Citrus Sinensis ID: 007149

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------

MLLPPPHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGITVNK

cccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHcccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccEEEEEEccccccHHHHHHHHcccccEEEcccccccEEEEEcccccccccccEEEEccccEEEEEEEccccccccccccccccccccccccccccEEEccccccccEEEEEEccccEEEEEEcccEEEEcEEEccccEEEEEEEcccEEEcccccccHHHHHHHHHHHHHHccccccEEEEEEEEEccccccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccccccEEEEccccHHHHHHHHHHHcccccccccccEEEccHHHHHHHHHccccEEccccccccccccccccc

ccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHcccEEEHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccEcccccEccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEcccccccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccccccccHHccccccccEEEEEEEEccEEEEEEEEcccEEEEEcccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccHHHHHHHHHcHHHHcccccccccccccccccc

mllppphydpndneAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFkknvpvvnyedikpyieriangepsdiisaqpitefltssgtsggqpkmmpstdedlerkTFFYNMLIPVMNKYVDDLDKGKAMYLLFvkpeirtpsglmarpvLTSYyksnsfrnrpfnrynvytspdetilcpdskqsmYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIrighvsdwitdpscrnAVSLILGRANQDLANLIEnecggeswEGIIKKIWPRTKYIEVIVTGsmaqyipilefysgglplvstmyassecyfginfkplckpsdvsytllpnmayfeflpveksngeltqefqcngisdqdcqhdeteivdltnvklghCYELVVTTFTglyryrvgDILMVTgfhnnapqfwfvHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYtayadtcsipghYVVFWELKskgsnnlseldTDIMEQCCSRVEESLDSVYRRCrkkdnsigpleirvvkdgtFDALMDFsvsqgssvnqyktprcikseeAINLLDSKVvgrffskrvpswepfgitvnk

mllppphydpnDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLtssgtsggqpkmMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKpeirtpsglmarPVLTSYyksnsfrnrpfnrynVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDltnvklghCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRrcrkkdnsigpleirvVKDGTFDALMDFsvsqgssvnqyKTPRCIKseeainlldskvvgrffskrvpswepfgitvnk

******************LLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGE**DII*******************************KTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGI****

**************AGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITE*************MMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQ**********HDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFS***********TPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFG*****

MLLPPPHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLT***************DEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGITVNK

*LLPPPHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEK*************ISD*****DETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFG*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		616	2.2.26 [Sep-21-2011]
Q9FZ87		609	Indole-3-acetic acid-amid	yes	no	0.978	0.990	0.709	0.0
Q8LQM5		610	Probable indole-3-acetic	yes	no	0.957	0.967	0.557	0.0
Q9LSQ4		612	Indole-3-acetic acid-amid	no	no	0.948	0.954	0.571	0.0
O81829		612	Indole-3-acetic acid-amid	no	no	0.948	0.954	0.576	0.0
Q60EJ6		629	Probable indole-3-acetic	no	no	0.933	0.914	0.560	0.0
O22190		595	Indole-3-acetic acid-amid	no	no	0.943	0.976	0.558	0.0
P0C0M3		591	Probable indole-3-acetic	no	no	0.933	0.972	0.562	0.0
Q9LYU4		575	4-substituted benzoates-g	no	no	0.913	0.979	0.561	0.0
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.926	0.943	0.536	0.0
A3BLS0		605	Probable indole-3-acetic	N/A	no	0.926	0.943	0.536	0.0

>sp\|Q9FZ87\|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1	Back alignment and function desciption

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/609 (70%), Positives = 504/609 (82%), Gaps = 6/609 (0%)

Query: 6   PHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQ 65
           P YDPND EAG+KLLEDLTTNA  IQ QVL +IL++N+ T+YL+ + +   G  D +  Q
Sbjct: 3   PSYDPNDTEAGLKLLEDLTTNAEAIQQQVLHQILSQNSGTQYLRAFLD---GEADKNQ-Q 58

Query: 66  VFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLE 125
            FK  VPVVNY+D+KP+I+RIA+GE SDI+SAQPITE LTSSGTS G+PK+MPST E+LE
Sbjct: 59  SFKNKVPVVNYDDVKPFIQRIADGESSDIVSAQPITELLTSSGTSAGKPKLMPSTAEELE 118

Query: 126 RKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRP 185
           RKTFFY+ML+P+MNKYVD LD+GK MYLLF+KPEI+TPSGLMARPVLTSYYKS  FRNRP
Sbjct: 119 RKTFFYSMLVPIMNKYVDGLDEGKGMYLLFIKPEIKTPSGLMARPVLTSYYKSQHFRNRP 178

Query: 186 FNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWK 245
           FN+YNVYTSPD+TILC DSKQSMYCQLLCGLVQR  VLRVGAVFASAFLRA+KFLED++K
Sbjct: 179 FNKYNVYTSPDQTILCQDSKQSMYCQLLCGLVQRSHVLRVGAVFASAFLRAVKFLEDHYK 238

Query: 246 ELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTK 305
           ELC++IR G V+ WITD SCR++V  IL   NQ+LA+ IE+EC  +SWEGI+++IWP+ K
Sbjct: 239 ELCADIRTGTVTSWITDSSCRDSVLSILNGPNQELADEIESECAEKSWEGILRRIWPKAK 298

Query: 306 YIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMA 365
           Y+EVIVTGSMAQYIP LEFYSGGLPLVSTMYASSECYFGIN  PLC P+DVSYTLLPNMA
Sbjct: 299 YVEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLNPLCDPADVSYTLLPNMA 358

Query: 366 YFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRY 425
           YFEFLPV+  + E       +   D D    E  IV+L NV++G  YE+V+TTFTGLYRY
Sbjct: 359 YFEFLPVDDKSHEEIHFATHSNTDDDDDALKEDLIVNLVNVEVGQYYEIVITTFTGLYRY 418

Query: 426 RVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKL--LIEPLGFLL 483
           RVGDIL VTGFHN APQF FV R+NV+LSIDTDKT+EEDLL AVT+AKL  L  P   LL
Sbjct: 419 RVGDILKVTGFHNKAPQFRFVQRRNVVLSIDTDKTSEEDLLNAVTQAKLNHLQHPSSLLL 478

Query: 484 TEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKD 543
           TEYT+YADT SIPGHYV+FWELK + SN+  +LD   ME CCS VE+ LD VYRRCR +D
Sbjct: 479 TEYTSYADTSSIPGHYVLFWELKPRHSNDPPKLDDKTMEDCCSEVEDCLDYVYRRCRNRD 538

Query: 544 NSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKR 603
            SIGPLEIRVV  GTFD+LMDF VSQGSS+NQYKTPRC+KS  A+ +LDS+V+GRFFSKR
Sbjct: 539 KSIGPLEIRVVSLGTFDSLMDFCVSQGSSLNQYKTPRCVKSGGALEILDSRVIGRFFSKR 598

Query: 604 VPSWEPFGI 612
           VP WEP G+
Sbjct: 599 VPQWEPLGL 607

Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Appears to favor Glu over Asp while the other GH3 favor Asp over Glu. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q8LQM5\|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function description

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|Q60EJ6\|GH34_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|P0C0M3\|GH311_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1	Back alignment and function description

>sp\|Q9LYU4\|GH312_ARATH 4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana GN=GH3.12 PE=1 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

>sp\|A3BLS0\|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		616
225425302		607	PREDICTED: indole-3-acetic acid-amido sy	0.967	0.981	0.805	0.0
224057862		606	GH3 family protein [Populus trichocarpa]	0.975	0.991	0.791	0.0
147771741		676	hypothetical protein VITISV_040921 [Viti	0.970	0.884	0.769	0.0
449468912		611	PREDICTED: indole-3-acetic acid-amido sy	0.972	0.980	0.765	0.0
255543248		590	Indole-3-acetic acid-amido synthetase GH	0.949	0.991	0.773	0.0
224072455		587	GH3 family protein [Populus trichocarpa]	0.949	0.996	0.776	0.0
15217844		609	indole-3-acetic acid-amido synthetase GH	0.978	0.990	0.709	0.0
297845760		609	GH3.17 [Arabidopsis lyrata subsp. lyrata	0.978	0.990	0.702	0.0
242068645		668	hypothetical protein SORBIDRAFT_05g01981	0.965	0.890	0.633	0.0
125534602		662	hypothetical protein OsI_36332 [Oryza sa	0.965	0.898	0.611	0.0

>gi\|225425302\|ref\|XP_002268278.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/603 (80%), Positives = 541/603 (89%), Gaps = 7/603 (1%)

Query: 9   DPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFK 68
           DP+DNEAG+ LLEDLTTNA Q+QL+VL+EILT+NA TEYL+GY +   GH D  +   FK
Sbjct: 6   DPHDNEAGLMLLEDLTTNANQVQLEVLEEILTQNANTEYLRGYLD---GHSDKGL---FK 59

Query: 69  KNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKT 128
           K VP+VNYEDIKP+IERIANGEPS IISAQPITE LTSSGTSGGQPK+MPST EDL+RKT
Sbjct: 60  KKVPIVNYEDIKPHIERIANGEPSRIISAQPITELLTSSGTSGGQPKLMPSTAEDLDRKT 119

Query: 129 FFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNR 188
           FFYN+LIPVMNKYVD LD+GK MYLLF+KPEI TPSGLMARPVLTSYYKS++FRNRPFN 
Sbjct: 120 FFYNLLIPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLMARPVLTSYYKSSNFRNRPFNP 179

Query: 189 YNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELC 248
           +NVYTSPDETILC DSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLED+W+ELC
Sbjct: 180 FNVYTSPDETILCLDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWRELC 239

Query: 249 SNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIE 308
           SNIR G VSDWITDPSCRNAVS  L +   DLA+ IE EC GESWEGIIK++WPRTKYIE
Sbjct: 240 SNIRTGCVSDWITDPSCRNAVSSFLSKPQPDLADFIEFECNGESWEGIIKRLWPRTKYIE 299

Query: 309 VIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFE 368
           VIVTGSMAQYIP LEFYSGGLPLVSTMYASSECY+GIN KPL KPSDVSYTLLPNMAYFE
Sbjct: 300 VIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYYGINLKPLSKPSDVSYTLLPNMAYFE 359

Query: 369 FLPVEKSNGELTQEFQCN-GISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRV 427
           FLPV+K+NGE+TQ+ QCN G   ++ +  E E+V L +VK+GH YELVVTTFTGLYRYR 
Sbjct: 360 FLPVQKNNGEVTQQVQCNGGCIKKEGERVEIEVVGLVDVKVGHYYELVVTTFTGLYRYRT 419

Query: 428 GDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYT 487
           GDILMVTGF+NNAPQF FV R+NV+LSIDTDKTNEEDLLKAVT+AKLL+EP GFLLTEYT
Sbjct: 420 GDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEPYGFLLTEYT 479

Query: 488 AYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIG 547
           +YADT SIPGHYV+FWELK++G+N+LSE D  IMEQCCS VEESLDSVYRRCR++DNSIG
Sbjct: 480 SYADTSSIPGHYVLFWELKTRGNNDLSEPDHTIMEQCCSTVEESLDSVYRRCRRRDNSIG 539

Query: 548 PLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSW 607
           PLEIR+VK GTFDALMDF VSQGSSVNQYKTPRCIKS+EAI +LDS+VVG+ FSK+VP W
Sbjct: 540 PLEIRIVKPGTFDALMDFCVSQGSSVNQYKTPRCIKSKEAIKILDSRVVGKVFSKKVPFW 599

Query: 608 EPF 610
           EPF
Sbjct: 600 EPF 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224057862\|ref\|XP_002299361.1\| GH3 family protein [Populus trichocarpa] gi\|222846619\|gb\|EEE84166.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147771741\|emb\|CAN78161.1\| hypothetical protein VITISV_040921 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449468912\|ref\|XP_004152165.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.17-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255543248\|ref\|XP_002512687.1\| Indole-3-acetic acid-amido synthetase GH3.17, putative [Ricinus communis] gi\|223548648\|gb\|EEF50139.1\| Indole-3-acetic acid-amido synthetase GH3.17, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224072455\|ref\|XP_002303740.1\| GH3 family protein [Populus trichocarpa] gi\|222841172\|gb\|EEE78719.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi|15217844|ref|NP_174134.1| indole-3-acetic acid-amido synthetase GH3.17 [Arabidopsis thaliana] gi|62900379|sp|Q9FZ87.1|GH317_ARATH RecName: Full=Indole-3-acetic acid-amido synthetase GH3.17; AltName: Full=Auxin-responsive GH3-like protein 17; Short=AtGH3-17 gi|9795624|gb|AAF98442.1|AC021044_21 Unknown protein [Arabidopsis thaliana] gi|12322991|gb|AAG51481.1|AC069471_12 unknown protein [Arabidopsis thaliana] gi|15450365|gb|AAK96476.1| At1g28130/F3H9_19 [Arabidopsis thaliana] gi|21360519|gb|AAM47375.1| At1g28130/F3H9_19 [Arabidopsis thaliana] gi|332192800|gb|AEE30921.1| indole-3-acetic acid-amido synthetase GH3.17 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297845760\|ref\|XP_002890761.1\| GH3.17 [Arabidopsis lyrata subsp. lyrata] gi\|297336603\|gb\|EFH67020.1\| GH3.17 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|242068645\|ref\|XP_002449599.1\| hypothetical protein SORBIDRAFT_05g019810 [Sorghum bicolor] gi\|241935442\|gb\|EES08587.1\| hypothetical protein SORBIDRAFT_05g019810 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|125534602\|gb\|EAY81150.1\| hypothetical protein OsI_36332 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		616
TAIR\|locus:2010484		609	GH3.17 [Arabidopsis thaliana (	0.977	0.988	0.711	1.4e-236
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.948	0.954	0.574	1.4e-183
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.946	0.952	0.576	2.9e-183
TAIR\|locus:2201170		578	AT1G23160 [Arabidopsis thalian	0.579	0.617	0.579	1.1e-181
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.592	0.613	0.596	2.1e-180
TAIR\|locus:2043308		585	GH3.9 "AT2G47750" [Arabidopsis	0.936	0.986	0.57	1.2e-177
UNIPROTKB\|P0C0M3		591	GH3.11 "Probable indole-3-acet	0.925	0.964	0.572	3.1e-177
UNIPROTKB\|Q60EJ6		629	GH3.4 "Probable indole-3-aceti	0.928	0.909	0.567	8.3e-177
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.587	0.613	0.583	2e-175
TAIR\|locus:2183881		587	AT5G13350 [Arabidopsis thalian	0.946	0.993	0.538	7.2e-171

TAIR\|locus:2010484 GH3.17 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2281 (808.0 bits), Expect = 1.4e-236, P = 1.4e-236
 Identities = 434/610 (71%), Positives = 508/610 (83%)

Query:     6 PHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQ 65
             P YDPND EAG+KLLEDLTTNA  IQ QVL +IL++N+ T+YL+ + +   G  D +  Q
Sbjct:     3 PSYDPNDTEAGLKLLEDLTTNAEAIQQQVLHQILSQNSGTQYLRAFLD---GEADKNQ-Q 58

Query:    66 VFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLE 125
              FK  VPVVNY+D+KP+I+RIA+GE SDI+SAQPITE LTSSGTS G+PK+MPST E+LE
Sbjct:    59 SFKNKVPVVNYDDVKPFIQRIADGESSDIVSAQPITELLTSSGTSAGKPKLMPSTAEELE 118

Query:   126 RKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRP 185
             RKTFFY+ML+P+MNKYVD LD+GK MYLLF+KPEI+TPSGLMARPVLTSYYKS  FRNRP
Sbjct:   119 RKTFFYSMLVPIMNKYVDGLDEGKGMYLLFIKPEIKTPSGLMARPVLTSYYKSQHFRNRP 178

Query:   186 FNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWK 245
             FN+YNVYTSPD+TILC DSKQSMYCQLLCGLVQR  VLRVGAVFASAFLRA+KFLED++K
Sbjct:   179 FNKYNVYTSPDQTILCQDSKQSMYCQLLCGLVQRSHVLRVGAVFASAFLRAVKFLEDHYK 238

Query:   246 ELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTK 305
             ELC++IR G V+ WITD SCR++V  IL   NQ+LA+ IE+EC  +SWEGI+++IWP+ K
Sbjct:   239 ELCADIRTGTVTSWITDSSCRDSVLSILNGPNQELADEIESECAEKSWEGILRRIWPKAK 298

Query:   306 YIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMA 365
             Y+EVIVTGSMAQYIP LEFYSGGLPLVSTMYASSECYFGIN  PLC P+DVSYTLLPNMA
Sbjct:   299 YVEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLNPLCDPADVSYTLLPNMA 358

Query:   366 YFEFLPVE-KSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYR 424
             YFEFLPV+ KS+ E+      N   D D   ++  IV+L NV++G  YE+V+TTFTGLYR
Sbjct:   359 YFEFLPVDDKSHEEIHFATHSNTDDDDDALKEDL-IVNLVNVEVGQYYEIVITTFTGLYR 417

Query:   425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKL--LIEPLGFL 482
             YRVGDIL VTGFHN APQF FV R+NV+LSIDTDKT+EEDLL AVT+AKL  L  P   L
Sbjct:   418 YRVGDILKVTGFHNKAPQFRFVQRRNVVLSIDTDKTSEEDLLNAVTQAKLNHLQHPSSLL 477

Query:   483 LTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKK 542
             LTEYT+YADT SIPGHYV+FWELK + SN+  +LD   ME CCS VE+ LD VYRRCR +
Sbjct:   478 LTEYTSYADTSSIPGHYVLFWELKPRHSNDPPKLDDKTMEDCCSEVEDCLDYVYRRCRNR 537

Query:   543 DNSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSK 602
             D SIGPLEIRVV  GTFD+LMDF VSQGSS+NQYKTPRC+KS  A+ +LDS+V+GRFFSK
Sbjct:   538 DKSIGPLEIRVVSLGTFDSLMDFCVSQGSSLNQYKTPRCVKSGGALEILDSRVIGRFFSK 597

Query:   603 RVPSWEPFGI 612
             RVP WEP G+
Sbjct:   598 RVPQWEPLGL 607

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009733 "response to auxin stimulus" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=TAS

GO:0010279 "indole-3-acetic acid amido synthetase activity" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2201170 AT1G23160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043308 GH3.9 "AT2G47750" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M3 GH3.11 "Probable indole-3-acetic acid-amido synthetase GH3.11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60EJ6 GH3.4 "Probable indole-3-acetic acid-amido synthetase GH3.4" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2183881 AT5G13350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3BLS0	GH38_ORYSI	6, ., 3, ., 2, ., -	0.5362	0.9269	0.9438	N/A	no
Q9FZ87	GH317_ARATH	6, ., 3, ., 2, ., -	0.7093	0.9788	0.9901	yes	no
Q8LQM5	GH31_ORYSJ	6, ., 3, ., 2, ., -	0.5579	0.9577	0.9672	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		616
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	0.0
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	0.0
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	0.0
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	0.0

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

 Score = 1131 bits (2926), Expect = 0.0
 Identities = 497/608 (81%), Positives = 543/608 (89%), Gaps = 7/608 (1%)

Query: 6   PHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQ 65
           P YDPNDNEAG+KLLEDLTTNA QIQ QVL+EILT+NA TEYL+ + +   G  D    Q
Sbjct: 3   PSYDPNDNEAGLKLLEDLTTNACQIQQQVLEEILTQNAGTEYLRSFLD---GESDK---Q 56

Query: 66  VFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLE 125
            FK  VPVVNYEDIKP IERIANGE S IISAQPITE LTSSGTSGGQPK+MPST E+L+
Sbjct: 57  SFKNKVPVVNYEDIKPCIERIANGESSSIISAQPITELLTSSGTSGGQPKLMPSTAEELD 116

Query: 126 RKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRP 185
           RKTFFYN+L+PVMNKYVD LD+GK MYLLF+KPEI TPSGLMARPVLTSYYKS++FRNRP
Sbjct: 117 RKTFFYNLLVPVMNKYVDGLDQGKGMYLLFIKPEISTPSGLMARPVLTSYYKSSNFRNRP 176

Query: 186 FNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWK 245
           FNRYNVYTSPDETILC DSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLED+WK
Sbjct: 177 FNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWK 236

Query: 246 ELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTK 305
           ELCSNIR G VSDWITDPSCRNAVS IL + N +LA+LIE+EC G+SWEGIIK++WPRTK
Sbjct: 237 ELCSNIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGIIKRLWPRTK 296

Query: 306 YIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMA 365
           YIEVIVTGSMAQYIP LEFYSGGLPLVSTMYASSECYFGIN KPL  PSDVSYTLLPNMA
Sbjct: 297 YIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMA 356

Query: 366 YFEFLPVEKSNGELTQEFQCNGISDQDC-QHDETEIVDLTNVKLGHCYELVVTTFTGLYR 424
           YFEFLPV+K+NGE+    QCNG  D D    ++ EIVDL +VK+GH YELVVTTFTGLYR
Sbjct: 357 YFEFLPVDKNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFTGLYR 416

Query: 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLT 484
           YRVGDILMVTGF+NNAPQF FV R+NV+LSIDTDKTNEEDLLKAVT+AKLL+EPLGFLLT
Sbjct: 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEPLGFLLT 476

Query: 485 EYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDN 544
           EYT+YADT SIPGHYV+FWELK++GSN+  ELD  IMEQCCS VEESLDSVYRRCRK+D 
Sbjct: 477 EYTSYADTSSIPGHYVLFWELKTRGSNDPPELDPKIMEQCCSTVEESLDSVYRRCRKRDK 536

Query: 545 SIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRV 604
           SIGPLEIRVVK GTFDALMDF VSQGSSVNQYKTPRCIKSEEA+ +LDS+V+GRFFSKRV
Sbjct: 537 SIGPLEIRVVKHGTFDALMDFCVSQGSSVNQYKTPRCIKSEEALKILDSRVIGRFFSKRV 596

Query: 605 PSWEPFGI 612
           P WEPFG+
Sbjct: 597 PFWEPFGM 604

Length = 606

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		616
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.94
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.93
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.89
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.84
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	99.41
PRK00174		637	acetyl-CoA synthetase; Provisional	99.27
PTZ00237		647	acetyl-CoA synthetase; Provisional	99.25
PRK07529		632	AMP-binding domain protein; Validated	99.24
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	99.23
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.23
PRK07514		504	malonyl-CoA synthase; Validated	99.18
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	99.17
PRK06060		705	acyl-CoA synthetase; Validated	99.17
PRK09274		552	peptide synthase; Provisional	99.16
PLN02574		560	4-coumarate--CoA ligase-like	99.14
PLN02654		666	acetate-CoA ligase	99.14
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	99.14
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.13
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.13
PRK07788		549	acyl-CoA synthetase; Validated	99.13
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	99.13
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	99.13
PRK04319		570	acetyl-CoA synthetase; Provisional	99.12
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	99.12
PRK09088		488	acyl-CoA synthetase; Validated	99.11
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.1
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	99.09
PRK06164		540	acyl-CoA synthetase; Validated	99.09
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.08
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	99.08
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	99.06
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.05
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	99.05
PRK06145		497	acyl-CoA synthetase; Validated	99.04
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.04
PRK07867		529	acyl-CoA synthetase; Validated	99.03
PRK07638		487	acyl-CoA synthetase; Validated	99.02
PRK07470		528	acyl-CoA synthetase; Validated	99.02
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	99.02
PRK06839		496	acyl-CoA synthetase; Validated	99.01
PLN02246		537	4-coumarate--CoA ligase	99.01
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	99.01
PLN02860		563	o-succinylbenzoate-CoA ligase	99.0
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	99.0
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.0
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.99
PLN02736		651	long-chain acyl-CoA synthetase	98.98
PRK08316		523	acyl-CoA synthetase; Validated	98.98
PRK05852		534	acyl-CoA synthetase; Validated	98.97
PRK12583		558	acyl-CoA synthetase; Provisional	98.97
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	98.96
PRK13383		516	acyl-CoA synthetase; Provisional	98.96
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	98.96
PLN02330		546	4-coumarate--CoA ligase-like 1	98.96
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.95
PRK13382		537	acyl-CoA synthetase; Provisional	98.94
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	98.94
PLN03051		499	acyl-activating enzyme; Provisional	98.94
PRK13388		540	acyl-CoA synthetase; Provisional	98.94
PTZ00342		746	acyl-CoA synthetase; Provisional	98.94
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	98.93
PLN02614		666	long-chain acyl-CoA synthetase	98.93
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	98.93
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	98.92
PRK10946		536	entE enterobactin synthase subunit E; Provisional	98.92
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	98.91
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	98.9
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	98.9
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	98.9
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	98.89
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	98.88
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	98.88
PRK12467		3956	peptide synthase; Provisional	98.87
PRK07787		471	acyl-CoA synthetase; Validated	98.87
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	98.86
PRK12467		3956	peptide synthase; Provisional	98.85
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	98.84
PRK08315		559	AMP-binding domain protein; Validated	98.84
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	98.83
PRK05857		540	acyl-CoA synthetase; Validated	98.83
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	98.82
PLN02861		660	long-chain-fatty-acid-CoA ligase	98.82
PRK06188		524	acyl-CoA synthetase; Validated	98.82
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	98.81
PRK05850		578	acyl-CoA synthetase; Validated	98.81
PRK08308		414	acyl-CoA synthetase; Validated	98.8
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	98.79
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	98.79
PRK12316		5163	peptide synthase; Provisional	98.79
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	98.78
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	98.78
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	98.77
PRK09192		579	acyl-CoA synthetase; Validated	98.76
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	98.75
PRK12316		5163	peptide synthase; Provisional	98.75
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	98.75
PLN03052		728	acetate--CoA ligase; Provisional	98.74
PRK06178		567	acyl-CoA synthetase; Validated	98.73
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.73
PLN02430		660	long-chain-fatty-acid-CoA ligase	98.73
PLN03102		579	acyl-activating enzyme; Provisional	98.73
PRK05691		4334	peptide synthase; Validated	98.72
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	98.71
PRK05691		4334	peptide synthase; Validated	98.7
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	98.69
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	98.68
PRK08180		614	feruloyl-CoA synthase; Reviewed	98.63
PRK12582		624	acyl-CoA synthetase; Provisional	98.6
PRK06018		542	putative acyl-CoA synthetase; Provisional	98.6
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	98.51
PRK07868		994	acyl-CoA synthetase; Validated	98.45
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	98.43
PRK13390		501	acyl-CoA synthetase; Provisional	98.39
PRK13391		511	acyl-CoA synthetase; Provisional	98.37
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	98.36
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.29
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	98.28
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	98.27
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	98.19
PRK07798		533	acyl-CoA synthetase; Validated	98.12
PTZ00216		700	acyl-CoA synthetase; Provisional	98.01
PRK08162		545	acyl-CoA synthetase; Validated	97.87
PLN02479		567	acetate-CoA ligase	97.7
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	97.55
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	97.41
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	95.33
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	93.44
PRK09188		365	serine/threonine protein kinase; Provisional	85.72

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=1e-137  Score=1148.16  Aligned_cols=588  Identities=59%  Similarity=1.042  Sum_probs=549.9

Q ss_pred             CCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcC
Q 007149           10 PNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANG   89 (616)
Q Consensus        10 ~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~G   89 (616)
                      ..+|++.++.+|+.++||.++|+++|++||++|++|+|||+ |||+ +|+++++   ||++|||++|||++|||+||++|
T Consensus        18 ~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~-~~f~-~i~~~~~---F~~~VPv~~Yedl~pyI~Ri~~G   92 (612)
T PLN02620         18 AEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQR-HGLN-GRTDRET---FKKVMPVITYEDIQPDINRIANG   92 (612)
T ss_pred             ccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHh-cCCC-CCCCHHH---HHHhCCCccHHHhHHHHHHHHcC
Confidence            45568889999999999999999999999999999999999 9999 9999999   99999999999999999999999


Q ss_pred             CCCccccCcccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceee
Q 007149           90 EPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMAR  169 (616)
Q Consensus        90 e~~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G  169 (616)
                      |.++|||++||.+|++|||||||++|+||+|+++++.++.++.+|..++++.+|++..||.||+++.+.+.+|++|||+|
T Consensus        93 e~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g  172 (612)
T PLN02620         93 DTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVAR  172 (612)
T ss_pred             CCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccc
Confidence            98899999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHH
Q 007149          170 PVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCS  249 (616)
Q Consensus       170 ~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~  249 (616)
                      ++|+.+++|..|++++..+...|++|.++++++|..|+|||||||||.++++|..|+++|+++|+.++++|+++|++||+
T Consensus       173 ~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~  252 (612)
T PLN02620        173 PVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCR  252 (612)
T ss_pred             cccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhhcCCC
Q 007149          250 NIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGL  329 (616)
Q Consensus       250 dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~~~~  329 (616)
                      ||++|+++++++++++|.++.+.|+ |||++|+.|+.+|.+.+|.|++++|||||++|+||++|+|++|++.|++|+||+
T Consensus       253 DI~~G~ls~~itd~~~R~av~~~L~-p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~ggl  331 (612)
T PLN02620        253 DIRTGTIDSQITDPSVREAVMKILK-PDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGL  331 (612)
T ss_pred             HHhcCCCCccCCCHHHHHHHHhhcC-CCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCC
Confidence            9999999999999999999999997 999999999999999889999999999999999999999999999999999999


Q ss_pred             CeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCC--CCCCCCCCcceeeccccC
Q 007149          330 PLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGIS--DQDCQHDETEIVDLTNVK  407 (616)
Q Consensus       330 ~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~l~ev~  407 (616)
                      |+++.+|+||||+||||++|.|+|++.+|+|+|+++||||||+++.+...      ++++  +..+..+++++|+++|||
T Consensus       332 pl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~------~~~~~~~~~~~~~~~~~v~l~ev~  405 (612)
T PLN02620        332 PLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVT------NSISLPKSLNEKEQQELVDLVDVK  405 (612)
T ss_pred             ccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCccccc------ccccccccccccccCccccHHHcc
Confidence            99999999999999999999999999999999999999999988633100      0000  000002336799999999


Q ss_pred             CCceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEE
Q 007149          408 LGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYT  487 (616)
Q Consensus       408 ~G~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~  487 (616)
                      +|++|||||||++||||||+||||+|+||||++|+|+|++|.+.++|++|||++|++|..||.+|.+.+.+.++.|+||+
T Consensus       406 ~G~~YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyt  485 (612)
T PLN02620        406 LGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEYT  485 (612)
T ss_pred             CCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999987766789999999


Q ss_pred             EeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHHHHH
Q 007149          488 AYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSV  567 (616)
Q Consensus       488 ~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~~~~  567 (616)
                      +++|.++.||||+||||+...+.   ..++++.+++||..||++||++|+.+|..+++|||++|++|++|||++++++++
T Consensus       486 s~~d~~~~PghYvl~~El~~~~~---~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~  562 (612)
T PLN02620        486 SYADTSTIPGHYVLFWELCLNGS---TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAI  562 (612)
T ss_pred             eccccCCCCCceEEEEEEecCCC---CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHH
Confidence            99998899999999999953222   135778999999999999999999999766579999999999999999999999


Q ss_pred             hcCCCCCCccCCcccCCHHHHHHHhcccceeeeccCCCCCccCCc
Q 007149          568 SQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGI  612 (616)
Q Consensus       568 ~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  612 (616)
                      ++|++.||||+|||+++++++++|+++|+++|||+++|+|.|+.+
T Consensus       563 ~~G~s~~QyK~Pr~v~~~~~~~~l~~~v~~~~~s~~~~~~~~~~~  607 (612)
T PLN02620        563 SLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVPGHK  607 (612)
T ss_pred             HcCCccccccCceEecCHHHHHHHHhhhheeeccccCCCCCcccc
Confidence            999999999999999999999999999999999999999999854

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		616
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		0.0
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		0.0
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		0.0
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		1e-106

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

Iteration: 1

Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/594 (56%), Positives = 439/594 (73%), Gaps = 21/594 (3%) Query: 16 GMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVN 75 ++ +E++T NA +Q +VL EIL+RN +TEYLK F L V + FK +PV+ Sbjct: 22 ALQFIEEMTRNADSVQERVLAEILSRNGETEYLK-RFKLE----GSTVRETFKSKIPVIK 76 Query: 76 YEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLI 135 YED++P I+RIANG+ S I+SA PI+EFLTSSGTS G+ K+MP+ E+L+R+ Y++L+ Sbjct: 77 YEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLM 136 Query: 136 PVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSP 195 PVMN YV LDKGK +Y LFVK E RTP GL+ARPVLTSYYKS F+ RP++ YNVYTSP Sbjct: 137 PVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSP 196 Query: 196 DETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGH 255 +E ILC DS QSMY Q+LCG+ +R +VLR+GAVFAS LRAI+FL+ W +L +IR G Sbjct: 197 NEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGT 256 Query: 256 VSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM 315 +S ITDPS RN V+ +L + + +LA+L+ EC ++WEGII +IWP TKY++VIVTG+M Sbjct: 257 LSPKITDPSVRNCVAGVL-KPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAM 315 Query: 316 AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKS 375 AQYIP L++YSGGLPL TMYASSECYFG+N P+ KPS+VSYT++PNMAYFEFLP E S Sbjct: 316 AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHS 375 Query: 376 NGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTG 435 + L+++ +VDL +V++G YELV+TT+ GLYRYRVGDIL VTG Sbjct: 376 SIPLSRD-------------SPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTG 422 Query: 436 FHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSI 495 FHN+APQF FV RKNV+LSID+DKT+E +L KAV A L+ + + EYT++ADT +I Sbjct: 423 FHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTI 482 Query: 496 PGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVK 555 PGHYV++WEL K S N +++ QCC +EESL+SVYR+ R DNSIGPLEIRVVK Sbjct: 483 PGHYVIYWELLVKDSAN--SPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVK 540 Query: 556 DGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEP 609 GTF+ LMD+++S+G+S+NQYK PRC+ + LLDS+VV FS +P W P Sbjct: 541 SGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTP 594

PyMOL of 4b2g

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		616
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-171
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-161
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

 Score =  498 bits (1282), Expect = e-171
 Identities = 334/605 (55%), Positives = 435/605 (71%), Gaps = 32/605 (5%)

Query: 1   MLLPPPHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFD 60
           M    P +D N  E   K L+DLT+N   IQ  +L+EI+T N KTEYL+ +        D
Sbjct: 4   MASMKPIFDIN--ETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF------LID 55

Query: 61  VDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPST 120
               ++FKKNVP+V+YEDIKPY++R+ NGE SD+ISA+ IT FL SSGTSGG  KMMP  
Sbjct: 56  RFDKELFKKNVPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWN 115

Query: 121 DEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNS 180
           ++ L+  TF Y++ + V+ K+V  +++GK M  LF K E  TPSGL AR   +SY+KS+ 
Sbjct: 116 NKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDY 175

Query: 181 FRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFL 240
           F+NRP N Y  YTSPDE ILCP++ +S+YC LLCGLVQRDEV+R G++FAS  +RAI+ L
Sbjct: 176 FKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVL 235

Query: 241 EDYWKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKI 300
           ++ W+ELCSNIR GH+S+W+TD  C+N+VSL+LG    +LA+ IE  C   SW+GI+K++
Sbjct: 236 KNSWEELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRL 295

Query: 301 WPRTKYIEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTL 360
           WP TKYIE +VTGSM QY+P+L +Y   LPLVST Y SSE  FGIN  PLCKP DVSYT 
Sbjct: 296 WPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTF 355

Query: 361 LPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFT 420
           +PNM+YFEF+P++                      D+ ++VDL +VKLG  YE VVT F 
Sbjct: 356 MPNMSYFEFIPMDGG--------------------DKNDVVDLEDVKLGCTYEPVVTNFA 395

Query: 421 GLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLG 480
           GLYR RVGDI++VTGF+NNAPQF FV R+NV+LSID+DKTNEEDL KAV++AKL++E  G
Sbjct: 396 GLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSG 455

Query: 481 FLLTEYTAYADTCSIPGHYVVFWELKSKGSNNL----SELDTDIMEQCCSRVEESLDSVY 536
             L ++T+YADT + PGHYVV+ E+ +K          ELD + +  CC  +EESLD+VY
Sbjct: 456 LDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVY 515

Query: 537 RRCRKKDNSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVV 596
           +RCR KD SIGPLEIRVV+ GTFD+LMDF +SQG+S  QYKTPRCIKS +A+ +L++ VV
Sbjct: 516 KRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETCVV 575

Query: 597 GRFFS 601
            +FFS
Sbjct: 576 AKFFS 580

PyMOL of 4eql

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		616
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.86
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.84
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.84
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.48
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.39
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.36
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	99.34
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.33
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.32
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.31
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.29
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.25
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.25
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.23
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	99.23
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	99.23
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.23
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.22
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.22
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.21
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.2
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.2
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.18
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.18
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.14
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.14
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.13
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	99.13
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	99.12
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	99.12
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.11
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	98.99
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	98.94
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	98.93
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	98.81
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	97.95
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	97.33
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	96.96

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

Probab=100.00  E-value=2.5e-135  Score=1140.60  Aligned_cols=586  Identities=57%  Similarity=1.004  Sum_probs=533.4

Q ss_pred             CCCCCCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHH
Q 007149            6 PHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIER   85 (616)
Q Consensus         6 ~~~~~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieR   85 (616)
                      +..+.++|++.++.||+.++||.++|+++|++||++|++|+|||+ |||+ +|++.+|   |+++|||++|||++|||+|
T Consensus        12 ~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~-~gf~-~i~~~~d---F~~~VPv~~Yedl~p~ieR   86 (609)
T 4b2g_A           12 GPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKR-FKLE-GSTVRET---FKSKIPVIKYEDLQPEIQR   86 (609)
T ss_dssp             ----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHT-TCCT-TCCSHHH---HHHHSCCBCHHHHHHHHHH
T ss_pred             hhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHh-cCCC-CCCCHHH---HHHhCCCccHHHHHHHHHH
Confidence            345567789999999999999999999999999999999999999 9999 9999999   9999999999999999999


Q ss_pred             HHcCCCCccccCcccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCC
Q 007149           86 IANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSG  165 (616)
Q Consensus        86 i~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~G  165 (616)
                      |++||.++|||++||.+|++|||||+|++|+||+|+++++.+.+++++|..++++++|+++.||.|+|++++.+..|++|
T Consensus        87 i~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G  166 (609)
T 4b2g_A           87 IANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGG  166 (609)
T ss_dssp             HHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTS
T ss_pred             HhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCC
Confidence            99999889999999999999999999999999999999999888899999999999999888999999888888899999


Q ss_pred             ceeeeccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHH
Q 007149          166 LMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWK  245 (616)
Q Consensus       166 i~~G~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~  245 (616)
                      +++|++|+.+++|+.|+++|.++...|++|.+++.++|..+++||||||||.++++|+.|+++|+++|+++++.|+++|+
T Consensus       167 i~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~We  246 (609)
T 4b2g_A          167 LLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWH  246 (609)
T ss_dssp             CEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhh
Q 007149          246 ELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFY  325 (616)
Q Consensus       246 el~~dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~  325 (616)
                      +||+||++||++++++++++|++++..++ |+|++|++|+++|++.+|.|++++|||||++|+||++|+|++|+++|+++
T Consensus       247 el~~dI~~gtl~~~it~~~~r~a~~~~ls-p~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~  325 (609)
T 4b2g_A          247 QLTHDIRTGTLSPKITDPSVRNCVAGVLK-PDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYY  325 (609)
T ss_dssp             HHHHHHHHTCCCTTCCCHHHHHHTTTTCC-CCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHH
T ss_pred             HHHHHHHhccCCcCCCCHHHHHHHhcCCC-cCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHH
Confidence            99999999999999999999999999898 99999999999999977999999999999999999999999999999999


Q ss_pred             cCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccc
Q 007149          326 SGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTN  405 (616)
Q Consensus       326 ~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~e  405 (616)
                      +|++|+++++|+||||+||+|++|.|+|+..+|+|+|+.+||||||+++.+..           .++  .+++++|+++|
T Consensus       326 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~-----------~~~--~~~~~~v~l~e  392 (609)
T 4b2g_A          326 SGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP-----------LSR--DSPPRLVDLAH  392 (609)
T ss_dssp             HTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC-----------CCS--SSCCCCEEGGG
T ss_pred             cCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc-----------ccc--CCCCccccHhH
Confidence            99999999999999999999999999988899999999999999998864100           000  24478999999


Q ss_pred             cCCCceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEe
Q 007149          406 VKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTE  485 (616)
Q Consensus       406 v~~G~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~  485 (616)
                      ||+|++|||||||++||||||+||+|+|+||++++|+|+|+||++++||++||||+|++|++||.+|++.|+++|+.|.|
T Consensus       393 Ve~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~e  472 (609)
T 4b2g_A          393 VEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVE  472 (609)
T ss_dssp             CCTTCEEEEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEE
T ss_pred             cCCCCeEEEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999877789999999


Q ss_pred             EEEeecCCCCCceEEEEEEEeec-CCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHH
Q 007149          486 YTAYADTCSIPGHYVVFWELKSK-GSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMD  564 (616)
Q Consensus       486 f~~~~~~~~~~~~Y~l~~ele~~-~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~  564 (616)
                      ||+++|.++.||||+||||+++. +.   ..++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|++
T Consensus       473 ft~~~d~~~~p~Hyv~~wEl~~~~~~---~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~  549 (609)
T 4b2g_A          473 YTSFADTKTIPGHYVIYWELLVKDSA---NSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMD  549 (609)
T ss_dssp             EEEEEECSSSSCEEEEEEEEEESCGG---GCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC---
T ss_pred             EEEecCCCCCCCcEEEEEEEeccccc---CCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHH
Confidence            99999888889999999999741 11   145678999999999999999999999777899999999999999999999


Q ss_pred             HHHhcCCCCCCccCCcccCCHHHHHHHhcccceeeeccCCCCCccCCcc
Q 007149          565 FSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGIT  613 (616)
Q Consensus       565 ~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  613 (616)
                      +++++|+++||||+|||+++++++++|+++|+++|||+++|.|.|....
T Consensus       550 ~~~~~G~~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~  598 (609)
T 4b2g_A          550 YAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR  598 (609)
T ss_dssp             -------------CCSSCC--CCHHHHHTTEEEEEECCSCCCCCSCCC-
T ss_pred             HHHhCCCCCCCcCCCcccCCHHHHHHHHhcccccccCCCCCCCCcccch
Confidence            9999999999999999999999999999999999999999999998653

PyMOL of 4b2g

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		616
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.24
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.11
d1amua_		514	Phenylalanine activating domain of gramicidin synt	99.04
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.97
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.57
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	98.5
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	97.97

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.24  E-value=1.3e-10  Score=129.61  Aligned_cols=110  Identities=15%  Similarity=0.206  Sum_probs=72.5

Q ss_pred             cCCCceeEEEEccc-----cceec----------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149          406 VKLGHCYELVVTTF-----TGLYR----------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED  464 (616)
Q Consensus       406 v~~G~~yelVvTt~-----~GlyR----------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~  464 (616)
                      ++.|+.+||+|+..     .|+|.                |+|||+++++.    ...+.|+||.+++|++.|+++.+.+
T Consensus       452 ~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~GR~dd~ik~~G~ri~p~e  527 (643)
T d1pg4a_         452 QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWITGRVDDVLNVSGHRLGTAE  527 (643)
T ss_dssp             CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEEEESSSEEEETTEEEEHHH
T ss_pred             CCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----CceEEEecccccEEEECCEEECHHH
Confidence            57899999999752     23332                88999999983    5689999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCEEEeEEEee-cCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhh
Q 007149          465 LLKAVTEAKLLIEPLGFLLTEYTAYA-DTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESL  532 (616)
Q Consensus       465 v~~av~~a~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~L  532 (616)
                      ||.+|.+.      .+  |.+-+|+. +.......-+.|+.+.. +.    ..+.+...++.+.+.+.|
T Consensus       528 IE~~l~~~------p~--V~eaaVvg~~d~~~ge~~~a~Vv~~~-~~----~~~~~~~~~i~~~~~~~L  583 (643)
T d1pg4a_         528 IESALVAH------PK--IAEAAVVGIPHAIKGQAIYAYVTLNH-GE----EPSPELYAEVRNWVRKEI  583 (643)
T ss_dssp             HHHHHHHS------TT--EEEEEEEEEEETTTEEEEEEEEEECT-TC----CCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC------CC--cceEEEEEEECCCCCeEEEEEEEECC-CC----CCCHHHHHHHHHHHHhhC
Confidence            99999762      22  33444322 21111123346777652 32    344544444544454444

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure