Citrus Sinensis ID: 007148

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------
MKFMKLGSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEEFPKNVKLIKKNNKSSKSGLQLLPSRSRRIFDKLWIVGKGHGENRSSETSGSSQSPTSLAPGDTKSSGSSSRHRRHSIS
ccccccccccccccccccEEEEEcccccccEEEEEccEEEEEccHHHccccHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEEcccccccHEcccccEEEEEccccccEEEEEccEEEEEccccccccHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHcccccccccccEccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHcHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHcHHHHHcccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
mkfmklgskpdtfqtdgkciRYVTSELATDVIINVGEVkfylhkfpllsksnrLHRLVLKAseensdemnivdfpggpkAFEICAKFcygmtvtfSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTksllpwsedlKIIGRSVdsiasktsvdpanvtwsytynrklsapdriveegvfgeriesvpkdwwvedICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCllptdksvgcscSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVkdlliparssqtacyDVELVQCIVNEylmhekpsralgdvgwnekgpddfvlghGSLLAVGKLINGYLaeiahdpnltlaSFIDlsqsipesarpiHDGLYKAIDSYlkehpdltKAERKKICGLMDVRKLTMDASVhaaqndrlplRVVVQVLFFEQVRAASEVHAlrnnpqnashsttntdeeWEKTAAKDDRKSLKKQISQMkikdeefpkNVKLIkknnkssksglqllpsrsrriFDKLWIvgkghgenrssetsgssqsptslapgdtkssgsssrhrrhsis
mkfmklgskpdtfqtdgkcIRYVTSELATDVIINVGEVKFYLHkfpllsksnrLHRLVLKaseensdemniVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTtksllpwseDLKIIGRsvdsiasktsvdpanvtwsytynrklsapdriveegvfgeriesvpkdwwveDICELDIDLYKRVMIAVkskgrmdgsviGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKlheasvkdlliparssqtaCYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVhaaqndrlplRVVVQVLFFEQVRAASEvhalrnnpqnashsttntdeewektaakddrksLKKQisqmkikdeefpknvklikknnkssksglqllpsrsrriFDKLWIVGKghgenrssetsgssqsptslapgdtkssgsssrhrrhsis
MKFMKLGSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVgcscsfllkllkvsvlvgvDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEEFPknvklikknnkssksGLQLLPSRSRRIFDKLWIVGKGHGENRssetsgssqsptsLAPGDTKssgsssrhrrhsis
*************QTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLK********MNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAAS***************************************************************************RIFDKLWIVG*****************************************
*KF***GSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRL************NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDP***********************************WWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDS*************KCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEY*******************************AVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHP*****ERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFE*******************************************************************************************************************************RH***
********KPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRN********************************SQMKIKDEEFPKNVKLIKKNNKSSKSGLQLLPSRSRRIFDKLWIVGKG***************************************
******GSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYT**********************SVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDA**SDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEK*********************HGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVH********************************KKQISQMKIKD*****N**************************************************************************
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MKFMKLGSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWExxxxxxxxxxxxxxxxxxxxxDEEFPKNVKLIKKNNKSSKSGLQLLPSRSRRIFDKLWIVGKGHGENRSSETSGSSQSPTSLAPGDTKSSGSSSRHRRHSIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query616 2.2.26 [Sep-21-2011]
Q8H1D3571 BTB/POZ domain-containing yes no 0.870 0.938 0.593 0.0
O80970634 BTB/POZ domain-containing no no 0.868 0.843 0.487 1e-149
Q9FN09579 BTB/POZ domain-containing no no 0.900 0.958 0.457 1e-138
Q0WL52580 BTB/POZ domain-containing no no 0.853 0.906 0.460 1e-138
O64814481 BTB/POZ domain-containing no no 0.722 0.925 0.485 1e-127
Q9C9V6631 BTB/POZ domain-containing no no 0.920 0.898 0.399 1e-123
Q9LIM6588 BTB/POZ domain-containing no no 0.788 0.826 0.429 1e-110
Q9FIK1559 BTB/POZ domain-containing no no 0.75 0.826 0.380 2e-99
Q9LYW0592 BTB/POZ domain-containing no no 0.787 0.819 0.396 2e-97
Q5KS50762 Coleoptile phototropism p no no 0.860 0.695 0.342 4e-95
>sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1 Back     alignment and function desciption
 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/588 (59%), Positives = 441/588 (75%), Gaps = 52/588 (8%)

Query: 1   MKFMKLGSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLK 60
           MKFMKLGSKPDTF++DGK ++Y  S+L +DV I+VGEV F+LHKFPLLSKSNR+ RLV +
Sbjct: 1   MKFMKLGSKPDTFESDGKFVKYAVSDLDSDVTIHVGEVTFHLHKFPLLSKSNRMQRLVFE 60

Query: 61  ASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKN 120
           ASEE +DE+ I+D PGG KAFEICAKFCYGMTVT +AYN+ A RCAAEYLEMTED D+ N
Sbjct: 61  ASEEKTDEITILDMPGGYKAFEICAKFCYGMTVTLNAYNITAVRCAAEYLEMTEDADRGN 120

Query: 121 LIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTW 180
           LI+K+EVFLNS IFRSWKDSIIVLQTT+SLLPWSEDLK++GR +DS+++K  V+P  +TW
Sbjct: 121 LIYKIEVFLNSGIFRSWKDSIIVLQTTRSLLPWSEDLKLVGRCIDSVSAKILVNPETITW 180

Query: 181 SYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGS 240
           SYT+NRKLS PD+IVE          +PKDWWVED+CEL+ID++KRV+  VKS GRM+  
Sbjct: 181 SYTFNRKLSGPDKIVEYHREKREENVIPKDWWVEDVCELEIDMFKRVISVVKSSGRMNNG 240

Query: 241 VIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLP-TDKSVG-CSCSFLLKLL 298
           VI EALR Y  RWLP+S+++L S+A +  NK LVET+V LLP  ++++   SCSFLLKLL
Sbjct: 241 VIAEALRYYVARWLPESMESLTSEASS--NKDLVETVVFLLPKVNRAMSYSSCSFLLKLL 298

Query: 299 KVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHE 358
           KVS+LVG D + REDLV+ +SLKLHEASVKDLLI         ++VELV  IV++++  E
Sbjct: 299 KVSILVGADETVREDLVENVSLKLHEASVKDLLI---------HEVELVHRIVDQFMADE 349

Query: 359 KPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPE 418
           K  R   D  + E     FVLG+G LL+VG+LI+ YL   A +  LTL+SF++LS+ +PE
Sbjct: 350 K--RVSEDDRYKE-----FVLGNGILLSVGRLIDAYL---ALNSELTLSSFVELSELVPE 399

Query: 419 SARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVV 478
           SARPIHDGLYKAID+++KEHP+LTK+E+K++CGLMDVRKLT +AS HAAQN+RLPLRVVV
Sbjct: 400 SARPIHDGLYKAIDTFMKEHPELTKSEKKRLCGLMDVRKLTNEASTHAAQNERLPLRVVV 459

Query: 479 QVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEE 538
           QVL+FEQ+RA    H+   +   +SHS     EE                      K EE
Sbjct: 460 QVLYFEQLRAN---HSPVASVAASSHSPVEKTEE---------------------NKGEE 495

Query: 539 FPKNVKLIKKN--NKSSKS--GLQLLPSRSRRIFDKLWIVGKGHGENR 582
             K V+L KK+  +KS++S  G QL+PSRSRRIF+K+W  GKG   N+
Sbjct: 496 ATKKVELSKKSRGSKSTRSGGGAQLMPSRSRRIFEKIW-PGKGEISNK 542
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Coregulates with PID the auxin-mediated plant organogenesis. Regulates cotyledon development through control of PIN1 polarity. May play an essential role in root gravitropic responses.
Arabidopsis thaliana (taxid: 3702)
>sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1 Back     alignment and function description
>sp|Q0WL52|NPY5_ARATH BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2 Back     alignment and function description
>sp|O64814|NPY4_ARATH BTB/POZ domain-containing protein NPY4 OS=Arabidopsis thaliana GN=NPY4 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1 Back     alignment and function description
>sp|Q9LIM6|Y3649_ARATH BTB/POZ domain-containing protein At3g26490 OS=Arabidopsis thaliana GN=At3g26490 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800 OS=Arabidopsis thaliana GN=At5g47800 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1 Back     alignment and function description
>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query616
255548736617 protein binding protein, putative [Ricin 0.972 0.970 0.793 0.0
359475882620 PREDICTED: BTB/POZ domain-containing pro 0.977 0.970 0.778 0.0
224143314594 predicted protein [Populus trichocarpa] 0.956 0.991 0.776 0.0
225430484624 PREDICTED: BTB/POZ domain-containing pro 0.977 0.964 0.773 0.0
296082137597 unnamed protein product [Vitis vinifera] 0.944 0.974 0.767 0.0
356564003616 PREDICTED: BTB/POZ domain-containing pro 0.998 0.998 0.734 0.0
147852215 734 hypothetical protein VITISV_036489 [Viti 0.941 0.790 0.775 0.0
356552414615 PREDICTED: BTB/POZ domain-containing pro 0.996 0.998 0.732 0.0
449441862612 PREDICTED: BTB/POZ domain-containing pro 0.991 0.998 0.709 0.0
357437167617 BTB/POZ domain-containing protein [Medic 0.998 0.996 0.724 0.0
>gi|255548736|ref|XP_002515424.1| protein binding protein, putative [Ricinus communis] gi|223545368|gb|EEF46873.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/606 (79%), Positives = 545/606 (89%), Gaps = 7/606 (1%)

Query: 1   MKFMKLGSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLK 60
           MKFMKLGSKPD FQ +GK IRYV+SELATDV INVGEVKFYLHKFPLLSK NRLH+LV K
Sbjct: 1   MKFMKLGSKPDVFQAEGKSIRYVSSELATDVTINVGEVKFYLHKFPLLSKCNRLHKLVSK 60

Query: 61  ASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKN 120
           ASEEN DE+N+VDFPGGPKAFEICAKFCYGMTVT +AY+VVAARCAAEYLEMTEDVDK N
Sbjct: 61  ASEENPDEINMVDFPGGPKAFEICAKFCYGMTVTLNAYSVVAARCAAEYLEMTEDVDKGN 120

Query: 121 LIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTW 180
           LIFK+EVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKI+GR +DSIASKTSVDPAN+TW
Sbjct: 121 LIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCIDSIASKTSVDPANITW 180

Query: 181 SYTYNRKLSAPDRIVEEGV-FGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDG 239
           SYTYNRKLS PD+IVE+G+ F E+IESVPKDWWVEDICELDI+LYKRV+IAV+SKGRMDG
Sbjct: 181 SYTYNRKLSVPDKIVEDGMKFHEKIESVPKDWWVEDICELDIELYKRVIIAVRSKGRMDG 240

Query: 240 SVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLK 299
           +VIGEAL+ YAVRWLPD+ D LVSD +T R K LVET+VCLLP+ K VGC C FLLKLLK
Sbjct: 241 AVIGEALKTYAVRWLPDTFDDLVSDGRTWRYKYLVETLVCLLPSGKGVGCPCGFLLKLLK 300

Query: 300 VSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHEK 359
           V++ VG D+S REDLVKRISLKLHEASVKDLLIPARS QT  YDVELVQC++N Y+ HEK
Sbjct: 301 VAIFVGADDSPREDLVKRISLKLHEASVKDLLIPARSPQTTLYDVELVQCLLNRYMTHEK 360

Query: 360 PSRALGDVGWNEKGPDDFVL--GHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIP 417
            S+ L  V  N++  DDFVL  GHG++L+VGKLI+GYL+EIA D +LTLA+FIDL+Q IP
Sbjct: 361 YSQDLT-VEKNDE-TDDFVLRHGHGNMLSVGKLIDGYLSEIACDTSLTLANFIDLAQLIP 418

Query: 418 ESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVV 477
           ESARP HDGLYKAID+YLKEHP+LTKAERKKI GLMDV+KLTMDAS+HAAQN+RLPLRVV
Sbjct: 419 ESARPTHDGLYKAIDAYLKEHPNLTKAERKKISGLMDVKKLTMDASMHAAQNERLPLRVV 478

Query: 478 VQVLFFEQVRAASEVHALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDE 537
           VQVLFFEQVRA++ V AL +NP+ AS+S TNTDEE EKTAA+D+ KS+KKQ+SQ+K+KDE
Sbjct: 479 VQVLFFEQVRASAGVQALHSNPRYASNSMTNTDEECEKTAAEDN-KSMKKQVSQLKVKDE 537

Query: 538 EFPKNVKLIKKNNKSSKSGLQLLPSRSRRIFDKLWIV-GKGHGENRSSETSGSSQSPTSL 596
           E  KN +L KKN+K+SKSG+QLLPSRSRRIFDKLW+V GKG+ ENRSSETSGSSQSPTS+
Sbjct: 538 ELHKNEQLTKKNSKNSKSGIQLLPSRSRRIFDKLWVVGGKGNVENRSSETSGSSQSPTSI 597

Query: 597 APGDTK 602
            PGDTK
Sbjct: 598 VPGDTK 603

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475882|ref|XP_002285522.2| PREDICTED: BTB/POZ domain-containing protein NPY1-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224143314|ref|XP_002324913.1| predicted protein [Populus trichocarpa] gi|222866347|gb|EEF03478.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430484|ref|XP_002285523.1| PREDICTED: BTB/POZ domain-containing protein NPY1-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082137|emb|CBI21142.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356564003|ref|XP_003550246.1| PREDICTED: BTB/POZ domain-containing protein NPY1-like [Glycine max] Back     alignment and taxonomy information
>gi|147852215|emb|CAN82247.1| hypothetical protein VITISV_036489 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552414|ref|XP_003544563.1| PREDICTED: BTB/POZ domain-containing protein NPY1-like [Glycine max] Back     alignment and taxonomy information
>gi|449441862|ref|XP_004138701.1| PREDICTED: BTB/POZ domain-containing protein NPY1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357437167|ref|XP_003588859.1| BTB/POZ domain-containing protein [Medicago truncatula] gi|355477907|gb|AES59110.1| BTB/POZ domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query616
TAIR|locus:2116752571 ENP "ENHANCER OF PINOID" [Arab 0.613 0.661 0.590 3.1e-171
TAIR|locus:2046961634 NPY2 "NAKED PINS IN YUC MUTANT 0.925 0.899 0.455 8.4e-129
TAIR|locus:2158182579 NPY3 "NAKED PINS IN YUC MUTANT 0.810 0.861 0.483 5e-125
TAIR|locus:2120125580 NPY5 "NAKED PINS IN YUC MUTANT 0.633 0.672 0.454 5.9e-120
TAIR|locus:2045314481 NPY4 "NAKED PINS IN YUC MUTANT 0.514 0.659 0.504 2.1e-113
TAIR|locus:2200286631 AT1G67900 [Arabidopsis thalian 0.566 0.553 0.44 4.3e-111
TAIR|locus:2079296588 AT3G26490 [Arabidopsis thalian 0.568 0.595 0.416 1.4e-97
TAIR|locus:2173418746 NPH3 "NON-PHOTOTROPIC HYPOCOTY 0.405 0.335 0.389 5.4e-91
TAIR|locus:2160877559 AT5G47800 [Arabidopsis thalian 0.795 0.876 0.369 2e-88
TAIR|locus:2143558592 AT5G03250 [Arabidopsis thalian 0.787 0.819 0.389 1.8e-85
TAIR|locus:2116752 ENP "ENHANCER OF PINOID" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1172 (417.6 bits), Expect = 3.1e-171, Sum P(3) = 3.1e-171
 Identities = 235/398 (59%), Positives = 296/398 (74%)

Query:     1 MKFMKLGSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLK 60
             MKFMKLGSKPDTF++DGK ++Y  S+L +DV I+VGEV F+LHKFPLLSKSNR+ RLV +
Sbjct:     1 MKFMKLGSKPDTFESDGKFVKYAVSDLDSDVTIHVGEVTFHLHKFPLLSKSNRMQRLVFE 60

Query:    61 ASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKN 120
             ASEE +DE+ I+D PGG KAFEICAKFCYGMTVT +AYN+ A RCAAEYLEMTED D+ N
Sbjct:    61 ASEEKTDEITILDMPGGYKAFEICAKFCYGMTVTLNAYNITAVRCAAEYLEMTEDADRGN 120

Query:   121 LIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTW 180
             LI+K+EVFLNS IFRSWKDSIIVLQTT+SLLPWSEDLK++GR +DS+++K  V+P  +TW
Sbjct:   121 LIYKIEVFLNSGIFRSWKDSIIVLQTTRSLLPWSEDLKLVGRCIDSVSAKILVNPETITW 180

Query:   181 SYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGS 240
             SYT+NRKLS PD+IVE          +PKDWWVED+CEL+ID++KRV+  VKS GRM+  
Sbjct:   181 SYTFNRKLSGPDKIVEYHREKREENVIPKDWWVEDVCELEIDMFKRVISVVKSSGRMNNG 240

Query:   241 VIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLP-TDKSVXXXX-XXXXXXX 298
             VI EALR Y  RWLP+S+++L S+A +  NK LVET+V LLP  ++++            
Sbjct:   241 VIAEALRYYVARWLPESMESLTSEASS--NKDLVETVVFLLPKVNRAMSYSSCSFLLKLL 298

Query:   299 XXXXXXXXDNSAREDLVKRISLKLHEASVKDLLIPARSSQTACYDVELVQCIVNEYLMHE 358
                     D + REDLV+ +SLKLHEASVKDLLI         ++VELV  IV++++  E
Sbjct:   299 KVSILVGADETVREDLVENVSLKLHEASVKDLLI---------HEVELVHRIVDQFMADE 349

Query:   359 KPSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLA 396
             K  R   D  + E     FVLG+G LL+VG+LI+ YLA
Sbjct:   350 K--RVSEDDRYKE-----FVLGNGILLSVGRLIDAYLA 380
GO:0004871 "signal transducer activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0009416 "response to light stimulus" evidence=IEA;ISS
GO:0045176 "apical protein localization" evidence=IGI
GO:0048825 "cotyledon development" evidence=IGI
GO:0005770 "late endosome" evidence=IDA
GO:0010540 "basipetal auxin transport" evidence=IGI
GO:0009911 "positive regulation of flower development" evidence=IGI
GO:0010229 "inflorescence development" evidence=IGI
GO:0048827 "phyllome development" evidence=IGI
GO:0009908 "flower development" evidence=IGI
TAIR|locus:2046961 NPY2 "NAKED PINS IN YUC MUTANTS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158182 NPY3 "NAKED PINS IN YUC MUTANTS 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120125 NPY5 "NAKED PINS IN YUC MUTANTS 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045314 NPY4 "NAKED PINS IN YUC MUTANTS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079296 AT3G26490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160877 AT5G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H1D3NPY1_ARATHNo assigned EC number0.59350.87010.9387yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query616
pfam03000249 pfam03000, NPH3, NPH3 family 1e-108
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-06
pfam00651101 pfam00651, BTB, BTB/POZ domain 0.003
>gnl|CDD|217312 pfam03000, NPH3, NPH3 family Back     alignment and domain information 
 Score =  325 bits (836), Expect = e-108
 Identities = 120/257 (46%), Positives = 174/257 (67%), Gaps = 10/257 (3%)

Query: 209 KDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSD-AQT 267
           +DWW ED+ EL IDL+KRV+ A+KS+G +   VIGEAL  YA +WLP    +  S+    
Sbjct: 1   RDWWFEDLSELSIDLFKRVITAMKSRG-VKPEVIGEALMHYAKKWLPGLSRSGSSEEDSE 59

Query: 268 LRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASV 327
              + L+ETIV LLP++K    SCSFL KLL+ ++++G   S RE+L +RI L+L +A++
Sbjct: 60  EEQRALLETIVSLLPSEKGS-VSCSFLFKLLRAAIILGASESCREELERRIGLQLDQATL 118

Query: 328 KDLLIPARSS-QTACYDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFVLGHGSLLA 386
            DLLIP+  S +   YDV+LVQ I+  +L  +  +++  D         +      SLL 
Sbjct: 119 DDLLIPSGYSGEETLYDVDLVQRILEVFLSRDAATQSSDDED------SEASPSSSSLLK 172

Query: 387 VGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAER 446
           V KL++GYLAEIA DPNL L+ FI L++++P+SARP HDGLY+AID YLK HP+L+++E+
Sbjct: 173 VAKLVDGYLAEIAPDPNLKLSKFIALAEAVPDSARPSHDGLYRAIDIYLKAHPNLSESEK 232

Query: 447 KKICGLMDVRKLTMDAS 463
           K++C LMD +KL+ +A 
Sbjct: 233 KRLCRLMDCQKLSQEAC 249

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 616
PF03000258 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr 100.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.95
PHA02713557 hypothetical protein; Provisional 99.93
PHA02790480 Kelch-like protein; Provisional 99.91
PHA03098534 kelch-like protein; Provisional 99.89
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.66
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.54
KOG4350620 consensus Uncharacterized conserved protein, conta 99.21
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.12
KOG4591280 consensus Uncharacterized conserved protein, conta 98.73
KOG4682488 consensus Uncharacterized conserved protein, conta 98.4
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.17
KOG07831267 consensus Uncharacterized conserved protein, conta 97.9
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 97.51
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 96.53
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 96.11
KOG2716230 consensus Polymerase delta-interacting protein PDI 95.01
KOG3473112 consensus RNA polymerase II transcription elongati 94.91
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 93.9
KOG2838401 consensus Uncharacterized conserved protein, conta 93.53
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 91.93
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 87.7
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=4.5e-87  Score=680.01  Aligned_cols=249  Identities=47%  Similarity=0.815  Sum_probs=224.2

Q ss_pred             CCchhhhcccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCcccc--------ccchhhhhhhHHHHHHHHHh
Q 007148          209 KDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDA--------LVSDAQTLRNKCLVETIVCL  280 (616)
Q Consensus       209 ~~WW~EDl~~L~id~~~rVI~amks~g~~~~e~I~~aL~~Ya~r~L~~~~~~--------~~~~~~~~~~r~LLEtIv~L  280 (616)
                      +|||||||+.|++|+|+|||.+|+++| +++++|+++|++||++|||+..+.        ........+||.+||+||+|
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~-~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l   79 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL   79 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence            489999999999999999999999998 599999999999999999998332        11223567999999999999


Q ss_pred             cCCCCCcccChHHHHHHHhhhhhccCCHHHHHHHHHHHhhcccccCcccccccc-CCCCCccccHHHHHHHHHHHHhccC
Q 007148          281 LPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPA-RSSQTACYDVELVQCIVNEYLMHEK  359 (616)
Q Consensus       281 LP~ek~s~vsc~FL~~LLR~A~~l~as~~cr~~LEkrIg~qLd~AtldDLLips-~~~~~~~yDvd~V~riv~~Fl~~~~  359 (616)
                      ||.|+++ +||+|||+|||+|++++++..||.+||+|||.|||||||+|||||+ ++..+|+||||+|+|||++||.+++
T Consensus        80 LP~e~~s-vsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~  158 (258)
T PF03000_consen   80 LPPEKGS-VSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEE  158 (258)
T ss_pred             CCCCCCc-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccc
Confidence            9999999 9999999999999999999999999999999999999999999999 3344699999999999999999875


Q ss_pred             CCCcCCCCCCCCCCCCCcccCcchHHHHHHHHHHHHhHhcCCCCCChhhHHHHHhhcCCCCcccchhHHHHHHHHHhhCC
Q 007148          360 PSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHP  439 (616)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~skF~~Lae~lP~~aR~~hDgLYrAIDiYLk~Hp  439 (616)
                      ..+..    ..........++..++.+||||||+||+|||+||||+|+||++|||++|++||++|||||||||||||+||
T Consensus       159 ~~~~~----~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp  234 (258)
T PF03000_consen  159 EAGEE----EESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP  234 (258)
T ss_pred             ccccc----cccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence            43211    11112233455789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHhhhccccCCCCCHHHh
Q 007148          440 DLTKAERKKICGLMDVRKLTMDAS  463 (616)
Q Consensus       440 ~lse~Er~~lC~~mdc~KLS~eAc  463 (616)
                      +||++||++||++|||||||+|||
T Consensus       235 ~ls~~Er~~lC~~ldc~KLS~EAC  258 (258)
T PF03000_consen  235 GLSEEERKRLCRLLDCQKLSPEAC  258 (258)
T ss_pred             cCCHHHHHHHHhhCCcccCCcccC
Confidence            999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query616
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-06
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 6e-06
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 8e-06
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 9e-06
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 1e-05
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-05
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 3e-05
3b84_A119 Zinc finger and BTB domain-containing protein 48; 5e-05
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 6e-05
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-04
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 2e-04
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 60.6 bits (146), Expect = 1e-09
 Identities = 73/524 (13%), Positives = 138/524 (26%), Gaps = 174/524 (33%)

Query: 112 MTEDVDKKNLIFK--LEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIAS 169
           M  +  +    +K  L VF ++  F    D   V    KS+L   E++  I      I S
Sbjct: 7   MDFETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILS-KEEIDHI------IMS 57

Query: 170 KTSVDPAN-VTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVM 228
           K +V     + W+      LS  + +V++  F E +  +   + +  I            
Sbjct: 58  KDAVSGTLRLFWTL-----LSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 229 IAVKSKGRMDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRN-------------K-CLV 274
           + ++ + R+      +    Y V         L      LR              K  + 
Sbjct: 111 MYIEQRDRLYNDN--QVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 275 ETIVCLLPTDKSVGCSCSFLLKLLKVS-VLVGVDNSAREDLVKRISLKLHEASVKDLLIP 333
              VCL      V C   F     K+  + +   NS    L   +  KL      +    
Sbjct: 168 LD-VCL---SYKVQCKMDF-----KIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWTSR 216

Query: 334 ARSSQTACYDVELVQCIVNEYLMHEKPSRAL---GDVGWNEKGPDDFVLGHGSLL----- 385
           +  S      +  +Q  +   L  +     L    +V  N K  + F L    LL     
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFK 275

Query: 386 ----AVGKLINGYLAEIAHDPNLT-------LASFIDLS-QSIPESARPIHDGLYKAIDS 433
                +      +++   H   LT       L  ++D   Q +P      +         
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--------- 326

Query: 434 YLKEHPDLTKAERKKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVH 493
                                                  P    + ++      A S   
Sbjct: 327 ---------------------------------------PR--RLSII------AES--- 336

Query: 494 ALRNNPQNASHSTTNTDEEWEKTAAKDDRKSLKKQISQMKIKDEE--------FPKNVK- 544
            +R+           T + W+          ++  ++ ++  +          FP +   
Sbjct: 337 -IRDGL--------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 545 ----------------------------LIKKNNKSSKSGLQLL 560
                                       L++K  K S   +  +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query616
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.94
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.94
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.83
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.83
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.82
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.82
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.82
2vpk_A116 Myoneurin; transcription regulation, transcription 99.82
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.81
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.81
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.81
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.8
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.8
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.8
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.8
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.8
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.79
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.78
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.76
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.72
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.31
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.13
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 98.99
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.82
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.26
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.21
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.16
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.53
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 97.35
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 95.84
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 95.39
3kvt_A115 Potassium channel protein SHAW; tetramerization do 94.54
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 92.13
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 91.51
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 89.94
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 89.81
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
Probab=99.94  E-value=1.1e-27  Score=240.84  Aligned_cols=227  Identities=11%  Similarity=0.068  Sum_probs=164.2

Q ss_pred             eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-c--cCCCCceeecCCCCCHHHHHHHHHHhcCceeEeec
Q 007148           21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-S--EENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSA   97 (616)
Q Consensus        21 ~~~~~~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~-~--e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~   97 (616)
                      .++.++.+|||+|.|||+.|++||.+|+++|+||++||+.. .  +....+|.|++++  +++|+.+++|+||+++.++.
T Consensus        24 ~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~  101 (256)
T 3hve_A           24 SFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNE  101 (256)
T ss_dssp             TCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccH
Confidence            47889999999999999999999999999999999999864 3  5566789999987  79999999999999999999


Q ss_pred             ccHHHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcchhhHHHHHHHhhccCCCC
Q 007148           98 YNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPAN  177 (616)
Q Consensus        98 ~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~Iv~rCidsLA~kA~~~~~~  177 (616)
                      .||..++.||.+|||++      |+..|+.||.+.+.         ..||..++.+|+.+++     +.|..++..    
T Consensus       102 ~~v~~ll~~A~~l~i~~------l~~~c~~~L~~~l~---------~~n~~~i~~~A~~~~~-----~~L~~~~~~----  157 (256)
T 3hve_A          102 DTIQDVVQAADLLLLTD------LKTLCCEFLEGCIA---------AENCIGIRDFALHYCL-----HHVHYLATE----  157 (256)
T ss_dssp             CCHHHHHHHHHHHTCHH------HHHHHHHHHHHTCC---------SSTTHHHHHHHHHTTC-----HHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHChHH------HHHHHHHHHHhhCC---------HhhHHHHHHHHHHcCc-----HHHHHHHHH----
Confidence            99999999999999995      88999999999984         5899999999999983     444444422    


Q ss_pred             ccccccccCCCCCCcccccccccccccccCCCCchhhhcccCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhhcC
Q 007148          178 VTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGR--MDGSVIGEALRIYAVRWLP  255 (616)
Q Consensus       178 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~id~~~rVI~amks~g~--~~~e~I~~aL~~Ya~r~L~  255 (616)
                          |.                  .+  ++...+-.+++..|+.+....++   ++..+  .+++.|.++++.|+++..+
T Consensus       158 ----~i------------------~~--~f~~v~~~~~f~~L~~~~l~~lL---~~d~L~v~~E~~v~~av~~W~~~~~~  210 (256)
T 3hve_A          158 ----YL------------------ET--HFRDVSSTEEFLELSPQKLKEVI---SLEKLNVGNERYVFEAVIRWIAHDTE  210 (256)
T ss_dssp             ----HH------------------HH--HHHHHTTCHHHHSSCHHHHHHHH---HCC-------CTTHHHHTTTCCC--C
T ss_pred             ----HH------------------HH--HHHHHhCCcchhcCCHHHHHHHH---ccCCCCCCCHHHHHHHHHHHHHcCHH
Confidence                11                  00  11122335789999999955544   44433  3577899999999987754


Q ss_pred             CccccccchhhhhhhHHHHHHHHHhcCCCCCcccChHHHHHHHhhhhhccCC-HHHHHHHHH
Q 007148          256 DSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVD-NSAREDLVK  316 (616)
Q Consensus       256 ~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~s~vsc~FL~~LLR~A~~l~as-~~cr~~LEk  316 (616)
                      ...         ..-..|++.| ++ |    . +|..||...++...++..+ +.|+..|++
T Consensus       211 ~R~---------~~~~~ll~~V-Rf-~----~-l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          211 IRK---------VHMKDVMSAL-WV-S----G-LDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             CST---------TTHHHHHHHH-HH-H----T-TCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             HHH---------HHHHHHHHhC-CC-C----C-CCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence            211         1124788887 88 5    5 9999999999999999998 789998875
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 616
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-09
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-08
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 25  SELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEIC 84
            ++ TDV+I V   +F  HK  L++ S      +     + +  +  +D    P+ F I 
Sbjct: 22  RDILTDVVIVVSREQFRAHKTVLMACSGLF-YSIFTDQLKRNLSVINLDPEINPEGFNIL 80

Query: 85  AKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSS 132
             F Y   +     N++A    A YL+M        ++     F+ +S
Sbjct: 81  LDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCRKFIKAS 122
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query616
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.83
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.83
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.36
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 96.94
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.09
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 95.64
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.19
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 90.06
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 88.03
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2e-21  Score=173.57  Aligned_cols=103  Identities=23%  Similarity=0.323  Sum_probs=91.8

Q ss_pred             eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-ccCCCCceeecCCCCCHHHHHHHHHHhcCceeEeeccc
Q 007148           21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYN   99 (616)
Q Consensus        21 ~~~~~~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~N   99 (616)
                      .++..|.+|||+|.|+|++|++||.+|+++|+||++||... .+.....+.+++++  |++|+.+++|+|||++.|+.+|
T Consensus        18 ~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~--~~~f~~ll~~~Ytg~~~i~~~~   95 (122)
T d1r29a_          18 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEIN--PEGFNILLDFMYTSRLNLREGN   95 (122)
T ss_dssp             HHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccC--HHHHHHHHhhhcCCeecCchhh
Confidence            36788999999999999999999999999999999999875 44444445557776  7999999999999999999999


Q ss_pred             HHHHHHhhhccCcchhcccccHHHHHHHHHHh
Q 007148          100 VVAARCAAEYLEMTEDVDKKNLIFKLEVFLNS  131 (616)
Q Consensus       100 V~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~  131 (616)
                      |..++.||++|||++      |++.|++||+.
T Consensus        96 v~~ll~~A~~l~i~~------L~~~C~~~L~~  121 (122)
T d1r29a_          96 IMAVMATAMYLQMEH------VVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence            999999999999984      88999999975
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure