Citrus Sinensis ID: 007163

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKMLS
ccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccHHHccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHHHEEEEEccccccccccHcccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHccccccccccEEEEccHHHHHHHHHHHcccccccccHcccccccccccEEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHc
memsypstprwnierpfltgrfhqETKAASRFadsfsnngaemAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVnhvhgndtydstvTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRStaaaadpchedltcsVERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKMLS
memsypstprwnierpFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTaaaadpchedltcsverssLLKRMATLKGveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKMLS
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKMLS
***********NIERPFLTGRFH********FADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEI*******DLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDR*******
***SYPSTPRWNIERPFLTGR********************************ELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKG**************PVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARA*NASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKML*
********PRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKMLS
*EMSYPSTPRWNIERPFLTGRFHQET*AAS***********EMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE*******VDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKMLS
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MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFxxxxxxxxxxxxxxxxxxxxxFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDAGLEYVRQDRRMWKMLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query615 2.2.26 [Sep-21-2011]
Q921G8 905 Gamma-tubulin complex com yes no 0.920 0.625 0.398 1e-126
Q9BSJ2 902 Gamma-tubulin complex com yes no 0.920 0.627 0.396 1e-124
Q5R5J6 902 Gamma-tubulin complex com yes no 0.920 0.627 0.393 1e-124
Q95ZG3 1335 Spindle pole body compone yes no 0.952 0.438 0.311 4e-97
Q9XYP7 852 Gamma-tubulin complex com yes no 0.852 0.615 0.335 7e-92
Q9Y705784 Spindle pole body compone yes no 0.874 0.686 0.313 3e-71
Q96CW5 907 Gamma-tubulin complex com no no 0.796 0.540 0.257 4e-45
O73787 906 Gamma-tubulin complex com N/A no 0.814 0.552 0.253 1e-44
P58854 905 Gamma-tubulin complex com no no 0.840 0.571 0.251 2e-44
Q9XYP8 917 Gamma-tubulin complex com no no 0.551 0.369 0.263 6e-30
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 Back     alignment and function desciption
 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/597 (39%), Positives = 362/597 (60%), Gaps = 31/597 (5%)

Query: 6   PSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSAL 65
           P  P W  ERP L G F            S  ++   + IG      QE  V++DLL  L
Sbjct: 175 PVFPAWVYERPTLAGDF---------LIGSGLSSDTVLPIGTLPLASQESAVVEDLLYVL 225

Query: 66  VGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFV 125
           VG++GRYI+ +                TF VD ++DL+++E+  RI P+  S+    +F+
Sbjct: 226 VGVDGRYITAQPLAGR--------QNRTFLVDPNLDLSIRELVNRILPVAASYSTVTRFI 277

Query: 126 ESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQA 185
           E +S F+ G VNHA AA++R L+ +Y  +V QLE   R G LS+Q LWFY QP + ++  
Sbjct: 278 EEKSSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLHRQGLLSLQKLWFYIQPAMRTIDI 337

Query: 186 VSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYE 245
           ++++          G + L+LL  ++    GD+  + L   +T+ AS  Y  ILE+W+Y 
Sbjct: 338 LASLATSVDKGECVGGSTLSLLHDRSFNYTGDSQAQELCLYLTKAASAPYFEILEKWIYR 397

Query: 246 GVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYS-LKDGIPSFLANIAGKILTTGKY 304
           G+I DPY EF + E+  L KE + +DY+ KYW QRY+ L   IPSFL  +AGKIL+TGKY
Sbjct: 398 GIIHDPYSEFMV-EEHELRKEKIQEDYNDKYWDQRYTVLPQQIPSFLQKVAGKILSTGKY 456

Query: 305 LNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLR 364
           LNV+RECGH    P ++  +++       Y+E ++ A+ +AS  LL+ + E  +L+  LR
Sbjct: 457 LNVVRECGHDVTCPVAK--EIIYTLKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

Query: 365 SIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLT 424
           SIKRY L+DQGDF VHFMD+  EEL K +++I + +L++LL++ALR + A  DP  +DL 
Sbjct: 515 SIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLK 574

Query: 425 CSVERSSLLKRMATLKGVEIK-----TSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVI 479
             +    L+ ++  +  +E K     T +D  +L    +++GLE FS  Y V+WPLS++I
Sbjct: 575 IELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLSGLEAFSFDYMVKWPLSLII 630

Query: 480 SRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFI 538
           +RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+     S    + +  L + ML F+
Sbjct: 631 NRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFV 690

Query: 539 NSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKM 595
            ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH  FLD CL++C+L  P+LLK+
Sbjct: 691 QNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTSFLDNCLKDCMLTNPELLKV 747
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Back     alignment and function description
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 Back     alignment and function description
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1 Back     alignment and function description
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 Back     alignment and function description
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1 Back     alignment and function description
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2 Back     alignment and function description
>sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
224112407711 tubulin gamma complex-associated protein 0.926 0.801 0.794 0.0
296087642702 unnamed protein product [Vitis vinifera] 0.926 0.811 0.833 0.0
359488832681 PREDICTED: gamma-tubulin complex compone 0.926 0.837 0.833 0.0
449461078707 PREDICTED: spindle pole body component 9 0.925 0.804 0.805 0.0
30686344679 Spc97 / Spc98 family of spindle pole bod 0.941 0.852 0.766 0.0
18418288678 Spc97 / Spc98 family of spindle pole bod 0.941 0.853 0.767 0.0
255578011713 gamma-tubulin complex component, putativ 0.944 0.814 0.752 0.0
297807763678 hypothetical protein ARALYDRAFT_488606 [ 0.941 0.853 0.760 0.0
9755764683 spindle pole body protein-like [Arabidop 0.941 0.847 0.761 0.0
357513163672 Gamma-tubulin complex component [Medicag 0.868 0.794 0.778 0.0
>gi|224112407|ref|XP_002316177.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222865217|gb|EEF02348.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/598 (79%), Positives = 524/598 (87%), Gaps = 28/598 (4%)

Query: 4   SYPSTPRWNIERPFLTGRFHQETKAASRFADS-------FSNNGAEMAIGCYDAGVQELL 56
           S PSTPRWNI+RPFLTGRFHQETK  SR AD+        S++G E  IG Y+A VQEL+
Sbjct: 10  SCPSTPRWNIDRPFLTGRFHQETKGTSRLADTKGFSMDLSSSHGLERPIGYYNAAVQELI 69

Query: 57  VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCE 116
           VIDDLLSA+VGIEGRYISI+R    V G + +   ++FQVDASMDLA+QE+AKR+FPLCE
Sbjct: 70  VIDDLLSAMVGIEGRYISIRR----VRGKEDH---ISFQVDASMDLAIQELAKRMFPLCE 122

Query: 117 SFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYC 176
           S++L  QFVESRSQFKNGLVNHAFAA+L+ALL+DY+AMVAQLEHQFRLGRLSIQGLWFYC
Sbjct: 123 SYLLIDQFVESRSQFKNGLVNHAFAAALKALLVDYQAMVAQLEHQFRLGRLSIQGLWFYC 182

Query: 177 QPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYL 236
           QPM+GSMQA+S VI KASANNFTGS+VLNLLQSQAKAMAGDN VRSLLEKMTQCASNAYL
Sbjct: 183 QPMMGSMQALSIVIQKASANNFTGSSVLNLLQSQAKAMAGDNAVRSLLEKMTQCASNAYL 242

Query: 237 GILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAG 296
            ILERWVYEGVIDDPYGEFFIAE+KSL KESLTQDYDAKYWRQRYSLK+GIPSFLANIAG
Sbjct: 243 SILERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWRQRYSLKEGIPSFLANIAG 302

Query: 297 KILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKER 356
            ILTTGKYLNVMRECGH+ QVP SEN KL  FGSNHHYLEC+K AY+FASGELLNLIKE+
Sbjct: 303 TILTTGKYLNVMRECGHNVQVPASENYKLTIFGSNHHYLECIKAAYDFASGELLNLIKEK 362

Query: 357 YDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAA 416
           YDLMGKLRSIK YLLLDQGDFLVHFMDIAR+EL K+ DEI+VEKLQSLLD+ALR+TAAA 
Sbjct: 363 YDLMGKLRSIKHYLLLDQGDFLVHFMDIARDELTKKFDEISVEKLQSLLDLALRTTAAAV 422

Query: 417 DPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLS 476
           DPCHEDLTC VERSSLLKR++TLK +E++T SD   L +P++ITGLETFSLSYKV+WPLS
Sbjct: 423 DPCHEDLTCCVERSSLLKRLSTLKDLEVRTVSDGNALAEPLNITGLETFSLSYKVEWPLS 482

Query: 477 IVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLK 536
           IVISRKAL KYQ++FR LF CKHV+RQLCGAWQVHQG RA N  GTAISRSSL+CRSMLK
Sbjct: 483 IVISRKALAKYQLIFRFLFRCKHVDRQLCGAWQVHQGVRALNMRGTAISRSSLICRSMLK 542

Query: 537 FINSLLHYLTFE--------------VLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDK 580
           FINSLLHYLTFE              VLEPNWHVMHNRLQTAKSIDEVIQ+HD FLDK
Sbjct: 543 FINSLLHYLTFEACLLYCARHKSFELVLEPNWHVMHNRLQTAKSIDEVIQYHDLFLDK 600

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087642|emb|CBI34898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359488832|ref|XP_002273947.2| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461078|ref|XP_004148270.1| PREDICTED: spindle pole body component 97-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30686344|ref|NP_850838.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332005039|gb|AED92422.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418288|ref|NP_568346.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|13430652|gb|AAK25948.1|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi|14532826|gb|AAK64095.1| putative spindle pole body protein [Arabidopsis thaliana] gi|332005040|gb|AED92423.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255578011|ref|XP_002529877.1| gamma-tubulin complex component, putative [Ricinus communis] gi|223530653|gb|EEF32527.1| gamma-tubulin complex component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297807763|ref|XP_002871765.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] gi|297317602|gb|EFH48024.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9755764|emb|CAC01736.1| spindle pole body protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357513163|ref|XP_003626870.1| Gamma-tubulin complex component [Medicago truncatula] gi|355520892|gb|AET01346.1| Gamma-tubulin complex component [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
TAIR|locus:2178930679 AT5G17410 [Arabidopsis thalian 0.941 0.852 0.774 8.6e-246
UNIPROTKB|F1SCV1 906 TUBGCP2 "Uncharacterized prote 0.878 0.596 0.412 1.5e-125
RGD|1309597 905 Tubgcp2 "tubulin, gamma comple 0.915 0.622 0.400 5e-125
UNIPROTKB|A5D7P5 905 TUBGCP2 "Uncharacterized prote 0.915 0.622 0.398 5e-125
MGI|MGI:1921487 905 Tubgcp2 "tubulin, gamma comple 0.915 0.622 0.396 1.3e-124
UNIPROTKB|Q5ZKY5 895 TUBGCP2 "Uncharacterized prote 0.878 0.603 0.402 2.7e-124
UNIPROTKB|Q9BSJ2 902 TUBGCP2 "Gamma-tubulin complex 0.881 0.600 0.404 2.7e-124
UNIPROTKB|E1BZL5 906 TUBGCP2 "Uncharacterized prote 0.878 0.596 0.401 2.4e-123
UNIPROTKB|E1C2Y1 906 TUBGCP2 "Uncharacterized prote 0.878 0.596 0.401 2.4e-123
ZFIN|ZDB-GENE-031118-150 882 tubgcp2 "tubulin, gamma comple 0.879 0.613 0.405 4e-121
TAIR|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2368 (838.6 bits), Expect = 8.6e-246, P = 8.6e-246
 Identities = 464/599 (77%), Positives = 523/599 (87%)

Query:     3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADS--F-----SNNGAEMAIGCYDAGVQEL 55
             +S P+TPRWN +RPFLTGRFHQET+A+S+FADS  F     S++G E AIGCYD  VQEL
Sbjct:     7 ISCPTTPRWNQDRPFLTGRFHQETRASSKFADSKRFTLDSSSSSGVEQAIGCYDTPVQEL 66

Query:    56 LVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLC 115
             +VIDDLLSALVGIEGRYISIKR     HG +  DS + FQVD SMDLALQE+AKRIFPLC
Sbjct:    67 IVIDDLLSALVGIEGRYISIKR----FHGKE--DS-IAFQVDPSMDLALQELAKRIFPLC 119

Query:   116 ESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFY 175
             E ++L  QFVES SQFKNGLVNHAFAA+LRALLLDY+AMVAQLEHQFRLGRLSIQGLWFY
Sbjct:   120 EYYLLIDQFVESSSQFKNGLVNHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQGLWFY 179

Query:   176 CQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAY 235
             CQPM+GSM+A++AVI +AS   F GS VLNLLQSQAKAMAGDN+VRSLLEKMT+CASNAY
Sbjct:   180 CQPMMGSMRALAAVIQQASTKQFVGSGVLNLLQSQAKAMAGDNSVRSLLEKMTECASNAY 239

Query:   236 LGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIA 295
             L ILERWVYEG+IDDPYGEFFIAE++SL KESL+QD  AKYW QRYSLKD IP FLANIA
Sbjct:   240 LSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDSTAKYWSQRYSLKDTIPGFLANIA 299

Query:   296 GKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKE 355
               ILTTGKYLNVMRECGH+ QVP SE SKL  FGSNHHYLEC+K A+EFAS EL+NLIK+
Sbjct:   300 ATILTTGKYLNVMRECGHNVQVPISERSKLTIFGSNHHYLECIKAAHEFASIELVNLIKD 359

Query:   356 RYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAA 415
             +YDL+G+LRSIK YLLLDQGDFLVHFMDIAREEL K++ EI+VEKLQSLLD+ALR+TAAA
Sbjct:   360 KYDLVGRLRSIKHYLLLDQGDFLVHFMDIAREELNKKVHEISVEKLQSLLDLALRTTAAA 419

Query:   416 ADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPL 475
             ADP HEDLTC V+R+SLL    T  G+   T S+S+  E P+SITGLETFSLSYKVQWPL
Sbjct:   420 ADPRHEDLTCCVDRASLL----TTLGMHKDTDSNSI--EDPMSITGLETFSLSYKVQWPL 473

Query:   476 SIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSML 535
             SIVIS+KAL+KYQ++FR LFHCKHVERQLCGAWQ+HQG R+ N+ GTAI RSSLLCRSML
Sbjct:   474 SIVISKKALSKYQLIFRFLFHCKHVERQLCGAWQIHQGIRSMNSKGTAILRSSLLCRSML 533

Query:   536 KFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 594
             KFI+SLLHYLTFEVLEPNWHVMH+RLQ+ +S+DEVIQHHDFFLDKCLR CLL LPD+LK
Sbjct:   534 KFISSLLHYLTFEVLEPNWHVMHDRLQSTRSVDEVIQHHDFFLDKCLRGCLLLLPDVLK 592
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005815 "microtubule organizing center" evidence=IEA
UNIPROTKB|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7P5 TUBGCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Y1 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 1e-136
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  408 bits (1050), Expect = e-136
 Identities = 177/547 (32%), Positives = 271/547 (49%), Gaps = 39/547 (7%)

Query: 60  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 119
           DLL AL+G+E  Y              +    +   +   +  +L+ +  RI  L   + 
Sbjct: 1   DLLFALLGLESLYFRYD--------KSSESFKIAPNISGLLSPSLRSLLNRILELGTLYR 52

Query: 120 LTGQFVE--SRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR-LGRLSIQGLWFYC 176
              +F+E  S S    G V  A AA+LR +L +Y  +VAQLE +    G L++  L    
Sbjct: 53  RLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLSNGTLTLLQLLAEL 112

Query: 177 QPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYL 236
           QP +  ++ ++ ++ +  + +  G  +L+ L  +  +  GD  +R LL ++   AS  YL
Sbjct: 113 QPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIASQTGDPDLRELLLRLLNAASQPYL 172

Query: 237 GILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFL-ANI 294
            +L RW+  G +DDPYGEFFI E++S   E +  D   +YW +RY+L +D +PSFL   +
Sbjct: 173 QMLSRWLLHGELDDPYGEFFIKENES---EEVLSDDSDEYWEERYTLREDMLPSFLPKEL 229

Query: 295 AGKILTTGKYLNVMRECGHSAQVP------------TSENSKLLSFGSNHHYLECVKVAY 342
           A KIL  GK LN +REC  S  +                  KL S          +  AY
Sbjct: 230 ARKILEIGKSLNFLRECCKSHPLAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAY 289

Query: 343 EFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQ 402
             AS  LL+L+ E YDL+G L+++K Y LL +GDF+  F++   +EL K  + ++   LQ
Sbjct: 290 LEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDELDKPANSLSDHALQ 349

Query: 403 SLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGL 462
           SLL  ALRS+++  DP   DL     + S          V     S          ++GL
Sbjct: 350 SLLQEALRSSSSDDDPASSDLDELETKKSDSSETLNRLDVSSLELSS--------GLSGL 401

Query: 463 ETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN---A 519
           +  +L YKV WPLS++++ +AL KYQ +FR L   K  E  L   W+     R       
Sbjct: 402 DALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRR 461

Query: 520 SGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD 579
           +   + +  LL   ML F+NSL +Y+  +V+E NW  +  +LQ AK +DE+I  H+ +LD
Sbjct: 462 NEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAKDLDELIAAHEDYLD 521

Query: 580 KCLRECL 586
             L  C 
Sbjct: 522 SILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 615
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
KOG2000 879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 99.95
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-113  Score=890.84  Aligned_cols=604  Identities=44%  Similarity=0.746  Sum_probs=540.9

Q ss_pred             CCCCCCCCCcccCCCc-CCc-cccchhhh-----hh-hccc-cccccccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 007163            3 MSYPSTPRWNIERPFL-TGR-FHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI   73 (615)
Q Consensus         3 ~~~p~~p~w~~~~~~~-~~~-~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dlL~~L~G~~g~~i   73 (615)
                      ++.|..|.|...||++ ||. +++.....     +. ...+ ..+.....+++.+|.+.||..+++||++||.|++|.|+
T Consensus        34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV  113 (734)
T KOG2001|consen   34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV  113 (734)
T ss_pred             cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence            5677889999999999 773 33332211     11 1111 23556677899999999999999999999999999999


Q ss_pred             eeecccccCCCCCC---CCCcceeEecCCCCHHHHHHHHHHHhhHhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 007163           74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD  150 (615)
Q Consensus        74 ~~~~~~~~~~~~~~---~~~~~~f~v~~~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~~~g~v~~A~a~al~~~L~~  150 (615)
                      +.+.    ..+...   ...+..|.|.|+.+-++++++++++|+|.+|..+++||++.+.++.|.|++|+|+|+++++.+
T Consensus       114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d  189 (734)
T KOG2001|consen  114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD  189 (734)
T ss_pred             ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence            9865    222111   013578999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007163          151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC  230 (615)
Q Consensus       151 y~~~v~~lE~~~~~~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~  230 (615)
                      |+..|.++|++.+.+.+|+++||++++|++..++.++..+..+.++.++||.+|+.|++++..+.||+..+.++.++++.
T Consensus       190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~  269 (734)
T KOG2001|consen  190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN  269 (734)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHhcceecCCCCcceEeeCCcccccccCcchhhhhhcccccc-cCCCChhHHHHHHHHHhhhhHHHHHH
Q 007163          231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMR  309 (615)
Q Consensus       231 ~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~~~~~~~~~~W~~~y~i-~~~vP~Fl~~~a~~Il~~GK~l~~lr  309 (615)
                      +++||++|+++|++.|.++|||+||||.++ ..+++.+++|+.++||++||+| +|.+|.|+.+.|+|||.||||+||+|
T Consensus       270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvR  348 (734)
T KOG2001|consen  270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVR  348 (734)
T ss_pred             hcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999999999999999 7778899999999999999999 78999999999999999999999999


Q ss_pred             hhCCCCCccCcccccccccC--CchhhHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhHhccCcchHHHHHHHHHH
Q 007163          310 ECGHSAQVPTSENSKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIARE  387 (615)
Q Consensus       310 ~~~~~~~~p~~e~~~~~~f~--~~~~~~~~I~~~~~~as~~ll~~l~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~  387 (615)
                      +||+.+++|.+.+. +..+.  .+..+.+.|+++|..|+..++++++++++|.+||+++|+||||++|||+.+|+|.+.+
T Consensus       349 eC~~~v~~p~~~n~-~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~e  427 (734)
T KOG2001|consen  349 ECGKIVTIPQSSNE-INDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEE  427 (734)
T ss_pred             HhCccCCCCcchhh-hccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            99999998876532 22222  2578999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCccccHHHHHHHHHHHHH-hhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCC---CCCceee
Q 007163          388 ELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLE  463 (615)
Q Consensus       388 ~L~~~~~~i~~~~L~~ll~~al~-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~---~~~~~~~  463 (615)
                      +|.|+.+.+++.+|+++|+.|+| .|.+.+||++++++|++++.++..++..+..++....+.+ ...+|   .+++|+|
T Consensus       428 EL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~an-s~~dP~~~l~lsGlE  506 (734)
T KOG2001|consen  428 ELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEESAN-SQADPLEHLDLSGLE  506 (734)
T ss_pred             HHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccccc-cccCcchhccccchh
Confidence            99999999999999999999999 7888899999999999999999999988876664332221 12333   6789999


Q ss_pred             EEEeeeecCCcceEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc-hhHHhHHHHHHHHHHHHHHHH
Q 007163          464 TFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLL  542 (615)
Q Consensus       464 ~l~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~-~~~~~~~~lr~~m~~Fv~~l~  542 (615)
                      +++|+|+||||||+||++++|.+||+|||++|.||||+++||.+|+.++..|..+..+ ++.++++.||++|++||+++.
T Consensus       507 ~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~  586 (734)
T KOG2001|consen  507 AFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIE  586 (734)
T ss_pred             hheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888766543 567889999999999999999


Q ss_pred             HHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCch-HHHHH---HHHHHHHHHHHHHHHHHh
Q 007163          543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKM---VMDAGLEYVRQDRRMWKM  613 (615)
Q Consensus       543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~-~ll~~---i~~~c~~F~~~~~~~~~~  613 (615)
                      +|++.+||||+|+.|++.+++++++|+++..|+.|||.|+++|||+.+ .+++.   +.++|++||+++|.++..
T Consensus       587 ~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~  661 (734)
T KOG2001|consen  587 YYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQS  661 (734)
T ss_pred             HHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999998 55554   566999999999998754

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 2e-18
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 114/505 (22%), Positives = 203/505 (40%), Gaps = 63/505 (12%)
Query: 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 190
           +G+   AF   L ++L  Y   +  LE +F LG   LSI  + ++         +V  V+
Sbjct: 82  HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140
Query: 191 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250
            +  +    G  +L  +   +    G   VRS LEK+           L  W+  G++ D
Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198
Query: 251 PYGEFFIAEDKSLLKESLTQDYD----------AKYWRQ------------------RYS 282
            + EFFI +  S    S   + D           K  R+                  ++S
Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258
Query: 283 LK-DGIPSFLA-NIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 335
           L+ + +PS++   +A KIL  G+ + +      +  V  +    +L     +F +  H L
Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314
Query: 336 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 383
                       + V       +  L  L+ E  DL+G+L+ IK + LL +G+    F+D
Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374
Query: 384 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 443
            A+  L      +T   +      +        D     L  ++E      + AT     
Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432
Query: 444 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 503
              S ++   E P S  G     LSYKVQWPL I+ +   L KY +VF+ L   + V+ +
Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490
Query: 504 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 562
           L   W +    +   ++ T   +  L  R+ + F +++L +YL  +VLE  +  + +++ 
Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548
Query: 563 TAKSIDEVIQHHDFFLDKCLRECLL 587
           + +  + +   HD FL   L +  +
Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFI 573

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 2e-97
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  311 bits (797), Expect = 2e-97
 Identities = 117/604 (19%), Positives = 217/604 (35%), Gaps = 82/604 (13%)

Query: 57  VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVD---ASMDLALQEMAKRIFP 113
           +I +LL AL G  G                T++     QV      +  +   +  R+  
Sbjct: 1   MIHELLLALSGYPGSIF-------------TWNKRSGLQVSQDFPFLHPSETSVLNRLCR 47

Query: 114 LCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDYEAMVAQL 158
           L   ++   +F+E  +                  +G+   AF   L ++L  Y   +  L
Sbjct: 48  LGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDL 107

Query: 159 EHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGD 217
           E +F     LSI  + ++         +V  V+ +  +    G  +L  +   +    G 
Sbjct: 108 EQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGL 165

Query: 218 NTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAK-- 275
             VRS LEK+           L  W+  G++ D + EFFI +  S    S   + D +  
Sbjct: 166 PPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225

Query: 276 --------------------------YWRQRYSL-KDGIPSFL-ANIAGKILTTGKYLNV 307
                                        +++SL  + +PS++   +A KIL  G+ + +
Sbjct: 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQM 285

Query: 308 MRECGHSAQ-------------VPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIK 354
                 +                      K     S   + + V       +  L  L+ 
Sbjct: 286 FENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMV 345

Query: 355 ERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAA 414
           E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      +      
Sbjct: 346 EESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLL 405

Query: 415 AADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 474
             D     L  ++E      + AT    + +         +    +G     LSYKVQWP
Sbjct: 406 DDDNLLPLLHLTIEYHGKEHKDAT----QAREGPSRETSPREAPASGWAALGLSYKVQWP 461

Query: 475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSM 534
           L I+ +   L KY +VF+ L   + V+ +L   W +    +    S    +    L   M
Sbjct: 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIKWRLRNHM 520

Query: 535 LKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 594
              +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +  
Sbjct: 521 AFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFH 580

Query: 595 MVMD 598
            + +
Sbjct: 581 CLNE 584
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query615
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 100.0
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-85  Score=745.17  Aligned_cols=533  Identities=22%  Similarity=0.360  Sum_probs=437.1

Q ss_pred             HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceeEecC---CCCHHHHHHHHHHHhhHhHHHHHHHHhhhccCC--
Q 007163           57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF--  131 (615)
Q Consensus        57 lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~--  131 (615)
                      ||+|||+||+|++|.||+..+             ..+|.|++   .+++|+++++++++++|.+|+.|++|++..+..  
T Consensus         1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~   67 (677)
T 3rip_A            1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ   67 (677)
T ss_dssp             CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            689999999999999999876             14799988   567999999999999999999999999964321  


Q ss_pred             -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 007163          132 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN  197 (615)
Q Consensus       132 -------------~~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~  197 (615)
                                   ..|+|++|||++|+++|++|+..|+++|+++.. +.+||+.++.+++|+...|+.|++|+.++..+.
T Consensus        68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~  147 (677)
T 3rip_A           68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK  147 (677)
T ss_dssp             -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                         169999999999999999999999999999964 579999999999999999999999999987667


Q ss_pred             CchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCccccccc---------
Q 007163          198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESL---------  268 (615)
Q Consensus       198 ~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~~---------  268 (615)
                      .+||++|+.||+.+.  +|||.+++++.+|+.+|++||+++|..||++|+|.|||+||||++++...++..         
T Consensus       148 ~~G~~lL~~L~~~~~--~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~  225 (677)
T 3rip_A          148 IHGCQILETVYKHSC--GGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL  225 (677)
T ss_dssp             CCTHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred             CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence            899999999999974  999999999999999999999999999999999999999999999865332100         


Q ss_pred             C------------------c-chhhhhhcccccc-cCCCChhHHH-HHHHHHhhhhHHHHHHhhCCCCCc-----cCccc
Q 007163          269 T------------------Q-DYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQV-----PTSEN  322 (615)
Q Consensus       269 ~------------------~-~~~~~~W~~~y~i-~~~vP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~~~-----p~~e~  322 (615)
                      .                  . +....+|..+|+| .+++|.|+++ +|+|||.|||++|+||+|+.....     +..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~  305 (677)
T 3rip_A          226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED  305 (677)
T ss_dssp             ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred             ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence            0                  0 0012479999999 6889999987 999999999999999998754210     00000


Q ss_pred             ------ccccccC--CchhhHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhHhccCcchHHHHHHHHHHHHhccCc
Q 007163          323 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD  394 (615)
Q Consensus       323 ------~~~~~f~--~~~~~~~~I~~~~~~as~~ll~~l~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~  394 (615)
                            ..+.+..  +...+...|+++|..||+.|+++++++++|.+||+++|+||||++|||+.+|++.++++|.++..
T Consensus       306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~  385 (677)
T 3rip_A          306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT  385 (677)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence                  0011110  12468889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCc
Q 007163          395 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP  474 (615)
Q Consensus       395 ~i~~~~L~~ll~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~~~l~L~Y~v~wP  474 (615)
                      +++..+|+..|+.|++.+....+++.+.+.+.+........ ....+.+  .. .........+..|||+|+|+|+||||
T Consensus       386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~d~l~L~Y~v~~P  461 (677)
T 3rip_A          386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQARE--GP-SRETSPREAPASGWAALGLSYKVQWP  461 (677)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred             ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-ccccccc--cc-ccccccccCCccchheEEEEEeCCCh
Confidence            99999999999999998776666676777776654332100 0000000  00 00011223467899999999999999


Q ss_pred             ceEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcchhHHhHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 007163          475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW  554 (615)
Q Consensus       475 L~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w  554 (615)
                      |++|||+++|.+|++||+|||++||+++.|+++|..++..|........+++ +.+|++|+|||+++++|++++||+++|
T Consensus       462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w  540 (677)
T 3rip_A          462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF  540 (677)
T ss_dssp             GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988765543322233444 899999999999999999999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHH---HHHHHHHHHHHHHHHHH
Q 007163          555 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDL---LKMVMDAGLEYVRQDRR  609 (615)
Q Consensus       555 ~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~l---l~~i~~~c~~F~~~~~~  609 (615)
                      .+|++++++++|+|+++++|++||++|+++|||+++++   +.+|+++|++||..+++
T Consensus       541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~  598 (677)
T 3rip_A          541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQ  598 (677)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999997755   45677899999999876

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00