECCSS-CCCC-CCG---GGSTTTCTTCCEEECCSSC
T ss_pred cccCCccEEECCCC-CCcc-chH---HhhhccCCCcCEEEeCCCC
Confidence 27888888884 5653 332 222 44455555555443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=247.56 Aligned_cols=448 Identities=15% Similarity=0.082 Sum_probs=270.4
Q ss_pred ceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC---CCCCCccEEeecCCcc--h-hhhhcCCCCccE
Q 007138 24 ETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP---EHLPALEMLVIEGCEE--L-LVSVASLPALCK 97 (616)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~ 97 (616)
++|++.++ .+.++. ... +++|++|++++|. +.+..| ..+++|++|++++|.- + +..+..+++|++
T Consensus 3 ~~l~ls~n-~l~~ip-~~~------~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVP-KDL------SQKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTS-CCSSCC-CSC------CTTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCCC-Cccccc-ccc------cccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 45666665 344432 122 3788888888875 443332 3577888888888862 2 356788888888
Q ss_pred EEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeec
Q 007138 98 FEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTIT 177 (616)
Q Consensus 98 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 177 (616)
|++++|....++. ..+++|+.|.+.+...... ..+..++.+++|++|+++
T Consensus 74 L~Ls~N~l~~lp~---------------------------~~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 74 LDLSHNKLVKISC---------------------------HPTVNLKHLDLSFNAFDAL---PICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp EECCSSCCCEEEC---------------------------CCCCCCSEEECCSSCCSSC---CCCGGGGGCTTCCEEEEE
T ss_pred EecCCCceeecCc---------------------------cccCCccEEeccCCccccc---cchhhhccCCcceEEEec
Confidence 8888887665432 1467777777776654332 234567888899999988
Q ss_pred cCCCccccchhhhhhHHhhhhhccCCC--cEEEccCCCC--CcccccccCCCC-CccEEEEcCCCCCCCCCC--CCCCCC
Q 007138 178 SCPKLQSLVAEEEKDQQQQLCELSCRL--EYLRLSNCEG--LVKLPQSSLSLS-SLREIEICKCSSLVSFPE--VALPSK 250 (616)
Q Consensus 178 ~~~~l~~l~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~--~~~~~~ 250 (616)
++. ++. ..+..+ ++| ++|++++|.. ....|..+..+. +..++++++|.....++. ...+++
T Consensus 124 ~n~-l~~-------~~~~~l----~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 191 (520)
T 2z7x_B 124 TTH-LEK-------SSVLPI----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191 (520)
T ss_dssp ESS-CCG-------GGGGGG----TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSE
T ss_pred Ccc-cch-------hhcccc----ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccc
Confidence 865 333 124445 666 8999988876 556666666655 233455566654444442 334777
Q ss_pred CcEEEccCCCC-------ccccchhhccCCCCCccEEEeccCCCCcc-----ccccCCCCCccEEEEecCCCCCcccccc
Q 007138 251 LKNIWISTCDA-------LKSLPEAWMCDTNSSLEILSIHGCRSLTY-----IAAVQLPPSLKQLSISDCDNIRTLTVEE 318 (616)
Q Consensus 251 L~~L~l~~~~~-------l~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 318 (616)
|+.+++++|.. ...++.. ..+++|+.|+++++. +.. +......++|+.|++++|.-...+ +.
T Consensus 192 L~~L~l~~n~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~ 265 (520)
T 2z7x_B 192 LELSNIKCVLEDNKCSYFLSILAKL---QTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQL--DF 265 (520)
T ss_dssp EEECCEEECCSTTTTHHHHHHHHGG---GGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC--CC
T ss_pred eeeccccccccccccceeecchhhh---ccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCcc--cc
Confidence 88888877641 1112211 345677777776543 111 111112347777777777322233 33
Q ss_pred cccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccc
Q 007138 319 GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIER 398 (616)
Q Consensus 319 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (616)
.+.......+++|+.++++++.- . +|...+...+.. .+++.|++++|..... + ....+++|+.|++++
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~--~-~p~~~~~~~~~~-------~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVF--G-FPQSYIYEIFSN-------MNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSN 333 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCC--C-SCTHHHHHHHHT-------CCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCS
T ss_pred chhhcccccCceeEeccccccce--e-cchhhhhccccc-------CceeEEEcCCCccccc-c-chhhCCcccEEEeEC
Confidence 33111112256677777766332 1 111111111111 3577777777754321 1 124667777777777
Q ss_pred ccccccccccccCCCCCcEEEeccCCCCc--ccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCCh
Q 007138 399 CGNLKILPSGLHNLRQLQGIKIWNCGNLV--SFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNM 476 (616)
Q Consensus 399 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 476 (616)
|...+.+|..+..+++|+.|++++|.... .+|.....+++|++|++++ +.+++.+|.. .+..+++|+.|++++|.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~--~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKG--DCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS-SCCBCCGGGC--SCCCCTTCCEEECCSSC
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC-CcCCcccccc--hhccCccCCEEECcCCC
Confidence 76555566677777777777777773322 2333334455777777777 4565533321 35566777777777775
Q ss_pred HHHHHhhhcCcccccc-CCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccEE
Q 007138 477 EIWKSMIERGRGFHRF-SSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTEL 554 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L 554 (616)
... .....+ ++|+.|++++| .++.+|.... .+++|++|++++| .++.+|.. +..+++|++|
T Consensus 411 l~~-------~~~~~l~~~L~~L~Ls~N--~l~~ip~~~~-------~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 411 LTD-------TIFRCLPPRIKVLDLHSN--KIKSIPKQVV-------KLEALQELNVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCG-------GGGGSCCTTCCEEECCSS--CCCCCCGGGG-------GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCc-------chhhhhcccCCEEECCCC--cccccchhhh-------cCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence 321 011223 68999999997 7778887653 6899999999995 68889875 8889999999
Q ss_pred EecCCC
Q 007138 555 VLVNCP 560 (616)
Q Consensus 555 ~l~~c~ 560 (616)
++++++
T Consensus 474 ~l~~N~ 479 (520)
T 2z7x_B 474 WLHTNP 479 (520)
T ss_dssp ECCSSC
T ss_pred ECcCCC
Confidence 999953
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-23 Score=231.76 Aligned_cols=479 Identities=17% Similarity=0.163 Sum_probs=296.8
Q ss_pred CcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC-C---CCCCccEEeecCCc--chh-hhhcCCCC
Q 007138 22 CLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP-E---HLPALEMLVIEGCE--ELL-VSVASLPA 94 (616)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~---~~~~L~~L~l~~c~--~l~-~~~~~~~~ 94 (616)
++++|++++. .++++.+... ..+++|++|++++|. ++ .+| . .+++|++|+|++|. .++ ..+..+++
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f----~~l~~L~~L~Ls~N~-i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSF----FSFPELQVLDLSRCE-IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTT----TTCTTCCEEECTTCC-CC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCC-CCCCCCHHHH----hCCCCCCEEECCCCc-CC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 6888888885 5666654333 678889999998885 55 343 2 46788899998886 233 45778888
Q ss_pred ccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEE
Q 007138 95 LCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRL 174 (616)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 174 (616)
|++|++++|....++... -..+++|+.|.+.+...... ..+..+..+++|++|
T Consensus 126 L~~L~Ls~N~l~~l~~~~------------------------~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFP------------------------IGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHL 178 (635)
T ss_dssp CCEEECTTSCCCCSTTCC------------------------CTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEE
T ss_pred CCEEECCCCcCCCCChhh------------------------hhcCcccCeeccccCccccC---CCchhhccchhhhhh
Confidence 999999888765543210 13466777777766543322 345667889999999
Q ss_pred eeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCc
Q 007138 175 TITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLK 252 (616)
Q Consensus 175 ~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~ 252 (616)
+++++. ++.+... .+..+.........++++.+.. +.++........++.+++.++.....+. ....+..++
T Consensus 179 ~L~~N~-l~~~~~~----~l~~L~~l~~~~~~~~ls~n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~ 252 (635)
T 4g8a_A 179 DLSSNK-IQSIYCT----DLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 252 (635)
T ss_dssp ECCSSC-CCEECGG----GGHHHHTCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCE
T ss_pred cccCcc-ccccccc----cccchhhhhhhhhhhhcccCcc-cccCcccccchhhhhhhhhcccccccccchhhcCCcccc
Confidence 999865 6655443 3455544445566788888765 5555555555566777776653211111 111233333
Q ss_pred EEEccCCC-----Cccccchh-h-------------------------ccCCCCCccEEEeccCCCCccccccCCCCCcc
Q 007138 253 NIWISTCD-----ALKSLPEA-W-------------------------MCDTNSSLEILSIHGCRSLTYIAAVQLPPSLK 301 (616)
Q Consensus 253 ~L~l~~~~-----~l~~~~~~-~-------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 301 (616)
...+.... .+...... + ......+++.+.+.++. +..+.......+++
T Consensus 253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~ 331 (635)
T 4g8a_A 253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQ 331 (635)
T ss_dssp EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGGSCCCCS
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccccchhhh
Confidence 33322110 00000000 0 00111334444444332 22222233444566
Q ss_pred EEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch--
Q 007138 302 QLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE-- 379 (616)
Q Consensus 302 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~-- 379 (616)
.|++.++. +..+ +. ..+..|+.+.+.... ...... ...+ ++|+.++++.+....
T Consensus 332 ~L~l~~~~-~~~~--~~-------~~l~~L~~l~l~~n~-~~~~~~-------~~~l------~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 332 HLELVNCK-FGQF--PT-------LKLKSLKRLTFTSNK-GGNAFS-------EVDL------PSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp EEEEESCE-ESSC--CC-------CBCTTCCEEEEESCC-SCCBCC-------CCBC------TTCCEEECCSSCCBEEE
T ss_pred hhhccccc-ccCc--Cc-------ccchhhhhccccccc-CCCCcc-------cccc------cccccchhhcccccccc
Confidence 66666652 2222 11 113456666665522 111011 1111 788999998876542
Q ss_pred hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhhH
Q 007138 380 SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRYM 458 (616)
Q Consensus 380 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~ 458 (616)
..+.......+|+.+++..+.. ..++..+..+++|+.+++..+......+.. ...+++++.++++. +.+.+..+.
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~-n~l~~~~~~-- 463 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNG-- 463 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT-SCCEECCTT--
T ss_pred ccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhccccccccccccccccccccccccc-ccccccccc--
Confidence 2344556677899999988664 345556778899999999887544444332 23456899999988 566666554
Q ss_pred hhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccc
Q 007138 459 IALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL 538 (616)
Q Consensus 459 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 538 (616)
.+..+++|+.|++++|.... ...+..+..+++|+.|++++| .++.++... +..+++|++|++++ +.+
T Consensus 464 -~~~~~~~L~~L~Ls~N~~~~---~~~~~~~~~l~~L~~L~Ls~N--~L~~l~~~~------f~~l~~L~~L~Ls~-N~l 530 (635)
T 4g8a_A 464 -IFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQC--QLEQLSPTA------FNSLSSLQVLNMSH-NNF 530 (635)
T ss_dssp -TTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECTT-SCC
T ss_pred -ccccchhhhhhhhhhccccc---ccCchhhhhccccCEEECCCC--ccCCcChHH------HcCCCCCCEEECCC-CcC
Confidence 56778899999999885221 233456888999999999997 677665432 34689999999999 568
Q ss_pred ccccc-ccccCccccEEEecCCCCCcccCCCCC---cCCcceEEEcCCc
Q 007138 539 ERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL---PSSLLQLQIYCCP 583 (616)
Q Consensus 539 ~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~ 583 (616)
+.++. .+..+++|++|++++ +++..+++..+ +++|++|+++++|
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 87765 678899999999999 88888877543 4689999999865
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-26 Score=243.83 Aligned_cols=457 Identities=15% Similarity=0.103 Sum_probs=266.4
Q ss_pred CCCcceEeeccCCCcccccCCC-CCCccEEeecCCc--chh-hhhcCCCCccEEEeCCCcceeecccccccCCCCceeec
Q 007138 49 FPKLRELHIISCSKLQGTFPEH-LPALEMLVIEGCE--ELL-VSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCR 124 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p~~-~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (616)
+...++++++++. ++ .+|.. .++|++|++++|. .+. ..+..+++|++|++++|.........
T Consensus 30 ~~~~~~l~ls~~~-L~-~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------ 95 (562)
T 3a79_B 30 NELESMVDYSNRN-LT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV------------ 95 (562)
T ss_dssp ---CCEEECTTSC-CC-SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT------------
T ss_pred cCCCcEEEcCCCC-Cc-cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH------------
Confidence 5555888888874 65 56653 4678888888886 222 46788888888888888765532110
Q ss_pred CCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCC
Q 007138 125 DTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRL 204 (616)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L 204 (616)
-..+++|+.|.+.+..-.. ++.. .+++|++|+++++. ++.++.. ..+..+ ++|
T Consensus 96 ------------~~~l~~L~~L~Ls~N~l~~----lp~~---~l~~L~~L~Ls~N~-l~~l~~p---~~~~~l----~~L 148 (562)
T 3a79_B 96 ------------FLFNQDLEYLDVSHNRLQN----ISCC---PMASLRHLDLSFND-FDVLPVC---KEFGNL----TKL 148 (562)
T ss_dssp ------------TTTCTTCCEEECTTSCCCE----ECSC---CCTTCSEEECCSSC-CSBCCCC---GGGGGC----TTC
T ss_pred ------------hCCCCCCCEEECCCCcCCc----cCcc---ccccCCEEECCCCC-ccccCch---Hhhccc----Ccc
Confidence 0234555555555443321 2222 56777777777654 4443211 124444 677
Q ss_pred cEEEccCCCCCcccccccCCCCCc--cEEEEcCCCC--CCCCCC-CCCCC-CCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 205 EYLRLSNCEGLVKLPQSSLSLSSL--REIEICKCSS--LVSFPE-VALPS-KLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|++++|.... ..++.+++| ++|++++|.. ....+. +..+. ..-.++++++.....++.. ....+++|+
T Consensus 149 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-~~~~l~~L~ 224 (562)
T 3a79_B 149 TFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQ 224 (562)
T ss_dssp CEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE-EESSEEEEE
T ss_pred cEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh-cccccceEE
Confidence 777777765432 123334444 7777776643 122221 11111 0113344444433322221 113446677
Q ss_pred EEEeccCCC-Ccc----ccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcc
Q 007138 279 ILSIHGCRS-LTY----IAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPA 353 (616)
Q Consensus 279 ~L~l~~~~~-l~~----~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 353 (616)
.++++++.. ... ++.....++++.+++.++. +..-.+.. .. .....++|++|+++++. ++...|...+..
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~-~~--~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~ 299 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVK-LF--QFFWPRPVEYLNIYNLT-ITERIDREEFTY 299 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHH-HH--HHHTTSSEEEEEEEEEE-ECSCCCCCCCCC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHHHH-HH--HhhhcccccEEEEeccE-eeccccchhhhc
Confidence 777765421 000 1111334567777766652 22110000 00 00113478899888853 221122222111
Q ss_pred cccccccCCCCCcccEEEecCCCCchhhhh-h---ccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc
Q 007138 354 TLESLEVGNLPPSLKSLYVYGCSKLESIAE-R---LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF 429 (616)
Q Consensus 354 ~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~ 429 (616)
....+ ..|+.+++..+.. .+|. . .....+|+.|++++|.... ++ ....+++|++|++++|.....+
T Consensus 300 ~~~~L------~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 300 SETAL------KSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp CSCSC------CEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTT
T ss_pred ccccc------hheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc-cc-CccCCCCceEEECCCCccccch
Confidence 11222 5555556655543 2331 1 1122579999999986432 21 1268899999999999655556
Q ss_pred CCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccc
Q 007138 430 PEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS 509 (616)
Q Consensus 430 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~ 509 (616)
|.....+++|++|++++ +.+++. +.....+.++++|+.|++++|.... ......+..+++|++|++++| .++.
T Consensus 370 ~~~~~~l~~L~~L~L~~-N~l~~~-~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~~l~~L~~L~l~~n--~l~~ 442 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQR-NGLKNF-FKVALMTKNMSSLETLDVSLNSLNS---HAYDRTCAWAESILVLNLSSN--MLTG 442 (562)
T ss_dssp TTTCCSCSSCCEEECCS-SCCCBT-THHHHTTTTCTTCCEEECTTSCCBS---CCSSCCCCCCTTCCEEECCSS--CCCG
T ss_pred hhhhcccCCCCEEECCC-CCcCCc-ccchhhhcCCCCCCEEECCCCcCCC---ccChhhhcCcccCCEEECCCC--CCCc
Confidence 66667778999999999 567663 2223467899999999999986321 122234678899999999997 4432
Q ss_pred -ccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC--CCcCCcceEEEcCCc
Q 007138 510 -FPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK--GLPSSLLQLQIYCCP 583 (616)
Q Consensus 510 -l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 583 (616)
++.. ..++|+.|++++| .++.+|..+..+++|++|++++ ++++.+|.. ..+++|++|+++++|
T Consensus 443 ~~~~~---------l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 443 SVFRC---------LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp GGGSS---------CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred chhhh---------hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 2221 1379999999995 7899998777999999999999 789999985 347899999999876
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=234.40 Aligned_cols=416 Identities=21% Similarity=0.215 Sum_probs=213.3
Q ss_pred cCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCCCCCC---ccEEeecCCcchhhhhcCCCCc
Q 007138 19 PFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPEHLPA---LEMLVIEGCEELLVSVASLPAL 95 (616)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~---L~~L~l~~c~~l~~~~~~~~~L 95 (616)
+..+|++|.+.+. .+.+ ++.. ++.+++|++|++++|. +.+.+|..+.+ |+.+++.+|.. ..+
T Consensus 9 ~~~~L~~L~l~~n-~l~~-iP~~----i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~--------~~l 73 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTE-MPVE----AENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLD--------RQA 73 (454)
T ss_dssp -------------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHH--------HTC
T ss_pred ccccchhhhcccC-chhh-CChh----HhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhc--------cCC
Confidence 4678899998886 4543 3423 3889999999999985 66678875544 44555666632 567
Q ss_pred cEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEe
Q 007138 96 CKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLT 175 (616)
Q Consensus 96 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 175 (616)
++|++++|....++ ...++|+.|.+.+..... .+ ...++|++|+
T Consensus 74 ~~L~l~~~~l~~lp----------------------------~~~~~L~~L~l~~n~l~~----lp----~~~~~L~~L~ 117 (454)
T 1jl5_A 74 HELELNNLGLSSLP----------------------------ELPPHLESLVASCNSLTE----LP----ELPQSLKSLL 117 (454)
T ss_dssp SEEECTTSCCSCCC----------------------------SCCTTCSEEECCSSCCSS----CC----CCCTTCCEEE
T ss_pred CEEEecCCccccCC----------------------------CCcCCCCEEEccCCcCCc----cc----cccCCCcEEE
Confidence 88888888754433 223677888776654332 12 2347899999
Q ss_pred eccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEE
Q 007138 176 ITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIW 255 (616)
Q Consensus 176 l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 255 (616)
++++. ++.++. .+++|++|++++|.. +.+| .++.+++|++|++++| .++.+|.. ..+|++|+
T Consensus 118 l~~n~-l~~l~~------------~~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~ 179 (454)
T 1jl5_A 118 VDNNN-LKALSD------------LPPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIA 179 (454)
T ss_dssp CCSSC-CSCCCS------------CCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEE
T ss_pred CCCCc-cCcccC------------CCCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEE
Confidence 98864 444332 226899999999876 5677 5888999999999988 46667643 46899999
Q ss_pred ccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEe
Q 007138 256 ISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLD 335 (616)
Q Consensus 256 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~ 335 (616)
+++|. ++.++.. ..+++|++|+++++. +..++. .+++|+.|++++| .++.+ +. +.. +++|++|+
T Consensus 180 L~~n~-l~~l~~~---~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L~l~~n-~l~~l--p~-~~~-----l~~L~~L~ 243 (454)
T 1jl5_A 180 AGNNQ-LEELPEL---QNLPFLTAIYADNNS-LKKLPD--LPLSLESIVAGNN-ILEEL--PE-LQN-----LPFLTTIY 243 (454)
T ss_dssp CCSSC-CSSCCCC---TTCTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSS-CCSSC--CC-CTT-----CTTCCEEE
T ss_pred CcCCc-CCcCccc---cCCCCCCEEECCCCc-CCcCCC--CcCcccEEECcCC-cCCcc--cc-cCC-----CCCCCEEE
Confidence 99886 5666643 667889999988764 554442 3458888888887 45554 43 333 67788888
Q ss_pred ccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCC
Q 007138 336 ISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL 415 (616)
Q Consensus 336 l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L 415 (616)
++++ .++. +|... ++|++|++++|...+ +|.. +++|+.|++++|. ++.++. ..++|
T Consensus 244 l~~N-~l~~------l~~~~---------~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~-l~~l~~---~~~~L 299 (454)
T 1jl5_A 244 ADNN-LLKT------LPDLP---------PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENI-FSGLSE---LPPNL 299 (454)
T ss_dssp CCSS-CCSS------CCSCC---------TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC-CSEESC---CCTTC
T ss_pred CCCC-cCCc------ccccc---------cccCEEECCCCcccc-cCcc---cCcCCEEECcCCc-cCcccC---cCCcC
Confidence 8873 3332 11111 677788887775433 4432 3577888887765 333332 12577
Q ss_pred cEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCc
Q 007138 416 QGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495 (616)
Q Consensus 416 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 495 (616)
+.|++++| .+..++.. . ++|++|++++ +.+++. |. .+++|+.|++++|.... .+. .+++|
T Consensus 300 ~~L~l~~N-~l~~i~~~-~--~~L~~L~Ls~-N~l~~l-p~------~~~~L~~L~L~~N~l~~-----lp~---~l~~L 359 (454)
T 1jl5_A 300 YYLNASSN-EIRSLCDL-P--PSLEELNVSN-NKLIEL-PA------LPPRLERLIASFNHLAE-----VPE---LPQNL 359 (454)
T ss_dssp CEEECCSS-CCSEECCC-C--TTCCEEECCS-SCCSCC-CC------CCTTCCEEECCSSCCSC-----CCC---CCTTC
T ss_pred CEEECcCC-cCCcccCC-c--CcCCEEECCC-Cccccc-cc------cCCcCCEEECCCCcccc-----ccc---hhhhc
Confidence 77777776 44444421 1 2677777777 455542 21 13455555555553210 000 24556
Q ss_pred cEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCCcCCcc
Q 007138 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLL 575 (616)
Q Consensus 496 ~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~ 575 (616)
++|++++| .+..++. .+..+..|.. +.....+|. .+++|++|++++ +.++.++. .+++++
T Consensus 360 ~~L~L~~N--~l~~l~~----------ip~~l~~L~~--n~~~~~i~~---~~~~L~~L~ls~-N~l~~~~~--iP~sl~ 419 (454)
T 1jl5_A 360 KQLHVEYN--PLREFPD----------IPESVEDLRM--NSHLAEVPE---LPQNLKQLHVET-NPLREFPD--IPESVE 419 (454)
T ss_dssp CEEECCSS--CCSSCCC----------CCTTCCEEEC--CC---------------------------------------
T ss_pred cEEECCCC--CCCcCCC----------ChHHHHhhhh--ccccccccc---ccCcCCEEECCC-CcCCcccc--chhhHh
Confidence 66666554 3333322 1222333322 223333442 238899999999 67776544 566788
Q ss_pred eEEEcCCc
Q 007138 576 QLQIYCCP 583 (616)
Q Consensus 576 ~L~i~~c~ 583 (616)
.|.+.+|.
T Consensus 420 ~L~~~~~~ 427 (454)
T 1jl5_A 420 DLRMNSER 427 (454)
T ss_dssp --------
T ss_pred heeCcCcc
Confidence 88888764
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-24 Score=225.01 Aligned_cols=348 Identities=16% Similarity=0.188 Sum_probs=252.8
Q ss_pred CCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccc
Q 007138 140 IPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP 219 (616)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 219 (616)
+++++.|.+.++..... + .+..+++|++|++++|. ++.+++ +..+ ++|++|++++|.. ..++
T Consensus 45 l~~l~~L~l~~~~i~~l----~--~~~~l~~L~~L~Ls~n~-l~~~~~------~~~l----~~L~~L~l~~n~l-~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI----D--GVEYLNNLTQINFSNNQ-LTDITP------LKNL----TKLVDILMNNNQI-ADIT 106 (466)
T ss_dssp HHTCCEEECCSSCCCCC----T--TGGGCTTCCEEECCSSC-CCCCGG------GTTC----TTCCEEECCSSCC-CCCG
T ss_pred hccccEEecCCCCCccC----c--chhhhcCCCEEECCCCc-cCCchh------hhcc----ccCCEEECCCCcc-ccCh
Confidence 56888888877654332 2 26789999999999875 555432 4445 8999999999876 5555
Q ss_pred cccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCC
Q 007138 220 QSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPS 299 (616)
Q Consensus 220 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 299 (616)
. ++.+++|++|++++| .++.++.+..+++|++|++++|. +..++.. ..+++|++|++++ .+..+.....+++
T Consensus 107 ~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~--~~~~~~~~~~l~~ 178 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGN--QVTDLKPLANLTT 178 (466)
T ss_dssp G-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEE--SCCCCGGGTTCTT
T ss_pred h-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCC--cccCchhhccCCC
Confidence 5 889999999999998 57777777789999999999886 6666543 6778999999874 3445555677789
Q ss_pred ccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch
Q 007138 300 LKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379 (616)
Q Consensus 300 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 379 (616)
|+.|+++++. ++.+ +. +. .+++|++|+++++. +..+.+ +..+ ++|+.|++++|...+
T Consensus 179 L~~L~l~~n~-l~~~--~~-l~-----~l~~L~~L~l~~n~-l~~~~~-------~~~l------~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 179 LERLDISSNK-VSDI--SV-LA-----KLTNLESLIATNNQ-ISDITP-------LGIL------TNLDELSLNGNQLKD 235 (466)
T ss_dssp CCEEECCSSC-CCCC--GG-GG-----GCTTCSEEECCSSC-CCCCGG-------GGGC------TTCCEEECCSSCCCC
T ss_pred CCEEECcCCc-CCCC--hh-hc-----cCCCCCEEEecCCc-cccccc-------cccc------CCCCEEECCCCCccc
Confidence 9999999884 5554 22 22 37889999999853 443222 2222 889999999886543
Q ss_pred hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHh
Q 007138 380 SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMI 459 (616)
Q Consensus 380 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 459 (616)
++ .+..+++|+.|++++|... .++. +..+++|+.|++++| .+..++. ...+++|++|++++| .+++..+
T Consensus 236 -~~-~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---- 304 (466)
T 1o6v_A 236 -IG-TLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISP---- 304 (466)
T ss_dssp -CG-GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG----
T ss_pred -ch-hhhcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchh----
Confidence 33 4677889999999998744 3433 788899999999988 4444544 445568999999985 5666533
Q ss_pred hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 460 ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 460 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
+..+++|+.|++++|.... ...+..+++|+.|++++| .+..++... .+++|+.|++++|+ +.
T Consensus 305 -~~~l~~L~~L~L~~n~l~~------~~~~~~l~~L~~L~l~~n--~l~~~~~l~--------~l~~L~~L~l~~n~-l~ 366 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISD------ISPVSSLTKLQRLFFYNN--KVSDVSSLA--------NLTNINWLSAGHNQ-IS 366 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSC------CGGGGGCTTCCEEECCSS--CCCCCGGGT--------TCTTCCEEECCSSC-CC
T ss_pred -hcCCCCCCEEECcCCcCCC------chhhccCccCCEeECCCC--ccCCchhhc--------cCCCCCEEeCCCCc-cC
Confidence 6788899999999886321 123678899999999986 666664332 68899999999864 55
Q ss_pred ccccccccCccccEEEecCCCCCcccCC
Q 007138 540 RLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 540 ~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+++ +..+++|+.|++++ +.+..+|.
T Consensus 367 ~~~~-~~~l~~L~~L~l~~-n~~~~~p~ 392 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLND-QAWTNAPV 392 (466)
T ss_dssp BCGG-GTTCTTCCEEECCC-EEEECCCB
T ss_pred ccch-hhcCCCCCEEeccC-CcccCCch
Confidence 5553 78899999999998 55666554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=225.27 Aligned_cols=345 Identities=19% Similarity=0.194 Sum_probs=264.3
Q ss_pred hcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCC
Q 007138 166 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV 245 (616)
Q Consensus 166 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 245 (616)
..+++++.|++.++. ++.++. +..+ ++|++|++++|.. +.++. ++.+++|++|++++| .+..++.+
T Consensus 43 ~~l~~l~~L~l~~~~-i~~l~~------~~~l----~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRLG-IKSIDG------VEYL----NNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNN-QIADITPL 108 (466)
T ss_dssp HHHHTCCEEECCSSC-CCCCTT------GGGC----TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hHhccccEEecCCCC-CccCcc------hhhh----cCCCEEECCCCcc-CCchh-hhccccCCEEECCCC-ccccChhh
Confidence 346789999998875 555432 4444 8999999999876 66666 899999999999998 46777667
Q ss_pred CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccccccccc
Q 007138 246 ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRR 325 (616)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 325 (616)
..+++|++|++++|. +..++.. ..+++|++|+++++. +..++....+++|+.|++.+. +..+ +. +.
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~--~~-~~---- 174 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTDL--KP-LA---- 174 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCCC--GG-GT----
T ss_pred cCCCCCCEEECCCCC-CCCChHH---cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc--ccCc--hh-hc----
Confidence 889999999999986 6666653 778999999999874 556666677889999999753 3333 22 33
Q ss_pred ccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccc
Q 007138 326 YTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405 (616)
Q Consensus 326 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 405 (616)
.+++|++|+++++. ++.+ ..+..+ ++|++|++++|...+..+ +..+++|+.|++++|. ++.+
T Consensus 175 -~l~~L~~L~l~~n~-l~~~-------~~l~~l------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~ 236 (466)
T 1o6v_A 175 -NLTTLERLDISSNK-VSDI-------SVLAKL------TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDI 236 (466)
T ss_dssp -TCTTCCEEECCSSC-CCCC-------GGGGGC------TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC
T ss_pred -cCCCCCEEECcCCc-CCCC-------hhhccC------CCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccc
Confidence 37899999999954 4431 113333 899999999997665444 6678899999999986 4445
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhc
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 485 (616)
+ .+..+++|+.|++++|. +..++. ...+++|++|++++| .+++..+ +..+++|+.|++++|....
T Consensus 237 ~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~L~~n~l~~------ 301 (466)
T 1o6v_A 237 G-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGAN-QISNISP-----LAGLTALTNLELNENQLED------ 301 (466)
T ss_dssp G-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCCCCGG-----GTTCTTCSEEECCSSCCSC------
T ss_pred h-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCC-ccCcccc-----ccCCCccCeEEcCCCcccC------
Confidence 3 57889999999999984 444443 445669999999995 6766533 6789999999999986321
Q ss_pred CccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCccc
Q 007138 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 486 ~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l 565 (616)
...+..+++|+.|++++| .+..++... .+++|+.|++++| .+..++ .+..+++|++|++++ +.+..+
T Consensus 302 ~~~~~~l~~L~~L~L~~n--~l~~~~~~~--------~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~-n~l~~~ 368 (466)
T 1o6v_A 302 ISPISNLKNLTYLTLYFN--NISDISPVS--------SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGH-NQISDL 368 (466)
T ss_dssp CGGGGGCTTCSEEECCSS--CCSCCGGGG--------GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCS-SCCCBC
T ss_pred chhhcCCCCCCEEECcCC--cCCCchhhc--------cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCC-CccCcc
Confidence 223678999999999997 565555433 5899999999996 577775 788999999999999 566766
Q ss_pred CCCCCcCCcceEEEcCCch
Q 007138 566 PEKGLPSSLLQLQIYCCPL 584 (616)
Q Consensus 566 ~~~~~~~~L~~L~i~~c~~ 584 (616)
++...+++|++|++++|+.
T Consensus 369 ~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 369 TPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp GGGTTCTTCCEEECCCEEE
T ss_pred chhhcCCCCCEEeccCCcc
Confidence 6655688999999998853
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-24 Score=224.50 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred ccCCCCCCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCccee-ecccccccCCCCceeecCCCcceeecCCCCCCCC
Q 007138 66 TFPEHLPALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIP 141 (616)
Q Consensus 66 ~~p~~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 141 (616)
.+|...++|++|+++++.. + +..+..+++|++|++++|.... ++.. .-..++
T Consensus 24 ~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~------------------------~~~~l~ 79 (455)
T 3v47_A 24 QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN------------------------TFRGLS 79 (455)
T ss_dssp SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT------------------------TTTTCT
T ss_pred cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc------------------------cccccc
Confidence 5555335577777776652 1 3456677777777777775432 1100 002334
Q ss_pred CCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc-cchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 142 KLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
+|+.|.+.+..... ..+..++.+++|++|++++|. ++. .+.. ..+..+ ++|++|++++|......|.
T Consensus 80 ~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 80 SLIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCN-LDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp TCCEEECTTCTTCE----ECTTTTTTCTTCCEEECTTSC-CBTHHHHS---STTTTC----TTCCEEECCSSBCCSCCCC
T ss_pred cCCEEeCCCCccCc----cChhhccCcccCCEEeCCCCC-CCccccCc---ccccCc----ccCCEEECCCCccCccCcc
Confidence 44444444433221 233445566666666666654 222 1111 113333 5666666666655333343
Q ss_pred c-cCCCCCccEEEEcCCCCCCCCCC--CCC--CCCCcEEEccCCC
Q 007138 221 S-SLSLSSLREIEICKCSSLVSFPE--VAL--PSKLKNIWISTCD 260 (616)
Q Consensus 221 ~-~~~l~~L~~L~l~~~~~l~~~~~--~~~--~~~L~~L~l~~~~ 260 (616)
. ++.+++|++|++++|. ++.++. +.. ..+|+.++++++.
T Consensus 148 ~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp GGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred cccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCc
Confidence 3 5566666666666653 332221 111 2455555555554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=225.10 Aligned_cols=455 Identities=13% Similarity=0.091 Sum_probs=273.8
Q ss_pred cCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC---CCCCCccEEeecCCcc--h-hhhhcCC
Q 007138 19 PFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP---EHLPALEMLVIEGCEE--L-LVSVASL 92 (616)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~~~~L~~L~l~~c~~--l-~~~~~~~ 92 (616)
.+...+++++.++ .+.++. . ..+++|++|++++|. +.+..| ..+++|++|++++|.- + +..+..+
T Consensus 29 ~~~~~~~l~ls~~-~L~~ip-~------~~~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNR-NLTHVP-K------DLPPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTS-CCCSCC-T------TSCTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCC-CCccCC-C------CCCCCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 3555688998887 566543 2 235899999999996 553333 3578999999999972 2 3568889
Q ss_pred CCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCcc
Q 007138 93 PALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLK 172 (616)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 172 (616)
++|++|++++|....++. ..+++|+.|.+.+...... ..+..++.+++|+
T Consensus 100 ~~L~~L~Ls~N~l~~lp~---------------------------~~l~~L~~L~Ls~N~l~~l---~~p~~~~~l~~L~ 149 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISC---------------------------CPMASLRHLDLSFNDFDVL---PVCKEFGNLTKLT 149 (562)
T ss_dssp TTCCEEECTTSCCCEECS---------------------------CCCTTCSEEECCSSCCSBC---CCCGGGGGCTTCC
T ss_pred CCCCEEECCCCcCCccCc---------------------------cccccCCEEECCCCCcccc---CchHhhcccCccc
Confidence 999999999998765442 1478888888887654432 2235679999999
Q ss_pred EEeeccCCCccccchhhhhhHHhhhhhccCCC--cEEEccCCCC--CcccccccCCCC--CccEEEEcCCCCCCCCC--C
Q 007138 173 RLTITSCPKLQSLVAEEEKDQQQQLCELSCRL--EYLRLSNCEG--LVKLPQSSLSLS--SLREIEICKCSSLVSFP--E 244 (616)
Q Consensus 173 ~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~--~ 244 (616)
+|+++++. ++.. .+..+ ++| ++|++++|.. ....|..+..+. .+ .+++++|.....++ .
T Consensus 150 ~L~L~~n~-l~~~-------~~~~l----~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~ 216 (562)
T 3a79_B 150 FLGLSAAK-FRQL-------DLLPV----AHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMS 216 (562)
T ss_dssp EEEEECSB-CCTT-------TTGGG----TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEE
T ss_pred EEecCCCc-cccC-------chhhh----hhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhc
Confidence 99999865 4331 24445 556 9999999877 555666665544 22 45666665444444 2
Q ss_pred CCCCCCCcEEEccCCCCc-cccchhh-ccCCCCCccEEEeccCCC----CccccccCCCCCccEEEEecCCCCCcccccc
Q 007138 245 VALPSKLKNIWISTCDAL-KSLPEAW-MCDTNSSLEILSIHGCRS----LTYIAAVQLPPSLKQLSISDCDNIRTLTVEE 318 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l-~~~~~~~-~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 318 (616)
...+++|+.++++++... ..++... .....+.++.+++.++.. +..++.....++|+.|++++|.-...+ |.
T Consensus 217 ~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i--p~ 294 (562)
T 3a79_B 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI--DR 294 (562)
T ss_dssp ESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC--CC
T ss_pred ccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc--cc
Confidence 334778888888876411 1111100 003346666666665421 111111122347778887777422233 33
Q ss_pred cccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccc
Q 007138 319 GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIER 398 (616)
Q Consensus 319 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (616)
.+.......+..|+.+++.... + . +|...+...+.. .++++|++++|...... ....+++|+.|++++
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~-~-~-~p~~~~~~~~~~-------~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQV-F-L-FSKEALYSVFAE-------MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECC-C-S-SCHHHHHHHHHT-------CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred hhhhcccccchheehhhcccce-e-e-cChhhhhhhhcc-------CcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 3211000112333333333311 1 0 111101011111 45777777776543211 114566777777777
Q ss_pred ccccccccccccCCCCCcEEEeccCCCCcccC---CCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 399 CGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP---EGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 399 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
|...+.+|..+..+++|+.|++++| .+..++ .....+++|++|++++ +.+++.+|.. .+..+++|+.|++++|
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~--~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL-NSLNSHAYDR--TCAWAESILVLNLSSN 438 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT-SCCBSCCSSC--CCCCCTTCCEEECCSS
T ss_pred CccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC-CcCCCccChh--hhcCcccCCEEECCCC
Confidence 7655556666777777777777776 344332 2334455777777777 3555533321 3556677777777777
Q ss_pred hHHHHHhhhcCcccccc-CCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccE
Q 007138 476 MEIWKSMIERGRGFHRF-SSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTE 553 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~ 553 (616)
.... ..+..+ ++|+.|++++| .++.+|... ..+++|++|++++ +.++.+|.. +..+++|+.
T Consensus 439 ~l~~-------~~~~~l~~~L~~L~L~~N--~l~~ip~~~-------~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 439 MLTG-------SVFRCLPPKVKVLDLHNN--RIMSIPKDV-------THLQALQELNVAS-NQLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCCG-------GGGSSCCTTCSEEECCSS--CCCCCCTTT-------TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCC
T ss_pred CCCc-------chhhhhcCcCCEEECCCC--cCcccChhh-------cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCE
Confidence 5321 123344 68999999997 777777755 2689999999999 568889875 888999999
Q ss_pred EEecCCC
Q 007138 554 LVLVNCP 560 (616)
Q Consensus 554 L~l~~c~ 560 (616)
|++++++
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9999954
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=220.26 Aligned_cols=227 Identities=16% Similarity=0.153 Sum_probs=125.9
Q ss_pred HhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC
Q 007138 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 244 (616)
Q Consensus 165 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 244 (616)
++.+++|++|+++++. ++.++ +..+ ++|++|++++|..++.+ .++.+++|++|++++| .++.++
T Consensus 123 ~~~l~~L~~L~l~~N~-l~~l~-------l~~l----~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~- 186 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNT-LTEID-------VSHN----TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD- 186 (457)
T ss_dssp CTTCTTCCEEECTTSC-CSCCC-------CTTC----TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-
T ss_pred CCCCCcCCEEECCCCc-cceec-------cccC----CcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-
Confidence 3555666666666543 33321 2222 56666666666544444 2555666666666665 355554
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccc
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSR 324 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 324 (616)
+..+++|+.|++++|. ++.++ . ..+++|+.|+++++. ++.++ ...+++|+.|+++++ .++.+ + ..
T Consensus 187 l~~l~~L~~L~l~~N~-l~~~~-l---~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~~N-~l~~~--~--~~--- 251 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNN-ITKLD-L---NQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCSVN-PLTEL--D--VS--- 251 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC-C---TTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSS-CCSCC--C--CT---
T ss_pred cccCCCCCEEECcCCc-CCeec-c---ccCCCCCEEECcCCc-ccccC-ccccCCCCEEEeeCC-cCCCc--C--HH---
Confidence 4456666666666654 33332 1 344566666666542 44443 344456666666665 34333 1 11
Q ss_pred cccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccc
Q 007138 325 RYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKI 404 (616)
Q Consensus 325 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 404 (616)
.+++|+.|++++ .+|+.|++++|...+.+| ...+++|+.|++++|..++.
T Consensus 252 --~l~~L~~L~l~~--------------------------n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 252 --TLSKLTTLHCIQ--------------------------TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp --TCTTCCEEECTT--------------------------CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred --HCCCCCEEeccC--------------------------CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 144566666554 556666677776666555 35566777777777776666
Q ss_pred ccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 405 LPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+|. ..++|+.|++++| ++|++|++++ +++++. .++++++|+.|++++|
T Consensus 302 l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~-N~l~~l------~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 302 LDC---QAAGITELDLSQN-------------PKLVYLYLNN-TELTEL------DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEC---TTCCCSCCCCTTC-------------TTCCEEECTT-CCCSCC------CCTTCTTCSEEECCSS
T ss_pred ecc---CCCcceEechhhc-------------ccCCEEECCC-Cccccc------ccccCCcCcEEECCCC
Confidence 653 3445555555544 2677777777 456553 2455666666666655
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=219.59 Aligned_cols=361 Identities=18% Similarity=0.201 Sum_probs=194.9
Q ss_pred CCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc-ccccCCCCCccEEEEcCCCCCCCC-C-CC
Q 007138 169 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL-PQSSLSLSSLREIEICKCSSLVSF-P-EV 245 (616)
Q Consensus 169 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~-~~ 245 (616)
++|++|+++++. ++.+.+. .+..+ ++|++|++++|.....+ +..+..+++|++|++++|. ++.+ | .+
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~----~~~~l----~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNET----SFSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSC-CCEECTT----TTSSC----TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT
T ss_pred CccCEEEecCCc-cCcCChh----HhccC----ccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc
Confidence 788888888865 5554332 25555 78888888888765455 4467888888888888875 4443 3 45
Q ss_pred CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccc-cc--cCCCCCccEEEEecCCCCCcccccccccc
Q 007138 246 ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI-AA--VQLPPSLKQLSISDCDNIRTLTVEEGIQS 322 (616)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 322 (616)
..+++|++|++++|.....++.......+++|++|+++++. +..+ +. ...+++|+.|+++++. ++.+. +..+..
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~l~~ 176 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSIC-EEDLLN 176 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCC-TTTSGG
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccC-hhhhhc
Confidence 56888888888888633222322111456778888888764 3333 22 2455677777777763 33321 111111
Q ss_pred cccccCCCccEEeccCCCCcccccccCCCc----ccccccccCCCCCcccEEEecCCCCchhhhhhccC---CCCccEEE
Q 007138 323 SRRYTSCLLEHLDISSCPSLTCIFSKNELP----ATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDN---NTSLETIS 395 (616)
Q Consensus 323 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~----~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~ 395 (616)
....+++.|+++++. +.. .+...+. ..+..+ ++|++|++++|...+..+..+.. .++|+.|+
T Consensus 177 ---l~~~~L~~L~l~~n~-l~~-~~~~~~~~~~~~~~~~~------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 177 ---FQGKHFTLLRLSSIT-LQD-MNEYWLGWEKCGNPFKN------TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp ---GTTCEEEEEECTTCB-CTT-CSTTCTTHHHHCCTTTT------CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ---cccccccccccccCc-ccc-cchhhcccccccccccc------ceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 112456777776632 222 1111000 001111 56677777776665555544332 25667777
Q ss_pred cccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 396 IERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 396 l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+++|........ ...++.+ .........+++|+++++++ +.+++..|. .++++++|+.|++++|
T Consensus 246 l~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~---~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 246 LSNSYNMGSSFG-HTNFKDP-----------DNFTFKGLEASGVKTCDLSK-SKIFALLKS---VFSHFTDLEQLTLAQN 309 (455)
T ss_dssp CTTCTTTSCCTT-CCSSCCC-----------CTTTTGGGTTSCCCEEECCS-SCCCEECTT---TTTTCTTCCEEECTTS
T ss_pred eccccccccccc-hhhhccC-----------cccccccccccCceEEEecC-ccccccchh---hcccCCCCCEEECCCC
Confidence 666543322100 0000000 00000001112455555555 234443332 3344455555555554
Q ss_pred hHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccc-ccccccCccccEE
Q 007138 476 MEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL-SSSIVDLQNLTEL 554 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L 554 (616)
... ...+..+..+++|++|++++| .+..++... +..+++|++|++++| .+..+ |..+..+++|++|
T Consensus 310 ~l~----~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 310 EIN----KIDDNAFWGLTHLLKLNLSQN--FLGSIDSRM------FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp CCC----EECTTTTTTCTTCCEEECCSS--CCCEECGGG------GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred ccc----ccChhHhcCcccCCEEECCCC--ccCCcChhH------hcCcccCCEEECCCC-cccccChhhccccccccEE
Confidence 321 111224566777777777775 444443321 225677888888774 45554 4467777888888
Q ss_pred EecCCCCCcccCCCC--CcCCcceEEEcCCc
Q 007138 555 VLVNCPKLKYFPEKG--LPSSLLQLQIYCCP 583 (616)
Q Consensus 555 ~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 583 (616)
++++ ++++.++... .+++|++|++++++
T Consensus 377 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 377 ALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 8887 6777777643 36778888887654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=209.04 Aligned_cols=304 Identities=15% Similarity=0.184 Sum_probs=146.3
Q ss_pred hcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCC
Q 007138 166 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV 245 (616)
Q Consensus 166 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 245 (616)
..+++|++|+++++. +..++. +..+ ++|++|++++|.. +.++. +..+++|++|++++| .++.++.+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~~------~~~~----~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQG------IEYL----TNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCTT------GGGC----TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCCc-cccchh------hhhc----CCccEEEccCCcc-ccchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 455666666666543 333211 2233 5666666666543 44443 555666666666665 34555545
Q ss_pred CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccccccccc
Q 007138 246 ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRR 325 (616)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 325 (616)
..+++|++|++++|. +..++.. ..+++|+.|++++|.....++....++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~l~--------------------------- 155 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMT--------------------------- 155 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEECTTCTTCCCCGGGTTCT---------------------------
T ss_pred cCCCcCCEEECcCCc-ccCchhh---ccCCceeEEECCCCCCcccccchhhCC---------------------------
Confidence 555666666665554 3333331 344455555555444333333333333
Q ss_pred ccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccc
Q 007138 326 YTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405 (616)
Q Consensus 326 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 405 (616)
+|++|+++++. +..+.+ +..+ ++|++|++++|...+ ++. +..+++|+.+++++|.. ..+
T Consensus 156 ----~L~~L~l~~~~-~~~~~~-------~~~l------~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l-~~~ 214 (347)
T 4fmz_A 156 ----GLNYLTVTESK-VKDVTP-------IANL------TDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQI-TDI 214 (347)
T ss_dssp ----TCCEEECCSSC-CCCCGG-------GGGC------TTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC-CCC
T ss_pred ----CCcEEEecCCC-cCCchh-------hccC------CCCCEEEccCCcccc-ccc-ccCCCccceeecccCCC-CCC
Confidence 44444444422 111000 1111 445555555443222 222 34445555555555432 222
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhc
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 485 (616)
+. +..+++|++|++++| .+..++. ...+++|++|++++| .+++.
T Consensus 215 ~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~-------------------------------- 258 (347)
T 4fmz_A 215 TP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTN-QISDI-------------------------------- 258 (347)
T ss_dssp GG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCC--------------------------------
T ss_pred ch-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCC-ccCCC--------------------------------
Confidence 21 445555555555555 2333332 223345555555553 33321
Q ss_pred CccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCccc
Q 007138 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 486 ~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l 565 (616)
..+..+++|+.|++++| .+..++... .+++|+.|++++|+-....+..+..+++|++|++++| .++.+
T Consensus 259 -~~~~~l~~L~~L~l~~n--~l~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~ 326 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSN--QISDISVLN--------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDI 326 (347)
T ss_dssp -GGGTTCTTCCEEECCSS--CCCCCGGGG--------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCC
T ss_pred -hhHhcCCCcCEEEccCC--ccCCChhhc--------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccc
Confidence 13345566666666664 444443322 4566677777665432233335566677777777763 45555
Q ss_pred CCCCCcCCcceEEEcCCc
Q 007138 566 PEKGLPSSLLQLQIYCCP 583 (616)
Q Consensus 566 ~~~~~~~~L~~L~i~~c~ 583 (616)
++...+++|++|++++|+
T Consensus 327 ~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 327 RPLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGGCTTCSEESSSCC-
T ss_pred cChhhhhccceeehhhhc
Confidence 543345667777776665
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=215.01 Aligned_cols=330 Identities=24% Similarity=0.241 Sum_probs=210.3
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCc-------------ceEeeccCCCcccccCCCCCCccEEeecCC
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKL-------------RELHIISCSKLQGTFPEHLPALEMLVIEGC 82 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~c~~l~~~~p~~~~~L~~L~l~~c 82 (616)
++..+++|++|++.++. +.+..+... +.+.+| ++|++++|. ++ .+|...++|+.|+++++
T Consensus 29 ~i~~L~~L~~L~l~~n~-~~~~~p~~~----~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~-~lp~~~~~L~~L~l~~n 101 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSE-WERNAPPGN----GEQREMAVSRLRDCLDRQAHELELNNLG-LS-SLPELPPHLESLVASCN 101 (454)
T ss_dssp -----CCHHHHHHHHHH-HHHTSCTTS----CCCHHHHHHHHHHHHHHTCSEEECTTSC-CS-CCCSCCTTCSEEECCSS
T ss_pred hHhcccchhhhhccCCc-ccccCCccc----ccchhcchhhhhhhhccCCCEEEecCCc-cc-cCCCCcCCCCEEEccCC
Confidence 46778889999999873 454444333 666654 888888885 55 56666678888888877
Q ss_pred cchhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccch
Q 007138 83 EELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHN 162 (616)
Q Consensus 83 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 162 (616)
..-. .-...++|++|++++|....++ ...++|+.|.+.++.-.. .+
T Consensus 102 ~l~~-lp~~~~~L~~L~l~~n~l~~l~----------------------------~~~~~L~~L~L~~n~l~~----lp- 147 (454)
T 1jl5_A 102 SLTE-LPELPQSLKSLLVDNNNLKALS----------------------------DLPPLLEYLGVSNNQLEK----LP- 147 (454)
T ss_dssp CCSS-CCCCCTTCCEEECCSSCCSCCC----------------------------SCCTTCCEEECCSSCCSS----CC-
T ss_pred cCCc-cccccCCCcEEECCCCccCccc----------------------------CCCCCCCEEECcCCCCCC----Cc-
Confidence 5221 1123478888888888654422 122678888887764432 23
Q ss_pred hHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCC
Q 007138 163 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSF 242 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 242 (616)
.++.+++|++|+++++. ++.++.. +.+|++|++++|.. +.+| .++.+++|++|++++| .++.+
T Consensus 148 -~~~~l~~L~~L~l~~N~-l~~lp~~------------~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N-~l~~l 210 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNS-LKKLPDL------------PPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNN-SLKKL 210 (454)
T ss_dssp -CCTTCTTCCEEECCSSC-CSCCCCC------------CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-CCSSC
T ss_pred -ccCCCCCCCEEECCCCc-CcccCCC------------cccccEEECcCCcC-CcCc-cccCCCCCCEEECCCC-cCCcC
Confidence 36888899999998874 5554432 25889999998865 5577 5888999999999888 46666
Q ss_pred CCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccc
Q 007138 243 PEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQS 322 (616)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 322 (616)
|.. +++|++|++++|. +..++.. ..+++|++|+++++. ++.++. .+++|+.|+++++ .++.+ +..
T Consensus 211 ~~~--~~~L~~L~l~~n~-l~~lp~~---~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L~l~~N-~l~~l--~~~--- 275 (454)
T 1jl5_A 211 PDL--PLSLESIVAGNNI-LEELPEL---QNLPFLTTIYADNNL-LKTLPD--LPPSLEALNVRDN-YLTDL--PEL--- 275 (454)
T ss_dssp CCC--CTTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSSC-CSSCCS--CCTTCCEEECCSS-CCSCC--CCC---
T ss_pred CCC--cCcccEEECcCCc-CCccccc---CCCCCCCEEECCCCc-CCcccc--cccccCEEECCCC-ccccc--Ccc---
Confidence 643 4688999998886 5566643 567888888888763 555543 3468888888877 45444 332
Q ss_pred cccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccc
Q 007138 323 SRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNL 402 (616)
Q Consensus 323 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 402 (616)
.++|++|+++++ .++. .+ .+|++|++|++++|...+ ++. -.++|+.|++++|. +
T Consensus 276 -----~~~L~~L~ls~N-~l~~-l~--------------~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~-l 329 (454)
T 1jl5_A 276 -----PQSLTFLDVSEN-IFSG-LS--------------ELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNK-L 329 (454)
T ss_dssp -----CTTCCEEECCSS-CCSE-ES--------------CCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSC-C
T ss_pred -----cCcCCEEECcCC-ccCc-cc--------------CcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCc-c
Confidence 246788888773 2332 11 011567777777764432 221 11477777777765 3
Q ss_pred ccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 403 KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 403 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
..+|.. +++|+.|++++| .+..+|. . +++|++|++++ +.+++
T Consensus 330 ~~lp~~---~~~L~~L~L~~N-~l~~lp~-~--l~~L~~L~L~~-N~l~~ 371 (454)
T 1jl5_A 330 IELPAL---PPRLERLIASFN-HLAEVPE-L--PQNLKQLHVEY-NPLRE 371 (454)
T ss_dssp SCCCCC---CTTCCEEECCSS-CCSCCCC-C--CTTCCEEECCS-SCCSS
T ss_pred cccccc---CCcCCEEECCCC-ccccccc-h--hhhccEEECCC-CCCCc
Confidence 345542 467777777776 4556665 2 34777777776 45554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=204.50 Aligned_cols=302 Identities=16% Similarity=0.230 Sum_probs=187.2
Q ss_pred CCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 138 PRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
..+++|+.|.+.+...... ..+..+++|++|++++|. ++.++. +..+ ++|++|++++|.. +.
T Consensus 41 ~~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~-i~~~~~------~~~l----~~L~~L~L~~n~i-~~ 102 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQ-ITDISP------LSNL----VKLTNLYIGTNKI-TD 102 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSC-CCCCGG------GTTC----TTCCEEECCSSCC-CC
T ss_pred hhcccccEEEEeCCccccc------hhhhhcCCccEEEccCCc-cccchh------hhcC----CcCCEEEccCCcc-cC
Confidence 3578899999988655432 236889999999999974 665532 4444 8999999999865 56
Q ss_pred cccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCC
Q 007138 218 LPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP 297 (616)
Q Consensus 218 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 297 (616)
++ .+..+++|++|++++| .++.++....+++|++|++++|.....++.. ..+++|++|+++++. +..++....+
T Consensus 103 ~~-~~~~l~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~l~~L~~L~l~~~~-~~~~~~~~~l 176 (347)
T 4fmz_A 103 IS-ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESK-VKDVTPIANL 176 (347)
T ss_dssp CG-GGTTCTTCSEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGG---TTCTTCCEEECCSSC-CCCCGGGGGC
T ss_pred ch-HHcCCCcCCEEECcCC-cccCchhhccCCceeEEECCCCCCcccccch---hhCCCCcEEEecCCC-cCCchhhccC
Confidence 65 5899999999999998 5777777788999999999999878777764 778999999999874 4444434445
Q ss_pred CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCC
Q 007138 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 377 (616)
Q Consensus 298 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 377 (616)
++|+.|++++| .++.+ +. +.. + ++|+.+++++|..
T Consensus 177 ~~L~~L~l~~n-~l~~~--~~-~~~-----l------------------------------------~~L~~L~l~~n~l 211 (347)
T 4fmz_A 177 TDLYSLSLNYN-QIEDI--SP-LAS-----L------------------------------------TSLHYFTAYVNQI 211 (347)
T ss_dssp TTCSEEECTTS-CCCCC--GG-GGG-----C------------------------------------TTCCEEECCSSCC
T ss_pred CCCCEEEccCC-ccccc--cc-ccC-----C------------------------------------CccceeecccCCC
Confidence 56666666555 23332 11 111 3 4455555555433
Q ss_pred chhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhh
Q 007138 378 LESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRY 457 (616)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 457 (616)
.+..+ +..+++|+.|++++|. +..++. +..+++|++|++++| .+..++ ....+++|++|++++| .+++. +
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~-~-- 281 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDI-S-- 281 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCC-G--
T ss_pred CCCch--hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCC-h--
Confidence 32211 4455666666666654 333333 566666777777666 333332 2233446777777664 44332 1
Q ss_pred HhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcc
Q 007138 458 MIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN 537 (616)
Q Consensus 458 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 537 (616)
.+..+++|+.|++++| .+...+... +..+++|++|++++|+
T Consensus 282 ------------------------------~~~~l~~L~~L~L~~n--~l~~~~~~~------l~~l~~L~~L~L~~n~- 322 (347)
T 4fmz_A 282 ------------------------------VLNNLSQLNSLFLNNN--QLGNEDMEV------IGGLTNLTTLFLSQNH- 322 (347)
T ss_dssp ------------------------------GGGGCTTCSEEECCSS--CCCGGGHHH------HHTCTTCSEEECCSSS-
T ss_pred ------------------------------hhcCCCCCCEEECcCC--cCCCcChhH------hhccccCCEEEccCCc-
Confidence 2234455555555553 232222111 0135566666666643
Q ss_pred ccccccccccCccccEEEecC
Q 007138 538 LERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 538 l~~i~~~~~~~~~L~~L~l~~ 558 (616)
++.+++ +..+++|++|++++
T Consensus 323 l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 323 ITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp CCCCGG-GGGCTTCSEESSSC
T ss_pred cccccC-hhhhhccceeehhh
Confidence 444443 55566666666666
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=221.34 Aligned_cols=225 Identities=19% Similarity=0.123 Sum_probs=155.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccc--cccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLK--ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 442 (616)
..++.+.+..+..... .....+++|+.+++++|.... ..+.....+.+|+.+++..+. ...++.....+++|+.+
T Consensus 349 ~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHL 425 (635)
T ss_dssp TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEE
T ss_pred hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccch
Confidence 6677777777654332 234567899999999876432 234455678899999998873 44555556667799999
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccc-ccccccccCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS-FPLEDKRLGTAL 521 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~-l~~~~~~~~~~~ 521 (616)
++..++......+ ..+..+.+++.++++.|... ...+..+..+++|+.|++++|. .... .+.. +
T Consensus 426 ~l~~~~~~~~~~~---~~~~~l~~l~~l~ls~n~l~----~~~~~~~~~~~~L~~L~Ls~N~-~~~~~~~~~-------~ 490 (635)
T 4g8a_A 426 DFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-------F 490 (635)
T ss_dssp ECTTSEEESTTSS---CTTTTCTTCCEEECTTSCCE----ECCTTTTTTCTTCCEEECTTCE-EGGGEECSC-------C
T ss_pred hhhhccccccccc---cccccccccccccccccccc----cccccccccchhhhhhhhhhcc-cccccCchh-------h
Confidence 9998654433222 25678899999999988632 1223356778999999999962 2332 3332 3
Q ss_pred CCCCccceEecccCccccccc-cccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcCCchhhhhhhcCCCCccc
Q 007138 522 PLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCCPLIAEKCRKDGGQYWD 598 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~~l~~~~~~~~~~~w~ 598 (616)
..+++|++|++++| .++.++ ..+..+++|++|++++ ++++.++... .+++|++|+++++....- ......
T Consensus 491 ~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~ 563 (635)
T 4g8a_A 491 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-----KKQELQ 563 (635)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCCBC-----CSSCTT
T ss_pred hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCCCC-----CHHHHH
Confidence 47899999999995 577764 4788999999999999 7899988753 378999999999863221 111122
Q ss_pred cc-CCccEEEEcCeecc
Q 007138 599 LL-THIPHVVIDDKRVF 614 (616)
Q Consensus 599 ~i-~~i~~~~~~~~~~~ 614 (616)
.+ ..+.++.+.++.+.
T Consensus 564 ~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCTTCCEEECTTCCBC
T ss_pred hhhCcCCEEEeeCCCCc
Confidence 23 56777887776553
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=200.93 Aligned_cols=265 Identities=20% Similarity=0.206 Sum_probs=177.9
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 218 (616)
.+.+++.|.+.+.... ..+...+..+++|++|+++++. ++.++.. .+..+ ++|++|++++|......
T Consensus 43 ~l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQ-IEEIDTY----AFAYA----HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCchh----hCChhHhcccccCcEEECCCCc-ccccChh----hccCC----CCcCEEECCCCCCCcCC
Confidence 4578888888775433 3567778899999999999875 6655543 25555 88999999998864444
Q ss_pred ccccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCC
Q 007138 219 PQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 296 (616)
Q Consensus 219 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 296 (616)
|..++.+++|++|++++| .++.+|. +..+++|++|++++|. +..++.... ..+++|++|+++++. ++.++ ...
T Consensus 110 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC-GGG
T ss_pred HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc-ccc
Confidence 566889999999999998 5777774 3568999999999887 444433211 456888999888764 44443 344
Q ss_pred CCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCC
Q 007138 297 PPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 376 (616)
Q Consensus 297 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 376 (616)
+++|+.++++++ .++.+.. .++|++|+++++ .+.. .+.... ++|+.|++++|.
T Consensus 185 l~~L~~L~l~~n-~l~~~~~-----------~~~L~~L~l~~n-~l~~-~~~~~~-------------~~L~~L~l~~n~ 237 (390)
T 3o6n_A 185 IPSLFHANVSYN-LLSTLAI-----------PIAVEELDASHN-SINV-VRGPVN-------------VELTILKLQHNN 237 (390)
T ss_dssp CTTCSEEECCSS-CCSEEEC-----------CSSCSEEECCSS-CCCE-EECCCC-------------SSCCEEECCSSC
T ss_pred ccccceeecccc-cccccCC-----------CCcceEEECCCC-eeee-cccccc-------------ccccEEECCCCC
Confidence 568888888776 3443311 245778888773 3333 221111 567777777775
Q ss_pred CchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 377 KLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 377 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
..+. ..+..+++|+.|++++|...+..|..+..+++|++|++++| .+..++.....+++|++|++++| .+++
T Consensus 238 l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 238 LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred Cccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-ccee
Confidence 5432 35666777777777777655555666777777777777776 45556555555567777777774 4544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=202.91 Aligned_cols=319 Identities=18% Similarity=0.176 Sum_probs=207.6
Q ss_pred HHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC
Q 007138 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP 243 (616)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 243 (616)
.++.+++|++|+++++. ++.++ .+..+ ++|++|++++|.. +.+| ++.+++|++|++++|. ++.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~-l~~~~------~l~~l----~~L~~L~Ls~n~l-~~~~--~~~l~~L~~L~Ls~N~-l~~~~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-ITDMT------GIEKL----TGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNK-LTNLD 101 (457)
T ss_dssp EHHHHTTCCEEECCSSC-CCCCT------TGGGC----TTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSC-CSCCC
T ss_pred ChhHcCCCCEEEccCCC-cccCh------hhccc----CCCCEEEccCCcC-CeEc--cccCCCCCEEECcCCC-Cceee
Confidence 35778999999998864 55543 24555 8899999999875 5565 7889999999999884 66665
Q ss_pred CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccccccc
Q 007138 244 EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSS 323 (616)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 323 (616)
+..+++|++|++++|. +..++ . ..+++|++|+++++. ++.++ ...+++|+.|++++|..++.+. +.
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~-~---~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~----~~-- 167 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD-V---SQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLD----VT-- 167 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC-C---TTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCC----CT--
T ss_pred -cCCCCcCCEEECCCCc-CCeec-C---CCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccc----cc--
Confidence 6678899999998886 55554 1 566888888888764 55543 4556788888888876555541 12
Q ss_pred ccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccc
Q 007138 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLK 403 (616)
Q Consensus 324 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 403 (616)
.+++|++|+++++ .++. .+ +..+ ++|+.|++++|...+ + .+..+++|+.|++++|. ++
T Consensus 168 ---~l~~L~~L~ls~n-~l~~-l~-------l~~l------~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~-l~ 225 (457)
T 3bz5_A 168 ---PQTQLTTLDCSFN-KITE-LD-------VSQN------KLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNK-LT 225 (457)
T ss_dssp ---TCTTCCEEECCSS-CCCC-CC-------CTTC------TTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSC-CS
T ss_pred ---cCCcCCEEECCCC-ccce-ec-------cccC------CCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCc-cc
Confidence 2567888888773 3443 12 1122 677788887775443 2 25667778888887765 34
Q ss_pred cccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhh
Q 007138 404 ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMI 483 (616)
Q Consensus 404 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 483 (616)
.+| +..+++|+.|++++| .+..++...+ ++|+.++++. + +|+.+++++|...
T Consensus 226 ~ip--~~~l~~L~~L~l~~N-~l~~~~~~~l--~~L~~L~l~~-n-----------------~L~~L~l~~n~~~----- 277 (457)
T 3bz5_A 226 EID--VTPLTQLTYFDCSVN-PLTELDVSTL--SKLTTLHCIQ-T-----------------DLLEIDLTHNTQL----- 277 (457)
T ss_dssp CCC--CTTCTTCSEEECCSS-CCSCCCCTTC--TTCCEEECTT-C-----------------CCSCCCCTTCTTC-----
T ss_pred ccC--ccccCCCCEEEeeCC-cCCCcCHHHC--CCCCEEeccC-C-----------------CCCEEECCCCccC-----
Confidence 455 667777888888777 4555553333 3666666554 2 3344555555311
Q ss_pred hcCccccccCCccEEEEecCCCccccccccccccCC-CCCCCCccceEecccCccccccccccccCccccEEEecCCCCC
Q 007138 484 ERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGT-ALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKL 562 (616)
Q Consensus 484 ~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l 562 (616)
..-.+..+++|+.|++++| ..+..++.....+.. .+...++|++|++++ +.++.++ +..+++|++|++++ +++
T Consensus 278 -~~~~~~~l~~L~~L~Ls~n-~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l 351 (457)
T 3bz5_A 278 -IYFQAEGCRKIKELDVTHN-TQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHI 351 (457)
T ss_dssp -CEEECTTCTTCCCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCC
T ss_pred -CcccccccccCCEEECCCC-cccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCC
Confidence 0112345677777777774 344444432221111 123568889999988 4577764 78899999999998 777
Q ss_pred cccCC
Q 007138 563 KYFPE 567 (616)
Q Consensus 563 ~~l~~ 567 (616)
+.++.
T Consensus 352 ~~l~~ 356 (457)
T 3bz5_A 352 QDFSS 356 (457)
T ss_dssp CBCTT
T ss_pred CCccc
Confidence 77654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-21 Score=198.45 Aligned_cols=306 Identities=18% Similarity=0.149 Sum_probs=176.5
Q ss_pred cCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC--
Q 007138 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-- 244 (616)
Q Consensus 167 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 244 (616)
.++++++|+++++. ++.++.. .+..+ ++|++|++++|......+..++.+++|++|++++|. ++.++.
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~----~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCceEEEecCCc-hhhCChh----Hhccc----ccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 46899999998865 6766654 35555 899999999987643344578899999999999984 666652
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccc
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSR 324 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 324 (616)
+..+++|++|++++|. +..++.... ..+++|++|+++++. +..++.. .+..
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~------------------------~~~~-- 163 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDD------------------------TFQA-- 163 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTT------------------------TTSS--
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCCc-cCccChh------------------------hccC--
Confidence 4568889999998886 555554321 345667777766653 2222211 1111
Q ss_pred cccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccc
Q 007138 325 RYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKI 404 (616)
Q Consensus 325 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 404 (616)
+++|++|+++++ .++. .+ +..+ ++|+.|+++++.... +...++|+.|++++|. +..
T Consensus 164 ---l~~L~~L~l~~n-~l~~-~~-------~~~l------~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~-l~~ 219 (390)
T 3o6n_A 164 ---TTSLQNLQLSSN-RLTH-VD-------LSLI------PSLFHANVSYNLLST-----LAIPIAVEELDASHNS-INV 219 (390)
T ss_dssp ---CTTCCEEECCSS-CCSB-CC-------GGGC------TTCSEEECCSSCCSE-----EECCSSCSEEECCSSC-CCE
T ss_pred ---CCCCCEEECCCC-cCCc-cc-------cccc------cccceeecccccccc-----cCCCCcceEEECCCCe-eee
Confidence 233444444431 1111 00 0000 334444444332111 1112244444444433 222
Q ss_pred ccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhh
Q 007138 405 LPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIE 484 (616)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 484 (616)
++. ...++|+.|++++| .+++. ..+..+++|+.|++++|... ..
T Consensus 220 ~~~--~~~~~L~~L~l~~n-------------------------~l~~~-----~~l~~l~~L~~L~Ls~n~l~----~~ 263 (390)
T 3o6n_A 220 VRG--PVNVELTILKLQHN-------------------------NLTDT-----AWLLNYPGLVEVDLSYNELE----KI 263 (390)
T ss_dssp EEC--CCCSSCCEEECCSS-------------------------CCCCC-----GGGGGCTTCSEEECCSSCCC----EE
T ss_pred ccc--cccccccEEECCCC-------------------------CCccc-----HHHcCCCCccEEECCCCcCC----Cc
Confidence 221 11234444444443 22221 12334444444444444311 01
Q ss_pred cCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcc
Q 007138 485 RGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 485 ~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~ 564 (616)
.+..+..+++|++|++++| .++.++... ..+++|++|++++| .+..+|..+..+++|++|++++ +.++.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n--~l~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~-N~i~~ 332 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVT 332 (390)
T ss_dssp ESGGGTTCSSCCEEECCSS--CCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCC
T ss_pred ChhHccccccCCEEECCCC--cCcccCccc-------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCC-Cccce
Confidence 1225567788888888886 566655543 25788999999985 6778887788889999999998 66777
Q ss_pred cCCCCCcCCcceEEEcCCc
Q 007138 565 FPEKGLPSSLLQLQIYCCP 583 (616)
Q Consensus 565 l~~~~~~~~L~~L~i~~c~ 583 (616)
++. ..+++|++|++++++
T Consensus 333 ~~~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 333 LKL-STHHTLKNLTLSHND 350 (390)
T ss_dssp CCC-CTTCCCSEEECCSSC
T ss_pred eCc-hhhccCCEEEcCCCC
Confidence 763 446789999999876
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=220.60 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=71.4
Q ss_pred hHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCC-
Q 007138 163 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVS- 241 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~- 241 (616)
.....+++|++|+++++. ++.+.... +..+...+++|++|++++|.. ..++..++.+++|++|+++++.....
T Consensus 186 ~~~~~~~~L~~L~L~~n~-~~~~~~~~----l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTE-FAKISPKD----LETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHCCCCCEEECTTCC-CSSCCHHH----HHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred HHHhcCCCccEEEeeccC-CCccCHHH----HHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccch
Confidence 445667777777776654 33222222 222222337778888877654 45666677777788887765422211
Q ss_pred ---CCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccc---cCCCCCccEEEEe
Q 007138 242 ---FPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA---VQLPPSLKQLSIS 306 (616)
Q Consensus 242 ---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~ 306 (616)
...+..+++|+.+++.++. ...++... ..+++|++|++++|. +..... ...+++|+.|+++
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 1133446677777776542 22233221 234566666666654 322211 1344566666665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-21 Score=202.78 Aligned_cols=179 Identities=21% Similarity=0.197 Sum_probs=122.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|..+..++...+...+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 56666666666444333345667778888888777654444446777888888888887777777776666567888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++..+. .+.++++|+.|++++|... ......+..+++|+.|++++| .+..+.... +..+
T Consensus 232 ~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l 295 (477)
T 2id5_A 232 THC-NLTAVPYL---AVRHLVYLRFLNLSYNPIS----TIEGSMLHELLRLQEIQLVGG--QLAVVEPYA------FRGL 295 (477)
T ss_dssp ESS-CCCSCCHH---HHTTCTTCCEEECCSSCCC----EECTTSCTTCTTCCEEECCSS--CCSEECTTT------BTTC
T ss_pred cCC-cccccCHH---HhcCccccCeeECCCCcCC----ccChhhccccccCCEEECCCC--ccceECHHH------hcCc
Confidence 884 56654332 4567777888888777522 122335678889999999886 555543321 3367
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecCCC
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCP 560 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~ 560 (616)
++|+.|++++| .++.++. .+..+++|++|++++++
T Consensus 296 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 296 NYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 88999999984 6777775 56788899999998843
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-21 Score=205.80 Aligned_cols=305 Identities=20% Similarity=0.208 Sum_probs=218.5
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 218 (616)
.+.+++.+.+.+.... ..+...+..+++|++|+++++. ++.+++. .+..+ ++|++|++++|......
T Consensus 49 ~l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQ-IEEIDTY----AFAYA----HTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCC-CCCCChH----HhcCC----CCCCEEECCCCcCCCCC
Confidence 3567777877765432 3677888999999999999976 6665543 35555 89999999999874445
Q ss_pred ccccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCC
Q 007138 219 PQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 296 (616)
Q Consensus 219 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 296 (616)
|..++.+++|++|++++| .++.+|. +..+++|++|++++|. +..++.... ..+++|+.|+++++. +..++ ...
T Consensus 116 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~ 190 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 190 (597)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC-GGG
T ss_pred HHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC-hhh
Confidence 556799999999999998 5777774 3569999999999997 444443211 567899999999864 55553 355
Q ss_pred CCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCC
Q 007138 297 PPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 376 (616)
Q Consensus 297 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 376 (616)
+++|+.|+++++ .+..+.. .++|++|+++++ .+.. ++.... ++|+.|++++|.
T Consensus 191 l~~L~~L~l~~n-~l~~l~~-----------~~~L~~L~ls~n-~l~~-~~~~~~-------------~~L~~L~L~~n~ 243 (597)
T 3oja_B 191 IPSLFHANVSYN-LLSTLAI-----------PIAVEELDASHN-SINV-VRGPVN-------------VELTILKLQHNN 243 (597)
T ss_dssp CTTCSEEECCSS-CCSEEEC-----------CTTCSEEECCSS-CCCE-EECSCC-------------SCCCEEECCSSC
T ss_pred hhhhhhhhcccC-ccccccC-----------CchhheeeccCC-cccc-cccccC-------------CCCCEEECCCCC
Confidence 679999999887 4544311 357999999984 3443 221111 689999999987
Q ss_pred CchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhh
Q 007138 377 KLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHR 456 (616)
Q Consensus 377 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 456 (616)
..+ +..+..+++|+.|++++|...+..|..+..+++|+.|++++| .+..+|.....+++|++|++++| .++++.+
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~- 318 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER- 318 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG-
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc-
Confidence 654 356788899999999998876667888899999999999998 56777777767779999999995 5665432
Q ss_pred hHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 457 YMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 457 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
.+..+++|+.|++++|... ...+..+++|+.|++++|
T Consensus 319 ---~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 319 ---NQPQFDRLENLYLDHNSIV-------TLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp ---GHHHHTTCSEEECCSSCCC-------CCCCCTTCCCSEEECCSS
T ss_pred ---ccccCCCCCEEECCCCCCC-------CcChhhcCCCCEEEeeCC
Confidence 2345556666666665421 112444555555555554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-20 Score=203.57 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred cCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC--
Q 007138 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-- 244 (616)
Q Consensus 167 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 244 (616)
.+.+++.++++++. +..++.. .+..+ ++|++|++++|......|..++.+++|++|++++|. ++.++.
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCceEEEeeCCC-CCCcCHH----HHccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 46788999998865 6666654 35555 899999999987644445578899999999999984 666653
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccC
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGC 285 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 285 (616)
+..+++|++|++++|. +..++.... ..+++|++|+++++
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNN 157 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCC
Confidence 4568899999998886 556554321 34566777777665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-20 Score=194.15 Aligned_cols=294 Identities=18% Similarity=0.205 Sum_probs=134.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++++.|.+.+..... ..+..+..+++|++|+++++. ++.+.+. .+..+ ++|++|++++|.. +.+|.
T Consensus 32 ~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~-i~~~~~~----~~~~l----~~L~~L~L~~n~l-~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENI-VSAVEPG----AFNNL----FNLRTLGLRSNRL-KLIPL 97 (477)
T ss_dssp TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCC-CSCCT
T ss_pred CCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCc-cCEeChh----hhhCC----ccCCEEECCCCcC-CccCc
Confidence 355555555443322 233445566666666666543 3333221 23333 5566666666543 33433
Q ss_pred -ccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCC
Q 007138 221 -SSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP 297 (616)
Q Consensus 221 -~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 297 (616)
.+..+++|++|++++|. +..++ .+..+++|++|++++|. +..+..... ..+++|++|+++++. ++.++..
T Consensus 98 ~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~--- 170 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDND-LVYISHRAF-SGLNSLEQLTLEKCN-LTSIPTE--- 170 (477)
T ss_dssp TSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTT-CCEECTTSS-TTCTTCCEEEEESCC-CSSCCHH---
T ss_pred ccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCc-cceeChhhc-cCCCCCCEEECCCCc-CcccChh---
Confidence 34556666666666653 33322 23345556666665554 222221100 233445555554432 2222211
Q ss_pred CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCC
Q 007138 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 377 (616)
Q Consensus 298 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 377 (616)
.+.. +++|+.|+++++ .+.. .+.. .+..+ ++|+.|++++|..
T Consensus 171 ---------------------~l~~-----l~~L~~L~l~~n-~i~~-~~~~----~~~~l------~~L~~L~l~~~~~ 212 (477)
T 2id5_A 171 ---------------------ALSH-----LHGLIVLRLRHL-NINA-IRDY----SFKRL------YRLKVLEISHWPY 212 (477)
T ss_dssp ---------------------HHTT-----CTTCCEEEEESC-CCCE-ECTT----CSCSC------TTCCEEEEECCTT
T ss_pred ---------------------Hhcc-----cCCCcEEeCCCC-cCcE-eChh----hcccC------cccceeeCCCCcc
Confidence 1111 344444544442 2221 1100 11111 4555555555555
Q ss_pred chhhhhhccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchh
Q 007138 378 LESIAERLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~ 455 (616)
.+.++.......+|+.|++++|. ++.+| ..+..+++|+.|++++|. +..++.. ...+++|++|++++ +.+++..|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~ 289 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG-GQLAVVEP 289 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCS-SCCSEECT
T ss_pred ccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCC-CccceECH
Confidence 55555444444456666665554 33333 244555666666666553 3333322 22344566666655 34444433
Q ss_pred hhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 456 RYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 456 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
. .+..+++|+.|++++|.... .....+..+++|++|++++|
T Consensus 290 ~---~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 290 Y---AFRGLNYLRVLNVSGNQLTT----LEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp T---TBTTCTTCCEEECCSSCCSC----CCGGGBSCGGGCCEEECCSS
T ss_pred H---HhcCcccCCEEECCCCcCce----eCHhHcCCCcccCEEEccCC
Confidence 2 33444455555555443110 11124566677777777775
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-22 Score=217.29 Aligned_cols=398 Identities=11% Similarity=0.055 Sum_probs=237.0
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCC-ccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICS-LKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
.+++|+.|.+.++..... ....+...++. |++|++++|..++. ..+..+...+++|++|++++|.....
T Consensus 110 ~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL---DLDRLAKARADDLETLKLDKCSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HCTTCCEEEEESCBCCHH---HHHHHHHHHGGGCCEEEEESCEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred hCCCCCeEEeeccEecHH---HHHHHHHhccccCcEEECcCCCCcCH-------HHHHHHHhhCCCCCEEECccccccCc
Confidence 466777777776633221 22222222444 88888888764322 12333333348888888888764222
Q ss_pred ----cccccCCCCCccEEEEcCCCCCCCC-----CC-CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCC
Q 007138 218 ----LPQSSLSLSSLREIEICKCSSLVSF-----PE-VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRS 287 (616)
Q Consensus 218 ----~~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (616)
++.....+++|++|++++|. ++.+ +. ...+++|++|++++|. +..++..+ ..+++|++|+++++..
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNE 255 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCC
T ss_pred chhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhccccccc
Confidence 33334567888888888774 3322 11 2247888888888876 44455433 4457888888875432
Q ss_pred Ccc----ccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCC
Q 007138 288 LTY----IAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNL 363 (616)
Q Consensus 288 l~~----~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~ 363 (616)
... ......+++|+.+.++++. ...+ +..+.. +++|++|++++|. ++. ..+...+..+
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l--~~~~~~-----~~~L~~L~Ls~~~-l~~----~~~~~~~~~~----- 317 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM--PILFPF-----AAQIRKLDLLYAL-LET----EDHCTLIQKC----- 317 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCC-TTTG--GGGGGG-----GGGCCEEEETTCC-CCH----HHHHHHHTTC-----
T ss_pred ccchHHHHHHhhccccccccCccccc-hhHH--HHHHhh-----cCCCcEEecCCCc-CCH----HHHHHHHHhC-----
Confidence 211 1222556788888887752 2222 443333 6789999999977 543 1111222333
Q ss_pred CCcccEEEecCCCCchhhhhhccCCCCccEEEccc----------cccccc--ccccccCCCCCcEEEeccCCCCcc-cC
Q 007138 364 PPSLKSLYVYGCSKLESIAERLDNNTSLETISIER----------CGNLKI--LPSGLHNLRQLQGIKIWNCGNLVS-FP 430 (616)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~--~~~~l~~l~~L~~L~l~~~~~~~~-~~ 430 (616)
++|+.|++.++.....++.....+++|+.|++++ |..++. ++.....+++|++|+++.+ .++. .+
T Consensus 318 -~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~ 395 (592)
T 3ogk_B 318 -PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESL 395 (592)
T ss_dssp -TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHH
T ss_pred -cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHH
Confidence 8899999985533344555556788999999995 655543 2333456899999999554 4432 11
Q ss_pred CCC-CCCCCceEEEcc---CCcccccchhh--hHhhhcccccceeeecCCChH--HHHHhhhcCccccccCCccEEEEec
Q 007138 431 EGG-LPCAKLRRLDIS---DCKRLEGGFHR--YMIALHNLTNLHSLYIGGNME--IWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 431 ~~~-~~~~~L~~L~l~---~c~~l~~~~~~--~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
... ..+++|+.|+++ .|+.+++...+ ....+..+++|+.|+++.+.. ...... .....+++|++|++++
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~---~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS---YIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH---HHHHSCTTCCEEEECS
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH---HHHHhCccceEeeccC
Confidence 111 125589999997 46788774221 222456789999999965331 110001 0123478999999998
Q ss_pred CCCccccccccccccCCCCCCCCccceEecccCccccc--cccccccCccccEEEecCCCCCcccCCCC---CcCCcceE
Q 007138 503 CDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLER--LSSSIVDLQNLTELVLVNCPKLKYFPEKG---LPSSLLQL 577 (616)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--i~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L 577 (616)
|...-..++... ..+++|++|++++|+ ++. ++.....+++|++|++++|+ ++...... .+|.+...
T Consensus 473 n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 473 VGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp CCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEE
T ss_pred CCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEE
Confidence 621112233322 257899999999987 443 34455679999999999976 55532221 24556555
Q ss_pred EEcCC
Q 007138 578 QIYCC 582 (616)
Q Consensus 578 ~i~~c 582 (616)
.+...
T Consensus 544 ~~~~~ 548 (592)
T 3ogk_B 544 LIPSR 548 (592)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 55543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-22 Score=216.88 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=121.1
Q ss_pred CccCCCcceeeccccccccccccc--CC--------CcccccCCCcceEeeccCCCcccc----cCCCCCCccEEeecCC
Q 007138 17 PIPFPCLETLRFENMQEWEDWIPL--RS--------GQGVEWFPKLRELHIISCSKLQGT----FPEHLPALEMLVIEGC 82 (616)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~--~~--------~~~~~~~~~L~~L~l~~c~~l~~~----~p~~~~~L~~L~l~~c 82 (616)
+..|++|++|++.+++...+.... .. ..-...+++|++|++++|. +.+. +...+++|++|++.+|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCc
Confidence 456888999999888755433210 00 0001357889999999885 4433 2235788999999988
Q ss_pred cch-----hhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccc
Q 007138 83 EEL-----LVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYV 157 (616)
Q Consensus 83 ~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 157 (616)
..+ ......+++|++|++++|........ .+ ..++..+++|+.|.+.++. ....
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~--~l------------------~~~~~~~~~L~~L~l~~~~-~~~~ 199 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH--WL------------------SHFPDTYTSLVSLNISCLA-SEVS 199 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG--GG------------------GGSCTTCCCCCEEECTTCC-SCCC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH--HH------------------HHHhhcCCcCcEEEecccC-CcCC
Confidence 643 23345788999999998874331100 00 1233567788888887765 1111
Q ss_pred cccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCC------CcccccccCCCCCccEE
Q 007138 158 WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEG------LVKLPQSSLSLSSLREI 231 (616)
Q Consensus 158 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~L 231 (616)
..........+++|++|++++|..++.++ ..+..+ ++|++|+++++.. +..++..+.++++|+.|
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-----~~~~~~----~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLA-----TLLQRA----PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHH-----HHHHHC----TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHH-----HHHhcC----CcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 12334445667888888888775444422 223444 7788888766532 12344456667777777
Q ss_pred -EEcCCCCCCCCCCCC-CCCCCcEEEccCCC
Q 007138 232 -EICKCSSLVSFPEVA-LPSKLKNIWISTCD 260 (616)
Q Consensus 232 -~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~ 260 (616)
.+.+. ....++... .+++|++|++++|.
T Consensus 271 s~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 271 SGFWDA-VPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp ECCBTC-CGGGGGGGHHHHTTCCEEECTTCC
T ss_pred cCCccc-chhhHHHHHHhhCCCCEEEccCCC
Confidence 23222 112222211 35666666666665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-21 Score=213.04 Aligned_cols=381 Identities=17% Similarity=0.184 Sum_probs=215.0
Q ss_pred ccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccc-cC---CCCCCccEEeecCCcc-------hh
Q 007138 18 IPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGT-FP---EHLPALEMLVIEGCEE-------LL 86 (616)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~p---~~~~~L~~L~l~~c~~-------l~ 86 (616)
..+++|++|++.+|. +.+...... . ..+++|++|++.+|..+.+. ++ ..+++|++|++++|.. +.
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~~~~l-~--~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDCLELI-A--KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHHHHHH-H--HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HhCCCCCeEEeeCcE-EcHHHHHHH-H--HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 468899999999985 443332111 0 25899999999999655431 22 3689999999999971 22
Q ss_pred hhhcCCCCccEEEeCCCc-ceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHH
Q 007138 87 VSVASLPALCKFEIGGCK-KVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELL 165 (616)
Q Consensus 87 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (616)
.....+++|++|++++|. ......+. .+...+++|+.|.+.++.... ..+..+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~----------------------~l~~~~~~L~~L~L~~~~~~~----~l~~~~ 231 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALE----------------------RLVTRCPNLKSLKLNRAVPLE----KLATLL 231 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHH----------------------HHHHHCTTCCEEECCTTSCHH----HHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHH----------------------HHHHhCCCCcEEecCCCCcHH----HHHHHH
Confidence 233478899999999986 11111110 011346899999999884432 256677
Q ss_pred hcCCCccEEeeccCCC-ccccchhhhhhHHhhhhhccCCCcEE-EccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC
Q 007138 166 QDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCELSCRLEYL-RLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP 243 (616)
Q Consensus 166 ~~l~~L~~L~l~~~~~-l~~l~~~~~~~~l~~l~~~~~~L~~L-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 243 (616)
..+++|++|++..+.. +..-.-..+...+.. +++|+.| .+.+... ..++..+..+++|++|++++|. ++...
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~----~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~-l~~~~ 305 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSG----CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYAT-VQSYD 305 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT----CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCC-CCHHH
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhc----CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCC-CCHHH
Confidence 8999999999887653 111001111122333 3888888 4444332 4566656678899999999986 54321
Q ss_pred --C-CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccC--------CCCcccccc---CCCCCccEEEEecCC
Q 007138 244 --E-VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGC--------RSLTYIAAV---QLPPSLKQLSISDCD 309 (616)
Q Consensus 244 --~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~~~~~---~~~~~L~~L~l~~~~ 309 (616)
. ...+++|++|++.+| +.+.........+++|++|++.+| ..+...... ..+++|+.|.+. |.
T Consensus 306 l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~ 382 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CR 382 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ES
T ss_pred HHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cC
Confidence 1 345789999999887 222111111134678888888443 333321111 225677877543 33
Q ss_pred CCCcccccccccccccccCCCccEEecc-----CCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhh
Q 007138 310 NIRTLTVEEGIQSSRRYTSCLLEHLDIS-----SCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAER 384 (616)
Q Consensus 310 ~l~~l~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 384 (616)
.++...+..... .+++|++|+++ +|..++.......++..+..+ ++|+.|++++ ...+..+..
T Consensus 383 ~l~~~~~~~l~~-----~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~------~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 383 QMTNAALITIAR-----NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC------KDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp CCCHHHHHHHHH-----HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC------TTCCEEECCS-SCCHHHHHH
T ss_pred CcCHHHHHHHHh-----hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC------CCccEEeecC-cccHHHHHH
Confidence 554432111111 25677888777 555655311011122222333 5677777755 222222223
Q ss_pred ccC-CCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcc-cCCCCCCCCCceEEEccCCcc
Q 007138 385 LDN-NTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVS-FPEGGLPCAKLRRLDISDCKR 449 (616)
Q Consensus 385 ~~~-~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~ 449 (616)
+.. +++|+.|++++|.........+ ..+++|+.|++++|+.... +......+++|++|++++|+.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 332 5667777776665322222222 4566777777776653111 111122244666677666643
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=174.61 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=115.9
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccc--cccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLK--ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++| .+..+|....+ +|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~--~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP--SLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCT--TCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccc--cCCEE
Confidence 345555555554443334456667777888887765432 34556778888888888887 56667665553 88999
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++| .+++..+. .+..+++|++|++++| .++.++... +.
T Consensus 198 ~l~~n-~l~~~~~~-------------------------------~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~ 237 (330)
T 1xku_A 198 HLDGN-KITKVDAA-------------------------------SLKGLNNLAKLGLSFN--SISAVDNGS------LA 237 (330)
T ss_dssp ECTTS-CCCEECTG-------------------------------GGTTCTTCCEEECCSS--CCCEECTTT------GG
T ss_pred ECCCC-cCCccCHH-------------------------------HhcCCCCCCEEECCCC--cCceeChhh------cc
Confidence 99884 56655443 3345556666666654 343333211 12
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCC--------cCCcceEEEcCCchhhhhhhcCCC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--------PSSLLQLQIYCCPLIAEKCRKDGG 594 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~i~~c~~l~~~~~~~~~ 594 (616)
.+++|++|++++| .+..+|..+..+++|++|++++ +.++.++...+ .+.|+.++++++|..... ...
T Consensus 238 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~---i~~ 312 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE---IQP 312 (330)
T ss_dssp GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG---SCG
T ss_pred CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc---cCc
Confidence 4566777777763 4666666666677777777776 56666655322 256777777777633211 111
Q ss_pred CcccccCCccEEEEcCe
Q 007138 595 QYWDLLTHIPHVVIDDK 611 (616)
Q Consensus 595 ~~w~~i~~i~~~~~~~~ 611 (616)
..+..+.++..+.+.++
T Consensus 313 ~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGTTCCCGGGEEC---
T ss_pred cccccccceeEEEeccc
Confidence 23444556666655443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-19 Score=176.23 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=121.5
Q ss_pred CCCcEEEccCCCCCcccc-cccCCCCCccEEEEcCCCCCCCC-C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLP-QSSLSLSSLREIEICKCSSLVSF-P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|+.|++++|.. +.++ ..++.+++|++|++++|. ++.+ | .+..+++|++|++++|. ++.++... .++|+
T Consensus 52 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM----PKTLQ 124 (330)
T ss_dssp TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC----CTTCC
T ss_pred CCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccChhh----ccccc
Confidence 3455555555443 2222 234455555555555542 3333 2 23334555555555444 33333321 14455
Q ss_pred EEEeccCCCCccccc--cCCCCCccEEEEecCCCCCccc-ccccccccccccCCCccEEeccCCCCcccccccCCCcccc
Q 007138 279 ILSIHGCRSLTYIAA--VQLPPSLKQLSISDCDNIRTLT-VEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 355 (616)
+|+++++. +..++. ...+++|+.|+++++. ++... .+..+.. +++|++|+++++ .++. ++....
T Consensus 125 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-----l~~L~~L~l~~n-~l~~-l~~~~~---- 191 (330)
T 1xku_A 125 ELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQG-----MKKLSYIRIADT-NITT-IPQGLP---- 191 (330)
T ss_dssp EEECCSSC-CCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGG-----CTTCCEEECCSS-CCCS-CCSSCC----
T ss_pred EEECCCCc-ccccCHhHhcCCccccEEECCCCc-CCccCcChhhccC-----CCCcCEEECCCC-cccc-CCcccc----
Confidence 55555432 333222 1334455666655552 22110 0222222 567777777763 2332 221111
Q ss_pred cccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCC
Q 007138 356 ESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLP 435 (616)
Q Consensus 356 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 435 (616)
++|++|++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++| .+..+|.....
T Consensus 192 ---------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~ 261 (330)
T 1xku_A 192 ---------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLAD 261 (330)
T ss_dssp ---------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTT
T ss_pred ---------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhcc
Confidence 57888888887665555666777888888888887654444446778888888888887 56677776667
Q ss_pred CCCceEEEccCCcccccchh
Q 007138 436 CAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~~~ 455 (616)
+++|++|++++ +.+++..+
T Consensus 262 l~~L~~L~l~~-N~i~~~~~ 280 (330)
T 1xku_A 262 HKYIQVVYLHN-NNISAIGS 280 (330)
T ss_dssp CSSCCEEECCS-SCCCCCCT
T ss_pred CCCcCEEECCC-CcCCccCh
Confidence 77888888888 45665543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-21 Score=206.18 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=25.9
Q ss_pred CCcceEeeccCCCccccc----CCCCCCccEEeecCCcc-------hhhhhcCCCCccEEEeCCCcc
Q 007138 50 PKLRELHIISCSKLQGTF----PEHLPALEMLVIEGCEE-------LLVSVASLPALCKFEIGGCKK 105 (616)
Q Consensus 50 ~~L~~L~l~~c~~l~~~~----p~~~~~L~~L~l~~c~~-------l~~~~~~~~~L~~L~l~~~~~ 105 (616)
++|++|+++++. +.+.. ...+++|+.|++++|.- +...+..+++|++|++++|..
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC
Confidence 455666665553 22111 11345555555555541 123344455555555555543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-19 Score=177.27 Aligned_cols=221 Identities=18% Similarity=0.138 Sum_probs=115.3
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCC-C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSF-P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
++|++|++++|......|..++.+++|++|++++|. ++.+ + .+..+++|++|++++|. +..++... .++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~----~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL----PSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC----CTTCCE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccc----cccCCE
Confidence 456666666655422223345556666666666553 3333 2 23445566666665554 44444331 145556
Q ss_pred EEeccCCCCccccc--cCCCCCccEEEEecCCCCCcccc-cccccccccccCCCccEEeccCCCCcccccccCCCccccc
Q 007138 280 LSIHGCRSLTYIAA--VQLPPSLKQLSISDCDNIRTLTV-EEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLE 356 (616)
Q Consensus 280 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 356 (616)
|+++++. +..++. ...+++|+.|+++++ .++...+ +..+.. + +|++|+++++ .++. ++....
T Consensus 128 L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~-----l-~L~~L~l~~n-~l~~-l~~~~~----- 192 (332)
T 2ft3_A 128 LRIHDNR-IRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDG-----L-KLNYLRISEA-KLTG-IPKDLP----- 192 (332)
T ss_dssp EECCSSC-CCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCS-----C-CCSCCBCCSS-BCSS-CCSSSC-----
T ss_pred EECCCCc-cCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccC-----C-ccCEEECcCC-CCCc-cCcccc-----
Confidence 6655542 333332 134456666666555 2322100 111111 2 5666666652 2222 111111
Q ss_pred ccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCC
Q 007138 357 SLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPC 436 (616)
Q Consensus 357 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 436 (616)
++|++|++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++| .+..+|.....+
T Consensus 193 --------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l 263 (332)
T 2ft3_A 193 --------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL 263 (332)
T ss_dssp --------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC
T ss_pred --------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC
Confidence 45666777766555444455666777777777776544333445667777777777776 455666655556
Q ss_pred CCceEEEccCCcccccc
Q 007138 437 AKLRRLDISDCKRLEGG 453 (616)
Q Consensus 437 ~~L~~L~l~~c~~l~~~ 453 (616)
++|++|++++ +.+++.
T Consensus 264 ~~L~~L~l~~-N~l~~~ 279 (332)
T 2ft3_A 264 KLLQVVYLHT-NNITKV 279 (332)
T ss_dssp TTCCEEECCS-SCCCBC
T ss_pred ccCCEEECCC-CCCCcc
Confidence 6777777776 455554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=179.80 Aligned_cols=252 Identities=17% Similarity=0.155 Sum_probs=184.5
Q ss_pred CccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCc
Q 007138 299 SLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL 378 (616)
Q Consensus 299 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~ 378 (616)
+++.|+++++.--....++..+.. +++|++|++++++++.. .+|..+..+ ++|++|++++|...
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~-----l~~L~~L~L~~~n~l~~-----~~p~~l~~l------~~L~~L~Ls~n~l~ 114 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLAN-----LPYLNFLYIGGINNLVG-----PIPPAIAKL------TQLHYLYITHTNVS 114 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG-----CTTCSEEEEEEETTEES-----CCCGGGGGC------TTCSEEEEEEECCE
T ss_pred eEEEEECCCCCccCCcccChhHhC-----CCCCCeeeCCCCCcccc-----cCChhHhcC------CCCCEEECcCCeeC
Confidence 566666666632220011444444 77888888886455553 334445555 88999999988777
Q ss_pred hhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCC-CceEEEccCCcccccchhhh
Q 007138 379 ESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA-KLRRLDISDCKRLEGGFHRY 457 (616)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~ 457 (616)
+.+|..+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|.....++ +|++|++++ +.+++..|.
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~- 192 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPP- 192 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCG-
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCCh-
Confidence 77888888899999999999876667888888999999999998854446776666665 899999998 577777665
Q ss_pred HhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcc
Q 007138 458 MIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN 537 (616)
Q Consensus 458 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 537 (616)
.+..++ |+.|++++|.... ..+..+..+++|+.|++++| .+....... ..+++|++|++++|.-
T Consensus 193 --~~~~l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~-------~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 193 --TFANLN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRNNRI 256 (313)
T ss_dssp --GGGGCC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCSSCC
T ss_pred --HHhCCc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCC--ceeeecCcc-------cccCCCCEEECcCCcc
Confidence 344555 9999999886321 22345788999999999996 454333322 2679999999999654
Q ss_pred ccccccccccCccccEEEecCCCCCc-ccCCCCCcCCcceEEEcCCchh
Q 007138 538 LERLSSSIVDLQNLTELVLVNCPKLK-YFPEKGLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 538 l~~i~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~i~~c~~l 585 (616)
...+|..+..+++|++|++++| .+. .+|....+++|+++++++++.+
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cCcCChHHhcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCc
Confidence 4478888999999999999994 555 7887766889999999998855
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-19 Score=175.69 Aligned_cols=230 Identities=20% Similarity=0.325 Sum_probs=129.0
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC-CCCCCCCcEEEccCCCCccccchhhccCCCCCccEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEIL 280 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 280 (616)
.+++.|++++|.. +.+|..++.+++|++|++++|. ++.+|. +..+++|++|++++|. +..++..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCEE
Confidence 5666666666554 4666666666666666666663 445552 4456666666666665 33554433 344556666
Q ss_pred EeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccccccccc
Q 007138 281 SIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEV 360 (616)
Q Consensus 281 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~ 360 (616)
++++|.....++.. +....+ ...+.. +++|++|+++++ .++ .+|..+..+
T Consensus 156 ~L~~n~~~~~~p~~-----~~~~~~-----------~~~~~~-----l~~L~~L~L~~n-~l~------~lp~~l~~l-- 205 (328)
T 4fcg_A 156 SIRACPELTELPEP-----LASTDA-----------SGEHQG-----LVNLQSLRLEWT-GIR------SLPASIANL-- 205 (328)
T ss_dssp EEEEETTCCCCCSC-----SEEEC------------CCCEEE-----STTCCEEEEEEE-CCC------CCCGGGGGC--
T ss_pred ECCCCCCccccChh-----Hhhccc-----------hhhhcc-----CCCCCEEECcCC-CcC------cchHhhcCC--
Confidence 66655444433321 111000 000111 344555555542 222 122333333
Q ss_pred CCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCce
Q 007138 361 GNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLR 440 (616)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 440 (616)
++|++|++++|... .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|.....+++|+
T Consensus 206 ----~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 206 ----QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp ----TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred ----CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 56666666666443 3555566667777777777776666766677777777777777766666666655666777
Q ss_pred EEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 441 RLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 441 ~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+|++++|+. .+.+|. .++++++|+.+++..+
T Consensus 281 ~L~L~~n~~-~~~iP~---~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 281 KLDLRGCVN-LSRLPS---LIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTT-CCCCCG---GGGGSCTTCEEECCGG
T ss_pred EEeCCCCCc-hhhccH---HHhhccCceEEeCCHH
Confidence 777777543 344443 4566677777777655
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-20 Score=198.08 Aligned_cols=386 Identities=20% Similarity=0.221 Sum_probs=183.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++++.|++.+..-... .....+..+++|++|++++|. ++......+...+..+ ++|++|++++|......+.
T Consensus 3 ~~l~~L~Ls~~~l~~~---~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVN----PALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCCCCHH---HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhhcccCch---hHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHHH
Confidence 3456666655443322 344457788889999998876 4432222222234444 7888999988775332222
Q ss_pred c-cCCCC----CccEEEEcCCCCCCC-----CC-CCCCCCCCcEEEccCCCCccccch-hhc---cCCCCCccEEEeccC
Q 007138 221 S-SLSLS----SLREIEICKCSSLVS-----FP-EVALPSKLKNIWISTCDALKSLPE-AWM---CDTNSSLEILSIHGC 285 (616)
Q Consensus 221 ~-~~~l~----~L~~L~l~~~~~l~~-----~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~~~~~~L~~L~l~~~ 285 (616)
. ...++ +|++|++++|. ++. ++ .+..+++|++|++++|. +.+... .+. ....++|++|++++|
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 2 22344 68888888884 543 22 34557888888888877 433211 110 122356777777776
Q ss_pred CCCccccc------cCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccc
Q 007138 286 RSLTYIAA------VQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLE 359 (616)
Q Consensus 286 ~~l~~~~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 359 (616)
. +..... ....++|+.|+++++. ++...... +........++|++|++++| .++. .....++..+..+
T Consensus 153 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n-~l~~-~~~~~l~~~l~~~- 226 (461)
T 1z7x_W 153 S-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRV-LCQGLKDSPCQLEALKLESC-GVTS-DNCRDLCGIVASK- 226 (461)
T ss_dssp C-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH-HHHHHHHSCCCCCEEECTTS-CCBT-THHHHHHHHHHHC-
T ss_pred C-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHH-HHHHHhcCCCCceEEEccCC-CCcH-HHHHHHHHHHHhC-
Confidence 3 332110 1223566777766663 33221100 00000001235666666664 2221 0001122233333
Q ss_pred cCCCCCcccEEEecCCCCchhh----hh-hccCCCCccEEEccccccccc----ccccccCCCCCcEEEeccCCCCcc--
Q 007138 360 VGNLPPSLKSLYVYGCSKLESI----AE-RLDNNTSLETISIERCGNLKI----LPSGLHNLRQLQGIKIWNCGNLVS-- 428 (616)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~-- 428 (616)
++|++|++++|...+.- .. ....+++|+.|++++|..... ++..+..+++|++|++++|. +..
T Consensus 227 -----~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 300 (461)
T 1z7x_W 227 -----ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG 300 (461)
T ss_dssp -----TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred -----CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHH
Confidence 55666666665432211 11 122355666666666532221 34444455666666666552 221
Q ss_pred ---cCCCC-CCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCC
Q 007138 429 ---FPEGG-LPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD 504 (616)
Q Consensus 429 ---~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 504 (616)
+.... .+.++|++|++++|. +++.... ..+..+..+++|++|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~---------------------------~l~~~l~~~~~L~~L~Ls~n- 351 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCS---------------------------HFSSVLAQNRFLLELQISNN- 351 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH---------------------------HHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhccCCccceeeEcCCCC-CchHHHH---------------------------HHHHHHhhCCCccEEEccCC-
Confidence 11000 111255666666542 3332111 11112344456666666654
Q ss_pred CccccccccccccCCCCC-CCCccceEecccCcccc-----ccccccccCccccEEEecCCCCCcccCC-------CCCc
Q 007138 505 DDMVSFPLEDKRLGTALP-LPASLTTLWISRFPNLE-----RLSSSIVDLQNLTELVLVNCPKLKYFPE-------KGLP 571 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~-----~i~~~~~~~~~L~~L~l~~c~~l~~l~~-------~~~~ 571 (616)
.+....... +...+. ..++|++|++++|. ++ .++..+..+++|++|++++ +.+..... ....
T Consensus 352 -~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~-N~i~~~~~~~l~~~l~~~~ 426 (461)
T 1z7x_W 352 -RLEDAGVRE--LCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQPG 426 (461)
T ss_dssp -BCHHHHHHH--HHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTT
T ss_pred -ccccccHHH--HHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC-CCCCHHHHHHHHHHhccCC
Confidence 222211100 000000 14567777777653 44 4555666677777777777 34443211 0112
Q ss_pred CCcceEEEcCC
Q 007138 572 SSLLQLQIYCC 582 (616)
Q Consensus 572 ~~L~~L~i~~c 582 (616)
.+|+.|++.++
T Consensus 427 ~~L~~L~~~~~ 437 (461)
T 1z7x_W 427 CLLEQLVLYDI 437 (461)
T ss_dssp CCCCEEECTTC
T ss_pred cchhheeeccc
Confidence 35666666654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=167.16 Aligned_cols=289 Identities=16% Similarity=0.167 Sum_probs=153.3
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCcccc-chhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSL-PEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~ 278 (616)
.+++.++++++.. +.+|..+ .++|+.|++++|. ++.++ .+..+++|++|++++|. +..+ +..+ ..+++|+
T Consensus 33 c~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF--SPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS--TTCTTCC
T ss_pred ccCCEEECCCCCc-cccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh--hCcCCCC
Confidence 4688999988764 6788765 4789999999984 66664 35668999999999887 4444 3332 5567888
Q ss_pred EEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccc-ccccccccCCCccEEeccCCCCcccccccCCCcccccc
Q 007138 279 ILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG-IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 357 (616)
+|+++++. ++.++... .++|+.|+++++ .++.+ +.. +.. +
T Consensus 106 ~L~L~~n~-l~~l~~~~-~~~L~~L~l~~n-~i~~~--~~~~~~~-----l----------------------------- 146 (332)
T 2ft3_A 106 KLYISKNH-LVEIPPNL-PSSLVELRIHDN-RIRKV--PKGVFSG-----L----------------------------- 146 (332)
T ss_dssp EEECCSSC-CCSCCSSC-CTTCCEEECCSS-CCCCC--CSGGGSS-----C-----------------------------
T ss_pred EEECCCCc-CCccCccc-cccCCEEECCCC-ccCcc--CHhHhCC-----C-----------------------------
Confidence 88887753 44444322 256666666665 33333 211 111 3
Q ss_pred cccCCCCCcccEEEecCCCCch--hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC-CCCC
Q 007138 358 LEVGNLPPSLKSLYVYGCSKLE--SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP-EGGL 434 (616)
Q Consensus 358 l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 434 (616)
++|+.|++++|.... ..+..+..+ +|+.|++++|. ++.+|..+. ++|++|++++| .+..++ ....
T Consensus 147 -------~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~ 214 (332)
T 2ft3_A 147 -------RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN-KIQAIELEDLL 214 (332)
T ss_dssp -------SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSST
T ss_pred -------ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCC-cCCccCHHHhc
Confidence 445555555443321 223333333 66666666654 334544332 56666666666 333333 3334
Q ss_pred CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccc
Q 007138 435 PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLED 514 (616)
Q Consensus 435 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~ 514 (616)
.+++|++|++++ +.+++..+. .+..+++|+.|++++|... ..+..+..+++|+.|++++| .++.++...
T Consensus 215 ~l~~L~~L~L~~-N~l~~~~~~---~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N--~l~~~~~~~ 283 (332)
T 2ft3_A 215 RYSKLYRLGLGH-NQIRMIENG---SLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTN--NITKVGVND 283 (332)
T ss_dssp TCTTCSCCBCCS-SCCCCCCTT---GGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSS--CCCBCCTTS
T ss_pred CCCCCCEEECCC-CcCCcCChh---HhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCC--CCCccChhH
Confidence 455667777766 355554332 2334444444444444311 11223455666666666665 444444322
Q ss_pred cccCCCCCCCCccceEecccCccc--cccccccccCccccEEEecCC
Q 007138 515 KRLGTALPLPASLTTLWISRFPNL--ERLSSSIVDLQNLTELVLVNC 559 (616)
Q Consensus 515 ~~~~~~~~~~~~L~~L~l~~c~~l--~~i~~~~~~~~~L~~L~l~~c 559 (616)
-.-.......++|+.|++.+++.. ...|..+..++.|+.++++++
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 000000011355666666665432 122334555666666666654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-17 Score=175.41 Aligned_cols=254 Identities=28% Similarity=0.346 Sum_probs=147.8
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+++.|+++++.. +.+|..+. ++|++|++++| .++.+|. .+++|++|++++|. ++.++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 3577777777664 56776554 67777777777 4666665 56777777777776 555553 346677777
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++ .++.++. .+++|+.|+++++ +++.+ +.. +++|++|+++++ .++. +|..+
T Consensus 108 Ls~N-~l~~l~~--~l~~L~~L~L~~N-~l~~l--p~~--------l~~L~~L~Ls~N-~l~~------l~~~~------ 160 (622)
T 3g06_A 108 IFSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------PPGLQELSVSDN-QLAS------LPALP------ 160 (622)
T ss_dssp ECSC-CCCCCCC--CCTTCCEEECCSS-CCSCC--CCC--------CTTCCEEECCSS-CCSC------CCCCC------
T ss_pred CcCC-cCCCCCC--CCCCcCEEECCCC-CCCcC--CCC--------CCCCCEEECcCC-cCCC------cCCcc------
Confidence 7765 3555443 4567777777766 45544 332 245777777763 3332 11111
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceE
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRR 441 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 441 (616)
++|+.|++++|... .+| ..+++|+.|++++|. ++.+|. .+++|+.|++++| .+..+|.. +++|++
T Consensus 161 ---~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~~---~~~L~~ 225 (622)
T 3g06_A 161 ---SELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPAL---PSGLKE 225 (622)
T ss_dssp ---TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCCC---CTTCCE
T ss_pred ---CCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCCC---CCCCCE
Confidence 56667777666433 344 345677777777654 344443 2356777777766 44555532 236777
Q ss_pred EEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCC
Q 007138 442 LDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTAL 521 (616)
Q Consensus 442 L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~ 521 (616)
|++++| .++++ | ..+++|+.|++++| .++.++.
T Consensus 226 L~Ls~N-~L~~l-p----------------------------------~~l~~L~~L~Ls~N--~L~~lp~--------- 258 (622)
T 3g06_A 226 LIVSGN-RLTSL-P----------------------------------VLPSELKELMVSGN--RLTSLPM--------- 258 (622)
T ss_dssp EECCSS-CCSCC-C----------------------------------CCCTTCCEEECCSS--CCSCCCC---------
T ss_pred EEccCC-ccCcC-C----------------------------------CCCCcCcEEECCCC--CCCcCCc---------
Confidence 777763 45442 1 22355666666654 4444444
Q ss_pred CCCCccceEecccCccccccccccccCccccEEEecC
Q 007138 522 PLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
.+++|+.|++++| .++.+|..+..+++|+.|++++
T Consensus 259 -~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 259 -LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp -CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCS
T ss_pred -ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecC
Confidence 2456666666663 4556665566666666666666
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=170.63 Aligned_cols=173 Identities=23% Similarity=0.314 Sum_probs=90.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccC---------CCCCcEEEeccCCCCcccCCCCCC
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHN---------LRQLQGIKIWNCGNLVSFPEGGLP 435 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~ 435 (616)
++|++|++++|... .+|..+..+++|+.|++++|...+.+|..+.. +++|++|++++| .+..+|.....
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~ 204 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIAN 204 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGG
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcC
Confidence 45555555555333 44545555555555555555555555443332 555555555554 33344444334
Q ss_pred CCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccccccccc
Q 007138 436 CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDK 515 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~ 515 (616)
+++|++|++++| .+++..+ .+..+++|++|++++| .....++...
T Consensus 205 l~~L~~L~L~~N-~l~~l~~--------------------------------~l~~l~~L~~L~Ls~n-~~~~~~p~~~- 249 (328)
T 4fcg_A 205 LQNLKSLKIRNS-PLSALGP--------------------------------AIHHLPKLEELDLRGC-TALRNYPPIF- 249 (328)
T ss_dssp CTTCCEEEEESS-CCCCCCG--------------------------------GGGGCTTCCEEECTTC-TTCCBCCCCT-
T ss_pred CCCCCEEEccCC-CCCcCch--------------------------------hhccCCCCCEEECcCC-cchhhhHHHh-
Confidence 445555555552 3333211 3445566666666663 3333444332
Q ss_pred ccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-CCcCCcceEEEc
Q 007138 516 RLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIY 580 (616)
Q Consensus 516 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~ 580 (616)
..+++|++|++++|+.++.+|..+..+++|++|++++|+.+..+|.. +.+++|+.+++.
T Consensus 250 ------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 250 ------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred ------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 24566666666666666666666666666666666666666666653 225556666554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=171.94 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=29.2
Q ss_pred cccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccC
Q 007138 366 SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~ 423 (616)
+|++|++++|...+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 455555555544444444444443 555555555443344444555555555555554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=172.80 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=92.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcccCCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......+..+ ..+++|++|++++| .+..++... .+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-ccccCCEEE
Confidence 344444444444333333344555667777777665443333433 35677777777776 345554333 245788888
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++ +.+++..+ .+..+++|+.|++++| .++.++... ..
T Consensus 198 Ls~-N~l~~l~~--------------------------------~~~~l~~L~~L~L~~N--~l~~l~~~~-------~~ 235 (317)
T 3o53_A 198 LSS-NKLAFMGP--------------------------------EFQSAAGVTWISLRNN--KLVLIEKAL-------RF 235 (317)
T ss_dssp CCS-SCCCEECG--------------------------------GGGGGTTCSEEECTTS--CCCEECTTC-------CC
T ss_pred CCC-CcCCcchh--------------------------------hhcccCcccEEECcCC--cccchhhHh-------hc
Confidence 887 45655433 2344566677777665 555555433 25
Q ss_pred CCccceEecccCccc-cccccccccCccccEEEecCCCCCcccCC
Q 007138 524 PASLTTLWISRFPNL-ERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
+++|+.|++++|+.. ..++..+..++.|+.+++.+++.++....
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 677777787775544 24555667777888887776666555443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=164.71 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=42.9
Q ss_pred CCCcEEEccCCCCCccccc-ccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|++|++++|.. +.++. .+..+++|++|++++| .++.++ .+..+++|++|++++|. ++.++.... ..+++|+
T Consensus 52 ~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCS
T ss_pred ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCC
Confidence 5677777777664 44443 5666777777777766 344443 24446666666666665 334433211 2334444
Q ss_pred EEEecc
Q 007138 279 ILSIHG 284 (616)
Q Consensus 279 ~L~l~~ 284 (616)
+|++++
T Consensus 128 ~L~L~~ 133 (353)
T 2z80_A 128 FLNLLG 133 (353)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 444443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-18 Score=167.39 Aligned_cols=261 Identities=15% Similarity=0.177 Sum_probs=149.5
Q ss_pred EEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCC
Q 007138 146 LEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSL 225 (616)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l 225 (616)
+.+.+++.... ...+...+..+++|++|+++++. ++.+++. .+..+ ++|++|++++|.. +..+. +..+
T Consensus 12 l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNP-LSQISAA----DLAPF----TKLELLNLSSNVL-YETLD-LESL 79 (317)
T ss_dssp EEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSC-CCCCCHH----HHTTC----TTCCEEECTTSCC-EEEEE-ETTC
T ss_pred eeEeeccccch-hhhHHHHhccCCCCCEEECcCCc-cCcCCHH----HhhCC----CcCCEEECCCCcC-Ccchh-hhhc
Confidence 44444444433 22333444555666666666653 4443322 24444 5666666666554 32332 5566
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEE
Q 007138 226 SSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSI 305 (616)
Q Consensus 226 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 305 (616)
++|++|++++| .++.++ ..++|++|++++|. +..++. .. +++|+.|++
T Consensus 80 ~~L~~L~Ls~n-~l~~l~---~~~~L~~L~l~~n~-l~~~~~----~~-----------------------~~~L~~L~l 127 (317)
T 3o53_A 80 STLRTLDLNNN-YVQELL---VGPSIETLHAANNN-ISRVSC----SR-----------------------GQGKKNIYL 127 (317)
T ss_dssp TTCCEEECCSS-EEEEEE---ECTTCCEEECCSSC-CSEEEE----CC-----------------------CSSCEEEEC
T ss_pred CCCCEEECcCC-cccccc---CCCCcCEEECCCCc-cCCcCc----cc-----------------------cCCCCEEEC
Confidence 66666666665 244333 23556666665554 222221 11 334555555
Q ss_pred ecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhc
Q 007138 306 SDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL 385 (616)
Q Consensus 306 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (616)
+++ .++.+. +..+.. +++|++|+++++ .++.+.+ ..+. ..+ ++|++|++++|.... ++. .
T Consensus 128 ~~N-~l~~~~-~~~~~~-----l~~L~~L~Ls~N-~l~~~~~-~~~~---~~l------~~L~~L~L~~N~l~~-~~~-~ 187 (317)
T 3o53_A 128 ANN-KITMLR-DLDEGC-----RSRVQYLDLKLN-EIDTVNF-AELA---ASS------DTLEHLNLQYNFIYD-VKG-Q 187 (317)
T ss_dssp CSS-CCCSGG-GBCTGG-----GSSEEEEECTTS-CCCEEEG-GGGG---GGT------TTCCEEECTTSCCCE-EEC-C
T ss_pred CCC-CCCCcc-chhhhc-----cCCCCEEECCCC-CCCcccH-HHHh---hcc------CcCCEEECCCCcCcc-ccc-c
Confidence 554 233320 112222 566777777763 3443111 1111 112 678888888875443 332 3
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccc-cchhhhHhhhccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLE-GGFHRYMIALHNL 464 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~l 464 (616)
..+++|+.|++++|. ++.+|..+..+++|++|++++| .+..+|.....+++|++|+++++ .++ +.+|. .+..+
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N-~~~~~~~~~---~~~~~ 261 (317)
T 3o53_A 188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN-GFHCGTLRD---FFSKN 261 (317)
T ss_dssp CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC-CCBHHHHHH---HHHTC
T ss_pred cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC-CccCcCHHH---HHhcc
Confidence 347899999999876 5567667888999999999998 66678877767779999999995 455 54444 45677
Q ss_pred ccceeeecCCCh
Q 007138 465 TNLHSLYIGGNM 476 (616)
Q Consensus 465 ~~L~~L~l~~~~ 476 (616)
++|+.+++.++.
T Consensus 262 ~~L~~l~l~~~~ 273 (317)
T 3o53_A 262 QRVQTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccceEEECCCch
Confidence 888888887554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=171.16 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=108.2
Q ss_pred HhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCC
Q 007138 194 QQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDT 273 (616)
Q Consensus 194 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 273 (616)
+..+...+++|++|++++|......|..++.+++|++|++++|. ++..+++..+++|++|++++|. +..++..
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~----- 98 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG----- 98 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-----
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-----
Confidence 44443334689999999987644455678889999999998884 5544446667777777777765 3332211
Q ss_pred CCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcc
Q 007138 274 NSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPA 353 (616)
Q Consensus 274 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 353 (616)
+ +|+.|++++| .+..+ +.. . +
T Consensus 99 -~-----------------------~L~~L~L~~N-~l~~~--~~~--~-----l------------------------- 119 (487)
T 3oja_A 99 -P-----------------------SIETLHAANN-NISRV--SCS--R-----G------------------------- 119 (487)
T ss_dssp -T-----------------------TCCEEECCSS-CCCCE--EEC--C-----C-------------------------
T ss_pred -C-----------------------CcCEEECcCC-cCCCC--Ccc--c-----c-------------------------
Confidence 2 3444444443 22221 000 0 1
Q ss_pred cccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccccccc-CCCCCcEEEeccCCCCcccCCC
Q 007138 354 TLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLH-NLRQLQGIKIWNCGNLVSFPEG 432 (616)
Q Consensus 354 ~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~ 432 (616)
++|+.|++++|...+..|..+..+++|+.|++++|...+..|..+. .+++|+.|++++| .+..++..
T Consensus 120 -----------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~ 187 (487)
T 3oja_A 120 -----------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ 187 (487)
T ss_dssp -----------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC
T ss_pred -----------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc
Confidence 4455555555554444455556666777777777665554555554 6777778887777 34444433
Q ss_pred CCCCCCceEEEccCCcccccchh
Q 007138 433 GLPCAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 433 ~~~~~~L~~L~l~~c~~l~~~~~ 455 (616)
. .+++|++|++++ +.+++..|
T Consensus 188 ~-~l~~L~~L~Ls~-N~l~~~~~ 208 (487)
T 3oja_A 188 V-VFAKLKTLDLSS-NKLAFMGP 208 (487)
T ss_dssp C-CCTTCCEEECCS-SCCCEECG
T ss_pred c-cCCCCCEEECCC-CCCCCCCH
Confidence 2 345788888887 45666544
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-16 Score=161.35 Aligned_cols=198 Identities=20% Similarity=0.235 Sum_probs=108.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|. ++.++. .+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEe
Confidence 455555555554333333445555556666665543 333332 3455556666666555 23344332 2234456666
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++|+.+..+.+. .+.++++|+.|++++|... ....+..+++|++|++++| .++.++... +.
T Consensus 166 ~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~------~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~ 228 (440)
T 3zyj_A 166 DLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLR------EIPNLTPLIKLDELDLSGN--HLSAIRPGS------FQ 228 (440)
T ss_dssp ECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCS------SCCCCTTCSSCCEEECTTS--CCCEECTTT------TT
T ss_pred CCCCCCCcceeCcc---hhhcccccCeecCCCCcCc------cccccCCCcccCEEECCCC--ccCccChhh------hc
Confidence 66655555443332 3445556666666655422 1123556677777777775 454443221 23
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.+++|+.|+++++ .++.++. .+..+++|++|++++ ++++.++...+ +++|++|+++++|
T Consensus 229 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 5677777777773 4555543 566777777777777 57777766432 5677777777654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-16 Score=162.40 Aligned_cols=198 Identities=22% Similarity=0.247 Sum_probs=100.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|. ++.++. .+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEE
Confidence 444444444443333333344445555555555543 222222 2444555555555554 23333332 2233455555
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++|+.++.+.+. .+..+++|+.|++++|... ....+..+++|++|++++| .+..++... +.
T Consensus 177 ~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~------~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~ 239 (452)
T 3zyi_A 177 DLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIK------DMPNLTPLVGLEELEMSGN--HFPEIRPGS------FH 239 (452)
T ss_dssp ECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCS------SCCCCTTCTTCCEEECTTS--CCSEECGGG------GT
T ss_pred eCCCCCCccccChh---hccCCCCCCEEECCCCccc------ccccccccccccEEECcCC--cCcccCccc------cc
Confidence 55555444443222 3444555555555555321 1123455667777777765 444443221 23
Q ss_pred CCCccceEecccCcccccc-ccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 523 LPASLTTLWISRFPNLERL-SSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.+++|+.|++++| .+..+ +..+..+++|++|++++ ++++.++...+ +++|++|+++++|
T Consensus 240 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 5667777777763 34444 33566677777777777 56666666432 5677777777654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=162.96 Aligned_cols=131 Identities=29% Similarity=0.293 Sum_probs=62.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++|+.|.+.++.... ++. .+++|++|++++|. ++.++. .+++|++|++++|.. +.+|.
T Consensus 61 ~~L~~L~L~~N~l~~----lp~----~l~~L~~L~Ls~N~-l~~lp~------------~l~~L~~L~Ls~N~l-~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQ-LTSLPV------------LPPGLLELSIFSNPL-THLPA 118 (622)
T ss_dssp TTCSEEEECSCCCSC----CCC----CCTTCCEEEECSCC-CSCCCC------------CCTTCCEEEECSCCC-CCCCC
T ss_pred CCCcEEEecCCCCCC----CCC----cCCCCCEEEcCCCc-CCcCCC------------CCCCCCEEECcCCcC-CCCCC
Confidence 456666665543322 111 34566666666543 443332 115566666665543 44443
Q ss_pred ccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCc
Q 007138 221 SSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSL 300 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L 300 (616)
.+++|++|++++| .++.+|. .+++|++|++++|. +..++. ..++|+.|+++++ .++.++ ..+++|
T Consensus 119 ---~l~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~l~~-----~~~~L~~L~L~~N-~l~~l~--~~~~~L 183 (622)
T 3g06_A 119 ---LPSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQ-LASLPA-----LPSELCKLWAYNN-QLTSLP--MLPSGL 183 (622)
T ss_dssp ---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSCCC--CCCTTC
T ss_pred ---CCCCcCEEECCCC-CCCcCCC--CCCCCCEEECcCCc-CCCcCC-----ccCCCCEEECCCC-CCCCCc--ccCCCC
Confidence 3455666666555 3444543 23556666665553 333332 1244555555543 233333 333445
Q ss_pred cEEEEecC
Q 007138 301 KQLSISDC 308 (616)
Q Consensus 301 ~~L~l~~~ 308 (616)
+.|++++|
T Consensus 184 ~~L~Ls~N 191 (622)
T 3g06_A 184 QELSVSDN 191 (622)
T ss_dssp CEEECCSS
T ss_pred cEEECCCC
Confidence 55555444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=154.93 Aligned_cols=253 Identities=17% Similarity=0.131 Sum_probs=135.4
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++|+.|.+.+..-.. .+...+..+++|++|+++++. ++.+++. .+..+ ++|++|++++|.. +.+|.
T Consensus 52 ~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNG-INTIEED----SFSSL----GSLEHLDLSYNYL-SNLSS 117 (353)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCC-SSCCH
T ss_pred ccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCc-cCccCHh----hcCCC----CCCCEEECCCCcC-CcCCH
Confidence 466666666544322 344455667777777777653 4444332 23444 6677777777655 44444
Q ss_pred c-cCCCCCccEEEEcCCCCCCCCCC---CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccc--c
Q 007138 221 S-SLSLSSLREIEICKCSSLVSFPE---VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA--V 294 (616)
Q Consensus 221 ~-~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~ 294 (616)
. ++.+++|++|++++| .++.++. +..+++|++|++++|..+..++.... ..+++|++|+++++. +..+.. .
T Consensus 118 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~l 194 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASD-LQSYEPKSL 194 (353)
T ss_dssp HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT-CCEECTTTT
T ss_pred hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCC-cCccCHHHH
Confidence 3 666777777777776 3555554 34467777777776654544432211 344666666666553 333211 1
Q ss_pred CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecC
Q 007138 295 QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 374 (616)
Q Consensus 295 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~ 374 (616)
..+++|+.|+++++. ++.+ +..... .+++|++|++++
T Consensus 195 ~~l~~L~~L~l~~n~-l~~~--~~~~~~----~~~~L~~L~L~~------------------------------------ 231 (353)
T 2z80_A 195 KSIQNVSHLILHMKQ-HILL--LEIFVD----VTSSVECLELRD------------------------------------ 231 (353)
T ss_dssp TTCSEEEEEEEECSC-STTH--HHHHHH----HTTTEEEEEEES------------------------------------
T ss_pred hccccCCeecCCCCc-cccc--hhhhhh----hcccccEEECCC------------------------------------
Confidence 334455555555552 3332 211110 134455555544
Q ss_pred CCCchhhhh---hccCCCCccEEEccccccc----ccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccC
Q 007138 375 CSKLESIAE---RLDNNTSLETISIERCGNL----KILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISD 446 (616)
Q Consensus 375 ~~~~~~~~~---~~~~~~~L~~L~l~~~~~l----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~ 446 (616)
|...+..+. .....+.++.++++++... ..+|..+..+++|+.|++++| .+..+|... ..+++|++|++++
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence 322211110 0112335555555554322 235666777888888888887 556777664 4566888888888
Q ss_pred Ccccccchh
Q 007138 447 CKRLEGGFH 455 (616)
Q Consensus 447 c~~l~~~~~ 455 (616)
+ .+++..|
T Consensus 311 N-~~~~~~~ 318 (353)
T 2z80_A 311 N-PWDCSCP 318 (353)
T ss_dssp S-CBCCCHH
T ss_pred C-CccCcCC
Confidence 4 5655544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=158.28 Aligned_cols=220 Identities=18% Similarity=0.206 Sum_probs=118.1
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
+++++|++++|......+..++.+++|++|++++| .++.++ .+..+++|++|++++|. +..++.... ..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCCCE
Confidence 34444454444432222334444445555555444 233332 22234445555554443 333332211 23344455
Q ss_pred EEeccCCCCcccccc--CCCCCccEEEEecCCCCCcccccc-cccccccccCCCccEEeccCCCCcccccccCCCccccc
Q 007138 280 LSIHGCRSLTYIAAV--QLPPSLKQLSISDCDNIRTLTVEE-GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLE 356 (616)
Q Consensus 280 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 356 (616)
|+++++. +..++.. ..+++|+.|++++|..++.+ +. .+.. +++|++|+++++ +++.+ + .+.
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i--~~~~~~~-----l~~L~~L~L~~n-~l~~~-~------~~~ 215 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYI--SEGAFEG-----LFNLKYLNLGMC-NIKDM-P------NLT 215 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE--CTTTTTT-----CTTCCEEECTTS-CCSSC-C------CCT
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcccc--ChhhccC-----CCCCCEEECCCC-ccccc-c------ccc
Confidence 5544432 3333321 23445555555555555444 22 1222 566777777763 33331 1 122
Q ss_pred ccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CC
Q 007138 357 SLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LP 435 (616)
Q Consensus 357 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~ 435 (616)
.+ ++|+.|++++|...+..+..+..+++|+.|++++|......+..+..+++|+.|++++| .+..++... ..
T Consensus 216 ~l------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 288 (452)
T 3zyi_A 216 PL------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTP 288 (452)
T ss_dssp TC------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTT
T ss_pred cc------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhcc
Confidence 22 67888888888766666777778888888888887755555666778888888888887 555665544 34
Q ss_pred CCCceEEEccCC
Q 007138 436 CAKLRRLDISDC 447 (616)
Q Consensus 436 ~~~L~~L~l~~c 447 (616)
+++|+.|+++++
T Consensus 289 l~~L~~L~L~~N 300 (452)
T 3zyi_A 289 LRYLVELHLHHN 300 (452)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCCEEEccCC
Confidence 567888888874
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=151.48 Aligned_cols=200 Identities=22% Similarity=0.189 Sum_probs=114.7
Q ss_pred CcccEEEecCCCCch--hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCC--CCCCCCCce
Q 007138 365 PSLKSLYVYGCSKLE--SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE--GGLPCAKLR 440 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~ 440 (616)
++|++|++++|.... ..+..+..+++|+.|++++|. +..++..+..+++|++|++++| .+..++. ....+++|+
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCC
Confidence 444445554443221 112333445566666666554 3345555555666666666655 3333332 233444666
Q ss_pred EEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCC
Q 007138 441 RLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTA 520 (616)
Q Consensus 441 ~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~ 520 (616)
+|++++| .+++..+. .+..+++|+.|++++|.... ...+..+..+++|++|++++| .++.++...
T Consensus 130 ~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------ 194 (306)
T 2z66_A 130 YLDISHT-HTRVAFNG---IFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQC--QLEQLSPTA------ 194 (306)
T ss_dssp EEECTTS-CCEECSTT---TTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTS--CCCEECTTT------
T ss_pred EEECCCC-cCCccchh---hcccCcCCCEEECCCCcccc---ccchhHHhhCcCCCEEECCCC--CcCCcCHHH------
Confidence 6666663 34444332 34555666666666654211 112345677888888888886 555553221
Q ss_pred CCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCC---CcCCcceEEEcCCc
Q 007138 521 LPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKG---LPSSLLQLQIYCCP 583 (616)
Q Consensus 521 ~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~ 583 (616)
+..+++|++|++++| .++.++. .+..+++|++|++++ +.+...+... .+++|++|++++++
T Consensus 195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTT-SCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCC-CCCcccCHHHHHhhhccCCEEEccCCC
Confidence 235788899999884 4666654 577788999999998 5666654432 23588999998875
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=151.81 Aligned_cols=201 Identities=19% Similarity=0.235 Sum_probs=113.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc-CCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF-PEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 443 (616)
+++++|+++++......+..+..+++|+.|++++|......+..+..+++|++|++++|..+..+ +.....+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45555555555443333334555566666666665433333445556666666666665434444 22233445666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++| .+++..+. .+.++++|+.|++++|... ......+..+++|++|++++| .++.++... +..
T Consensus 112 l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~------~~~ 175 (285)
T 1ozn_A 112 LDRC-GLQELGPG---LFRGLAALQYLYLQDNALQ----ALPDDTFRDLGNLTHLFLHGN--RISSVPERA------FRG 175 (285)
T ss_dssp CTTS-CCCCCCTT---TTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSS--CCCEECTTT------TTT
T ss_pred CCCC-cCCEECHh---HhhCCcCCCEEECCCCccc----ccCHhHhccCCCccEEECCCC--cccccCHHH------hcC
Confidence 6653 44444332 3455566666666655421 111223566777777777775 555555431 235
Q ss_pred CCccceEecccCcccccc-ccccccCccccEEEecCCCCCcccCCC--CCcCCcceEEEcCCc
Q 007138 524 PASLTTLWISRFPNLERL-SSSIVDLQNLTELVLVNCPKLKYFPEK--GLPSSLLQLQIYCCP 583 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 583 (616)
+++|++|++++|. +..+ |..+..+++|++|++++ +.++.++.. ..+++|++|++++++
T Consensus 176 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCCc-ccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 6778888888744 4444 55677777888888887 566666642 335778888887765
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-15 Score=155.28 Aligned_cols=224 Identities=17% Similarity=0.234 Sum_probs=173.2
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 443 (616)
++++.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 67899999998766655677889999999999998755444567899999999999998 66677664 44567999999
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++ +.++...+. .+.++++|+.|+++++.... ......+..+++|++|++++| .++.++... .
T Consensus 143 L~~-N~i~~~~~~---~~~~l~~L~~L~l~~~~~l~---~i~~~~~~~l~~L~~L~L~~n--~l~~~~~~~--------~ 205 (440)
T 3zyj_A 143 LRN-NPIESIPSY---AFNRIPSLRRLDLGELKRLS---YISEGAFEGLSNLRYLNLAMC--NLREIPNLT--------P 205 (440)
T ss_dssp CCS-CCCCEECTT---TTTTCTTCCEEECCCCTTCC---EECTTTTTTCSSCCEEECTTS--CCSSCCCCT--------T
T ss_pred CCC-CcccccCHH---HhhhCcccCEeCCCCCCCcc---eeCcchhhcccccCeecCCCC--cCccccccC--------C
Confidence 999 567766543 67889999999999854211 122335788999999999997 777777543 6
Q ss_pred CCccceEecccCcccccc-ccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCchhhhhhhcCCCCccccc
Q 007138 524 PASLTTLWISRFPNLERL-SSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCPLIAEKCRKDGGQYWDLL 600 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i 600 (616)
+++|++|++++| .++.+ +..+..+++|++|++++ +.++.++...+ +++|++|++++|. +... ....+..+
T Consensus 206 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~----~~~~~~~l 278 (440)
T 3zyj_A 206 LIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNN-LTLL----PHDLFTPL 278 (440)
T ss_dssp CSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSC-CCCC----CTTTTSSC
T ss_pred CcccCEEECCCC-ccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCC-CCcc----ChhHhccc
Confidence 899999999995 57766 55888999999999999 78888877543 7899999999985 3221 12224557
Q ss_pred CCccEEEEcCeec
Q 007138 601 THIPHVVIDDKRV 613 (616)
Q Consensus 601 ~~i~~~~~~~~~~ 613 (616)
.++..+.+.++.+
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 7888888877754
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=148.44 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=31.8
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccC
Q 007138 229 REIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGC 285 (616)
Q Consensus 229 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 285 (616)
+.++.+++ .++.+|. ...++|++|++++|. ++.++.... ..+++|++|+++++
T Consensus 10 ~~l~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n 62 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPT-GIPSSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSN 62 (306)
T ss_dssp TEEECCSS-CCSSCCS-CCCTTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSS
T ss_pred CEEEcCCC-CcccCCC-CCCCCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCC
Confidence 35566654 4666664 335678888887776 555554321 34566666666654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=141.48 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=107.1
Q ss_pred CcccEEEecCCCCchhhhh-hccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCCCCCCCce--
Q 007138 365 PSLKSLYVYGCSKLESIAE-RLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLR-- 440 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-- 440 (616)
++|++|++++|..++.++. .+..+++|+.|++++|..++.++ ..+..+++|++|++++| .+..+|. ...+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccc
Confidence 4455555555432333332 34455555555555533344443 23455555555555555 2334443 22333444
Q ss_pred -EEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCcc-EEEEecCCCccccccccccccC
Q 007138 441 -RLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLR-HLTIRGCDDDMVSFPLEDKRLG 518 (616)
Q Consensus 441 -~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~i~~~~~~l~~l~~~~~~~~ 518 (616)
+|++++++.++++.+ ..+..+++|+ +|++++| .++.++...
T Consensus 133 ~~L~l~~N~~l~~i~~-------------------------------~~~~~l~~L~~~L~l~~n--~l~~i~~~~---- 175 (239)
T 2xwt_C 133 FILEITDNPYMTSIPV-------------------------------NAFQGLCNETLTLKLYNN--GFTSVQGYA---- 175 (239)
T ss_dssp EEEEEESCTTCCEECT-------------------------------TTTTTTBSSEEEEECCSC--CCCEECTTT----
T ss_pred cEEECCCCcchhhcCc-------------------------------ccccchhcceeEEEcCCC--CCcccCHhh----
Confidence 555555334443322 2467788888 8999886 666666643
Q ss_pred CCCCCCCccceEecccCcccccccc-ccccC-ccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchh
Q 007138 519 TALPLPASLTTLWISRFPNLERLSS-SIVDL-QNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 519 ~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 585 (616)
+ ..++|++|++++|+.++.++. .+..+ ++|++|++++ +.++.+|.. .+++|++|++.+++.+
T Consensus 176 --~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 --F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp --T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred --c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 1 237899999999656888865 57778 9999999999 888888876 5688999999887653
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=158.64 Aligned_cols=190 Identities=14% Similarity=0.065 Sum_probs=114.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|++|++++|...+..+ +..+++|+.|++++|. ++.++ ..++|+.|++++| .+..++...+ ++|+.|++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~~N-~l~~~~~~~l--~~L~~L~L 127 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANN-NISRVSCSRG--QGKKNIYL 127 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSS-CCCCEEECCC--SSCEEEEC
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECcCC-cCCCCCcccc--CCCCEEEC
Confidence 566666666665443333 5566667777776654 33333 2266777777666 3444443333 36777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccc-cccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGF-HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
++ +.+++..|. .++.+++|+.|++++|.... ..+..+ ..+++|++|++++| .+..++... .
T Consensus 128 ~~-N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~~L~Ls~N--~l~~~~~~~--------~ 189 (487)
T 3oja_A 128 AN-NKITMLRDL---DEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYN--FIYDVKGQV--------V 189 (487)
T ss_dssp CS-SCCCSGGGB---CGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTS--CCCEEECCC--------C
T ss_pred CC-CCCCCCCch---hhcCCCCCCEEECCCCCCCC----cChHHHhhhCCcccEEecCCC--ccccccccc--------c
Confidence 66 356555443 34556677777777664221 111122 25677777777776 455554433 4
Q ss_pred CCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCch
Q 007138 524 PASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCPL 584 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~ 584 (616)
+++|+.|++++ +.++.+|+.+..+++|+.|++++ +.+..+|.. ..+++|+.|++++|+.
T Consensus 190 l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 190 FAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence 67778888877 45666766677777788888877 667777764 3357777787777653
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-14 Score=141.74 Aligned_cols=173 Identities=21% Similarity=0.206 Sum_probs=101.8
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++++.|++++|......+..+..+++|+.|++++|. ++.++.. ..+++|+.|++++| .+..+|.....+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 567777887776655555667777888888888765 4445433 67778888888877 55667766556667888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.+++..+. .+..+++|++|++++| .++.++... +..+
T Consensus 108 ~~-N~l~~l~~~-------------------------------~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l 147 (290)
T 1p9a_G 108 SF-NRLTSLPLG-------------------------------ALRGLGELQELYLKGN--ELKTLPPGL------LTPT 147 (290)
T ss_dssp CS-SCCCCCCSS-------------------------------TTTTCTTCCEEECTTS--CCCCCCTTT------TTTC
T ss_pred CC-CcCcccCHH-------------------------------HHcCCCCCCEEECCCC--CCCccChhh------cccc
Confidence 77 456554432 3344555555555554 344443321 1234
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC-cCCcceEEEcCC
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL-PSSLLQLQIYCC 582 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c 582 (616)
++|+.|++++ +.++.+|. .+..+++|++|++++ +.++.+|.... .++|+.++++++
T Consensus 148 ~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 148 PKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCC
Confidence 5555555555 34555554 234455555555555 45555555322 345555555544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-16 Score=153.59 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred cccCCccEEEEecCCCcccccc-ccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFP-LEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
..+++|++|++++| .+...+ ... +..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|..
T Consensus 225 ~~l~~L~~L~Ls~N--~l~~~~~~~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~ 292 (312)
T 1wwl_A 225 AARVQLQGLDLSHN--SLRDAAGAPS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSP 292 (312)
T ss_dssp HTTCCCSEEECTTS--CCCSSCCCSC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCT
T ss_pred hcCCCCCEEECCCC--cCCcccchhh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhH
Confidence 34567777777765 444432 111 11356777777777 34667765444 6777777777 677777664
Q ss_pred CCcCCcceEEEcCCc
Q 007138 569 GLPSSLLQLQIYCCP 583 (616)
Q Consensus 569 ~~~~~L~~L~i~~c~ 583 (616)
..+++|++|++++++
T Consensus 293 ~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 293 DELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSCEEEEEECTTCT
T ss_pred hhCCCCCEEeccCCC
Confidence 446777777777665
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=137.49 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=43.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCcc---EEEcccccccccccc-cccCCCCCc-EEEeccCCCCcccCCCCCCCCCc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLE---TISIERCGNLKILPS-GLHNLRQLQ-GIKIWNCGNLVSFPEGGLPCAKL 439 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~-~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L 439 (616)
++|++|++++|... .+|. +..+++|+ .|++++|..++.++. .+..+++|+ .|++++| .+..+|...+..++|
T Consensus 105 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 105 PLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp TTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred CCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 44455555544322 2333 44444554 666666534444443 355666666 6666665 344555544443456
Q ss_pred eEEEccCCccccc
Q 007138 440 RRLDISDCKRLEG 452 (616)
Q Consensus 440 ~~L~l~~c~~l~~ 452 (616)
++|++++|..+++
T Consensus 182 ~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 182 DAVYLNKNKYLTV 194 (239)
T ss_dssp EEEECTTCTTCCE
T ss_pred CEEEcCCCCCccc
Confidence 6666666433543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-14 Score=136.26 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=46.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++| .+..++.. ...+++|++|+
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEe
Confidence 45555555555333222223555667777777776644444566666777777777776 34444322 23445777777
Q ss_pred ccCC
Q 007138 444 ISDC 447 (616)
Q Consensus 444 l~~c 447 (616)
++++
T Consensus 232 l~~N 235 (285)
T 1ozn_A 232 LNDN 235 (285)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 7773
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=142.88 Aligned_cols=199 Identities=18% Similarity=0.147 Sum_probs=103.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC-CCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP-EGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 443 (616)
+++++|++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++|. +..++ .....+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence 445666666554433323345555666666666654322222345556666666666653 33333 2233445666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++| .+++..+. .++++++|+.|++++|.... ...+..+..+++|++|++++| .++.++... +..
T Consensus 107 l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~---~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~ 171 (276)
T 2z62_A 107 AVET-NLASLENF---PIGHLKTLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSN--KIQSIYCTD------LRV 171 (276)
T ss_dssp CTTS-CCCCSTTC---CCTTCTTCCEEECCSSCCCC---CCCCGGGGGCTTCCEEECCSS--CCCEECGGG------GHH
T ss_pred CCCC-CccccCch---hcccCCCCCEEECcCCccce---ecCchhhccCCCCCEEECCCC--CCCcCCHHH------hhh
Confidence 6653 34443221 24555666666666554211 001234556677777777765 444443321 012
Q ss_pred CCccc----eEecccCccccccccccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcC
Q 007138 524 PASLT----TLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYC 581 (616)
Q Consensus 524 ~~~L~----~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~ 581 (616)
+++|+ .|++++ +.++.++.......+|++|++++ +.++.++... .+++|++|++++
T Consensus 172 l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 172 LHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp HHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred hhhccccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 33344 667776 44666655444455677777777 5566666642 256777777774
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=142.66 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=92.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCC-CCCcEEEeccCCCCcccCCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNL-RQLQGIKIWNCGNLVSFPEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 442 (616)
++|++|++++|......+..+....++..+++.++..+..++. .+..+ ..++.|++++| .++.++...+...+|+.+
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDEL 182 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEE
T ss_pred cccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHH
Confidence 4444444444432221122223334566666666666666554 23333 35777888776 567777777766678888
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++.+++.++.+.++ .+..+++|++|++++| .++.+|...
T Consensus 183 ~l~~~n~l~~i~~~-------------------------------~f~~l~~L~~LdLs~N--~l~~lp~~~-------- 221 (350)
T 4ay9_X 183 NLSDNNNLEELPND-------------------------------VFHGASGPVILDISRT--RIHSLPSYG-------- 221 (350)
T ss_dssp ECTTCTTCCCCCTT-------------------------------TTTTEECCSEEECTTS--CCCCCCSSS--------
T ss_pred hhccCCcccCCCHH-------------------------------HhccCcccchhhcCCC--CcCccChhh--------
Confidence 88877777654332 4566677777777775 666666543
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
+.+|+.|.+.++++++.+| .+..+++|+.+++.+
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 5677777777777777777 466777777777754
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-14 Score=135.24 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=92.4
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccccc-ccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
+++++|+++++......+..+..+++|+.|++++|. ++.++.. +..+++|++|++++| .+..++... ..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 456666666664433333345666677777776654 3344433 356677777777766 344444433 344567777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++ +.+++..+. .+..+++|++|++++| .++.++... +.
T Consensus 115 ~l~~-n~l~~~~~~-------------------------------~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~ 154 (270)
T 2o6q_A 115 RLDR-NQLKSLPPR-------------------------------VFDSLTKLTYLSLGYN--ELQSLPKGV------FD 154 (270)
T ss_dssp ECCS-SCCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCCCCCTTT------TT
T ss_pred ECCC-CccCeeCHH-------------------------------HhCcCcCCCEEECCCC--cCCccCHhH------cc
Confidence 7766 345444332 2344555555555554 344443321 12
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.+++|++|++++| .++.++. .+..+++|++|++++ +.++.++...+ +++|++|+++++|
T Consensus 155 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 3555566666552 3444443 345555666666665 35555554322 4556666665543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=143.47 Aligned_cols=207 Identities=18% Similarity=0.124 Sum_probs=116.4
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCC-----CCccEEEccccccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNN-----TSLETISIERCGNL 402 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~l 402 (616)
+++|++|+++++ .++...+...+. ..+ ++|++|++++|...+. |..+..+ ++|+.|++++|...
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~---~~l------~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLE---ATG------PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSS---CCS------CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred cCCccEEEccCC-cccchhHHHHHH---hcC------CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 577777777773 333212221110 222 6777777777755443 4444433 67777777776644
Q ss_pred ccccccccCCCCCcEEEeccCCCCcc--cCCCC--CCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHH
Q 007138 403 KILPSGLHNLRQLQGIKIWNCGNLVS--FPEGG--LPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEI 478 (616)
Q Consensus 403 ~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 478 (616)
+..+..+..+++|++|++++|..... ++... ..+++|++|++++| .+++........+.++++|+.|++++|...
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 44445667777777777777643322 11111 33447777777773 455321111123456677777777777522
Q ss_pred HHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecC
Q 007138 479 WKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 479 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
. ......+..+++|++|++++| .++.+|... .++|++|++++ +.++.+|. +..+++|++|++++
T Consensus 242 ~---~~~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~---------~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 242 D---AAGAPSCDWPSQLNSLNLSFT--GLKQVPKGL---------PAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp S---SCCCSCCCCCTTCCEEECTTS--CCSSCCSSC---------CSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT
T ss_pred c---ccchhhhhhcCCCCEEECCCC--ccChhhhhc---------cCCceEEECCC-CCCCCChh-HhhCCCCCEEeccC
Confidence 1 000123344667777777775 555665543 26777777777 45666664 66777777777777
Q ss_pred CCCCc
Q 007138 559 CPKLK 563 (616)
Q Consensus 559 c~~l~ 563 (616)
+.++
T Consensus 306 -N~l~ 309 (312)
T 1wwl_A 306 -NPFL 309 (312)
T ss_dssp -CTTT
T ss_pred -CCCC
Confidence 4444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-15 Score=149.12 Aligned_cols=200 Identities=17% Similarity=0.238 Sum_probs=89.0
Q ss_pred CCCcEEEccCCCCCcccccccCCC--CCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccc--cchhhccCCCCCc
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSL--SSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKS--LPEAWMCDTNSSL 277 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L 277 (616)
..++.++++++... +..+..+ ++++.|+++++......+....+++|++|++++|. +.. ++..+ ..+++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~--~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGIL--SQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHH--TTBCCC
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHH--hhCCCC
Confidence 34666666665432 2333334 56666666665322233344456666777766665 322 22221 344566
Q ss_pred cEEEeccCCCCcc-cc-ccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccc
Q 007138 278 EILSIHGCRSLTY-IA-AVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355 (616)
Q Consensus 278 ~~L~l~~~~~l~~-~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 355 (616)
++|++++|. +.. .+ ....+++|+.|++++|..++...++..+.. +++|++|++++|..+++ ..++..+
T Consensus 121 ~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-----~~~L~~L~l~~~~~l~~----~~~~~~~ 190 (336)
T 2ast_B 121 QNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-----CSRLDELNLSWCFDFTE----KHVQVAV 190 (336)
T ss_dssp SEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-----CTTCCEEECCCCTTCCH----HHHHHHH
T ss_pred CEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-----CCCCCEEcCCCCCCcCh----HHHHHHH
Confidence 666666553 221 11 112344555555555544443211222222 44555555555434332 0111112
Q ss_pred cccccCCCCC-cccEEEecCCC--Cc-hhhhhhccCCCCccEEEccccccc-ccccccccCCCCCcEEEeccC
Q 007138 356 ESLEVGNLPP-SLKSLYVYGCS--KL-ESIAERLDNNTSLETISIERCGNL-KILPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 356 ~~l~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~l~~l~~L~~L~l~~~ 423 (616)
..+ + +|++|++++|. .. ..++..+..+++|+.|++++|..+ ...+..+..+++|++|++++|
T Consensus 191 ~~l------~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 191 AHV------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHS------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred Hhc------ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 222 3 45555555542 11 233333444455555555554422 223334444445555555444
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.7e-14 Score=138.86 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=140.1
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS 407 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 407 (616)
+++|++|+++++ .++. ++ .+..+ ++|++|++++|... .++. +..+++|+.|++++|. ++.++
T Consensus 40 l~~L~~L~l~~~-~i~~------l~-~~~~l------~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~-l~~~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT------IE-GVQYL------NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNP-LKNVS- 101 (308)
T ss_dssp HHTCCEEECTTS-CCCC------CT-TGGGC------TTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCC-CSCCG-
T ss_pred cCCcCEEEeeCC-CccC------ch-hhhcc------CCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCc-CCCch-
Confidence 688999999885 3443 11 23333 88999999988544 4444 7888899999999876 55554
Q ss_pred cccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCc
Q 007138 408 GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGR 487 (616)
Q Consensus 408 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 487 (616)
.+..+++|++|++++| .+..++. ...+++|++|++++| .+++..+ +..+++|+.|++++|.... ..
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~l~~n~l~~------~~ 167 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-----LAGLTNLQYLSIGNAQVSD------LT 167 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSSCCCC------CG
T ss_pred hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-----ccCCCCccEEEccCCcCCC------Ch
Confidence 5788899999999988 4555554 445568999999884 6666533 6788888999988885321 12
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+..+++|++|++++| .++.++... .+++|++|++++| .+..++ .+..+++|+.|++++ +.+...|.
T Consensus 168 ~l~~l~~L~~L~l~~n--~l~~~~~l~--------~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 168 PLANLSKLTTLKADDN--KISDISPLA--------SLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp GGTTCTTCCEEECCSS--CCCCCGGGG--------GCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE-EEEECCCE
T ss_pred hhcCCCCCCEEECCCC--ccCcChhhc--------CCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccC-CeeecCCe
Confidence 3677888889998886 566665533 5788899999884 577776 477888889998888 55666544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=137.40 Aligned_cols=223 Identities=20% Similarity=0.194 Sum_probs=132.2
Q ss_pred CCCcEEEccCCCCCccccc-ccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
+++++|++++|.. +.+|. .|+++++|++|++++|...+.++. +..+++++.+...++..+..++.... ..+++|+
T Consensus 30 ~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f-~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB-CCCTTCC
T ss_pred CCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh-hhccccc
Confidence 5667777776654 55554 456667777777766644444442 22345555443333333444432211 2334445
Q ss_pred EEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccccccc
Q 007138 279 ILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESL 358 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l 358 (616)
.|++ +++ .++.+ +.... ....++..+++.++..+.. .+...+...
T Consensus 108 ~L~l-----------------------~~n-~l~~~--~~~~~----~~~~~l~~l~l~~~~~i~~-l~~~~f~~~---- 152 (350)
T 4ay9_X 108 YLLI-----------------------SNT-GIKHL--PDVHK----IHSLQKVLLDIQDNINIHT-IERNSFVGL---- 152 (350)
T ss_dssp EEEE-----------------------EEE-CCSSC--CCCTT----CCBSSCEEEEEESCTTCCE-ECTTSSTTS----
T ss_pred cccc-----------------------ccc-ccccC--Cchhh----cccchhhhhhhcccccccc-ccccchhhc----
Confidence 4444 444 22222 11100 0123455566655555554 222222111
Q ss_pred ccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCC
Q 007138 359 EVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCA 437 (616)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 437 (616)
+..++.|++++|. +..++.......+|+.+++.++..++.+|. .+..+++|+.|++++| .++.+|...+.
T Consensus 153 -----~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~-- 223 (350)
T 4ay9_X 153 -----SFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE-- 223 (350)
T ss_dssp -----BSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCT--
T ss_pred -----chhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhc--
Confidence 0457788888874 445666666677899999998888888886 4588999999999988 67888887766
Q ss_pred CceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 438 KLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 438 ~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+|+.|.+.+++.++..+ .+.++++|+.+++..+
T Consensus 224 ~L~~L~~l~~~~l~~lP-----~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLP-----TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCCEEECTTCTTCCCCC-----CTTTCCSCCEEECSCH
T ss_pred cchHhhhccCCCcCcCC-----CchhCcChhhCcCCCC
Confidence 89999988888776542 3566777777777654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9.9e-15 Score=146.61 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=120.1
Q ss_pred CcccEEEecCCCCchh-hhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcc--cCCCCCCCCCceE
Q 007138 365 PSLKSLYVYGCSKLES-IAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVS--FPEGGLPCAKLRR 441 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~ 441 (616)
++|++|++++|..... ++..+..+++|+.|++++|......+..+..+++|++|++++|..++. ++.....+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 6677777777654433 566666777777777777764445555666677777777777744442 3333334457777
Q ss_pred EEccCCcccccc-hhhhHhhhcccc-cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccc-cccccccccC
Q 007138 442 LDISDCKRLEGG-FHRYMIALHNLT-NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMV-SFPLEDKRLG 518 (616)
Q Consensus 442 L~l~~c~~l~~~-~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~-~l~~~~~~~~ 518 (616)
|++++|..+++. ++ ..+.+++ +|+.|++++|...... ...+..+..+++|++|++++| ..++ ..+...
T Consensus 173 L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~-~~l~~~~~~~l---- 243 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDS-VMLKNDCFQEF---- 243 (336)
T ss_dssp EECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTC-TTCCGGGGGGG----
T ss_pred EcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCC-CcCCHHHHHHH----
Confidence 777776566543 22 2456677 7777777776310000 000113456788888888885 2222 222222
Q ss_pred CCCCCCCccceEecccCccccccc-cccccCccccEEEecCCCCCcccCCCCC---cCCcceEEEcCCchhhhh
Q 007138 519 TALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKGL---PSSLLQLQIYCCPLIAEK 588 (616)
Q Consensus 519 ~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~ 588 (616)
..+++|++|++++|..+.... ..+..+++|++|++++| ++...+ ...+..|+++++ .+...
T Consensus 244 ---~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 244 ---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp ---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCT
T ss_pred ---hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCccc
Confidence 146888888888876433221 14667888888888886 444322 234777777544 34433
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-13 Score=133.73 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 260 (616)
++|++|++++|.. +.++. +..+++|++|++++|. ++.++.+..+++|++|++++|.
T Consensus 63 ~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 63 NNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp TTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC
T ss_pred CCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC
Confidence 4555555555433 33333 4445555555555542 4444444444444444444443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=138.96 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=51.0
Q ss_pred cccCCccEEEEecCCCccccc-cccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSF-PLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
..+++|++|++++| .+..+ |.... ....+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|..
T Consensus 221 ~~l~~L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~ 290 (310)
T 4glp_A 221 AAGVQPHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQP 290 (310)
T ss_dssp HHTCCCSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCT
T ss_pred hcCCCCCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchh
Confidence 44566777777765 44443 32221 011236777777777 45667765443 6777777777 667776655
Q ss_pred CCcCCcceEEEcCCc
Q 007138 569 GLPSSLLQLQIYCCP 583 (616)
Q Consensus 569 ~~~~~L~~L~i~~c~ 583 (616)
..+++|++|++++++
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 456777777777765
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=131.96 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=94.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCC-CCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE-GGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. +..++. ....+++|++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEE
Confidence 445555555543332222334455555555555554333333345555555555555552 233322 223344556666
Q ss_pred ccCCcccccc-hhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCcc----EEEEecCCCccccccccccccC
Q 007138 444 ISDCKRLEGG-FHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLR----HLTIRGCDDDMVSFPLEDKRLG 518 (616)
Q Consensus 444 l~~c~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~L~i~~~~~~l~~l~~~~~~~~ 518 (616)
+++ +.+++. +|. .+.++++|+.|++++|.... .....+..+++|+ .|++++| .+..++...
T Consensus 131 l~~-n~l~~~~l~~---~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~---- 196 (276)
T 2z62_A 131 VAH-NLIQSFKLPE---YFSNLTNLEHLDLSSNKIQS----IYCTDLRVLHQMPLLNLSLDLSLN--PMNFIQPGA---- 196 (276)
T ss_dssp CCS-SCCCCCCCCG---GGGGCTTCCEEECCSSCCCE----ECGGGGHHHHTCTTCCEEEECCSS--CCCEECTTS----
T ss_pred CcC-CccceecCch---hhccCCCCCEEECCCCCCCc----CCHHHhhhhhhccccceeeecCCC--cccccCccc----
Confidence 655 234332 232 34455566666666553211 0111333444454 7888876 566665543
Q ss_pred CCCCCCCccceEecccCcccccccc-ccccCccccEEEecCC
Q 007138 519 TALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNC 559 (616)
Q Consensus 519 ~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 559 (616)
....+|+.|++++| .++.+|. .+..+++|++|+++++
T Consensus 197 ---~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 197 ---FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ---SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ---cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 13458999999984 5888876 4578999999999984
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-13 Score=128.62 Aligned_cols=193 Identities=20% Similarity=0.208 Sum_probs=109.4
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
+++++++++++.. +.+|..+. ++++.|++++|. ++.++ .+..+++|++|++++|. +..++.
T Consensus 10 ~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------ 72 (290)
T 1p9a_G 10 ASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV------------ 72 (290)
T ss_dssp TTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC------------
T ss_pred CCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccC------------
Confidence 5667777766543 56665442 566666776663 44433 23445666666666554 333332
Q ss_pred EEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccc
Q 007138 280 LSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLE 359 (616)
Q Consensus 280 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 359 (616)
...+++|+.|+++++ .++.+ +..+.. +++|++|++++ +.++. .+. ..+..+
T Consensus 73 --------------~~~l~~L~~L~Ls~N-~l~~l--~~~~~~-----l~~L~~L~l~~-N~l~~-l~~----~~~~~l- 123 (290)
T 1p9a_G 73 --------------DGTLPVLGTLDLSHN-QLQSL--PLLGQT-----LPALTVLDVSF-NRLTS-LPL----GALRGL- 123 (290)
T ss_dssp --------------CSCCTTCCEEECCSS-CCSSC--CCCTTT-----CTTCCEEECCS-SCCCC-CCS----STTTTC-
T ss_pred --------------CCCCCcCCEEECCCC-cCCcC--chhhcc-----CCCCCEEECCC-CcCcc-cCH----HHHcCC-
Confidence 233334444544444 33333 332222 45666666666 33332 111 112222
Q ss_pred cCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCCC
Q 007138 360 VGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAK 438 (616)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 438 (616)
++|++|++++|......+..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++| .+..+|...+..++
T Consensus 124 -----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~ 196 (290)
T 1p9a_G 124 -----GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHL 196 (290)
T ss_dssp -----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCC
T ss_pred -----CCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhccccc
Confidence 677777777775544333345667788888888765 445554 3467788888888877 56677777776667
Q ss_pred ceEEEccCC
Q 007138 439 LRRLDISDC 447 (616)
Q Consensus 439 L~~L~l~~c 447 (616)
|+.++++++
T Consensus 197 L~~l~L~~N 205 (290)
T 1p9a_G 197 LPFAFLHGN 205 (290)
T ss_dssp CSEEECCSC
T ss_pred CCeEEeCCC
Confidence 888888774
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-13 Score=127.73 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=88.0
Q ss_pred CcccEEEecCCCCchhhhh-hccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceE
Q 007138 365 PSLKSLYVYGCSKLESIAE-RLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRR 441 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~ 441 (616)
++|++|++++|... .++. .+..+++|+.|++++|.. +.++ ..+..+++|++|++++| .+..++... ..+++|++
T Consensus 61 ~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCE
Confidence 56666666666433 3333 345677777777777653 3343 34567778888888776 444454433 35567888
Q ss_pred EEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCC
Q 007138 442 LDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTAL 521 (616)
Q Consensus 442 L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~ 521 (616)
|++++| .+++..+. .+..+++|++|++++| .++.++... +
T Consensus 138 L~Ls~n-~l~~~~~~-------------------------------~~~~l~~L~~L~L~~n--~l~~~~~~~------~ 177 (270)
T 2o6q_A 138 LSLGYN-ELQSLPKG-------------------------------VFDKLTSLKELRLYNN--QLKRVPEGA------F 177 (270)
T ss_dssp EECCSS-CCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCSCCCTTT------T
T ss_pred EECCCC-cCCccCHh-------------------------------HccCCcccceeEecCC--cCcEeChhH------h
Confidence 888774 55544321 2345566666666654 444444321 2
Q ss_pred CCCCccceEecccCcccccccc-ccccCccccEEEecCC
Q 007138 522 PLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNC 559 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 559 (616)
..+++|++|++++| .++.++. .+..+++|+.|+++++
T Consensus 178 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 178 DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 24566666666663 4555554 3556667777777664
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=149.33 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=57.4
Q ss_pred chhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCC--C-cccccc-------cCCCCCccE
Q 007138 161 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEG--L-VKLPQS-------SLSLSSLRE 230 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~-~~~~~~-------~~~l~~L~~ 230 (616)
....+..+++|++|++++|. +.......+...+..+ ++|++|++++|.. + ..+|.. +..+++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~----~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhC----CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 44556788888888888874 4432222111223333 7888888888632 1 133443 367888888
Q ss_pred EEEcCCCCCCC-----CC-CCCCCCCCcEEEccCCC
Q 007138 231 IEICKCSSLVS-----FP-EVALPSKLKNIWISTCD 260 (616)
Q Consensus 231 L~l~~~~~l~~-----~~-~~~~~~~L~~L~l~~~~ 260 (616)
|++++|. ++. ++ .+..+++|++|++++|.
T Consensus 99 L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 99 VRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp EECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred EECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 8888874 443 22 23346778888887776
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=136.60 Aligned_cols=181 Identities=17% Similarity=0.102 Sum_probs=126.4
Q ss_pred CcccEEEecCCCCchhhh----hhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcc--cCCC--CCCC
Q 007138 365 PSLKSLYVYGCSKLESIA----ERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVS--FPEG--GLPC 436 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~--~~~~ 436 (616)
++|++|++++|......+ ..+..+++|+.|++++|......+..+..+++|++|++++|..... ++.. ...+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 677888888776554322 2345678899999988876555556778889999999998854321 2222 2345
Q ss_pred CCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcccccc---CCccEEEEecCCCcccccccc
Q 007138 437 AKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRF---SSLRHLTIRGCDDDMVSFPLE 513 (616)
Q Consensus 437 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l---~~L~~L~i~~~~~~l~~l~~~ 513 (616)
++|++|++++| .++...+.....++++++|+.|++++|.... ..+..+..+ ++|++|++++| .++.+|..
T Consensus 197 ~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~ 269 (310)
T 4glp_A 197 PAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNSLNLSFA--GLEQVPKG 269 (310)
T ss_dssp CCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCCEECCSS--CCCSCCSC
T ss_pred CCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCc----cchhhHHhccCcCcCCEEECCCC--CCCchhhh
Confidence 68999999985 5654322212235788899999999886321 112234444 79999999997 67777765
Q ss_pred ccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcc
Q 007138 514 DKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 514 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~ 564 (616)
. +++|++|++++ +.++.+|. +..+++|++|++++ |.+.+
T Consensus 270 ~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~-N~l~~ 308 (310)
T 4glp_A 270 L---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDG-NPFLV 308 (310)
T ss_dssp C---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSS-TTTSC
T ss_pred h---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcC-CCCCC
Confidence 4 48999999999 56888874 77899999999999 55543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-13 Score=128.68 Aligned_cols=135 Identities=18% Similarity=0.129 Sum_probs=72.1
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|.. +.++ ..+..+++|+.|++++| .+..++... ..+++|++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 3444444444433322233345566677777766643 3333 33466777777777776 344444433 345577777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++| .+++..+. .+..+++|+.|++++| .+. .
T Consensus 187 ~L~~N-~l~~~~~~-------------------------------~~~~l~~L~~L~l~~N--~~~-----~-------- 219 (272)
T 3rfs_A 187 RLYQN-QLKSVPDG-------------------------------VFDRLTSLQYIWLHDN--PWD-----C-------- 219 (272)
T ss_dssp ECCSS-CCSCCCTT-------------------------------TTTTCTTCCEEECCSS--CBC-----C--------
T ss_pred ECCCC-cCCccCHH-------------------------------HHhCCcCCCEEEccCC--Ccc-----c--------
Confidence 77763 45554332 3455566666666664 111 1
Q ss_pred CCCccceEecccCccccccccccccC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDL 548 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~ 548 (616)
.+++|+.|+++.+.....+|..++.+
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCcHHHHHHHHHHhCCCcccCccccc
Confidence 34566666666655555566544443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-14 Score=148.64 Aligned_cols=247 Identities=17% Similarity=0.128 Sum_probs=147.0
Q ss_pred CCCCccEEEEecCCCCCccc---ccccccccccccCCCccEEeccCC--CCccccccc--CCCcccccccccCCCCCccc
Q 007138 296 LPPSLKQLSISDCDNIRTLT---VEEGIQSSRRYTSCLLEHLDISSC--PSLTCIFSK--NELPATLESLEVGNLPPSLK 368 (616)
Q Consensus 296 ~~~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~--~~~~~~l~~l~~~~~~~~L~ 368 (616)
.+++|+.|++++| .++... ++..+. .+++|++|++++| ..++...|. ..+...+..+ ++|+
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~-----~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~------~~L~ 97 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIA-----SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC------PKLH 97 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTT-----TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC------TTCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHH-----hCCCccEEeCcccccCccccchhHHHHHHHHHHhhC------Cccc
Confidence 3568899999887 344321 112222 3788899988886 333321111 0111112333 7888
Q ss_pred EEEecCCCCch----hhhhhccCCCCccEEEccccccccc----ccccccCC---------CCCcEEEeccCCCC-cccC
Q 007138 369 SLYVYGCSKLE----SIAERLDNNTSLETISIERCGNLKI----LPSGLHNL---------RQLQGIKIWNCGNL-VSFP 430 (616)
Q Consensus 369 ~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l---------~~L~~L~l~~~~~~-~~~~ 430 (616)
+|++++|.... .++..+..+++|+.|++++|..... ++..+..+ ++|++|++++|... ..++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 88888886655 4666777788888888888765322 22233344 78888888887432 1232
Q ss_pred ---CCCCCCCCceEEEccCCcccccc-hhhhHh-hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCC
Q 007138 431 ---EGGLPCAKLRRLDISDCKRLEGG-FHRYMI-ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDD 505 (616)
Q Consensus 431 ---~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 505 (616)
.....+++|++|++++| .+++. +...+. .+.++++|+.|++++|.....+....+..+..+++|++|++++|
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-- 254 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-- 254 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--
T ss_pred HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--
Confidence 12223457888888885 45421 111222 56778888888888887543333333445677788888888886
Q ss_pred ccccc-----cccccccCCCCCCCCccceEecccCccccc-----ccccc-ccCccccEEEecCCCCCcc
Q 007138 506 DMVSF-----PLEDKRLGTALPLPASLTTLWISRFPNLER-----LSSSI-VDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 506 ~l~~l-----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----i~~~~-~~~~~L~~L~l~~c~~l~~ 564 (616)
.+... +.... ...+++|++|++++|. ++. +|..+ .++++|++|++++ +.+..
T Consensus 255 ~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~-N~l~~ 317 (386)
T 2ca6_A 255 LLSARGAAAVVDAFS-----KLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG-NRFSE 317 (386)
T ss_dssp CCCHHHHHHHHHHHH-----TCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT-SBSCT
T ss_pred CCchhhHHHHHHHHh-----hccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccC-CcCCc
Confidence 33322 22110 0126788888888854 554 66555 5578888888888 44444
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=129.50 Aligned_cols=200 Identities=16% Similarity=0.144 Sum_probs=112.3
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++|+.|++++|.. +.++ .++.+++|++|++++| .++.++.+..+++|++|++++|. +..++.... ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGVF-DKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEE
T ss_pred cceeeeeeCCCCc-cccc-ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhHh-cCCcCCCEEE
Confidence 7888888888764 4554 4777888888888887 46666666678888888888775 444443211 3446666666
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++. +..++.. .+.. +++|++|+++++ .++. .+. ..+..+
T Consensus 116 L~~n~-l~~~~~~------------------------~~~~-----l~~L~~L~L~~n-~l~~-~~~----~~~~~l--- 156 (272)
T 3rfs_A 116 LVENQ-LQSLPDG------------------------VFDK-----LTNLTYLNLAHN-QLQS-LPK----GVFDKL--- 156 (272)
T ss_dssp CTTSC-CCCCCTT------------------------TTTT-----CTTCCEEECCSS-CCCC-CCT----TTTTTC---
T ss_pred CCCCc-CCccCHH------------------------Hhcc-----CCCCCEEECCCC-ccCc-cCH----HHhccC---
Confidence 66543 3332221 0111 344555555442 2222 110 111111
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceE
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRR 441 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 441 (616)
++|+.|++++|...+..+..+..+++|+.|++++|...+..+..+..+++|+.|++++|+.. ..|++|++
T Consensus 157 ---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~ 226 (272)
T 3rfs_A 157 ---TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRY 226 (272)
T ss_dssp ---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHH
T ss_pred ---ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHH
Confidence 55666666666444333333456667777777776544333334566777777777776322 12335666
Q ss_pred EEccCCcccccchhh
Q 007138 442 LDISDCKRLEGGFHR 456 (616)
Q Consensus 442 L~l~~c~~l~~~~~~ 456 (616)
+++.. +.++|.+|.
T Consensus 227 l~~~~-n~~~g~ip~ 240 (272)
T 3rfs_A 227 LSEWI-NKHSGVVRN 240 (272)
T ss_dssp HHHHH-HHTGGGBBC
T ss_pred HHHHH-HhCCCcccC
Confidence 66665 455555554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=124.60 Aligned_cols=61 Identities=23% Similarity=0.379 Sum_probs=30.9
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+..+++|++|++++| .++.++... +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 127 ~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 127 FDRLTKLKELRLNTN--QLQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCcccEEECcCC--cCCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 344555666666554 444444321 12455566666655 33444443 445555566666555
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-12 Score=121.65 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=39.3
Q ss_pred cccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
..+++|++|++++| .++.++... +..+++|++|++++ +.++.++. .+..+++|++|++++ +.++.++..
T Consensus 104 ~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~ 173 (251)
T 3m19_A 104 DHLTQLDKLYLGGN--QLKSLPSGV------FDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHG 173 (251)
T ss_dssp TTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT
T ss_pred cccCCCCEEEcCCC--cCCCcChhH------hccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHH
Confidence 34445555555543 333333321 11345555555555 24444443 344555555555555 445554442
Q ss_pred CC--cCCcceEEEcCCc
Q 007138 569 GL--PSSLLQLQIYCCP 583 (616)
Q Consensus 569 ~~--~~~L~~L~i~~c~ 583 (616)
.+ +++|++|++++++
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 22 4455555555543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=130.84 Aligned_cols=187 Identities=23% Similarity=0.309 Sum_probs=114.0
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+|+.|++++|.. +.+|..+ +++|++|++++| .++.+| ..+++|++|++++|. +..++. + . .+|++|+
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--~--~~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-L--P--ASLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-C--C--TTCCEEE
T ss_pred CCccEEEeCCCCC-CccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-h--h--cCCCEEE
Confidence 4788999988765 5677755 378889999887 466777 567888888888875 555554 2 1 1677777
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++. ++.++. .+++|+.|+++++ .++.+ +. . +
T Consensus 127 Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~l--p~---~-----l--------------------------------- 159 (571)
T 3cvr_A 127 VDNNQ-LTMLPE--LPALLEYINADNN-QLTML--PE---L-----P--------------------------------- 159 (571)
T ss_dssp CCSSC-CSCCCC--CCTTCCEEECCSS-CCSCC--CC---C-----C---------------------------------
T ss_pred CCCCc-CCCCCC--cCccccEEeCCCC-ccCcC--CC---c-----C---------------------------------
Confidence 76643 444443 3344555555444 22222 11 0 1
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCC-------cEEEeccCCCCcccCCCCC
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL-------QGIKIWNCGNLVSFPEGGL 434 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~ 434 (616)
++|+.|++++|.... +|. +. ++|+.|++++|. ++.+|. +.. +| +.|++++| .++.+|....
T Consensus 160 ---~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~ 227 (571)
T 3cvr_A 160 ---TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENIL 227 (571)
T ss_dssp ---TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSS-CCCCCCGGGG
T ss_pred ---CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHh
Confidence 455566666554332 444 33 577777777764 445655 433 55 78888777 5666776666
Q ss_pred CCCCceEEEccCCcccccchhhhHhh
Q 007138 435 PCAKLRRLDISDCKRLEGGFHRYMIA 460 (616)
Q Consensus 435 ~~~~L~~L~l~~c~~l~~~~~~~~~~ 460 (616)
.+++|++|++++ +.+++..|..+..
T Consensus 228 ~l~~L~~L~L~~-N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 228 SLDPTCTIILED-NPLSSRIRESLSQ 252 (571)
T ss_dssp GSCTTEEEECCS-SSCCHHHHHHHHH
T ss_pred cCCCCCEEEeeC-CcCCCcCHHHHHH
Confidence 667788888887 5677766654443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.9e-12 Score=122.26 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=111.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|.. ..++ .+..+++|+.|++++|. ++.++. +..+++|++|++++| .+..++. ...+++|++|++
T Consensus 46 ~~L~~L~l~~~~i-~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCc-ccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 5566666666533 2232 25556677777777654 333433 666777777777766 3444433 344457777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++. ..+..+++|+.|++++|.... ...+..+++|++|++++| .+..++... .+
T Consensus 120 ~~n-~i~~~-----~~l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~L~~N--~l~~~~~l~--------~l 177 (291)
T 1h6t_A 120 EHN-GISDI-----NGLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN--QISDIVPLA--------GL 177 (291)
T ss_dssp TTS-CCCCC-----GGGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSS--CCCCCGGGT--------TC
T ss_pred CCC-cCCCC-----hhhcCCCCCCEEEccCCcCCc------chhhccCCCCCEEEccCC--ccccchhhc--------CC
Confidence 764 45443 245666777777777765221 135677899999999986 666665522 68
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
++|+.|++++| .++.++ .+..+++|+.|++++ +.+...+.
T Consensus 178 ~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~-n~i~~~~~ 217 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKPI 217 (291)
T ss_dssp TTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE-EEEECCCE
T ss_pred CccCEEECCCC-cCCCCh-hhccCCCCCEEECcC-CcccCCcc
Confidence 99999999994 688887 488899999999998 55555443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-13 Score=134.49 Aligned_cols=252 Identities=14% Similarity=0.043 Sum_probs=131.7
Q ss_pred chhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccC-CCcEEEccCCCCCcccccccCCC-----CCccEEEEc
Q 007138 161 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSC-RLEYLRLSNCEGLVKLPQSSLSL-----SSLREIEIC 234 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~ 234 (616)
.+.++...++|++|++++|. ++..+...+...+..+ + +|++|++++|......+..+..+ ++|++|+++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 44555556668888888876 6655543332334444 5 78888888886643334444433 788888888
Q ss_pred CCCCCCCCCC------CCCC-CCCcEEEccCCCCccccchhhcc---CC-CCCccEEEeccCCCCccccccCCCCCccEE
Q 007138 235 KCSSLVSFPE------VALP-SKLKNIWISTCDALKSLPEAWMC---DT-NSSLEILSIHGCRSLTYIAAVQLPPSLKQL 303 (616)
Q Consensus 235 ~~~~l~~~~~------~~~~-~~L~~L~l~~~~~l~~~~~~~~~---~~-~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 303 (616)
+|. ++..+. +... ++|++|++++|. +...+..... .. .++|++|++++|. +......
T Consensus 89 ~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~--------- 156 (362)
T 3goz_A 89 GNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD--------- 156 (362)
T ss_dssp SSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH---------
T ss_pred CCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH---------
Confidence 874 444331 2223 678888887776 4444322110 11 2356666665542 2211000
Q ss_pred EEecCCCCCcccccccccccccccC-CCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch---
Q 007138 304 SISDCDNIRTLTVEEGIQSSRRYTS-CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE--- 379 (616)
Q Consensus 304 ~l~~~~~l~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~--- 379 (616)
.+ +..+.. + ++|++|++++| .++. .....+...+... |++|++|++++|...+
T Consensus 157 ---------~l--~~~l~~-----~~~~L~~L~Ls~n-~l~~-~~~~~l~~~l~~~-----~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 157 ---------EL--IQILAA-----IPANVNSLNLRGN-NLAS-KNCAELAKFLASI-----PASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp ---------HH--HHHHHT-----SCTTCCEEECTTS-CGGG-SCHHHHHHHHHTS-----CTTCCEEECTTSCGGGSCH
T ss_pred ---------HH--HHHHhc-----CCccccEeeecCC-CCch-hhHHHHHHHHHhC-----CCCCCEEECCCCCCChhHH
Confidence 00 111111 1 14555555553 2222 0000111111111 0267777777765333
Q ss_pred -hhhhhccC-CCCccEEEcccccccccc----cccccCCCCCcEEEeccCC---C----CcccCCCCCCCCCceEEEccC
Q 007138 380 -SIAERLDN-NTSLETISIERCGNLKIL----PSGLHNLRQLQGIKIWNCG---N----LVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 380 -~~~~~~~~-~~~L~~L~l~~~~~l~~~----~~~l~~l~~L~~L~l~~~~---~----~~~~~~~~~~~~~L~~L~l~~ 446 (616)
.++..+.. .++|+.|++++|...... ...+..+++|+.|++++|. . +..++.....+++|+.+++++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 24555544 358888888887643322 2234677888888888874 0 122333344556789999988
Q ss_pred Ccccccc
Q 007138 447 CKRLEGG 453 (616)
Q Consensus 447 c~~l~~~ 453 (616)
+.+.+.
T Consensus 294 -N~l~~~ 299 (362)
T 3goz_A 294 -KEIHPS 299 (362)
T ss_dssp -CBCCGG
T ss_pred -CcCCCc
Confidence 456554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=112.85 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=75.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|+++++... .++ .+..+++|+.|++++| .+..++ .+..+++|++|++++|......+.....+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45666666655332 344 4555566666666665 233332 4555666666666665332223444444556666666
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++..+. .+..+++|++|++++| ..+..++... .+
T Consensus 120 s~n-~i~~~~~~-------------------------------~l~~l~~L~~L~L~~n-~~i~~~~~l~--------~l 158 (197)
T 4ezg_A 120 SHS-AHDDSILT-------------------------------KINTLPKVNSIDLSYN-GAITDIMPLK--------TL 158 (197)
T ss_dssp CSS-BCBGGGHH-------------------------------HHTTCSSCCEEECCSC-TBCCCCGGGG--------GC
T ss_pred cCC-ccCcHhHH-------------------------------HHhhCCCCCEEEccCC-CCccccHhhc--------CC
Confidence 653 34332221 2344555566666553 1244443222 35
Q ss_pred CccceEecccCccccccccccccCccccEEEecC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
++|+.|++++| .+..++ .+..+++|++|++++
T Consensus 159 ~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 159 PELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp SSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECB
T ss_pred CCCCEEECCCC-CCcChH-HhccCCCCCEEEeeC
Confidence 56666666653 345554 455566666666665
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=118.36 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=36.2
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++|+.|++++|.. ..++ .++.+++|++|++++| .++.++.+..+++|++|++++|. +..++.. ..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i-~~~~-~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l---~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSSL---KDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGGG---TTCTTCCEEE
T ss_pred CcccEEEccCCCc-ccCh-hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChhh---ccCCCCCEEE
Confidence 4555555555443 3333 2455555555555555 34444444445555555555554 3333321 3334444444
Q ss_pred ecc
Q 007138 282 IHG 284 (616)
Q Consensus 282 l~~ 284 (616)
+++
T Consensus 119 L~~ 121 (291)
T 1h6t_A 119 LEH 121 (291)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-13 Score=134.51 Aligned_cols=236 Identities=16% Similarity=0.061 Sum_probs=140.5
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCC-cccEEEecCCCCchhhhhhccCC-----CCccEEEcccccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPP-SLKSLYVYGCSKLESIAERLDNN-----TSLETISIERCGN 401 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~ 401 (616)
..+|++|+++++. ++. .+...+...+..+ + +|++|++++|...+..+..+..+ ++|+.|++++|..
T Consensus 21 ~~~L~~L~Ls~n~-l~~-~~~~~l~~~l~~~------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYS-ISTVELIQAFANT------PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp CTTCCEEECTTSC-GGG-SCHHHHHHHHHTC------CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCCceEEEccCCC-CCh-HHHHHHHHHHHhC------CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 4559999999854 554 1111111233333 5 79999999886655444443332 7899999998874
Q ss_pred ccccccc----ccCC-CCCcEEEeccCCCCcccCCCC-----CC-CCCceEEEccCCcccccchhhhH-hhhcccc-cce
Q 007138 402 LKILPSG----LHNL-RQLQGIKIWNCGNLVSFPEGG-----LP-CAKLRRLDISDCKRLEGGFHRYM-IALHNLT-NLH 468 (616)
Q Consensus 402 l~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~-----~~-~~~L~~L~l~~c~~l~~~~~~~~-~~~~~l~-~L~ 468 (616)
....+.. +..+ ++|++|++++|. +...+... .. +++|++|++++| .+++.....+ ..+..++ +|+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcccc
Confidence 4433332 3444 789999999884 44433211 11 248999999984 5665433322 3445555 899
Q ss_pred eeecCCChHHHHHhhhcCcccccc-CCccEEEEecCCCcccc-----ccccccccCCCCCCCCccceEecccCccccccc
Q 007138 469 SLYIGGNMEIWKSMIERGRGFHRF-SSLRHLTIRGCDDDMVS-----FPLEDKRLGTALPLPASLTTLWISRFPNLERLS 542 (616)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~l~~-----l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 542 (616)
.|++++|.....+.......+..+ ++|++|++++| .+.. ++.... ...++|++|++++| .++..+
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~N-~l~~~~ 241 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCLN-CLHGPS 241 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCSS-CCCCCC
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcCC-CCCcHH
Confidence 999988864321111111233445 48999999886 4444 232221 02458899999884 465543
Q ss_pred c-----ccccCccccEEEecCCCCCcc--------cCC-CCCcCCcceEEEcCCc
Q 007138 543 S-----SIVDLQNLTELVLVNCPKLKY--------FPE-KGLPSSLLQLQIYCCP 583 (616)
Q Consensus 543 ~-----~~~~~~~L~~L~l~~c~~l~~--------l~~-~~~~~~L~~L~i~~c~ 583 (616)
. .+..+++|++|++++| .+.. ++. ....++|++|++++++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2 3467788999999884 3222 222 1235678888888875
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-12 Score=114.13 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 260 (616)
++|++|++++|......+..++.+++|++|++++|..++.++.+..+++|++|++++|.
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 45555555555443334444555555555555555334444444445555555555544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-11 Score=128.35 Aligned_cols=185 Identities=18% Similarity=0.208 Sum_probs=114.1
Q ss_pred CCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccccc
Q 007138 329 CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSG 408 (616)
Q Consensus 329 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 408 (616)
.+++.|+++++ +++. +|...+ ++|++|++++|... .+| ..+++|+.|++++|. ++.+|.
T Consensus 59 ~~L~~L~Ls~n-~L~~-lp~~l~-------------~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~-l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSS-LPDNLP-------------PQITVLEITQNALI-SLP---ELPASLEYLDACDNR-LSTLPE- 117 (571)
T ss_dssp TTCSEEECCSS-CCSC-CCSCCC-------------TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC-
T ss_pred CCccEEEeCCC-CCCc-cCHhHc-------------CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC-CCCcch-
Confidence 47888888874 3443 222211 67888888887544 566 446788888888875 445766
Q ss_pred ccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc
Q 007138 409 LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG 488 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 488 (616)
+.. +|++|++++| .+..+|. .+++|++|++++ +.++++ |. .+++|+.|++++|.... .+.
T Consensus 118 l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~-N~l~~l-p~------~l~~L~~L~Ls~N~L~~-----lp~- 177 (571)
T 3cvr_A 118 LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN-NQLTML-PE------LPTSLEVLSVRNNQLTF-----LPE- 177 (571)
T ss_dssp CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCC-CC------CCTTCCEEECCSSCCSC-----CCC-
T ss_pred hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC-CccCcC-CC------cCCCcCEEECCCCCCCC-----cch-
Confidence 444 8888888887 4556766 345888888888 456653 32 45677777777775221 111
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCc
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 563 (616)
+. ++|+.|++++| .++.+|. ... ......+.|+.|++++ +.++.+|..+..+++|+.|++++ |.+.
T Consensus 178 l~--~~L~~L~Ls~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~-N~l~ 243 (571)
T 3cvr_A 178 LP--ESLEALDVSTN--LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILED-NPLS 243 (571)
T ss_dssp CC--TTCCEEECCSS--CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCS-SSCC
T ss_pred hh--CCCCEEECcCC--CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeC-CcCC
Confidence 22 67777777776 5666665 310 0000112227777777 45777777666677777777777 3443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=129.61 Aligned_cols=172 Identities=18% Similarity=0.216 Sum_probs=117.4
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
+.|+.|++++|.. ..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++| .+..++ ....+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 5666666666543 3333 35667777777777765 334433 667777777777776 444444 3445567888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++. ..+..+++|+.|+|++|.... ...+..+++|+.|++++| .+..++... .+
T Consensus 117 s~N-~l~~l-----~~l~~l~~L~~L~Ls~N~l~~------l~~l~~l~~L~~L~Ls~N--~l~~~~~l~--------~l 174 (605)
T 1m9s_A 117 EHN-GISDI-----NGLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN--QISDIVPLA--------GL 174 (605)
T ss_dssp TTS-CCCCC-----GGGGGCTTCSEEECCSSCCCC------CGGGGSCTTCSEEECCSS--CCCCCGGGT--------TC
T ss_pred cCC-CCCCC-----ccccCCCccCEEECCCCccCC------chhhcccCCCCEEECcCC--cCCCchhhc--------cC
Confidence 774 45543 246677788888887775321 135678899999999987 566655422 68
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
++|+.|++++| .+..++ .+..+++|+.|++++ +.+...|.
T Consensus 175 ~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~-N~l~~~p~ 214 (605)
T 1m9s_A 175 TKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKPI 214 (605)
T ss_dssp TTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCS-EEEECCCC
T ss_pred CCCCEEECcCC-CCCCCh-HHccCCCCCEEEccC-CcCcCCcc
Confidence 99999999995 678776 688899999999999 55555544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-11 Score=127.39 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=80.7
Q ss_pred HhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC
Q 007138 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 244 (616)
Q Consensus 165 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 244 (616)
...+++|+.|+++++. +..++ .+..+ ++|+.|++++|.. ..++. +..+++|+.|++++| .+..++.
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~------~l~~l----~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~ 104 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ------GIQYL----PNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDEN-KIKDLSS 104 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT------TGGGC----TTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSS-CCCCCTT
T ss_pred hhcCCCCCEEECcCCC-CCCCh------HHccC----CCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCC-CCCCChh
Confidence 4567788888887765 55442 24444 7888888888765 45554 777888888888887 4667777
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecC
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDC 308 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 308 (616)
+..+++|+.|++++|. +..++.. ..+++|+.|++++|. +..++....+++|+.|++++|
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~~l---~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDINGL---VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCGGG---GGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS
T ss_pred hccCCCCCEEEecCCC-CCCCccc---cCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC
Confidence 7778888888888776 4445433 455667777776653 444433344455555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=116.81 Aligned_cols=170 Identities=14% Similarity=0.171 Sum_probs=119.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
.++..+.+.++.. ..++ .+..+++|+.|++++|. ++.++ ++..+++|+.|++++| .+..++. ...+++|++|++
T Consensus 19 ~~l~~l~l~~~~i-~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSV-TDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCT-TSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCc-cccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 4556666666543 3343 45667899999999975 66676 6888999999999988 5666655 556679999999
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.+++..+ +.. ++|+.|++++|.... ...+..+++|++|++++| .++.++... .+
T Consensus 93 ~~-N~l~~l~~-----~~~-~~L~~L~L~~N~l~~------~~~l~~l~~L~~L~Ls~N--~i~~~~~l~--------~l 149 (263)
T 1xeu_A 93 NR-NRLKNLNG-----IPS-ACLSRLFLDNNELRD------TDSLIHLKNLEILSIRNN--KLKSIVMLG--------FL 149 (263)
T ss_dssp CS-SCCSCCTT-----CCC-SSCCEEECCSSCCSB------SGGGTTCTTCCEEECTTS--CCCBCGGGG--------GC
T ss_pred CC-CccCCcCc-----ccc-CcccEEEccCCccCC------ChhhcCcccccEEECCCC--cCCCChHHc--------cC
Confidence 98 46766422 222 788888888886322 235677888888888886 566665333 57
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
++|+.|++++ +.+..+ ..+..+++|+.|++++ +.+...|
T Consensus 150 ~~L~~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 150 SKLEVLDLHG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp TTCCEEECTT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCC
T ss_pred CCCCEEECCC-CcCcch-HHhccCCCCCEEeCCC-CcccCCc
Confidence 8888888888 456666 4677788888888888 4555443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=108.63 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=75.3
Q ss_pred cccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEc
Q 007138 366 SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDI 444 (616)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l 444 (616)
+.+.++.+++ .+..+|..+. ++|+.|++++|...+..+..+..+++|++|++++| .+..++... ..+++|++|++
T Consensus 20 s~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEEC
Confidence 3445555443 3344454332 46666666665544434445566666666666665 344444332 23445566666
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.+++..+. .+..+++|+.|++++| .++.++.... .+
T Consensus 96 s~-N~l~~l~~~-------------------------------~~~~l~~L~~L~Ls~N--~l~~lp~~~~-------~l 134 (229)
T 3e6j_A 96 GT-NQLTVLPSA-------------------------------VFDRLVHLKELFMCCN--KLTELPRGIE-------RL 134 (229)
T ss_dssp CS-SCCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCCSCCTTGG-------GC
T ss_pred CC-CcCCccChh-------------------------------HhCcchhhCeEeccCC--cccccCcccc-------cC
Confidence 55 344433221 2345566666666654 4445544332 45
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
++|++|++++ +.++.++. .+..+++|++|++.+
T Consensus 135 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 135 THLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 5666666665 34555543 345555666666655
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=108.01 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=67.8
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
+++++|+++++......+..+..+++|+.|++++|. ++.++. .+..+++|++|++++| .+..++... ..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 556667776664443333335566777777777754 334433 3466777777777766 444554433 345567777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
++++ +.+++..+. .+.++++|+.|++++|... ......+..+++|++|++++|
T Consensus 106 ~L~~-N~l~~~~~~---~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALNT-NQLQSLPDG---VFDKLTQLKDLRLYQNQLK----SVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCS-SCCCCCCTT---TTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSC
T ss_pred EcCC-CcCcccCHh---HhccCCcCCEEECCCCccc----eeCHHHhccCCCccEEEecCC
Confidence 7776 355554332 2334444444444444311 011112444555555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.2e-11 Score=115.98 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=113.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|. +..++ .+..+++|+.|++++|. ++.++. +..+++|++|++++| .+..++.... ++|++|++
T Consensus 41 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred CcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence 788899998884 44555 57788899999999876 555655 889999999999998 5666665444 58999999
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++. ..+..+++|+.|++++|.... ...+..+++|++|++++| .+..+.. +..+
T Consensus 114 ~~N-~l~~~-----~~l~~l~~L~~L~Ls~N~i~~------~~~l~~l~~L~~L~L~~N--~i~~~~~--------l~~l 171 (263)
T 1xeu_A 114 DNN-ELRDT-----DSLIHLKNLEILSIRNNKLKS------IVMLGFLSKLEVLDLHGN--EITNTGG--------LTRL 171 (263)
T ss_dssp CSS-CCSBS-----GGGTTCTTCCEEECTTSCCCB------CGGGGGCTTCCEEECTTS--CCCBCTT--------STTC
T ss_pred cCC-ccCCC-----hhhcCcccccEEECCCCcCCC------ChHHccCCCCCEEECCCC--cCcchHH--------hccC
Confidence 994 67664 257889999999999986332 225778999999999997 6666522 2368
Q ss_pred CccceEecccCccccccc
Q 007138 525 ASLTTLWISRFPNLERLS 542 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~ 542 (616)
++|+.|+++++ .+...|
T Consensus 172 ~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 172 KKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp CCCCEEEEEEE-EEECCC
T ss_pred CCCCEEeCCCC-cccCCc
Confidence 99999999995 455555
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=107.77 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCC
Q 007138 524 PASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCC 582 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 582 (616)
+++|++|++++ +.++.+|..+..+++|++|++++ ++++.++...+ +++|++|+++++
T Consensus 111 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 111 LVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred chhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 44555555554 33444444444455555555554 44444443211 344555555444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-10 Score=105.44 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=30.5
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+..+++|++|++++| .+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++
T Consensus 100 f~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN--KINCLRVDA------FQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCCCCCEEECCCC--CCCEeCHHH------cCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCC
Confidence 344555666666554 444433221 22455556666655 33444443 344555555555555
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=115.00 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=54.3
Q ss_pred CcccEEEecCCCCchhhhhhcc-CCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLD-NNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
+.++.|++++|...+..+..+. .+++|+.|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence 4456666666644333233333 5666666666665533222334566666666666666 34444443 2334566666
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
++++ +.+++..+. .+..+++|+.|++++|
T Consensus 118 ~L~~-N~i~~~~~~---~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 118 LLYN-NHIVVVDRN---AFEDMAQLQKLYLSQN 146 (361)
T ss_dssp ECCS-SCCCEECTT---TTTTCTTCCEEECCSS
T ss_pred ECCC-CcccEECHH---HhCCcccCCEEECCCC
Confidence 6666 345544332 2333444444444444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=117.09 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=59.3
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-ccc-CCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEc
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLH-NLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDI 444 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~-~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 444 (616)
+.++++++ .+..+|..+. +.++.|++++|. ++.++. .+. .+++|+.|++++| .+..++.. ...+++|++|++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 45566554 3444565433 368888888875 444443 444 7888888888887 55555543 445668888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
++ +.++...+. .+..+++|+.|++++|
T Consensus 96 s~-N~l~~~~~~---~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 96 SS-NHLHTLDEF---LFSDLQALEVLLLYNN 122 (361)
T ss_dssp CS-SCCCEECTT---TTTTCTTCCEEECCSS
T ss_pred CC-CcCCcCCHH---HhCCCcCCCEEECCCC
Confidence 88 456655442 2334444444444444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.1e-10 Score=104.39 Aligned_cols=131 Identities=11% Similarity=0.184 Sum_probs=75.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ 443 (616)
++++.|++++|......+..+..+++|+.|++++|......|..+..+++|++|++++| .+..++... ..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 45666666666443333334555666666666665543333555666666666666665 344555443 2344666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++ +.+++..|. .+..+++|+.|++++| .++.++... +..
T Consensus 111 L~~-N~l~~~~~~-------------------------------~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~ 150 (220)
T 2v9t_B 111 LNA-NKINCLRVD-------------------------------AFQDLHNLNLLSLYDN--KLQTIAKGT------FSP 150 (220)
T ss_dssp CCS-SCCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCSCCCTTT------TTT
T ss_pred CCC-CCCCEeCHH-------------------------------HcCCCCCCCEEECCCC--cCCEECHHH------HhC
Confidence 666 345443322 4566778888888876 566665432 235
Q ss_pred CCccceEecccCc
Q 007138 524 PASLTTLWISRFP 536 (616)
Q Consensus 524 ~~~L~~L~l~~c~ 536 (616)
+++|+.|++++++
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 7788888888754
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.5e-10 Score=104.17 Aligned_cols=146 Identities=15% Similarity=0.223 Sum_probs=79.4
Q ss_pred cEEEcccccccccccccccCCCCCcEEEeccCCCCcccCC-C-CCCCCCceEEEccCCcccccchhhhHhhhccccccee
Q 007138 392 ETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE-G-GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHS 469 (616)
Q Consensus 392 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~ 469 (616)
+.++++++. ++.+|..+. +.++.|++++| .+..++. . ...+++|++|++++ +.++++.+.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~------------- 75 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSN-NKITDIEEG------------- 75 (220)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCS-SCCCEECTT-------------
T ss_pred CEeEeCCCC-cccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCC-CcCCEECHH-------------
Confidence 466666643 455665432 34567777766 3444422 2 22445677777766 445554332
Q ss_pred eecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccc-ccccccC
Q 007138 470 LYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL-SSSIVDL 548 (616)
Q Consensus 470 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~ 548 (616)
.+..+++|++|++++| .++.++... +..+++|++|++++ +.+..+ |..+..+
T Consensus 76 ------------------~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l 128 (220)
T 2v70_A 76 ------------------AFEGASGVNEILLTSN--RLENVQHKM------FKGLESLKTLMLRS-NRITCVGNDSFIGL 128 (220)
T ss_dssp ------------------TTTTCTTCCEEECCSS--CCCCCCGGG------GTTCSSCCEEECTT-SCCCCBCTTSSTTC
T ss_pred ------------------HhCCCCCCCEEECCCC--ccCccCHhH------hcCCcCCCEEECCC-CcCCeECHhHcCCC
Confidence 3455566666666664 444444431 12456666666666 334444 3355566
Q ss_pred ccccEEEecCCCCCcccCCCC--CcCCcceEEEcCCc
Q 007138 549 QNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCCP 583 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 583 (616)
++|++|++++ +.++.+++.. .+++|++|++++++
T Consensus 129 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 129 SSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6666666666 5666654422 25566666666654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-10 Score=100.51 Aligned_cols=138 Identities=19% Similarity=0.271 Sum_probs=88.1
Q ss_pred CCCCccEEEccccccc-ccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 387 NNTSLETISIERCGNL-KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 387 ~~~~L~~L~l~~~~~l-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..++|+.|++++|... ..+|..+..+++|+.|++++|. +..+ .....+++|++|++++| .+++.+|.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~--------- 89 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDM--------- 89 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCH---------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHH---------
Confidence 3467888888887643 3677777788888888888874 5555 44455668888888884 56554442
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-- 543 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-- 543 (616)
.+..+++|+.|++++| .++.++... .+..+++|++|++++| .+..++.
T Consensus 90 ----------------------~~~~l~~L~~L~Ls~N--~l~~~~~~~-----~l~~l~~L~~L~l~~N-~l~~~~~~~ 139 (168)
T 2ell_A 90 ----------------------LAEKLPNLTHLNLSGN--KLKDISTLE-----PLKKLECLKSLDLFNC-EVTNLNDYR 139 (168)
T ss_dssp ----------------------HHHHCTTCCEEECBSS--SCCSSGGGG-----GGSSCSCCCEEECCSS-GGGTSTTHH
T ss_pred ----------------------HHhhCCCCCEEeccCC--ccCcchhHH-----HHhcCCCCCEEEeeCC-cCcchHHHH
Confidence 1233566777777665 455544210 0125677777777774 4666654
Q ss_pred --ccccCccccEEEecCCCCCcccCC
Q 007138 544 --SIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 544 --~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+..+++|++|++++ +.+.++|.
T Consensus 140 ~~~~~~l~~L~~L~l~~-n~~~~~~~ 164 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYD-REDQEAPD 164 (168)
T ss_dssp HHHHTTCSSCCEETTEE-TTSCBCCS
T ss_pred HHHHHhCccCcEecCCC-CChhhccc
Confidence 566777888888877 45555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-09 Score=99.90 Aligned_cols=89 Identities=9% Similarity=0.131 Sum_probs=47.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc-CCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF-PEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. +..+ +.....+++|++|+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEE
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEE
Confidence 556666666554433333345556666666666655433333345666666666666653 3333 33333445666666
Q ss_pred ccCCcccccchh
Q 007138 444 ISDCKRLEGGFH 455 (616)
Q Consensus 444 l~~c~~l~~~~~ 455 (616)
+++ +.+++..|
T Consensus 136 L~~-N~l~~~~~ 146 (220)
T 2v70_A 136 LYD-NQITTVAP 146 (220)
T ss_dssp CTT-SCCCCBCT
T ss_pred CCC-CcCCEECH
Confidence 666 45555444
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-09 Score=98.22 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=83.1
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccC
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISD 446 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~ 446 (616)
+.++.+++ ....+|..+ .++|+.|++++|......+..+..+++|++|++++| .+..++... ..+++|++|++++
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 34444443 333445333 358999999987644333334678899999999887 556666544 3566889999988
Q ss_pred CcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCc
Q 007138 447 CKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPAS 526 (616)
Q Consensus 447 c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~ 526 (616)
+ .+++..+. .+..+++|++|++++| .++.++... +..+++
T Consensus 86 n-~l~~~~~~-------------------------------~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~ 125 (208)
T 2o6s_A 86 N-QLQSLPNG-------------------------------VFDKLTQLKELALNTN--QLQSLPDGV------FDKLTQ 125 (208)
T ss_dssp S-CCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTT
T ss_pred C-cCCccCHh-------------------------------HhcCccCCCEEEcCCC--cCcccCHhH------hccCCc
Confidence 4 56654332 2344455555555554 334333321 123455
Q ss_pred cceEecccCcccccccc-ccccCccccEEEecCC
Q 007138 527 LTTLWISRFPNLERLSS-SIVDLQNLTELVLVNC 559 (616)
Q Consensus 527 L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 559 (616)
|++|+++++ .++.++. .+..+++|++|+++++
T Consensus 126 L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 126 LKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 555555552 3444443 2445555566655553
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7e-10 Score=96.52 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCccEEEccccccc-ccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccc
Q 007138 389 TSLETISIERCGNL-KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNL 467 (616)
Q Consensus 389 ~~L~~L~l~~~~~l-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L 467 (616)
++|+.|++++|... +.+|..+..+++|+.|++++| .+..+ .....+++|++|++++ +.+++.+|.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~----------- 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSD-NRVSGGLEV----------- 82 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCS-SCCCSCTHH-----------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCC-CcccchHHH-----------
Confidence 46777777776643 366666677777888887776 44444 3344556788888877 356554443
Q ss_pred eeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccccc--ccccccCCCCCCCCccceEecccCcccccccc--
Q 007138 468 HSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFP--LEDKRLGTALPLPASLTTLWISRFPNLERLSS-- 543 (616)
Q Consensus 468 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-- 543 (616)
.+..+++|++|++++| .++.++ ... ..+++|++|++++| .++.++.
T Consensus 83 --------------------~~~~l~~L~~L~ls~N--~i~~~~~~~~~-------~~l~~L~~L~l~~N-~l~~~~~~~ 132 (149)
T 2je0_A 83 --------------------LAEKCPNLTHLNLSGN--KIKDLSTIEPL-------KKLENLKSLDLFNC-EVTNLNDYR 132 (149)
T ss_dssp --------------------HHHHCTTCCEEECTTS--CCCSHHHHGGG-------GGCTTCCEEECTTC-GGGGSTTHH
T ss_pred --------------------HhhhCCCCCEEECCCC--cCCChHHHHHH-------hhCCCCCEEeCcCC-cccchHHHH
Confidence 1123455555555554 333332 111 13566666666663 4555543
Q ss_pred --ccccCccccEEEec
Q 007138 544 --SIVDLQNLTELVLV 557 (616)
Q Consensus 544 --~~~~~~~L~~L~l~ 557 (616)
.+..+++|+.|+++
T Consensus 133 ~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 133 ENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEETTB
T ss_pred HHHHHHCCCcccccCC
Confidence 45566666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-11 Score=130.40 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=113.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEccccc-------------ccccccccccCCCCCcEEE-eccCC------
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCG-------------NLKILPSGLHNLRQLQGIK-IWNCG------ 424 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~l~~~~~~l~~l~~L~~L~-l~~~~------ 424 (616)
+.|+.|+++++ .++.+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ +..+.
T Consensus 349 ~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 55666666665 334566666666666666665443 2333444555666666665 22220
Q ss_pred ------CCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEE
Q 007138 425 ------NLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHL 498 (616)
Q Consensus 425 ------~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 498 (616)
.+..++. ..|+.|++++ +.++++ | .++.+++|+.|++++|... ..+..+..+++|+.|
T Consensus 428 l~l~~n~i~~l~~-----~~L~~L~Ls~-n~l~~l-p----~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 428 KFLLENSVLKMEY-----ADVRVLHLAH-KDLTVL-C----HLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVL 491 (567)
T ss_dssp HHHHHHHHHHHHH-----TTCSEEECTT-SCCSSC-C----CGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEE
T ss_pred hhhhcccccccCc-----cCceEEEecC-CCCCCC-c----CccccccCcEeecCccccc-----ccchhhhcCCCCCEE
Confidence 1111111 1477777777 456553 3 2566667777777766522 123356777888888
Q ss_pred EEecCCCccccccccccccCCCCCCCCccceEecccCcccccc--ccccccCccccEEEecCCCCCcccCCCCC-----c
Q 007138 499 TIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL--SSSIVDLQNLTELVLVNCPKLKYFPEKGL-----P 571 (616)
Q Consensus 499 ~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~ 571 (616)
++++| .++.+| .. ..+++|++|++++ +.++.+ |..+..+++|++|++++ +.+..+|+... +
T Consensus 492 ~Ls~N--~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 492 QASDN--ALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEML 559 (567)
T ss_dssp ECCSS--CCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHC
T ss_pred ECCCC--CCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHC
Confidence 88886 666676 32 2678888888888 456766 66788888888888888 67777766321 5
Q ss_pred CCcceEE
Q 007138 572 SSLLQLQ 578 (616)
Q Consensus 572 ~~L~~L~ 578 (616)
|+|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 6777764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-08 Score=101.91 Aligned_cols=32 Identities=6% Similarity=-0.089 Sum_probs=16.2
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEE
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELV 555 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~ 555 (616)
.+++|+.+++.+ +.++.|+. .+..+++|++++
T Consensus 295 ~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 295 GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 445555555544 34555544 455555555554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-09 Score=94.29 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=14.7
Q ss_pred cccccCCccEEEEecCCCccccccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPL 512 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~ 512 (616)
.+..+++|+.|++++| ....++.
T Consensus 142 ~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp HHTTCSSCCEETTEET--TSCBCCS
T ss_pred HHHhCccCcEecCCCC--Chhhccc
Confidence 3566777888887775 4444444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-09 Score=92.46 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=7.0
Q ss_pred ccccCCccEEEEe
Q 007138 489 FHRFSSLRHLTIR 501 (616)
Q Consensus 489 ~~~l~~L~~L~i~ 501 (616)
+..+++|+.|+++
T Consensus 136 ~~~l~~L~~L~l~ 148 (149)
T 2je0_A 136 FKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEETTB
T ss_pred HHHCCCcccccCC
Confidence 3445566665553
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=94.22 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccC
Q 007138 387 NNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 387 ~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 446 (616)
.+++|+.|++++|. ++.++......++|+.|++++| .+..+ .....+++|++|++++
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCS
T ss_pred CcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCC
Confidence 34455555555543 3333322222235555555555 33333 2223334555555555
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=100.95 Aligned_cols=301 Identities=11% Similarity=0.081 Sum_probs=149.9
Q ss_pred eEeeccCCCcccccCC-CCCCccEEeecCCcchh--hhhcC-CCCccEEEeCCCcceeecccccccCCCCceeecCCCcc
Q 007138 54 ELHIISCSKLQGTFPE-HLPALEMLVIEGCEELL--VSVAS-LPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ 129 (616)
Q Consensus 54 ~L~l~~c~~l~~~~p~-~~~~L~~L~l~~c~~l~--~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (616)
++.+..-..+.+.++. .++++++|.+++.-... ..+.. +++|+.|+++++.+..+....
T Consensus 6 ~~~~~~~g~l~~~l~~~~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~----------------- 68 (329)
T 3sb4_A 6 TYYVSKPGTLISMMTEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA----------------- 68 (329)
T ss_dssp EEEESSTTCGGGGSCHHHHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS-----------------
T ss_pred eEecCCCCcHHhhccchhhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc-----------------
Confidence 3444433333333332 35567777777653211 23333 788999999999876221110
Q ss_pred eeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhc--------CCCccEEeeccCCCccccchhhhhhHHhhhhhcc
Q 007138 130 VFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQD--------ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELS 201 (616)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~ 201 (616)
..++.+..+.. ..+ .++...|.. +++|++|++.+ .++.++.. .+..+
T Consensus 69 --------~~~~~~~~~~~---~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~----aF~~~---- 123 (329)
T 3sb4_A 69 --------GTYPNGKFYIY---MAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDA----AFKGC---- 123 (329)
T ss_dssp --------SSSGGGCCEEE---CTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTT----TTTTC----
T ss_pred --------ccccccccccc---ccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHH----HhhcC----
Confidence 11111111211 111 145556667 88888888877 46666554 23344
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCC---CCCCCCC--CCCCCCCc-EEEccCCCCccccchhhccCCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCS---SLVSFPE--VALPSKLK-NIWISTCDALKSLPEAWMCDTNS 275 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~l~~~~~--~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~ 275 (616)
++|+.+++.++....--+..|..+.++..+...... ....+.. ...+..|+ .+.+.....+ +......
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l---~~~~~~~--- 197 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL---EDEIMKA--- 197 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH---HHHHHHT---
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH---HHHHhhc---
Confidence 788888888776533333455555555554443311 1111111 11133333 3333222111 1110000
Q ss_pred CccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccc
Q 007138 276 SLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355 (616)
Q Consensus 276 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 355 (616)
+ ..+.++..+.+.+.- ....+..... .+++|+++++.+ ++++. .+...|.
T Consensus 198 ---------~---------~~~~~~~~l~~~~~l--~~~~~~~l~~-----~~~~L~~l~L~~-n~i~~-I~~~aF~--- 247 (329)
T 3sb4_A 198 ---------G---------LQPRDINFLTIEGKL--DNADFKLIRD-----YMPNLVSLDISK-TNATT-IPDFTFA--- 247 (329)
T ss_dssp ---------T---------CCGGGCSEEEEEECC--CHHHHHHHHH-----HCTTCCEEECTT-BCCCE-ECTTTTT---
T ss_pred ---------c---------cCccccceEEEeeee--cHHHHHHHHH-----hcCCCeEEECCC-CCcce-ecHhhhh---
Confidence 0 112233444443321 1110000000 145566666665 22333 2222221
Q ss_pred cccccCCCCCcccEEEecCCCCchhhh-hhccCCCCcc-EEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCC
Q 007138 356 ESLEVGNLPPSLKSLYVYGCSKLESIA-ERLDNNTSLE-TISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEG 432 (616)
Q Consensus 356 ~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~ 432 (616)
.+ .+|+.+.+.++ +..++ ..+..+++|+ .+++.+ .++.++ ..+..|++|+.+++..+ .+..++..
T Consensus 248 -~~------~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 248 -QK------KYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp -TC------TTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTT
T ss_pred -CC------CCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchh
Confidence 11 67777777765 44444 3467788888 888876 455554 46788899999998765 56777765
Q ss_pred CC-CCCCceEEEc
Q 007138 433 GL-PCAKLRRLDI 444 (616)
Q Consensus 433 ~~-~~~~L~~L~l 444 (616)
.+ .|++|+.++.
T Consensus 316 aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 LFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCCCEEEC
T ss_pred hhcCCcchhhhcc
Confidence 54 5677887764
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-08 Score=90.09 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=33.1
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
.+..+++|++|++++| .++.++... +..+++|+.|++++ +.++.++. .+..+++|+.|++++
T Consensus 73 ~f~~l~~L~~L~Ls~N--~l~~i~~~~------f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYN--RLRCIPPRT------FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTTTCTTCCEEECCSS--CCCBCCTTT------TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred HccCCCCCCEEECCCC--ccCEeCHHH------hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence 3455566666666664 444444321 22455666666665 34555554 345556666666665
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.1e-09 Score=94.46 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=88.5
Q ss_pred ccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc
Q 007138 409 LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG 488 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 488 (616)
+..+++|+.|++++| .+..++......++|++|++++| .+++. ..
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~---------------------------------~~ 59 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL---------------------------------DG 59 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE---------------------------------CC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc---------------------------------cc
Confidence 446678888888887 45555442222337888888874 45442 14
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--ccccCccccEEEecCCCCCcccC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS--SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
+..+++|++|++++| .+..++... +..+++|+.|++++ +.++.+|. .+..+++|+.|++++ +.+..+|
T Consensus 60 l~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~ 129 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN--RICRIGEGL------DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKK 129 (176)
T ss_dssp CCCCSSCCEEECCSS--CCCEECSCH------HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGST
T ss_pred cccCCCCCEEECCCC--cccccCcch------hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC-CCCCCcH
Confidence 566777888888776 566665432 01467888888888 45677775 677788888888888 5667776
Q ss_pred CC-----CCcCCcceEEEcCCchhh
Q 007138 567 EK-----GLPSSLLQLQIYCCPLIA 586 (616)
Q Consensus 567 ~~-----~~~~~L~~L~i~~c~~l~ 586 (616)
.. ..+++|++|+++++..-+
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECCHHH
T ss_pred hHHHHHHHHCCccceeCCCcCCHHH
Confidence 62 236788888888876443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=90.50 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=36.1
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc--cccCCCCCcEEEeccCCCCccc-CCCCCCCCCceEEEc
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS--GLHNLRQLQGIKIWNCGNLVSF-PEGGLPCAKLRRLDI 444 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 444 (616)
+.++++++. ++.+|..+.. +|+.|++++|. ++.++. .+..+++|++|++++|. +..+ |.....+++|++|++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEEC
Confidence 455555542 2344443322 55566665553 233332 24555555555555552 2322 333333445555555
Q ss_pred cCCccccc
Q 007138 445 SDCKRLEG 452 (616)
Q Consensus 445 ~~c~~l~~ 452 (616)
++ +.+++
T Consensus 86 s~-N~l~~ 92 (192)
T 1w8a_A 86 GE-NKIKE 92 (192)
T ss_dssp CS-CCCCE
T ss_pred CC-CcCCc
Confidence 55 34433
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-08 Score=87.70 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=28.5
Q ss_pred cccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccEEEecC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTELVLVN 558 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L~l~~ 558 (616)
..+++|+.|++++| .++.++... +..+++|++|++++ +.++.+|.. +..+++|++|++++
T Consensus 73 ~~l~~L~~L~l~~N--~l~~~~~~~------~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 73 DKLTKLTILYLHEN--KLQSLPNGV------FDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp TTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCccCEEECCCC--CccccCHHH------hhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecC
Confidence 44555555555554 344443321 12345555555555 234444442 34455555555555
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.5e-09 Score=114.10 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=68.1
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|++|++++|... .+|..+..+++|+.|++++|. ++.+|..+..+++|++|+|++| .+..+|.....+++|++|++
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEEC
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeC
Confidence 67777777777544 677777788888888888876 4477878888888888888887 56677777666778888888
Q ss_pred cCCcccccchhhhH
Q 007138 445 SDCKRLEGGFHRYM 458 (616)
Q Consensus 445 ~~c~~l~~~~~~~~ 458 (616)
++ +.+++.+|..+
T Consensus 324 ~~-N~l~~~~p~~~ 336 (727)
T 4b8c_D 324 EG-NPLEKQFLKIL 336 (727)
T ss_dssp TT-SCCCSHHHHHH
T ss_pred CC-CccCCCChHHH
Confidence 88 56777776644
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.71 E-value=7e-08 Score=87.70 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=59.4
Q ss_pred CcccEEEecCCCCchhhhh-hccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAE-RLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
.++++|+++++......+. .+..+++|+.|++++|...+..|..+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 4566666766643332222 2566677777777776644444566677777777777776 34444433 3345577777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
++++ +.+++..|. .+..+++|+.|++++|
T Consensus 108 ~L~~-N~l~~~~~~---~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 108 NLYD-NQISCVMPG---SFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCS-SCCCEECTT---SSTTCTTCCEEECTTC
T ss_pred ECCC-CcCCeeCHH---HhhcCCCCCEEEeCCC
Confidence 7777 456665443 2333334444444433
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-08 Score=112.76 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=77.9
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhc
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 485 (616)
+..+..+++|+.|++++| .+..++...+.+++|++|++++ +.++ .+|. .++++++|+.|+|++|... ..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~-N~l~-~lp~---~~~~l~~L~~L~Ls~N~l~-----~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG-NSLT-ELPA---EIKNLSNLRVLDLSHNRLT-----SL 285 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT-SCCS-CCCG---GGGGGTTCCEEECTTSCCS-----SC
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC-CcCc-ccCh---hhhCCCCCCEEeCcCCcCC-----cc
Confidence 334455556666666555 3345554444455566666665 3444 2232 3455555555555555422 12
Q ss_pred CccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCc-cccEEEecCCCCCcc
Q 007138 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQ-NLTELVLVNCPKLKY 564 (616)
Q Consensus 486 ~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~-~L~~L~l~~c~~l~~ 564 (616)
+..+..+++|+.|++++| .+..+|.... .+++|+.|++++|+....+|..+.... .+..+++.+ +.+..
T Consensus 286 p~~~~~l~~L~~L~L~~N--~l~~lp~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~-N~l~~ 355 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDN--MVTTLPWEFG-------NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD-NRPEI 355 (727)
T ss_dssp CSSGGGGTTCSEEECCSS--CCCCCCSSTT-------SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_pred ChhhcCCCCCCEEECCCC--CCCccChhhh-------cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhcc-CcccC
Confidence 335677888999999886 6677776543 688999999998654334554443322 122356776 34332
Q ss_pred cCCCCCcCCcceEEEcCC
Q 007138 565 FPEKGLPSSLLQLQIYCC 582 (616)
Q Consensus 565 l~~~~~~~~L~~L~i~~c 582 (616)
..+..|..|+++++
T Consensus 356 ----~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 356 ----PLPHERRFIEINTD 369 (727)
T ss_dssp ----CCCCC---------
T ss_pred ----cCccccceeEeecc
Confidence 23445666666655
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-06 Score=89.10 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=121.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 443 (616)
.+|+.+++.++ .+..++.....+.+|+.+.+..+ ++.++. .+..+++|+.+.+.++ +..++...+...+|+.+.
T Consensus 180 ~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVK 254 (401)
T ss_dssp TTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEE
T ss_pred ccCCeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEE
Confidence 44455555443 22233333333456666666532 444432 4556666666666542 455555554444666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHH-hhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKS-MIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
+.. .++.+... .|.+|++|+.+.+.++...... ..+....|..+++|+.+.+.+ .++.++... |.
T Consensus 255 lp~--~i~~I~~~---aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~a------F~ 320 (401)
T 4fdw_A 255 LPN--GVTNIASR---AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGL------LG 320 (401)
T ss_dssp EET--TCCEECTT---TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTT------TT
T ss_pred eCC--CccEEChh---HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhh------hc
Confidence 632 33333222 5566666666666554311000 013344788899999999975 466665543 55
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC---cCCcceEEEcCCchhhhhhhcCCCCccc
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL---PSSLLQLQIYCCPLIAEKCRKDGGQYWD 598 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~~~~~~~~~w~ 598 (616)
.+++|+.+.+.. +++.|+. .+..+ +|+++++.+ +.+..++...+ ...+..|.+-... .+.|... ..|.
T Consensus 321 ~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~ 392 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWR 392 (401)
T ss_dssp TCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGG
T ss_pred CCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchh
Confidence 678999999965 4777765 67788 999999998 67777776433 3578888887532 3334432 3475
Q ss_pred cc
Q 007138 599 LL 600 (616)
Q Consensus 599 ~i 600 (616)
..
T Consensus 393 ~f 394 (401)
T 4fdw_A 393 DF 394 (401)
T ss_dssp GG
T ss_pred hh
Confidence 44
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=85.72 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=47.4
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 443 (616)
+++++|+++++.. ..+|..+..+++|+.|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|+
T Consensus 31 ~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 4566666666533 345555666666666666665533333334566666666666665 34444432 23345666666
Q ss_pred ccCCcccccc
Q 007138 444 ISDCKRLEGG 453 (616)
Q Consensus 444 l~~c~~l~~~ 453 (616)
+++ +.++..
T Consensus 109 L~~-N~l~~~ 117 (193)
T 2wfh_A 109 LHG-NDISVV 117 (193)
T ss_dssp CCS-SCCCBC
T ss_pred CCC-CCCCee
Confidence 666 445443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=88.35 Aligned_cols=236 Identities=10% Similarity=0.139 Sum_probs=153.7
Q ss_pred CccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhh-hhccCCCCccEEEccccccccccccc
Q 007138 330 LLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIA-ERLDNNTSLETISIERCGNLKILPSG 408 (616)
Q Consensus 330 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~ 408 (616)
+|+.+.+.. +++. .....|.. .+|+.+.+.. .+..+. ..+..|++|+.+++.++. ++.++..
T Consensus 136 ~L~~i~l~~--~i~~-I~~~aF~~-----------~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~ 198 (401)
T 4fdw_A 136 QIAKVVLNE--GLKS-IGDMAFFN-----------STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPAS 198 (401)
T ss_dssp CCSEEECCT--TCCE-ECTTTTTT-----------CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTT
T ss_pred CccEEEeCC--CccE-ECHHhcCC-----------CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechh
Confidence 577777753 2443 23233322 4577777765 344443 356778899999998754 6666664
Q ss_pred ccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCc
Q 007138 409 LHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGR 487 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 487 (616)
.-.+.+|+.+.+.+ .+..++...+ .|++|+.+++.. +++.+-.. .|.+ .+|+.+.+..+. ..+...
T Consensus 199 aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~---aF~~-~~L~~i~lp~~i-----~~I~~~ 265 (401)
T 4fdw_A 199 TFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQE---AFRE-SGITTVKLPNGV-----TNIASR 265 (401)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTT---TTTT-CCCSEEEEETTC-----CEECTT
T ss_pred hEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccc---cccc-CCccEEEeCCCc-----cEEChh
Confidence 44468999999875 3677776655 577899999875 35444332 3444 578888885542 123345
Q ss_pred cccccCCccEEEEecCCCc---cccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCc
Q 007138 488 GFHRFSSLRHLTIRGCDDD---MVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~---l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~ 563 (616)
+|..+++|+.+++.++... ...++. ..|..+++|+.+++.+ .++.|+. .+..+++|+.+.+.. +++
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~------~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHP------YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECT------TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECH------HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--ccc
Confidence 7889999999999885211 112333 2456789999999985 5888876 688899999999964 588
Q ss_pred ccCCCCC--cCCcceEEEcCCchhhhhhhcCCCCccccc-CCccEEEEcCe
Q 007138 564 YFPEKGL--PSSLLQLQIYCCPLIAEKCRKDGGQYWDLL-THIPHVVIDDK 611 (616)
Q Consensus 564 ~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i-~~i~~~~~~~~ 611 (616)
.+....+ + +|+++.+.++.-.. . ....+..+ .++..+.++..
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~-l----~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQ-V----FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCB-C----CCSSCCCSCTTCCEEEECGG
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcc-c----ccccccCCCCCccEEEeCHH
Confidence 8887544 5 89999998863211 1 11224444 35666766543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-07 Score=81.87 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=40.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
++++.|+++++...+..+..+..+++|+.|++++|. ++.++. .+..+++|+.|++++| .+..++... ..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 445555555554332222233455556666665554 233332 3455556666666555 333444332 234455666
Q ss_pred EccCCccccc
Q 007138 443 DISDCKRLEG 452 (616)
Q Consensus 443 ~l~~c~~l~~ 452 (616)
++++ +.+++
T Consensus 106 ~l~~-N~l~~ 114 (177)
T 2o6r_A 106 ALDT-NQLKS 114 (177)
T ss_dssp ECCS-SCCSC
T ss_pred ECcC-CcceE
Confidence 6655 34443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-10 Score=101.52 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=46.2
Q ss_pred cccEEEecCC-CCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 366 SLKSLYVYGC-SKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 366 ~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
.++...+.+. +.++.+|..+..+++|+.|++++|. ++.+| .+..+++|+.|++++| .+..+|.....+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 3444444433 1234445566667777777777764 44455 5666777777777766 34445443333346666666
Q ss_pred cCCccccc
Q 007138 445 SDCKRLEG 452 (616)
Q Consensus 445 ~~c~~l~~ 452 (616)
++| .+++
T Consensus 101 ~~N-~l~~ 107 (198)
T 1ds9_A 101 SYN-QIAS 107 (198)
T ss_dssp EEE-ECCC
T ss_pred cCC-cCCc
Confidence 663 4444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=98.66 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=38.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc--CCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF--PEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L 442 (616)
++|+.|++++|... .+|..+..+++|+.|++++|. ++.+| .+..+++|+.|++++| .+..+ |.....+++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEE
Confidence 44555555544332 444445555555555555543 23344 4455555555555554 23333 3333334455555
Q ss_pred EccCCcccccc
Q 007138 443 DISDCKRLEGG 453 (616)
Q Consensus 443 ~l~~c~~l~~~ 453 (616)
++++ +.+++.
T Consensus 539 ~L~~-N~l~~~ 548 (567)
T 1dce_A 539 NLQG-NSLCQE 548 (567)
T ss_dssp ECTT-SGGGGS
T ss_pred EecC-CcCCCC
Confidence 5554 334443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=80.30 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=50.7
Q ss_pred CcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCC
Q 007138 415 LQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSS 494 (616)
Q Consensus 415 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 494 (616)
.+.++++++ .++.+|..... +|++|++++ +.+++..|. .+..+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~~--~l~~L~L~~-N~i~~~~~~-------------------------------~~~~l~~ 55 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIPT--TTQVLYLYD-NQITKLEPG-------------------------------VFDRLTQ 55 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCCT--TCSEEECCS-SCCCCCCTT-------------------------------TTTTCTT
T ss_pred CCEEEeCCC-CcCccCccCCC--CCcEEEcCC-CcCCccChh-------------------------------hhcCccc
Confidence 345555554 45555554433 666666666 455554332 2344455
Q ss_pred ccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 495 LRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 495 L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
|++|++++| .++.++... +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 56 L~~L~Ls~N--~l~~l~~~~------f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 56 LTRLDLDNN--QLTVLPAGV------FDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCC--CcCccChhh------ccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCC
Confidence 555555554 444444322 12355555555555 34555544 345555666666655
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.4e-07 Score=80.25 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=55.0
Q ss_pred cEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCc
Q 007138 416 QGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495 (616)
Q Consensus 416 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 495 (616)
+.++++++ .+..+|..... +|++|++++ +.+++..|. .+..+++|
T Consensus 15 ~~l~~~~n-~l~~iP~~~~~--~L~~L~Ls~-N~l~~~~~~-------------------------------~~~~l~~L 59 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIPT--DKQRLWLNN-NQITKLEPG-------------------------------VFDHLVNL 59 (174)
T ss_dssp SEEECCSS-CCSSCCSCCCT--TCSEEECCS-SCCCCCCTT-------------------------------TTTTCTTC
T ss_pred cEEEeCCC-CCCccCCCcCC--CCcEEEeCC-CCccccCHH-------------------------------HhcCCcCC
Confidence 45555554 44556554443 667777766 455554332 34455566
Q ss_pred cEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccEEEecC
Q 007138 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTELVLVN 558 (616)
Q Consensus 496 ~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L~l~~ 558 (616)
+.|++++| .++.++... +..+++|++|++++ +.++.+|.. +..+++|++|++++
T Consensus 60 ~~L~Ls~N--~l~~i~~~~------~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 60 QQLYFNSN--KLTAIPTGV------FDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CEEECCCC--CCCccChhH------hCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCC
Confidence 66666654 455554432 12456666666666 445565543 55666666666666
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-09 Score=100.15 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=40.3
Q ss_pred CccEEEcccc-cccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 390 SLETISIERC-GNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 390 ~L~~L~l~~~-~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
.++...+.+. +.++.+|..+..+++|++|++++| .+..+| ....+++|++|++++| .++.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~ 84 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKK 84 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECS
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Cccc
Confidence 4455555543 234556667888999999999887 455666 4445568899998884 5653
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=82.11 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=33.2
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+|..+.+|+.++|.+ .++.+... +|..+++|+.+.+.. .++.|+. .+..+++|+.+++..
T Consensus 315 aF~~c~~L~~i~lp~---~v~~I~~~------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY---LVEEIGKR------SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT---TCCEECTT------TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCC---cccEEhHH------hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 455666666666643 34444332 234556666666654 2555544 556666666666653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=76.95 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=29.8
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccCCcccccc
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~ 453 (616)
++|+.|++++|...+..+..+..+++|++|++++| .+..++... ..+++|++|++++ +.+++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~ 93 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND-NQLKSI 93 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC-CccCEe
Confidence 35555555554433322344455555555555554 344444433 2334555555555 344443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=76.86 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccCCcccccc
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~ 453 (616)
++|+.|++++|...+..|..+..+++|+.|++++| .+..+|... ..+++|++|++++ +.+++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l 96 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSI 96 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-Ccccee
Confidence 45556666555433333444555566666666555 444454433 2344566666655 345443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-07 Score=95.87 Aligned_cols=137 Identities=14% Similarity=0.015 Sum_probs=64.6
Q ss_pred CcccEEEecCCCCchhhh----hhcc-CCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCC-----CC
Q 007138 365 PSLKSLYVYGCSKLESIA----ERLD-NNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPE-----GG 433 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-----~~ 433 (616)
+.++.|++++|....... ..+. ..++|+.|++++|........ ....+++|+.|++++|. +..... ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence 556666666665443222 1222 225777777777653222111 12334566777777663 321110 00
Q ss_pred -CCCCCceEEEccCCcccccchh-hhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 434 -LPCAKLRRLDISDCKRLEGGFH-RYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 434 -~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
.+.++|++|++++| .+++... .....+..+++|+.|++++|.....+.......+...++|++|++++|
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 12236777777764 3443221 112234455566666666665333332222334444555666666654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-05 Score=77.85 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=62.7
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
.+..+.+|+.+.+.+ .++.+.... |..+++|+.+++.. .++.|+. .+..+.+|+.+.+.. .++.+.
T Consensus 292 ~F~~~~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD---SVKFIGEEA------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TTTTCTTCCEEEECT---TCCEECTTT------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred ccccccccccccccc---ccceechhh------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh
Confidence 567788999999966 466655432 55789999999975 4778865 788899999999975 488888
Q ss_pred CCCC--cCCcceEEEcC
Q 007138 567 EKGL--PSSLLQLQIYC 581 (616)
Q Consensus 567 ~~~~--~~~L~~L~i~~ 581 (616)
...+ +++|+++++..
T Consensus 359 ~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTBTTCTTCCEEEEEG
T ss_pred HHHhhCCCCCCEEEECC
Confidence 7654 67899999864
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=76.43 Aligned_cols=91 Identities=7% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhh---ccCCCcEEEccCCCCCcc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCE---LSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~ 217 (616)
.+|+.|++++|.... .....+..+++|++|+|++|..+++ ..+..+.. .+++|++|++++|..+++
T Consensus 61 ~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 467888888876332 2334457888888888888887776 23444433 235688888888876653
Q ss_pred c-ccccCCCCCccEEEEcCCCCCCCC
Q 007138 218 L-PQSSLSLSSLREIEICKCSSLVSF 242 (616)
Q Consensus 218 ~-~~~~~~l~~L~~L~l~~~~~l~~~ 242 (616)
- -..+..+++|++|++++|+.+++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCch
Confidence 1 223556788888888888766653
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-07 Score=94.75 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=108.2
Q ss_pred CCccEEEcccccccccc----ccccc-CCCCCcEEEeccCCCCcc--cCCCCCCCCCceEEEccCCcccccchhhhHh-h
Q 007138 389 TSLETISIERCGNLKIL----PSGLH-NLRQLQGIKIWNCGNLVS--FPEGGLPCAKLRRLDISDCKRLEGGFHRYMI-A 460 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~----~~~l~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~ 460 (616)
+.|+.|++++|...... ...+. ..++|++|++++|. +.. +......+++|++|++++| .+++.....++ .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 48999999998744322 22233 34799999999984 332 1111112347999999995 67655433333 2
Q ss_pred h-cccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 461 L-HNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 461 ~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
+ ....+|+.|++++|.....+.......+...++|++|++++| .+..... ..+...+..+++|++|++++| .++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~--~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGL--ELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHH--HHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHH--HHHHHHHhcCCCcCeEECCCC-CCC
Confidence 2 356789999999998655444444455677899999999997 3332110 001111224678999999996 455
Q ss_pred cc-----ccccccCccccEEEecCCCCCcc
Q 007138 540 RL-----SSSIVDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 540 ~i-----~~~~~~~~~L~~L~l~~c~~l~~ 564 (616)
.. ...+...++|++|++++ +.+.+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~~ 253 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYF-NELSS 253 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTT-SSCCH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccC-CCCCH
Confidence 43 33455679999999999 55655
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.9e-06 Score=84.79 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=25.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccc--cCCCCCcEEEec
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGL--HNLRQLQGIKIW 421 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l--~~l~~L~~L~l~ 421 (616)
|+|+.|.++++.... ++. + ..++|+.|++..|.........+ ..+|+|++|+|+
T Consensus 172 P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 566666665552221 222 1 24566666666544322211122 256666666664
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.6e-06 Score=81.32 Aligned_cols=84 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred CccCCCcceeecccccccc----cccc-cCCCcccccCCCcceEeeccCCCcccccCCCCCCccEEeecCCcchh---hh
Q 007138 17 PIPFPCLETLRFENMQEWE----DWIP-LRSGQGVEWFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGCEELL---VS 88 (616)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~----~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~L~~L~l~~c~~l~---~~ 88 (616)
...|++|++|.+.+.. .+ +|.. .+...-+..+|+|+.|.+++|..+. ..+...++|+.|++..|..-. ..
T Consensus 135 ~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHH
Confidence 4567889999886542 11 1211 0110111457889999988874332 222246788888888776322 12
Q ss_pred h--cCCCCccEEEeCC
Q 007138 89 V--ASLPALCKFEIGG 102 (616)
Q Consensus 89 ~--~~~~~L~~L~l~~ 102 (616)
+ ..+|+|++|+|+.
T Consensus 213 l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHSBCTTCCEEEEEC
T ss_pred HHHccCCCCcEEEEec
Confidence 2 3678888888753
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00074 Score=68.53 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=43.1
Q ss_pred ccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhhhc
Q 007138 385 LDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALH 462 (616)
Q Consensus 385 ~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 462 (616)
+..++.|+.+.+.. .++.++. .+..|.+|+.+.+.. .++.+....+ .|.+|+.+.+.. +++.+-.. .|.
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~---aF~ 354 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPES---AFS 354 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGG---GGT
T ss_pred cccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHh---Hhh
Confidence 44556666666642 2344433 455666777776654 2455555443 456666666643 23332211 445
Q ss_pred ccccceeeecCCCh
Q 007138 463 NLTNLHSLYIGGNM 476 (616)
Q Consensus 463 ~l~~L~~L~l~~~~ 476 (616)
+|.+|+.+++.++.
T Consensus 355 ~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 NCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEESSCH
T ss_pred CCCCCCEEEECCce
Confidence 55555555555544
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-06 Score=74.22 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=20.4
Q ss_pred CCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc
Q 007138 142 KLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS 184 (616)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 184 (616)
+|+.|++.+|.+.+. .....+..+++|++|++++|+.+++
T Consensus 115 ~L~~L~Ls~C~~ITD---~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTD---KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCH---HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCH---HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 344444444444333 2223344566666666666666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=79.32 Aligned_cols=104 Identities=24% Similarity=0.180 Sum_probs=71.9
Q ss_pred EEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhhHhhhcccccceeee
Q 007138 393 TISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLY 471 (616)
Q Consensus 393 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~ 471 (616)
.++.+++..++.+|. +..+++|+.|+|+++..+..++.. ...+++|++|++++ ++++++.|.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~--------------- 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPD--------------- 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTT---------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHH---------------
Confidence 456666535777887 888888888888763356666643 33556788888887 467766553
Q ss_pred cCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 472 IGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 472 l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
.|..+++|+.|++++| .+..++... +..+ .|+.|++.+++ +.
T Consensus 75 ----------------~~~~l~~L~~L~l~~N--~l~~~~~~~------~~~~-~L~~l~l~~N~-~~ 116 (347)
T 2ifg_A 75 ----------------AFHFTPRLSRLNLSFN--ALESLSWKT------VQGL-SLQELVLSGNP-LH 116 (347)
T ss_dssp ----------------GGGSCSCCCEEECCSS--CCSCCCSTT------TCSC-CCCEEECCSSC-CC
T ss_pred ----------------HhcCCcCCCEEeCCCC--ccceeCHHH------cccC-CceEEEeeCCC-cc
Confidence 4577889999999987 777777654 1123 39999999844 44
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0015 Score=66.15 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=6.5
Q ss_pred hHHhcCCCccEEeec
Q 007138 163 ELLQDICSLKRLTIT 177 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~ 177 (616)
.+|..+.+|+.+.+.
T Consensus 81 ~AF~~C~~L~~i~~~ 95 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQ 95 (394)
T ss_dssp TTTTTCTTCCEEEEG
T ss_pred HHhhCCccCceEeec
Confidence 334444444444443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.74 E-value=8.9e-05 Score=73.97 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=61.5
Q ss_pred CcccEEEecC-CCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYG-CSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 443 (616)
.+|+.|++++ |......+..+..+++|+.|++++|...+..|..+..+++|+.|+|++| .+..+|...+....|+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEE
Confidence 6788888886 5444333456778888999999887644444556788889999999887 5667776665543588888
Q ss_pred ccCCcccccc
Q 007138 444 ISDCKRLEGG 453 (616)
Q Consensus 444 l~~c~~l~~~ 453 (616)
+.+ +.+...
T Consensus 110 l~~-N~~~c~ 118 (347)
T 2ifg_A 110 LSG-NPLHCS 118 (347)
T ss_dssp CCS-SCCCCC
T ss_pred eeC-CCccCC
Confidence 887 455543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.019 Score=57.70 Aligned_cols=69 Identities=7% Similarity=0.109 Sum_probs=44.4
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
.+..+.+|+.+.+.++ .++.++... |..+++|+.+.+.. .++.|.. .+..+++|+++.+.. .++.+.
T Consensus 281 aF~~c~~L~~i~l~~~--~i~~I~~~a------F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNS--AIETLEPRV------FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTTTCTTCCEEEECCT--TCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred cccccccccccccccc--ccceehhhh------hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 5677788888888653 455555432 45677888888854 4666655 567777777777653 355555
Q ss_pred CC
Q 007138 567 EK 568 (616)
Q Consensus 567 ~~ 568 (616)
..
T Consensus 349 ~~ 350 (379)
T 4h09_A 349 SG 350 (379)
T ss_dssp TT
T ss_pred hh
Confidence 43
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.037 Score=55.47 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=24.5
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS 542 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 542 (616)
+|..+.+|+.+.|.. .++.+.... |..+++|+.+.+-. .++.|.
T Consensus 305 aF~~c~~L~~i~lp~---~l~~I~~~a------F~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 305 VFMDCVKLSSVTLPT---ALKTIQVYA------FKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTTTCTTCCEEECCT---TCCEECTTT------TTTCTTCCCCCCCT--TCCEEC
T ss_pred hhcCCCCCCEEEcCc---cccEEHHHH------hhCCCCCCEEEECC--ccCEEc
Confidence 566677777777744 344444322 34556666666643 344444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00022 Score=63.75 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=5.3
Q ss_pred CCCCccEEEeCCC
Q 007138 91 SLPALCKFEIGGC 103 (616)
Q Consensus 91 ~~~~L~~L~l~~~ 103 (616)
..+.|++|++++|
T Consensus 34 ~~~~L~~L~L~~n 46 (185)
T 1io0_A 34 NDPDLEEVNLNNI 46 (185)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCCCCCEEEecCC
Confidence 3344444444443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=8.2e-05 Score=66.67 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=18.2
Q ss_pred hccCCCCccEEEccccccccc-----ccccccCCCCCcEEEeccC
Q 007138 384 RLDNNTSLETISIERCGNLKI-----LPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 384 ~~~~~~~L~~L~l~~~~~l~~-----~~~~l~~l~~L~~L~l~~~ 423 (616)
.+...++|++|++++|..++. +...+...++|++|++++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 344455555555555512221 2223344455555555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0025 Score=60.12 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=44.1
Q ss_pred cCCCcEEEccCCCCCc--ccccccCCCCCccEEEEcCCCCCCCCCCCCCCC--CCcEEEccCCCCcc
Q 007138 201 SCRLEYLRLSNCEGLV--KLPQSSLSLSSLREIEICKCSSLVSFPEVALPS--KLKNIWISTCDALK 263 (616)
Q Consensus 201 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~L~~L~l~~~~~l~ 263 (616)
+++|+.|+|++|.... .+|..++.+++|+.|++++| .++.+..+..+. +|++|++.+|+.-.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCcc
Confidence 4789999999887643 44556667889999999887 466554443333 88888888887443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=55.81 Aligned_cols=83 Identities=17% Similarity=0.065 Sum_probs=38.9
Q ss_pred CCCCccEEEcccccccc--cccccccCCCCCcEEEeccCCCCcccCCCCCCCC--CceEEEccCCcccccchhh----hH
Q 007138 387 NNTSLETISIERCGNLK--ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA--KLRRLDISDCKRLEGGFHR----YM 458 (616)
Q Consensus 387 ~~~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~~~~----~~ 458 (616)
.+++|+.|++++|.... .++..+..+++|+.|+|++| .+..+.. ...++ +|++|+++++ .+.+.+|. ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~-l~~l~~l~L~~L~L~~N-pl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE-LDKIKGLKLEELWLDGN-SLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG-GGGGTTSCCSEEECTTS-TTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh-hhhcccCCcceEEccCC-cCccccCcchhHHH
Confidence 34556666666554322 23333445666666666655 3332211 11111 5666666663 34443321 11
Q ss_pred hhhcccccceeeec
Q 007138 459 IALHNLTNLHSLYI 472 (616)
Q Consensus 459 ~~~~~l~~L~~L~l 472 (616)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23556667776653
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.21 Score=41.13 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCccceEecccCcccccccc-ccccCccccEEEecCCC
Q 007138 524 PASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCP 560 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~ 560 (616)
+++|++|++++ +.|+.++. .+..+++|++|+|.+++
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 56778888877 56777776 45667777777777743
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=90.57 E-value=0.13 Score=45.63 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=43.7
Q ss_pred ccCCCCCcEEEeccCCCCcc-----cCCCCCCCCCceEEEccCCcccccchhhhH-hhhcccccceeeecCCChHHHHHh
Q 007138 409 LHNLRQLQGIKIWNCGNLVS-----FPEGGLPCAKLRRLDISDCKRLEGGFHRYM-IALHNLTNLHSLYIGGNMEIWKSM 482 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 482 (616)
+.+-+.|++|+++++..+.. +......-+.|+.|++++| .+.+.--..+ ..+..-++|+.|+|++|.....+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 34556788888876533331 1111122237888888874 4544321111 233444455555555554333333
Q ss_pred hhcCccccccCCccEEEEec
Q 007138 483 IERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 483 ~~~~~~~~~l~~L~~L~i~~ 502 (616)
....+++..-..|++|++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 32223333333444444443
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.43 Score=39.19 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=40.6
Q ss_pred eEecccCcccc--ccccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 529 TLWISRFPNLE--RLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 529 ~L~l~~c~~l~--~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.++.++ ..++ .+|..+ .++|++|+|++ |+++.++...+ +++|++|++.++|
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 566776 5677 788543 34799999999 99999998654 6899999999876
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=87.82 E-value=0.95 Score=40.06 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=53.5
Q ss_pred cchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCc----ccccccCCCCCccEEEEcC
Q 007138 160 SHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLV----KLPQSSLSLSSLREIEICK 235 (616)
Q Consensus 160 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 235 (616)
........-+.|++|+|+++..+..-... .....|. .-..|+.|+|++|..-. .+...+..-+.|++|++++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~---~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIR---SLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHH---HHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHH---HHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 34445566678888888765344432111 1222222 22678888888877633 2333344566788888888
Q ss_pred CCCCCCCC------CCCCCCCCcEEEccCC
Q 007138 236 CSSLVSFP------EVALPSKLKNIWISTC 259 (616)
Q Consensus 236 ~~~l~~~~------~~~~~~~L~~L~l~~~ 259 (616)
|. +++-. .+..-..|++|+++++
T Consensus 108 N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 108 NF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred Cc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 73 44322 1233456888888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 616 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.004 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.004 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.004
Identities = 36/219 (16%), Positives = 68/219 (31%), Gaps = 14/219 (6%)
Query: 201 SCRLEYLRLSNCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFPE-VALPSKLKNIWIST 258
R++++ LSN V LS S L+ + + +A S L + +S
Sbjct: 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 104
Query: 259 CDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEE 318
C + + S L+ L++ C T + + + +++
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164
Query: 319 GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL 378
S+ L HLD+S L + + L+ L + C +
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKN-----------DCFQEFFQLNYLQHLSLSRCYDI 213
Query: 379 -ESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQ 416
L +L+T+ + L L LQ
Sbjct: 214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.004
Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 15/208 (7%)
Query: 269 WMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTS 328
+ I ++ I + + +L +LS++ L + S T
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ----LKDIGTLASLTNLTD 245
Query: 329 CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNN 388
L + IS+ L+ + EL L + ++ N+ P + E+ E +
Sbjct: 246 LDLANNQISNLAPLSGLTKLTEL--KLGANQISNISPLAGLTALTNLELNENQLEDISPI 303
Query: 389 TSLETISIERCGNLKIL-PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDC 447
++L+ ++ I S + +L +LQ + N N VS + L
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN--NKVSDVSSLANLTNINWLSAGHN 361
Query: 448 KRLEGGFHRYMIALHNLTNLHSLYIGGN 475
++ + L NLT + L +
Sbjct: 362 -QISD-----LTPLANLTRITQLGLNDQ 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 616 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.82 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.7 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.67 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.66 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.65 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.59 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.53 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.49 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.47 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.46 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.41 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.41 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.4 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.38 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.3 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.3 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.29 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.28 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.22 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.21 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.17 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.14 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.91 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.88 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.82 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.78 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.77 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.74 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.47 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.45 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.44 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.43 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.31 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.28 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.43 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 96.41 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.02 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.67 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.66 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 95.42 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.82 E-value=3.8e-18 Score=172.60 Aligned_cols=341 Identities=19% Similarity=0.195 Sum_probs=184.5
Q ss_pred cCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCC
Q 007138 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVA 246 (616)
Q Consensus 167 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 246 (616)
.+.+|++|+++++. ++.+. .++.+ ++|++|++++|.. +.++. ++++++|++|++++| .+.+++.+.
T Consensus 42 ~l~~l~~L~l~~~~-I~~l~------gl~~L----~nL~~L~Ls~N~l-~~l~~-l~~L~~L~~L~L~~n-~i~~i~~l~ 107 (384)
T d2omza2 42 DLDQVTTLQADRLG-IKSID------GVEYL----NNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNN-QIADITPLA 107 (384)
T ss_dssp HHTTCCEEECCSSC-CCCCT------TGGGC----TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGGT
T ss_pred HhCCCCEEECCCCC-CCCcc------ccccC----CCCCEEeCcCCcC-CCCcc-ccCCccccccccccc-ccccccccc
Confidence 34567777776653 44431 13444 6777777777654 55653 677777777777776 355666666
Q ss_pred CCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEec-CCCCCccccccccccccc
Q 007138 247 LPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISD-CDNIRTLTVEEGIQSSRR 325 (616)
Q Consensus 247 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~-~~~l~~l~~~~~~~~~~~ 325 (616)
.+++|+.+++.++. ...++.. .....+.......+. +............+...... ......+ ..
T Consensus 108 ~l~~L~~L~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 173 (384)
T d2omza2 108 NLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPL------AN--- 173 (384)
T ss_dssp TCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGG------TT---
T ss_pred cccccccccccccc-ccccccc---ccccccccccccccc-ccccccccccccccccccccccchhhhh------cc---
Confidence 67777777776655 3333332 222223333322211 11111111111111111110 0011100 00
Q ss_pred ccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccc
Q 007138 326 YTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405 (616)
Q Consensus 326 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 405 (616)
............. . ........+ ++++.+.++++...+..+ ...+++|+.|++++|. ++.+
T Consensus 174 --~~~~~~~~~~~~~-~-------~~~~~~~~l------~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~-l~~~ 234 (384)
T d2omza2 174 --LTTLERLDISSNK-V-------SDISVLAKL------TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDI 234 (384)
T ss_dssp --CTTCCEEECCSSC-C-------CCCGGGGGC------TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC
T ss_pred --ccccccccccccc-c-------ccccccccc------cccceeeccCCccCCCCc--ccccCCCCEEECCCCC-CCCc
Confidence 0111111111100 0 001111111 566777777664443322 3445677777777764 3444
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhc
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 485 (616)
+ .+..+++|+.|++++|. +..++. ...+++|++++++++ .+++.. .+..+..++.+.+..+....
T Consensus 235 ~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~~-~l~~~~-----~~~~~~~l~~l~~~~n~l~~------ 299 (384)
T d2omza2 235 G-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGAN-QISNIS-----PLAGLTALTNLELNENQLED------ 299 (384)
T ss_dssp G-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCCCCG-----GGTTCTTCSEEECCSSCCSC------
T ss_pred c-hhhcccccchhccccCc-cCCCCc-ccccccCCEeeccCc-ccCCCC-----cccccccccccccccccccc------
Confidence 3 45667777777777763 444432 223347777777763 454432 34556666666666654221
Q ss_pred CccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCccc
Q 007138 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 486 ~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l 565 (616)
...+..++++++|++++| .++.++... .+++|++|++++| .++.++ .+..+++|++|++++ ++++++
T Consensus 300 ~~~~~~~~~l~~L~ls~n--~l~~l~~l~--------~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~-N~l~~l 366 (384)
T d2omza2 300 ISPISNLKNLTYLTLYFN--NISDISPVS--------SLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGH-NQISDL 366 (384)
T ss_dssp CGGGGGCTTCSEEECCSS--CCSCCGGGG--------GCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCS-SCCCBC
T ss_pred ccccchhcccCeEECCCC--CCCCCcccc--------cCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCC-CcCCCC
Confidence 124566788888888886 566665422 5788999999885 677777 577888999999987 678887
Q ss_pred CCCCCcCCcceEEEcCC
Q 007138 566 PEKGLPSSLLQLQIYCC 582 (616)
Q Consensus 566 ~~~~~~~~L~~L~i~~c 582 (616)
++...+++|++|+++++
T Consensus 367 ~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 367 TPLANLTRITQLGLNDQ 383 (384)
T ss_dssp GGGTTCTTCSEEECCCE
T ss_pred hhhccCCCCCEeeCCCC
Confidence 76555778888888753
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=8.4e-17 Score=162.55 Aligned_cols=341 Identities=15% Similarity=0.157 Sum_probs=221.3
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 218 (616)
.+.+|+.|.+.++..... .-+..+++|++|+++++. ++.+++ +.++ ++|++|++++|.. ..+
T Consensus 42 ~l~~l~~L~l~~~~I~~l------~gl~~L~nL~~L~Ls~N~-l~~l~~------l~~L----~~L~~L~L~~n~i-~~i 103 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQ-LTDITP------LKNL----TKLVDILMNNNQI-ADI 103 (384)
T ss_dssp HHTTCCEEECCSSCCCCC------TTGGGCTTCCEEECCSSC-CCCCGG------GTTC----TTCCEEECCSSCC-CCC
T ss_pred HhCCCCEEECCCCCCCCc------cccccCCCCCEEeCcCCc-CCCCcc------ccCC----ccccccccccccc-ccc
Confidence 467899999988765432 235789999999999974 777642 5566 8999999999986 555
Q ss_pred ccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCC
Q 007138 219 PQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPP 298 (616)
Q Consensus 219 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 298 (616)
+. ++.+++|+.|+++++ ....++.......+.......+. +........ ............. .....+ ...+
T Consensus 104 ~~-l~~l~~L~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~---~~~~ 175 (384)
T d2omza2 104 TP-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFGNQV-TDLKPL---ANLT 175 (384)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGGGTT-CTTCSEEEEEESC-CCCGGG---TTCT
T ss_pred cc-ccccccccccccccc-ccccccccccccccccccccccc-ccccccccc-ccccccccccccc-chhhhh---cccc
Confidence 54 889999999999887 46666655556666666665543 222222110 1111122221111 111111 2222
Q ss_pred CccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCc
Q 007138 299 SLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL 378 (616)
Q Consensus 299 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~ 378 (616)
.........+. ... ..... .+++++.+.++++ .++.+.+.... ++|++|++++|...
T Consensus 176 ~~~~~~~~~~~-~~~---~~~~~-----~l~~~~~l~l~~n-~i~~~~~~~~~-------------~~L~~L~l~~n~l~ 232 (384)
T d2omza2 176 TLERLDISSNK-VSD---ISVLA-----KLTNLESLIATNN-QISDITPLGIL-------------TNLDELSLNGNQLK 232 (384)
T ss_dssp TCCEEECCSSC-CCC---CGGGG-----GCTTCSEEECCSS-CCCCCGGGGGC-------------TTCCEEECCSSCCC
T ss_pred ccccccccccc-ccc---ccccc-----cccccceeeccCC-ccCCCCccccc-------------CCCCEEECCCCCCC
Confidence 22333322221 111 11122 2577888888873 34432222111 78889999888543
Q ss_pred hhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhH
Q 007138 379 ESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYM 458 (616)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 458 (616)
.++ .+..+++|+.+++++|. +..++ .+..+++|+.|+++++. +..++. ...++.++.+++..+ .+++.
T Consensus 233 -~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~l~~l~~~~n-~l~~~----- 300 (384)
T d2omza2 233 -DIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDI----- 300 (384)
T ss_dssp -CCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCC-----
T ss_pred -Ccc-hhhcccccchhccccCc-cCCCC-cccccccCCEeeccCcc-cCCCCc-ccccccccccccccc-ccccc-----
Confidence 333 46778899999999876 44443 37788899999998874 444432 233447888888874 55543
Q ss_pred hhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccc
Q 007138 459 IALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL 538 (616)
Q Consensus 459 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 538 (616)
..+..+++++.+++++|.... ...+..+++|++|++++| .++.++.-. .+++|++|++++| .+
T Consensus 301 ~~~~~~~~l~~L~ls~n~l~~------l~~l~~l~~L~~L~L~~n--~l~~l~~l~--------~l~~L~~L~l~~N-~l 363 (384)
T d2omza2 301 SPISNLKNLTYLTLYFNNISD------ISPVSSLTKLQRLFFANN--KVSDVSSLA--------NLTNINWLSAGHN-QI 363 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCSC------CGGGGGCTTCCEEECCSS--CCCCCGGGG--------GCTTCCEEECCSS-CC
T ss_pred cccchhcccCeEECCCCCCCC------CcccccCCCCCEEECCCC--CCCCChhHc--------CCCCCCEEECCCC-cC
Confidence 246778889999999886331 124688999999999997 677776433 5899999999984 68
Q ss_pred cccccccccCccccEEEecC
Q 007138 539 ERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 539 ~~i~~~~~~~~~L~~L~l~~ 558 (616)
+.+++ +.++++|++|+|++
T Consensus 364 ~~l~~-l~~l~~L~~L~L~~ 382 (384)
T d2omza2 364 SDLTP-LANLTRITQLGLND 382 (384)
T ss_dssp CBCGG-GTTCTTCSEEECCC
T ss_pred CCChh-hccCCCCCEeeCCC
Confidence 88874 88999999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.70 E-value=3.7e-17 Score=160.14 Aligned_cols=252 Identities=17% Similarity=0.158 Sum_probs=185.2
Q ss_pred CccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCc
Q 007138 299 SLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL 378 (616)
Q Consensus 299 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~ 378 (616)
+++.|+++++..-....+|..+.. +++|++|++++++++. +.+|..+..+ ++|++|++++|...
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~-----L~~L~~L~Ls~~N~l~-----g~iP~~i~~L------~~L~~L~Ls~N~l~ 114 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLAN-----LPYLNFLYIGGINNLV-----GPIPPAIAKL------TQLHYLYITHTNVS 114 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG-----CTTCSEEEEEEETTEE-----SCCCGGGGGC------TTCSEEEEEEECCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhc-----Cccccccccccccccc-----cccccccccc------cccchhhhcccccc
Confidence 566777777633333334666665 8889999998877666 3456666666 89999999999877
Q ss_pred hhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCc-eEEEccCCcccccchhhh
Q 007138 379 ESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKL-RRLDISDCKRLEGGFHRY 457 (616)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~c~~l~~~~~~~ 457 (616)
+..+..+..+..|+.+++++|.....+|..+..+++|+.+++++|.....+|.....+..+ +.+++++ +++++..|.
T Consensus 115 ~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~- 192 (313)
T d1ogqa_ 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPP- 192 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCG-
T ss_pred ccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccc-ccccccccc-
Confidence 7777778888899999999998888888899999999999999986555677665555454 7777776 678887665
Q ss_pred HhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcc
Q 007138 458 MIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN 537 (616)
Q Consensus 458 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 537 (616)
.+.++..+ .+++..+... ...+..+..+++|+.+++.+| .+...+... ..+++|+.|++++|..
T Consensus 193 --~~~~l~~~-~l~l~~~~~~----~~~~~~~~~~~~l~~l~~~~~--~l~~~~~~~-------~~~~~L~~L~Ls~N~l 256 (313)
T d1ogqa_ 193 --TFANLNLA-FVDLSRNMLE----GDASVLFGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRNNRI 256 (313)
T ss_dssp --GGGGCCCS-EEECCSSEEE----ECCGGGCCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCSSCC
T ss_pred --cccccccc-cccccccccc----ccccccccccccccccccccc--ccccccccc-------ccccccccccCccCee
Confidence 33444433 5666665421 112234567889999999985 444333333 2689999999999654
Q ss_pred ccccccccccCccccEEEecCCCCCc-ccCCCCCcCCcceEEEcCCchh
Q 007138 538 LERLSSSIVDLQNLTELVLVNCPKLK-YFPEKGLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 538 l~~i~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~i~~c~~l 585 (616)
...+|..+.++++|++|++++ +++. .+|..+.+++|+.+++.+++.+
T Consensus 257 ~g~iP~~l~~L~~L~~L~Ls~-N~l~g~iP~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 257 YGTLPQGLTQLKFLHSLNVSF-NNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCS-SEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cccCChHHhCCCCCCEEECcC-CcccccCCCcccCCCCCHHHhCCCccc
Confidence 448999999999999999999 6777 7887666888999988888754
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.67 E-value=3.7e-15 Score=145.09 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=127.5
Q ss_pred CCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCC
Q 007138 169 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALP 248 (616)
Q Consensus 169 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 248 (616)
+++++|+++++. ++.+++. .+..+ ++|++|++++|....-.|..+..+++|++|++++| .++.+|. ...
T Consensus 31 ~~l~~L~Ls~N~-i~~l~~~----~f~~l----~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~-~~~ 99 (305)
T d1xkua_ 31 PDTALLDLQNNK-ITEIKDG----DFKNL----KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE-KMP 99 (305)
T ss_dssp TTCCEEECCSSC-CCCBCTT----TTTTC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS-SCC
T ss_pred CCCCEEECcCCc-CCCcChh----Hhhcc----ccccccccccccccccchhhhhCCCccCEecccCC-ccCcCcc-chh
Confidence 456666666542 5554432 23333 55666666665553333444555666666666655 3455543 233
Q ss_pred CCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccC
Q 007138 249 SKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTS 328 (616)
Q Consensus 249 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 328 (616)
+.++.|.+.++. +..++.... ........+....+...........+. .+
T Consensus 100 ~~l~~L~~~~n~-l~~l~~~~~------------------------~~~~~~~~l~~~~n~~~~~~~~~~~~~-----~l 149 (305)
T d1xkua_ 100 KTLQELRVHENE-ITKVRKSVF------------------------NGLNQMIVVELGTNPLKSSGIENGAFQ-----GM 149 (305)
T ss_dssp TTCCEEECCSSC-CCBBCHHHH------------------------TTCTTCCEEECCSSCCCGGGBCTTGGG-----GC
T ss_pred hhhhhhhccccc-hhhhhhhhh------------------------hccccccccccccccccccCCCccccc-----cc
Confidence 455555555543 222222111 112233333333332111111111122 25
Q ss_pred CCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccccc
Q 007138 329 CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSG 408 (616)
Q Consensus 329 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 408 (616)
++|+.++++++. +.. ++...+ ++++.|+++++......+..+..++.++.|++++|......+..
T Consensus 150 ~~L~~l~l~~n~-l~~-l~~~~~-------------~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~ 214 (305)
T d1xkua_ 150 KKLSYIRIADTN-ITT-IPQGLP-------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214 (305)
T ss_dssp TTCCEEECCSSC-CCS-CCSSCC-------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCccccccCC-ccc-cCcccC-------------CccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc
Confidence 667777777642 222 221111 67888888888777666677778888888888887654444556
Q ss_pred ccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccc
Q 007138 409 LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 453 (616)
+.++++|++|++++| .+..+|.....+++|++|++++ ++++.+
T Consensus 215 ~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i 257 (305)
T d1xkua_ 215 LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAI 257 (305)
T ss_dssp GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCC
T ss_pred ccccccceeeecccc-cccccccccccccCCCEEECCC-CccCcc
Confidence 778888899998888 6677877666777888998888 467654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.66 E-value=2.1e-16 Score=154.64 Aligned_cols=268 Identities=15% Similarity=0.183 Sum_probs=160.3
Q ss_pred CCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCcc-ccchhhhhhHHh
Q 007138 117 SQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQ-SLVAEEEKDQQQ 195 (616)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~l~ 195 (616)
.|.+|+|...... ..++.|++.+..-... ...+..++.+++|++|+++++.++. .+|.. +.
T Consensus 37 ~w~gv~C~~~~~~-----------~~v~~L~L~~~~l~g~--~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-----i~ 98 (313)
T d1ogqa_ 37 TWLGVLCDTDTQT-----------YRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPPA-----IA 98 (313)
T ss_dssp CSTTEEECCSSSC-----------CCEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCGG-----GG
T ss_pred cCCCeEEeCCCCc-----------EEEEEEECCCCCCCCC--CCCChHHhcCccccccccccccccccccccc-----cc
Confidence 4888888653322 3566777766533321 0133456788888888887765555 44443 66
Q ss_pred hhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCccccchhhccCCC
Q 007138 196 QLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKNIWISTCDALKSLPEAWMCDTN 274 (616)
Q Consensus 196 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 274 (616)
++ ++|++|++++|...+..+..+..+.+|+.+++++|.....+| .+..++.|+.+++++|.....+|..+ ..+
T Consensus 99 ~L----~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l 172 (313)
T d1ogqa_ 99 KL----TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSF 172 (313)
T ss_dssp GC----TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCC
T ss_pred cc----cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccc--ccc
Confidence 66 788888888877655556667777888888887775555554 44557777788877776444455433 222
Q ss_pred CCc-cEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcc
Q 007138 275 SSL-EILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPA 353 (616)
Q Consensus 275 ~~L-~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 353 (616)
..+ +.+.++++. +.... +..+.. .....+++..+... +..|.
T Consensus 173 ~~l~~~l~~~~n~-l~~~~------------------------~~~~~~------l~~~~l~l~~~~~~------~~~~~ 215 (313)
T d1ogqa_ 173 SKLFTSMTISRNR-LTGKI------------------------PPTFAN------LNLAFVDLSRNMLE------GDASV 215 (313)
T ss_dssp CTTCCEEECCSSE-EEEEC------------------------CGGGGG------CCCSEEECCSSEEE------ECCGG
T ss_pred ccccccccccccc-ccccc------------------------cccccc------cccccccccccccc------ccccc
Confidence 222 444443321 11110 111111 12334444442111 11222
Q ss_pred cccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC
Q 007138 354 TLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG 433 (616)
Q Consensus 354 ~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 433 (616)
....+ ++++.+++.++.....++ .+..+++|+.|++++|...+.+|..+.++++|++|++++|.....+|. .
T Consensus 216 ~~~~~------~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 287 (313)
T d1ogqa_ 216 LFGSD------KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp GCCTT------SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred ccccc------cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence 22222 677888887776554443 567778888888888876667888888888888888888743336664 3
Q ss_pred CCCCCceEEEccCCcccccc
Q 007138 434 LPCAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 434 ~~~~~L~~L~l~~c~~l~~~ 453 (616)
..+++|+.+++.+++.+.|.
T Consensus 288 ~~L~~L~~l~l~~N~~l~g~ 307 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccCCCCCHHHhCCCccccCC
Confidence 45567888888886667664
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.65 E-value=1.1e-14 Score=141.69 Aligned_cols=151 Identities=14% Similarity=0.219 Sum_probs=90.1
Q ss_pred CCCccEEEccccccc--ccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 388 NTSLETISIERCGNL--KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 388 ~~~L~~L~l~~~~~l--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
...+..++...+... ...+..+..+++|+.+++.+| .+..++....+ +|+.|+++++ ..++..+.
T Consensus 123 ~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~--~L~~L~l~~n-~~~~~~~~--------- 189 (305)
T d1xkua_ 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP--SLTELHLDGN-KITKVDAA--------- 189 (305)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCT--TCSEEECTTS-CCCEECTG---------
T ss_pred cccccccccccccccccCCCccccccccccCccccccC-CccccCcccCC--ccCEEECCCC-cCCCCChh---------
Confidence 344455555444322 122334556677777777776 44555554433 7888888774 33333221
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccccc
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSI 545 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 545 (616)
.+..++.+++|++++| .++.++... +..+++|++|++++| +++.+|..+
T Consensus 190 ----------------------~~~~~~~l~~L~~s~n--~l~~~~~~~------~~~l~~L~~L~L~~N-~L~~lp~~l 238 (305)
T d1xkua_ 190 ----------------------SLKGLNNLAKLGLSFN--SISAVDNGS------LANTPHLRELHLNNN-KLVKVPGGL 238 (305)
T ss_dssp ----------------------GGTTCTTCCEEECCSS--CCCEECTTT------GGGSTTCCEEECCSS-CCSSCCTTT
T ss_pred ----------------------Hhhccccccccccccc--ccccccccc------ccccccceeeecccc-ccccccccc
Confidence 3455566666766664 444443322 124677777777774 577777777
Q ss_pred ccCccccEEEecCCCCCcccCCCC--------CcCCcceEEEcCCc
Q 007138 546 VDLQNLTELVLVNCPKLKYFPEKG--------LPSSLLQLQIYCCP 583 (616)
Q Consensus 546 ~~~~~L~~L~l~~c~~l~~l~~~~--------~~~~L~~L~i~~c~ 583 (616)
..+++|++|++++ ++++.++... ..++|+.|+++++|
T Consensus 239 ~~l~~L~~L~Ls~-N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 239 ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccccCCCEEECCC-CccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 7778888888887 5677765422 14678888888776
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.59 E-value=3.1e-13 Score=134.07 Aligned_cols=113 Identities=27% Similarity=0.361 Sum_probs=65.6
Q ss_pred CCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCC
Q 007138 169 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALP 248 (616)
Q Consensus 169 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 248 (616)
.++++|+++++. ++.+|+. +++|++|++++|.. +++|.. ..+|++|++++| .++.++. .+
T Consensus 38 ~~l~~LdLs~~~-L~~lp~~------------~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~l~~n-~l~~l~~--lp 97 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSSLPEL------------PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNN-NLKALSD--LP 97 (353)
T ss_dssp HTCSEEECTTSC-CSCCCSC------------CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSS-CCSCCCS--CC
T ss_pred cCCCEEEeCCCC-CCCCCCC------------CCCCCEEECCCCCC-cccccc---hhhhhhhhhhhc-ccchhhh--hc
Confidence 467777777754 5555422 26777777777654 566654 356777777776 3555543 24
Q ss_pred CCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecC
Q 007138 249 SKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDC 308 (616)
Q Consensus 249 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 308 (616)
+.|++|++++|. +..++.. ..+++|++++++++. +...+ .....+..+.+..+
T Consensus 98 ~~L~~L~L~~n~-l~~lp~~---~~l~~L~~L~l~~~~-~~~~~--~~~~~l~~l~~~~~ 150 (353)
T d1jl5a_ 98 PLLEYLGVSNNQ-LEKLPEL---QNSSFLKIIDVDNNS-LKKLP--DLPPSLEFIAAGNN 150 (353)
T ss_dssp TTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSS
T ss_pred cccccccccccc-cccccch---hhhccceeecccccc-ccccc--cccccccchhhccc
Confidence 567777777765 5566543 455677777776553 22222 22334555555444
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.9e-13 Score=129.80 Aligned_cols=174 Identities=22% Similarity=0.207 Sum_probs=113.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
+++++|++++|......+..+..+++|+.|++++|. ++.++. +..+++|++|++++| .+..++.....+++|+++++
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l 107 (266)
T d1p9ag_ 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (266)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-ccccccccccccccc-cccccccccccccccccccc
Confidence 567777777775443333456777788888887764 555553 456778888888777 45555555556667777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
+++ .+....+ ..+..+.+++.|++++| .+..++... +..+
T Consensus 108 ~~~-~~~~~~~-------------------------------~~~~~l~~l~~L~l~~n--~l~~l~~~~------~~~l 147 (266)
T d1p9ag_ 108 SFN-RLTSLPL-------------------------------GALRGLGELQELYLKGN--ELKTLPPGL------LTPT 147 (266)
T ss_dssp CSS-CCCCCCS-------------------------------STTTTCTTCCEEECTTS--CCCCCCTTT------TTTC
T ss_pred ccc-ccceeec-------------------------------ccccccccccccccccc--ccceecccc------cccc
Confidence 774 3333221 13455677777777775 555555433 2356
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC-cCCcceEEEcCCc
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL-PSSLLQLQIYCCP 583 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c~ 583 (616)
++|+.+++++ ++++.++. .+..+++|++|++++ ++++++|.... +++|+.|+++++|
T Consensus 148 ~~l~~l~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 148 PKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ccchhccccc-ccccccCccccccccccceeeccc-CCCcccChhHCCCCCCCEEEecCCC
Confidence 7778888877 45666654 466778888888887 66777776433 5678888887754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.5e-13 Score=127.84 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=99.1
Q ss_pred CCCcEEEccCCCCCcccc-cccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEE
Q 007138 202 CRLEYLRLSNCEGLVKLP-QSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEIL 280 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 280 (616)
+++++|++++|.. +.+| ..+..+++|++|++++| .++.++..+.+++|++|++++|. +...+..+ ..+++|+.|
T Consensus 31 ~~l~~L~Ls~N~i-~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~L~~L 105 (266)
T d1p9ag_ 31 KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLG--QTLPALTVL 105 (266)
T ss_dssp TTCCEEECTTSCC-SEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSC-CSSCCCCT--TTCTTCCEE
T ss_pred cCCCEEECcCCcC-CCcCHHHhhccccccccccccc-ccccccccccccccccccccccc-cccccccc--ccccccccc
Confidence 6788888888765 5555 45788888888888887 57777766778888888888876 44433322 334555555
Q ss_pred EeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccccccccc
Q 007138 281 SIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEV 360 (616)
Q Consensus 281 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~ 360 (616)
+++++. +..+. +..... +.++++|++
T Consensus 106 ~l~~~~------------------------~~~~~-~~~~~~-----l~~l~~L~l------------------------ 131 (266)
T d1p9ag_ 106 DVSFNR------------------------LTSLP-LGALRG-----LGELQELYL------------------------ 131 (266)
T ss_dssp ECCSSC------------------------CCCCC-SSTTTT-----CTTCCEEEC------------------------
T ss_pred cccccc------------------------cceee-cccccc-----ccccccccc------------------------
Confidence 554432 11110 000011 233344444
Q ss_pred CCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCce
Q 007138 361 GNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLR 440 (616)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 440 (616)
.++......+..+..+++++.+++++|......+..+..+++|++|++++| .++.+|...+.+++|+
T Consensus 132 ------------~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~ 198 (266)
T d1p9ag_ 132 ------------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLP 198 (266)
T ss_dssp ------------TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCS
T ss_pred ------------cccccceeccccccccccchhcccccccccccCccccccccccceeecccC-CCcccChhHCCCCCCC
Confidence 333222211223344556666666665433323334566677777777766 4556666666666777
Q ss_pred EEEccC
Q 007138 441 RLDISD 446 (616)
Q Consensus 441 ~L~l~~ 446 (616)
.|++++
T Consensus 199 ~L~L~~ 204 (266)
T d1p9ag_ 199 FAFLHG 204 (266)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 777776
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.47 E-value=1e-11 Score=122.83 Aligned_cols=314 Identities=25% Similarity=0.256 Sum_probs=172.0
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
.+++.|++.+..-.. ++ ...++|++|+++++ +++.+|.. +.+|+.|++++|.. +.++.
T Consensus 38 ~~l~~LdLs~~~L~~----lp----~~~~~L~~L~Ls~N-~l~~lp~~------------~~~L~~L~l~~n~l-~~l~~ 95 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS----LP----ELPPHLESLVASCN-SLTELPEL------------PQSLKSLLVDNNNL-KALSD 95 (353)
T ss_dssp HTCSEEECTTSCCSC----CC----SCCTTCSEEECCSS-CCSSCCCC------------CTTCCEEECCSSCC-SCCCS
T ss_pred cCCCEEEeCCCCCCC----CC----CCCCCCCEEECCCC-CCcccccc------------hhhhhhhhhhhccc-chhhh
Confidence 357788877764432 23 23578999999875 57776543 27899999999765 55553
Q ss_pred ccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCc
Q 007138 221 SSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSL 300 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L 300 (616)
. .+.|++|++++| .+..+|....+++|+.++++++. +...+. ....+..+.+..+. ..........+.+
T Consensus 96 l---p~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~~~-~~~~~~-----~~~~l~~l~~~~~~-~~~~~~l~~l~~l 164 (353)
T d1jl5a_ 96 L---PPLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNNS-LKKLPD-----LPPSLEFIAAGNNQ-LEELPELQNLPFL 164 (353)
T ss_dssp C---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSSCCCCTTCTTC
T ss_pred h---cccccccccccc-ccccccchhhhccceeecccccc-cccccc-----ccccccchhhcccc-ccccccccccccc
Confidence 2 246999999998 58888887789999999998876 333332 23556677766543 2222333445566
Q ss_pred cEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchh
Q 007138 301 KQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLES 380 (616)
Q Consensus 301 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~ 380 (616)
+.+.+.++.. ..+ +... ...+.+...+ ..+. .
T Consensus 165 ~~L~l~~n~~-~~~--~~~~--------~~~~~l~~~~-~~~~------------------------------------~ 196 (353)
T d1jl5a_ 165 TAIYADNNSL-KKL--PDLP--------LSLESIVAGN-NILE------------------------------------E 196 (353)
T ss_dssp CEEECCSSCC-SSC--CCCC--------TTCCEEECCS-SCCS------------------------------------S
T ss_pred eecccccccc-ccc--cccc--------cccccccccc-cccc------------------------------------c
Confidence 7777666532 111 1111 1122222222 1111 1
Q ss_pred hhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhh
Q 007138 381 IAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIA 460 (616)
Q Consensus 381 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 460 (616)
++ ....++.|+.+++++|.. ..++. ...++..+.+.++. +...+.. . +.+...++... ...+.
T Consensus 197 ~~-~~~~l~~L~~l~l~~n~~-~~~~~---~~~~l~~~~~~~~~-~~~~~~~-~--~~l~~~~~~~~-~~~~l------- 259 (353)
T d1jl5a_ 197 LP-ELQNLPFLTTIYADNNLL-KTLPD---LPPSLEALNVRDNY-LTDLPEL-P--QSLTFLDVSEN-IFSGL------- 259 (353)
T ss_dssp CC-CCTTCTTCCEEECCSSCC-SSCCS---CCTTCCEEECCSSC-CSCCCCC-C--TTCCEEECCSS-CCSEE-------
T ss_pred cc-cccccccccccccccccc-ccccc---cccccccccccccc-ccccccc-c--ccccccccccc-ccccc-------
Confidence 11 122333444444444321 11211 12233334443331 1111110 0 12333332221 11100
Q ss_pred hccc-ccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 461 LHNL-TNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 461 ~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
..+ ......++..+... .....+++|++|++++| .++.+|. .+++|+.|++++| +++
T Consensus 260 -~~l~~~~~~~~~~~~~~~--------~~~~~~~~L~~L~Ls~N--~l~~lp~----------~~~~L~~L~L~~N-~L~ 317 (353)
T d1jl5a_ 260 -SELPPNLYYLNASSNEIR--------SLCDLPPSLEELNVSNN--KLIELPA----------LPPRLERLIASFN-HLA 317 (353)
T ss_dssp -SCCCTTCCEEECCSSCCS--------EECCCCTTCCEEECCSS--CCSCCCC----------CCTTCCEEECCSS-CCS
T ss_pred -ccccchhcccccccCccc--------cccccCCCCCEEECCCC--ccCcccc----------ccCCCCEEECCCC-cCC
Confidence 000 01111111111100 01234578999999997 6777775 4689999999984 688
Q ss_pred ccccccccCccccEEEecCCCCCcccCCCCCcCCcceEEEc
Q 007138 540 RLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIY 580 (616)
Q Consensus 540 ~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~ 580 (616)
++|. .+++|++|++++| .++++|. .+..|+.|.+.
T Consensus 318 ~l~~---~~~~L~~L~L~~N-~L~~lp~--~~~~L~~L~~~ 352 (353)
T d1jl5a_ 318 EVPE---LPQNLKQLHVEYN-PLREFPD--IPESVEDLRMN 352 (353)
T ss_dssp CCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECC
T ss_pred cccc---ccCCCCEEECcCC-cCCCCCc--cccccCeeECc
Confidence 8884 3568999999995 5999987 67789998875
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.4e-13 Score=126.98 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=28.9
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
.+..+++|+.+++++| ++..+.... +..+++|++|++++ +.+..++. .+..+++|++|++++
T Consensus 172 ~f~~l~~L~~l~l~~N--~l~~i~~~~------f~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQN--RVAHVHPHA------FRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLND 234 (284)
T ss_dssp TTTTCTTCCEEECCSS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred hhccccccchhhhhhc--cccccChhH------hhhhhhcccccccc-cccccccccccccccccCEEEecC
Confidence 3445555555555554 333332111 22445555555555 23444432 444555555555555
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=3.2e-12 Score=117.97 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=50.7
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+|+.|++.+|.. ++++ .+..+++|++|++++| .+..+..+..+++|+.+++++|. +++++.. ..+++|+.+.
T Consensus 41 ~~L~~L~l~~~~i-~~l~-~l~~l~~L~~L~ls~n-~i~~~~~l~~l~~l~~l~~~~n~-~~~i~~l---~~l~~L~~l~ 113 (227)
T d1h6ua2 41 DGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVSAI---AGLQSIKTLD 113 (227)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCGGG---TTCTTCCEEE
T ss_pred CCcCEEECCCCCC-Ccch-hHhcCCCCcEeecCCc-eeecccccccccccccccccccc-ccccccc---cccccccccc
Confidence 5566666666543 4443 4556666666666665 34455445556666666666554 3444432 3445555555
Q ss_pred eccCCCCccccccCCCCCccEEEEecC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDC 308 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~ 308 (616)
++++. ...+......+.++.+.++.+
T Consensus 114 l~~~~-~~~~~~~~~~~~~~~l~~~~~ 139 (227)
T d1h6ua2 114 LTSTQ-ITDVTPLAGLSNLQVLYLDLN 139 (227)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECCSS
T ss_pred ccccc-ccccchhccccchhhhhchhh
Confidence 55443 222222233344444544443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.6e-13 Score=129.90 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=26.5
Q ss_pred CCCCccEEEEcCCCCCCC--CCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccC
Q 007138 224 SLSSLREIEICKCSSLVS--FPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGC 285 (616)
Q Consensus 224 ~l~~L~~L~l~~~~~l~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 285 (616)
.+++|++|++++|..+++ +..+..+++|++|++++|..+++...... ..+++|+.|++++|
T Consensus 173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~ 235 (284)
T d2astb2 173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI 235 (284)
T ss_dssp HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC
Confidence 345555555555444432 12333345555555555544433221111 23355555555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5e-12 Score=121.06 Aligned_cols=201 Identities=16% Similarity=0.220 Sum_probs=105.8
Q ss_pred CCCcEEEccCCCCCccccc-ccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
+.+++|++++|.. +.+|. .+.++++|++|+++++ .++.++. ...+..++.+.+..+..++.++.... ..+++|+
T Consensus 32 ~~~~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~l~~L~ 108 (284)
T d1ozna_ 32 AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLH 108 (284)
T ss_dssp TTCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTCC
T ss_pred CCCCEEECcCCcC-CCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccchhh-cccccCC
Confidence 5677777777665 55554 4677777777777776 3555442 23366677776666555655543321 3446666
Q ss_pred EEEeccCCCCccccc--cCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccccc
Q 007138 279 ILSIHGCRSLTYIAA--VQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLE 356 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 356 (616)
+|+++++. +..+.. ....++|+.++++++ .++.+ +. ..+ .
T Consensus 109 ~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N-~l~~i--~~------------------------------~~f----~ 150 (284)
T d1ozna_ 109 TLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQAL--PD------------------------------DTF----R 150 (284)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC--CT------------------------------TTT----T
T ss_pred EEecCCcc-cccccccccchhcccchhhhccc-ccccc--Ch------------------------------hHh----c
Confidence 66666543 222111 123344455554443 23322 11 111 1
Q ss_pred ccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCC-CCCC
Q 007138 357 SLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE-GGLP 435 (616)
Q Consensus 357 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~ 435 (616)
.+ ++|+.|++++|......+..+..+++|+.+++.+|......|..+..+++|++|++++|. +..++. ....
T Consensus 151 ~~------~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~ 223 (284)
T d1ozna_ 151 DL------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAP 223 (284)
T ss_dssp TC------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTT
T ss_pred cc------cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc-ccccccccccc
Confidence 11 445555555554333233445556666666666665554445566666666677666663 333332 2234
Q ss_pred CCCceEEEccCCcccc
Q 007138 436 CAKLRRLDISDCKRLE 451 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~ 451 (616)
+++|+++++++ +.+.
T Consensus 224 ~~~L~~L~l~~-N~l~ 238 (284)
T d1ozna_ 224 LRALQYLRLND-NPWV 238 (284)
T ss_dssp CTTCCEEECCS-SCEE
T ss_pred ccccCEEEecC-CCCC
Confidence 45667777766 3343
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=9.9e-14 Score=132.89 Aligned_cols=89 Identities=13% Similarity=0.234 Sum_probs=50.1
Q ss_pred cCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--C
Q 007138 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--E 244 (616)
Q Consensus 167 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~ 244 (616)
...+|++|++++|. ++. ..+..+...+++|++|++++|......+..++.+++|++|++++|..+++.. .
T Consensus 44 ~~~~L~~LdLs~~~-i~~-------~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~ 115 (284)
T d2astb2 44 SPFRVQHMDLSNSV-IEV-------STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 115 (284)
T ss_dssp CCBCCCEEECTTCE-ECH-------HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred cCCCCCEEECCCCc-cCH-------HHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch
Confidence 34577777777664 221 1233333344777777777776544555556667777777777765554321 1
Q ss_pred -CCCCCCCcEEEccCCCCcc
Q 007138 245 -VALPSKLKNIWISTCDALK 263 (616)
Q Consensus 245 -~~~~~~L~~L~l~~~~~l~ 263 (616)
...+++|++|++++|..+.
T Consensus 116 l~~~~~~L~~L~ls~c~~~~ 135 (284)
T d2astb2 116 LLSSCSRLDELNLSWCFDFT 135 (284)
T ss_dssp HHHHCTTCCEEECCCCTTCC
T ss_pred hhHHHHhccccccccccccc
Confidence 1225566666666655443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.38 E-value=5.7e-12 Score=116.27 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=34.5
Q ss_pred ccCCCcceEeeccCCCcccccC--CCCCCccEEeecCCcchh-hhhcCCCCccEEEeCCCccee
Q 007138 47 EWFPKLRELHIISCSKLQGTFP--EHLPALEMLVIEGCEELL-VSVASLPALCKFEIGGCKKVV 107 (616)
Q Consensus 47 ~~~~~L~~L~l~~c~~l~~~~p--~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~L~l~~~~~~~ 107 (616)
..+.+|+.|++.+|. ++ .++ ..+++|++|++++|.-.. ..+..+++|++++++++....
T Consensus 38 ~~l~~L~~L~l~~~~-i~-~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~ 99 (227)
T d1h6ua2 38 ADLDGITTLSAFGTG-VT-TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN 99 (227)
T ss_dssp HHHHTCCEEECTTSC-CC-CCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC
T ss_pred HHcCCcCEEECCCCC-CC-cchhHhcCCCCcEeecCCceeeccccccccccccccccccccccc
Confidence 447777777777774 43 333 246666666666664211 335666666666666665443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.30 E-value=2.2e-11 Score=110.54 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+|++|++++|.. +.++ .+..+++|++|++++| .+++++....+++|++|++++|. ++.++.. ..+++|+.++
T Consensus 46 ~~L~~L~l~~~~i-~~l~-~l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n~-i~~l~~l---~~l~~L~~L~ 118 (210)
T d1h6ta2 46 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSSL---KDLKKLKSLS 118 (210)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGGG---TTCTTCCEEE
T ss_pred cCccEEECcCCCC-CCch-hHhhCCCCCEEeCCCc-cccCccccccCcccccccccccc-ccccccc---cccccccccc
Confidence 5667777777654 3443 3566777777777776 45666655566777777777664 4554432 4445566666
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++. ...++....+ ++++.++++++ .+++.. ....+
T Consensus 119 l~~~~-~~~~~~l~~l-------------------------------~~l~~l~~~~n-~l~~~~-------~~~~l--- 155 (210)
T d1h6ta2 119 LEHNG-ISDINGLVHL-------------------------------PQLESLYLGNN-KITDIT-------VLSRL--- 155 (210)
T ss_dssp CTTSC-CCCCGGGGGC-------------------------------TTCCEEECCSS-CCCCCG-------GGGGC---
T ss_pred ccccc-cccccccccc-------------------------------ccccccccccc-cccccc-------ccccc---
Confidence 55543 2222222222 33444444331 111100 01111
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEecc
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWN 422 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~ 422 (616)
++|+.+++++|... .++ .+..+++|++|++++|. ++.++ .+.++++|++|++++
T Consensus 156 ---~~L~~l~l~~n~l~-~i~-~l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 156 ---TKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp ---TTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEE
T ss_pred ---cccccccccccccc-ccc-cccCCCCCCEEECCCCC-CCCCh-hhcCCCCCCEEEccC
Confidence 55666666655433 232 25566777777777764 55554 466777777777754
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.30 E-value=1.5e-11 Score=110.75 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=86.2
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
+++++|+++++... ++. .+..+++|+.|++++|. ++.++ .+.++++|++|++++|. +..++. ...+++|+.+++
T Consensus 40 ~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~-l~~~~-~l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQ-LTDIT-PLKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCC-Ccc-ccccCCCcCcCcccccc-ccCcc-cccCCcccccccccccc-cccccc-cccccccccccc
Confidence 55666666665332 222 34556677777776654 44443 26666677777776653 333332 223346666666
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++|... .. ..+..+++|+.|++++| .+..++... .+
T Consensus 114 ~~~~~~-~~---------------------------------~~~~~l~~L~~L~l~~n--~l~~~~~l~--------~~ 149 (199)
T d2omxa2 114 FNNQIT-DI---------------------------------DPLKNLTNLNRLELSSN--TISDISALS--------GL 149 (199)
T ss_dssp CSSCCC-CC---------------------------------GGGTTCTTCSEEECCSS--CCCCCGGGT--------TC
T ss_pred cccccc-cc---------------------------------cccchhhhhHHhhhhhh--hhccccccc--------cc
Confidence 654322 11 13345566666666664 344444322 45
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCCcCCcceE
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQL 577 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 577 (616)
++|+.|++.+| .++.++ .+..+++|++|++++ +++++++....+++|++|
T Consensus 150 ~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~-N~i~~i~~l~~L~~L~~L 199 (199)
T d2omxa2 150 TSLQQLNFSSN-QVTDLK-PLANLTTLERLDISS-NKVSDISVLAKLTNLESL 199 (199)
T ss_dssp TTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCS-SCCCCCGGGGGCTTCSEE
T ss_pred ccccccccccc-cccCCc-cccCCCCCCEEECCC-CCCCCCccccCCCCCCcC
Confidence 66667776663 455555 356667777777776 356665543334555543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.29 E-value=1.5e-11 Score=111.66 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=42.0
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
+..+++|+.+++++| .+...+... .+++|+.++++++ .+..++ .+..+++|++|++++ +.+++++..
T Consensus 130 l~~l~~l~~l~~~~n--~l~~~~~~~--------~l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~-N~i~~l~~l 196 (210)
T d1h6ta2 130 LVHLPQLESLYLGNN--KITDITVLS--------RLTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSK-NHISDLRAL 196 (210)
T ss_dssp GGGCTTCCEEECCSS--CCCCCGGGG--------GCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCS-SCCCBCGGG
T ss_pred ccccccccccccccc--ccccccccc--------ccccccccccccc-cccccc-cccCCCCCCEEECCC-CCCCCChhh
Confidence 344555555555554 333333322 3556666666653 345554 355566666666666 356665543
Q ss_pred CCcCCcceEEEc
Q 007138 569 GLPSSLLQLQIY 580 (616)
Q Consensus 569 ~~~~~L~~L~i~ 580 (616)
..+++|++|+++
T Consensus 197 ~~l~~L~~L~Ls 208 (210)
T d1h6ta2 197 AGLKNLDVLELF 208 (210)
T ss_dssp TTCTTCSEEEEE
T ss_pred cCCCCCCEEEcc
Confidence 345566666664
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.28 E-value=2.3e-11 Score=109.44 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccc
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLP 266 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~ 266 (616)
++|+.|++++|.. ..++ .+..+++|++|++.+| .+++++.+..+++|++|++++|. +++++
T Consensus 128 ~~L~~L~l~~n~l-~~~~-~l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N~-i~~i~ 188 (199)
T d2omxa2 128 TNLNRLELSSNTI-SDIS-ALSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDISSNK-VSDIS 188 (199)
T ss_dssp TTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG
T ss_pred hhhHHhhhhhhhh-cccc-cccccccccccccccc-cccCCccccCCCCCCEEECCCCC-CCCCc
Confidence 5566666666543 3333 3555666666666665 35555555556666666666654 44444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=7.7e-11 Score=109.70 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=54.4
Q ss_pred cccccC-CccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCccc
Q 007138 488 GFHRFS-SLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 488 ~~~~l~-~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l 565 (616)
.+..++ .++.|++.+| .++.++... ...++++++....+++++.+|. .+..+++|++|++++ ++++.+
T Consensus 147 ~~~~~~~~l~~L~l~~n--~l~~i~~~~-------~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l 216 (242)
T d1xwdc1 147 SFVGLSFESVILWLNKN--GIQEIHNCA-------FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSL 216 (242)
T ss_dssp SSTTSBSSCEEEECCSS--CCCEECTTT-------TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCC
T ss_pred ccccccccceeeecccc--ccccccccc-------ccchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCcc
Confidence 344443 6777888775 666665543 2456777776666678888876 467889999999988 678888
Q ss_pred CCCCCcCCcceEEE
Q 007138 566 PEKGLPSSLLQLQI 579 (616)
Q Consensus 566 ~~~~~~~~L~~L~i 579 (616)
|... +.+|..|+.
T Consensus 217 ~~~~-~~~l~~L~~ 229 (242)
T d1xwdc1 217 PSYG-LENLKKLRA 229 (242)
T ss_dssp CSSS-CTTCCEEES
T ss_pred CHHH-HcCCccccc
Confidence 8743 334444443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=4.3e-10 Score=104.51 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=40.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 443 (616)
..++.+++.++.. ..++......++++.+...++..++.+|. .+.++++|++|++++| .++.+|...+. ++..|.
T Consensus 153 ~~l~~L~l~~n~l-~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~--~l~~L~ 228 (242)
T d1xwdc1 153 FESVILWLNKNGI-QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE--NLKKLR 228 (242)
T ss_dssp SSCEEEECCSSCC-CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSCT--TCCEEE
T ss_pred ccceeeecccccc-cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHHc--CCcccc
Confidence 3455566655432 23444444445666665555555666654 3566777777777766 35556554433 444443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.4e-12 Score=132.40 Aligned_cols=189 Identities=23% Similarity=0.148 Sum_probs=91.7
Q ss_pred CcccEEEecCCCCchh-----hhhhccCCCCccEEEccccccccc----ccccccCCCCCcEEEeccCCCCc----ccCC
Q 007138 365 PSLKSLYVYGCSKLES-----IAERLDNNTSLETISIERCGNLKI----LPSGLHNLRQLQGIKIWNCGNLV----SFPE 431 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~----~~~~ 431 (616)
+.++.+.+.++..... +.........++.+++++|..... ....+...+.++.+++++|+... .+..
T Consensus 226 ~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~ 305 (460)
T d1z7xw1 226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 305 (460)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc
Confidence 4566666666544321 122233455677777776653322 12233456677777777663211 0100
Q ss_pred C-CCCCCCceEEEccCCcccccchhhhHh-hhcccccceeeecCCChHHHHHhhhcCcccc-ccCCccEEEEecCCCccc
Q 007138 432 G-GLPCAKLRRLDISDCKRLEGGFHRYMI-ALHNLTNLHSLYIGGNMEIWKSMIERGRGFH-RFSSLRHLTIRGCDDDMV 508 (616)
Q Consensus 432 ~-~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~i~~~~~~l~ 508 (616)
. ......|+.+++++|. ++......++ .+...++|+.|+|++|.....+.......+. ..+.|++|++++| .++
T Consensus 306 ~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n--~i~ 382 (460)
T d1z7xw1 306 TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC--DVS 382 (460)
T ss_dssp HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCC
T ss_pred cccccccccccccccccc-hhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC--CCC
Confidence 0 0112267777777753 4333222222 3455567777777777643333222222222 3456788888875 332
Q ss_pred cccccccccCCCCCCCCccceEecccCccccc-----cccccc-cCccccEEEecCC
Q 007138 509 SFPLEDKRLGTALPLPASLTTLWISRFPNLER-----LSSSIV-DLQNLTELVLVNC 559 (616)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----i~~~~~-~~~~L~~L~l~~c 559 (616)
..... .+...+...++|++|+++++ .++. +...+. .-..|+.|++.++
T Consensus 383 ~~~~~--~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~ 436 (460)
T d1z7xw1 383 DSSCS--SLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI 436 (460)
T ss_dssp HHHHH--HHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred hHHHH--HHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence 21000 00011113577888888874 4543 111222 2336788888773
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.8e-11 Score=124.16 Aligned_cols=207 Identities=19% Similarity=0.189 Sum_probs=125.9
Q ss_pred cccEEEecCCCCch----hhhhhccCCCCccEEEccccccccc-----ccccccCCCCCcEEEeccCCCCccc----CCC
Q 007138 366 SLKSLYVYGCSKLE----SIAERLDNNTSLETISIERCGNLKI-----LPSGLHNLRQLQGIKIWNCGNLVSF----PEG 432 (616)
Q Consensus 366 ~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~ 432 (616)
....+.+..+.... .........+.++.+.+.++..... ..........++.+++++|...... ...
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~ 278 (460)
T d1z7xw1 199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278 (460)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence 45566666664432 2233445667899999998764322 2223456789999999998533211 111
Q ss_pred CCCCCCceEEEccCCcccccchhhhHh-hh-cccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccc-
Q 007138 433 GLPCAKLRRLDISDCKRLEGGFHRYMI-AL-HNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS- 509 (616)
Q Consensus 433 ~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~- 509 (616)
....+.++.++++++ .+++.....+. .+ .....|+.++++++.....+.......+...++|++|++++| .+..
T Consensus 279 l~~~~~l~~l~l~~n-~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N--~i~~~ 355 (460)
T d1z7xw1 279 LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--RLEDA 355 (460)
T ss_dssp HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS--BCHHH
T ss_pred ccccccccccccccc-cccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeee--cccCc
Confidence 122348999999984 55543222222 11 344589999999876332222222223455678999999996 3321
Q ss_pred ----ccccccccCCCCCCCCccceEecccCccccc-----cccccccCccccEEEecCCCCCcc-----cCC--CCCcCC
Q 007138 510 ----FPLEDKRLGTALPLPASLTTLWISRFPNLER-----LSSSIVDLQNLTELVLVNCPKLKY-----FPE--KGLPSS 573 (616)
Q Consensus 510 ----l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----i~~~~~~~~~L~~L~l~~c~~l~~-----l~~--~~~~~~ 573 (616)
+.... ....+.|++|++++|. ++. +...+..+++|++|++++ +.+++ +.. ......
T Consensus 356 g~~~l~~~l------~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~ 427 (460)
T d1z7xw1 356 GVRELCQGL------GQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQPGCL 427 (460)
T ss_dssp HHHHHHHHH------TSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCC
T ss_pred ccchhhhhh------hcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCC-CcCCHHHHHHHHHHHHhCCCc
Confidence 22211 0135679999999974 654 344567789999999999 57765 111 112346
Q ss_pred cceEEEcCCc
Q 007138 574 LLQLQIYCCP 583 (616)
Q Consensus 574 L~~L~i~~c~ 583 (616)
|+.|++.++.
T Consensus 428 L~~l~l~~~~ 437 (460)
T d1z7xw1 428 LEQLVLYDIY 437 (460)
T ss_dssp CCEEECTTCC
T ss_pred cCEEECCCCC
Confidence 9999999875
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.91 E-value=2.9e-09 Score=94.72 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=36.6
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
.+..+++|++|++++| .++.++... |..+++|++|++++ +.++.++. .+..+++|+++++++
T Consensus 73 ~~~~~~~L~~L~Ls~N--~l~~l~~~~------F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~ 135 (192)
T d1w8aa_ 73 AFEGASHIQELQLGEN--KIKEISNKM------FLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp TTTTCTTCCEEECCSC--CCCEECSSS------STTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred ccccccccceeeeccc--cccccCHHH------HhCCCcccccccCC-ccccccCHHHhcCCcccccccccc
Confidence 4455666666666665 555554432 33566666666666 45666654 455666666666666
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=3.2e-09 Score=86.58 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=47.4
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++|++|++++|.. +.+|..++.+++|+.|++++| .++.++.+..+++|+++++++|. +.+++.......+++|+.++
T Consensus 20 ~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~L~~L~ 96 (124)
T d1dcea3 20 LLVTHLDLSHNRL-RALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLN 96 (124)
T ss_dssp TTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcc-Ccchhhhhhhhcccccccccc-cccccCccccccccCeEECCCCc-cCCCCCchhhcCCCCCCEEE
Confidence 6666777766654 566666666667777777665 45666655566666666666665 44443221113345566666
Q ss_pred eccC
Q 007138 282 IHGC 285 (616)
Q Consensus 282 l~~~ 285 (616)
++++
T Consensus 97 l~~N 100 (124)
T d1dcea3 97 LQGN 100 (124)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5553
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=3.4e-09 Score=91.06 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=33.3
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
.++.++++|++++|. ++.++.....+++|+.|++++| .+..++ ....+++|++|++++| .++.
T Consensus 15 ~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N-~i~~ 77 (162)
T d1a9na_ 15 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNN-RICR 77 (162)
T ss_dssp ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSS-CCCE
T ss_pred cCcCcCcEEECCCCC-CCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccc-cccC
Confidence 344466666666654 4445444455666666666665 344443 2233446666666663 3443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=8.7e-09 Score=88.41 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=10.0
Q ss_pred cCCCCccEEEeCCCccee
Q 007138 90 ASLPALCKFEIGGCKKVV 107 (616)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~ 107 (616)
..+++|+.|++++|....
T Consensus 38 ~~l~~L~~L~Ls~N~i~~ 55 (162)
T d1a9na_ 38 ATLDQFDAIDFSDNEIRK 55 (162)
T ss_dssp GGTTCCSEEECCSSCCCE
T ss_pred cccccCCEEECCCCCCCc
Confidence 345556666666665444
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=1.6e-08 Score=82.36 Aligned_cols=10 Identities=10% Similarity=0.115 Sum_probs=3.6
Q ss_pred CCCCcEEEec
Q 007138 412 LRQLQGIKIW 421 (616)
Q Consensus 412 l~~L~~L~l~ 421 (616)
+++|++|+++
T Consensus 19 l~~L~~L~ls 28 (124)
T d1dcea3 19 LLLVTHLDLS 28 (124)
T ss_dssp GTTCCEEECC
T ss_pred CCCCCEEECC
Confidence 3333333333
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.74 E-value=2.5e-08 Score=88.47 Aligned_cols=66 Identities=8% Similarity=0.017 Sum_probs=34.0
Q ss_pred CCccEEEcccccccccc-cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchh
Q 007138 389 TSLETISIERCGNLKIL-PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 455 (616)
+++++|++++|.....+ +..+..+++|++|++++|......+......++|++|++++ ++++++.+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~ 95 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISN 95 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECS
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc-ccccccCH
Confidence 36666666665543323 22345666666666666533222222333345666666666 45555433
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.47 E-value=1e-07 Score=93.05 Aligned_cols=257 Identities=14% Similarity=0.109 Sum_probs=125.0
Q ss_pred hhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCc----------ccccccCCCCCccEE
Q 007138 162 NELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLV----------KLPQSSLSLSSLREI 231 (616)
Q Consensus 162 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~L 231 (616)
...+.....|+.|+++++. +..-....+...+... ++|+.++++++.... .+...+..+++|++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~----~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L 98 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 98 (344)
T ss_dssp SHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhC----CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccc
Confidence 3446777888888888753 3322111111222222 778888887664311 122235567788888
Q ss_pred EEcCCCCCCCCC------CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEE
Q 007138 232 EICKCSSLVSFP------EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSI 305 (616)
Q Consensus 232 ~l~~~~~l~~~~------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 305 (616)
++++|. ++... .+...++|++|++++|. +........+. .+..+... ......+.|+.+.+
T Consensus 99 ~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~---~l~~~~~~--------~~~~~~~~L~~l~l 165 (344)
T d2ca6a1 99 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIAR---ALQELAVN--------KKAKNAPPLRSIIC 165 (344)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHH---HHHHHHHH--------HHHHTCCCCCEEEC
T ss_pred cccccc-cccccccchhhhhcccccchheeccccc-ccccccccccc---cccccccc--------cccccCcccceeec
Confidence 888773 33321 11235677777777765 22111000000 00000000 00012234555555
Q ss_pred ecCCCCCccc---ccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch---
Q 007138 306 SDCDNIRTLT---VEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE--- 379 (616)
Q Consensus 306 ~~~~~l~~l~---~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~--- 379 (616)
+++ .++.-. +...+. .++.|++|+++++. +.+......+...+... ++|+.|++++|....
T Consensus 166 ~~n-~i~~~~~~~l~~~l~-----~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~------~~L~~L~Ls~N~i~~~g~ 232 (344)
T d2ca6a1 166 GRN-RLENGSMKEWAKTFQ-----SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYC------QELKVLDLQDNTFTHLGS 232 (344)
T ss_dssp CSS-CCTGGGHHHHHHHHH-----HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGC------TTCCEEECCSSCCHHHHH
T ss_pred ccc-cccccccccccchhh-----hhhhhccccccccc-ccccccccchhhhhcch------hhhccccccccccccccc
Confidence 443 222110 011111 14567777776642 32200000011112222 678888888876433
Q ss_pred -hhhhhccCCCCccEEEccccccccc----cccccc--CCCCCcEEEeccCCCCcc-----cCCCCC-CCCCceEEEccC
Q 007138 380 -SIAERLDNNTSLETISIERCGNLKI----LPSGLH--NLRQLQGIKIWNCGNLVS-----FPEGGL-PCAKLRRLDISD 446 (616)
Q Consensus 380 -~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~l~--~l~~L~~L~l~~~~~~~~-----~~~~~~-~~~~L~~L~l~~ 446 (616)
.+...+..+++|+.|++++|..-.. +-..+. ..+.|++|++++|. +.. +..... .++.|++|++++
T Consensus 233 ~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~ 311 (344)
T d2ca6a1 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG 311 (344)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCC
Confidence 2445567788889999988864322 222232 34678899998874 331 111111 234789999988
Q ss_pred Ccccc
Q 007138 447 CKRLE 451 (616)
Q Consensus 447 c~~l~ 451 (616)
+.+.
T Consensus 312 -N~~~ 315 (344)
T d2ca6a1 312 -NRFS 315 (344)
T ss_dssp -SBSC
T ss_pred -CcCC
Confidence 4553
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.45 E-value=2.2e-09 Score=95.67 Aligned_cols=87 Identities=26% Similarity=0.329 Sum_probs=55.2
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
++..+++|+.|++++| .++.++.... .+++|++|++++ +.++.++ .+..+++|++|++++ +++.+++.
T Consensus 65 ~l~~l~~L~~L~Ls~N--~i~~i~~~~~-------~~~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~L~~-N~i~~~~~ 132 (198)
T d1m9la_ 65 SLSGMENLRILSLGRN--LIKKIENLDA-------VADTLEELWISY-NQIASLS-GIEKLVNLRVLYMSN-NKITNWGE 132 (198)
T ss_dssp CHHHHTTCCEEECCEE--EECSCSSHHH-------HHHHCCEEECSE-EECCCHH-HHHHHHHSSEEEESE-EECCCHHH
T ss_pred cccCCccccChhhccc--cccccccccc-------cccccccccccc-ccccccc-ccccccccccccccc-chhccccc
Confidence 3556677777777775 5566554331 345677777777 3566665 466677777777777 56665543
Q ss_pred ---CCCcCCcceEEEcCCchhh
Q 007138 568 ---KGLPSSLLQLQIYCCPLIA 586 (616)
Q Consensus 568 ---~~~~~~L~~L~i~~c~~l~ 586 (616)
...+++|++|+++++|...
T Consensus 133 ~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 133 IDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHTTTTTCSEEEECSSHHHH
T ss_pred cccccCCCccceeecCCCcccc
Confidence 2346777777777776443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.44 E-value=3.1e-08 Score=96.91 Aligned_cols=211 Identities=17% Similarity=0.105 Sum_probs=98.6
Q ss_pred CcccEEEecCCCCc----------hhhhhhccCCCCccEEEccccccccc----ccccccCCCCCcEEEeccCCCCccc-
Q 007138 365 PSLKSLYVYGCSKL----------ESIAERLDNNTSLETISIERCGNLKI----LPSGLHNLRQLQGIKIWNCGNLVSF- 429 (616)
Q Consensus 365 ~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~~- 429 (616)
++|+.+.++++... ..+...+..+++|+.|++++|..... +...+...++|++|++++|. +...
T Consensus 59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~ 137 (344)
T d2ca6a1 59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQA 137 (344)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHH
T ss_pred CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc-ccccc
Confidence 66777777655321 11223345566777777776643221 23334456677777777663 2210
Q ss_pred --------CC-----CCCCCCCceEEEccCCcccccch-hhhHhhhcccccceeeecCCChHHHHHhh-hcCccccccCC
Q 007138 430 --------PE-----GGLPCAKLRRLDISDCKRLEGGF-HRYMIALHNLTNLHSLYIGGNMEIWKSMI-ERGRGFHRFSS 494 (616)
Q Consensus 430 --------~~-----~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~ 494 (616)
.. .....+.|+.+++++ +.++... ......+..+++|+.++++.|.....+.. .....+..+++
T Consensus 138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~ 216 (344)
T d2ca6a1 138 GAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 216 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred cccccccccccccccccccCcccceeeccc-ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhh
Confidence 00 001123566777666 3343321 22222445566677777766653322211 12234556666
Q ss_pred ccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccc-----ccccc--cCccccEEEecCCCCCcc---
Q 007138 495 LRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL-----SSSIV--DLQNLTELVLVNCPKLKY--- 564 (616)
Q Consensus 495 L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-----~~~~~--~~~~L~~L~l~~c~~l~~--- 564 (616)
|++|++++|. +... ....+...+...++|++|++++|. ++.. ...+. ..+.|++|++++ +.+..
T Consensus 217 L~~L~Ls~N~--i~~~--g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~-N~i~~~~~ 290 (344)
T d2ca6a1 217 LKVLDLQDNT--FTHL--GSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQY-NEIELDAV 290 (344)
T ss_dssp CCEEECCSSC--CHHH--HHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCS-SCCBHHHH
T ss_pred hccccccccc--cccc--ccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCC-CcCChHHH
Confidence 7777776652 1110 000011111245667777776653 3321 11222 235566777766 34433
Q ss_pred --cCCC--CCcCCcceEEEcCCc
Q 007138 565 --FPEK--GLPSSLLQLQIYCCP 583 (616)
Q Consensus 565 --l~~~--~~~~~L~~L~i~~c~ 583 (616)
+... ...+.|+.|+++++.
T Consensus 291 ~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 291 RTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHccCCCCCEEECCCCc
Confidence 1110 013456666666543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.43 E-value=4.1e-09 Score=93.94 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=40.0
Q ss_pred chhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 378 LESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
++.++..+..+++|+.|++++|. ++.++ ++..+++|+.|++++| .+..++.....+++|++|++++ +.++.
T Consensus 37 i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~-N~i~~ 107 (198)
T d1m9la_ 37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY-NQIAS 107 (198)
T ss_dssp CCCCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSE-EECCC
T ss_pred hhhhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhccc-cccccccccccccccccccccc-ccccc
Confidence 34445556666677777777654 44553 4666777777777766 3444443222223566666666 34543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-06 Score=74.02 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=10.5
Q ss_pred ccccccCCCCCcEEEeccCCCCccc
Q 007138 405 LPSGLHNLRQLQGIKIWNCGNLVSF 429 (616)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~~~ 429 (616)
+|..+..+++|++|++.+++.++.+
T Consensus 23 ~p~~l~~l~~l~~L~l~~n~~l~~i 47 (156)
T d2ifga3 23 SLHHLPGAENLTELYIENQQHLQHL 47 (156)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEE
T ss_pred CcccccCccccCeeecCCCcccccc
Confidence 3334444444444444443333333
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.3e-06 Score=72.36 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=48.5
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
+..+++|++|++.++ ..++.++... +..+++|+.|++++ ++++.++. .+..+++|++|++++ ++++.++.
T Consensus 27 l~~l~~l~~L~l~~n-~~l~~i~~~~------f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~ 97 (156)
T d2ifga3 27 LPGAENLTELYIENQ-QHLQHLELRD------LRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF-NALESLSW 97 (156)
T ss_dssp SCSCSCCSEEECCSC-SSCCEECGGG------SCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS-SCCSCCCS
T ss_pred ccCccccCeeecCCC-ccccccCchh------hccccccCcceeec-cccCCcccccccccccccceeccC-CCCcccCh
Confidence 344555666666542 2355554432 23456666666666 35666643 456666666666666 66666666
Q ss_pred CCC-cCCcceEEEcCCc
Q 007138 568 KGL-PSSLLQLQIYCCP 583 (616)
Q Consensus 568 ~~~-~~~L~~L~i~~c~ 583 (616)
..+ ...|+.|+++++|
T Consensus 98 ~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 98 KTVQGLSLQELVLSGNP 114 (156)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred hhhccccccccccCCCc
Confidence 433 3456667666654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.43 E-value=0.00082 Score=56.72 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=19.0
Q ss_pred cCCCCccEEEccccccccc-----ccccccCCCCCcEEEeccC
Q 007138 386 DNNTSLETISIERCGNLKI-----LPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~-----~~~~l~~l~~L~~L~l~~~ 423 (616)
.+.++|++|+++++..++. +-..+...++|++|++++|
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n 54 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 54 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence 3445677777765433322 1223344455555555554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.41 E-value=0.0023 Score=53.85 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=6.2
Q ss_pred cCCCCccEEEeCCC
Q 007138 90 ASLPALCKFEIGGC 103 (616)
Q Consensus 90 ~~~~~L~~L~l~~~ 103 (616)
...+.|++|++++|
T Consensus 41 ~~n~~L~~L~Ls~n 54 (167)
T d1pgva_ 41 CNSKHIEKFSLANT 54 (167)
T ss_dssp TTCSCCCEEECTTS
T ss_pred hhCCccceeecccc
Confidence 33444444444444
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.00057 Score=57.42 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=7.4
Q ss_pred hcCCCccEEeeccC
Q 007138 166 QDICSLKRLTITSC 179 (616)
Q Consensus 166 ~~l~~L~~L~l~~~ 179 (616)
..+++|++|+++++
T Consensus 62 ~~~~~L~~L~Ls~N 75 (162)
T d1koha1 62 ENIPELLSLNLSNN 75 (162)
T ss_dssp HHCTTCCCCCCCSS
T ss_pred HhCCCCCEeeCCCc
Confidence 44555555555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.00081 Score=56.43 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=44.0
Q ss_pred ccCCCcEEEccCCCCCccc---ccccCCCCCccEEEEcCCCCCCCCCCCC--CCCCCcEEEccCCCC
Q 007138 200 LSCRLEYLRLSNCEGLVKL---PQSSLSLSSLREIEICKCSSLVSFPEVA--LPSKLKNIWISTCDA 261 (616)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~ 261 (616)
.+++|++|++++|.. +.+ +..+..+++|+.|++++| .+++++.+. ...+|+.+++.+|+.
T Consensus 63 ~~~~L~~L~Ls~N~i-~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 63 NIPELLSLNLSNNRL-YRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp HCTTCCCCCCCSSCC-CCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred hCCCCCEeeCCCccc-cCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCc
Confidence 348899999999876 433 444667899999999998 577776432 245688888888874
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.66 E-value=0.0095 Score=49.76 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=8.3
Q ss_pred hcCCCCccEEEeCCCc
Q 007138 89 VASLPALCKFEIGGCK 104 (616)
Q Consensus 89 ~~~~~~L~~L~l~~~~ 104 (616)
+...++|++|++++|.
T Consensus 42 l~~n~~L~~L~Ls~n~ 57 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTR 57 (166)
T ss_dssp HTTCCSCCEEECTTSC
T ss_pred HhcCCccCeeeccCCc
Confidence 3445555555555554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=95.42 E-value=0.0031 Score=52.95 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=6.8
Q ss_pred cCCCCccEEEcccc
Q 007138 386 DNNTSLETISIERC 399 (616)
Q Consensus 386 ~~~~~L~~L~l~~~ 399 (616)
...++|++|++++|
T Consensus 43 ~~n~~L~~L~Ls~n 56 (166)
T d1io0a_ 43 KTNTYVKKFSIVGT 56 (166)
T ss_dssp TTCCSCCEEECTTS
T ss_pred hcCCccCeeeccCC
Confidence 34445555555544
|