Citrus Sinensis ID: 007169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 615 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LKS5 | 700 | Long chain acyl-CoA synth | yes | no | 0.982 | 0.862 | 0.738 | 0.0 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.969 | 0.850 | 0.797 | 0.0 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.830 | 0.766 | 0.434 | 1e-126 | |
| Q9JID6 | 698 | Long-chain-fatty-acid--Co | yes | no | 0.858 | 0.756 | 0.426 | 1e-123 | |
| P33124 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.809 | 0.714 | 0.458 | 1e-121 | |
| Q91WC3 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.809 | 0.714 | 0.456 | 1e-120 | |
| Q9UKU0 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.801 | 0.707 | 0.464 | 1e-120 | |
| P41216 | 699 | Long-chain-fatty-acid--Co | no | no | 0.855 | 0.752 | 0.431 | 1e-120 | |
| P33121 | 698 | Long-chain-fatty-acid--Co | no | no | 0.855 | 0.753 | 0.420 | 1e-119 | |
| P18163 | 699 | Long-chain-fatty-acid--Co | no | no | 0.855 | 0.752 | 0.422 | 1e-118 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/608 (73%), Positives = 529/608 (87%), Gaps = 4/608 (0%)
Query: 3 STAAQRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNV 58
++ QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNV
Sbjct: 4 ASPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNV 63
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGE
Sbjct: 64 YRSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGE 123
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
A + R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK
Sbjct: 124 AASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVK 183
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
++VNHA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y
Sbjct: 184 FVVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQK 243
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
LLSQGRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSD
Sbjct: 244 LLSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSD 303
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY
Sbjct: 304 VYISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIY 363
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
GITSAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGS
Sbjct: 364 DGITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGS 423
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVD
Sbjct: 424 GASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVD 483
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRL
Sbjct: 484 VPEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRL 543
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598
KIIDRKKNIFKLAQGEYIA EKIENVY KC+FV QCF++GDSFNS+LVAIVSVD + +K
Sbjct: 544 KIIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKD 603
Query: 599 WAASEGIQ 606
WAASEGI+
Sbjct: 604 WAASEGIK 611
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 976 bits (2522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/597 (79%), Positives = 546/597 (91%), Gaps = 1/597 (0%)
Query: 10 LKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV 69
+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS++SP KLV
Sbjct: 16 INAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAKSPFKLV 74
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
SRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTART +GSG
Sbjct: 75 SRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSG 134
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVNHA+VQA+
Sbjct: 135 LVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAI 194
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+QGRSN Q
Sbjct: 195 FCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQR 254
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYISYLPLAHI
Sbjct: 255 FFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISYLPLAHI 314
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
YERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI +AV+TSG
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
GL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASPLSP+V++
Sbjct: 375 GLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVME 434
Query: 430 FLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEMNYTS DQ
Sbjct: 435 FLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQ 494
Query: 490 PCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
P PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIIDRKKNIFK
Sbjct: 495 PHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFK 554
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ 606
LAQGEYIA EKIENVYAKCKFVGQCF+YGDSFNS+LVA+VSVD D LK+WAASEGI+
Sbjct: 555 LAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAASEGIK 611
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/525 (43%), Positives = 327/525 (62%), Gaps = 14/525 (2%)
Query: 86 VRAVDTFRDYKYLGTR-VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V ++ D +LG R + DG G+YKW++Y +A +GS L+ G++KG IG++
Sbjct: 59 VYRINKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIF 118
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS 204
+NRPEW++ D A +S + V LY TLG +A++Y+VNH+ + + C + + +LS
Sbjct: 119 SINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILSMPG 178
Query: 205 EVPTVRLIVVIGGIDDQIPSLPI-----TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
T++ IV D +P + V++ S+ G N P P+D+
Sbjct: 179 T--TIKTIVSY----DPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPEDLC 232
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHIYERANQVMT 318
T+ YTSG+TG PKG +L+H N+++ VAGA P DV++SYLPLAH +ERA +
Sbjct: 233 TLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGVIPEDVHMSYLPLAHSFERAVVSLM 292
Query: 319 VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
Y G +GF+ G +L +D+ LRPT C PR++ R++ + V L++ LFN
Sbjct: 293 CYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNW 352
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
N+K+ A+ G +P+WD+LVF+K KD+LGGRV+F+ SG++PL P + +FL+ CF
Sbjct: 353 GLNSKQSALRLGST-TPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCP 411
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
V GYG++E S DN GHVG P +ACE+KL+DVPEMNY S D+PCPRGE+C+
Sbjct: 412 VVSGYGLSENVGGASVAYPEDNNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCI 471
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
RG +FKGY+KD +TKE + EDGWFHTGDIG W G L IIDRKKNIFKL+QGEY+AA
Sbjct: 472 RGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDRKKNIFKLSQGEYVAA 531
Query: 559 EKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
E +E+V+ + F Q FVYGDS NS LV +V D + ++ AS+
Sbjct: 532 EYLESVFVRSPFASQVFVYGDSLNSFLVGVVVPDFEVVQKLFASK 576
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Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/549 (42%), Positives = 340/549 (61%), Gaps = 21/549 (3%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R + D Y+W++Y + +GS L+ G
Sbjct: 86 YDDVRTLYDVFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVEDLSECIGSALLQKG 141
Query: 135 I--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+I++ AC AYS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 142 FQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 201
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IVV+ ++ GV++++ + GR+N +
Sbjct: 202 KPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRK 261
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+PDD+A IC+TSGTTG PKGA+++H N+++ + T+ SD++IS+LP
Sbjct: 262 PKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFLP 321
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH+YE+ Q + + G +GF+QGD LMDD+ AL+PT+F VPRL NR++ I +
Sbjct: 322 LAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQA 381
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
T+ ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 382 NTT--VKRWLLDFASKRKEAELRSGIIRNNS-VWDKLIFHKIQSSLGGKVRLMVTGAAPV 438
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
S VL FL+ G + EGYG TE + S GD +GHVG+P IKLVDV EMN
Sbjct: 439 SATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMN 498
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y + GE+CV+GP +FKGY KD +T E +D+DGW HTGDIG W+P G LKIIDR
Sbjct: 499 YMAA---MGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDR 555
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D ++L +WA
Sbjct: 556 KKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKR 615
Query: 604 GIQVTFSWL 612
G + +F L
Sbjct: 616 GFEGSFEEL 624
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Cavia porcellus (taxid: 10141) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/517 (45%), Positives = 321/517 (62%), Gaps = 19/517 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AG--ATLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G +++ P+ DV+ SYLPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQVTFSWLSVS 615
DS + LV IV D + + WA +GI+ + L S
Sbjct: 591 DSLKAFLVGIVVPDPEVMPCWAQKKGIEGNYQELCKS 627
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/517 (45%), Positives = 318/517 (61%), Gaps = 19/517 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ +G++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP ++ YI+N A + V P LL + E P ++L++++ +D +
Sbjct: 178 YDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + GR N PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY + C GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWT----CKGEGEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQVTFSWLSVS 615
DS + LV IV D + + +WA +GI+ T+ L +
Sbjct: 591 DSLKAFLVGIVVPDPEVMPSWAQKKGIEGTYQELCMK 627
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/512 (46%), Positives = 318/512 (62%), Gaps = 19/512 (3%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H + IG++ NRPEW+IV+ AC YS + VPL
Sbjct: 118 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP A++YI+N A + V PQ LL + E P ++LI+++ ++ +
Sbjct: 178 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N Q PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L PT+F VPRL NR+Y I S T L+ L A K+ + SG +N S +WD
Sbjct: 358 LCPTIFPVVPRLLNRMYDKIFSQANTP--LKRWLLEFAAKRKQAEVRSGIIRNDS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVDV E+NY + C GEICVRGP +FKGY KD +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDVEELNYWA----CKGEGEICVRGPNVFKGYLKDPDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPAGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSQPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQVTFS 610
DS + LV IV D + + +WA GI+ T++
Sbjct: 591 DSLKAFLVGIVVPDPEVMPSWAQKRGIEGTYA 622
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 238/551 (43%), Positives = 334/551 (60%), Gaps = 25/551 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R Y+W++Y E +GSGLI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNNGPCLGSR----KPNQPYEWISYKEVAELAECIGSGLIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IGL+ NRPEW+IV+ C +YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ + GV+I++ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPS--DVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N+I +G T+ F S DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS L+ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--LKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P +KLVDV E
Sbjct: 440 SATVLTFLRTALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYVKLVDVEE 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYLASKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+A+V D ++L +WA
Sbjct: 555 DRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQ 614
Query: 602 SEGIQVTFSWL 612
G+Q +F L
Sbjct: 615 KRGLQGSFEEL 625
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/547 (42%), Positives = 331/547 (60%), Gaps = 21/547 (3%)
Query: 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136
++ T ++ F R + + LG+R + D Y+W++Y + +GS LI G
Sbjct: 88 DVTTLYEGFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVAELSECIGSALIQKGFK 143
Query: 137 KG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC-VP 193
IG++ NRPEW+I++ C AYS + VPLYDTLG +A+ YIVN A + VF P
Sbjct: 144 TAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKP 203
Query: 194 QTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
+ LL + +P +++IVV+ ++ GV++ + + GR+N +
Sbjct: 204 EKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRKPK 263
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY----PSDVYISYLPLA 307
PP P+D+A IC+TSGTTG PKGA+++H N+++ + T+ P D IS+LPLA
Sbjct: 264 PPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLPLA 323
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
H++ER + + + G +GF+QGD LMDD+ L+PTVF VPRL NR++ I T
Sbjct: 324 HMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFGQANT 383
Query: 368 SGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSP 425
+ L+ L + A K+ + SG +N S +WDRL+F+K++ LGGRVR M +GA+P+S
Sbjct: 384 T--LKRWLLDFASKRKEAELRSGIIRNNS-LWDRLIFHKVQSSLGGRVRLMVTGAAPVSA 440
Query: 426 DVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYT 485
VL FL+ G + EGYG TE + GD +GHVG+P IKLVDV EMNY
Sbjct: 441 TVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMNYM 500
Query: 486 SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
+ + GE+CV+GP +F+GY KD +T E +D+DGW HTGDIG W+P G LKIIDRKK
Sbjct: 501 AAEG---EGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKK 557
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGI 605
+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D + L +WA G
Sbjct: 558 HIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF 617
Query: 606 QVTFSWL 612
+ +F L
Sbjct: 618 EGSFEEL 624
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/551 (42%), Positives = 329/551 (59%), Gaps = 25/551 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + D LG+R Y+W++Y + +GS LI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNDGPCLGSR----KPNQPYEWISYKQVAEMAECIGSALIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+ ++ C YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGIFSQNRPEWVTIEQGCFTYSMVVVPLYDTLGTDAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ D+ + GV+I+ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYDNDLVERGQKCGVEIIGLKALEDLGRVNRTK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N++ +G T+ P DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMVTHQNIMNDCSGFIKATESAFIASPEDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--VKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P IKLVDV +
Sbjct: 440 SATVLTFLRAALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYIKLVDVED 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYQAAKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AIV D + L +WA
Sbjct: 555 DRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAIVVPDVEILPSWAQ 614
Query: 602 SEGIQVTFSWL 612
G Q +F L
Sbjct: 615 KRGFQGSFEEL 625
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 615 | ||||||
| 255552335 | 694 | Acyl-CoA synthetase [Ricinus communis] g | 0.985 | 0.873 | 0.833 | 0.0 | |
| 225432604 | 697 | PREDICTED: long chain acyl-CoA synthetas | 0.980 | 0.865 | 0.839 | 0.0 | |
| 356534226 | 696 | PREDICTED: long chain acyl-CoA synthetas | 0.983 | 0.869 | 0.826 | 0.0 | |
| 356574400 | 698 | PREDICTED: long chain acyl-CoA synthetas | 0.983 | 0.866 | 0.825 | 0.0 | |
| 224111218 | 705 | predicted protein [Populus trichocarpa] | 0.973 | 0.849 | 0.816 | 0.0 | |
| 449432710 | 695 | PREDICTED: long chain acyl-CoA synthetas | 0.985 | 0.871 | 0.803 | 0.0 | |
| 357444293 | 697 | Annotation was added to scaffolds in Nov | 0.983 | 0.868 | 0.825 | 0.0 | |
| 357444291 | 713 | Annotation was added to scaffolds in Nov | 0.983 | 0.848 | 0.804 | 0.0 | |
| 147863228 | 703 | hypothetical protein VITISV_002313 [Viti | 0.983 | 0.860 | 0.767 | 0.0 | |
| 296088349 | 633 | unnamed protein product [Vitis vinifera] | 0.983 | 0.955 | 0.767 | 0.0 |
| >gi|255552335|ref|XP_002517212.1| Acyl-CoA synthetase [Ricinus communis] gi|83320525|gb|ABC02881.1| ACS2 [Ricinus communis] gi|223543847|gb|EEF45375.1| Acyl-CoA synthetase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/606 (83%), Positives = 566/606 (93%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MD +AQRR++AIHGHLL A D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVYR
Sbjct: 1 MDMDSAQRRIQAIHGHLLAARDCSPSHLRLNPTAGEFFSEQGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPL+LVSRFPDHP+IGT HDNF R+VDTFRDYKYLGTR+RVDGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLRLVSRFPDHPDIGTLHDNFARSVDTFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL++HGI KGS +GLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK+I
Sbjct: 121 TARTAIGSGLMHHGIPKGSSVGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKFI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FCVPQTL LLS LSE+ +VRLIVV+GG+DDQ+PSLP +TGVQ++TYS LL
Sbjct: 181 VNHADVQAIFCVPQTLTPLLSFLSEISSVRLIVVVGGMDDQMPSLPSSTGVQVVTYSKLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG SNLQPF PPKP+DVATICYTSGTTGTPKGA L+HGNLIA+VAGATL TKFYPSD+Y
Sbjct: 241 SQGHSNLQPFCPPKPEDVATICYTSGTTGTPKGAALTHGNLIANVAGATLATKFYPSDIY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+TVY GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVLTVYYGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
IT+AV+TSGGLRERLFNAAYNAKKQA+L+G++PSPMWDRLVF+KIK KLGGRVRF+ SGA
Sbjct: 361 ITNAVKTSGGLRERLFNAAYNAKKQAILNGRSPSPMWDRLVFDKIKAKLGGRVRFIASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV++FLKICFGGRV+EGYGMTETSC+IS ++EGDNL+GHVGSPN ACEIKLVDVP
Sbjct: 421 SPLSPDVMEFLKICFGGRVSEGYGMTETSCVISAMEEGDNLTGHVGSPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EM+YTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG+W+P GRLKI
Sbjct: 481 EMSYTSDDQPYPRGEICVRGPIVFQGYHKDEAQTRDVIDEDGWLHTGDIGLWLPEGRLKI 540
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKC+F+ QCFVYGDS NSALVAIV+VDQD LKAWA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCRFIAQCFVYGDSLNSALVAIVAVDQDTLKAWA 600
Query: 601 ASEGIQ 606
ASEGI+
Sbjct: 601 ASEGIK 606
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432604|ref|XP_002277936.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Vitis vinifera] gi|297737021|emb|CBI26222.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/605 (83%), Positives = 561/605 (92%), Gaps = 2/605 (0%)
Query: 4 TAAQRRLKAIHGHLLCA--DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRS 61
+A QRRL AI L+ DD S SQL N TAGE+ EQGYSVVLPEKL+TGKWNVYRS
Sbjct: 3 SAPQRRLTAIQTQLIATAGDDRSHSQLLTNQTAGEFVSEQGYSVVLPEKLETGKWNVYRS 62
Query: 62 SRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGT 121
++SPL+LVSRFPDHPEIGT HDNFV +V+TFRDYKYLGTR+RVDGTVGEYKWMTYGEAGT
Sbjct: 63 AQSPLRLVSRFPDHPEIGTLHDNFVHSVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGT 122
Query: 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181
AR+ +GSGLIY+GI KGSC+GLYF+NRPEWLIVDHACSA+S++SVPLYDTLGPDAVKYIV
Sbjct: 123 ARSAIGSGLIYYGIPKGSCVGLYFINRPEWLIVDHACSAFSYVSVPLYDTLGPDAVKYIV 182
Query: 182 NHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
NHA +QA+FCVPQTLNSLLS LSE+P+VRLIVV+GGIDDQ+PSLP TTGV++++YS LL+
Sbjct: 183 NHAVLQAIFCVPQTLNSLLSFLSEIPSVRLIVVVGGIDDQMPSLPSTTGVEVVSYSKLLN 242
Query: 242 QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYI 301
QGRS QPF PPKPDDVATICYTSGTTGTPKGAVLSHGNLIA+VAGATL KFYPSDVYI
Sbjct: 243 QGRSRPQPFCPPKPDDVATICYTSGTTGTPKGAVLSHGNLIANVAGATLSVKFYPSDVYI 302
Query: 302 SYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGI 361
SYLPLAHIYERANQVMT Y GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAGI
Sbjct: 303 SYLPLAHIYERANQVMTAYFGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAGI 362
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
T+AV+TSG LRERLFNAAYNAKK+A+LSGKNPSPMWDRLVFNKIK+KLGGRVRFM SGAS
Sbjct: 363 TNAVKTSGVLRERLFNAAYNAKKRAILSGKNPSPMWDRLVFNKIKEKLGGRVRFMVSGAS 422
Query: 422 PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
PLSPDV++FL+ICFGGR+TEGYGMTETSC+IS +DE DNL+GHVGSPN ACE+KLVDVPE
Sbjct: 423 PLSPDVMEFLRICFGGRITEGYGMTETSCVISSMDESDNLTGHVGSPNPACEVKLVDVPE 482
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNYTSEDQP PRGEICVRGP++F GY+KDE+QT+EVIDEDGW HTGDIG+W+PGGRLKII
Sbjct: 483 MNYTSEDQPYPRGEICVRGPILFLGYHKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII 542
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601
DRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS NS+LVAIVSVD D LKAWAA
Sbjct: 543 DRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSMNSSLVAIVSVDPDVLKAWAA 602
Query: 602 SEGIQ 606
SEGIQ
Sbjct: 603 SEGIQ 607
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534226|ref|XP_003535658.1| PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/606 (82%), Positives = 556/606 (91%), Gaps = 1/606 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVY 59
MD T AAQRRLKAIH HL D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVY
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATADESPSHLRSNPTAGEFFSEQGYSVVLPEKLQTGKWNVY 60
Query: 60 RSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKW+TYGEA
Sbjct: 61 RSVRSPLQLVTKFPNHPEIGTLHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWITYGEA 120
Query: 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKY 179
GTAR+ +GSGLIYHGI KGS IGLYF+NRPEWLIVDHACS+YSF+SVPLYDTLGPDAVKY
Sbjct: 121 GTARSAIGSGLIYHGIEKGSSIGLYFINRPEWLIVDHACSSYSFVSVPLYDTLGPDAVKY 180
Query: 180 IVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
IV+HA+VQ +FCVPQTLN LLS LS++PTVRLIVV+GG+DDQIP +P +TGVQ++TYS L
Sbjct: 181 IVSHAAVQVIFCVPQTLNLLLSYLSDIPTVRLIVVVGGMDDQIPLVPSSTGVQVITYSKL 240
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L+QGRSNLQ F PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T KF PSDV
Sbjct: 241 LNQGRSNLQLFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTRDQKFGPSDV 300
Query: 300 YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359
YISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRIYA
Sbjct: 301 YISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRIYA 360
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSG 419
GI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM SG
Sbjct: 361 GIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMASG 420
Query: 420 ASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDV 479
ASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLVDV
Sbjct: 421 ASPLSPDIMEFLKICFGCRVTEGYGMTESTCIISFIDEGDKLGGHVGSPNLACEIKLVDV 480
Query: 480 PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
PEMNYTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG W+PGGRLK
Sbjct: 481 PEMNYTSDDQPNPRGEICVRGPIVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGRLK 540
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599
IIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS NS+LVA+VSVD D LKAW
Sbjct: 541 IIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVSVDHDNLKAW 600
Query: 600 AASEGI 605
AASEGI
Sbjct: 601 AASEGI 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574400|ref|XP_003555336.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/608 (82%), Positives = 557/608 (91%), Gaps = 3/608 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCAD--DSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWN 57
MD T AAQRRLKAIH HL D S S L N TAGE+ EQGYSVVLPEKL TGKWN
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATATADDSPSHLESNTTAGEFFSEQGYSVVLPEKLQTGKWN 60
Query: 58 VYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 117
VYRS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKWMTYG
Sbjct: 61 VYRSVRSPLQLVTKFPNHPEIGTMHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 120
Query: 118 EAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAV 177
EAGTAR+ +GSGLIY+GI KGS IGLYF+NRPEWLIVDHACSAYSF+SVPLYDTLGPDAV
Sbjct: 121 EAGTARSAIGSGLIYYGIQKGSSIGLYFINRPEWLIVDHACSAYSFVSVPLYDTLGPDAV 180
Query: 178 KYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237
KYIV+HA VQ +FCVP+TLN LLS LS++PTVRLIVV+GG+DDQIPS+P +TGVQ++TYS
Sbjct: 181 KYIVSHAVVQVIFCVPETLNLLLSYLSDIPTVRLIVVVGGMDDQIPSVPSSTGVQVITYS 240
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
LL+QGRSNLQPF PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T+ KF PS
Sbjct: 241 KLLNQGRSNLQPFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTMDEKFGPS 300
Query: 298 DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRI 357
DVYISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRI
Sbjct: 301 DVYISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRI 360
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
YAGIT+AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM
Sbjct: 361 YAGITNAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMA 420
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLV 477
SGASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLV
Sbjct: 421 SGASPLSPDIMEFLKICFGCRVTEGYGMTESTCVISCIDEGDKLGGHVGSPNLACEIKLV 480
Query: 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGR 537
DVPEMNYTS+DQP PRGEICVRGPL+F+GY+KDE QT++VIDEDGW HTGDIG W+PGGR
Sbjct: 481 DVPEMNYTSDDQPNPRGEICVRGPLVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGR 540
Query: 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK 597
LKIIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDS N++LVA+VSVD D LK
Sbjct: 541 LKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNASLVAVVSVDHDNLK 600
Query: 598 AWAASEGI 605
AWAASEGI
Sbjct: 601 AWAASEGI 608
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111218|ref|XP_002315784.1| predicted protein [Populus trichocarpa] gi|222864824|gb|EEF01955.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/601 (81%), Positives = 553/601 (92%), Gaps = 2/601 (0%)
Query: 6 AQRRLKAIHGHLL--CADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSR 63
AQRR+KAIH HL+ A D S QLRHNPTAGE+ EQGYSVVLPEKL TGKWNVYRS+R
Sbjct: 11 AQRRIKAIHSHLITAAAHDDSPPQLRHNPTAGEFFSEQGYSVVLPEKLQTGKWNVYRSAR 70
Query: 64 SPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTAR 123
+PLKLVSRFPDHPEIGT HDNF R+V+TFRDYKYLGTR+RVDGTVG+YKWMT+GEAGTAR
Sbjct: 71 TPLKLVSRFPDHPEIGTLHDNFARSVETFRDYKYLGTRIRVDGTVGDYKWMTFGEAGTAR 130
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
TE+GSGLIYHGI KGS IG+YF+NRPEW+IVDHACSAYS+ISVPLYDTLGPDAVKYIVNH
Sbjct: 131 TEIGSGLIYHGIPKGSTIGIYFINRPEWMIVDHACSAYSYISVPLYDTLGPDAVKYIVNH 190
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
A V A+FCVPQTLN LLS LSE+P+ RLIVV+GGIDDQ+PSLP +TGVQ++TYS LLSQG
Sbjct: 191 AVVHAIFCVPQTLNMLLSFLSEIPSARLIVVVGGIDDQMPSLPSSTGVQVVTYSKLLSQG 250
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
RS+LQPF PPKP+D+ATICYTSGTTGTPKG VL+HGN IASVAG +L T + SD++ISY
Sbjct: 251 RSSLQPFHPPKPEDIATICYTSGTTGTPKGVVLTHGNFIASVAGISLSTSYSTSDIFISY 310
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITS 363
LPLAHIYER NQVMTVY GVAVGFYQGDNMKLMDDMAALRPT+FCSVPRLYNRIYAGI +
Sbjct: 311 LPLAHIYERVNQVMTVYCGVAVGFYQGDNMKLMDDMAALRPTIFCSVPRLYNRIYAGIMN 370
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
AV+ SGGLRERLFNAAYNAKKQA+L+GKNPSPMWDRLVFNKIKD+LGGRVR + SGASPL
Sbjct: 371 AVKASGGLRERLFNAAYNAKKQALLNGKNPSPMWDRLVFNKIKDRLGGRVRLIVSGASPL 430
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
SPDVL+FL+ICFGGR+ EGYGMTET+ IS +DEGD+L+GHVGSP+ +CE+KLVDVPEMN
Sbjct: 431 SPDVLEFLRICFGGRIIEGYGMTETTSPISSMDEGDSLNGHVGSPSPSCEVKLVDVPEMN 490
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
YTS+D+P PRGEIC+RGP++F+GYYKDE QT+EVI+EDGWFH+GDIG+W+PGGRLKIIDR
Sbjct: 491 YTSDDKPYPRGEICIRGPIVFQGYYKDEEQTREVINEDGWFHSGDIGLWLPGGRLKIIDR 550
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603
KKNIFKLAQGEYIA EKIENVYAKCKF+ QCFVYGDS NS+LVA+VSVD D LKAWAASE
Sbjct: 551 KKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSLNSSLVAVVSVDHDVLKAWAASE 610
Query: 604 G 604
G
Sbjct: 611 G 611
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432710|ref|XP_004134142.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/606 (80%), Positives = 550/606 (90%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MDS+AA+RR++AI HL+ A + SSSQL+ N TAGE+ GYSVVLPEKL TGKWNVYR
Sbjct: 1 MDSSAARRRIQAIQDHLVPASEFSSSQLQLNATAGEFFSGDGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPLKLV RFPDHPEIGT HDNF R+ D +RDYKYLGTR+R DGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLKLVDRFPDHPEIGTLHDNFTRSTDVYRDYKYLGTRIRCDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL+ HGI KGSCIGLYF+NRPEWL+VDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 121 TARTALGSGLVNHGIPKGSCIGLYFINRPEWLVVDHACSAYSYISVPLYDTLGPDAVKYI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQ +FCVPQTLNSLLS LSE+PTVRLIVV+GG+DDQIPSLP +TGVQ+LTY++LL
Sbjct: 181 VNHALVQVIFCVPQTLNSLLSFLSEIPTVRLIVVVGGVDDQIPSLPSSTGVQVLTYASLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG +N+QPF PPK DD+ATICYTSGTTGTPKGAVL+HGNLIASVAG +L KF+PSDVY
Sbjct: 241 SQGSTNIQPFCPPKSDDIATICYTSGTTGTPKGAVLTHGNLIASVAGCSLALKFFPSDVY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV TVY GVAVGFYQGDNMKLMDDM ALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVSTVYFGVAVGFYQGDNMKLMDDMIALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG L+ERLFNAAYN+K+QA+++GK+PSP+WD+LVFNKIK KLGGRVR + SGA
Sbjct: 361 IINAVKTSGVLKERLFNAAYNSKRQAIMNGKSPSPLWDKLVFNKIKAKLGGRVRVLASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPD+L+FLKICFGG V EGYGMTETSC+IS +D D L GHVG+PN ACEIKLVDVP
Sbjct: 421 SPLSPDILEFLKICFGGVVFEGYGMTETSCVISAMDPDDTLCGHVGAPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTS+DQP RGEICVRGPL+FKGY+KDE+QT+E +DEDGW HTGDIG+W+ GGRLKI
Sbjct: 481 EMNYTSDDQPYSRGEICVRGPLVFKGYFKDEVQTREAVDEDGWLHTGDIGLWMQGGRLKI 540
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCFVYGDSFN++LVA+VSVD + LKAWA
Sbjct: 541 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSFNASLVAVVSVDVETLKAWA 600
Query: 601 ASEGIQ 606
+SEGI+
Sbjct: 601 SSEGIK 606
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444293|ref|XP_003592424.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481472|gb|AES62675.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/607 (82%), Positives = 554/607 (91%), Gaps = 2/607 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598
KIIDRKKNIFKLAQGEYIA EKIENVY KC FV QCF+YGDSFNS+LV++VSVD D +KA
Sbjct: 541 KIIDRKKNIFKLAQGEYIAPEKIENVYVKCNFVAQCFIYGDSFNSSLVSVVSVDPDVMKA 600
Query: 599 WAASEGI 605
WAAS+ I
Sbjct: 601 WAASQNI 607
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444291|ref|XP_003592423.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481471|gb|AES62674.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/623 (80%), Positives = 554/623 (88%), Gaps = 18/623 (2%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG----------------DSFN 582
KIIDRKKNIFKLAQGEYIA EKIENVY KC FV QCF+YG DSFN
Sbjct: 541 KIIDRKKNIFKLAQGEYIAPEKIENVYVKCNFVAQCFIYGKERNSAYIFSVCVFRRDSFN 600
Query: 583 SALVAIVSVDQDALKAWAASEGI 605
S+LV++VSVD D +KAWAAS+ I
Sbjct: 601 SSLVSVVSVDPDVMKAWAASQNI 623
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147863228|emb|CAN82622.1| hypothetical protein VITISV_002313 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/606 (76%), Positives = 537/606 (88%), Gaps = 1/606 (0%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
M+STA QRRLKAI GHL+ S ++ + TA E+ QGYSVVLPEKL+TGKWNVYR
Sbjct: 1 MESTA-QRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHTQGYSVVLPEKLNTGKWNVYR 59
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S RSPLKL+SR P+HPEIGT HDNF+ A++ F+DY YLGTRVR DGTVGEYKWMTYGEAG
Sbjct: 60 SVRSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAG 119
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
T R +GSGL +HG+ +G+CIGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 120 TVRLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYI 179
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FC+P TLN+LLS LSE+P+VRL+VV+GGID+ +PSLP + V++++++ LL
Sbjct: 180 VNHADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLL 239
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG S+LQPF PPKP+D+ATICYTSGTTGTPKG +L+HGNLIA++AGA+L KF PSD+Y
Sbjct: 240 SQGHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIY 299
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+ Y G AVGFYQGDN+KLMDD+AALRPT+FCSVPRLYNRIY+G
Sbjct: 300 ISYLPLAHIYERANQVLLPYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSG 359
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG LR+ LFNAAYN+KKQ ++SG+NPSPMWDRLVF+KIK LGGRV FMGSGA
Sbjct: 360 IMNAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGA 419
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV+DFL++CFG +V EGYGMTETSCLIS +D+GDNLSGHVGSPN ACEIKLVDVP
Sbjct: 420 SPLSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVP 479
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTSEDQP PRGEICVRGP++F+GYYKDE+QTKEVID DGW HTGDIG+W+PGGRLKI
Sbjct: 480 EMNYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKI 539
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF+YGDS NS LVAIVSVD D LK WA
Sbjct: 540 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWA 599
Query: 601 ASEGIQ 606
SE I+
Sbjct: 600 TSEAIK 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088349|emb|CBI36794.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/606 (76%), Positives = 537/606 (88%), Gaps = 1/606 (0%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
M+STA QRRLKAI GHL+ S ++ + TA E+ QGYSVVLPEKL+TGKWNVYR
Sbjct: 1 MESTA-QRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHSQGYSVVLPEKLNTGKWNVYR 59
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S RSPLKL+SR P+HPEIGT HDNF+ A++ F+DY YLGTRVR DGTVGEYKWMTYGEAG
Sbjct: 60 SVRSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAG 119
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
T R +GSGL +HG+ +G+CIGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 120 TVRLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYI 179
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FC+P TLN+LLS LSE+P+VRL+VV+GGID+ +PSLP + V++++++ LL
Sbjct: 180 VNHADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLL 239
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG S+LQPF PPKP+D+ATICYTSGTTGTPKG +L+HGNLIA++AGA+L KF PSD+Y
Sbjct: 240 SQGHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIY 299
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+ Y G AVGFYQGDN+KLMDD+AALRPT+FCSVPRLYNRIY+G
Sbjct: 300 ISYLPLAHIYERANQVLLAYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSG 359
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG LR+ LFNAAYN+KKQ ++SG+NPSPMWDRLVF+KIK LGGRV FMGSGA
Sbjct: 360 IMNAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGA 419
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV+DFL++CFG +V EGYGMTETSCLIS +D+GDNLSGHVGSPN ACEIKLVDVP
Sbjct: 420 SPLSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVP 479
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTSEDQP PRGEICVRGP++F+GYYKDE+QTKEVID DGW HTGDIG+W+PGGRLKI
Sbjct: 480 EMNYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKI 539
Query: 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600
IDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF+YGDS NS LVAIVSVD D LK WA
Sbjct: 540 IDRKKNIFKLAQGEYIAPEKIENVYAKCKFVSQCFIYGDSLNSCLVAIVSVDPDVLKDWA 599
Query: 601 ASEGIQ 606
SE I+
Sbjct: 600 TSEAIK 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 615 | ||||||
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.980 | 0.860 | 0.796 | 8e-275 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.975 | 0.857 | 0.743 | 3.4e-258 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.881 | 0.812 | 0.424 | 2.6e-118 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.796 | 0.717 | 0.467 | 1.3e-115 | |
| ZFIN|ZDB-GENE-040801-88 | 729 | zgc:101071 "zgc:101071" [Danio | 0.803 | 0.677 | 0.448 | 1e-114 | |
| UNIPROTKB|Q1LZF6 | 683 | ACSL5 "Acyl-CoA synthetase lon | 0.798 | 0.718 | 0.444 | 2.1e-113 | |
| ZFIN|ZDB-GENE-040912-169 | 681 | acsl5 "acyl-CoA synthetase lon | 0.796 | 0.719 | 0.461 | 4.1e-113 | |
| UNIPROTKB|E2QUL3 | 698 | ACSL1 "Uncharacterized protein | 0.876 | 0.772 | 0.429 | 6.6e-113 | |
| RGD|69403 | 697 | Acsl6 "acyl-CoA synthetase lon | 0.809 | 0.714 | 0.460 | 6.6e-113 | |
| MGI|MGI:894291 | 697 | Acsl6 "acyl-CoA synthetase lon | 0.804 | 0.710 | 0.459 | 8.4e-113 |
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2642 (935.1 bits), Expect = 8.0e-275, P = 8.0e-275
Identities = 481/604 (79%), Positives = 552/604 (91%)
Query: 3 STAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSS 62
S AA+RR+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS+
Sbjct: 9 SAAARRRINAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSA 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
+SP KLVSRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTA
Sbjct: 68 KSPFKLVSRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTA 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
RT +GSGL++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVN
Sbjct: 128 RTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA+VQA+FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+Q
Sbjct: 188 HATVQAIFCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRSN Q F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYIS
Sbjct: 248 GRSNPQRFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI
Sbjct: 308 YLPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGII 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+AV+TSGGL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASP
Sbjct: 368 NAVKTSGGLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSP+V++FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS DQP PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
RKKNIFKLAQGEYIA EKIENVYAKCKFVGQCF+YGDSFNS+LVA+VSVD D LK+WAAS
Sbjct: 548 RKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWAAS 607
Query: 603 EGIQ 606
EGI+
Sbjct: 608 EGIK 611
|
|
| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2485 (879.8 bits), Expect = 3.4e-258, P = 3.4e-258
Identities = 449/604 (74%), Positives = 527/604 (87%)
Query: 7 QRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNVYRSS 62
QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNVYRS
Sbjct: 8 QRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVYRSK 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGEA +
Sbjct: 68 RSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASE 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK++VN
Sbjct: 128 RQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y LLSQ
Sbjct: 188 HANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSDVYIS
Sbjct: 248 GRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY GIT
Sbjct: 308 YLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGIT 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
SAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGSGASP
Sbjct: 368 SAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
RKKNIFKLAQGEYIA EKIENVY KC+FV QCF++GDSFNS+LVAIVSVD + +K WAAS
Sbjct: 548 RKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVSVDPEVMKDWAAS 607
Query: 603 EGIQ 606
EGI+
Sbjct: 608 EGIK 611
|
|
| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 235/553 (42%), Positives = 340/553 (61%)
Query: 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR-VRVDGTVGEYK 112
G+ R+++ P KL + PD T +D V ++ D +LG R + DG G+YK
Sbjct: 32 GETRPRRNTKFP-KLTNS-PDGKTF-TLYD--VYRINKDSDSNFLGIRELLADGKRGDYK 86
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
W++Y +A +GS L+ G++KG IG++ +NRPEW++ D A +S + V LY TL
Sbjct: 87 WISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATL 146
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ-IPSLPITTGV 231
G +A++Y+VNH+ + + C + + +LS T++ IV + + V
Sbjct: 147 GANAIEYVVNHSEISVLLCEGKNVEKILSMPGT--TIKTIVSYDPLPQATLDKFKDNENV 204
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
++ S+ G N P P+D+ T+ YTSG+TG PKG +L+H N+++ VAGA
Sbjct: 205 KLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS 264
Query: 292 TK-FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
P DV++SYLPLAH +ERA + Y G +GF+ G +L +D+ LRPT C
Sbjct: 265 PAGVIPEDVHMSYLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGA 324
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
PR++ R++ + V L++ LFN N+K+ A+ G +P+WD+LVF+K KD+LG
Sbjct: 325 PRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSKQSALRLGST-TPIWDKLVFSKTKDRLG 383
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
GRV+F+ SG++PL P + +FL+ CF V GYG++E S DN GHVG P +
Sbjct: 384 GRVKFILSGSAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDNNVGHVGPPLS 443
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
ACE+KL+DVPEMNY S D+PCPRGE+C+RG +FKGY+KD +TKE + EDGWFHTGDIG
Sbjct: 444 ACEMKLIDVPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIG 503
Query: 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVS 590
W G L IIDRKKNIFKL+QGEY+AAE +E+V+ + F Q FVYGDS NS LV +V
Sbjct: 504 RWNENGTLSIIDRKKNIFKLSQGEYVAAEYLESVFVRSPFASQVFVYGDSLNSFLVGVVV 563
Query: 591 VDQDALKAWAASE 603
D + ++ AS+
Sbjct: 564 PDFEVVQKLFASK 576
|
|
| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 1.3e-115, Sum P(2) = 1.3e-115
Identities = 240/513 (46%), Positives = 319/513 (62%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+TY + +GSGL+ G S IG++ NRPEW+I ++AC YS ++VPL
Sbjct: 103 YQWLTYKQVLDRAQHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLL-SC-LSEVPTVRLIVVIGGIDDQIPSL 225
YDTLGPDA+ YIVN A + V C P+ LL +C + P ++ I+++ D ++
Sbjct: 163 YDTLGPDAILYIVNKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDR 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV+IL GR+N++ PP P+D+ +C+TSGTTG PKGA+L+H N++A+
Sbjct: 223 GAKVGVEILALQEAEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENVVANA 282
Query: 286 AGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
A A L T + SDV ISYLPLAH++ER Q + G VGF+QGD L DDM
Sbjct: 283 A-AFLRTIEDTVECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMK 341
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWD 398
L+PT+F VPRL NRIY I S T +++ L N A K + G +N S + D
Sbjct: 342 TLKPTIFPVVPRLLNRIYDKIQSGANTP--MKKFLLNFAATMKMIEVKQGIIRNDS-LLD 398
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLD 456
+LVF K+++ +GGRVR M +GA+P+SP VL FL+ G +V E YG TE S C S
Sbjct: 399 KLVFKKVQETMGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSM-- 456
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD +GHVG P IKL DV EMNY S + GE+C++GP +FKGY KD +T E
Sbjct: 457 PGDWTTGHVGPPLVCNIIKLDDVEEMNYFSSNN---EGEVCIKGPNVFKGYLKDPEKTAE 513
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
ID+DGW HTGD+G W+P G LKIIDRKKNIFKLAQGEYIA EKIENVY + V Q FV
Sbjct: 514 AIDKDGWLHTGDVGKWMPNGTLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSVAVAQVFV 573
Query: 577 YGDSFNSALVAIVSVDQDALKAWAASEGIQVTF 609
+G+S S L+ IV D + L +AA GI+ ++
Sbjct: 574 HGESLRSCLIGIVVPDAETLPEFAAKLGIKGSY 606
|
|
| ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 228/508 (44%), Positives = 323/508 (63%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GS ++ G SK IG++ NRPEW I + AC YS ISVPL
Sbjct: 118 YEWLSYSEVIERAEHLGSAFLHKGHSKSGDPYIGIFSQNRPEWTIAELACYTYSLISVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLP 226
YDTLG +A+ YI++ + V C VP+ LL C+S +V+ ++++ +D + S
Sbjct: 178 YDTLGTEAISYILDKTCISTVVCDVPEKAGLLLECVSGRQHSVKTLILMADVDADLQSRA 237
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
G+QI++ ++ + G+++ + PP+PDD+A IC+TSGTTG PKGA+L+H N++++++
Sbjct: 238 QQCGIQIMSLTDAENMGKTHRRQPEPPQPDDLAVICFTSGTTGNPKGAMLTHRNIVSNIS 297
Query: 287 G---ATLGTKFYPS-DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL 342
T T S D +ISYLPLAH++ER Q + + G +G++QGD LMDD+ AL
Sbjct: 298 AFIHVTNSTCPLSSRDSHISYLPLAHMFERVVQGVVLLHGARIGYFQGDIRVLMDDLIAL 357
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-KNPSPMWDRLV 401
+PT+F VPRL NR++ I T L+ RL A+ K+ M SG +WD+++
Sbjct: 358 KPTIFPVVPRLLNRMFDKIYGQANTP--LKRRLLEFAFRRKEAEMKSGIMRRDSIWDKII 415
Query: 402 FNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNL 461
F K++ +GG VR M +GA+P+S VL FL+ G + EGYG TE + + GD
Sbjct: 416 FKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQTECTAGSTTTLPGDWT 475
Query: 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521
+GHVG+P +IKLVDV EMNY + + GE+CVRGP FKGY KD +TKE +DE+
Sbjct: 476 AGHVGAPLPCNDIKLVDVAEMNYYAANG---EGEVCVRGPNAFKGYLKDPEKTKEALDEE 532
Query: 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF 581
GW HTGDIG W+P G LKI+DRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+GDS
Sbjct: 533 GWVHTGDIGRWLPNGSLKIVDRKKHIFKLAQGEYIAPEKIENIYIRSEAVVQAFVHGDSL 592
Query: 582 NSALVAIVSVDQDALKAWAASEGIQVTF 609
+ LVAI+ D D L WA GI+ T+
Sbjct: 593 QACLVAIIVPDPDFLPGWAKKRGIEGTY 620
|
|
| UNIPROTKB|Q1LZF6 ACSL5 "Acyl-CoA synthetase long-chain family member 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1101 (392.6 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 225/506 (44%), Positives = 323/506 (63%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y + +GS L++ G S+ S +G++ NRPEW+I + AC YS ++VPL
Sbjct: 103 YRWLSYKQVSDRAEYLGSCLLHKGYKPSQESFVGIFAQNRPEWVISEFACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSL 225
YDTLG +AV YI+N A + V C PQ L+S + + P ++L++++ +D +
Sbjct: 163 YDTLGAEAVIYIINKADIAMVICDTPQKALVLISNVEKGLTPGLKLVILMDPFEDDLKKR 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV+IL+ + + G+ N + PP P+D++ IC+TSGTTG PKGA+L+H N++++
Sbjct: 223 GEKCGVEILSLFDAENLGKENFRKPVPPAPEDLSIICFTSGTTGDPKGAMLTHANIVSNA 282
Query: 286 AG--ATLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G + F P+ DV ISYLPLAH++ER QV+ G VGF+QGD L DDM
Sbjct: 283 SGFLKCMEGVFEPNPEDVCISYLPLAHMFERIVQVIVFSYGAKVGFFQGDIRLLPDDMRT 342
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK-NPSPMWDRL 400
L+PT+F +VPRL N++Y + + +T L++ L N A +K + + G +WD+L
Sbjct: 343 LKPTLFPTVPRLLNKVYDKVQNEAKTP--LKKFLLNLAVASKFREVKRGIIRRDSLWDKL 400
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN 460
+F KI++ LGG+VR + +GA+P+SP VL FL+ G V E YG TE + + GD
Sbjct: 401 IFGKIQESLGGKVRLLITGAAPISPPVLTFLRAALGCLVFEAYGQTECTAGCTVTLPGDW 460
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
SGHVG P A +KL DVP+MNY + + GEIC+RG +FKGY K+ +T+E +D+
Sbjct: 461 KSGHVGVPMACNHVKLEDVPDMNYFAVNN---EGEICIRGHNVFKGYLKEPEKTQETLDK 517
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
DGW HTGDIG W+P G LK+IDRKKNIFKLAQGEYIA EKIE VY + V Q FV+G+S
Sbjct: 518 DGWLHTGDIGRWLPNGTLKVIDRKKNIFKLAQGEYIAPEKIETVYIRSSLVSQIFVHGES 577
Query: 581 FNSALVAIVSVDQDALKAWAASEGIQ 606
S LV +V D DAL +AA G++
Sbjct: 578 LQSFLVGVVVPDPDALPPFAAKIGVK 603
|
|
| ZFIN|ZDB-GENE-040912-169 acsl5 "acyl-CoA synthetase long-chain family member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 234/507 (46%), Positives = 322/507 (63%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+ Y + +GSGLI+ G S+ + IG++ NRPEW+I + AC YS ++VPL
Sbjct: 103 YQWLKYKQVSDRAEFLGSGLIHRGQKPSQDTFIGIFAQNRPEWIIAELACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE---VPTVRLIVVIGGIDDQIPSL 225
YDTLGP+A+ +I+N A++ V C + L SE P ++ I+++ D +
Sbjct: 163 YDTLGPEALVFIINRANISTVICDKKDKAETLLDNSEKKLTPLLKTIILMDSYDSALTER 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV +L+ ++ + G++N PPKP+D++ IC+TSGTTG PKGA+L+H N++A
Sbjct: 223 GSKIGVDVLSLKDVEALGKNNHHRPVPPKPEDLSIICFTSGTTGDPKGAMLTHENVVADA 282
Query: 286 AGA--TLGTKFYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
AG T + F P SDV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 283 AGVVRTFESVFVPVPSDVSISFLPLAHMFERVVQTVLYGVGGRVGFFQGDIRLLPDDMKA 342
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L+PTVF VPRL NR+Y + S +T ++ L N A K + G +N S MWD+
Sbjct: 343 LQPTVFPVVPRLLNRVYDKVQSGAKTP--FKKWLLNFAIEKKCAEVKQGIIRNDS-MWDK 399
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L+F+K+++ LGGRVR M +GA+P+SP VL FL+ C G ++ E YG TE + S GD
Sbjct: 400 LIFHKVQESLGGRVRVMVTGAAPISPSVLTFLRACLGCQIFEAYGQTECTAACSFTIPGD 459
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519
+GHVG+P IKLVDV EM+Y + + GEICV+G +F+GY D +T E +D
Sbjct: 460 WKTGHVGAPIPCNTIKLVDVEEMDYFASNG---EGEICVKGTNVFRGYLGDPEKTAEALD 516
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579
+DGW HTGDIG W+P G LKIIDRKKNIFKLAQGEYIA EKIENVY + V Q FV+G+
Sbjct: 517 KDGWLHTGDIGKWLPSGVLKIIDRKKNIFKLAQGEYIAPEKIENVYIRSAPVAQVFVHGE 576
Query: 580 SFNSALVAIVSVDQDALKAWAASEGIQ 606
S S+LVAIV D + L +A G++
Sbjct: 577 SLQSSLVAIVVPDPEVLPGFAEKLGLK 603
|
|
| UNIPROTKB|E2QUL3 ACSL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 242/564 (42%), Positives = 342/564 (60%)
Query: 63 RSPLKLVSRFP---DHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RSPL L S P + ++ T ++ F R + D LG+R + D Y+W++Y +
Sbjct: 72 RSPL-LDSDEPLVYFYDDVRTIYEGFQRGIQVSNDGPCLGSR-KPDQP---YEWLSYKQV 126
Query: 120 GTARTEVGSGLIYHGISKG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAV 177
VGS LI G IG++ NRPEW+I++ C AYS + VPLYDTLG +A+
Sbjct: 127 AEIAECVGSALIQKGFKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVVVPLYDTLGTEAI 186
Query: 178 KYIVNHASVQAVFC-VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
YI+N A + +F P N LL + +P +++IV++ + GV+I+
Sbjct: 187 TYIINKAELSLIFVDKPDKANLLLDGVENKLIPGLKIIVLMDSYGIDLLERGKRCGVEII 246
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK- 293
+ + GR+N Q PP P+D+A IC+TSGTTG PKGA+++H N+++ + T+
Sbjct: 247 SMKAMEDLGRANRQRPKPPAPEDLAVICFTSGTTGNPKGAMITHRNIVSDCSAFVKVTEK 306
Query: 294 ---FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
SD +IS+LPLAH+YE+ Q + + G +GF+QGD LMDD+ AL+PT+F V
Sbjct: 307 VLALNASDTHISFLPLAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVV 366
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDK 408
PRL NR++ I T+ L+ L + A K+ + SG +N S +WD+L+F+KI+
Sbjct: 367 PRLLNRMFDRIFGQANTT--LKRWLLDFASKRKEAELRSGIIRNNS-LWDKLIFHKIQSS 423
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSP 468
LGG+VR M +GA+P+S VL FL+ G + EGYG TE + GD +GHVGSP
Sbjct: 424 LGGKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTVPGDWTAGHVGSP 483
Query: 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
IKLVDV EMNY + GE+CV+GP +FKGY KD +T EV+D+DGW HTGD
Sbjct: 484 MPCNLIKLVDVEEMNYLAAKG---EGEVCVKGPNVFKGYLKDPAKTAEVLDKDGWLHTGD 540
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAI 588
IG W+P G LKIIDRKK+IFKLAQGEYIA EKIEN+Y + + V Q FV+G+S + L+AI
Sbjct: 541 IGKWLPNGTLKIIDRKKHIFKLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAI 600
Query: 589 VSVDQDALKAWAASEGIQVTFSWL 612
V D + L WA +G++ +F L
Sbjct: 601 VVPDVETLGPWARKKGLEGSFEEL 624
|
|
| RGD|69403 Acsl6 "acyl-CoA synthetase long-chain family member 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 238/517 (46%), Positives = 321/517 (62%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ + P+ DV+ SYLPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQVTFSWLSVS 615
DS + LV IV D + + WA +GI+ + L S
Sbjct: 591 DSLKAFLVGIVVPDPEVMPCWAQKKGIEGNYQELCKS 627
|
|
| MGI|MGI:894291 Acsl6 "acyl-CoA synthetase long-chain family member 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 236/514 (45%), Positives = 317/514 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ +G++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP ++ YI+N A + V P LL + E P ++L++++ +D +
Sbjct: 178 YDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + GR N PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY + C GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWT----CKGEGEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D DGW HTGDIG W+P G LKIIDRKK+IFKLAQGEY+A EKIEN+Y + + V Q +V+G
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDRKKHIFKLAQGEYVAPEKIENIYIRSEPVAQIYVHG 590
Query: 579 DSFNSALVAIVSVDQDALKAWAASEGIQVTFSWL 612
DS + LV IV D + + +WA +GI+ T+ L
Sbjct: 591 DSLKAFLVGIVVPDPEVMPSWAQKKGIEGTYQEL 624
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8LKS5 | LACS7_ARATH | 6, ., 2, ., 1, ., 3 | 0.7384 | 0.9821 | 0.8628 | yes | no |
| Q8LPS1 | LACS6_ARATH | 6, ., 2, ., 1, ., 3 | 0.7973 | 0.9691 | 0.8502 | no | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 615 | |||
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-161 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-159 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-157 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-143 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-133 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-115 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-113 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-99 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-99 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 5e-83 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 1e-68 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 3e-67 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 7e-60 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-59 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-54 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 2e-51 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-50 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-50 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-49 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 7e-43 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-42 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 2e-42 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 9e-41 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-40 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 3e-39 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 7e-38 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 7e-38 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-37 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 9e-37 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-35 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-33 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-33 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 3e-32 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 6e-32 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 7e-32 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-31 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 7e-31 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 1e-30 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-30 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-29 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-28 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-28 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 2e-27 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-27 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-27 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 9e-27 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-26 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-26 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-26 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-26 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 6e-26 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-25 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 2e-25 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-25 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-25 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-24 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 6e-24 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 4e-23 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 4e-23 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 7e-23 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-22 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 1e-22 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-22 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-21 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 1e-20 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-20 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-20 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 4e-20 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 2e-19 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-19 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 3e-19 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-19 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-18 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 3e-18 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 5e-18 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 5e-18 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 9e-18 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-17 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 6e-17 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 6e-17 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-16 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 3e-16 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 4e-16 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 4e-16 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 5e-16 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 5e-16 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 1e-15 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-15 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-15 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-15 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 3e-15 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 5e-15 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-15 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 8e-15 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-14 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-14 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 2e-14 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-14 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 3e-14 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 4e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 8e-14 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 2e-13 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 7e-13 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 8e-13 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 9e-13 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-12 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-12 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-12 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-11 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-11 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-11 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 4e-11 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 4e-11 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 6e-11 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 6e-11 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 7e-11 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 9e-11 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 1e-10 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-10 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 1e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-10 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-10 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 2e-10 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-09 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-09 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-09 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 6e-09 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 8e-09 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 1e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-08 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-08 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-08 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-08 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 2e-08 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-08 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 6e-08 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-08 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 7e-08 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 7e-08 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 8e-08 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 9e-08 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-07 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-07 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 4e-07 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 5e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 5e-07 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 2e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 2e-06 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 2e-06 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-06 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 4e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 4e-06 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 5e-06 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 5e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 6e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 7e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-06 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 8e-06 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 9e-06 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 1e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 5e-05 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-05 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 6e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 6e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 7e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-05 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-04 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-04 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 5e-04 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 8e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 8e-04 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.001 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 0.001 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 0.002 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.003 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 1210 bits (3133), Expect = 0.0
Identities = 477/571 (83%), Positives = 533/571 (93%)
Query: 36 EYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDY 95
E+ EQGYSVVLPEKL TGKWNVYRS+RSPLKLVSRFPDHPEIGT HDNFV AV+TFRDY
Sbjct: 1 EFVHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDY 60
Query: 96 KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155
KYLGTR+RVDGTVGEYKWMTYGEAGTART +GSGL+ HGI KG+C+GLYF+NRPEWLIVD
Sbjct: 61 KYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD 120
Query: 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVI 215
HACSAYS++SVPLYDTLGPDAVK+IVNHA V A+FCVPQTLN+LLSCLSE+P+VRLIVV+
Sbjct: 121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVV 180
Query: 216 GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAV 275
GG D+ +PSLP TGV+I+TYS LL+QGRS+ QPF PPKP+DVATICYTSGTTGTPKG V
Sbjct: 181 GGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVV 240
Query: 276 LSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL 335
L+HGNLIA+VAG++L TKFYPSDV+ISYLPLAHIYER NQ++ ++ GVAVGFYQGDN+KL
Sbjct: 241 LTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKL 300
Query: 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395
MDD+AALRPT+FCSVPRLYNRIY GIT+AV+ SGGL+ERLFNAAYNAKKQA+ +GKNPSP
Sbjct: 301 MDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP 360
Query: 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455
MWDRLVFNKIK KLGGRVRFM SGASPLSPDV++FL+ICFGGRV EGYGMTETSC+IS +
Sbjct: 361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM 420
Query: 456 DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK 515
DEGDNLSGHVGSPN ACE+KLVDVPEMNYTSEDQP PRGEICVRGP+IFKGYYKDE+QT+
Sbjct: 421 DEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTR 480
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCF 575
EVIDEDGW HTGDIG+W+PGGRLKIIDRKKNIFKLAQGEYIA EKIENVYAKCKFV QCF
Sbjct: 481 EVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCF 540
Query: 576 VYGDSFNSALVAIVSVDQDALKAWAASEGIQ 606
VYGDS NS+LVA+V VD + LKAWAASEGI+
Sbjct: 541 VYGDSLNSSLVAVVVVDPEVLKAWAASEGIK 571
|
Length = 651 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 703 bits (1818), Expect = 0.0
Identities = 247/500 (49%), Positives = 314/500 (62%), Gaps = 41/500 (8%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G Y+W++Y E +GSGL G+ G IG++ NRPEW+I + AC + S + VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
YDTLG +A++YI+N + VFC
Sbjct: 61 YDTLGEEAIEYILNETEISIVFC------------------------------------- 83
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
V++ ++ L G+ N P +PPKP+D+ATI YTSGTTG PKG +L+HGN++A VAG
Sbjct: 84 DAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGI 143
Query: 289 --TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
+ P+DVYISYLPLAHI+ER + + +Y G +G+Y GD L D+ L+PTV
Sbjct: 144 NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTV 203
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP-SPMWDRLVFNKI 405
F VPR+ +RIY GI + V GGL+ LFN AYN K A+ G SP+WD+LVF KI
Sbjct: 204 FVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKI 263
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465
K LGGRVR M SG +PLSPD +FL++ G V +GYG+TET + D GD +GHV
Sbjct: 264 KAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHV 323
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G P CEIKLVDVPEM Y ++D P PRGEIC+RGP +FKGYYK+ +T E DEDGWFH
Sbjct: 324 GPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFH 382
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSAL 585
TGDIG W+P G LKIIDRKKN+FKL+QGEY+A EK+EN+Y V Q VYGDS S L
Sbjct: 383 TGDIGEWLPDGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFL 442
Query: 586 VAIVSVDQDALKAWAASEGI 605
VAIV D+D L+ WAA G
Sbjct: 443 VAIVVPDEDVLEKWAAENGG 462
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 475 bits (1225), Expect = e-161
Identities = 243/568 (42%), Positives = 327/568 (57%), Gaps = 21/568 (3%)
Query: 58 VYRSSRSPLKLVSRFPD-HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYR+ S FP +I T D F ++V+ + D K LG R VDG VG Y W TY
Sbjct: 24 VYRNLLSK----KGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTY 79
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++GS L G GS +G+Y N P+W++ AC+A+S I VPLYDTLGP A
Sbjct: 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLS--CLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
V YIV+HA + VF + + LL C S ++ IV + ++ GV+
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKS-AKRLKAIVSFTSVTEEESDKASQIGVKTY 198
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---- 290
++ + L G+ N +PPKP D+ TI YTSGT+G PKG VL+H + V G L
Sbjct: 199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQ 258
Query: 291 -GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
K DVY+S+LPLAHI +R + G +VG+Y GD L DD+ L+PT+
Sbjct: 259 FEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAG 318
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG---KNPSPMWDRLVFNKIK 406
VPR++ RI+ GI A++ R +FNA Y K M G K SPM D L F K+K
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVK 378
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
KLGGR+R + SG +PLS ++ +FL++ V +GYG+TET + L D + G
Sbjct: 379 AKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET-LGPTTLGFPDEMCMLGT 437
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG+P E++L +VPEM Y +P PRGEICVRG +F GYYK+ T+EV+ +DGWF
Sbjct: 438 VGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVM-KDGWF 495
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSA 584
HTGDIG +P G LKIIDRKKN+ KL+QGEY+A E +ENVY + V +VYGDSF S
Sbjct: 496 HTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSM 555
Query: 585 LVAIVSVDQDALKAWAASEGIQVTFSWL 612
LVA+V +++ WA G +F L
Sbjct: 556 LVAVVVPNEENTNKWAKDNGFTGSFEEL 583
|
Length = 660 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 468 bits (1206), Expect = e-159
Identities = 195/544 (35%), Positives = 276/544 (50%), Gaps = 37/544 (6%)
Query: 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V D L + G ++ +TY E + SGL+ GI G + ++
Sbjct: 22 LAERVKDRPDGVALMYKEL-----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCL 203
NRPEW I D A A +SVP+Y T P+ + YI+N + + +F + L+ +L L
Sbjct: 77 AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136
Query: 204 SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL---LSQGRSNLQPFSPPKPDDVAT 260
+ P V ++VI + + +++ + L +PPKPDD+AT
Sbjct: 137 EDCPKVVDLIVIIDLVREAVE-AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLAT 195
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
I YTSGTTGTPKG +L+H NL+A VAG + P D +S+LPLAHI+ERA +
Sbjct: 196 IIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA 255
Query: 320 -YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
Y GV V F + + +D+ +RPTV VPR++ ++Y GI V + +R +LF
Sbjct: 256 LYGGVTVLFKEDPRTLL--EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR 313
Query: 378 AAYNAK--KQAMLSGKNPSPMW----DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
A K + W DRLVF KI+D LGGR+R+ SG +PLSP++L F
Sbjct: 314 WALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFF 373
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ G + EGYG+TETS ++S + G VG P E+K+ D
Sbjct: 374 RSL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD------------- 419
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI VRGP + KGYYK+ T E EDGWF TGD+G G L I RKK + KL+
Sbjct: 420 -DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLS 478
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQVTFSW 611
G+ IA E IE+ AK + Q V GD LVA++ D DAL+ WA S ++ S
Sbjct: 479 NGKNIAPEPIESKLAKSPLIEQICVVGDD-KKFLVALIVPDFDALEKWAESLNKVISASR 537
Query: 612 LSVS 615
++
Sbjct: 538 EELA 541
|
Length = 613 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 467 bits (1202), Expect = e-157
Identities = 229/538 (42%), Positives = 322/538 (59%), Gaps = 17/538 (3%)
Query: 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136
+I + F AV + + + LG R D VG Y W+TY E A +GS + G++
Sbjct: 41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVN 100
Query: 137 KGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL 196
G G+Y N PEW+I AC++ VPLYDTLG +AV++I+NHA V F +
Sbjct: 101 PGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI 160
Query: 197 NSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK- 254
+S+LSCL + + ++ IV G + + GV ++ G + + PPK
Sbjct: 161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCE--LPPKQ 218
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHI 309
D+ TI YTSGTTG PKG +L++ +IA V K D Y SYLPLAH+
Sbjct: 219 KTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
Y++ + + G ++GF+QGD LM+D+ AL+PT+FC VPR+Y+RIY GI + + G
Sbjct: 279 YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGG 338
Query: 370 GLRERLFNAAYNAKKQAM---LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
LR++LF+ AYN K + L + SP DRLVF+KIK+ LGGRVR + SGA+PL
Sbjct: 339 MLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRH 398
Query: 427 VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
V +FL++ +++GYG+TE+ C S + ++ G VG P E +L VPEM Y
Sbjct: 399 VEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVF-SMVGTVGVPMTTIEARLESVPEMGY 457
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+ PRGEIC+RG +F GY+K + T+EV+ DGWFHTGDIG W P G +KIIDRK
Sbjct: 458 DALSD-VPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRK 515
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602
KNIFKL+QGEY+A E +EN Y++C + +VYG+SF S LVA+V D+ AL+ WAA+
Sbjct: 516 KNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAAN 573
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-143
Identities = 230/568 (40%), Positives = 335/568 (58%), Gaps = 21/568 (3%)
Query: 58 VYRSSRSPLKLVSRFPDHPE-IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYRS + FP+ E + + D F +V+ + + LG R VDG G+Y W TY
Sbjct: 27 VYRSIFAK----DGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTY 82
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++G+ L G+ + G+Y N PEW+I AC+A+ VPLYDTLG A
Sbjct: 83 QEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGA 142
Query: 177 VKYIVNHASVQAVFCVPQTLNSLL-SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235
V++I++H+ V VF + ++ L +C + ++ +V GG+ + T G+ I
Sbjct: 143 VEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYA 202
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TL 290
+ L G K D+ TI YTSGTTG PKG ++S+ +++ +AG +
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+SYLPLAHI++R + + G A+GF++GD L++D+ L+PT+FC+V
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAV 322
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKD 407
PR+ +R+Y+G+ + G L++ +F++A++ K M G++ SP+ D+LVFNK+K
Sbjct: 323 PRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQ 382
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC---LISQLDEGDNLSGH 464
LGG VR + SGA+PL+ V FL++ V +GYG+TE SC +S DE D L G
Sbjct: 383 GLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE-SCAGTFVSLPDELDML-GT 440
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG P +I+L VPEM Y + PRGEIC+RG +F GYYK E TKEV+ DGW
Sbjct: 441 VGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWL 498
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSA 584
HTGD+G W P G +KIIDRKKNIFKL+QGEY+A E IEN+Y + + V +VYG+SF S
Sbjct: 499 HTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESF 558
Query: 585 LVAIVSVDQDALKAWAASEGIQVTFSWL 612
LVAI + +Q L+ WAA G+ ++ L
Sbjct: 559 LVAIANPNQQILERWAAENGVSGDYNAL 586
|
Length = 666 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 405 bits (1042), Expect = e-133
Identities = 207/560 (36%), Positives = 307/560 (54%), Gaps = 42/560 (7%)
Query: 85 FVRAVDTFRDYKYLGTRVRV--------DG------TVGEYKWMTYGEAGTARTEVGSGL 130
F ++ + D + LGTR + DG +GEY+W+TYG+ SGL
Sbjct: 64 FEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGL 123
Query: 131 IYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 190
+ G +K + ++ R EWLI C + V +Y +LG +A+ + +N V V
Sbjct: 124 VALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVI 183
Query: 191 CVPQTLNSLLSCLSEVPTVRLIVVI-GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + L L+ S++ TV+ ++ + D SL ++ + ++S + G+ N
Sbjct: 184 CDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVD 243
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAH 308
P P+D+A I YTSG+TG PKG +++HGN++A+VAG T+ K +DVY++YLPLAH
Sbjct: 244 PDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAH 303
Query: 309 IYERANQVMTVYSGVAVGFYQGDNMKLMD-----------DMAALRPTVFCSVPRLYNRI 357
I E A + + G A+G+ G + L D D +AL+PT+ +VP + +R+
Sbjct: 304 ILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRV 361
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK------NPSPMWDRLVFNKIKDKLGG 411
G+ V GGL ++LF+ AY ++ A + G +WD LVF KI+ LGG
Sbjct: 362 RDGVRKKVDAKGGLAKKLFDIAY-KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGG 420
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-GHVGSPNA 470
R+RFM SG +PLS D F+ IC G + +GYG+TET C + E D+ S G VG P
Sbjct: 421 RIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET-CAGATFSEWDDTSVGRVGPPLP 479
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEV--IDEDG--WFHT 526
C +KLV E Y D+P PRGEI + GP + GY+K++ +T EV +DE G WF+T
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALV 586
GDIG + P G L+IIDRKK+I KL GEY++ K+E + +V V+ D F+S V
Sbjct: 540 GDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCV 599
Query: 587 AIVSVDQDALKAWAASEGIQ 606
A+V Q AL+ WA GI
Sbjct: 600 ALVVPSQQALEKWAKKAGID 619
|
Length = 696 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 359 bits (923), Expect = e-115
Identities = 181/522 (34%), Positives = 271/522 (51%), Gaps = 36/522 (6%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E +++TY E G GL G++KGS + +Y R EWL + + S ++ +Y
Sbjct: 118 ETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVY 177
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPI 227
LG DA+ Y + +A+ C + + +LL + +P +I + D +P+
Sbjct: 178 ANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYL-----DSLPASVD 232
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKP---DDVATICYTSGTTGTPKGAVLSHGNLIAS 284
T G +++ +++++++G S P DD+A I YTSGTTG PKG + +HG+L A
Sbjct: 233 TEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292
Query: 285 VAGATLGTKFY-------PSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD 337
+ L + + Y SYLPLAHI E + + G +GF G L D
Sbjct: 293 IL--ALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTD 348
Query: 338 -------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
D+ RP VPR+++ I + + + G L+ R+F+ AY ++ +A+ G
Sbjct: 349 TFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEG 408
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC 450
K+ +P W+ VF+ + LGGRVR M SG PLS +F+ + FG V +G+G+TET C
Sbjct: 409 KD-TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466
Query: 451 LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510
GD VG E+KL+D E +T D P PRGEI +RGP +FKGYYK
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHT--DTPEPRGEILLRGPFLFKGYYKQ 524
Query: 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKF 570
E T+EV+DEDGWFHTGD+G G L+II R K + K GEYIA E +E +Y + +
Sbjct: 525 EELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNEL 584
Query: 571 V---GQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQVTF 609
V G C V S + A+V D+ A+A GI+ +
Sbjct: 585 VVPNGVC-VLVHPARSYICALVLTDEAKAMAFAKEHGIEGEY 625
|
Length = 700 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 344 bits (886), Expect = e-113
Identities = 138/358 (38%), Positives = 192/358 (53%), Gaps = 50/358 (13%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE-R 312
KPDD+AT+ YTSGTTG PKG +L+H NL+A A P D +S+LPLAH++E R
Sbjct: 86 KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + + SG V F + L++D+ +RPTVF +VPR++ +IYAGI + V +G L+
Sbjct: 146 LGEYLPLSSGARVNFAESPE-TLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLK 204
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
+LF A GGR+RF SG +PL P+VL+F +
Sbjct: 205 RKLFRWA----------------------------LGGGRLRFAVSGGAPLPPEVLEFFR 236
Query: 433 ICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + + GD G VG P E+++ +
Sbjct: 237 A-LGIPILEGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAED------------- 282
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552
GEI VRGP + KGYYK+ T E +DEDGW HTGDIG G L I DRKK++ A
Sbjct: 283 -GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAG 341
Query: 553 GEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQDALKAWAASEGIQVT 608
G+ IA + IEN ++ Q V GD + +AL+ + D +AL+ WA G+ T
Sbjct: 342 GKNIAPQPIENALKASPYISQAVVVGDDRPYLTALIVL---DPEALEKWAEQHGLPFT 396
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = 1e-99
Identities = 163/502 (32%), Positives = 226/502 (45%), Gaps = 64/502 (12%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
G EY T+ + + + L G+ G I + N EW+I D A +
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS 224
SVPLY TL + ++Y++ H+ +A+F V + + + I+
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALF-VGKLDDWDAMKAGVPEGLPTII----------L 106
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS 284
P +T + +LL+ LQ P+P+D+ATI YTSGTTG PKG +LS G +
Sbjct: 107 FPYSTLKDHYKWDDLLAATEP-LQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFA 165
Query: 285 VAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQG-DNMKLMDDMAAL 342
G P+D +SYLPLAHI ER + ++YSG V F + D D+
Sbjct: 166 AQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD--TFAADLQRA 223
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
RPTVF SVPRL+ + GI + + L P+ LV
Sbjct: 224 RPTVFFSVPRLWTKFQQGILAKL--PPEKLNLLLKI----------------PILSSLVK 265
Query: 403 NKIKDKLG-GRVRFMGSGASPLSPDVLDF-----LKICFGGRVTEGYGMTETSCLISQLD 456
KI LG + R GSGA+P+ P ++ + L IC EGYGMTE +
Sbjct: 266 KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPIC------EGYGMTENFAYSTLNY 319
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD G VG P E+K+ SED GEI +R P + GYYKD +T E
Sbjct: 320 PGDRRIGTVGKPIPGVELKI---------SED-----GEILIRSPGLMSGYYKDPEKTAE 365
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
EDGW HTGD G G LKI R K +FK ++G+Y+A IEN+ + V Q V
Sbjct: 366 AFTEDGWLHTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCV 425
Query: 577 YGDSFNSALVAIVSVDQDALKA 598
G VA+V + + A
Sbjct: 426 VGSGLPQP-VALVVLSEAADPL 446
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 3e-99
Identities = 125/473 (26%), Positives = 191/473 (40%), Gaps = 72/473 (15%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + + L G+ G + + N PEW++ A VPL +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
+ + YI+ + + + + L LL L ++ + ++++ G +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV-----------GDDGEGLD 109
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF 294
+ L G S P P PDD+A I YTSGTTG PKG +L+H NL+A AG
Sbjct: 110 LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169
Query: 295 YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK---LMDDMAALRPTVFCSVP 351
P D + LPL + +G + + L+D + + TV VP
Sbjct: 170 TPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVP 229
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L + +K+ LS
Sbjct: 230 TLLRLLLKAP--------------------EEKKYDLS---------------------- 247
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS--CLISQLDEGDNLSGHVGSP 468
+R + SG PL P++L L+ FGG + GYG TET+ + + + G +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307
Query: 469 NAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF- 524
E+K++D E +P P GE+C+RGP + +GY D T E EDGW
Sbjct: 308 LPGVEVKVLD-------EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGM 360
Query: 525 -HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
TGD+G W G L+I+ RK + K+ GE I +IE V + V + V
Sbjct: 361 YRTGDLGRWDEDGYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 270 bits (691), Expect = 5e-83
Identities = 145/512 (28%), Positives = 221/512 (43%), Gaps = 80/512 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + + L G+ G + + N PE+LI A ++VPL L
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + YI+N A + + + L + +P V +++++G DD++P
Sbjct: 99 PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP---------- 148
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+T L ++G P PDD+A + YTSGTTG PKG VL+H NL+A+ AG A LG
Sbjct: 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208
Query: 292 TKFYPSDVYISYLPLAHIYERANQVM---TVYSGVAVGFYQG---DNMKLMDDMAALRPT 345
P DV +S+LPL HI+ V + G + D +++ + + T
Sbjct: 209 GGLTPDDVVLSWLPLFHIF--GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVT 266
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
V VP + L +
Sbjct: 267 VLSGVPTFLREL-------------LDNPEKD---------------------------- 285
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLS 462
D L +R + SG +PL P++L+ + FG + EGYG+TETS +++ D+
Sbjct: 286 DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKP 345
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG 522
G VG P E+++VD E P GEI VRGP + KGY+ T E DEDG
Sbjct: 346 GSVGRPLPGVEVRIVDPD----GGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDG 401
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---D 579
W TGD+G G L I+ R K++ GE I E+IE V A+ V + V G +
Sbjct: 402 WLRTGDLGYVDEDGYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDE 460
Query: 580 SFNSALVAIV--------SVDQDALKAWAASE 603
+ +VA+V + + L+A+
Sbjct: 461 RWGERVVAVVVLKPGGDAELTAEELRAFLRKR 492
|
Length = 534 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 1e-68
Identities = 149/520 (28%), Positives = 238/520 (45%), Gaps = 66/520 (12%)
Query: 112 KW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
W +TY + A + + G+ + +G+ N PEW I I+V +Y
Sbjct: 5 GWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIY 64
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGG-IDDQIPSLPI 227
T P+A +Y+ + + L +L+ ++P ++ I+ + ++ P+L
Sbjct: 65 TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNL-- 122
Query: 228 TTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL- 281
++ + GRS KP+ T+ YTSGTTG PKG +LSH N+
Sbjct: 123 ------YSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNIT 176
Query: 282 -IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG----FYQGDNMK-- 334
A A + + + +SYLPL+HI A Q++ ++ ++VG F Q D +K
Sbjct: 177 WTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLPISVGGCVYFAQPDALKGT 233
Query: 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA------YNAKKQAML 388
L+ + +RPT F VPR++ +I + + S GL+ ++ + A N K
Sbjct: 234 LVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMG-- 291
Query: 389 SGKNPSPMW----DRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDF---LKICFGGRVT 440
G++P PM +LVF K++ LG R + +GA+P+S + L+F L I +
Sbjct: 292 -GESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNI----PIM 346
Query: 441 EGYGMTETSCL--ISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
E YGM+ETS +S LS G CE K+ + P+ + GEIC+
Sbjct: 347 ELYGMSETSGPHTVSNPQNYRLLS--CGKALPGCETKIHN-PDAD--------GIGEICI 395
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
G +F GY E +T+E IDEDGW H+GD+G G L I R K + A GE +
Sbjct: 396 WGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGGENVPP 455
Query: 559 EKIEN-VYAKCKFVGQCFVYGDS--FNSALVAI-VSVDQD 594
IE V + + + GD F S L+ + VD +
Sbjct: 456 VPIEEAVKKELPIISNAMLVGDKRKFLSMLLTLKCEVDPE 495
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 3e-67
Identities = 133/512 (25%), Positives = 208/512 (40%), Gaps = 85/512 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY E + + L G+ KG + ++ N E+L A + P+ L
Sbjct: 32 TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLK 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P+ + YI+N A + V + + L + L ++PTVR ++V G ++
Sbjct: 92 PEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPA------APLAPEV 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
Y LL+ S+ F +D A + YTSGTTG PKG VLSH NL K
Sbjct: 146 GEYEELLA-AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLK 204
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSG---VAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+ +P+ H++ + + +G V + +N L+D + R T F +V
Sbjct: 205 LSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPEN--LLDLIETERVTFFFAV 262
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P ++ Q +L + F+
Sbjct: 263 PTIW------------------------------QMLLKAPRAYFVD----FS------- 281
Query: 411 GRVRFMGSGASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLIS------QLDEGDNLSG 463
+R + G + L P +L +F + FG + +GYGMTETS ++S QL
Sbjct: 282 -SLRLVIYGGAALPPALLREFKEK-FGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVI 518
G P E ++VD + + P GEI VRGP + +GY+ T E I
Sbjct: 340 SAGRPLPGVEARIVD-DDGD------ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI 392
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D GW HTGD+G G L I DR K++ GE I ++E+ V + V G
Sbjct: 393 D-GGWLHTGDVGYIDEDGYLYITDRIKDVIISG-GENIYPRELEDALYGHPAVAEVAVIG 450
Query: 579 ---DSFNSALVAIV------SVDQDALKAWAA 601
+ + VA+V ++D L+A+
Sbjct: 451 VPDEKWGERPVAVVVLKPGATLDAKELRAFLR 482
|
Length = 521 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 7e-60
Identities = 113/450 (25%), Positives = 177/450 (39%), Gaps = 116/450 (25%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L G+ KG + L N P++ I + VP+
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P +++ +N + + +
Sbjct: 85 PRELEHQLNDSGAKVLIVA----------------------------------------- 103
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+++ + L+ G + L PDD+A + YT GTTG PKGA+L+H NL+A+V A +
Sbjct: 104 ISFEDALASG-APLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVK 162
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG---------DNMKLMDDMAAL 342
D +++ LPL HI+ +TV + +G G + ++ ++
Sbjct: 163 DLREGEDRFLTALPLFHIFG-----LTV--NMLLGLRLGATNVLVPNFRPINVLKEIKRY 215
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R T+F VP LYN L N K+ S
Sbjct: 216 RFTIFPGVPTLYNA------------------LLNHP--EFKKYDFS------------- 242
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLIS-QLDEGDN 460
+R SG +PL +V + F + G + EGYG+TETS + + +G+
Sbjct: 243 ---------SLRLCISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGER 292
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEV 517
G +G P E+K+VD E P GE+ VRGP + KGY+ +T EV
Sbjct: 293 KPGSIGLPLPGTEVKIVD-------DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEV 345
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+ DGW TGDIG G I+DRKK++
Sbjct: 346 LT-DGWLRTGDIGYMDEDGYFYIVDRKKDM 374
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 1e-59
Identities = 108/364 (29%), Positives = 156/364 (42%), Gaps = 66/364 (18%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VLSH NL+A+ DV +S LPL H+ + +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 317 MT-VYSGVAVGFYQGDNM--KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ + +G V Y+G ++ + R TV VP LY+ +
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL---------------- 104
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
K A G + S + R + SG PLSP++L+ +
Sbjct: 105 ---------AKAAEDRGYDLSSL-----------------RLLISGGEPLSPELLERFEE 138
Query: 434 CFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + S D G VG P E+++VD E +P P
Sbjct: 139 RPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDE-------EGKPLP 191
Query: 493 ---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
GE+ VRGP + KGY+ + +T EDGW+ TGD+G G L I R K++ K
Sbjct: 192 PGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIK 251
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWA 600
+ GE + ++E+V + V + V G + +VA V + LKA
Sbjct: 252 VG-GENVYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHL 310
Query: 601 ASEG 604
Sbjct: 311 RERL 314
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-54
Identities = 109/357 (30%), Positives = 159/357 (44%), Gaps = 55/357 (15%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VL+HGNL A+ ++ SDV + LPL H++ N +
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148
Query: 317 M-TVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+++G +V F + + D + L R TVF VP +Y R+ E
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEH-----------YEF 197
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
AA A+ +R SG++ L VL+ +
Sbjct: 198 DDAAAAAARN----------------------------LRLFVSGSAALPVPVLERWEER 229
Query: 435 FGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494
G + E YGMTET +S +G+ G VG P E+++VD + + G
Sbjct: 230 TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEV---G 286
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK-NIFKLAQG 553
EI VRGP +F Y+ T E EDGWF TGD+G+ G +I+ RK +I K G
Sbjct: 287 EIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSG-G 345
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWAA 601
++A +IE + V + V G + A+VA+V ++ L+AWA
Sbjct: 346 YKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAR 402
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-51
Identities = 115/376 (30%), Positives = 189/376 (50%), Gaps = 15/376 (3%)
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
G+ I+ + ++ +N + PD + +I YTSGT+G PKG +LS+ NL +V
Sbjct: 277 KLGISIILFDDMTKNKTTNYK-IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP 335
Query: 288 ATLGTKF--YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
+ F Y ++SYLP++HIYER ++ G + + D D+ +
Sbjct: 336 LCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGN 395
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFN 403
+ VP+++NRIY I + + L+ L + +K G S + + + +
Sbjct: 396 ILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGF--SKFLEGITHISS 453
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
KIKDK+ + + +G LSP + + L + +GYG+TET+ I DN +
Sbjct: 454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTE 513
Query: 464 HVG---SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
+G SPN +++ + Y + D P+GE+ ++ IF GY+ ++ QTK E
Sbjct: 514 SIGGPISPNTKYKVRTWET----YKATDTL-PKGELLIKSDSIFSGYFLEKEQTKNAFTE 568
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
DG+F TGDI G L +DR K + KL+QGEYI + + N+Y++ F+ C VYGD
Sbjct: 569 DGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD 628
Query: 581 FNSALVAIVSVDQDAL 596
+AI+SVD+ L
Sbjct: 629 SMDGPLAIISVDKYLL 644
|
Length = 746 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-50
Identities = 113/450 (25%), Positives = 177/450 (39%), Gaps = 77/450 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L GI KG + ++ N P W+I + VPL
Sbjct: 31 LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D YI+ +A+F + L S + +P + +V+ + ++
Sbjct: 91 ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEE------DDPHTEKM 144
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
T+++ L+ G + PDDVA I +TSGTTG PKGA+L+H L+ A+ LG
Sbjct: 145 KTFTDFLAAG-DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNM---------KLMDDMAAL 342
D Y++ P H++ GV +G + ++ +
Sbjct: 204 LT--EGDRYLAANPFFHVF-----GYKA--GVNAPLMRGATILPLPVFDPDEVFRLIETE 254
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R TV P +YN + + + LS
Sbjct: 255 RITVLPGPPTMYNSLL--------------------QHPDRSAEDLSS------------ 282
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETS---CLISQLDEG 458
+R +GA+ + +L+ + G V GYG++E S D+
Sbjct: 283 ----------LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDR 332
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
++G +G+ A E K+V+ E GE+ VRGP + KGYY D T I
Sbjct: 333 KTVAGTIGTAIAGVENKIVN----ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAI 388
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548
D DGW HTGD+G G L I+DRKK++F
Sbjct: 389 DADGWLHTGDLGRLDEEGYLYIVDRKKDMF 418
|
Length = 513 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 2e-50
Identities = 106/372 (28%), Positives = 151/372 (40%), Gaps = 82/372 (22%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD A I YTSGTTG PKGA+L+H N++ + D + +PL H++
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF---- 56
Query: 315 QVMTVYSGVAVGFYQGDNMKLM---DDMAAL------RPTVFCSVPRLYNRIYAGITSAV 365
+ GV G + LM D AAL R T VP ++
Sbjct: 57 ---GLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMF----------- 102
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSP 425
A+L P +D+ +R SG +P+ P
Sbjct: 103 -------------------IALLE----HPDFDKFDL--------SSLRTGISGGAPVPP 131
Query: 426 DVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPE 481
+++ ++ F +T GYGMTETS + +Q D VG P E+K+VD
Sbjct: 132 ELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD--- 188
Query: 482 MNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P GEICVRG + KGYY D T E ID DGW HTGD+G G L
Sbjct: 189 ----PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYL 244
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------ 589
+I+ R K++ GE I +IE V + V G + + A V
Sbjct: 245 RIVGRIKDMIIRG-GENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGA 303
Query: 590 SVDQDALKAWAA 601
++ ++ L A+
Sbjct: 304 TLTEEELIAFCR 315
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 1e-49
Identities = 112/371 (30%), Positives = 156/371 (42%), Gaps = 88/371 (23%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DD A I YTSGTTG PKG +L+H NL+A+ A G P DVY+ PL H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFL 60
Query: 316 VMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ + +G V F D ++D + R T VP ++ R+ L
Sbjct: 61 LPALAAGGTVVLMPKF---DPEAVLDLIERHRVTHTFLVPTMFQRL-------------L 104
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
R F A Y+ LS +R + GA+P+ ++ +
Sbjct: 105 RLPDF-ARYD------LS----------------------SLRLIIYGAAPMPAELKRAM 135
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FG +GYGMTET + L D L G VG P E+++VD + +
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVD-------EDGR 188
Query: 490 PCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK- 545
P GEI VRGP + GY+ T E + DGW HTGD+G G L I+DRKK
Sbjct: 189 ELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKD 247
Query: 546 -------NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------ 589
NI+ AE +ENV V V G + + A+VA+V
Sbjct: 248 MIISGGENIY--------PAE-VENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGA 298
Query: 590 SVDQDALKAWA 600
++D + L A+
Sbjct: 299 TLDAEELIAFC 309
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 7e-43
Identities = 131/520 (25%), Positives = 196/520 (37%), Gaps = 103/520 (19%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA + D T V V G Y + + R + S L GI KG + +
Sbjct: 12 RAAKVYPDR----TAV-VYGDR-RYTYRETYD----RCRRLASALSKLGIGKGDVVAVLA 61
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N P L + VPL L D + +I+NH+ + +F + L+ L+
Sbjct: 62 PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ T +I + P + Y +LL+ G + P P D ++ YTS
Sbjct: 122 LSTKEIIDTEIIVIS-----PAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTS 176
Query: 266 GTTGTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-----VMTV 319
GTTG PKG V +H G + ++ G + VY+ LP+ H N +T
Sbjct: 177 GTTGNPKGVVYTHRGAYLNAL-GNVIEWGMPDRPVYLWTLPMFH----CNGWCFPWAITA 231
Query: 320 YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379
G V + D + D + + T C P + N + A
Sbjct: 232 VGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNML--------------------AN 271
Query: 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439
+ L VR M +GA P P + G V
Sbjct: 272 APEADKL---------------------PLPRPVRVMTAGAPP--PPAVIKKMEELGFEV 308
Query: 440 TEGYGMTETSCLIS---QLDEGDNLS-------------GHVGSPNAACEIKLVDVPEMN 483
T YG+TET I+ E D L +VG E+ +VD PE
Sbjct: 309 THVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVG----LEEVDVVD-PETM 363
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ PR GEI +RG + KGYYK+ T+E GWFH+GD+ + P G +
Sbjct: 364 -----KDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYI 417
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+I DR K+I ++ GE I++ ++E V K V + V
Sbjct: 418 EIKDRSKDII-ISGGENISSIEVEGVLYKHPAVLEAAVVA 456
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 2e-42
Identities = 100/369 (27%), Positives = 147/369 (39%), Gaps = 98/369 (26%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
D ATI +TSG+TG PK V + GN +AS G+ P D ++ LPL H+
Sbjct: 77 DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV------ 130
Query: 316 VMTVYSGVAV---GFYQGDNMKLMD---------DMAALRPTVFCSVPRLYNRIYAGITS 363
SG+A+ G + L D + T VP R+
Sbjct: 131 -----SGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL------ 179
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
L + + A+L LGG +P+
Sbjct: 180 -------LESLGARWLSSLR--AVL--------------------LGG---------API 201
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQL-----DEGDNLSGHVGSPNAACEIKLVD 478
P +L+ + G + YGMTET+ SQ+ D+ G VG P E+++V+
Sbjct: 202 PPSLLEQAR-QRGIPLYPTYGMTETA---SQVATLKPDDFLAKLGSVGKPLPGRELRIVN 257
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ GEI VRGP +F GY T + DEDGWFHTGD+G G L
Sbjct: 258 PQD------------GEILVRGPSLFLGYLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYL 304
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV-----S 590
++ R+ ++ ++ GE I E+IE V + V + V G D + VA V
Sbjct: 305 YVLGRRDDLI-ISGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDP 363
Query: 591 VDQDALKAW 599
V + L+A+
Sbjct: 364 VSVEELQAF 372
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 110/368 (29%), Positives = 160/368 (43%), Gaps = 73/368 (19%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY-ERA 313
PDD A I +TSGTTG PKG L+H NL+AS K PSD ++ +PL HI+
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60
Query: 314 NQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
+ + T+ +G +V F K DD+A R T + +VP ++
Sbjct: 61 SLLATLLAGGSVVCPPKF---SASKFWDDIAKYRVTWYSAVPTIH--------------- 102
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
Q +L P+P K R+RF+ S ++PL P VLD
Sbjct: 103 ---------------QILLKTAKPNPG-----------KPPPRLRFIRSASAPLPPAVLD 136
Query: 430 FLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
L+ FG V E YGMTE + I+ L G VG P A E+ ++D +
Sbjct: 137 RLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAILD-------DD 188
Query: 488 DQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+P P GEI +RGP + GY + +E DGWF TGD+G G L + R
Sbjct: 189 GRPLPPGQEGEIVIRGPNVTAGYLNNPEANRE-AFRDGWFRTGDLGYLDEDGYLFLTGRI 247
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDA 595
K + GE I+ ++E V + V + V+G + + + A V V +
Sbjct: 248 KELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEE 306
Query: 596 LKAWAASE 603
L+ +A
Sbjct: 307 LRDFARKR 314
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 9e-41
Identities = 95/324 (29%), Positives = 138/324 (42%), Gaps = 58/324 (17%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ KPDD A I +TSG+ G PKG VLSH NL+A++ DV + LPL H +
Sbjct: 140 AGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAF 199
Query: 311 E-RANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
++ + +G+ V +Y D K+ + + + T+ C P R YA
Sbjct: 200 GLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFL-RGYAR------- 251
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
NA + S RLV +GA L
Sbjct: 252 -------------NAHPE-DFSSL-------RLVV---------------AGAEKLPEAT 275
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + FG R+ EGYG TE S +IS N G VG P E+++V
Sbjct: 276 RELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETH----- 330
Query: 488 DQPCPRGE---ICVRGPLIFKGYYKDEIQTKEV-IDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ P GE + VRGP + GY +E +T EV + DGW+ TGDIG G L I+ R
Sbjct: 331 -EELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGR 389
Query: 544 KKNIFKLAQGEYIAAEKIENVYAK 567
K K+ GE ++ +E + ++
Sbjct: 390 LKRFAKIG-GEMVSLTAVEELLSE 412
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-40
Identities = 105/475 (22%), Positives = 162/475 (34%), Gaps = 98/475 (20%)
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI GS + L N E +++ HAC L L + + VQ +
Sbjct: 19 QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD 78
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S L E Q + + + GR +
Sbjct: 79 --------SLLEE-----------------------KDFQADSLDRIEAAGRYETSLSAS 107
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
D +AT+ +TSGTTG PK + N AS G+ F D ++ LPL HI
Sbjct: 108 FNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL 167
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + G + N +L++ +A R T VP NR+
Sbjct: 168 SILFRWLIEGATLRIVDKFN-QLLEMIANERVTHISLVPTQLNRL------LDEGGHNEN 220
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
R LGG S + +++
Sbjct: 221 LRKI-------------------------------LLGG---------SAIPAPLIE-EA 239
Query: 433 ICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+G + YGMTET ++ E + VG P A EIK+ D
Sbjct: 240 QQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI---------KVDNKE 290
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI V+G + KGY + ++ GWF+TGDIG G L ++ R+ ++ ++
Sbjct: 291 GHGEIMVKGANLMKGYLYQG-ELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLI-IS 348
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVS----VDQDALKAW 599
GE I E+IE V + + + V + VA + + Q L A+
Sbjct: 349 GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQAKLIAY 403
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-39
Identities = 108/473 (22%), Positives = 160/473 (33%), Gaps = 131/473 (27%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE A + + L G+ G + N E+++V AC+ + P+
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I+ A + +F VP G D ++P
Sbjct: 62 ERELGFILRQARARVLF-VPDEF-------------------RGFD--YAAMP------- 92
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
DDVA + YTSGTTG PKG + +H L+A V
Sbjct: 93 ----------------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG 130
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ----GDNMKLMDD---------MA 340
P DV + PLAHI +G G G + L D +
Sbjct: 131 LTPDDVVLMPSPLAHI-----------TGFLYGLELPLLLGATVVLQDRWDPARALELIR 179
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
T A + +A +G L
Sbjct: 180 EHGVTFTMGATPF----LADLLAAADAAGPDLPSL------------------------- 210
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL--DEG 458
R G +P+ ++ G +V YGMTE + D
Sbjct: 211 -------------RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPD 257
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTK 515
D + G P E+++VD + P GE+ VRGP +F GY D
Sbjct: 258 DKRAATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNT 309
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKC 568
E +DGWF TGD+G G L+I RKK+I + GE I+A +IE++ +
Sbjct: 310 EAFTDDGWFRTGDLGRLDADGYLRITGRKKDII-IRGGENISAREIEDLLLRH 361
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 7e-38
Identities = 65/167 (38%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
+R + SGA+PLS ++ + L+ F + +GYGMTET + GD G VG
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E K+VD ++ RGE+CV+GP I KGY + TKE IDEDGW HTGDIG
Sbjct: 325 VEAKIVDEDGGKSLGPNE---RGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGY 381
Query: 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ G I+DRKK + K + AE +E V + V V G
Sbjct: 382 FDEDGNFYIVDRKKELIKYKGYQVPPAE-LEAVLLEHPKVADAAVIG 427
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 7e-38
Identities = 109/432 (25%), Positives = 166/432 (38%), Gaps = 88/432 (20%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + YI+NHA + +F L L + V + D P T+
Sbjct: 84 LSPEQIAYIINHAEDKVIFVDD----DFLPLLEAIAPRLPTVKAVVVYDDADM-PETSLP 138
Query: 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGA 288
+ Y LL + P + A +CYTSGTTG PKG V SH +L+ +
Sbjct: 139 NVYAYEELLEEESPEY--EWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASAL 196
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG---FYQGDNMK---LMDDMAAL 342
SD + +P+ H N Y+ VG G + L+D +
Sbjct: 197 PDSLGLSESDTVLPVVPMFH----VNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEEE 252
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
+ TV VP ++ GL L A + + S +
Sbjct: 253 KVTVSAGVPTIWL--------------GLLNYL-----EANGKDLSSLRR---------- 283
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--------- 453
+ G S L +++ L+ G V +GMTETS L +
Sbjct: 284 -------------VVVGGSALPRSLIEKLEE-RGVEVIHAWGMTETSPLGTVSRLKPHLV 329
Query: 454 --QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKG 506
+E L G P E+++VD E P GE+ VRGP +
Sbjct: 330 DLPEEEKLELRAKQGRPVPGVELRIVD-------DEGNELPWDGKTVGELVVRGPWVTGS 382
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566
YYKD +T+E+ DGWF TGD+ + G ++I DR K++ K + GE+I++ ++EN
Sbjct: 383 YYKDPEKTEEL-TRDGWFRTGDVAVIDEDGYIQITDRAKDVIK-SGGEWISSVELENALM 440
Query: 567 KCKFVGQCFVYG 578
V + V G
Sbjct: 441 AHPAVAEAAVVG 452
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-37
Identities = 100/331 (30%), Positives = 139/331 (41%), Gaps = 64/331 (19%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG +L+H L+ + A P DV ++ LPL HI Q
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI---NAQA 138
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
+VY+ + VG L P F S R +++ VR G +F
Sbjct: 139 YSVYAALLVG-----------ATLVLLPR-F-SASRFWDQ--------VRKHGA---TVF 174
Query: 377 NAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
N AM + K P DR +RF+ PL + +
Sbjct: 175 NLL-----GAMAAILMKQPPSPDDR----------DHPLRFVFGA--PLPAAIWPAFEER 217
Query: 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP- 492
FG ++ EGYGMTET I + GD G G P E+++VD + + P
Sbjct: 218 FGVKLVEGYGMTETGVPI--IAPGDPAPPGSCGRPRPGVEVRIVD-------EDGREVPP 268
Query: 493 --RGEICVR---GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
GE+ VR +FKGYY T + +GWFHTGD G G L +DRKK+
Sbjct: 269 GEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDEDGFLYFVDRKKDA 327
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ +GE I++ ++E V + V
Sbjct: 328 IR-RRGENISSYEVEAAILAHPAVAEAAVVA 357
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-37
Identities = 99/316 (31%), Positives = 139/316 (43%), Gaps = 82/316 (25%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TLGTKFYPSDVYISYLPLA 307
P PDDVA I YTSGTTG PKGA L+H NL A+ A LG + ++ LP+
Sbjct: 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG---PERVLAALPMF 272
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIY 358
H Y +T+ + + G + L +D M PT VP LY +I
Sbjct: 273 HAYG-----LTL--CLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA 325
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAM-LSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
A+++ + LSG VR
Sbjct: 326 EA---------------------AEERGVDLSG----------------------VRNAF 342
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-----GHVGSPNAAC 472
SGA L ++ + GG + EGYG+TETS +I G+ +S G+VG P
Sbjct: 343 SGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV----GNPMSDDRRPGYVGVPFPDT 398
Query: 473 EIKLVDVPEMNYTSEDQP-CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E+++VD PE E P GE+ VRGP +FKGY+ +T + DGWF TGD+ +
Sbjct: 399 EVRIVD-PED--PDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVV 454
Query: 532 WIPGGRLKIIDRKKNI 547
G ++I+DR K +
Sbjct: 455 MEEDGFIRIVDRIKEL 470
|
Length = 573 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-35
Identities = 111/391 (28%), Positives = 174/391 (44%), Gaps = 80/391 (20%)
Query: 207 PTVRLIV--VIGGIDDQIP--SLPITTGVQILTYSNLLSQGRSNLQPFSP--PKPDDVAT 260
P RL++ V+ + +P LP Q + +++ L++G QP + P+ DDVA
Sbjct: 159 PLKRLLINAVVKHVKKMVPAYHLP-----QAVKFNDALAKGAG--QPVTEANPQADDVAV 211
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ YT GTTG KGA+L+H NL+A++ G+ L ++ I+ LPL HIY
Sbjct: 212 LQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEG---CEILIAPLPLYHIY---- 264
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR-- 372
T + M L+ + + S PR + + V+ G +
Sbjct: 265 -AFTFHCMA---------MMLIGNH-----NILISNPR-------DLPAMVKELGKWKFS 302
Query: 373 -----ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
LF A N + + +L F+ +K L SG L
Sbjct: 303 GFVGLNTLFVALCNNEA------------FRKLDFSALKLTL--------SGGMALQLAT 342
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYGMTETS ++S G +G P + K++D + N
Sbjct: 343 AERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNELPL 401
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+ GE+CV+GP + KGY++ T E++D DGW TGDI + G ++I+DRKK++
Sbjct: 402 GEV---GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDM 458
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
L G + ++E+V A V QC G
Sbjct: 459 I-LVSGFNVYPNELEDVLAALPGVLQCAAIG 488
|
Length = 562 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-33
Identities = 130/475 (27%), Positives = 188/475 (39%), Gaps = 107/475 (22%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+DG G TY + V +GL GI +G + L N PE+++ S
Sbjct: 43 IDGATGRV--YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGA 100
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
++ T P F P + +LI+ D++
Sbjct: 101 VTT----TANP---------------FYTPAEIAKQAKASG----AKLIITQSCYVDKLK 137
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFS---------PPK----PDDVATICYTSGTTGT 270
L GV ++T + FS P+ PDDV + Y+SGTTG
Sbjct: 138 GLAEDDGVTVVT----IDDPPEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGL 193
Query: 271 PKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERANQVM--TVYSGVA 324
PKG +L+H L+ SVA G F+ DV + LP+ HIY N V+ + G A
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS-LNSVLLCGLRVGAA 252
Query: 325 VGFYQG-DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
+ + L++ + + T+ VP + I AK
Sbjct: 253 ILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAI------------------------AK 288
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEG 442
SP+ ++ + I R + SGA+PL ++ D + + +G
Sbjct: 289 ----------SPVVEKYDLSSI--------RMVLSGAAPLGKELEDAFRAKLPNAVLGQG 330
Query: 443 YGMTETS-----CLISQLDEGDNLSGHVGS--PNAACEIKLVDVPEMNYT-SEDQPCPRG 494
YGMTE CL + SG G+ NA E+K+VD PE + +QP G
Sbjct: 331 YGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNA--ELKIVD-PETGASLPRNQP---G 384
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
EIC+RGP I KGY D T ID+DGW HTGDIG L I+DR K + K
Sbjct: 385 EICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIK 439
|
Length = 537 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-33
Identities = 123/493 (24%), Positives = 191/493 (38%), Gaps = 72/493 (14%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
T+ E + L G+ G + + +NR E++ A + I+VP+ L
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + ++V+ V + VP + +VV GG D +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDD----------SV 152
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
L Y +LL++ P P D A I YTSGTTG PKGAVL+H NL
Sbjct: 153 LGYEDLLAEAGPAHAPVDIPN-DSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNG 211
Query: 294 -FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY---QGDNMKLMDDMAALRPT-VFC 348
SDV +PL HI + + + G Y D +L+D + A + T +F
Sbjct: 212 ADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFL 271
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
VP A+ QA+ + + P L
Sbjct: 272 -VP------------------------------AQWQAVCAEQQARPRDLAL-------- 292
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLS--GHV 465
R + GA+P S +L + F ++ +G TE S + L D + G V
Sbjct: 293 -----RVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G ++VD MN + GEI R P + GY+ + T E GWFH
Sbjct: 348 GKVIPTVAARVVD-ENMNDVPVGEV---GEIVYRAPTLMSGYWNNPEATAEAFA-GGWFH 402
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFN 582
+GD+ G + ++DRKK++ ++ GE I ++ENV A + + V G + +
Sbjct: 403 SGDLVRQDEEGYVWVVDRKKDMI-ISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWG 461
Query: 583 SALVAIVSVDQDA 595
VA+ +V D
Sbjct: 462 EVPVAVAAVRNDD 474
|
Length = 542 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-32
Identities = 94/366 (25%), Positives = 147/366 (40%), Gaps = 72/366 (19%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DDVA I YTSGTTG PKG + +H ++A+ A + + P V +++LPL H+ A
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV---AGM 140
Query: 316 VMTVYSGVAVGFYQGDNMKLM---DDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
++ + + Y G + L+ D AA R A+
Sbjct: 141 QGSMNAPI----YTGATLVLLTRWDREAAAR--------------------AIERYRV-- 174
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN-KIKDKLGGRVRFMGSGASPLSPDVLDFL 431
N M L+ + + D ++ +G G + L P V + L
Sbjct: 175 ----THWTN-----------IVTMVVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAERL 219
Query: 432 KICFGGRVTEGYGMTET-SCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
K G EGYG+TET +C + + D +G P + +++D PE T E+
Sbjct: 220 KALTGLLYEEGYGLTETHTC--THFNPPDRPKPQCLGIPVFGTDARVID-PE---TGEEL 273
Query: 490 PCPR-GEICVRGPLIFKGYYKDEIQTKEV---IDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
P GEI VRGP +FKGY+ T E +D +F TGD+G G +DR K
Sbjct: 274 PPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVK 333
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV--------SVDQD 594
+ G + ++E + + V + V G + A V V ++
Sbjct: 334 RMIN-VSGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEE 392
Query: 595 ALKAWA 600
+ W
Sbjct: 393 DIIEWC 398
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 6e-32
Identities = 126/501 (25%), Positives = 193/501 (38%), Gaps = 94/501 (18%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E K +T+ E A V L G+ KG + L N E ++V HA ++V L
Sbjct: 24 EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLN 83
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
L + + + ++ A V+ + L
Sbjct: 84 TRLSREELLWQLDDAEVKCLITDDDFEAKL-----------------------------I 114
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+ ++ L++ + + D+VATI YTSGTTG PKG + ++GN S G+
Sbjct: 115 PGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA 174
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFC 348
L D +++ +P+ HI + + +V G+ V + D K+ + T+
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIIS 234
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
V + R L ERL Y + + ML G P+P
Sbjct: 235 VVSTMLQR--------------LLERLGEGTYPSSFRCMLLGGGPAP------------- 267
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKIC--FGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
L+ C G V + YGMTET+ I L D L+ G
Sbjct: 268 -------------------KPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGS 308
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
G P CE+K+ P GEI V+GP + KGY E T+E +DGWF
Sbjct: 309 AGKPLFPCELKIEK-----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWF 362
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSF 581
TGDIG G L ++DR+ ++ ++ GE I +IE V V + V G D +
Sbjct: 363 KTGDIGYLDEEGFLYVLDRRSDLI-ISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKW 421
Query: 582 NSALVAIV----SVDQDALKA 598
VA V V ++ L+
Sbjct: 422 GQVPVAFVVKSGEVTEEELRH 442
|
Length = 483 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 7e-32
Identities = 104/328 (31%), Positives = 141/328 (42%), Gaps = 78/328 (23%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFYPSDVYISYLPLAHI 309
P DD+A I YTSGTTG KGA+LSHGNL S A TL +F P DV I LP+ H
Sbjct: 152 PRGADDLAAILYTSGTTGRSKGAMLSHGNL-LSNA-LTLVDYWRFTPDDVLIHALPIFHT 209
Query: 310 YERANQVMTVYSGVAVGFYQGDNM----KL-MDDMAALRP--TVFCSVPRLYNRIYAGIT 362
+ + V + VA+ G +M K D + AL P TV VP Y R
Sbjct: 210 HG-----LFVATNVAL--LAGASMIFLPKFDPDAVLALMPRATVMMGVPTFYTR------ 256
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L P R + +R SG++P
Sbjct: 257 ------------------------LLQ----EPRLTR--------EAAAHMRLFISGSAP 280
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
L + + G + E YGMTET+ S +G+ +G VG P +++ D PE
Sbjct: 281 LLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PE- 338
Query: 483 NYTSEDQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
P GEI V+GP +FKGY++ +T E DG+F TGD+G G +
Sbjct: 339 ----TGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVH 394
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAK 567
I+ R K++ + G Y NVY K
Sbjct: 395 IVGRGKDL--IISGGY-------NVYPK 413
|
Length = 504 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 3e-31
Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 72/323 (22%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
DVA + GTTG PK +H + + S + P VY++ LP AH N
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAH-----N-- 192
Query: 317 MTVYSGVAVG-FYQGDNMKLMDD---MAAL------RPTVFCSVPRLYNRIYAGITSAVR 366
T+ S +G G + L A + T VP L N
Sbjct: 193 FTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLE------- 245
Query: 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
+ WD+ +R + G +PLSP+
Sbjct: 246 ---------------------------AAEWDQADL--------SSLRVIQVGGAPLSPE 270
Query: 427 VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH-VGSP-NAACEIKLVDVPEMNY 484
+ ++ G + + +GM E ++LD+ ++ G P + A EI++VD
Sbjct: 271 LARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIVDD----- 325
Query: 485 TSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
+ +P P GE+ RGP +GYY+ +DG++ TGD+ G +++
Sbjct: 326 --QGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVV 383
Query: 542 DRKKNIFKLAQGEYIAAEKIENV 564
R K+ GE I+ E+IEN+
Sbjct: 384 GRIKDQINRG-GEKISPEEIENL 405
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 7e-31
Identities = 131/505 (25%), Positives = 218/505 (43%), Gaps = 99/505 (19%)
Query: 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV---PL 168
K +TYGE + + L G++KG+ + + N ++ + A ++ V PL
Sbjct: 47 KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPL 106
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIV--------------- 213
Y P +++ + + +A+ + ++ L++ ++V
Sbjct: 107 YT---PRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVN 163
Query: 214 -VIGGIDDQIP--SLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTT 268
V+ + +P SLP + +++ L++G Q F P K PDDVA + YT GTT
Sbjct: 164 FVVRRVKKMVPAWSLP-----GHVRFNDALAEGAR--QTFKPVKLGPDDVAFLQYTGGTT 216
Query: 269 GTPKGAVLSHGNLIASVA--GATLGTKF--YPSD---VYISYLPLAHIYE-RANQVMTVY 320
G KGA L H N++A+V A L F P ++ LPL HI+ ++ +
Sbjct: 217 GVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMR 276
Query: 321 SGVAVGFYQGDNMKLMD--DMAA----LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+G G N+ + + D+ L+ P AV T
Sbjct: 277 TG-------GRNILIPNPRDIPGFIKELKKYQVHIFP------------AVNT------- 310
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
L+NA N +P +D+L F+K+ GG G + P +L++
Sbjct: 311 LYNALLN------------NPDFDKLDFSKLIVANGG-------GMAVQRPVAERWLEMT 351
Query: 435 FGGRVTEGYGMTETS-CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G +TEGYG++ETS + SG +G P + E+ + D + N +P
Sbjct: 352 -GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP--- 406
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
GEIC+RGP + GY+ +T +V+ DG+F TGD+G+ G KI+DRKK++ L G
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMI-LVSG 465
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG 578
+ +IE V A V + G
Sbjct: 466 FNVYPNEIEEVVASHPGVLEVAAVG 490
|
Length = 557 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 79/295 (26%), Positives = 115/295 (38%), Gaps = 38/295 (12%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A +T GTTG PK A SH N +A+ A L + P DV ++ LPL H
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFH------ 54
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V +G + L P V + ++ R + SAV T
Sbjct: 55 -VGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPT------- 106
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
A Q L + S + R+ +GA+PL +V +
Sbjct: 107 ----VLAALLQVPLGDADISSL-----------------RYALTGAAPLPVEVARRFEAV 145
Query: 435 FGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPNAACEIKLVDV-PEMNYTSEDQPCP 492
G V EGYGMTE + + + G G VG +++ + + P
Sbjct: 146 TGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGE 205
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
G + +RGP +F GY D EDGW +TGD+G G L + R K++
Sbjct: 206 VGVLAIRGPNVFPGYLNDA-HNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDL 259
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-30
Identities = 97/474 (20%), Positives = 157/474 (33%), Gaps = 107/474 (22%)
Query: 105 DGTVGEYKWMTYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162
DG G ++ +TYG+ AR + + L G KG + +Y N PE +I A +
Sbjct: 32 DGEDGLFRELTYGDLRREVAR--LANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIG 89
Query: 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI 222
I + L +AV + + + T + L+ D +
Sbjct: 90 AIPAVVSPGLSAEAVADRIADLGPKVLIADDGTF-------RNGKEIALLEDA----DAV 138
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
S + L Y + + + P DD + YTSGTTG PKG V SHG +
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFE-PLPADDPLFLLYTSGTTGKPKGIVHSHGGYL 197
Query: 283 ASVAGATL--------GTKFYPSDV-------YISYLPLAH-----IYERANQVMTVYSG 322
+ SD Y + PLA +Y+
Sbjct: 198 VEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGR--------- 248
Query: 323 VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382
FY + + + + + T+F + P R+
Sbjct: 249 ---PFYSPERL--WEALEKYKVTIFGTSPTFLRRL------------------------- 278
Query: 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEG 442
K + + S +R +GS PL+P+ ++ G + +
Sbjct: 279 MKLGLGEPYDLSS-----------------LRVLGSAGEPLNPEAFEWFYSALGVWILDI 321
Query: 443 YGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR 499
YG TET I+ +G G P ++ VD E P P GE+ VR
Sbjct: 322 YGQTETGMGFIAGRPPV--KNGSSGLPLPGYAVRRVD-------DEGNPVPPGVGELVVR 372
Query: 500 G--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
P + Y+ D + KE W+ TGD G + R ++ K++
Sbjct: 373 LPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVS 425
|
Length = 528 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 3e-29
Identities = 146/557 (26%), Positives = 227/557 (40%), Gaps = 102/557 (18%)
Query: 74 DHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGL 130
D + T + F +V F D Y G K +TY EA + + L
Sbjct: 20 DLEQFRTVAEVFATSVAKFADRPAYHSFG------------KTITYREADQLVEQFAAYL 67
Query: 131 IYH-GISKGSCIGLYFVNRPEWLIVDHA--CSAYSFISV-PLYDT---------LGPDAV 177
+ + KG + L N ++ I + + ++V PLY G +
Sbjct: 68 LGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVL 127
Query: 178 KYIVNHA-SVQAVFC---VPQTLNSLLSCLSEVPTVRLI-VVIGGIDDQIPSLPITTGVQ 232
I N +VQ V V Q + + L + P L+ V+ + +P I ++
Sbjct: 128 VVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIR 187
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+ L+ GR + P +PDD+A + YT GTTG KGA+L+H NL+A++ A L
Sbjct: 188 ---FREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWL 244
Query: 291 GT--KFYP-SDVYISYLPLAHIYE-RANQ-VMTVYSGVAVGFYQGDNMK-LMDDMAALRP 344
K +V I+ LPL HI+ AN V G +M + ++ R
Sbjct: 245 AGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRF 304
Query: 345 TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
T F V L+N L N +P +D++ F+
Sbjct: 305 TAFTGVNTLFNG------------------LLN----------------TPGFDQIDFSS 330
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLS 462
+K LGG + S V + K G + E YG+TETS I+ L + +
Sbjct: 331 LKMTLGGGMAVQRS--------VAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEY-N 381
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVID 519
G +G P + + + D GEI C++GP + KGY+K +T +V+D
Sbjct: 382 GSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD 434
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG- 578
DGW HTGDI G + I+DRKK++ L G + +IE+V A V + G
Sbjct: 435 ADGWLHTGDIARMDEQGFVYIVDRKKDMI-LVSGFNVYPNEIEDVIAMMPGVLEVAAVGV 493
Query: 579 -DSFNSALVAIVSVDQD 594
D + +V +V V +D
Sbjct: 494 PDEKSGEIVKVVIVKKD 510
|
Length = 560 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 87/363 (23%), Positives = 140/363 (38%), Gaps = 97/363 (26%)
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+++L L S P P +PDD A + TSG+TG PK VL+H N++A AG
Sbjct: 143 ALRVLAIEELRSAPP--DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV 200
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM----TVYSG-----VAVGFYQGDNMKLMDDMA 340
F P DV ++++PL H+ VM VY G V + D ++ +D +
Sbjct: 201 QVNGFTPDDVSLNWMPLDHV---GGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLID 257
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
R T+ + P N +A + A+ + WD
Sbjct: 258 RYRVTITWA-P---NFAFALLNDALE------------------------RIEDRSWDL- 288
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVL-DFLKIC--FGGRVT---EGYGMTETSCLIS- 453
+R++ + + + FL++ +G +GM+ET ++
Sbjct: 289 ----------SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTY 338
Query: 454 --QLDEGDNLSGH------------------------VGSPNAACEIKLVDVPEMNYTSE 487
G + G +G P I++VD +
Sbjct: 339 SRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-------ED 391
Query: 488 DQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
P GE+ VRGP + GYY++ E EDGWF TGD+G ++ GRL I R+
Sbjct: 392 GALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLG-FLHDGRLTITGRE 450
Query: 545 KNI 547
K++
Sbjct: 451 KDM 453
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 105/448 (23%), Positives = 167/448 (37%), Gaps = 82/448 (18%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV- 192
G+ G + N PE A I+ P+ L P+ + ++ A + + +
Sbjct: 79 GVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLG 137
Query: 193 --PQT--LNSLLSCLSEVPTVRLIVVIGGIDD-------QIPSLPITTGVQILTYSNLLS 241
P T + L+ +P +R +V + +P + +IL + L+
Sbjct: 138 PFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELA 197
Query: 242 QGRSN-LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+ + L P PDDVA +T GTTG PK A +HGN +A+ L P D
Sbjct: 198 RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTV 257
Query: 301 ISYLPLAHIYERANQVM-TVYSGVAVGF-----YQGDNMKLMDD----MAALRPTVFCSV 350
LPL H+ + + G V Y+G ++ + + R V
Sbjct: 258 FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGV 315
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P Y A Q + G + S
Sbjct: 316 P--------------------------TVYAALLQVPVDGHDIS---------------- 333
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPN 469
+R+ GA+PL +V + G R+ EGYG+TE +C+ S +G+ G VG
Sbjct: 334 -SLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRL 392
Query: 470 AACEIKLVDV-PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+++V + Y + G +C+ GP +F GY + K + EDGW +TGD
Sbjct: 393 PYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGD 451
Query: 529 IG-------MWIPGGRLK--IIDRKKNI 547
+G W+ GR K II NI
Sbjct: 452 LGRIDADGYFWLT-GRAKDLIIRGGHNI 478
|
Length = 632 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 104/343 (30%), Positives = 162/343 (47%), Gaps = 61/343 (17%)
Query: 234 LTYSNLLSQGRSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+++ + L +GR +Q P P+D+A + YT GTTG KGA+L+H N++A++ A A
Sbjct: 184 ISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAY 242
Query: 291 GTKFYP-SDVYISYLPLAHIYE-RANQVMTVYSGVAVGFYQGDNMKLMD--DMAALRPTV 346
G +P ++ ++ LPL HI+ N ++ + G G N+ + + D+
Sbjct: 243 GPLLHPGKELVVTALPLYHIFALTVNCLLFIELG-------GQNLLITNPRDIPGF---- 291
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
V L + IT V T LFNA N + + L F+ +K
Sbjct: 292 ---VKELKKYPFTAIT-GVNT-------LFNALLN------------NEEFQELDFSSLK 328
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
+GG + V + G + EGYG+TE S L+S +L + G
Sbjct: 329 LSVGG--------GMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPY--DLDYYSG 378
Query: 467 S---PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
S P + EIKLVD + N +P GE+ V+GP + GY++ T EVI +DGW
Sbjct: 379 SIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYWQRPEATDEVI-KDGW 433
Query: 524 FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566
TGDI + G L+I+DRKK++ L G + +IE+V
Sbjct: 434 LATGDIAVMDEEGFLRIVDRKKDMI-LVSGFNVYPNEIEDVVM 475
|
Length = 560 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 14/145 (9%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLSGHVG-- 466
++ +GSGA+PL ++ + + F G + +GYGMTE+S + + + E D G VG
Sbjct: 276 SLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRL 335
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
PN E K+VD PE T E P P GE+ VRGP + KGY + T E ID+DGW
Sbjct: 336 VPNV--EAKIVD-PE---TGESLP-PNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWL 388
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFK 549
HTGD+G + G L I+DR K + K
Sbjct: 389 HTGDLGYFDEDGYLFIVDRLKELIK 413
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 109/464 (23%), Positives = 170/464 (36%), Gaps = 127/464 (27%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI-----VDHACSAYSF 163
GE++ +TY EA + L+ G+S RP +I ++HA A +
Sbjct: 21 GEWRRVTYAEALRQVRAIAQALLDLGLSAE---------RP-LMILSGNSIEHALLALAA 70
Query: 164 ISV--------PLYDTLGPD--AVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRL 211
+ P Y L D +++I + + AVF +L + + V +
Sbjct: 71 MYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAAL--GLAGVPV 128
Query: 212 IVVIGGIDDQIPSL------PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ V G + P T V F+ PD VA +TS
Sbjct: 129 VAVRGAPGGPAIAFAALLATPPTAAVD---------------AAFAAVGPDTVAKYLFTS 173
Query: 266 GTTGTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSG 322
G+TG PK + +H L A+ A V + +LP H + N M +Y+G
Sbjct: 174 GSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNG 233
Query: 323 VAVGFYQGDNMK----LMDDMAA-LR---PTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G D+ K L ++ LR PTV+ +VP+ + + A+ LR R
Sbjct: 234 ---GTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFEM----LVDALERDAALRRR 286
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL--- 431
F R+R + + L DV D L
Sbjct: 287 FF----------------------------------KRLRLLFYAGAALPQDVWDRLQAL 312
Query: 432 --KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ G R+ T G G TET+ + + + SG +G P E+KLV
Sbjct: 313 AVRTT-GERIPMTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV---------- 361
Query: 488 DQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
P G E+ V+GP + GY++D T E DE+G++ GD
Sbjct: 362 ----PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-27
Identities = 118/480 (24%), Positives = 190/480 (39%), Gaps = 84/480 (17%)
Query: 122 ARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
R +G+++ GI +G + L N +L + A S + +P+ L D V YI
Sbjct: 35 QRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYI 94
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+ A + + V + +++ V +VI S L
Sbjct: 95 LGDAGAKLLL-VDEEFDAI------VALETPKIVIDAAAQA--------------DSRRL 133
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+QG + P + P D+ + YTSGTT PKG + S+GNL + S+
Sbjct: 134 AQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERL 193
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
+ PL H+ G+AV + G +++ + V ++ R
Sbjct: 194 LVVGPLYHVGAFD------LPGIAV-LWVGGTLRIHREFDP--EAVLAAIER-------- 236
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
RL A+ A MLS P DR + + +GG G
Sbjct: 237 ------------HRL-TCAWMAP--VMLSRVLTVPDRDRFDLDSLAWCIGG-------GE 274
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVD 478
+ DF ++ R + YG+TET + ++ G + G G A EI++ D
Sbjct: 275 KTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD 334
Query: 479 ------VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
P M GEIC+RGP + KGY+KD +T E WF +GD+G
Sbjct: 335 GAGRWLPPNMK----------GEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYL 383
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV 589
G L + DRKK++ ++ GE IA+ ++E V + V + V G D + + A+V
Sbjct: 384 DEEGFLYLTDRKKDMI-ISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442
|
Length = 497 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-26
Identities = 103/462 (22%), Positives = 164/462 (35%), Gaps = 80/462 (17%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TYGE G+ L GI + + + L ++ PE+ + VP+ L P
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
D +Y +N + + + + L L + P +R ++V+G + P L
Sbjct: 92 DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVG------GAGPGA-----L 140
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATLG 291
+Y+ L++ L+ + DD+A Y+SG+TG PKG V H +++ + A LG
Sbjct: 141 SYAQLIATAAEELEA-AATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG 199
Query: 292 TKFYPSDVYISYLPLAHIYERANQV-MTVYSGVAVGFYQG----DNMKLMDDMAALRPTV 346
DV S L Y N + + G D + + +PTV
Sbjct: 200 IT--EDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAV--FATIERYKPTV 255
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
F VP LY AML+
Sbjct: 256 FFGVPTLYA------------------------------AMLAAPEKPERDLS------- 278
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465
+R S L ++ K FG + +G G TE + +S G G
Sbjct: 279 -----SLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNR-PGAVKYGTS 332
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDG 522
G P E+KLVD + + GEI VRG GY+ +T+E
Sbjct: 333 GKPVPGYEVKLVD-------EDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGE 384
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
W TGD G R ++ K G +++ ++E+
Sbjct: 385 WTRTGDKYYRDEDGYYWYCGRSDDMLK-VSGIWVSPFEVEDA 425
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 2e-26
Identities = 110/471 (23%), Positives = 170/471 (36%), Gaps = 99/471 (21%)
Query: 139 SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS 198
I L N +W+I D AC + +P+ ++++N A +
Sbjct: 25 KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLIS------- 77
Query: 199 LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDV 258
DD + + T L ++ S P
Sbjct: 78 --------------------DDPDAASALHTPFATLGEDLYIALRPS---ANPVELPAGT 114
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
A I YTSG+TG PKG LS L S+A A + + ++ LPLA + E
Sbjct: 115 AKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILE---PERHLCLLPLATLLENIAG 171
Query: 316 V-MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V + G V + L + L P F A ++ S L +
Sbjct: 172 VYAPLLMGATVILVPLAELGLSGS-SGLDPAQFV----------AALSRWQPHSLILVPQ 220
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL---DFL 431
L A A +Q L +RF+ G + +SP +L L
Sbjct: 221 LLMALVAAVEQGPL--------------------PPESLRFVAVGGARVSPSLLQRARAL 260
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ V EGYG++E + ++S G + G VG P ++ + + D
Sbjct: 261 GL----PVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI---------AND--- 304
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551
GEI VRG L GY + T D W+ TGD+G G L I RKKN+ +
Sbjct: 305 --GEILVRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEEGYLYINGRKKNLIITS 355
Query: 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVS-VDQDALKAW 599
G ++ E +E+ + + Q V+GD+ F AL+ + D L+A
Sbjct: 356 FGRNVSPEWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAA 406
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 85/370 (22%), Positives = 124/370 (33%), Gaps = 87/370 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP----LAHIY 310
PDD+A I +TSG+TG PKG +SH NL + + DV+ + P L+
Sbjct: 96 PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLS--- 152
Query: 311 ERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
V ++ +A G D + L + + TV+ SVP
Sbjct: 153 -----VFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVP--------SFA 199
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
S + S L PS R F G
Sbjct: 200 SLLLLSRELNPESL----------------PSL---RTFL------------FCGE---V 225
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTET--SCLISQLDE---GDNLSGHVGSPNAACEIKL 476
L + L+ F R+ YG TE + ++ N +G P +
Sbjct: 226 LPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALI 285
Query: 477 VDVPEMNYTSEDQ----PCPRGEICVRGPLIFKGYYKDEIQTKEVIDED---GWFHTGDI 529
+D ED P GE+ + GP + GY + +T + +D W+ TGD+
Sbjct: 286 LD--------EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDL 337
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV---YGDSFNSALV 586
G L + RK KL G I E+IE V + V LV
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKL-HGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLV 396
Query: 587 AIVSVDQDAL 596
A V + AL
Sbjct: 397 AFVVGKEGAL 406
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-26
Identities = 103/384 (26%), Positives = 154/384 (40%), Gaps = 100/384 (26%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A I ++SG+TG PKG +L+H NL+ ++ + DV++S++PL H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH------ 158
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY----NRIYAGITSAVRTSGG 370
M + G N LM +F P L+ ++ A I S+
Sbjct: 159 -DMGLIGFHLTPTALGINQYLMP------TRLFIRRPLLWLDKASQHRATILSSP----- 206
Query: 371 LRERLFNAAYNAKKQAMLS--GKNPSPMWD----RLVFNKIKDKLGGRVRFMGSGASPLS 424
N Y + +L WD RL+FN GA P+S
Sbjct: 207 ------NFGY----KYLLKHFKTEKIIDWDLSSVRLIFN---------------GAEPIS 241
Query: 425 PDV-LDFLKIC--FGGR---VTEGYGMTETSCLIS------------------------- 453
D+ +FL+ FG R + YG+ E + +S
Sbjct: 242 ADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKII 301
Query: 454 QLDEGDNLSG---HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510
++D ++ + VGSP CEI++VD + D+ G I ++G + GYY +
Sbjct: 302 EIDPKNSDAISFVEVGSPIDGCEIRIVD--DAGEVLPDRTI--GHIQIKGDNVTSGYYNN 357
Query: 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN-IFKLAQGEYIAAEKIENVYAK-- 567
TK+ I DGW TGD+G ++ GRL I R K+ I Q Y IE V +
Sbjct: 358 PEATKKSITPDGWLKTGDLG-FLRNGRLVITGRAKDIIIVNGQNYY--PHDIERVAEQVE 414
Query: 568 -CKF--VGQCFVYGDSFNSALVAI 588
K V C VY + S V I
Sbjct: 415 GIKLGRVAACGVYDEKEQSEEVVI 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 136/511 (26%), Positives = 210/511 (41%), Gaps = 89/511 (17%)
Query: 75 HPEIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133
HP + D + AV F + + G +D + G ++Y E + +GL YH
Sbjct: 29 HPPVPLPSDPNLDAVSFIFSHHNHNGDTALIDSSTGFS--ISYSELQPLVKSMAAGL-YH 85
Query: 134 --GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
G+ +G + L N + ++ A + I + + +K V SV F
Sbjct: 86 VMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFT 145
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
P+ + L VP + + D + P + L+ + P
Sbjct: 146 SPENVEKLSPL--GVPVI-GVPENYDFDSKRIEFP--------KFYELIK-EDFDFVPKP 193
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF------YPS--DVYISY 303
K DDVA I Y+SGTTG KG VL+H NLIA V L +F YP +VY++
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVE---LFVRFEASQYEYPGSDNVYLAA 250
Query: 304 LPLAHIYERANQVMTVYS-GVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
LP+ HIY + V+ + S G + F D +K++D + T F VP I
Sbjct: 251 LPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVID---RFKVTHFPVVPP----IL 303
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
+T + G V +K +
Sbjct: 304 MALTKKAKGVCGE-----------------------------VLKSLKQ--------VSC 326
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VG--SPNAACE 473
GA+PLS + DF++ +GYGMTE++ + ++ + LS + VG +PN +
Sbjct: 327 GAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNM--Q 384
Query: 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
K+VD + P GE+ ++GP + KGY + T+ ID+DGW TGDI +
Sbjct: 385 AKVVD---WSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFD 441
Query: 534 PGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G L I+DR K I K +G IA +E V
Sbjct: 442 EDGYLYIVDRLKEIIKY-KGFQIAPADLEAV 471
|
Length = 560 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 76/299 (25%), Positives = 121/299 (40%), Gaps = 75/299 (25%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSD--VYISYLPLAHIY 310
PD +A +TSG+TG PK + +H L A+ T F + V + +LP H +
Sbjct: 208 PDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP--FLAEEPPVLVDWLPWNHTF 265
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMK----LMDDM-AALR---PTVFCSVPRLYNRIYAGI 361
N + +Y+G G D+ K D+ LR PTV+ +VP+ + +
Sbjct: 266 GGNHNLGIVLYNG---GTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKG----WEML 318
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
A+ LR R F R++ + +
Sbjct: 319 VPALERDAALRRRFF----------------------------------SRLKLLFYAGA 344
Query: 422 PLSPDVLDFL-----KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474
LS DV D L C G R+ G GMTET+ + + +G++G P CE+
Sbjct: 345 ALSQDVWDRLDRVAEATC-GERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEV 403
Query: 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
KLV V + E+ V+GP + GY++ T E DE+G++ +GD ++
Sbjct: 404 KLVPV-------GG----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV 451
|
Length = 614 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 122/487 (25%), Positives = 195/487 (40%), Gaps = 87/487 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y + ++ L G+ G + L + E+++ A S + VPL D
Sbjct: 44 ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPAL 102
Query: 174 PDAVKYI-VNHASVQAVFCVPQTLNSLLSCLSEVPTVR---LIVVIGGIDDQIPSLPITT 229
P A + + A + V +++ PT R L V +GG
Sbjct: 103 PIAEQRVRSQAAGARVVL-----IDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVH 157
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
L + + S + +PDD A I +T GTTG PK +H N+ +SV
Sbjct: 158 ----LDAATEPTPATSTPEGL---RPDD-AMIMFTGGTTGLPKMVPWTHANIASSVRAII 209
Query: 290 LGTKFYPSDVYISYLPLAHIYER-ANQVMTVYSGVAV-----GFYQGDNMKLMDDMAALR 343
G + P D ++ +PL H + A + T+ SG AV G + DD+ A+
Sbjct: 210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHT--FWDDIKAVG 267
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + +VP ++ +I L ER A + SG+ P+ +
Sbjct: 268 ATWYTAVPTIH-QI-------------LLER-------AATEP--SGRKPAAL------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCLISQLDEG 458
RF+ S ++PL+ + L+ F V +GMTE T+ I + +
Sbjct: 298 ----------RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT 347
Query: 459 DN---LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEI 512
+N +G VG A +I++V S+ P P GE+ +RG + +GY D
Sbjct: 348 ENPVVSTGLVGRSTGA-QIRIVG-------SDGLPLPAGAVGEVWLRGTTVVRGYLGDPT 399
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG 572
T DGW TGD+G G L I R K + GE I+ E++E V A V
Sbjct: 400 ITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRG-GEKISPERVEGVLASHPNVM 457
Query: 573 QCFVYGD 579
+ V+G
Sbjct: 458 EAAVFGV 464
|
Length = 534 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 82/380 (21%), Positives = 132/380 (34%), Gaps = 91/380 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFY----PSDVYISYLPLA 307
DD+A I YTSG+TG PKG +LSH NL A S+A Y D ++ LP +
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQ-------YLELTEDDRILAVLPFS 53
Query: 308 HIYERANQVMTVYSG--VAVGF---YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
Y + + G + + + D ++ +A R T F VP +
Sbjct: 54 FDYGLSQLLTAFRVGGTLVLESRFAFPRD---VLKHLAKERITGFAGVPTTW-------- 102
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L + +R++ +
Sbjct: 103 ----------------------AQLLRLDPLARE------------DFPSLRYLTNAGGA 128
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTE-TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
L + L+ F ++ YG+TE +E D +G E+ +VD
Sbjct: 129 LPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVD-- 186
Query: 481 EMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDE-----DGWFHTGDIGMW 532
+ C GE+ RG + KGY+ D T E + + +TGD+
Sbjct: 187 -----EDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRM 241
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV 589
G L + RK ++ K G ++ +IE V V + V G A+VA+V
Sbjct: 242 DEEGYLYFVGRKDDMIKTR-GYRVSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVV 300
Query: 590 ------SVDQDALKAWAASE 603
S+D+ L
Sbjct: 301 VSADGESLDEKELLKHCRKH 320
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-25
Identities = 95/334 (28%), Positives = 131/334 (39%), Gaps = 69/334 (20%)
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
RS + P PD A I YTSGTTG PKG VLS + A + ++ DV +
Sbjct: 116 ARSWHRYPEPD-PDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVH 174
Query: 303 YLPLAHIY----------ERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPR 352
LPL H++ N+ + + Q + T++ VP
Sbjct: 175 GLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPT 225
Query: 353 LYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR 412
+++RI A +A G RL LV
Sbjct: 226 VWSRIAADPEAARALRGA---RL------------------------LV----------- 247
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
SG++ L V D L G R E YGMTET +S +G+ G VG P A
Sbjct: 248 -----SGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGV 302
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
E +LVD + + GE+ VRGP +F GY T DGWF TGD+ +
Sbjct: 303 ETRLVDEDGGPVPHDGETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360
Query: 533 IPGGRLKIIDRKK-NIFKLAQGEY-IAAEKIENV 564
P G +I+ R+ ++ K G Y I A +IE
Sbjct: 361 DPDGMHRIVGRESTDLIK--SGGYRIGAGEIETA 392
|
Length = 471 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 104/486 (21%), Positives = 158/486 (32%), Gaps = 134/486 (27%)
Query: 115 TYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
TY E R + L G+S G + L + PE + AC ++V L L
Sbjct: 12 TYRELHDLANRF--ANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLL 69
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P +++I +DD +L +T
Sbjct: 70 TPQDLEHI-------------------------------------LDDSGAALLVT---- 88
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGAT 289
+ DD+A YTSGTTG PKG + H + + A
Sbjct: 89 ---------------------EADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFAREL 127
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTV 346
LG + P D S L Y N ++ ++SG + G ++D +A RPTV
Sbjct: 128 LGLQ--PGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTV 185
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP LY A+ SG LF
Sbjct: 186 LFGVPALYR--------ALLESGAGSAPLF------------------------------ 207
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
VR S L + + G + +G G TE + G G G
Sbjct: 208 ----RSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTG 263
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
P E +LVD G++ VRGP + GY+ +T+ + DGW T
Sbjct: 264 RPVPGYEARLVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRT 318
Query: 527 GDI------GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580
GD G + GR ++ K++ G++++ ++E + V + V
Sbjct: 319 GDRFSRDADGWYRYQGRA------DDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVP 371
Query: 581 FNSALV 586
LV
Sbjct: 372 DEDGLV 377
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-24
Identities = 99/416 (23%), Positives = 160/416 (38%), Gaps = 83/416 (19%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L ++ +++ H + + + L+ +P + +V ID P P +
Sbjct: 102 LDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV----IDVDDPEYPGGRFI 157
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATL 290
L Y L+ G + P D + YTSGTTG PKG V H G + +++ L
Sbjct: 158 GALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN-IL 216
Query: 291 GTKFYPSDVYISYLPLAHIYERANQ-----VMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
VY+ LP+ H N + +G V + D + D + T
Sbjct: 217 AWGMPKHPVYLWTLPMFH----CNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVT 272
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
+C P + + A NA +
Sbjct: 273 HYCGAPIVLS----------------------ALINAPAEW------------------- 291
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET---SCLISQLDEGDNLS 462
+ + V M +GA+P V+ ++ G +T YG+TET + + + E D L
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349
Query: 463 --------GHVGSPNAACE-IKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYY 508
G E + ++D M QP P GEI RG ++ KGY
Sbjct: 350 LDERAQLKARQGVRYPLQEGVTVLDPDTM------QPVPADGETIGEIMFRGNIVMKGYL 403
Query: 509 KDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
K+ T+E GWFHTGD+ + P G +KI DR K+I ++ GE I++ ++E+V
Sbjct: 404 KNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDII-ISGGENISSIEVEDV 457
|
Length = 545 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 93/351 (26%), Positives = 127/351 (36%), Gaps = 88/351 (25%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A YTSGTTG PK A++SH + + A P DV LPL H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHS------- 134
Query: 317 MTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ G + G ++ L D+ T F V L
Sbjct: 135 NALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL-------------- 180
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM-GSGASPLSPD 426
R L N P DR +R + G+G L PD
Sbjct: 181 ---CR-YLLNQ--------------PEKPDDR----------DHPLRKIIGNG---LRPD 209
Query: 427 VLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVG-SPNAACEIKLVDV----P 480
+ D K FG R+ E YG TE + L N G VG P AA + DV P
Sbjct: 210 IWDEFKERFGVPRIVEFYGSTEGNVGFINLF---NKPGAVGRLPPAAIAVVKYDVETEEP 266
Query: 481 EMNYTSEDQPCPRGEICVRGPLI--------FKGYYKDEIQTKEVI-----DEDGWFHTG 527
+ P GE+ G L+ F GY DE K+++ D +F+TG
Sbjct: 267 IRDANGFCIKVPPGEV---GLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTG 323
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D+ G +DR + F+ +GE ++ ++E V AK V + VYG
Sbjct: 324 DLVRRDGFGYFYFVDRLGDTFRW-KGENVSTTEVEEVLAKHPGVEEANVYG 373
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 85/335 (25%), Positives = 135/335 (40%), Gaps = 63/335 (18%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
P+ V+ I +TSGT+G PKG +LS NL + + + ++ P+ HI
Sbjct: 134 PERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLIT 193
Query: 315 QVMTVYSG-----VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
V V + V+ GF + + D A L T + VP++ A R
Sbjct: 194 SVRPVLAVGGSILVSNGFEPKRTLGRLGDPA-LGITHYFCVPQM--------AQAFRAQP 244
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
G F+AA A+ +G P + D+L
Sbjct: 245 G-----FDAAALRHLTALFTGGAPHA----------------------------AEDILG 271
Query: 430 FLKICFGGRVTEGYGMTETSCLISQ-LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS 486
+L G + +G+GM+E + +D +G G P + ++VD
Sbjct: 272 WLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-------D 322
Query: 487 EDQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ CP G E+ +RGP + GY++ T DGWF TGDI G ++DR
Sbjct: 323 QGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDR 382
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
KK++F ++ GE + +IE V A + +C V G
Sbjct: 383 KKDMF-ISGGENVYPAEIEAVLADHPGIRECAVVG 416
|
Length = 488 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 7e-23
Identities = 87/318 (27%), Positives = 143/318 (44%), Gaps = 54/318 (16%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERAN 314
D+ + ++SGTTG KG +L+H NL+A++ + ++G + V + +P HI
Sbjct: 185 DLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHI----- 239
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
Y + N + M+ F + A IT V + +
Sbjct: 240 -----YGITGICCATLRNKGKVVVMSRFELRTF---------LNALITQEVSFAPIVPPI 285
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
+ N N P+ + +K+K ++ + + A+PL+P++L +
Sbjct: 286 ILNLVKN-------------PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAK 326
Query: 435 FGG-RVTEGYGMTETSCLISQLDEGDNLSGH-------VGSPNAACEIKLVDVPEMNYTS 486
F G +V E YG+TE SC+ L GD GH VG E+K +D
Sbjct: 327 FPGVQVQEAYGLTEHSCI--TLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLP 384
Query: 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
++ P GE+CVR + +GYY ++ +T IDEDGW HTGDIG G + I+DR K
Sbjct: 385 KNTP---GELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKE 441
Query: 547 IFKLAQGEYIAAEKIENV 564
+ K +G +A ++E +
Sbjct: 442 LIKY-KGFQVAPAELEAI 458
|
Length = 546 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA----YSFISVPLY 169
+T+ + + GL G+ +G + L N E+ V C A S + P Y
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN-PSY 69
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
PD + + + + + +FC P L+ + E+ V I+V+ D +
Sbjct: 70 T---PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLR----- 121
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVA 286
++ L L ++ DD A + Y+SGTTG PKG +LSH N+IA V
Sbjct: 122 -IEDLLEPRLGAED-EFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQ 179
Query: 287 GATLGTKFYPSDVYISYLPLAHIY 310
G +DV +++LP H Y
Sbjct: 180 DTLKGNPDSSNDVVLTFLPFYHAY 203
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 84/393 (21%), Positives = 144/393 (36%), Gaps = 81/393 (20%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
RL++ + ++ L + + L + P +P PDD+A + YTSG+T
Sbjct: 73 ARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGST 132
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH---IYERANQVMTVYSG--- 322
G PKG V++H +L+ +A P D + + L+ + E + +G
Sbjct: 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEE---IFGALLAGATL 189
Query: 323 -VAVGFYQGDNMKLMDDMAALRP-TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
V + D+ L+ + A P TV P L + A
Sbjct: 190 VVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAA--------------------- 228
Query: 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRV 439
A A+ S +R + G L+P ++D + G R+
Sbjct: 229 -ALPPALAS-----------------------LRLVILGGEALTPALVDRWRARGPGARL 264
Query: 440 TEGYGMTETSC-----LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
YG TET+ L+ D +G P A + ++D + +P P
Sbjct: 265 INLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLD-------DDLRPVPVG 317
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+ + GP + +GY T E D + TGD+ ++P G L+ + R
Sbjct: 318 VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGR 377
Query: 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
+ K+ +G I +IE + V + V
Sbjct: 378 IDDQVKI-RGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 92/361 (25%), Positives = 133/361 (36%), Gaps = 81/361 (22%)
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAG-AT 289
LT L + + PDD IC+TSGTTG PKG +SH LI S+A A
Sbjct: 148 SFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAI 207
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL-MDDMAALRPTVFC 348
+G + DVY+ PL HI ++ + + G + K + + T
Sbjct: 208 VG--YGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMI 265
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
+VP + A + S R S K
Sbjct: 266 TVP----AMMADLISLTRKSMT------------------------------------WK 285
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTET-----------------SC 450
+ VR + +G LS +L K F ++ YGMTE
Sbjct: 286 VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQ 345
Query: 451 LISQLDEGDNLSGH------VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIF 504
+ +++ + S H VG P E+K+ D+ G I RGP +
Sbjct: 346 TLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI---------GLDESSRVGRILTRGPHVM 396
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
GY+ +T V+ DGW TGDIG WI G L +I R + K GE + E++E
Sbjct: 397 LGYWGQNSETASVLSNDGWLDTGDIG-WIDKAGNLWLIGRSNDRIK-TGGENVYPEEVEA 454
Query: 564 V 564
V
Sbjct: 455 V 455
|
Length = 563 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 3e-21
Identities = 94/335 (28%), Positives = 145/335 (43%), Gaps = 58/335 (17%)
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
P PI +I+TY++ + +G + + PDDVA + YT GTTG PKGA+L+HGNL
Sbjct: 160 PQAPIPADPRIVTYADFV-KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT 218
Query: 283 ASVA-----GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYS---GVAVGFYQG-DNM 333
++V+ G + I LPL HIY A V+ + S G + +Q D
Sbjct: 219 SAVSIYDVWGKPSRATRGDVERVICVLPLFHIY--ALTVILLRSLRRGDLISLHQRFDVA 276
Query: 334 KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393
+ D+ R TVF VP ++ A+ L +R ++
Sbjct: 277 AVFRDIEEKRATVFPGVPTMW--------IALANDPSLEKRDLSSLATI----------- 317
Query: 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLI 452
GSG +PL +V +F + G ++ G+GMTET S
Sbjct: 318 -----------------------GSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGT 354
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512
EG + G +G E+ +V + + T P GE+ +RGP + +GY+
Sbjct: 355 GHPPEGPDKPGSIGLMLPGIELDVVSLDDP--TKVLPPGEVGELRIRGPNVTRGYWNRPE 412
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
++ E F TGDIG G ++DRKK++
Sbjct: 413 ESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDM 446
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 1e-20
Identities = 120/513 (23%), Positives = 202/513 (39%), Gaps = 86/513 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY + SGL G+++G + +Y R E + + + VP+ L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ V +I+ +V+ + + L+ L L +R ++++G P G +
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATL 290
++ LL+ G + P P D+A I YTSG+TG PKG VLSH NL+A SVA
Sbjct: 143 ASWPKLLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATY-- 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ P D ++ LPL+ Y NQ+ T FY G + L D + +
Sbjct: 199 -LENRPDDRLLAVLPLSFDYGF-NQLTT-------AFYVGATVVLHDYL----------L 239
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
PR + A+ + + A A+ P+W +L +
Sbjct: 240 PR-------DVLKALE-----KHGITGLA------AV------PPLWAQLAQLDWPESAA 275
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLD--EGDNLSGHVGS 467
+R++ + + L L+ R+ YG+TE + + L E D +G
Sbjct: 276 PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE-AFRSTYLPPEEVDRRPDSIGK 334
Query: 468 --PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
PNA E+ ++ SE P GE+ RG L+ GY+ D +T E F
Sbjct: 335 AIPNA--EVLVLR----EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFP 388
Query: 526 -----------TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQC 574
+GD G L + R+ + K + G ++ ++E V V +
Sbjct: 389 GELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTS-GYRVSPTEVEEVAYATGLVAEA 447
Query: 575 FVYG---DSFNSALVAIV------SVDQDALKA 598
+G + A+V +V +D+ AL A
Sbjct: 448 VAFGVPDPTLGQAIVLVVTPPGGEELDRAALLA 480
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 2e-20
Identities = 89/332 (26%), Positives = 150/332 (45%), Gaps = 60/332 (18%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHIY 310
+D+A + YT GTTG PKG +L+H NL V+ +G ++ +V + LP H+Y
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
A +++ G + +MK++ + + + T+F P +Y
Sbjct: 263 GMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIY-------------- 308
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
A+L+ SP+ +K+ +R SG++PL +V
Sbjct: 309 ----------------IALLN----SPL--------LKEYDISSIRACISGSAPLPVEVQ 340
Query: 429 DFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + GG++ EGYG+TE+S + S + G +G P E ++ + T E
Sbjct: 341 EKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLE----TGE 396
Query: 488 D-QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
P GEI V+GP I KGY+ +T V+ +DGW HTGD+G G + DRKK+
Sbjct: 397 ALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKD 455
Query: 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ +A G + ++E V + + V + G
Sbjct: 456 MI-VASGFNVYPREVEEVLYEHEKVQEVVTIG 486
|
Length = 563 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 3e-20
Identities = 51/124 (41%), Positives = 64/124 (51%), Gaps = 20/124 (16%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLS---GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-- 493
VT YGMTETS + +Q D L VG E+K+VD PE + PR
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-----ETVPRGE 397
Query: 494 -GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG-MWIPG-----GRLK--IIDRK 544
GE+C RG + KGY+ D +T E ID DGW HTGD+ M G GR+K II
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGG 457
Query: 545 KNIF 548
+NI+
Sbjct: 458 ENIY 461
|
Length = 559 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 4e-20
Identities = 117/480 (24%), Positives = 170/480 (35%), Gaps = 86/480 (17%)
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL-YDT 171
TY EA A L G+ +G + L NR E+L V C+ I+VP+
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105
Query: 172 LGPDAVKYIVNHAS----VQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
GP + N + V+A L + +P V L+ D S+ +
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALL--AALEAADPGDLPLPAVWLL-------DAPASVSV 156
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL----IA 283
G L P + +P D A I YTSGTTG KG H
Sbjct: 157 PAGWSTAPLPPL-----DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRN 211
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALR 343
S +G DV + LPL H N + F+Q A L
Sbjct: 212 SAEDLEIG----ADDVLYTTLPLFHT----NALNA--------FFQ----------ALLA 245
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
+ PR +G AVR G L A + +L +
Sbjct: 246 GATYVLEPRFSA---SGFWPAVRRHGATVTYLLGAMVS-----ILLSQPARE-------- 289
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
RVR P + + FG + +GYG TET+ +I+ + G G
Sbjct: 290 ---SDRAHRVRVALGPGVP--AALHAAFRERFGVDLLDGYGSTETNFVIA-VTHGSQRPG 343
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG--PLIF-KGYYKDEIQTKEV 517
+G E ++VD DQ P GE+ +R P F GY+ +T E
Sbjct: 344 SMGRLAPGFEARVVD-------EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA 396
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVY 577
+ WFHTGD + G + +DR K+ + +GE I++ ++E V V V+
Sbjct: 397 W-RNLWFHTGDRVVRDADGWFRFVDRIKDAIR-RRGENISSFEVEQVLLSHPAVAAAAVF 454
|
Length = 542 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-19
Identities = 102/394 (25%), Positives = 156/394 (39%), Gaps = 96/394 (24%)
Query: 213 VVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGT 270
VV+G + G+++LT ++LL+ P P + DD+A + TSG+TG+
Sbjct: 112 VVVGEPFLAAAPVLEEKGIRVLTVADLLAAD-----PIDPVETGEDDLALMQLTSGSTGS 166
Query: 271 PKGAVLSHGNLIASVAGATLGTKFYP-SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ 329
PK ++HGNL A+ + +F +DV +S+LPL H M + + V Y
Sbjct: 167 PKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHD-------MGMVGFLTVPMYF 219
Query: 330 GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389
G + + M LR + L ++ +T+A N AY A+L+
Sbjct: 220 GAELVKVTPMDFLRDPL--LWAELISKYRGTMTAAP-----------NFAY-----ALLA 261
Query: 390 GKNPSPMWDRLVFNKIKDKLGGR-----VRFMGSGASPLSPDVL-DFLKIC--FGGR--- 438
R + + K G +RF +GA P+ P + D L FG R
Sbjct: 262 ---------RRLRRQAKP---GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEA 309
Query: 439 VTEGYGMTETSCLIS--QLDEG--------DNLS----------GHV------GSPNAAC 472
+ YGM E + +S G D L+ G+ G P
Sbjct: 310 ILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL 369
Query: 473 EIKLVDVPEMNYTSED-QPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ED Q P G I +RG + G Y D DGW TGD
Sbjct: 370 EVRVVD--------EDGQVLPPRGVGVIELRGESVTPG-YLTMDGFIPAQDADGWLDTGD 420
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 562
+G G + + R K++ +A G I IE
Sbjct: 421 LGYLTEEGEVVVCGRVKDVIIMA-GRNIYPTDIE 453
|
Length = 545 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 2e-19
Identities = 52/145 (35%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 436 GGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G + EGYG+TETS + S G L+ G VG P +K++D + +E R
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID----DDGNELPLGER 412
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
GE+C++GP + KGY++ T E +D +GWF TGDI + P G ++I+DRKK++ + G
Sbjct: 413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLI-IVSG 471
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG 578
+ +IE+V V C G
Sbjct: 472 FNVYPNEIEDVVMAHPKVANCAAIG 496
|
Length = 562 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 3e-19
Identities = 103/420 (24%), Positives = 165/420 (39%), Gaps = 94/420 (22%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLPITTG 230
L P+ + YIVNHA + T L+ L+ + P V+ V + LP +
Sbjct: 98 LFPEQIAYIVNHAEDR-YVLFDLTFLPLVDALAPQCPNVKGWVAMTDAA----HLPAGS- 151
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDD--VATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+L Y L+ + + P+ D+ +++CYTSGTTG PKGA+ SH + + GA
Sbjct: 152 TPLLCYETLVGAQDGD---YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGA 208
Query: 289 TLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVG---FYQG---DNMKLMDDMA 340
L S D + +P+ H+ N YS G G D L + +
Sbjct: 209 ALPDAMGLSARDAVLPVVPMFHV----NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIE 264
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
A R T VP ++ G+ + +R GLR R
Sbjct: 265 AERVTFSAGVPT----VWLGLLNHMR-EAGLRFSTLR---------------------RT 298
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-------IS 453
V +G A P P ++ + +G V +GMTE S L
Sbjct: 299 V--------------IGGSACP--PAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWK 342
Query: 454 QLDEGDNLSGHV----GSPNAACEIKLVDVPEMNYTSEDQPCP-----RGEICVRGPLIF 504
+ + G ++K+V + + P G++ VRGP +
Sbjct: 343 HSQLPLDEQRKLLEKQGRVIYGVDMKIVG-------DDGRELPWDGKAFGDLQVRGPWVI 395
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
Y++ + ++D GWF TGD+ G ++I DR K++ K + GE+I++ IENV
Sbjct: 396 DRYFRGD--ASPLVD--GWFPTGDVATIDADGFMQITDRSKDVIK-SGGEWISSIDIENV 450
|
Length = 539 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 5e-19
Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 39/192 (20%)
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV------GSPNAA 471
GASP+SP L + ++ FG + YG TE +I+ L + D+ G P
Sbjct: 289 GASPMSPVRLAEAIER-FGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+ L+D + + + GEICVRGPL+ GY+ +T E DGW HTGD
Sbjct: 348 LRVALLD-------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD 399
Query: 529 IGMWIPGGRLKIIDRKK--------NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG-- 578
+ G I+DRKK N+F ++E+V A+ V Q V G
Sbjct: 400 VAREDEDGFYYIVDRKKDMIVTGGFNVF---------PREVEDVLAEHPAVAQVAVIGVP 450
Query: 579 -DSFNSALVAIV 589
+ + A+ A+V
Sbjct: 451 DEKWGEAVTAVV 462
|
Length = 524 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 2e-18
Identities = 89/465 (19%), Positives = 145/465 (31%), Gaps = 82/465 (17%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
V + +TY E + LI G+ G + + E ++ A VP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
L + + YI+ + + L L + +DD + +P
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLT-QAHLRVDDVGLPGLA----------LDDALSEIPD 355
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SV 285
T + D +A I YTSG+TG PKG + H L +
Sbjct: 356 TDPIPQAL------------------LGDALAYIIYTSGSTGQPKGVRIEHRALANLLND 397
Query: 286 AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
AGA G D ++ L+ V ++ + G + L + + P
Sbjct: 398 AGARFGLD--ADDRVLALASLSFDAS----VFEIFGALLEGAR----LVLAPALLQVDPA 447
Query: 346 VFCSVPRLYNRI-YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
L + GIT + LR L A R +
Sbjct: 448 ------ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI--------SPCERLRQLL-- 491
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLS 462
GG A PL+ R+ YG TE + +
Sbjct: 492 ----SGGE-------ALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESR 540
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVID 519
+G P A ++ ++D +P P GE+ + G + GY T E
Sbjct: 541 VPIGRPVANTQLYILD-------QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFI 593
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+ TGD+ + G L+ + RK + K+ +G I +IE
Sbjct: 594 ALRLYRTGDLARPLADGALEYLGRKDSQVKI-RGFRIELGEIEAA 637
|
Length = 642 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-18
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI+ +G N E L V A + + PL L D + +I+NHA + + P
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP 253
+ L L E P VR +V IG D + + G+++ +Y LL GRS + +
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVYDWPEL 178
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL 281
A ICY++GTTG PKG V SH +L
Sbjct: 179 DETTAAAICYSTGTTGAPKGVVYSHRSL 206
|
Length = 576 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 5e-18
Identities = 106/368 (28%), Positives = 161/368 (43%), Gaps = 60/368 (16%)
Query: 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC--YTSGTT 268
L++VIG SL G + Y L G + PP D+ +I YTSGTT
Sbjct: 150 LLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEF-AWKPPA-DEWQSIALGYTSGTT 207
Query: 269 GTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGF 327
+PKG VL H G + +++ A L VY+ LP+ H N ++
Sbjct: 208 ASPKGVVLHHRGAYLMALSNA-LIWGMNEGAVYLWTLPMFH----CNGWCFTWT------ 256
Query: 328 YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387
+AAL T C IY+ I + T + N NA K
Sbjct: 257 -----------LAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET 305
Query: 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE 447
+ P P R+V M +GA+P P VL + G RVT YG++E
Sbjct: 306 IL---PLP---RVV------------HVMTAGAAP-PPSVLFAMSE-KGFRVTHTYGLSE 345
Query: 448 T---SCLISQLDEGDNLSGHVGSP-NAACEIKLVDVPEMNY--TSEDQPCPR-----GEI 496
T S + + E D+L + NA ++ + + ++ T +P P GEI
Sbjct: 346 TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEI 405
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556
+RG ++ KGY K+ +E +GWFH+GD+G+ P G ++I DR K+I ++ GE I
Sbjct: 406 VMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDII-ISGGENI 463
Query: 557 AAEKIENV 564
++ ++ENV
Sbjct: 464 SSLEVENV 471
|
Length = 567 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 5e-18
Identities = 112/497 (22%), Positives = 174/497 (35%), Gaps = 117/497 (23%)
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+G+ N PE+ ++ A + + V L T A+ + HA Q V L
Sbjct: 57 VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD 116
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVAT 260
V + V +++ L+ R PF PDD+
Sbjct: 117 GLDPGVRVIN--------------------VDSPAWADELAAHRDAEPPFRVADPDDLFM 156
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVM 317
+ +TSGT+G PK +H + + AG L +F P DV Y+S +PL H +N VM
Sbjct: 157 LIFTSGTSGDPKAVRCTHRKV--ASAGVMLAQRFGLGPDDVCYVS-MPLFH----SNAVM 209
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
+G AV G ++ L +A + F R Y YA
Sbjct: 210 ---AGWAVALAAGASIALRRKFSA---SGFLPDVRRYGATYAN----------------- 246
Query: 378 AAYNAKKQAMLSGKNPSPMWD------RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
Y K + + P D R+V+ G+ +P D+ F
Sbjct: 247 --YVGKPLSYVLATPERP--DDADNPLRIVY--------------GNEGAP--GDIARFA 286
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ FG V +G+G TE I++ D G +G + +VD P+ C
Sbjct: 287 RR-FGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVD-PDTG-----TEC 335
Query: 492 PRGEIC----------------VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
P E GP F+GYY D E + G + +GD+
Sbjct: 336 PPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDAD 394
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVY-------GDSFNSALVA- 587
G R + ++ GE + IE + + + VY GD +ALV
Sbjct: 395 GYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLA 453
Query: 588 -IVSVDQDALKAWAASE 603
D DA + A++
Sbjct: 454 PGAKFDPDAFAEFLAAQ 470
|
Length = 529 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 9e-18
Identities = 117/505 (23%), Positives = 185/505 (36%), Gaps = 111/505 (21%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA----------- 157
G +W +Y E + +GL GI +G + N E+ IV A
Sbjct: 45 GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 158 --------CSAY-SFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT 208
+AY S I LY + A ++F L S L PT
Sbjct: 104 LFSHRKSELTAYASQIEPALY--IIDRA----------HSLFDYDDFARQLQSKL---PT 148
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
+R I+V G + L + + + F P K D+VA + G+T
Sbjct: 149 LRNIIVAGQTGEAELFLWLES-----PAEPV---------KFPPTKSDEVAFFQLSGGST 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY 328
GTPK +H + SV + Y+ LP AH N ++ + V FY
Sbjct: 195 GTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAH-----NYPLSSPGALGV-FY 248
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388
G + L D + F L R +T+ V + L AA +K +A L
Sbjct: 249 AGGCVVLAPDPSPT--DCF----PLIERHKVTVTALVPPAVAL---WMQAA--SKSRADL 297
Query: 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET 448
S ++ + G + S + FG ++ + +GM E
Sbjct: 298 SS----------------------LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG 335
Query: 449 SCLISQLDEGDNLSGHV-GSPNAAC-EIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLI 503
++LD+ + G P + E+++VD P GE + RGP
Sbjct: 336 LVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-------DHGNPVAPGETGMLLTRGPYT 388
Query: 504 FKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
F+GYYK D +G+++TGD+ P G + ++ R K+ GE IAAE+IEN
Sbjct: 389 FRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRG-GEKIAAEEIEN 447
Query: 564 VYAKCKFVGQCFVYGDSFNSALVAI 588
+ ++ALV++
Sbjct: 448 ---------LLLAHPAVHDAALVSM 463
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-17
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
V YGMTETS + Q D+L VG E+K+VD + PRGE
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-------PDGATVPRGE 398
Query: 496 I---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552
I C RG + KGY+ + T E IDEDGW HTGD+ G ++I+ R K++ +
Sbjct: 399 IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI-IRG 457
Query: 553 GEYIAAEKIE 562
GE I +IE
Sbjct: 458 GENIYPREIE 467
|
Length = 558 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 6e-17
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G+ W TY E A V + L+ G+ KG + N + ++ AC+ + VP+
Sbjct: 33 GDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPV 91
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
L + + YI++H+ +A P + + L+ +P LI+ L
Sbjct: 92 NFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLIL--------SLVLGGR 143
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
++ S +P DD+A I YTSGT PKGA+L+H LIA
Sbjct: 144 EAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203
Query: 289 TLGTKFYPSDVYISYLPLAH 308
+ D+ + LPL H
Sbjct: 204 IVAGDMSADDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-17
Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 40/254 (15%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
D + + D + VD Y TY A + + + L+ GI G +
Sbjct: 27 DYWQQTARAMPDKIAV-----VDNHGASY---TYSALDHAASRLANWLLAKGIEPGDRVA 78
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS---- 198
E+ I+ AC +SVPL + + +++N + F P
Sbjct: 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-PTLFKQTRPV 137
Query: 199 --LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD 256
+L +++P ++ IV G+D P+ L+ S +++ L D
Sbjct: 138 DLILPLQNQLPQLQQIV---GVDKLAPATSS------LSLSQIIADYEP-LTTAITTHGD 187
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
++A + +TSGT G PKG +L+H N++AS DV++ PL H
Sbjct: 188 ELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH-------- 239
Query: 317 MTVYSGVAVGFYQG 330
A GF G
Sbjct: 240 -------ATGFLHG 246
|
Length = 547 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-16
Identities = 88/389 (22%), Positives = 135/389 (34%), Gaps = 113/389 (29%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG---NLIASVAGATLGTKFYPSDVY---------IS 302
PDD+A + YTSG+TG PKG +SH N + S+A G SD IS
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMA-RRPGLG--ASDRLLAVTTISFDIS 148
Query: 303 ----YLPL---AHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYN 355
LPL A + +A D +L +A R T+ + P +
Sbjct: 149 VLELLLPLLSGATVV------------IASAETVRDPERLARLIADERITIMQATPATWR 196
Query: 356 RIYAGITSAVRTSGGLRERLFNAAYNAKKQ-AMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
L A + ++ L
Sbjct: 197 ------------------MLLAAGWRGRESLTALC------------------------- 213
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAAC 472
G L D+ + L G + YG TET+ +++ D +G P A
Sbjct: 214 ----GGEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANT 267
Query: 473 EIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVI-----DEDG-- 522
++ ++D + QP P GE+ + G + +GY T E D+ G
Sbjct: 268 QVYVLD-------EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGR 320
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF- 581
+ TGD+ W P GRL+ + R + K+ +G I +IE V V
Sbjct: 321 LYRTGDLVRWRPDGRLEYLGRADDQVKI-RGFRIELGEIEAALRAHPGVADAVVVVREEG 379
Query: 582 --NSALVAIV------SVDQDALKAWAAS 602
+ LVA V + D +AL+A +
Sbjct: 380 PGDQRLVAYVVPKAGAAPDAEALRAALRA 408
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-16
Identities = 79/324 (24%), Positives = 120/324 (37%), Gaps = 74/324 (22%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD---VYISYLPLAHIYE 311
PD VA +TSG+TG PK + + + A++A P V + ++P H
Sbjct: 219 PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMG 278
Query: 312 -RANQVMTVYSGVAVGFYQGDNMKLMDDM-----AALR---PTVFCSVPRLYNRIYAGIT 362
AN ++ G G D+ K + M LR PTV+ +VP YA +
Sbjct: 279 GNANFNGLLWGG---GTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPA----GYAMLA 331
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
A+ LR F +R M G +
Sbjct: 332 EAMEKDDALRRSFFK----------------------------------NLRLMAYGGAT 357
Query: 423 LSPDV---LDFLKICFGGR---VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476
LS D+ + L + G GYG TET+ + G +G P E+KL
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKL 417
Query: 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI--- 533
V + + E+ V+GP + GY+KD T DE+G++ GD ++
Sbjct: 418 APVGD-----------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466
Query: 534 -PGGRLKIIDRKKNIFKLAQGEYI 556
P L R FKL+ G ++
Sbjct: 467 DPEKGLIFDGRVAEDFKLSTGTWV 490
|
Length = 624 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-16
Identities = 58/209 (27%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+D G +TY E + +GL G KG + L N E+ +V A +
Sbjct: 25 IDAATGRA--LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGA 82
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
+ P + V + + + L S L+ P V L D
Sbjct: 83 VVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLAS-LALEPVVLL--------DSAD 133
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
+LL P K DDVA + Y+SGTTG KG +L+H NLIA
Sbjct: 134 DGS-------AAIDDLLFADEPEP-PVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA 185
Query: 284 SVAG--ATLGTKFYPSDVYISYLPLAHIY 310
+VA A G F DV + LP+ HIY
Sbjct: 186 NVAQLVAGEGPNFDREDVTLCVLPMFHIY 214
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-16
Identities = 68/303 (22%), Positives = 115/303 (37%), Gaps = 56/303 (18%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD A + +TSGTTG PK + +H + + P D++ + +
Sbjct: 80 ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWS 139
Query: 315 QVMTVY-SGVAVGFYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
+ + G AV Y G D + ++ + T FC+ P Y
Sbjct: 140 SLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY---------------- 183
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
R+ +Q + S +R + S PL+P+V+D+
Sbjct: 184 ---RML------LQQDLSSYDFS------------------HLRHVVSAGEPLNPEVIDW 216
Query: 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G + +GYG TET L++ + G +G P + ++D E N +
Sbjct: 217 WRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIID-DEGNELPPGEE 275
Query: 491 CPRGEICV----RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
G+I V R P +F+GY KD +T+ I W+ TGD + G + R +
Sbjct: 276 ---GDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAIKDEDGYFWFVGRADD 331
Query: 547 IFK 549
+ K
Sbjct: 332 VIK 334
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 5e-16
Identities = 58/166 (34%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-----QLDEGD-----NLS 462
+R + +GA L P+V D + FG R+ EGYG TETS + S L +
Sbjct: 900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVI- 518
G VG P +++VD PE + + P GE I + GP + KGY D +T EVI
Sbjct: 960 GSVGMPLPGVAVRIVD-PE-TF----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013
Query: 519 --DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIE 562
D GW+ TGD G G L I DR K+ GE + +E
Sbjct: 1014 DIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIG-GEMVPLGAVE 1058
|
Length = 1146 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 5e-16
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 35/171 (20%)
Query: 442 GYGMTE---TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
GYG+TE T C D L+G VGSP E+KLVD GEI +
Sbjct: 270 GYGLTEMASTVCA----KRADGLAG-VGSPLPGREVKLVD---------------GEIWL 309
Query: 499 RGPLIFKGYYKD-EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
RG + GY++ ++ +++++GWF T D G W G L I+ R N+F + GE I
Sbjct: 310 RGASLALGYWRQGQLVP--LVNDEGWFATRDRGEWQ-NGELTILGRLDNLF-FSGGEGIQ 365
Query: 558 AEKIENVYAKCKFVGQCFVY--GDS-FNSALVAIV----SVDQDALKAWAA 601
E+IE V + V Q FV D+ F VA+V L W
Sbjct: 366 PEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQ 416
|
Length = 458 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-15
Identities = 102/538 (18%), Positives = 204/538 (37%), Gaps = 68/538 (12%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146
R+V ++ LG GE +W+TYG E+GSGL+ G+ G IG+
Sbjct: 435 RSVTRHSTFRCLGQT----SESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490
Query: 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-E 205
+I++ AC+ Y F ++PL ++ +++ ++ VF ++ ++L+C S +
Sbjct: 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRK 548
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ TV + D+ ++ + ++ Y + +GR P Y
Sbjct: 549 LETV--VYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPL-KEHVTTDTVFTYVV 605
Query: 266 GTTGTPKGAVLS-----HGNLIASVAGATLGTKFYPS----DVYISYLPLAHIYERANQV 316
T + G L+ H +++ ++ + T PS + + + P A ++ R +
Sbjct: 606 DNTTSASGDGLAVVRVTHADVLRDIS-TLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVL 664
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
G AV D L +PT+ + P L++ ++ A + LF
Sbjct: 665 GLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLF 722
Query: 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR--FMGSGASPLSPDVLDFLKIC 434
A+ + + + + S + + F ++ LGG V + S +L+ + +C
Sbjct: 723 ERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVC 782
Query: 435 FGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSE--DQPC 491
+ + L EG + P + E D+P
Sbjct: 783 Y----------VPCLREVFFLPSEG------------VFCVDGTPAPSLQVDLEPFDEPS 820
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI-GMWIPGGRLKIIDRKKNIFKL 550
I G L+ K+ T I W L+++ I
Sbjct: 821 DGAGI---GQLVL---------AKKGEPR----RTLPIAAQWKRDRTLRLLGPPLGILLP 864
Query: 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK-AWAASEGIQV 607
EY+ A ++E ++++ ++V F+Y D + ++AIVS ++D ++ W S +
Sbjct: 865 VAYEYVIAAELERIFSQSRYVNDIFLYADP-SRPIIAIVSPNRDTVEFEWRQSHCMGE 921
|
Length = 1452 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 87/333 (26%), Positives = 130/333 (39%), Gaps = 57/333 (17%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS--DVYISYLPLAHIYER 312
DD A + YTSGTTG PKGA+ H L+ + G L + P DV+ + A I
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGL 146
Query: 313 ANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ ++ +Y GV V Y+ M+ D A + R Y G+T+A L
Sbjct: 147 LDVLLPALYFGVPVVAYR---MQRFDPERAFA------LMRRY-----GVTNAFLPPTAL 192
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
+ G +D R+R + SG L ++L++
Sbjct: 193 K------------MMRRVGS-ERARYDL------------RLRAVASGGESLGEELLEWA 227
Query: 432 KICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G V E YG TE + ++ G G +G P E+ +VD +P
Sbjct: 228 RDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHEVAVVD-------DAGRP 280
Query: 491 CP---RGEICVR--GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
P GEI V+ P++F GY+ + T W TGD+G G L R
Sbjct: 281 VPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF-AGDWLLTGDLGRRDADGYLWFKGRAD 339
Query: 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
++ K + G I +IE K V + V G
Sbjct: 340 DVIKSS-GYRIGPAEIEECLLKHPAVLEAAVVG 371
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNA 470
VR+ +G +P P+ L I G +G+GMTETS + L E D G +G P
Sbjct: 266 VRWFYNGGAP-CPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVL 324
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
C+ +L+D ++ + GE+ +RGP + K Y+ T+E I +DGW TGD+
Sbjct: 325 FCDYELID----ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLA 379
Query: 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
G + I+ RKK + ++ GE I ++E V K V + V G
Sbjct: 380 RVDEDGFVYIVGRKKEMI-ISGGENIYPLEVEQVINKLSDVYEVAVVG 426
|
Length = 496 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166
+ E + MTY + ++V + LIY + KG I + N E++++ A + I+V
Sbjct: 22 ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81
Query: 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226
PL L + + + + + +F N LS + +V V+ ++ I +
Sbjct: 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALS-MQKVSYVQRVISITSL-------- 132
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
+ + N F ICYTSGTTG PKGAVL+ N+ +
Sbjct: 133 ----------KEIEDRKIDN---FVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 287 GATLGTKFYPSDVYISYLPLAHI 309
T D I LPL HI
Sbjct: 180 NNTFAIDLTMHDRSIVLLPLFHI 202
|
Length = 496 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-15
Identities = 109/508 (21%), Positives = 188/508 (37%), Gaps = 121/508 (23%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
GE K T+G+ + + GI KG + L R E+ A I++P
Sbjct: 43 GEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPA 102
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIG---------- 216
L + Y + A ++ + C+ + + E + L+V++G
Sbjct: 103 THMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDF 162
Query: 217 --GIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274
I++ P TG DD+ + +TSGTTG PK
Sbjct: 163 DKEIENASPDFERPTGN-------------------DATCNDDILLVYFTSGTTGMPK-- 201
Query: 275 VLSHGNLIASVAGATLGTKFY----PSDVYISYLPL-------AHIYERANQVMTVYSGV 323
++ H + G + K++ ++++ +Y Q + +G
Sbjct: 202 MVEHDHTYP--LGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLY---GQWI---AGA 253
Query: 324 AVGFYQGDNM---KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
AV Y D L++ + T FC+ P +Y R ++E L
Sbjct: 254 AVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL------------IKEDLSKYDL 300
Query: 381 NAKKQAMLSGK--NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
++ + +G+ NP VFN K+K G ++
Sbjct: 301 SSLRYCTTAGEPLNPE------VFNTFKEKTGIKLM------------------------ 330
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
EG+G TET+ I+ + G +G P+ +I ++D + + C GE
Sbjct: 331 --EGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID-------PDGKSCEVGEEGE 381
Query: 496 ICVR----GPL-IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550
I +R PL +F GYY+D +T EV DG++HTGD G L + R ++ K
Sbjct: 382 IVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAWMDEDGYLWFVGRADDLIKS 440
Query: 551 AQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ G I ++E+ + V +C V G
Sbjct: 441 S-GYRIGPFEVESALIQHPAVLECAVTG 467
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 5e-15
Identities = 109/470 (23%), Positives = 176/470 (37%), Gaps = 91/470 (19%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
+ + LI I+K + + N P + A + P+ L ++ I+ HA
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 186 VQAVFC------VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ +F + + + LLS + ++ I ID P + L Y L
Sbjct: 112 PKILFVDRSFEPLAREVLHLLSSEDSNLNLP-VIFIHEID-----FPKRPSSEELDYECL 165
Query: 240 LSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295
+ +G + F D ++ YTSGTT PKG V+SH S A +G +
Sbjct: 166 IQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMG 225
Query: 296 PSDVYISYLPLAH---------IYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
VY+ LP+ H R + + A Y+ M + M
Sbjct: 226 TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHM------- 278
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
C VP ++N + G + + SP
Sbjct: 279 -CCVPTVFNILLKG----------------------------NSLDLSPR---------- 299
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI---SQLDEGDNLSG 463
G V + G+ P P L G +V YG+TE + + DE + L
Sbjct: 300 ---SGPVHVLTGGSPP--PAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE 354
Query: 464 H----VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQT 514
+ + + + L DV N + PR GEI ++G I KGY K+ T
Sbjct: 355 NQQMELKARQGVSILGLADVDVKN-KETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
E + GW +TGD+G+ P G ++I DR K+I ++ GE I++ ++ENV
Sbjct: 414 SEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDII-ISGGENISSVEVENV 461
|
Length = 579 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-15
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 25/144 (17%)
Query: 435 FGGRVTEGYGMTETSC-LISQLDEGDNLSGH-----VGSPNAACEIKLVDVPEMNYTSED 488
FG R+ YGMTET +I GD +G P E ++ D +
Sbjct: 311 FGVRLLTSYGMTETIVGII-----GDRPGDKRRWPSIGRPGFCYEAEIRDD-------HN 358
Query: 489 QPCPR---GEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
+P P GEIC++G IFK YY D T +V++ DGW HTGD G G +D
Sbjct: 359 RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVD 418
Query: 543 RKKNIFKLAQGEYIAAEKIENVYA 566
R+ N+ K GE ++ ++EN+ A
Sbjct: 419 RRCNMIKRG-GENVSCVELENIIA 441
|
Length = 517 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 8e-15
Identities = 66/283 (23%), Positives = 99/283 (34%), Gaps = 67/283 (23%)
Query: 69 VSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
V+RFPD + H R T+ + A +
Sbjct: 28 VARFPDREALVVRH---------------QALR------------YTWRQLADAVDRLAR 60
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
GL+ G+ G +G++ N EWL+ A + I V + ++Y + + V+
Sbjct: 61 GLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRW 120
Query: 189 VFCVP--------QTLNSLLSCLSE----------VPTVRLIVVIGGIDDQIPSLPITTG 230
V C L LL L+E +P +R +V + G
Sbjct: 121 VICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--------PPG 172
Query: 231 VQILTYSNLLSQG----RSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI--A 283
L + L ++G R L DD I YTSGTTG PKGA LSH N++
Sbjct: 173 --FLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNG 230
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
+LG D +PL H + V+ + VG
Sbjct: 231 YFVAESLG--LTEHDRLCVPVPLYHCF---GMVLANLGCMTVG 268
|
Length = 558 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 1e-14
Identities = 113/539 (20%), Positives = 173/539 (32%), Gaps = 159/539 (29%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
+TY E + L G+ G + L PE ++ + A +AY VPL
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPLD 68
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
+ + +++ A LL+ S P R + I ++
Sbjct: 69 PAYPAERLAFML--EDSGARV--------LLTDESLAPLARADQLPLVILEEEL------ 112
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DD+A + YTSG+TG PKG + H V
Sbjct: 113 ------------DAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPH----RGVVRLV 156
Query: 290 LGTKFY---PSDVYISYLPLA------------------HIYERANQVMTVYSGVAVGFY 328
T + P D ++ PL+ + ++
Sbjct: 157 RNTNYIALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKE--------------- 201
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN--AAYNAKKQA 386
+ D L RL G+T T+ LFN +
Sbjct: 202 ------TLLDPDRLA--------RLIAE--QGVTVLWLTAA-----LFNQLVDEDP---E 237
Query: 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD-VLDFLKICFGGRVTEGYGM 445
L+G +R + G LSP V L C G R+ GYG
Sbjct: 238 ALAG----------------------LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGP 275
Query: 446 TE----TSC-LISQLDEGDNLSGHV--GSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
TE ++C +I++LDE + G P + ++D E QP P GE
Sbjct: 276 TENTTFSTCHVITRLDEAA---DSIPIGRPIPNTTVYILD-------EEGQPVPIGVPGE 325
Query: 496 ICVRGPLIFKGYYKDEIQTKEVIDED----G--WFHTGDIGMWIPGGRLKIIDRKKNIFK 549
+ V G + GY T E D G + TGD+ W P G ++ + R K
Sbjct: 326 LYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVK 385
Query: 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNS---ALVAIVS----VDQDALKAWAA 601
+ +G I +IE + V + V + LVA V +D L+A A
Sbjct: 386 I-RGFRIELGEIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAAELRAHLA 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 104/498 (20%), Positives = 182/498 (36%), Gaps = 88/498 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++YGE +G+ L G+ + + L ++ ++ I + V L L
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D Y++ + + VF + L + + L + P + VV+G + L
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQL-------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATL 290
+ LL+ +P + + DD A Y+SG+TG PKG V +H N + A TL
Sbjct: 143 ---AELLATESEQFKP-AATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQV---MTVYSGVAVGFYQGDNMKLMDDMAALRPTVF 347
G + DV S L Y N + M+V + + + + D + +PT+F
Sbjct: 199 GIR--EDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIF 256
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
VP LY AML+ N +
Sbjct: 257 YGVPTLY------------------------------AAMLADPN------------LPA 274
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+ R+R S L +V + FG + +G G TE + GD G G
Sbjct: 275 EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGK 334
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P ++LV + +P GE+ + GP Y+ + +T++ + W +G
Sbjct: 335 PVPGYRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTF-QGEWTRSG 389
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVA 587
D + G R ++ K++ G Y++ +IE SAL+
Sbjct: 390 DKYVRNDDGSYTYAGRTDDMLKVS-GIYVSPFEIE--------------------SALIQ 428
Query: 588 IVSVDQDALKAWAASEGI 605
+V + A+ +G+
Sbjct: 429 HPAVLEAAVVGVEDEDGL 446
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 2e-14
Identities = 72/344 (20%), Positives = 115/344 (33%), Gaps = 61/344 (17%)
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH--GNLIASVAGATLGTK 293
+ + YT+GTTG PKG V SH L + A GT
Sbjct: 133 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 192
Query: 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVP 351
DV + +P+ H+ T+ V + + + T VP
Sbjct: 193 LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 252
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
++ + + +L
Sbjct: 253 TVWLALA----------------------DYL-------------------ESTGHRLKT 271
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCL------ISQLDEGDN 460
R + G++ P L G V +GYG+TE +E
Sbjct: 272 LRRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 329
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
L G P +++ D E +D E+ ++GP I GYY +E T+ +
Sbjct: 330 LKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALG-EVQLKGPWITGGYYGNEEATRSALTP 387
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
DG+F TGDI +W G ++I DR K++ K GE+I++ +EN
Sbjct: 388 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSG-GEWISSVDLENA 430
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+F AV D L T R G + +Y E + GL G+ +G
Sbjct: 23 TINDHFDAAVANCPDKPAL-TAYRDGH--GAVRRFSYRELDCRVDRIAVGLARLGVGRGD 79
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS- 198
+ NR E+ + AC+ + PL + +++NHA + VF VP
Sbjct: 80 VVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSK-VFVVPSVFRGF 138
Query: 199 -----LLSCLSEVPTVRLIVVIGGI-DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S++P +R +VVI G DD + +T + + G
Sbjct: 139 DHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAG-------PR 191
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
P PDDV + YTSGTTG PKG + + L +++ + DV + P+AH
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 93/505 (18%), Positives = 162/505 (32%), Gaps = 91/505 (18%)
Query: 128 SGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQ 187
+ L G+ +G + ++ N EW+++ AC+ + + V +I+ +
Sbjct: 50 AWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRAR 109
Query: 188 AVFCVPQ----TLNSLLSCL--SEVPTVRLIVVIGGIDDQIPS-LPITTGVQILTYSNLL 240
+ P ++L+ + +P +R I V+ D P+ P
Sbjct: 110 WLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAP 169
Query: 241 SQGRSNLQPFSPPKPDDVATICYT-SGTTGTPK------GAVLSHGNLIASVAGATLGTK 293
D + +T SGTT PK +L H IA G
Sbjct: 170 PAAAG-----ERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYG------ 218
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRL 353
+ P V ++ LP ++ +S + G + VF +
Sbjct: 219 YDPGAVLLAALPFCGVFG--------FSTLLGALAGGAPLVCEP--------VFDAARTA 262
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+T LR R+ + A P
Sbjct: 263 RALRRHRVTHTFGNDEMLR-RILDTAGERA---------DFP----------------SA 296
Query: 414 RFMGSGA-SPLSPDVLDFLKICFGGRVTEG-YGMTETSCLISQLDEGDNLS------GHV 465
R G + +P ++ G G YG +E L++ D +S G
Sbjct: 297 RLFGFASFAPALGELAALA--RARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRP 354
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
SP A ++ D + + + GEI +R P + +GY + T + +DG+F
Sbjct: 355 ASPEA--RVRARDPQDGALLPDGES---GEIEIRAPSLMRGYLDNPDATARALTDDGYFR 409
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NS 583
TGD+G G+ R + +L G + +IE+ V V G + +
Sbjct: 410 TGDLGYTRGDGQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468
Query: 584 ALVAIV------SVDQDALKAWAAS 602
VA V S D+ L A
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACRE 493
|
Length = 540 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 441 EGYGMTETSCLISQLDEGDNLSGHV---GSPNAACEIKLVDVPEMNYTSEDQPCPRGEIC 497
YG TE S + ++ D LS + G A EIK+VD P GE
Sbjct: 331 SVYGSTE-SSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD----EARKTLPPGCEGEEA 385
Query: 498 VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
RGP +F GY + T +DE+GW+++GD+ G +KI RKK+I + GE I+
Sbjct: 386 SRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII-VRGGENIS 444
Query: 558 AEKIENVYAKCKFVGQCFVYG 578
+ ++E++ + + V
Sbjct: 445 SREVEDILLQHPKIHDACVVA 465
|
Length = 547 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 8e-14
Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 46/226 (20%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
R + D + L V D +W TY E + GL+ GI KG +G
Sbjct: 20 QLLDRTAARYPDREAL---VYRDQ---GLRW-TYREFNEEVDALAKGLLALGIEKGDRVG 72
Query: 143 LYFVNRPEWLIVDHACSAYSFISV---PLYDTLGPDAVKYIVNHASVQAVFCVP------ 193
++ N PEW++ A + I V P Y ++Y +N + +A+
Sbjct: 73 IWAPNVPEWVLTQFATAKIGAILVTINPAYRL---SELEYALNQSGCKALIAADGFKDSD 129
Query: 194 --QTLNSLLSCL----------SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
L L L + +P +R ++ +G D++ P + L + LL+
Sbjct: 130 YVAMLYELAPELATCEPGQLQSARLPELRRVIFLG--DEKHPGM--------LNFDELLA 179
Query: 242 QGRSN----LQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI 282
GR+ L PDD I YTSGTTG PKGA L+H N++
Sbjct: 180 LGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 88/332 (26%), Positives = 124/332 (37%), Gaps = 63/332 (18%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV-AGATLGTKFYPSDVYISYLPLAHIYER 312
DDVA I +TSGTTG PKG + H +++A A + P DV+I PLA +
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204
Query: 313 ANQVM-TVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
V+ + G AV Q L+ + R T+ + P Y
Sbjct: 205 GGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYR--------------- 249
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
AML K+K +R S L V
Sbjct: 250 ---------------AML--------------IKVKAFDISSLRKCVSAGETLPAKVWQD 280
Query: 431 LKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
G ++ +G G TE IS +E + G G P E ++VD +
Sbjct: 281 WYERTGLKIIDGIGATEMLHIFISANEE-NAKPGATGKPVPGYEARIVD-------DQGN 332
Query: 490 PCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
PRGE + VRGP + Y DE Q + V DGW TGDI G + R +
Sbjct: 333 EVPRGEAGRLAVRGPTGCR-YLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVARSDD 389
Query: 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ ++ G IAA ++E+ V +C V G
Sbjct: 390 MI-VSAGYNIAAPEVEDALLTHPDVAECAVIG 420
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 65/303 (21%)
Query: 43 YSVVLPEKLDTGKW-NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR 101
S+ LPE T + N+ S+R R+PD I + G
Sbjct: 3 KSLTLPE---TSLFHNLEVSAR-------RYPDKTAI-----------------VFYGRA 35
Query: 102 VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH--GISKGSCIGLYFVNRPEWLIVDHACS 159
+ +Y E E +G + G+ KG + LY N P+++I +A
Sbjct: 36 I------------SYREL-LEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82
Query: 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVV-IGGI 218
+ + VP+ + + + V + + + + + + +IV
Sbjct: 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDY 142
Query: 219 DDQIPSLPITTGVQ------------ILTYSNLLSQGRSNLQPFSPP---KPDDVATICY 263
P + + ++ ++ + L+ G L P PP PDD+A + Y
Sbjct: 143 LPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAG---LAP--PPHTAGPDDLAVLPY 197
Query: 264 TSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT-VYSG 322
TSGTTG PKG + +H ++A+ G+ L + P V ++ LPL H+ + + +Y+G
Sbjct: 198 TSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAG 257
Query: 323 VAV 325
V
Sbjct: 258 ATV 260
|
Length = 546 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 28/200 (14%)
Query: 114 MTYGE-AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
+TY E AR + + L G + G + L +++ C I+VP
Sbjct: 24 LTYAELDRRAR-AIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPR 81
Query: 173 GP----DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ I+ A +AV L +L + L+ + L+++ D + +L
Sbjct: 82 RLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIA---ADDLAALAAA 138
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
PP PDD+A + YTSG+TG PKG +++HGNL+A++
Sbjct: 139 DW------------------RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI 180
Query: 289 TLGTKFYPSDVYISYLPLAH 308
P DV +S+LPL H
Sbjct: 181 ARAFGLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 7e-13
Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 30/242 (12%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+ V + D K T VR+ G + TY E V GL G+ +G
Sbjct: 25 TINDDLDACVASCPD-KTAVTAVRLGT--GAPRRFTYRELAALVDRVAVGLARLGVGRGD 81
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-- 197
+ N E+ ++ ACS + PL + +++ HA V VP+T
Sbjct: 82 VVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAE-SKVLVVPKTFRGF 140
Query: 198 ---SLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP- 252
++ L E+P +R +VV+GG ++ LL +P +P
Sbjct: 141 DHAAMARRLRPELPALRHVVVVGGDGAD-------------SFEALLITPAWEQEPDAPA 187
Query: 253 ------PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306
P PDDV + YTSGTTG PKG + + L+A++ DV + P+
Sbjct: 188 ILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM 247
Query: 307 AH 308
AH
Sbjct: 248 AH 249
|
Length = 547 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 8e-13
Identities = 46/123 (37%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 436 GGRVTEG-YGMTETSCLIS-----QLDEGDNLSG--HVGSPNAACEIKLVDVPEMNYTSE 487
G + E +GMTET + Q D+ D LS VG P E K+ D T E
Sbjct: 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE----TGE 407
Query: 488 DQPC-PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546
P GEI VR P + KGY+ T E + DGW HTGDIG G L + R+K
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKE 466
Query: 547 IFK 549
+ K
Sbjct: 467 MLK 469
|
Length = 567 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 9e-13
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L GR L F PDD A I +TSG+ GTPKG VLSH NL+A+ A F P D
Sbjct: 777 LLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDK 836
Query: 300 YISYLPLAHIYE-RANQVMTVYSGVAVGFY 328
+ LP+ H + V+ + SGV V Y
Sbjct: 837 VFNALPVFHSFGLTGGLVLPLLSGVKVFLY 866
|
Length = 1140 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI KG + L+ N PE++ + I VP+ L + +I+ ++ +
Sbjct: 58 GIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSA 117
Query: 194 QTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
Q E T +R I + +LP GV +++ L +Q + L P
Sbjct: 118 QFYPMYRQIQQEDATPLRHICLTR------VALPADDGV--SSFTQLKAQQPATLCYAPP 169
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
DD A I +TSGTT PKG V++H NL + + DVY++ +P HI +
Sbjct: 170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQ 229
Query: 313 ANQVMTVYS 321
M +S
Sbjct: 230 CTAAMAAFS 238
|
Length = 517 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 435 FGGRVTEGYGMTETSCL--ISQL-DEGDNLSGHV--------GSPNAACEIKLVDVPEMN 483
G V +GMTE S L ++ L L G G P E+K+ D
Sbjct: 317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD----- 371
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P G + VRGP + YY+ + E++D+DG+F TGD+ G +
Sbjct: 372 --DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYM 426
Query: 539 KIIDRKKNIFKLAQGEYIAAEKIENV 564
+I DR K++ K + GE+I++ +EN+
Sbjct: 427 RITDRSKDVIK-SGGEWISSIDLENL 451
|
Length = 542 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 68/317 (21%), Positives = 115/317 (36%), Gaps = 52/317 (16%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD+ YTSGTTG PKG + L A A DV+ +
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWN------------ 134
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G A G Y + +A TVF + G T+ R
Sbjct: 135 ---IADPGWAYGLY----YAITGPLAMGITTVF---------LEGGFTAENTYDVLERLG 178
Query: 375 LFNAAYNAKK-QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
+ N A + + +++ + + ++R S PL+P+V+ + +
Sbjct: 179 VTNFAGSPTAYRMLMAAGADAAARIK-----------LKLRVASSAGEPLNPEVVRWFQA 227
Query: 434 CFGGRVTEGYGMTETSCLISQL--DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
G + + YG TET + + +G +G P I ++D + ++ +P
Sbjct: 228 NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEP- 285
Query: 492 PRGEICVR----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
G++ + L F GY+ D +T E+I W+ TGD+ G I R ++
Sbjct: 286 --GQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLVERDEDGYFWFIGRADDV 342
Query: 548 FKLAQGEYIAAEKIENV 564
A G I +E+
Sbjct: 343 IISA-GYRIGPFDVESA 358
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 419 GASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIK 475
GAS + +VL L+ G R YG TE + L + L ++L G G P E +
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETR 353
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
+VD + N + + GEI R P + GY+ D +T E GWFH+GD+G+
Sbjct: 354 VVD-DDGNDVAPGEV---GEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE 408
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G + ++DRKK++ K GE +A+ ++E
Sbjct: 409 GYITVVDRKKDMIKTG-GENVASREVEEA 436
|
Length = 523 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC--LISQLDEGDNLSGHVGSPNAA 471
F+ +GA P+ +++ + G ++ +GMTE L D + S G P
Sbjct: 316 TFLCAGA-PIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPG 374
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P P G+I VRG F GY K D DGWF TGD
Sbjct: 375 VEVRVVD-------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGD 425
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+ G ++I R K++ + GE I +IE +
Sbjct: 426 LARIDADGYIRISGRSKDVI-IRGGENIPVVEIEAL 460
|
Length = 547 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 86/378 (22%), Positives = 127/378 (33%), Gaps = 70/378 (18%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHIY 310
PK DD A I +TSG+TG PKG V +H A + L + + D ++ P ++
Sbjct: 82 PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQID--ALRSLYGIREGDRDLAAFPPFALF 139
Query: 311 ERANQVMTVYSGVAVGF-YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
A V TV + D KL + + + P L +
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEENGIQLP 199
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
LR +LS P P D L V + A +P
Sbjct: 200 SLRR-------------VLSAGAPVP----------PDLLRRFVANLMPEAEIHTP---- 232
Query: 430 FLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH-----------VGSPNAACE---I 474
YG TE L ++ ++ + L+ VG P + I
Sbjct: 233 -------------YGATE--ALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRII 277
Query: 475 KLVDVP--EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK-EVIDED--GWFHTGDI 529
+ D P + E P GEI V GP + + YY TK I + W GD+
Sbjct: 278 PIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDL 337
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DSFNSALVA 587
G + GRL RK + + A G + +E V+ + V + + G A V
Sbjct: 338 GYFDDQGRLWFCGRKAHRVETAGG-TLFTVPVEQVFNRHPGVRRSALVGVGKPGTQAPVL 396
Query: 588 IVSVDQDALKAWAASEGI 605
+V L EG
Sbjct: 397 VVEPMPPVLDRRKRLEGR 414
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 113/461 (24%), Positives = 174/461 (37%), Gaps = 122/461 (26%)
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC 202
L F + P+++ C I+VP Y P++ + LLS
Sbjct: 69 LLFPSGPDYVAAFFGCLYAGVIAVPAYP---PESAR--------------RHHQERLLSI 111
Query: 203 LSEVPTVRLIVVIGGIDD---QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP-KPDDV 258
+++ RL++ + + D Q+ L ++L L Q P +PDD+
Sbjct: 112 IADAEP-RLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAEAWQ--EPALQPDDI 168
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIAS--VAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
A + YTSG+T PKG +SHGNL+A+ + G P DV +S+LPL H
Sbjct: 169 AFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHD------- 221
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP-RLYNRI--YAGITSAVRTSGG--- 370
M + G+ + G LM P F P R I Y G SGG
Sbjct: 222 MGLIGGLLQPIFSGVPCVLMS------PAYFLERPLRWLEAISEYGGT-----ISGGPDF 270
Query: 371 ----LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
ER+ +A L + S RV + SG+ P+ D
Sbjct: 271 AYRLCSERVSESA--------LERLDLS---------------RWRVAY--SGSEPIRQD 305
Query: 427 VLDFLKICFGG------RVTEGYGMTETSCLIS-----------QLDEGDNLSGHV---- 465
L+ F YG+ E + +S +LD + L+ +
Sbjct: 306 SLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPALELD-AEALARNRAEPG 364
Query: 466 -GSPNAAC-------EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD-EIQTKE 516
GS +C + +VD + +++ GEI GP I GY+++ E K
Sbjct: 365 TGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRV---GEIWASGPSIAHGYWRNPEASAKT 421
Query: 517 VIDEDG--WFHTGDIGMWIPG-----GRLK--IIDRKKNIF 548
++ DG W TGD+G G GRLK +I R N++
Sbjct: 422 FVEHDGRTWLRTGDLGFLRDGELFVTGRLKDMLIVRGHNLY 462
|
Length = 4334 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 94/377 (24%), Positives = 143/377 (37%), Gaps = 87/377 (23%)
Query: 229 TGVQIL-----TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
GV++L Y+ L+ L P D + +TSGTTG PK SHG L
Sbjct: 119 PGVRVLDVDTPAYAELV-AAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLA- 176
Query: 284 SVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
AG L +F DV Y+S +PL H +N VM +G A G + L +
Sbjct: 177 -FAGRALTERFGLTRDDVCYVS-MPLFH----SNAVM---AGWAPAVASGAAVALPAKFS 227
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA--MLSGKNPSPMWD 398
A F R Y Y FN Y K A + + + P +
Sbjct: 228 ASG---FLDDVRRYGATY-----------------FN--YVGKPLAYILATPERPDDADN 265
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458
L RV F G+ ASP D+ +F + FG +V +GYG +E + ++ + E
Sbjct: 266 PL-----------RVAF-GNEASP--RDIAEFSRR-FGCQVEDGYGSSEGAVIVVR--EP 308
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR----------------GEICVR-GP 501
G +G A + + + PE C GE+ G
Sbjct: 309 GTPPGSIGRG--APGVAIYN-PETL-----TECAVARFDAHGALLNADEAIGELVNTAGA 360
Query: 502 LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKI 561
F+GYY + T E + G + +GD+ G + R + ++ GE ++A I
Sbjct: 361 GFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRV-DGENLSAAPI 418
Query: 562 ENVYAKCKFVGQCFVYG 578
E + + + + VY
Sbjct: 419 ERILLRHPAINRVAVYA 435
|
Length = 540 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 87/324 (26%), Positives = 125/324 (38%), Gaps = 68/324 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY---PSDVYISYLPLAHIYE 311
P+DVA I +TSGT PKG L+H NL+A+ A L KF+ DV +S+LP H Y
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLAN-QRACL--KFFSPKEDDVMMSFLPPFHAY- 237
Query: 312 RANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
GF N + + + P VF P +I I A T G
Sbjct: 238 --------------GF----NSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGS 279
Query: 372 RERLFNAAYN-AKKQAMLSGKNPSPMWDRLVF---NKIKDKLGGRVRFMGSGASPLSPDV 427
F+ AKKQ R V + KD L A P +
Sbjct: 280 TPVFFDYILKTAKKQ------ESCLPSLRFVVIGGDAFKDSL-------YQEALKTFPHI 326
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTS 486
++ +GYG TE S +I+ VG P ++ +V S
Sbjct: 327 ----------QLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIV--------S 368
Query: 487 EDQ--PCPRGE---ICVRGPLIFKGYY-KDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
E+ P GE + RG +F GY +D Q + + W+ TGD+G G L +
Sbjct: 369 EETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL 428
Query: 541 IDRKKNIFKLAQGEYIAAEKIENV 564
R K+ E ++ E +E++
Sbjct: 429 KGRLSRFVKIG-AEMVSLEALESI 451
|
Length = 539 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 6e-11
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 15/163 (9%)
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452
P +W + + + R+R S PL+P+V++ +K +G + +GYG TET+ +I
Sbjct: 182 PPTVWRMFIQQDL-AQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMI 240
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR---GPL-IFKG 506
G +G P + L+D E + P GEI + P+ + G
Sbjct: 241 GNSPGQKVKPGSMGRPLPGYRVVLLD-------DEGKEIPVTEGEIALDLGDRPIGLMLG 293
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549
Y D +T G++ TGD G L + R ++FK
Sbjct: 294 YMGDPEKTAAAFR-GGYYRTGDKAYRDEDGYLWFVGRADDVFK 335
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 11/189 (5%)
Query: 114 MTYGEAGTARTE-VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
+TY E R + LI G+ G +G+Y NR E++ + V +
Sbjct: 29 LTYAEL-EERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRY 87
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D ++Y+++ + A+ + + L +P +R +VV+ LP V
Sbjct: 88 VEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVED-GSGNDLLP--GAV- 143
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLG 291
Y + L+ G S + F PDD+ + YT GTTG PKG + ++ + G
Sbjct: 144 --DYEDALAAG-SPERDFGERSPDDLYLL-YTGGTTGMPKGVMWRQEDIFRVLLGGRDFA 199
Query: 292 TKFYPSDVY 300
T D
Sbjct: 200 TGEPIEDEE 208
|
Length = 533 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 30/186 (16%)
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV--------GSPN 469
G S + P ++ + +G V +GMTETS + + +SG G
Sbjct: 305 VGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFP 364
Query: 470 AACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT----------KEVI 518
A+ E ++V+ + M T ++ GEI VRG + YY + ++V
Sbjct: 365 ASLEYRIVNDGQVMESTDRNE----GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVE 420
Query: 519 D------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG 572
D DGW TGD+G G L I DR +++ + + GE+I + ++EN V
Sbjct: 421 DANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIR-SGGEWIYSAQLENYIMAAPEVV 479
Query: 573 QCFVYG 578
+C V G
Sbjct: 480 ECAVIG 485
|
Length = 576 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 443 YGMTETSCLISQLDEGD----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI-- 496
+GM E ++LD+ D G SP+ E+ + D ++ P P+GE+
Sbjct: 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDD--EVWVAD-------ADGNPLPQGEVGR 382
Query: 497 -CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ--- 552
RGP F+GYYK D +G++ +GD+ P G + ++ R+K+ Q
Sbjct: 383 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKD-----QINR 437
Query: 553 -GEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAI 588
GE IAAE+IEN+ + + ++ALV++
Sbjct: 438 GGEKIAAEEIENLLLR---------HPAVIHAALVSM 465
|
Length = 536 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
+R++ +GA + + FG R+ EGYG+TET+ +I+ N +G VG
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGI 968
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
E +L VP ++ G + VRGP + GY + E DGW+ TGDI
Sbjct: 969 EYRLEPVPGID--------EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTI 1020
Query: 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
G + I R K K+A GE I+ +E
Sbjct: 1021 DEEGFITIKGRAKRFAKIA-GEMISLAAVEE 1050
|
Length = 1140 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + +I+NHA + V + L ++P+V VV+ +P TT
Sbjct: 98 LFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAA----HMPQTTLK 153
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-----LIASVA 286
+ Y +++ + + + + A +CYTSGTTG PKG + SH + L+A+
Sbjct: 154 NAVAYEEWIAEADGDFAWKTFDE-NTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNG 212
Query: 287 GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
A LGT +D + +PL H AN +S ++G
Sbjct: 213 DA-LGTS--AADTMLPVVPLFH----ANSWGIAFSAPSMG 245
|
Length = 542 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 76/349 (21%), Positives = 121/349 (34%), Gaps = 81/349 (23%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATLGTKFYPSDVYISYLPL 306
P +P+ A + YTSGTTG PKGAV+ + V G + +V + +PL
Sbjct: 145 EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPL 204
Query: 307 AHIYERANQVMTVYSGVAVG-------------FYQGDNMKLMDDMAALRPTVFCSVPRL 353
H+ + V V F D +KL++ R T + P
Sbjct: 205 YHVIG--------FFAVLVAALALDGTYVVVEEFDPADALKLIE---QERVTSLFATPTH 253
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+ + A A L F A M P + +R
Sbjct: 254 LDALAAAAEGAPLKLDSLEHVTFAGA------TM-----PDAVLER-------------- 288
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473
+ G YG TE ++ L D +G P E
Sbjct: 289 -----------------VNQHLPGEKVNIYGTTEA---MNSLYMRDPRTGTEMRPGFFSE 328
Query: 474 IKLVDVPEMNYTSEDQPCPRGE----ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
+++V + S D+ P GE + F GY T E + +DGW+ T D+
Sbjct: 329 VRIVRIGG----SPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDV 383
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
+ P G ++I+ R ++ ++ GE I ++E V + V + V G
Sbjct: 384 AVVDPSGTVRILGRVDDMI-ISGGENIHPSEVERVLGRAPGVTEVVVIG 431
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 51/188 (27%), Positives = 69/188 (36%), Gaps = 57/188 (30%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFG------GRVTEGYGMTETSCLIS---------- 453
R +GA P+ D L+ F + F YG+ E + +S
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE-RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVV 328
Query: 454 -QLDEGDNLSGHV----------------GSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
++D G G P E+++VD PE +P P
Sbjct: 329 LRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PETR-----RPLPDGEV 382
Query: 494 GEICVRGPLIFKGYYKDEIQTKEV------IDEDGWFHTGDIGMWIPG-----GRLK--I 540
GEI VRGP + GY+ T E DE GW TGD+G G GRLK I
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGELYVTGRLKDLI 442
Query: 541 IDRKKNIF 548
I R +N +
Sbjct: 443 IIRGRNHY 450
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 86/380 (22%), Positives = 135/380 (35%), Gaps = 82/380 (21%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSD 298
L + +P P I TSGTTGTPKGA S G A L T + +
Sbjct: 182 LIAAHAGQRP--EPTGRKGRVILLTSGTTGTPKGARRS-GPGGIGTLKAILDRTPWRAEE 238
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLY 354
+ P+ H + + V+ + F + L+D R T VP ++
Sbjct: 239 PTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLID---RHRATGLAVVPVMF 295
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR-V 413
+RI + +++++ GR +
Sbjct: 296 DRIMD-----------------------------------------LPAEVRNRYSGRSL 314
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNA 470
RF + S + PDV+ FG + Y TE +I+ D L G P
Sbjct: 315 RFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAG-MIATATPAD-LRAAPDTAGRPAE 372
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
EI+++D + + P GE I VR F GY TK+ DG+ +G
Sbjct: 373 GTEIRILD-------QDFREVPTGEVGTIFVRNDTQFDGYTSG--STKDFH--DGFMASG 421
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSA 584
D+G GRL ++ R + ++ GE + ++E A V + V G + +
Sbjct: 422 DVGYLDENGRLFVVGRDDEMI-VSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQR 480
Query: 585 LVAIV------SVDQDALKA 598
L A V S + LK
Sbjct: 481 LAAFVVLKPGASATPETLKQ 500
|
Length = 537 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV-GSP-NAA 471
R + G + LS + + G ++ + +GM E ++LD+ + H G P +
Sbjct: 308 RLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPD 367
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P GE+ RGP +GYY+ D DG++ +GD
Sbjct: 368 DEVRVVD-------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGD 420
Query: 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIEN 563
+ P G L + R K+ GE IAAE++EN
Sbjct: 421 LVRRDPDGYLVVEGRVKDQINRG-GEKIAAEEVEN 454
|
Length = 542 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 232 QILTYSNLLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--- 287
Q + + L QGR +L+P P DD+A + YT GTTG KGA+L+HGNL+A++
Sbjct: 183 QAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRA 241
Query: 288 --ATLGTKFYP-----SDVYISYLPLAHIY 310
+ LG P +V I+ LPL HIY
Sbjct: 242 CLSQLGPDGQPLMKEGQEVMIAPLPLYHIY 271
|
Length = 562 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 67/280 (23%), Positives = 109/280 (38%), Gaps = 54/280 (19%)
Query: 347 FCSVPRLYNRIYAGITSAVR--TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
FC +P LY+ +G+ +R +GG +L Y K NPS + LV +
Sbjct: 164 FCVLP-LYH--VSGLMQFMRSFLTGG---KLVILPYKRLKSGQELPPNPSDFFLSLVPTQ 217
Query: 405 IKDKLGGRVRFMGS------GASPLSPDVLD---FLKICFGGRVTEGYGMTETSCLISQL 455
++ L R +++ G +P P +L+ L++ R+ YGMTET+ I+ L
Sbjct: 218 LQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQL----RLAPTYGMTETASQIATL 273
Query: 456 DEGDNLSGHVGS----PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE 511
D L+G+ S P+A I G I ++ + GYY
Sbjct: 274 KPDDFLAGNNSSGQVLPHAQITIP--------------ANQTGNITIQAQSLALGYY--- 316
Query: 512 IQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFV 571
+++D G F T D+G G L I+ R + GE + ++E V
Sbjct: 317 ---PQILDSQGIFETDDLGYLDAQGYLHILGRNSQKI-ITGGENVYPAEVEAAILATGLV 372
Query: 572 GQCFVYG--DS-FNSALVAIV-----SVDQDALKAWAASE 603
V G D + + AI S+ + LK +
Sbjct: 373 QDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQ 412
|
Length = 452 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-09
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYG+ + G+ G + L +NRPE L+ A L+
Sbjct: 38 LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97
Query: 174 PDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D Y++ A + + P + L+ L+ VP+++ ++ +G P+ GV
Sbjct: 98 LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLG---------PVPDGVD 148
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292
+L + G + L + P D+A + YT GTTG PKG + +H + IA++A L
Sbjct: 149 LLAAAA--KFGPAPLVAAA--LPPDIAGLAYTGGTTGKPKGVMGTHRS-IATMAQIQLAE 203
Query: 293 KFYPSDVYISYL---PLAH 308
+P+D +L PL+H
Sbjct: 204 WEWPAD--PRFLMCTPLSH 220
|
Length = 524 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 27/201 (13%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAA 471
R + A+P DV + +G + E YG TE+ ++ D LS G VG
Sbjct: 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESG-AVTFATSEDALSHPGTVGKAAPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLI--FKGYYKDEIQTKEVIDEDGWFHT 526
E++ VD + +P P+ GEI R F + K E + + ID G+ +
Sbjct: 333 AELRFVD-------EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAE--IDRGGFITS 383
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG--DS-FNS 583
GD+G G L + DRK+++ ++ G I +IE V V C V+G D+ F
Sbjct: 384 GDVGYLDADGYLFLCDRKRDMV-ISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGE 442
Query: 584 ALVAIV------SVDQDALKA 598
AL+A+V ++D+ ++A
Sbjct: 443 ALMAVVEPQPGATLDEADIRA 463
|
Length = 509 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-09
Identities = 50/147 (34%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA- 471
+R++G G + + V + LK G EGYG+TET ++Q H P+
Sbjct: 307 LRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTET---MAQT--------HSNPPDRPK 355
Query: 472 --C-EIKLVDV------PEMNYTSEDQPCPR-GEICVRGPLIFKGYYKDEIQTKEV-IDE 520
C I V PE T E+ P GEI V GP +FKGY+ T E I+
Sbjct: 356 LQCLGIPTFGVDARVIDPE---TLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEI 412
Query: 521 DG--WFHTGDIGMWIPGGRLKIIDRKK 545
DG +F TGD+G G I DR K
Sbjct: 413 DGKRFFRTGDLGRMDEEGYFFITDRLK 439
|
Length = 546 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 16/224 (7%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + L G+ G + ++ N P++ IV + VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIPSLPITTGVQ 232
+ Y +N A + + + Q + +E +R ++V D P+LP+ ++
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETS-LRHVIVTSLADVLPAEPTLPLPDSLR 178
Query: 233 ILTYS-----NLLS--QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--- 282
+ +LL + + P PP D +A + YT GTTG PKG + +++
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238
Query: 283 ASVAGATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSGVAV 325
A+ + V++S+LP I E + ++SG +
Sbjct: 239 AAAYAVAVVGG--EDSVFLSFLPEFWIAGENFGLLFPLFSGATL 280
|
Length = 567 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 16/169 (9%)
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV-GSPNAAC 472
F+ +GA P+ +++ G + +GMTE + +++ D+ + G P
Sbjct: 315 FLCAGA-PIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGV 373
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
E+K++D + +GE VRG F GY K D +GWF TGD+
Sbjct: 374 EVKVID-------ANGAKLSQGETGRLLVRGCSNFGGYLKRP--HLNSTDAEGWFDTGDL 424
Query: 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
G ++I R K++ + GE I +IEN+ + V Q +
Sbjct: 425 AFQDAEGYIRINGRSKDVI-IRGGENIPVVEIENLLYQHPAVAQVAIVA 472
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-08
Identities = 109/516 (21%), Positives = 178/516 (34%), Gaps = 99/516 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
++Y E + LI G+ +G+ E ++ V A AY VPL
Sbjct: 538 LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY----VPLD 593
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
D + Y+++ + V+ + L L VP + SL +
Sbjct: 594 PEYPQDRLAYMLDDSGVRLLLTQSHLLAQL-----PVP------------AGLRSLCLDE 636
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+L G S P PD++A + YTSG+TG PKG +SHG L V
Sbjct: 637 PADLL-------CGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIA 689
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
L LA A+ M + S A
Sbjct: 690 ------------ERLQLA-----ADDSMLMVSTFAFDL---------------------G 711
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
V L+ + +G T + R+ AA A + + PS L+
Sbjct: 712 VTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPS-HLQALLQASRVALP 770
Query: 410 GGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLISQLD----EGDNLSGH 464
+ + G + L D+L + G R+ YG TET+ +S + E D +
Sbjct: 771 RPQRALVCGGEA-LQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVP 829
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKE--VID 519
+G P A + ++D P P GE+ + G + +GY++ T E V D
Sbjct: 830 IGQPLANLGLYILD-------HYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPD 882
Query: 520 EDG-----WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQC 574
G + TGD+ + G ++ + R + K+ +G I +IE V +
Sbjct: 883 PFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREA 941
Query: 575 FV--YGDSFNSALVAIVSVDQ--DALKAWAASEGIQ 606
V LVA + D + A + ++
Sbjct: 942 VVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELK 977
|
Length = 3956 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 1e-08
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 34/233 (14%)
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-- 449
PS + L+ L +R + G L +++ + ++ G R+ YG TET+
Sbjct: 192 PS-LLRALLDALEPAALPS-LRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVD 249
Query: 450 CLISQLDEGDNLSGHV--GSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIF 504
++D D G V G P A + ++D + +P P GE+ + G +
Sbjct: 250 VTYHEVDPDDLDGGSVPIGRPIANTRVYVLD-------EDLRPVPVGVPGELYIGGAGVA 302
Query: 505 KGYYKDEIQTKE--VID---EDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557
+GY T E V D G + TGD+ W+P G L+ + R + K+ G I
Sbjct: 303 RGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIR-GYRIE 361
Query: 558 AEKIENVYAKCKFVGQCFV---YGDSFNSALVA-IVS-----VDQDALKAWAA 601
+IE V + V + LVA +V +D L+A+ A
Sbjct: 362 LGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFLA 414
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
+P+D A I +TSG+ G PKG V SH +L+A+V F P+D ++S LPL H
Sbjct: 361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFH 417
|
Length = 718 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
KPDD ATI ++SG+ G PKG +LSH N+++++ + DV +S LP H
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834
|
Length = 1146 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 49/178 (27%), Positives = 63/178 (35%), Gaps = 52/178 (29%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGR------VTEGYGMTETSCLISQLDEG--------- 458
R G GA + PDVL F YG+ E + +S G
Sbjct: 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVD 361
Query: 459 -DNLSGH---VGSPNAA--------C-------EIKLVDVPEMNYTSEDQPCPR---GEI 496
D L V C EI++ + P P G I
Sbjct: 362 RDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-------EAGMPLPERVVGHI 414
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-----GRLK--IIDRKKNI 547
CVRGP + GY++DE V+ DGW TGD+G + G GR K II +NI
Sbjct: 415 CVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLLDGYLYITGRAKDLIIINGRNI 471
|
Length = 579 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV--PLYDTL 172
TY E + + L G+ KG + ++ PE A ++ PL++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFA--LLGALKNGAIVGPLFEAF 132
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVIGGIDDQIPSLPITTG 230
+AV+ + + + + T +LL ++P+++ ++++G ++ P
Sbjct: 133 MEEAVRDRLEDSEAKVLI----TTPALLERKPADDLPSLKHVLLVGEDVEEGP------- 181
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
L ++ L+ Q +D A + YTSG+TG PKG + H ++
Sbjct: 182 -GTLDFNALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY 239
Query: 291 GTKFYPSDVY 300
+ DVY
Sbjct: 240 VLDLHEDDVY 249
|
Length = 570 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 223 PSLPITTGVQILTYSNLLSQ------GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVL 276
LP+ G++ L +L Q G S+ P P ++A + YTSG+TG PKGA
Sbjct: 1683 ARLPLPDGLRSL----VLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGN 1738
Query: 277 SHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
HG L+ + + +DV + + A
Sbjct: 1739 RHGALVNRLCATQEAYQLSAADVVLQFTSFA 1769
|
Length = 3956 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R+R++ +GA L + FG R+ EGYG+TE + ++S G VG
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPG 539
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE---------IQTKEVIDEDG 522
+ +L+ VP + E G + ++GP I GY + E + E G
Sbjct: 540 MDARLLSVPGI----EQG----GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERG 591
Query: 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567
W+ TGDI + G ++I R K K+A GE ++ E +E +
Sbjct: 592 WYDTGDIVRFDEQGFVQIQGRAKRFAKIA-GEMVSLEMVEQLALG 635
|
Length = 718 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 20/69 (28%)
Query: 487 EDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG------------- 530
E + P GEICV GP +F GYY + + DGWF TGD+G
Sbjct: 357 EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415
Query: 531 ---MWIPGG 536
M+I GG
Sbjct: 416 ASDMYISGG 424
|
Length = 528 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 207 PTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266
P+VR +V +GG + G T + LL G + P + PDD+A I +TSG
Sbjct: 135 PSVRRLVTVGG--------RLLWGGT--TLATLLRDGAAAPFPMADLAPDDMAAILFTSG 184
Query: 267 TTGTPKGAVLSHGNLIASV 285
+TGTPKG V +HG A +
Sbjct: 185 STGTPKGVVYTHGMFEAQI 203
|
Length = 552 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKE--VIDEDG--WFHTGDIGMWIPGGRLKII 541
+ CP GE+ + G + GY+ D T E + G + TGD+G + P G ++ +
Sbjct: 319 RDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFL 378
Query: 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ--CFVYGDSFNSALVAIV------SVDQ 593
R + K+ +G + +IE A+ V + V GD AL A V +VD
Sbjct: 379 GRADHQVKI-RGYRVELGEIEAALARHPGVQRAVVVVVGDGGAKALAAFVVAEDGAAVDA 437
Query: 594 DALKAWAA 601
L+A A
Sbjct: 438 AVLRAALA 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE + GL G+ +G + + N PE+ V A P+ L
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQ 232
+ YIV+ + + + ++ +E+P V L++V+ G +P G +
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG---PVP------GFR 122
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVA--TICYTSGTTGTPKGAV--LSHG----NLIAS 284
+Y L+ QP +P D+ A + Y+SGTTG PKG L
Sbjct: 123 --SYEEALAA-----QPDTPI-ADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMM 174
Query: 285 VAGATLGTKFYPSDVYISYLPLAH 308
+A G P VY+S PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307
P PDD+A + Y+SG+T P+G +++H L+A++ + G K P D +S+LP
Sbjct: 169 ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228
Query: 308 H 308
H
Sbjct: 229 H 229
|
Length = 579 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL--ISQLDEGDNLSGHVGSPN 469
+R + G ++D R+ YG TE + S+L G ++ +G P
Sbjct: 209 SLRTLILGGEACPQALVDRWSKP--RRLLNTYGPTEATVTATASRLTPGKPVN--IGRPL 264
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW--- 523
++D P GE+C+ GP + +GY T E D +
Sbjct: 265 PNYTCWVLDPDLEP------LVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLN 318
Query: 524 ------FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ---C 574
+ TGD+ ++ G L+ + RK + K+ +G+ I +IE V V
Sbjct: 319 NPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKI-RGQRIELGEIEAVLRALPGVVVAAVV 377
Query: 575 FVYGDSFNSALVAIVSVDQDALK 597
+ D LVA ++VD A
Sbjct: 378 LLLDDPGGKQLVAFLAVDGAAGG 400
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 38/191 (19%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
G+ KG + L NRPE+L + LG AV ++N
Sbjct: 83 GVGKGDVVALLMENRPEYLAAWLGLA-----------KLG--AVVALLNTQ--------- 120
Query: 194 QTLNSLLSCLSEVPTVRLIV----------VIGGIDDQIPSLPIT--TGVQILTYSNL-- 239
Q L L+ V LIV + T Y +L
Sbjct: 121 QRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAA 180
Query: 240 LSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
+ G P S D A YTSGTTG PK AV+SH + ++ G + P
Sbjct: 181 AAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPD 240
Query: 298 DVYISYLPLAH 308
DV LPL H
Sbjct: 241 DVLYCCLPLYH 251
|
Length = 600 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
PDD+A + YTSG+TG PKG ++ H L+ +A
Sbjct: 92 PDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
PDD A + YTSG+TG PKG V++H N+ +
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL 128
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 418 SGASPLSPDVLDFLKICF--GGRVTEGYGMTET--SCLIS---QLDEG----DNLSGH-V 465
S +P+ V++ + + YG TE I L DN +G V
Sbjct: 295 SAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICV 354
Query: 466 GSPNAACEIKLVDVPE--MNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKE--VI 518
G P E++++ + + + + GEI V GP++ + YY T+ +
Sbjct: 355 GRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIP 414
Query: 519 DEDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY--IAAEKIENVY---AKCKFV 571
D G W GD+G GRL RK + + A G I E+I N + + V
Sbjct: 415 DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALV 474
Query: 572 G 572
G
Sbjct: 475 G 475
|
Length = 552 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 32/151 (21%)
Query: 443 YGMTETSCLISQ-------LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
YG TE + ++ LD+ L +G + ++D E + + GE
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLP--IGYAKPDSPLLIID-EEGTKLPDGEQ---GE 346
Query: 496 ICVRGPLIFKGYYKDEIQTKEV-IDEDGW--FHTGDIG-----MWIPGGRLKIIDRKKNI 547
I + GP + KGY + +T E DG +HTGD G + GR ID
Sbjct: 347 IVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGR---ID----- 398
Query: 548 F--KLAQGEYIAAEKIENVYAKCKFVGQCFV 576
F KL G I E+IE + +V V
Sbjct: 399 FQIKLN-GYRIELEEIEQNLRQSSYVESAVV 428
|
Length = 503 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
DQ+P + L Y+ L+ P +P A I +TSG+TG PKG ++
Sbjct: 563 ADQLPRFADVPDLTSLCYNAPLA--PQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620
|
Length = 1296 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-06
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 223 PSLPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LPI G+ L +G P PD++A + YTSG+TG PKG +SHG+L
Sbjct: 4660 QRLPIPDGLASLALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSL 4719
Query: 282 IASVAGATLGTKFYPSDVYISYLPLA 307
+ + + P D + ++ +
Sbjct: 4720 VNHLHATGERYELTPDDRVLQFMSFS 4745
|
Length = 5163 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LP+ G+ ++T L + K DD I +TSGTTG PKG +SH NL
Sbjct: 109 LPLEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNL 168
Query: 282 I 282
+
Sbjct: 169 V 169
|
Length = 503 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
VR ++ G +++ ++ + V + + RS +PP A + T+G+T
Sbjct: 109 VRTVLSHGSHLERLRAVD--SSVTVHDLATAAHTNRS--ASLTPPDSGGPAVLQGTAGST 164
Query: 269 GTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAH 308
GTP+ A+LS G +++++ G A +G +DV S+LPL H
Sbjct: 165 GTPRTAILSPGAVLSNLRGLNARVGLD-AATDVGCSWLPLYH 205
|
Length = 525 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 251 SPPKPDDV---ATIC--YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
PP DDV + YTSGTTG PK AV+ H AGA P DV LP
Sbjct: 94 EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLP 153
Query: 306 LAHIYERANQVMTVYSGVAVG 326
L Y A +M V + G
Sbjct: 154 L---YHSAGGIMGVGQALLHG 171
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 5/171 (2%)
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPN 469
+R + S PL+P+V+ + + G + + + TET + +I+ G +G P
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTG 527
E +++ T P GE+ ++ P +F+GY +E + DGW+ TG
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG 325
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG 578
D+ G + R ++ K A G + ++E+ + V + V G
Sbjct: 326 DLAYRDEDGYFWFVGRADDVIKTA-GHLVGPFEVESALMEHPAVAEAGVIG 375
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 74/321 (23%), Positives = 121/321 (37%), Gaps = 61/321 (19%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K + I +TSGTTG PK A SH +L + PSD+ + I
Sbjct: 172 KSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAA 231
Query: 313 ANQVMTVYSGVAVGFY----QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
+ + + A F + D ++ ++ T FCS P +Y
Sbjct: 232 IWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVY-------------- 277
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
R+ +Q + S K S +R +G PL+P+VL
Sbjct: 278 -----RML------VQQDLTSYKFKS------------------LRHCVTGGEPLNPEVL 308
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYG TET LI +G + G +G + +++++D N
Sbjct: 309 EQWKAQTGLDLYEGYGQTETG-LICANFKGMKIKPGSMGKASPPYDVQIIDD-NGNVLP- 365
Query: 488 DQPCPRGEICVR-GPL----IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
P G+I +R P +F Y + +T I D + TGD G+ G +
Sbjct: 366 --PGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDEDGYFWFVG 422
Query: 543 RKKNIFKLAQGEYIAAEKIEN 563
R ++ + G I ++E+
Sbjct: 423 RADDVI-NSSGYRIGPFEVES 442
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DDVA + TSGTTGTPKGA+L+ L AS A AT
Sbjct: 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTAS-ADAT 67
|
Length = 358 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 203 LSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262
+++ PT+R ++V G + L P P +VA
Sbjct: 148 VAKHPTLRHVIVAGEAEHPSVLE------------AALCHPAGLFTPAPPADAGEVAFFQ 195
Query: 263 YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ GTTGTPK +H + SV + F VY+ LP AH +
Sbjct: 196 LSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNF 243
|
Length = 542 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 39/193 (20%)
Query: 412 RVRFM-GSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVG-SP 468
R+R M G+G L PD+ D + FG R+ E Y +E + + N G VG P
Sbjct: 315 RLRLMIGNG---LRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVF---NFDGTVGRVP 368
Query: 469 -NAACEIKLVDVPEMNYTSED---------QPCPRGEICVRGPLI--------FKGYYKD 510
A +V + + + + GE+ G LI F GY
Sbjct: 369 LWLAHPYAIV---KYDVDTGEPVRDADGRCIKVKPGEV---GLLIGRITDRGPFDGYTDP 422
Query: 511 EIQTKEVI-----DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY 565
E K+++ D WF+TGD+ G + +DR + F+ +GE +A ++EN
Sbjct: 423 EASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENAL 481
Query: 566 AKCKFVGQCFVYG 578
+ V + VYG
Sbjct: 482 SGFPGVEEAVVYG 494
|
Length = 600 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DG+V + TY E + SGL G+ KG +G+Y PE ++ A + I
Sbjct: 2 DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCV 192
+VP++ GPDAV + A + +
Sbjct: 59 AVPIFSGFGPDAVATRLQDAEAKVLITA 86
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 225 LPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
LP+ GV L + P +++A + YTSG+TG PKG +SHG L+A
Sbjct: 2114 LPLPAGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVA 2173
Query: 284 SVAGATLGTKFYPSDVYISYLPLA 307
A + P+D + ++ +
Sbjct: 2174 HCQAAGERYELSPADCELQFMSFS 2197
|
Length = 5163 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 41/187 (21%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKIC--FG---GRVTEGYGMTETSCLIS----------- 453
G +R +G P+ D + F FG G YG+ E++C ++
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331
Query: 454 --QLDEGDNLSGH--VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIF 504
D+G H +G+P E+++ + D GEI +RG +
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRI--------SPGDGAAGVAGREIGEIEIRGASMM 383
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
GY ID D WF TGD+G + GG L + R K + +A G I +IE V
Sbjct: 384 SGYLGQA-----PIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVA-GRNIFPTEIERV 436
Query: 565 YAKCKFV 571
A+ + V
Sbjct: 437 AAQVRGV 443
|
Length = 525 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHG---NLIASV 285
P PDD+A + +TSG+TG PKG +++H N I V
Sbjct: 119 PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 223 PSLPITTGVQILTYSN--LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
LP+ GVQ+L +G S P + P+++A + YTSG+TG PKGA H
Sbjct: 620 RKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 281 LIASV 285
L +
Sbjct: 680 LSNRL 684
|
Length = 5163 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 441 EGYGMTETSCLISQLDEGDNLSGH-VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR 499
E YG +E S + + +DE + VG P ++++ + E Q G + V+
Sbjct: 284 EFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAG----EEVQKGEIGTVYVK 339
Query: 500 GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAE 559
P F GY + +E ++ DGW D+G G + I+ R+KN+ L G I E
Sbjct: 340 SPQFFMGYIIGGVLARE-LNADGWMTVRDVGYEDEEGFIYIVGREKNMI-LFGGINIFPE 397
Query: 560 KIENVYAKCKFVGQCFVYG--DSF-NSALVAIV--SVDQDALKAW 599
+IE+V + V + V G DS+ VAI+ S + LK++
Sbjct: 398 EIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSF 442
|
Length = 487 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 9e-06
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC--SAYSFISVPLYDTL 172
TY E + G+ +G + ++ N +L V A S + V + L
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH--L 83
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P YIV+ + +A+ L+ + L + P VR +V+ G +
Sbjct: 84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEG--------- 134
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDV--ATICYTSGTTGTPKG--AVLSHGNLIASVAGA 288
+ Y+ ++ P + P D+ + Y+SGTTG PKG L +
Sbjct: 135 FVGYAEAVAG-----LP-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLT 188
Query: 289 TLGTKFYPSD---VYISYLPLAH 308
+ + VY+S PL H
Sbjct: 189 AFLQRLWGFRSDMVYLSPAPLYH 211
|
Length = 511 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 22/157 (14%)
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L G+ KG I ++ N + A + VP PD V Y+ + +A+
Sbjct: 49 LAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM 108
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + + P + +V IGG + L +L G
Sbjct: 109 ICHADFPEHAAAVRAASPDLTHVVAIGGA-------RAGLDYEALVARHL---GA----- 153
Query: 250 FSPPKP-----DDVATICYTSGTTGTPKGAVLSHGNL 281
DD +TSGTTG PK AVL+HG +
Sbjct: 154 --RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQM 188
|
Length = 528 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 43/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD-----HACSAYSFISVPL 168
++Y E + LI G+ +G+ V R +IV A AY VPL
Sbjct: 3121 LSYAELNRRANRLAHRLIAIGVGPDVLVGVA-VERSVEMIVALLAVLKAGGAY----VPL 3175
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + Y++ + V+ + T LL LP
Sbjct: 3176 DPEYPRERLAYMIEDSGVKLLL----TQAHLLE----------------------QLPAP 3209
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
G LT L G S P + +++A + YTSG+TG PKG + HG L
Sbjct: 3210 AGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGAL 3262
|
Length = 3956 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
P+D A + +TSGTTG PKG + H ++A A A P DVY
Sbjct: 88 PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 12/175 (6%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDT-L 172
+TY E + GL+ G+ G + + N ++ + + L +T
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNH-RGFVLALYAAGKVGARIILLNTGF 133
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
+ + V+A+ LLS L RL G DD PS
Sbjct: 134 SGPQLAEVAAREGVKALV-YDDEFTDLLSALPP-DLGRLRAWGGNPDDDEPSGS-----T 186
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
T +L++ + P PPKP + + TSGTTGTPKGA + +A +AG
Sbjct: 187 DETLDDLIAGSSTAPLP-KPPKPGGI--VILTSGTTGTPKGAPRPEPSPLAPLAG 238
|
Length = 549 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
DD A I YTSGTTG PKG V +H A
Sbjct: 99 KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAA 130
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 196 LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKP 255
+ + +P++ +VV+ + + L +S + F
Sbjct: 178 REKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLE--FERLPF 235
Query: 256 DDVATICYTSGTTGTPKGAVLSHG 279
D I Y+SGTTG PK V G
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAG 259
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA 283
PDD+A + YTSG+TG PKG + H N A
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS-CLISQLDEGDNLSGHVGSPNAA 471
++ + S LSP++ FG + YG TE + I+ ++ G VG P
Sbjct: 325 LKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKG 384
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+K++D PRG I V F+GY + K++I DG +GD
Sbjct: 385 VTVKILD-------ENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQII--DGLLSSGD 433
Query: 529 IGMWIPGGRLKIIDR 543
+G + G L + R
Sbjct: 434 VGYFDEDGLLFVDGR 448
|
Length = 549 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 80/428 (18%), Positives = 141/428 (32%), Gaps = 84/428 (19%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
P+ L+ + E +L+ + LP+ GVQ+L L +G N +P
Sbjct: 3139 PEYPEERLAYMLEDSGAQLL-----LSQSHLRLPLAQGVQVL----DLDRGDENYAEANP 3189
Query: 253 PK---PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
P+++A + YTSG+TG PKG + H L +
Sbjct: 3190 AIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWM--------------------- 3228
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVF---CSVPRLYNRIYAGITSAVR 366
L L+ T F V L+ + +G +
Sbjct: 3229 --------------------QQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLA 3268
Query: 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
R+ + + PS + L + G A P D
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALP--AD 3326
Query: 427 VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VGSPNAACEIKLVDVPEMNY 484
+ ++ G + YG TE + ++ + +G P A ++D
Sbjct: 3327 LQQ--QVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD------ 3378
Query: 485 TSEDQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGW------FHTGDIGMWIPG 535
+P P G E+ + G + +GY+ T E D + + TGD+ +
Sbjct: 3379 -GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVD--- 592
G ++ I R + K+ +G I +IE + +V + V + +V D
Sbjct: 3438 GVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDEAG 3496
Query: 593 --QDALKA 598
++ALKA
Sbjct: 3497 DLREALKA 3504
|
Length = 5163 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
PQ LL L T+ +V+ G ++ +L L
Sbjct: 85 PQLPQPLLEELLPSLTLDFALVLEG-ENTFSALT------------SLHLQLVEGAHAVA 131
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
+P +AT+ TSG+TG PK AV + +AS G F D ++ LPL H+
Sbjct: 132 WQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DGT EY T+G+ A + + L G+ +G +G+Y PE I A +
Sbjct: 1 DGTREEY---TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFC 191
SVPL GPDAV++ + + + +
Sbjct: 58 SVPLSVLFGPDAVEHRLRDSGARVLVT 84
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG------NLIASVAGATLGTKFYPSDVYISYLPLAH 308
PDD A + YTSGTTG PKG +S N ++ + Y + +PL H
Sbjct: 86 PDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTY------TCMPLYH 139
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-- 295
+L S S+ +P P A + YTSG+T TP G ++SH N+IA+ L + ++
Sbjct: 145 DLDSPRGSDARPRDLPST---AYLQYTSGSTRTPAGVMVSHRNVIANF--EQLMSDYFGD 199
Query: 296 -----PSDVYI-SYLPLAH 308
P D + S+LP H
Sbjct: 200 TGGVPPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 14/154 (9%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
GL G+ G C+ L N + +A +VP+ P+ + YI+ +
Sbjct: 24 AAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSG 83
Query: 186 VQAVFCVPQTLNSLLSCLSE------VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ + L+ L S L VPT I I + + P + +
Sbjct: 84 ARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGA----IDWEGW 139
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
L+Q +P+ P ++ YTSGTTG PKG
Sbjct: 140 LAQQ----EPYDGPPVPQPQSMIYTSGTTGHPKG 169
|
Length = 509 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 443 YGMTE-----TSCLISQ--LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--- 492
YG TE TS I+Q LD+ L +G + ++D E +P P
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLP--IGFAKPDMNLFIMD-------EEGEPLPEGE 341
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVI--DEDGW-FHTGDIG-----MWIPGGRLKIIDRK 544
+GEI + GP + KGY + +T E E + TGD G GR +D +
Sbjct: 342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGR---LDFQ 398
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFV 576
KL G I E IE + ++ V
Sbjct: 399 ---IKL-HGYRIELEDIEFNLRQSSYIESAVV 426
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 28/144 (19%)
Query: 413 VRFMGSGASPLSPDV----LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVG 466
+R A+P +V +D+ +G + E Y +E ++ + D L+ G VG
Sbjct: 264 LRVAIHAAAPCPVEVKRAMIDW----WGPIIHEYYASSE-GGGVTVITSEDWLAHPGSVG 318
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG------YYKDEIQTKEVIDE 520
E++++D + P GEI G + F+ Y+ D +T +
Sbjct: 319 KA-VLGEVRILD-------EDGNELPPGEI---GTVYFEMDGYPFEYHNDPEKTAAARNP 367
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRK 544
GW GD+G G L + DRK
Sbjct: 368 HGWVTVGDVGYLDEDGYLYLTDRK 391
|
Length = 502 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNL--LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
L I G QI+T S L + K DD I YTSG+TG PKG +SH NL
Sbjct: 107 LSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNL 166
Query: 282 I 282
+
Sbjct: 167 V 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 82/357 (22%), Positives = 127/357 (35%), Gaps = 100/357 (28%)
Query: 250 FSPPKP--DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
+ PP+ D +A + YTSG+T P G ++H NL +V + D +S+LP
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
H + + + G + M P F P + R A
Sbjct: 232 H---DMGLITVLLPALL-----GHYITFMS------PAAFVRRPGRWIRELA-------R 270
Query: 368 SGGLRERLFNAAYN-AKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLS 424
G F+AA N A + A G K+ P D + +K L +G+ P+S
Sbjct: 271 KPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD---LSNVKGLL--------NGSEPVS 319
Query: 425 PDVLDFLKICFG------GRVTEGYGMTETSCLIS----------------QLDEGDNLS 462
P + F + YGM E + +S +L+ G +
Sbjct: 320 PASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVE 379
Query: 463 GHVGSPNAACEIK-----------LVDVPEMNYTSEDQPCPR-GEICVRGPLIFKGYYKD 510
+PNA ++ +VD PE T+ + P + GEI + G I GY+
Sbjct: 380 VPADAPNAVAQVSAGKVGVSEWAVIVD-PE---TASELPDGQIGEIWLHGNNIGTGYWGK 435
Query: 511 EIQTKEVI-----------------DEDGWFHTGDIGMWIPG-----GRLK---IID 542
+T D+ W TGD G++ G GR+K IID
Sbjct: 436 PEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFDGELYITGRVKDLVIID 492
|
Length = 631 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 31/97 (31%)
Query: 249 PFSPPKP---DDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATLGTKFY----PSDV- 299
P+ P+P +D I YTSG+TG PKG V + G L+ A K+ P DV
Sbjct: 215 PYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV----YAATTFKYVFDIHPDDVY 270
Query: 300 -------------YISYLPLAHIYERANQVMTVYSGV 323
YI Y PLA+ A VM Y G
Sbjct: 271 WCTADIGWITGHSYIVYGPLAN---GATTVM--YEGA 302
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSH-----GNLIASVAGATLGTKFYPSDVYISYLP 305
S A YTSGTTG PK A +SH + + S+ G T DV + LP
Sbjct: 137 SGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLCGVT------ADDVVYTTLP 190
Query: 306 LAH 308
L H
Sbjct: 191 LYH 193
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 12/200 (6%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC--LISQLDEGDNL---SGHVGS 467
+R +G G S + F++ G R + YG++ET C L D+G + +G VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIEAT-GVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346
Query: 468 PNAACEIKLVDVPEMNYTSED--QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
P ++ L + T+ G + ++ P GY+ + +T EV+ DGW +
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVN 405
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ--CFVYGDSFNS 583
TGD+ G I R + + G IA ++++ + V + C+ D
Sbjct: 406 TGDLLERREDGFFYIKGRSSEMI-ICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFG 464
Query: 584 ALVAIVSVDQDALKAWAASE 603
ALV + V L AA
Sbjct: 465 ALVGLAVVASAELDESAARA 484
|
Length = 540 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 56/202 (27%), Positives = 81/202 (40%), Gaps = 29/202 (14%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG---HVGSPN 469
+R + S L P + +G + GYG TE I L +L VG P
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG--IGALATPADLRDAPETVGKPV 351
Query: 470 AACEIKLVDVPEMNYTSEDQPC-PR--GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
A C ++++D ++P PR G I V G L Y K V+D G T
Sbjct: 352 AGCPVRILD-------RNNRPVGPRVTGRIFVGGELAGTRYTDG--GGKAVVD--GMTST 400
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNS 583
GD+G GRL I+ R+ ++ ++ GE + +EN A V V G + F
Sbjct: 401 GDMGYLDNAGRLFIVGREDDMI-ISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGH 459
Query: 584 ALVAIV------SVDQDALKAW 599
L A V VD L+ +
Sbjct: 460 RLAAFVVLHPGSGVDAAQLRDY 481
|
Length = 516 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNL 281
P A + YTSG+TG PKG V+SHG +
Sbjct: 2332 PQHQAYLIYTSGSTGKPKGVVVSHGEI 2358
|
Length = 4334 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 615 | |||
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.94 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.9 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.76 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.67 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.48 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.98 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.31 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.99 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 97.69 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.56 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.44 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.11 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.94 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 87.4 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 84.48 |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-110 Score=873.09 Aligned_cols=552 Identities=49% Similarity=0.821 Sum_probs=510.5
Q ss_pred CccccCCCCCc-cccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcC
Q 007169 56 WNVYRSSRSPL-KLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134 (615)
Q Consensus 56 ~~~~r~~~~~~-~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~G 134 (615)
+.+||+...+. .+... ...+..|+++.|.+.+..+|+.+|++++...+ ..++|+|+||+|+.+++.++|++|+++|
T Consensus 53 ~~~~~s~~~~~~~~~~~--~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG 129 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSC--PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLG 129 (691)
T ss_pred CCceeeeeccCCCCCCC--CCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhC
Confidence 56788876542 22111 24688999999999999999999999995444 3478999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEc-ccchHHHHhhhcc--CCCceE
Q 007169 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV-PQTLNSLLSCLSE--VPTVRL 211 (615)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~-~~~~~~l~~~~~~--~~~l~~ 211 (615)
+++++.|||++.||+||+++.+||..+|.++||||++++++++.||++++++.++||+ +...+.+++.... ++.+|.
T Consensus 130 ~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~ 209 (691)
T KOG1256|consen 130 VKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKA 209 (691)
T ss_pred CCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCcccee
Confidence 9999999999999999999999999999999999999999999999999999999999 6677888887764 788999
Q ss_pred EEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCC-CCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhh--
Q 007169 212 IVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPF-SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-- 288 (615)
Q Consensus 212 ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~-- 288 (615)
+|.+++..+..+......++.+++|+++++.|..+...+ .+++|+|.|+|+|||||||+|||||+||+|+++.+...
T Consensus 210 iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~ 289 (691)
T KOG1256|consen 210 IIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFF 289 (691)
T ss_pred EEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhh
Confidence 999999888888888888999999999999998766665 48899999999999999999999999999999966532
Q ss_pred -ccC---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHH
Q 007169 289 -TLG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (615)
Q Consensus 289 -~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 364 (615)
... ......|+++|||||+|++++.+....++.|+.++|+++|+..+.+++++++||++.+||++|+++++.++.+
T Consensus 290 ~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~ 369 (691)
T KOG1256|consen 290 LSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQ 369 (691)
T ss_pred hhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHH
Confidence 111 1223479999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hhcCcchHHHHHHHHHHHHH-HHHhcCCCC--CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccc
Q 007169 365 VRTSGGLRERLFNAAYNAKK-QAMLSGKNP--SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTE 441 (615)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~--~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 441 (615)
+++++.+++++|+.|++.|+ +.+..|... ..+||+++|+|+++.+|+++|.+++|+||+++++..+++..+||+|++
T Consensus 370 ~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~e 449 (691)
T KOG1256|consen 370 VQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLE 449 (691)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeee
Confidence 99999999999999999999 778888876 599999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCC
Q 007169 442 GYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521 (615)
Q Consensus 442 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~ 521 (615)
+||+|||++.++...+.+...+++|.|+|++++|++|+++++|.+.+. .|||||||++||+|||+||++|+++||+|
T Consensus 450 GYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~---~GEIcirG~~Vf~GYyK~p~~T~e~ideD 526 (691)
T KOG1256|consen 450 GYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGS---KGEICVRGPNVFMGYYKDPEKTAEAIDED 526 (691)
T ss_pred cccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCC---cceEEEecchhceeccCChHHHhhhhccc
Confidence 999999997787777777899999999999999999999999999998 89999999999999999999999999999
Q ss_pred CeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHH
Q 007169 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601 (615)
Q Consensus 522 gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~ 601 (615)
||+||||+|+||++|.|+|+||+||+||+++||||.|+.||+++.+.+.|.+++|+|++.+.+++|+|+|+++.+..|+.
T Consensus 527 GWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~ 606 (691)
T KOG1256|consen 527 GWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAA 606 (691)
T ss_pred cccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhhh
Q 007169 602 SEGIQVTFSWLS 613 (615)
Q Consensus 602 ~~~~~~~~~~~~ 613 (615)
++++..+++++|
T Consensus 607 ~~~~~~~~eelc 618 (691)
T KOG1256|consen 607 KDGVKGTFEELC 618 (691)
T ss_pred HccCchhHHHHh
Confidence 889998999887
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-105 Score=793.37 Aligned_cols=567 Identities=39% Similarity=0.643 Sum_probs=524.7
Q ss_pred CceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEe--------ecCc------
Q 007169 42 GYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR--------VDGT------ 107 (615)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~--------~~~~------ 107 (615)
+|+|++.....+.++.+|||..+.+++.+. +.+...|++++|+..++++.++.++++|.. .||+
T Consensus 6 ~~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~--~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~ 83 (678)
T KOG1180|consen 6 KYRVKAKPAANEHETAPYRNVRSFDGLVSP--PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYE 83 (678)
T ss_pred hcccccCCCCCCCCCccccccccCCCccCC--CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEe
Confidence 377777777777889999999886667644 677999999999999999999999999864 3554
Q ss_pred cCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccc
Q 007169 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC-IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (615)
Q Consensus 108 ~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~-V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (615)
.++|+|+||.|+.+++.++|++|.+.|++++++ ++|+++.+.+|+++++||++.+..+|.+|.+++.+.+.|-|+++++
T Consensus 84 Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~ 163 (678)
T KOG1180|consen 84 LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES 163 (678)
T ss_pred ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc
Confidence 578999999999999999999999999998775 9999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCC----CcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEE
Q 007169 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSL----PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262 (615)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~ 262 (615)
+.+|++.+.++++....+.++.+++||.+++.+...... ....++.+++|+++++.|+....++.++.|+|+|+||
T Consensus 164 ~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IM 243 (678)
T KOG1180|consen 164 TAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIM 243 (678)
T ss_pred eEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEE
Confidence 999999999999999989999999999999754322221 1335789999999999999877777778999999999
Q ss_pred eccCCCCCCcEEEecHHHHHHHHHhhccCc-ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHH----
Q 007169 263 YTSGTTGTPKGAVLSHGNLIASVAGATLGT-KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD---- 337 (615)
Q Consensus 263 ~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~---- 337 (615)
|||||||.|||||++|+|+++.+.+..... .+.+.|+++.||||+|++++.+.+.+++.|+.+++- ++..|.+
T Consensus 244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~--S~~TLtdts~k 321 (678)
T KOG1180|consen 244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYS--SPLTLTDTSSK 321 (678)
T ss_pred EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecC--Ccceecccchh
Confidence 999999999999999999999999887664 689999999999999999999999999999999994 3443333
Q ss_pred -------HHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcC
Q 007169 338 -------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410 (615)
Q Consensus 338 -------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g 410 (615)
++..+|||++.+||.+|+++.+.+..++...+.+.+.+|..++.+|+..++....-+.+||.++|+++|..+|
T Consensus 322 i~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lG 401 (678)
T KOG1180|consen 322 IKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLG 401 (678)
T ss_pred hccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhC
Confidence 6778999999999999999999999999999999999999999999999886666679999999999999999
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCC
Q 007169 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (615)
Q Consensus 411 ~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~ 490 (615)
++||++++||+||+++.++|+..+|+|++.++||+||+++..+...+.+...|.+|.|+++++++++|.++++|...+.|
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P 481 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP 481 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCcccccccCChhhhhhccCC-CC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhc
Q 007169 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDE-DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (615)
Q Consensus 491 ~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~-~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~ 567 (615)
|+|||||+|++|..|||+|||+|++.|.. || ||+|||+|++.+||.|.|+||+||++|+.+||||+++.||++|+.
T Consensus 482 -PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s 560 (678)
T KOG1180|consen 482 -PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRS 560 (678)
T ss_pred -CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhc
Confidence 89999999999999999999999999977 89 999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCC-Chhhhh
Q 007169 568 CKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQV-TFSWLS 613 (615)
Q Consensus 568 ~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~~~~-~~~~~~ 613 (615)
+|.|..+||++++...++||+|||++..+..|+++.|+.. +++++|
T Consensus 561 ~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc 607 (678)
T KOG1180|consen 561 SPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELC 607 (678)
T ss_pred CcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHh
Confidence 9999999999999999999999999999999999999984 899887
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-90 Score=777.65 Aligned_cols=574 Identities=83% Similarity=1.396 Sum_probs=507.7
Q ss_pred ccCCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHH
Q 007169 39 LEQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118 (615)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e 118 (615)
+++.||++++.+..++++.+||+...+.++.+.+++.+...|++++|+++++++|+++|++++...++..+.++++||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~e 83 (651)
T PLN02736 4 HEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGE 83 (651)
T ss_pred cccCcceeCCCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHH
Confidence 35679999999999999999999888888877776778889999999999999999999976521233334578899999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHH
Q 007169 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS 198 (615)
Q Consensus 119 l~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~ 198 (615)
|.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.+..+.
T Consensus 84 l~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~ 163 (651)
T PLN02736 84 AGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNT 163 (651)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecH
Q 007169 199 LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278 (615)
Q Consensus 199 l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th 278 (615)
+......++.++.++.++.............+....+|+++.+.+.....+.....++|+++|+|||||||.||||++||
T Consensus 164 ~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh 243 (651)
T PLN02736 164 LLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTH 243 (651)
T ss_pred HHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEec
Confidence 77777677888888887542211111111234456789888765533222333457899999999999999999999999
Q ss_pred HHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHH
Q 007169 279 GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358 (615)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~ 358 (615)
+++++.+.+....+++.++|++++++|++|++++...+.+++.|++++++++++..+++.|++++||+++++|++|+.++
T Consensus 244 ~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~ 323 (651)
T PLN02736 244 GNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIY 323 (651)
T ss_pred HHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHH
Confidence 99999988877778889999999999999999998878899999999999899999999999999999999999999999
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc
Q 007169 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438 (615)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~ 438 (615)
+.+...+...+.+++++|+.++..+...+..+..+...+++++++++++.+|+++|.+++||+++++++.+++++.+|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~ 403 (651)
T PLN02736 324 DGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGR 403 (651)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 99998999999999999999999988888887777788899999999999999999999999999999999999889999
Q ss_pred cccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc
Q 007169 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518 (615)
Q Consensus 439 v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~ 518 (615)
++++||+||+++.++...+.+...+++|+|+|+++++|+|.+++.+...+.+++.|||+|+||++|.|||++|+.|++.|
T Consensus 404 ~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~ 483 (651)
T PLN02736 404 VLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI 483 (651)
T ss_pred eEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence 99999999998777666655667889999999999999997776666667766789999999999999999999999999
Q ss_pred CCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHH
Q 007169 519 DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKA 598 (615)
Q Consensus 519 ~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~ 598 (615)
+.||||+|||+|++|+||+|+|+||+||+||+++|++|+|.+||++|.+||+|.+|+|+|+..++.++|+|+|+++.+.+
T Consensus 484 ~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~~~A~vv~~~~~~~~ 563 (651)
T PLN02736 484 DEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKA 563 (651)
T ss_pred ccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEecCCCceeEEEEEeCHHHHHH
Confidence 88999999999999999999999999999998789999999999999999999999999987678999999999999999
Q ss_pred HHHHcCCC-CChhhh
Q 007169 599 WAASEGIQ-VTFSWL 612 (615)
Q Consensus 599 ~~~~~~~~-~~~~~~ 612 (615)
|+++.+++ .++.++
T Consensus 564 ~~~~~~~~~~~~~~~ 578 (651)
T PLN02736 564 WAASEGIKYEDLKQL 578 (651)
T ss_pred HHHHcCCCccCHHHH
Confidence 99988876 444444
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-91 Score=777.32 Aligned_cols=549 Identities=26% Similarity=0.423 Sum_probs=471.5
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHH
Q 007169 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120 (615)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~ 120 (615)
..|+..++.+..+++|.+||.....+. .+.....|+.++|.+.++++|+++|+... .++ ..++++||+|+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~p~~~Al~~~--~~g--~~~~~~Ty~el~ 98 (746)
T PTZ00342 28 KGYSEICEKATNENESSVYCMKDHKKK-----SSLYVYKHIMKLLLEKYKLNNNKIAIVEH--SCG--EPQNYITYGNFF 98 (746)
T ss_pred ceeeeEecCCCCCCCCCceecCchhhc-----ccccccchHHHHHHHHHhhcCCceeEecc--CCC--CCceeeeHHHHH
Confidence 449999999999999999998775555 23457899999999999999999999753 122 236789999999
Q ss_pred HHHHHHHHHHHHc---CCCCC-----------CEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccc
Q 007169 121 TARTEVGSGLIYH---GISKG-----------SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (615)
Q Consensus 121 ~~~~~la~~L~~~---Gv~~g-----------d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (615)
+++.++|++|.+. |+++| |+|+|+++|++||+++++||+++|+++||+|++++++++.++|+++++
T Consensus 99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~ 178 (746)
T PTZ00342 99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL 178 (746)
T ss_pred HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence 9999999999974 99998 999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccchHHHHhhhccCCCceEEEEECCCCCCC-----------------CC-------------------------
Q 007169 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI-----------------PS------------------------- 224 (615)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~-----------------~~------------------------- 224 (615)
+++|++.+..+.+.+...+++.++.+++++...... ..
T Consensus 179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (746)
T PTZ00342 179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL 258 (746)
T ss_pred CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999888888888777888899999987532110 00
Q ss_pred ---------------CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc
Q 007169 225 ---------------LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289 (615)
Q Consensus 225 ---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~ 289 (615)
.....+..+..|+++.+.... ..+..+.+++|+++|+|||||||.||||++||+|+++.+....
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~ 337 (746)
T PTZ00342 259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC 337 (746)
T ss_pred ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence 000112334455665443221 1223345789999999999999999999999999998886554
Q ss_pred cCc--ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhc
Q 007169 290 LGT--KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (615)
Q Consensus 290 ~~~--~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 367 (615)
... ...+.|++++++|++|++++...+.+++.|+++++++.++..++++|++++||++++||++|++|++.+...+..
T Consensus 338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~ 417 (746)
T PTZ00342 338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINN 417 (746)
T ss_pred hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhh
Confidence 321 233568999999999999998888889999999998889999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCCCchhhHH--hHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccc
Q 007169 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGM 445 (615)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~ 445 (615)
.+.+++++|++++..+..... + ..+.+++.+ +|+++++.+|+++|.+++||+|+++++.++|+..+|++++++||+
T Consensus 418 ~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGl 495 (746)
T PTZ00342 418 LPPLKRFLVKKILSLRKSNNN-G-GFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGL 495 (746)
T ss_pred cCHHHHHHHHHHHHHHHHhhc-C-CcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeecc
Confidence 899999999999998877543 2 234666665 799999999999999999999999999999999899999999999
Q ss_pred ccccccccccCCCCCCCCCcCCCC-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCee
Q 007169 446 TETSCLISQLDEGDNLSGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524 (615)
Q Consensus 446 TE~~~~~~~~~~~~~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~ 524 (615)
||+++.++.+.+.+...+++|+|+ |+++++|+|+++...... .+.|||++|||++|.|||++|+.|+++|+.||||
T Consensus 496 TEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~---~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~ 572 (746)
T PTZ00342 496 TETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDT---LPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYF 572 (746)
T ss_pred CcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCC---CCceEEEEecCcccccccCChhhhhhhcCcCCcc
Confidence 999877776666667889999998 999999999665332222 2489999999999999999999999999889999
Q ss_pred ecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcC
Q 007169 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEG 604 (615)
Q Consensus 525 ~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~ 604 (615)
||||+|++|+||+|+|+||+||+||+++|+||+|++||++|.+||.|.+|+|+|++.+++++|+|+|+++.+.+|+++++
T Consensus 573 ~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~ 652 (746)
T PTZ00342 573 KTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDN 652 (746)
T ss_pred cCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcC
Confidence 99999999999999999999999998899999999999999999999999999987678999999999999999999864
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-92 Score=745.12 Aligned_cols=513 Identities=39% Similarity=0.599 Sum_probs=434.8
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++..++.+.++.+|+..++... ..+.++.+||+|+.+++.++|++|++.|+..||+|+|++.|++||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~ 88 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL 88 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578899999999999998888766 34568899999999999999999999999779999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-HHHHhhhccCCCceEEEEECCCCCCCC-----CCCcCCC
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-NSLLSCLSEVPTVRLIVVIGGIDDQIP-----SLPITTG 230 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-~~l~~~~~~~~~l~~ii~~~~~~~~~~-----~~~~~~~ 230 (615)
||+.+|++.||+|++.+++++.|+|++++++++|++.... +.+......++.+..++.......+.. .......
T Consensus 89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (613)
T COG1022 89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD 168 (613)
T ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence 9999999999999999999999999999999999998544 444444444433222221111000000 0000001
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcc-cCCCcEEEEcCChHHH
Q 007169 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHI 309 (615)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~d~~l~~lPl~h~ 309 (615)
.....+ .+..... .....+..+||+|+|+|||||||.|||||+||+|+++++........ +.++|+++|+||++|+
T Consensus 169 ~~~~~~-~~~~~~~--~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi 245 (613)
T COG1022 169 EGISLF-LIDSAGL--EGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHI 245 (613)
T ss_pred ccchhh-hhccccc--ccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHH
Confidence 111111 1111111 11224678999999999999999999999999999999999988886 9999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh-
Q 007169 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML- 388 (615)
Q Consensus 310 ~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 388 (615)
+++.+.......|+...++..++..+++++++++||++++||++|+.+.+.+..++.+.+..++.+|++|+..+.....
T Consensus 246 ~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 246 FERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 9999865544455555555689999999999999999999999999999999999999999999999999987654332
Q ss_pred ---cCCCC--CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCC
Q 007169 389 ---SGKNP--SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463 (615)
Q Consensus 389 ---~~~~~--~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (615)
.+..+ ....|+++|+|+++.+|+++|++++||+++++++..+++.. |+++.++||||||+++++++++.+...+
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~~~~g 404 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDRFVLG 404 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccCcccC
Confidence 22222 24579999999999999999999999999999999999985 8999999999999999999999999999
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|.|+|++|+||+| .|||+||||+||+|||++|++|+++|++||||+|||+|.+|++|+|+|+||
T Consensus 405 tvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gR 470 (613)
T COG1022 405 TVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGR 470 (613)
T ss_pred CcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeec
Confidence 999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC--CChhhhh
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ--VTFSWLS 613 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~~~--~~~~~~~ 613 (615)
+||+||+++|+||+|+.||+.+.++|.|.+++|+| +++.+++|+|+|+.+.+.+|+..++.. .+..+++
T Consensus 471 kK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~~~l~ 541 (613)
T COG1022 471 KKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDKKFLVALIVPDFDALEKWAESLNKVISASREELA 541 (613)
T ss_pred ccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCCcceEEEEeCCHHHHHHHHHhccccccCCHHHHh
Confidence 99999999999999999999999999999999999 668999999999999999999998854 3454443
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-90 Score=772.72 Aligned_cols=568 Identities=37% Similarity=0.636 Sum_probs=485.9
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEee--------cC------
Q 007169 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRV--------DG------ 106 (615)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~--------~~------ 106 (615)
..++++++.+.+++. +|||+... .+... +.++..|+.++|+++++++||++|++++... ++
T Consensus 25 ~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~--~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~ 99 (696)
T PLN02387 25 KKRGVPVDVGGEPGY--AIRNARFP-ELVET--PWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKL 99 (696)
T ss_pred ccceecCCCCCCCCC--ceecCccc-ccccc--CCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccc
Confidence 347888886655553 59999855 44433 3567899999999999999999999876311 22
Q ss_pred ccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccc
Q 007169 107 TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (615)
Q Consensus 107 ~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~ 186 (615)
..++|+|+||+|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||||++++++++.++|+++++
T Consensus 100 ~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~ 179 (696)
T PLN02387 100 HLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV 179 (696)
T ss_pred cCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCC
Confidence 13568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCC-CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEecc
Q 007169 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265 (615)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TS 265 (615)
+++|++.+..+.+.+....++.++.++.+++....... .....++.+.+|+++...+.....+...+.++|+++|+|||
T Consensus 180 ~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTS 259 (696)
T PLN02387 180 TTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTS 259 (696)
T ss_pred CEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecC
Confidence 99999988888888777778889999998764321110 01123456778999887665433333445789999999999
Q ss_pred CCCCCCcEEEecHHHHHHHHHhhccC-cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC----C-----hHHH
Q 007169 266 GTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----D-----NMKL 335 (615)
Q Consensus 266 GTTG~PKgv~~th~~l~~~~~~~~~~-~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~----~-----~~~l 335 (615)
||||.||||++||+|+++.+...... ..+.++|++++++|++|++++...+.+++.|+++.+... + +..+
T Consensus 260 GTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~ 339 (696)
T PLN02387 260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGT 339 (696)
T ss_pred CCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCc
Confidence 99999999999999999888776544 357889999999999999999887777888888876331 1 2345
Q ss_pred HHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcC-----CCCCchhhHHhHHHHHhhcC
Q 007169 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-----KNPSPMWDRLVFNKIKDKLG 410 (615)
Q Consensus 336 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~g 410 (615)
++++++++||+++++|++|+++.+.+...+...+.+++.+|+.++..++..+... ...+.+||.++|+++++.+|
T Consensus 340 ~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 419 (696)
T PLN02387 340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419 (696)
T ss_pred hhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhC
Confidence 6789999999999999999999999888888889999999999999887765432 12347899999999999999
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCC
Q 007169 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (615)
Q Consensus 411 ~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~ 490 (615)
+++|.+++||+|+++++.++++..+|++++++||+||+++.++...+.+...+++|+|+|+++++|+|++++++...+.+
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~ 499 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP 499 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence 99999999999999999999998889999999999999877766666666788999999999999999888888777776
Q ss_pred CCcceEEEecCcccccccCChhhhhhcc--CCCC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHh
Q 007169 491 CPRGEICVRGPLIFKGYYKDEIQTKEVI--DEDG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566 (615)
Q Consensus 491 ~~~GEi~vrg~~v~~GY~~~~~~t~~~~--~~~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~ 566 (615)
.|.|||+||||++|+|||++|+.|+++| +++| ||+|||+|++|+||+|+|+||+||+||+++|+||+|++||++|.
T Consensus 500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~ 579 (696)
T PLN02387 500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS 579 (696)
T ss_pred CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh
Confidence 6789999999999999999999999998 4456 99999999999999999999999999987899999999999999
Q ss_pred cCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC-CChhhhh
Q 007169 567 KCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ-VTFSWLS 613 (615)
Q Consensus 567 ~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~~~-~~~~~~~ 613 (615)
+||.|.+|+|+|++.+.+++|+|+|+++.+..|++++++. .++.++|
T Consensus 580 ~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~ 627 (696)
T PLN02387 580 VSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELC 627 (696)
T ss_pred cCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHh
Confidence 9999999999999988999999999999999999999986 5666655
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-88 Score=757.97 Aligned_cols=555 Identities=39% Similarity=0.699 Sum_probs=461.2
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHH
Q 007169 52 DTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131 (615)
Q Consensus 52 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~ 131 (615)
.+.++++||++.....+.. +.+...|+.++|++.++++||++|++++...++..++++++||+||.++++++|++|.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~ 97 (666)
T PLN02614 21 RPSVGPVYRSIFAKDGFPN---PIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLR 97 (666)
T ss_pred CCCCCCcccCcccccccCC---CCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHH
Confidence 4667889999875555431 3456789999999999999999999875211222345678999999999999999999
Q ss_pred HcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhcc-CCCce
Q 007169 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVR 210 (615)
Q Consensus 132 ~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~l~ 210 (615)
++|+++||+|+|+++|++||++++|||+++|+++||++++++++++.+++++++++++|++.+....+...... .+.++
T Consensus 98 ~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~ 177 (666)
T PLN02614 98 SVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMK 177 (666)
T ss_pred HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999988765555433322 23367
Q ss_pred EEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc
Q 007169 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290 (615)
Q Consensus 211 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~ 290 (615)
.++.++.............+..+.+|+++...+.....+.....++|+++|+|||||||.||||++||+|+++.+.+...
T Consensus 178 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~ 257 (666)
T PLN02614 178 TVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIR 257 (666)
T ss_pred EEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence 77777542211000011123446788888765432222223356899999999999999999999999999988765443
Q ss_pred C-----cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHh
Q 007169 291 G-----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365 (615)
Q Consensus 291 ~-----~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 365 (615)
. ..+.++|++++++|++|++++...+.+++.|+++++.++++..+++++++++||+++++|++|+++++.+...+
T Consensus 258 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 337 (666)
T PLN02614 258 LLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKL 337 (666)
T ss_pred hccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHH
Confidence 3 25678999999999999999876666788999999988899999999999999999999999999999888888
Q ss_pred hcCcchHHHHHHHHHHHHHHHHhcCCCC---CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccc
Q 007169 366 RTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEG 442 (615)
Q Consensus 366 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~ 442 (615)
...+.+++++|+.++..+...++.+... .+++|.++++++++.+|+++|.+++||+++++++.++++...+++++++
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~ 417 (666)
T PLN02614 338 SDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQG 417 (666)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEee
Confidence 8888889999999998887666654322 3677889999999999999999999999999887555544335899999
Q ss_pred cccccccccccccCCCC-CCCCCcCCCCCCeeEEEeecCCC--CCCCCCCCCCcceEEEecCcccccccCChhhhhhccC
Q 007169 443 YGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEM--NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (615)
Q Consensus 443 YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~--~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~ 519 (615)
||+||+++.++...+.+ ...+++|+|+|+++++|+|++++ ..++.|. .|||+||||++|.|||++|+.|+++|
T Consensus 418 YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~---~GEl~vrGp~v~~GY~~~pe~T~~~f- 493 (666)
T PLN02614 418 YGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTP---RGEICIRGKTLFSGYYKREDLTKEVL- 493 (666)
T ss_pred CchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCC---CceEEEcCCcccccccCCHHHhhhhh-
Confidence 99999986555444433 35689999999999999996554 3455554 89999999999999999999999999
Q ss_pred CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHH
Q 007169 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAW 599 (615)
Q Consensus 520 ~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~ 599 (615)
.||||||||+|++|+||+|+|+||+||+||+++|+||+|++||++|.+||+|.+|+|+|++.+.+++|+|+|+++.+.+|
T Consensus 494 ~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~~l~alvv~~~~~~~~~ 573 (666)
T PLN02614 494 IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFESFLVAIANPNQQILERW 573 (666)
T ss_pred ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcceEEEEEeCCHHHHHHH
Confidence 69999999999999999999999999999987899999999999999999999999999998889999999999999999
Q ss_pred HHHcCCCCChhhhh
Q 007169 600 AASEGIQVTFSWLS 613 (615)
Q Consensus 600 ~~~~~~~~~~~~~~ 613 (615)
++++++..+++++|
T Consensus 574 ~~~~~~~~~~~~~~ 587 (666)
T PLN02614 574 AAENGVSGDYNALC 587 (666)
T ss_pred HHhcCCCcCHHHHh
Confidence 99999876666654
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-88 Score=753.41 Aligned_cols=555 Identities=42% Similarity=0.735 Sum_probs=466.7
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHH
Q 007169 52 DTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131 (615)
Q Consensus 52 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~ 131 (615)
.++++++||++...+.+.+. .++..|++++|.+.++++|+++|++.+...++..++++++||+||.++++++|++|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~---~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~ 95 (660)
T PLN02861 19 KPSAGPVYRSIYAKDGLLDL---PADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIR 95 (660)
T ss_pred CCCCCCcccccccccccccC---CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHH
Confidence 46678999999877776542 357889999999999999999999875322333456788999999999999999999
Q ss_pred HcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCC-Cce
Q 007169 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TVR 210 (615)
Q Consensus 132 ~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-~l~ 210 (615)
++|+++||+|+|+++|++||+++++||+++|+++|||+++++.+++.++|++++++++|++....+.+......++ .++
T Consensus 96 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~ 175 (660)
T PLN02861 96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLK 175 (660)
T ss_pred HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999998877666665554443 578
Q ss_pred EEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc
Q 007169 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290 (615)
Q Consensus 211 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~ 290 (615)
.++.++.............+....+|+++...+... ....+..++|+++|+|||||||.||||++||+++++.+.....
T Consensus 176 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~ 254 (660)
T PLN02861 176 TIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDH 254 (660)
T ss_pred EEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHh
Confidence 888876432110001111234557888887654321 2223456899999999999999999999999999988766544
Q ss_pred Ccc-----cCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHh
Q 007169 291 GTK-----FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365 (615)
Q Consensus 291 ~~~-----~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 365 (615)
.+. +.++|++++++|++|++++...+.+++.|++++++++++..++++|++++||+++++|++|+++++.+...+
T Consensus 255 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 334 (660)
T PLN02861 255 LLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKI 334 (660)
T ss_pred ccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHH
Confidence 332 468899999999999999887777899999999988899999999999999999999999999999999999
Q ss_pred hcCcchHHHHHHHHHHHHHHHHhcCCCC---CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-cccc
Q 007169 366 RTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTE 441 (615)
Q Consensus 366 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~ 441 (615)
...+.+++.+|+++++.+...+..+... .+.++.++|+++++.+|+++|.+++||+|+++++.++++ .++. .+++
T Consensus 335 ~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-~~~~~~l~~ 413 (660)
T PLN02861 335 SSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-VTSCSVLSQ 413 (660)
T ss_pred hccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-HHcCCCeeE
Confidence 9999999999999999998877655322 356788899999999999999999999999999876554 4564 7999
Q ss_pred ccccccccccccccCCCC-CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC
Q 007169 442 GYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520 (615)
Q Consensus 442 ~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~ 520 (615)
+||+||+++.++.....+ ...+++|+|+|+++++|+|++++++.... +.+.|||+|||+++|.|||++|+.|+++| .
T Consensus 414 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~-~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~ 491 (660)
T PLN02861 414 GYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALS-DVPRGEICLRGNTLFSGYHKRQDLTEEVL-I 491 (660)
T ss_pred ecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCC-CCCceeEEEcCCcccccccCCHHHHHhhh-h
Confidence 999999986655443332 35689999999999999996554432211 23489999999999999999999999999 6
Q ss_pred CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 007169 521 DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (615)
Q Consensus 521 ~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~ 600 (615)
||||+|||+|++|+||+|+|+||+||+||+++|+||+|++||++|.+||.|.+|+|+|++.++.++|+|+|+++++.+|+
T Consensus 492 dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~ 571 (660)
T PLN02861 492 DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWA 571 (660)
T ss_pred ccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCcceeEEEEEcCHHHHHHHH
Confidence 99999999999999999999999999999878999999999999999999999999999877899999999999999999
Q ss_pred HHcCCCCChhhhh
Q 007169 601 ASEGIQVTFSWLS 613 (615)
Q Consensus 601 ~~~~~~~~~~~~~ 613 (615)
+++++..+++++|
T Consensus 572 ~~~~~~~~~~~~~ 584 (660)
T PLN02861 572 ANNNKTGDFKSLC 584 (660)
T ss_pred HHcCCCCCHHHHh
Confidence 9998765666543
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-87 Score=749.73 Aligned_cols=566 Identities=42% Similarity=0.703 Sum_probs=477.1
Q ss_pred ceEEcCCcCC-----CCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHH
Q 007169 43 YSVVLPEKLD-----TGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 117 (615)
Q Consensus 43 ~~~~~~~~~~-----~~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~ 117 (615)
|++++..... ++++++||+....+.+.. ..++..|++++|.+.++++|+++|++++...++..++++|+||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~ 80 (660)
T PLN02430 4 FAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPP---IDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYK 80 (660)
T ss_pred eeeeecccCCCCCCCCCCCCccccccccccccC---CCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHH
Confidence 5566653333 348899999876655532 34688999999999999999999998763223434567889999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchH
Q 007169 118 EAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN 197 (615)
Q Consensus 118 el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~ 197 (615)
|+.+++.++|++|.+.|+++||+|+|+++|++||+++++||+++|+++||++++++++++.+++++++++++|++.....
T Consensus 81 el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~ 160 (660)
T PLN02430 81 EVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIK 160 (660)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876443
Q ss_pred HHH-hhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEe
Q 007169 198 SLL-SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVL 276 (615)
Q Consensus 198 ~l~-~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~ 276 (615)
... ......+.++.+|.+++............+...++|+++...+........+..++|+++|+|||||||.||||++
T Consensus 161 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~l 240 (660)
T PLN02430 161 ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240 (660)
T ss_pred HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEe
Confidence 322 2233356678888886532211111112244567899988766543333344578999999999999999999999
Q ss_pred cHHHHHHHHHhhccC-----cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeech
Q 007169 277 SHGNLIASVAGATLG-----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP 351 (615)
Q Consensus 277 th~~l~~~~~~~~~~-----~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P 351 (615)
||+|+++.+.+.... ..+.++|++++++|++|++++...+.++..|+++++++.++..+++++++++||++.++|
T Consensus 241 th~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP 320 (660)
T PLN02430 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVP 320 (660)
T ss_pred ecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecH
Confidence 999999877654321 246789999999999999999877778899999999888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC---CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHH
Q 007169 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428 (615)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 428 (615)
++|+++++.+...+...+.+++.+|+.++..|...+..+.. ...++|.++|+++++.+|+++|.+++||+++++++.
T Consensus 321 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~ 400 (660)
T PLN02430 321 RVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE 400 (660)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH
Confidence 99999999999988888899999999999999988876543 246789999999999999999999999999999998
Q ss_pred HHHHHHhCCccccccccccccccccccCCCC-CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccc
Q 007169 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGY 507 (615)
Q Consensus 429 ~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY 507 (615)
++++...++.++++||+||+++.++...+.+ ...+++|+|.++++++|+|++++++.+.+.+ +.|||+|||++++.||
T Consensus 401 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~-~~GEi~vrg~~v~~GY 479 (660)
T PLN02430 401 EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGY 479 (660)
T ss_pred HHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCC-CcceEEecCCCccccc
Confidence 8877654578999999999987766554443 4578999999999999999777766554442 3799999999999999
Q ss_pred cCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEE
Q 007169 508 YKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVA 587 (615)
Q Consensus 508 ~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va 587 (615)
|++|+.|+++| .||||||||+|++|+||+|+|+||+||+||+++|++|+|++||++|.+||.|.+|+|+|++.+++++|
T Consensus 480 ~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~~~~~~~A 558 (660)
T PLN02430 480 YKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDSFKSMLVA 558 (660)
T ss_pred cCChHHhhhhh-hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecCCcceEEE
Confidence 99999999999 69999999999999999999999999999988899999999999999999999999999877789999
Q ss_pred EEEeCHHHHHHHHHHcCCCCChhhhh
Q 007169 588 IVSVDQDALKAWAASEGIQVTFSWLS 613 (615)
Q Consensus 588 ~vv~~~~~l~~~~~~~~~~~~~~~~~ 613 (615)
+|+|+++.+.+|++++++..+++++|
T Consensus 559 ~vv~~~~~~~~~~~~~~~~~~~~~~~ 584 (660)
T PLN02430 559 VVVPNEENTNKWAKDNGFTGSFEELC 584 (660)
T ss_pred EEEcCHHHHHHHHHhCCCCCCHHHHh
Confidence 99999999999999999876655553
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-84 Score=728.28 Aligned_cols=562 Identities=33% Similarity=0.550 Sum_probs=470.6
Q ss_pred CCceEEcCCcCCCCCCccccCCCCCcccccc-CCCCCCCCCHHHHHHHHHHhcCCCceEEEEEe----------ecCc--
Q 007169 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSR-FPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR----------VDGT-- 107 (615)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~----------~~~~-- 107 (615)
..+++++++..+++++++||+....+..... ....++..|++++|.+.++++||++|++++.. .++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~ 109 (700)
T PTZ00216 30 GPQNVPVPGTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKER 109 (700)
T ss_pred CCcceecCCCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccc
Confidence 4478999988888889999987644321111 12345678999999999999999999998621 0111
Q ss_pred ------cCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH
Q 007169 108 ------VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181 (615)
Q Consensus 108 ------~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il 181 (615)
.++++++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|++++|+|+.++++++.+++
T Consensus 110 ~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il 189 (700)
T PTZ00216 110 TMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYAL 189 (700)
T ss_pred cccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhh
Confidence 12578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccceEEEEcccchHHHHhhhcc--CCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCcc--CCC-CCCCCCCC
Q 007169 182 NHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS--NLQ-PFSPPKPD 256 (615)
Q Consensus 182 ~~~~~~~vi~~~~~~~~l~~~~~~--~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~~ 256 (615)
++++++++|++......+...... .+.. .++.++..... ....+..+++|+++...+.. ... ...+..++
T Consensus 190 ~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (700)
T PTZ00216 190 RETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENND 264 (700)
T ss_pred hccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcc
Confidence 999999999998766665544332 2333 46666543211 12235567899998876521 111 12345689
Q ss_pred CeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCc-----ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCC
Q 007169 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD 331 (615)
Q Consensus 257 ~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~ 331 (615)
|+++|+|||||||.||||++||+|+++.+.+....+ .+.++|++++++|++|++++......++.|+++++ .+
T Consensus 265 d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~--~~ 342 (700)
T PTZ00216 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GS 342 (700)
T ss_pred cEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE--CC
Confidence 999999999999999999999999998877654432 24678999999999999998776667888888876 46
Q ss_pred hHHHHH-------HHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHH
Q 007169 332 NMKLMD-------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404 (615)
Q Consensus 332 ~~~l~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 404 (615)
+..+.+ ++++++||++.++|++|+++++.+...+...+.+++++|+.++..++..+..+. ..+++|.++|++
T Consensus 343 ~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~v~~~ 421 (700)
T PTZ00216 343 PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK-DTPYWNEKVFSA 421 (700)
T ss_pred HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC-CCchHHHHHHHH
Confidence 666665 789999999999999999999999888888899999999999999988777654 346889999999
Q ss_pred HHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCC
Q 007169 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484 (615)
Q Consensus 405 ~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~ 484 (615)
+++.+|+++|.+++||+++++++.++++..++ +++++||+||+++.++.....+...+++|+|+++++++|+|.++...
T Consensus 422 ~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~ 500 (700)
T PTZ00216 422 PRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKH 500 (700)
T ss_pred HHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhcc
Confidence 99999999999999999999999999988888 99999999999877666666666789999999999999999654322
Q ss_pred CCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHH
Q 007169 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564 (615)
Q Consensus 485 ~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~ 564 (615)
.+.+.+.|||+|+|++++.|||++|+.|+++|+.||||||||+|++|+||+|+|+||+||+||+++|++|+|++||++
T Consensus 501 --~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~ 578 (700)
T PTZ00216 501 --TDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEAL 578 (700)
T ss_pred --CCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHH
Confidence 223335899999999999999999999999999999999999999999999999999999999679999999999999
Q ss_pred HhcCCCcce--EEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCCCChhhhh
Q 007169 565 YAKCKFVGQ--CFVYGDSFNSALVAIVSVDQDALKAWAASEGIQVTFSWLS 613 (615)
Q Consensus 565 l~~~p~V~~--~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~~~~~~~~~~ 613 (615)
|.+||.|.+ ++|++.+++++++|+|+|+++.+.+|++++++..+++++|
T Consensus 579 l~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~ 629 (700)
T PTZ00216 579 YGQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAIL 629 (700)
T ss_pred HhcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHh
Confidence 999999997 5777777789999999999999999999999876676664
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-76 Score=619.63 Aligned_cols=457 Identities=30% Similarity=0.442 Sum_probs=383.0
Q ss_pred HHhcCCC-ceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 007169 89 VDTFRDY-KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG--ISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (615)
Q Consensus 89 a~~~pd~-~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~G--v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (615)
+..++++ +.+++. +.. .+.+||+|+++++.++|.+|.++| +++||+|++++||+++++++++||+..|++.
T Consensus 26 ~~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~ 99 (537)
T KOG1176|consen 26 AFVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVL 99 (537)
T ss_pred ccccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccc
Confidence 3344444 777765 211 246999999999999999999876 8999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee-HHHHHhcCc
Q 007169 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT-YSNLLSQGR 244 (615)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 244 (615)
.|+||.+.+.++.+.+++++++++|++....+.+.+....+. ..++++........ ........+ +.++...+.
T Consensus 100 ~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 174 (537)
T KOG1176|consen 100 NPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--LKIIVLTGDEGVIS---ISDLVEDLDAFEDLMPEGL 174 (537)
T ss_pred cccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--CceEEEecccCccc---cccccccccchhhccccCC
Confidence 999999999999999999999999999999999888776655 34444443211000 000111122 444444333
Q ss_pred cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH-HHHhCc
Q 007169 245 SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGV 323 (615)
Q Consensus 245 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~-~l~~G~ 323 (615)
... ..+.+.+|++.|.|||||||.||||++||++++...........+...|+.++.+|++|++|+...+. .+..|+
T Consensus 175 ~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~ 252 (537)
T KOG1176|consen 175 PDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGT 252 (537)
T ss_pred Ccc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCc
Confidence 222 45567899999999999999999999999999998877666667777999999999999999998877 555666
Q ss_pred EEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhH
Q 007169 324 AVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402 (615)
Q Consensus 324 ~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 402 (615)
++++.+ +++..+++.+++|++|+++++|+++..|.+...
T Consensus 253 ~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~---------------------------------------- 292 (537)
T KOG1176|consen 253 TIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI---------------------------------------- 292 (537)
T ss_pred eEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc----------------------------------------
Confidence 666666 699999999999999999999999999877310
Q ss_pred HHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCCC-CCCCCcCCCCCCeeEEEeecC
Q 007169 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVP 480 (615)
Q Consensus 403 ~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~ 480 (615)
..+...+++|.+.+||+++++++.+++++.++ ..+.++|||||+++.++.+...+ .+++++|.+++++++++.+ +
T Consensus 293 --~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e 369 (537)
T KOG1176|consen 293 --VKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-E 369 (537)
T ss_pred --cCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-C
Confidence 00111269999999999999999999999998 88999999999997777766555 4899999999988888877 7
Q ss_pred CCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHH
Q 007169 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (615)
Q Consensus 481 ~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~ 560 (615)
.+..++.++ .||||+||+++|+|||+||++|++.|+++|||||||+|++|+||+|+|+||+||+||. +|++|+|.|
T Consensus 370 ~g~~l~~~~---~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~-~G~qv~P~E 445 (537)
T KOG1176|consen 370 TGVSLGPNQ---TGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKY-GGEQVSPAE 445 (537)
T ss_pred CCCCCCCCC---ceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheee-CCEEeCHHH
Confidence 777777777 8999999999999999999999999988899999999999999999999999999996 999999999
Q ss_pred HHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHcCC
Q 007169 561 IENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASEGI 605 (615)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~~~ 605 (615)
||++|.+||.|.||+|+|.+|+ +.++|+||.++ +++.+|++++-.
T Consensus 446 iE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~ 499 (537)
T KOG1176|consen 446 IEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLP 499 (537)
T ss_pred HHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCC
Confidence 9999999999999999999987 68999999864 899999997644
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-75 Score=574.84 Aligned_cols=464 Identities=23% Similarity=0.348 Sum_probs=402.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.+.++..+++.||+.|+++.. .+ .++||+|+.+.++++|++|.++|+++||+|+|+.||+.+|+...|
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~l 120 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQL 120 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHH
Confidence 56899999999999999999998861 33 358999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc-----hHHHHhhhc-------------cCCCceEEEEECCC
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLS-------------EVPTVRLIVVIGGI 218 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~-------------~~~~l~~ii~~~~~ 218 (615)
||.++|.+.|++||.+..+++++.|+..+++++|+.... .+.+.++.+ .+|.++++|..+++
T Consensus 121 A~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed 200 (596)
T KOG1177|consen 121 ACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED 200 (596)
T ss_pred HHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence 999999999999999999999999999999999997643 344444443 35778888887743
Q ss_pred CCCCCCCCcCCCceEeeHHHHHhcCccCCC-----CCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcc
Q 007169 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQ-----PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293 (615)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~ 293 (615)
... ...+.++|++..+..... ......|||++.|+|||||||.|||+-+||-|++++.......++
T Consensus 201 ~~~---------~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g 271 (596)
T KOG1177|consen 201 HPL---------PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG 271 (596)
T ss_pred CcC---------CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC
Confidence 211 134677888776544221 123457899999999999999999999999999999999888899
Q ss_pred cCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcc
Q 007169 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (615)
Q Consensus 294 ~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 370 (615)
+...++++...||+|++|... .+.++..|++++|+. +++...++.|.++|+|.++++|++|..|++..+
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~-------- 343 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQ-------- 343 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchh--------
Confidence 999999999999999999664 678999999999976 899999999999999999999999999886311
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-cccccccccccc
Q 007169 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS 449 (615)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~ 449 (615)
..+...+++|.++.||+|+|+++++.+...++. .+..+||+|||+
T Consensus 344 ----------------------------------~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts 389 (596)
T KOG1177|consen 344 ----------------------------------KQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETS 389 (596)
T ss_pred ----------------------------------hccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccC
Confidence 111112589999999999999999999986654 478899999999
Q ss_pred ccccccCCCC---CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeec
Q 007169 450 CLISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (615)
Q Consensus 450 ~~~~~~~~~~---~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~T 526 (615)
++.+...+.| ....++|..+++.|.+|+| .++...+.+. .||||+||+++|.|||+++++|.++.+.|.||+|
T Consensus 390 ~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~---~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~T 465 (596)
T KOG1177|consen 390 PVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGT---KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDT 465 (596)
T ss_pred cceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCC---CceEEEEechhheeecCCcccchhhcccccceec
Confidence 8888777666 4567899999999999999 6677777777 7999999999999999999999999999999999
Q ss_pred ccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHH
Q 007169 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDA 595 (615)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~ 595 (615)
||+|.+|++|+++|+||.||||+ ++||+|+|.|||+.|.+||.|.++.|+|.+|+ +.++|.|-+. .|+
T Consensus 466 GDi~~m~enG~i~iVGRskdmI~-rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~ 544 (596)
T KOG1177|consen 466 GDIAVMDENGTIEIVGRSKDMII-RGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAET 544 (596)
T ss_pred CceEEEcCCCcEEEEEcccCeEE-eCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHH
Confidence 99999999999999999999999 69999999999999999999999999999876 5788888763 478
Q ss_pred HHHHHHHc
Q 007169 596 LKAWAASE 603 (615)
Q Consensus 596 l~~~~~~~ 603 (615)
+++|||.+
T Consensus 545 lKa~Ck~k 552 (596)
T KOG1177|consen 545 LKAMCKGK 552 (596)
T ss_pred HHHHHhcc
Confidence 99999987
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=614.70 Aligned_cols=463 Identities=31% Similarity=0.466 Sum_probs=389.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
....++.+.|.++++++|+++|+.+. +... .+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 35679999999999999999999875 3321 5999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|++++|+++.+..+++.++++++++++++++....+.+.......+....++.......... .+
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 150 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP----------IT 150 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEeccccccccc----------cc
Confidence 99999999999999999999999999999999999998855555554433333333332222110000 24
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcc--cCCCcEEEEcCChHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~--~~~~d~~l~~lPl~h~~~~~ 313 (615)
++++..............+++|+++|+|||||||.||||++||+|++.+.......+. +.++|++++++|++|++|+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~ 230 (534)
T COG0318 151 LEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLI 230 (534)
T ss_pred HHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHH
Confidence 5555333222222222267899999999999999999999999999999888877777 89999999999999999999
Q ss_pred HHHH-HHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 314 NQVM-TVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 314 ~~~~-~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
..+. .++.|+++++.+ +++..++..+.++++|++.++|+++..+++.....
T Consensus 231 ~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~------------------------- 285 (534)
T COG0318 231 VGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKD------------------------- 285 (534)
T ss_pred HHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccC-------------------------
Confidence 8665 599999999987 79999999999999999999999999987631110
Q ss_pred CCCCCchhhHHhHHHHHhhcCC-cEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCCC--CCCCCc
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGG-RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGD--NLSGHV 465 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~-~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~--~~~~~v 465 (615)
+.... ++|.+++||+++++++.+++++.|+ ..++++||+||+++.++.....+ ...+++
T Consensus 286 -----------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 348 (534)
T COG0318 286 -----------------DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSV 348 (534)
T ss_pred -----------------ccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcc
Confidence 00002 4999999999999999999999998 47999999999998777666655 467888
Q ss_pred CCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 007169 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (615)
Q Consensus 466 G~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (615)
|.|+|+++++|+|.++....+ |. .|||+||||+|+.|||++|+.|++.|+.+|||+|||+|++|+||+++|+||.|
T Consensus 349 G~~~pg~~v~Ivd~~~~~~~p-g~---vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~k 424 (534)
T COG0318 349 GRPLPGVEVRIVDPDGGEVLP-GE---VGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLK 424 (534)
T ss_pred cccCCCcEEEEEeCCCCccCC-CC---ceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccc
Confidence 999999999999966554444 54 89999999999999999999999999667999999999999999999999999
Q ss_pred CeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHHHHHHHHH
Q 007169 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDALKAWAAS 602 (615)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~l~~~~~~ 602 (615)
|+|+ ++|+||+|.+||+++.+||.|.+|+|+|.+++ +.++|+|+++ ++++.+|+++
T Consensus 425 d~I~-~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~ 491 (534)
T COG0318 425 DLII-SGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRK 491 (534)
T ss_pred eEEE-eCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence 9999 59999999999999999999999999998865 6899999984 6889999987
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-70 Score=632.19 Aligned_cols=495 Identities=19% Similarity=0.343 Sum_probs=415.9
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 007169 67 KLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146 (615)
Q Consensus 67 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~ 146 (615)
.+...+++.+...|+.++|.+.++++|+++|++.+ . ..++++++||+|+.+++.++|++|.++|+++||+|+|+++
T Consensus 415 ~~~~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~ 490 (1452)
T PTZ00297 415 NLPREYNPLAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490 (1452)
T ss_pred hhhhcCCCcccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 45566888889999999999999999999999753 1 1234678999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCC-CCCCC
Q 007169 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QIPSL 225 (615)
Q Consensus 147 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~-~~~~~ 225 (615)
|++||+++++||+++|+++||++++ .+++.+++++++++++|++.+..+.+.++.. +.++.||++++..+ .....
T Consensus 491 N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~ 566 (1452)
T PTZ00297 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAV 566 (1452)
T ss_pred CCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcccccccc
Confidence 9999999999999999999999864 6799999999999999999888877766543 36899999864211 10001
Q ss_pred CcCCCceEeeHHHHHhcCccCCC-CCCCCCCCCeEEEEe---ccCCCCCCcEEEecHHHHHHHHHhhccCc---ccCCCc
Q 007169 226 PITTGVQILTYSNLLSQGRSNLQ-PFSPPKPDDVATICY---TSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (615)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~i~~---TSGTTG~PKgv~~th~~l~~~~~~~~~~~---~~~~~d 298 (615)
....++.+++|+++++.+..... .....+++|++.|+| ||||||.||||++||+|+++.+....... ...++|
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D 646 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH 646 (1452)
T ss_pred cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCC
Confidence 11124567889999987743221 123347889999996 99999999999999999999988765422 356789
Q ss_pred EEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHH
Q 007169 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (615)
Q Consensus 299 ~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (615)
++++++||+|++++...+.+++.|+++++ +++..++++|++++||++++||++|+++.+.+..+....+.+++++|++
T Consensus 647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~ 724 (1452)
T PTZ00297 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER 724 (1452)
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999998777888999999976 5899999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCC--CCcHHHHHHHHHHhCCccccccccccccccccccC
Q 007169 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS--PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (615)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~--~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~ 456 (615)
|++.|.+.+..+...+.++|+++|+++|+.+|+++|.+++||+ +++..+.. ++++..+||+||+. +.+.
T Consensus 725 A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~ 795 (1452)
T PTZ00297 725 AFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPS 795 (1452)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecC
Confidence 9999887777666666899999999999999999999999984 55544433 57788999999953 3344
Q ss_pred CCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCC
Q 007169 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536 (615)
Q Consensus 457 ~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG 536 (615)
+.+... .|.|+|++|+||.++++.++. + ++|||+++ |++||+.|++.+ +||+ +||
T Consensus 796 ~~~~~~--~G~PlpgvEvKI~~~~E~~~~--~---~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~dG 850 (1452)
T PTZ00297 796 EGVFCV--DGTPAPSLQVDLEPFDEPSDG--A---GIGQLVLA-------KKGEPRRTLPIA--AQWK---------RDR 850 (1452)
T ss_pred CCCccc--CCeecCceEEEEcccccccCC--C---CCCeEEEE-------ECCChHHHHHhh--CcCc---------cCC
Confidence 444433 499999999999987665432 1 37999996 458999999854 6775 699
Q ss_pred cEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHH-HHHHHcCCC
Q 007169 537 RLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALK-AWAASEGIQ 606 (615)
Q Consensus 537 ~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~-~~~~~~~~~ 606 (615)
+|+|+||+||+||+++||||+|+.||++|.++|.|.+++|+|++. ..++|+|+|+++.+. +|++++++.
T Consensus 851 ~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~-k~lvALVvpd~e~l~~~wa~~~gi~ 920 (1452)
T PTZ00297 851 TLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS-RPIIAIVSPNRDTVEFEWRQSHCMG 920 (1452)
T ss_pred eEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC-CceEEEEEeCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999984 459999999999999 999999985
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=585.08 Aligned_cols=462 Identities=22% Similarity=0.335 Sum_probs=368.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH
Q 007169 74 DHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI 153 (615)
Q Consensus 74 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~ 153 (615)
......|+.++|.++++++|+++|+.+. + ..+.++++||+||.++++++|++|.+.|+++||+|+|+++|++||++
T Consensus 34 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~ 109 (614)
T PRK08180 34 LGDYPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHAL 109 (614)
T ss_pred CCCcCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHH
Confidence 3345679999999999999999999764 2 12346789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCC-----HHHHHHHHHhccceEEEEcccc-hHHHHhhhccCCCceEEEEECCCCCCCCCCCc
Q 007169 154 VDHACSAYSFISVPLYDTLG-----PDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (615)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~-----~~~l~~il~~~~~~~vi~~~~~-~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (615)
+++||+++|++++|+++.++ .+++.+++++++++++|++... .......... ...+ ++..+....
T Consensus 110 ~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~-~i~~~~~~~------- 180 (614)
T PRK08180 110 LALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVE-VVAVRGAVP------- 180 (614)
T ss_pred HHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCce-EEEecCCCC-------
Confidence 99999999999999999998 7999999999999999997542 2221111111 1122 333332110
Q ss_pred CCCceEeeHHHHHhcCccCC--CCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccC--CCcEEEEc
Q 007169 228 TTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYISY 303 (615)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~--~~d~~l~~ 303 (615)
.....+|+++........ .......++|+++|+|||||||.||||++||+++++.+......+.+. .+++++++
T Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~ 258 (614)
T PRK08180 181 --GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDW 258 (614)
T ss_pred --CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEe
Confidence 001245666654321111 111234679999999999999999999999999998887766555543 56899999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec--CC---hHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHH
Q 007169 304 LPLAHIYERAN-QVMTVYSGVAVGFYQ--GD---NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (615)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~i~~~~--~~---~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (615)
+|++|.+++.. .+.+++.|+++++.+ ++ +..+++.++++++|+++++|++|..|++.+...
T Consensus 259 lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~------------- 325 (614)
T PRK08180 259 LPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERD------------- 325 (614)
T ss_pred cchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhc-------------
Confidence 99999999865 456899999999875 23 457889999999999999999999987743210
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH----hC--Ccccccccccccccc
Q 007169 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG--GRVTEGYGMTETSCL 451 (615)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~----~g--~~v~~~YG~TE~~~~ 451 (615)
...++...+++|.+++||+++++++.+++++. +| ++++++||+||++++
T Consensus 326 -------------------------~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~ 380 (614)
T PRK08180 326 -------------------------AALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPS 380 (614)
T ss_pred -------------------------hhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCc
Confidence 00111223689999999999999999998875 34 679999999999876
Q ss_pred ccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEE
Q 007169 452 ISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (615)
Q Consensus 452 ~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~ 531 (615)
++.........+++|+|+++++++|+|. +. .|||+|+|++++.|||++|+.|++.|+.||||+|||+|+
T Consensus 381 ~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~---~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~ 449 (614)
T PRK08180 381 ATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GG---KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVR 449 (614)
T ss_pred eEecccccCCCCcccCccCCcEEEEecC--------CC---CcEEEEecCccchhhcCChhHhHhhcccCCceeccceEE
Confidence 6654444556789999999999999983 22 699999999999999999999999998899999999999
Q ss_pred E----ecCCcEEEEccCCCeEEcCCeeeec--hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 007169 532 W----IPGGRLKIIDRKKNIFKLAQGEYIA--AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (615)
Q Consensus 532 ~----~~dG~l~i~GR~~d~ikl~~G~~v~--p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~ 600 (615)
+ |++|+|+|+||+||+||+++|++|+ |.|+|.++.+||+|.+|+|+|.++ +.++|+|+++++....|+
T Consensus 450 ~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~-~~~~a~V~~~~~~~~~~~ 523 (614)
T PRK08180 450 FVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR-DEIGLLVFPNLDACRRLA 523 (614)
T ss_pred ecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCC-CceEEEEEcCHHHHHHHH
Confidence 9 5789999999999999988999776 788999999999999999999984 578899999877544444
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-68 Score=555.78 Aligned_cols=450 Identities=22% Similarity=0.303 Sum_probs=368.7
Q ss_pred HHHHHHHHh-cCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 007169 83 DNFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSA 160 (615)
Q Consensus 83 ~~l~~~a~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (615)
..+.++.+. .+|+.|+++. +...+. +.+||+||.++++++|+.|++ .|+ +||||+|++||.+|.++++|||++
T Consensus 13 n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~r 87 (528)
T COG0365 13 NALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATAR 87 (528)
T ss_pred hhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 356666653 4789999986 333233 789999999999999999987 568 999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc--cCC-CceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 161 YSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS--EVP-TVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 161 ~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~--~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
+|++.+|+.+.++++++.+.+++++++++|+.+........... ... .+..+++++.. + +.|.
T Consensus 88 iGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~~ 153 (528)
T COG0365 88 IGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWYD 153 (528)
T ss_pred cCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccHH
Confidence 99999999999999999999999999999998876543322110 000 01113333221 1 5677
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc-cCcccCCCcEEEEcCChHHHHHHHH-H
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERAN-Q 315 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lPl~h~~~~~~-~ 315 (615)
++.+..... .+..+.+.+|+++|+|||||||+||||+|+|++++....... ..+.+.++|++++..++.|++|... .
T Consensus 154 ~~~~~~~~~-~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v 232 (528)
T COG0365 154 EAVEKASEK-FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSV 232 (528)
T ss_pred HHhhccCCC-CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHH
Confidence 776554332 233447899999999999999999999999998776665444 4577779999999999999999987 6
Q ss_pred HHHHHhCcEEEEecC----ChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 316 VMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 316 ~~~l~~G~~i~~~~~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
+.+|..|++++++.+ ++..+++.|+++++|+|++.|+.++.|.+.-.
T Consensus 233 ~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~----------------------------- 283 (528)
T COG0365 233 FSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL----------------------------- 283 (528)
T ss_pred HHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-----------------------------
Confidence 779999999999872 28899999999999999999999999876210
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (615)
.++...++||.+.+.||||++++.+++.+.+|++|.+.||+||++.+.....+ ..+.++.|.|+||
T Consensus 284 -------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG 349 (528)
T COG0365 284 -------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPG 349 (528)
T ss_pred -------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCC
Confidence 11112269999999999999999999999999999999999999965555544 5566666999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcceEEEecC--cccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 472 ~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~--~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
+++.++|.+ ++.++.++ |+|.++.+ +++++||+|||.+.+++- ++||.|||.+++|+||+++|.||.||+||
T Consensus 350 ~~~~vvdd~-g~~~~~~~----G~Lvi~~~~p~~~~~~w~d~er~~~~y~-~~~y~tGD~~~~DedGy~~i~GR~DDvI~ 423 (528)
T COG0365 350 YAVRRVDDE-GNPVPPGV----GELVVRLPWPGMALTYWNDPERYKEAYF-GRWYRTGDWAERDEDGYFWLHGRSDDVIK 423 (528)
T ss_pred ceeEEECCC-CCcCCCCc----eEEEEeCCCchhhhhhhCCHHHHHHHHh-hceeecCceeEEccCCCEEEEeeccceEe
Confidence 999999944 66665552 99999987 899999999999999983 34999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH--------HHHHHHHHH
Q 007169 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ--------DALKAWAAS 602 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~--------~~l~~~~~~ 602 (615)
+ .|++|.|.|||++|.+||.|.||+|+|.++. +.++|||++.+ +++.+|.++
T Consensus 424 v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~~L~~ei~~~vr~ 486 (528)
T COG0365 424 V-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNELAEEIRRHVAR 486 (528)
T ss_pred c-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 7 7999999999999999999999999998765 46899999873 456666654
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=586.91 Aligned_cols=485 Identities=21% Similarity=0.314 Sum_probs=379.8
Q ss_pred CccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCC
Q 007169 56 WNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI 135 (615)
Q Consensus 56 ~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv 135 (615)
..++|+..++......+++.+...|+.++|+++++++||++|+.+. +...+.++.+||+||.++++++|++|.+.|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv 102 (624)
T PRK12582 26 ISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGL 102 (624)
T ss_pred eEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCC
Confidence 4466665555434444666777889999999999999999999865 3222446789999999999999999999999
Q ss_pred CCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCH-----HHHHHHHHhccceEEEEcccc-hHHHHhhhccCCCc
Q 007169 136 SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP-----DAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTV 209 (615)
Q Consensus 136 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~-----~~l~~il~~~~~~~vi~~~~~-~~~l~~~~~~~~~l 209 (615)
++||+|+++++|+++|+++++||+++|++++|+++.++. +++.+++++++++++|++... .......... ..+
T Consensus 103 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~ 181 (624)
T PRK12582 103 DPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDV 181 (624)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCc
Confidence 999999999999999999999999999999999999875 899999999999999998642 2222222111 123
Q ss_pred eEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCC--CCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHh
Q 007169 210 RLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287 (615)
Q Consensus 210 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~ 287 (615)
+ ++.++.... ......++++........ .......++++++|+|||||||.||||++||+++++.+..
T Consensus 182 ~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~ 251 (624)
T PRK12582 182 T-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAM 251 (624)
T ss_pred e-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHH
Confidence 3 333332110 112245666654322110 0112346789999999999999999999999999887766
Q ss_pred hccCcccCC---CcEEEEcCChHHHHHHHHH-HHHHHhCcEEEEec--CC---hHHHHHHHHhhCCeEEeechHHHHHHH
Q 007169 288 ATLGTKFYP---SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ--GD---NMKLMDDMAALRPTVFCSVPRLYNRIY 358 (615)
Q Consensus 288 ~~~~~~~~~---~d~~l~~lPl~h~~~~~~~-~~~l~~G~~i~~~~--~~---~~~l~~~i~~~~~t~~~~~P~~~~~l~ 358 (615)
......... ++++++++|++|.+++... +.+++.|+++++.+ ++ ...+++.++++++|+++++|+++..|+
T Consensus 252 ~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~ 331 (624)
T PRK12582 252 QEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLA 331 (624)
T ss_pred HHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHH
Confidence 544444333 5899999999999998764 45788999998865 22 345678889999999999999999887
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---
Q 007169 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--- 435 (615)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~--- 435 (615)
+.+... + ..+....++||.+++||+++++++.+++++.+
T Consensus 332 ~~~~~~----~----------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~ 373 (624)
T PRK12582 332 EAMEKD----D----------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRT 373 (624)
T ss_pred HHHhhC----H----------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhh
Confidence 642110 0 00111125899999999999999999998863
Q ss_pred -C--CccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChh
Q 007169 436 -G--GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (615)
Q Consensus 436 -g--~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~ 512 (615)
| ++++++||+||++++++.........+++|+|+|+++++|++ .|+ .|||+|+|++++.|||++|+
T Consensus 374 ~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G~---~GEl~vrg~~v~~GY~~~p~ 442 (624)
T PRK12582 374 TGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VGD---KYEVRVKGPNVTPGYHKDPE 442 (624)
T ss_pred cCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CCC---ceEEEEECCcccccccCCcc
Confidence 3 679999999999876654333445678999999999999974 344 89999999999999999999
Q ss_pred hhhhccCCCCeeecccEEEE-e---cCCcEEEEccCCCeEEcCCeeeechHHHH--HHHhcCCCcceEEEEeeCCCCeEE
Q 007169 513 QTKEVIDEDGWFHTGDIGMW-I---PGGRLKIIDRKKNIFKLAQGEYIAAEKIE--NVYAKCKFVGQCFVYGDSFNSALV 586 (615)
Q Consensus 513 ~t~~~~~~~gw~~TGDlg~~-~---~dG~l~i~GR~~d~ikl~~G~~v~p~~IE--~~l~~~p~V~~~~V~g~~~~~~~v 586 (615)
.|++.|+.+|||+|||+|++ | ++|+|+|+||+||+||+++|++|+|.+|| .++.+||.|.+|+|+|.+ +..+.
T Consensus 443 ~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~-~~~~g 521 (624)
T PRK12582 443 LTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQD-RAFIG 521 (624)
T ss_pred chhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCC-CCcEE
Confidence 99999988999999999998 4 56999999999999998899999998885 688999999999999986 67889
Q ss_pred EEEEeCHHHHHHHHHHcC
Q 007169 587 AIVSVDQDALKAWAASEG 604 (615)
Q Consensus 587 a~vv~~~~~l~~~~~~~~ 604 (615)
++|+|+++.+..++...+
T Consensus 522 ~lv~p~~~~~~~~~~~~~ 539 (624)
T PRK12582 522 LLAWPNPAACRQLAGDPD 539 (624)
T ss_pred EEEecCHHHHHHHHhcCC
Confidence 999999888776665543
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=587.85 Aligned_cols=474 Identities=16% Similarity=0.179 Sum_probs=371.0
Q ss_pred CCCCCCCHHHHHHHHHHh--cCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH
Q 007169 74 DHPEIGTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW 151 (615)
Q Consensus 74 ~~~~~~tl~~~l~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~ 151 (615)
+....++.+++|.++++. +||++|+++. ....+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++||
T Consensus 54 ~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~ 130 (647)
T PTZ00237 54 KGGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEP 130 (647)
T ss_pred CCCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 345677888999888765 7999999875 22222346799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEccc---------chHHHHhhhccCC-CceEEEEECCCCC-
Q 007169 152 LIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ---------TLNSLLSCLSEVP-TVRLIVVIGGIDD- 220 (615)
Q Consensus 152 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~---------~~~~l~~~~~~~~-~l~~ii~~~~~~~- 220 (615)
++++|||+++|++++|+++.++.+++.++|++++++++|++.. ..+.+.+...... ....++.+.....
T Consensus 131 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 210 (647)
T PTZ00237 131 LIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDIT 210 (647)
T ss_pred HHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcc
Confidence 9999999999999999999999999999999999999999752 2233333322111 1334554421110
Q ss_pred ---CCCCC-CcCCCceEeeHHHHHhcCcc----CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHH-HHHHHHhhccC
Q 007169 221 ---QIPSL-PITTGVQILTYSNLLSQGRS----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-LIASVAGATLG 291 (615)
Q Consensus 221 ---~~~~~-~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~-l~~~~~~~~~~ 291 (615)
..... ..........|++++..... .........++|+++|+|||||||.||||+++|++ +++........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~ 290 (647)
T PTZ00237 211 SESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSI 290 (647)
T ss_pred cccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHh
Confidence 00000 00000123457776643211 11122345789999999999999999999999998 44433333444
Q ss_pred cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCC-------hHHHHHHHHhhCCeEEeechHHHHHHHHHHHHH
Q 007169 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD-------NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (615)
Q Consensus 292 ~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~-------~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 364 (615)
.....+|+++++.|++|+.+....+.+++.|+++++++++ +..+++.++++++|+++++|++++.|.+.....
T Consensus 291 ~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 370 (647)
T PTZ00237 291 IEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA 370 (647)
T ss_pred cCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence 5677889999999999987666677899999999998743 578999999999999999999999887621000
Q ss_pred hhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccc
Q 007169 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYG 444 (615)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG 444 (615)
. .. ......++||.+++||+++++++.+++++.+|+++++.||
T Consensus 371 ~--------------------------~~-----------~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG 413 (647)
T PTZ00237 371 T--------------------------II-----------RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYG 413 (647)
T ss_pred c--------------------------cc-----------ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeec
Confidence 0 00 0000115899999999999999999999999999999999
Q ss_pred cccccccccccCCC-CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecC---cccccccCChhhhhhccCC
Q 007169 445 MTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDE 520 (615)
Q Consensus 445 ~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~---~v~~GY~~~~~~t~~~~~~ 520 (615)
+||+++.++...+. ....+++|+|+|+++++|+| ++++.++.|+ .|||+++|| +++.|||+|++.+++.|+.
T Consensus 414 ~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge---~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~ 489 (647)
T PTZ00237 414 QTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVNE---IGEVAFKLPMPPSFATTFYKNDEKFKQLFSK 489 (647)
T ss_pred hHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCC---ceEEEEeccCCchhhCceeCCHHHHHHHHhC
Confidence 99998655433222 23458999999999999999 5677777776 899999986 7899999999999988854
Q ss_pred -CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 521 -DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 521 -~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.|++|+|.+++ +.++|+|+++
T Consensus 490 ~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~ 564 (647)
T PTZ00237 490 FPGYYNSGDLGFKDENGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLK 564 (647)
T ss_pred CCCEEECCcEEEECCCCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEec
Confidence 799999999999999999999999999996 7999999999999999999999999998864 6899999976
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-67 Score=577.90 Aligned_cols=467 Identities=22% Similarity=0.269 Sum_probs=377.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|.+.++++|+++|+... + +.+||+||.+++.++|.+|.+.|+++||+|+|+++|+++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l 75 (563)
T PLN02860 5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL 75 (563)
T ss_pred hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4468999999999999999998643 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhh-ccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
||+++|++++||++.++.+++.++++++++++++++........... ..++.++.++.++....... .....+..
T Consensus 76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~ 151 (563)
T PLN02860 76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLT 151 (563)
T ss_pred HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccc
Confidence 99999999999999999999999999999999999876533222221 23455555555543211000 00001122
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
++++...............++++++|+|||||||.||||++||++++.........+++.++|++++.+|++|++++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 231 (563)
T PLN02860 152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231 (563)
T ss_pred cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHH
Confidence 22222211111111123467899999999999999999999999998877766666788899999999999999998877
Q ss_pred HHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 007169 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (615)
Q Consensus 316 ~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (615)
+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+......
T Consensus 232 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------- 282 (563)
T PLN02860 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM----------------------------- 282 (563)
T ss_pred HHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-----------------------------
Confidence 88899999998877 799999999999999999999999998876321000
Q ss_pred chhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC--------------
Q 007169 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-------------- 459 (615)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-------------- 459 (615)
......++|.+++||+++++++.+.+++.| ++++++.||+||+++.++.....+
T Consensus 283 -----------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (563)
T PLN02860 283 -----------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVN 351 (563)
T ss_pred -----------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhc
Confidence 000115899999999999999999999988 789999999999976544322111
Q ss_pred ---------CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEE
Q 007169 460 ---------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (615)
Q Consensus 460 ---------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg 530 (615)
....++|+|+++++++|++.+ .+. .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|
T Consensus 352 ~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~ 422 (563)
T PLN02860 352 QTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSR---VGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIG 422 (563)
T ss_pred ccccccccccCCcccCCccCCcEEEEecCC------CCc---eeEEEEecCcccccccCCccccchhccCCCeEEccceE
Confidence 112378999999999999843 333 89999999999999999999999999889999999999
Q ss_pred EEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH--------------
Q 007169 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------------- 593 (615)
Q Consensus 531 ~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------------- 593 (615)
++|+||+++|+||+||+||+ +|++|+|.+||+++.+||+|.+++|+|.+++ +.++|+|++++
T Consensus 423 ~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~ 501 (563)
T PLN02860 423 WIDKAGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKK 501 (563)
T ss_pred EEcCCCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcc
Confidence 99999999999999999996 9999999999999999999999999998754 58999998653
Q ss_pred ------HHHHHHHHHcCCC
Q 007169 594 ------DALKAWAASEGIQ 606 (615)
Q Consensus 594 ------~~l~~~~~~~~~~ 606 (615)
+.+.+|+++++++
T Consensus 502 ~~~~~~~~l~~~~~~~~L~ 520 (563)
T PLN02860 502 NLTLSSETLRHHCREKNLS 520 (563)
T ss_pred cccccHHHHHHHHhhCccc
Confidence 4678888876664
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=573.40 Aligned_cols=477 Identities=23% Similarity=0.311 Sum_probs=386.7
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|++++|.+.++++|+++|+.+... ++.....+++||+||.+++.++|++|.++|+++||+|+++++|+++|++++|
T Consensus 23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 456899999999999999999987411 1112234679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc-----hHHHHhhhccCCCceEEEEECCCCCCC--CCCC---
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQI--PSLP--- 226 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~~~~~--~~~~--- 226 (615)
||+++| +++|+++.++++++.+++++++++++|++... .+.+.......+.++.++.++...... ....
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence 999999 56899999999999999999999999997543 345555555667788887776432100 0000
Q ss_pred --cCCCceEeeHHHHHhcCccCC-CCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEc
Q 007169 227 --ITTGVQILTYSNLLSQGRSNL-QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303 (615)
Q Consensus 227 --~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 303 (615)
...+..+..|.+.+....... .......++++++|+|||||||.||||++||+++++.+......+.+.++|++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 260 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG 260 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 002233456766655433221 12233467999999999999999999999999999888776666778899999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC----C---hHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHH
Q 007169 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG----D---NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (615)
Q Consensus 304 lPl~h~~~~~~-~~~~l~~G~~i~~~~~----~---~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 375 (615)
+|++|.++... .+.+++.|+++++.+. + ...+++.++++++|++.++|+++..+.+...
T Consensus 261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------- 327 (632)
T PRK07529 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV------------- 327 (632)
T ss_pred cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------
Confidence 99999999875 5678999999998751 2 3578899999999999999999998865210
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccccccc
Q 007169 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (615)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~ 455 (615)
.....+++|.+++||+++++++.+++++.+|++++++||+||++++++..
T Consensus 328 ------------------------------~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~ 377 (632)
T PRK07529 328 ------------------------------DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVN 377 (632)
T ss_pred ------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccC
Confidence 00011589999999999999999999999999999999999998766655
Q ss_pred CCC-CCCCCCcCCCCCCeeEEEeecCC-C---CCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEE
Q 007169 456 DEG-DNLSGHVGSPNAACEIKLVDVPE-M---NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (615)
Q Consensus 456 ~~~-~~~~~~vG~p~~~~ev~ivd~~~-~---~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg 530 (615)
... ....+++|.|+|+++++|+..++ + ..++.|+ .|||+|+|++++.||++++ .+.+.|..+|||+|||+|
T Consensus 378 ~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~---~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg 453 (632)
T PRK07529 378 PPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDE---VGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLG 453 (632)
T ss_pred CccccccCCCcccccCCceEEEEEcCCCCcccccCCCCC---ceEEEEECCCccccccCCc-cccccccCCCceEcCcEE
Confidence 433 24678999999999999975433 3 4556665 8999999999999999865 456666678999999999
Q ss_pred EEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHH
Q 007169 531 MWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAA 601 (615)
Q Consensus 531 ~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~ 601 (615)
++|+||+++|.||+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++. +.++|+|++. ++++.+|++
T Consensus 454 ~~d~dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~ 532 (632)
T PRK07529 454 RIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFAR 532 (632)
T ss_pred EEcCCceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHH
Confidence 99999999999999999996 9999999999999999999999999997754 5789999864 578899988
Q ss_pred Hc
Q 007169 602 SE 603 (615)
Q Consensus 602 ~~ 603 (615)
++
T Consensus 533 ~~ 534 (632)
T PRK07529 533 DH 534 (632)
T ss_pred Hh
Confidence 76
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-66 Score=578.32 Aligned_cols=478 Identities=17% Similarity=0.207 Sum_probs=373.1
Q ss_pred CCCCHHHHHHHHHH-hcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
..+..+++|.++++ .+|+++|+++. ....+..+.+||+||.+++.++|++|++.|+++||+|+|+++|++|+++++
T Consensus 86 ~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~ 162 (666)
T PLN02654 86 KTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAM 162 (666)
T ss_pred EeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34556788888776 48999999874 322334577999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchH---------HHHhhhccC----CCceEEEEECCCCCCC
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN---------SLLSCLSEV----PTVRLIVVIGGIDDQI 222 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~l~~~~~~~----~~l~~ii~~~~~~~~~ 222 (615)
|||+++|++++|+++.++.+++.+++++++++++|++..... .+....... ..+..++..+......
T Consensus 163 lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
T PLN02654 163 LACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMK 242 (666)
T ss_pred HHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccc
Confidence 999999999999999999999999999999999999875421 121111111 1122233322211000
Q ss_pred CCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHH-HHhhccCcccCCCcEEE
Q 007169 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYI 301 (615)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~-~~~~~~~~~~~~~d~~l 301 (615)
.............|+++...... ..+.....++|+++|+|||||||.||||+++|++++.. .......+++.++|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~ 321 (666)
T PLN02654 243 REDTKWQEGRDVWWQDVVPNYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYW 321 (666)
T ss_pred ccccccccCCcccHHHHhhcCCC-CCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEE
Confidence 00000000112346665432211 11223357899999999999999999999999998643 34445567889999999
Q ss_pred EcCChHHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHH
Q 007169 302 SYLPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (615)
Q Consensus 302 ~~lPl~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 375 (615)
+++|+.|+++... .+.+|+.|+++++++ .++..+++.|+++++|++.++|++++.|.+......
T Consensus 322 ~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------- 391 (666)
T PLN02654 322 CTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV---------- 391 (666)
T ss_pred EcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc----------
Confidence 9999999998765 567899999999986 378999999999999999999999998875210000
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Cccccccccccccccc
Q 007169 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLI 452 (615)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~ 452 (615)
.+...++||.++++|+++++++.+++.+.+| +++.+.||+||+++..
T Consensus 392 ------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~ 441 (666)
T PLN02654 392 ------------------------------TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM 441 (666)
T ss_pred ------------------------------ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCee
Confidence 0000148999999999999999999999887 7899999999998766
Q ss_pred cccCCC--CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec--CcccccccCChhhhhhccC--CCCeeec
Q 007169 453 SQLDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (615)
Q Consensus 453 ~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~~--~~gw~~T 526 (615)
+...+. ...++++|.|++|++++|+| ++++.++.+. .|||+|++ |+++.|||+|++.+.+.+. .+|||+|
T Consensus 442 ~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~---~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~T 517 (666)
T PLN02654 442 ITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGEC---SGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFS 517 (666)
T ss_pred eccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCC---ceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEe
Confidence 544432 24678999999999999999 5566665554 79999999 7899999999999887652 2799999
Q ss_pred ccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------H
Q 007169 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------D 594 (615)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~ 594 (615)
||+|++|+||+++|+||+||+||+ +|++|+|.|||+++.+||+|.+++|+|.+++ +.++|+|++.+ +
T Consensus 518 GD~~~~d~dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~ 596 (666)
T PLN02654 518 GDGCSRDKDGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRK 596 (666)
T ss_pred CceEEECCCCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHH
Confidence 999999999999999999999996 8999999999999999999999999998765 57899999753 2
Q ss_pred HHHHHHHHc
Q 007169 595 ALKAWAASE 603 (615)
Q Consensus 595 ~l~~~~~~~ 603 (615)
++.++++++
T Consensus 597 ~l~~~~~~~ 605 (666)
T PLN02654 597 SLILTVRNQ 605 (666)
T ss_pred HHHHHHHHh
Confidence 456666654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-66 Score=576.26 Aligned_cols=475 Identities=19% Similarity=0.264 Sum_probs=385.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...+..+++|.++++++|+++|+++. +...++.+.+||+||.+++.++|++|++.|+++||+|+++++|++|+++++
T Consensus 54 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 130 (625)
T TIGR02188 54 GELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAM 130 (625)
T ss_pred CEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 35567888898888899999999875 322344678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---------hHHHHhhhccCC-CceEEEEECCCCCCCCCC
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVP-TVRLIVVIGGIDDQIPSL 225 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~~ 225 (615)
+||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.+....++ .++.++.++....... .
T Consensus 131 lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 209 (625)
T TIGR02188 131 LACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-W 209 (625)
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-c
Confidence 9999999999999999999999999999999999998653 233444444455 5676777654321110 0
Q ss_pred CcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHh-hccCcccCCCcEEEEcC
Q 007169 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYL 304 (615)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~l 304 (615)
. ......|+++...... ........++++++|+|||||||.||||+++|++++..... ....+++.++|++++.+
T Consensus 210 ~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 285 (625)
T TIGR02188 210 V---EGRDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTA 285 (625)
T ss_pred c---ccccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECC
Confidence 0 0112456666554322 22334467889999999999999999999999998755433 33456788999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHH
Q 007169 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (615)
Q Consensus 305 Pl~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (615)
|++|+.+... .+.++..|+++++++ .++..+++.++++++|++.++|++++.|.+.....
T Consensus 286 ~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 351 (625)
T TIGR02188 286 DVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW-------------- 351 (625)
T ss_pred CchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------------
Confidence 9999988754 567899999999985 37899999999999999999999999886521000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Ccccccccccccccccccc
Q 007169 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (615)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~ 455 (615)
.++...++||.+++||+++++++.+++.+.++ +++++.||+||+++.++..
T Consensus 352 --------------------------~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~ 405 (625)
T TIGR02188 352 --------------------------VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITP 405 (625)
T ss_pred --------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeec
Confidence 00011258999999999999999999998885 7899999999998765544
Q ss_pred CCC--CCCCCCcCCCCCCeeEEEeecCCCCCCC-CCCCCCcceEEEec--CcccccccCChhhhhhccC--CCCeeeccc
Q 007169 456 DEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS-EDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (615)
Q Consensus 456 ~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~-~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD 528 (615)
.+. ....+++|+|+++++++|+| ++++.++ .|+ .|||+|+| |++++|||++++.+.+.+. .+|||+|||
T Consensus 406 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~---~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD 481 (625)
T TIGR02188 406 LPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGE---GGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGD 481 (625)
T ss_pred CCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCC---eEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCc
Confidence 332 34678999999999999999 6667666 665 89999999 6899999999998887763 479999999
Q ss_pred EEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHH
Q 007169 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DAL 596 (615)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l 596 (615)
+|++|+||+++|+||+||+||+ +|++|+|.+||+++.+||+|.|++|+|.+++ +.++|+|++++ +++
T Consensus 482 l~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l 560 (625)
T TIGR02188 482 GARRDKDGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKEL 560 (625)
T ss_pred eEEEcCCCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999999997 8999999999999999999999999997754 57899999753 467
Q ss_pred HHHHHHc
Q 007169 597 KAWAASE 603 (615)
Q Consensus 597 ~~~~~~~ 603 (615)
+++++++
T Consensus 561 ~~~~~~~ 567 (625)
T TIGR02188 561 RKHVRKE 567 (625)
T ss_pred HHHHHhh
Confidence 7888764
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-66 Score=564.96 Aligned_cols=460 Identities=20% Similarity=0.238 Sum_probs=371.1
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++.+.|.+.++++|++.++.+. +. +.+||+||.++++++|+.|.+. +||+|+|+++|+++|+++++
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence 4478999999999999999988643 21 3589999999999999999873 89999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCC-CceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
||+++|++++|+++.++.+++.++|++++++++|++.+..+.+.+...... ....++.+++.... ..
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence 999999999999999999999999999999999998876665544332111 01134443321100 01
Q ss_pred HHHHHhcCc----cC-----CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCCh
Q 007169 236 YSNLLSQGR----SN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (615)
Q Consensus 236 ~~~l~~~~~----~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl 306 (615)
+.+....+. .. ........++++++|+|||||||.||||++||++++.........+.+.++|++++++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence 111100000 00 001223567999999999999999999999999999887776667788899999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 007169 307 AHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (615)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (615)
+|.+++.. .+.++..|+++++.. .++..+++.|+++++|++.++|+++..|++.....
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------- 294 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ------------------- 294 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc-------------------
Confidence 99999875 567899999998875 68999999999999999999999999887632110
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-CC
Q 007169 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-NL 461 (615)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-~~ 461 (615)
....++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++...... ..
T Consensus 295 -----------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 351 (539)
T PRK06334 295 -----------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKH 351 (539)
T ss_pred -----------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCC
Confidence 00115899999999999999999999988 689999999999987666543332 34
Q ss_pred CCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc-CCCCeeecccEEEEecCCcEEE
Q 007169 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI-DEDGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 462 ~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~-~~~gw~~TGDlg~~~~dG~l~i 540 (615)
.+++|+|+++++++|+|.+++..++.|+ .|||+|+|++++.|||++|+.+.... +.+|||+|||+|++|++|+|+|
T Consensus 352 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~ 428 (539)
T PRK06334 352 ESCVGMPIRGMDVLIVSEETKVPVSSGE---TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL 428 (539)
T ss_pred CCcCceecCCCEEEEEcCCCCccCCCCc---eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEE
Confidence 5689999999999999966677788887 89999999999999999998765432 4578999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcce------EEEEeeCCCC-eEEEEEEe--CHHHHHHHHHHcCC
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQ------CFVYGDSFNS-ALVAIVSV--DQDALKAWAASEGI 605 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~------~~V~g~~~~~-~~va~vv~--~~~~l~~~~~~~~~ 605 (615)
.||.||+||+ +|++|+|.|||++|.+||+|.+ ++|+|.+++. .+++++++ +.+++++||+++.+
T Consensus 429 ~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 501 (539)
T PRK06334 429 KGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNSKT 501 (539)
T ss_pred EeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCChHHHHHHHHhcCC
Confidence 9999999996 8999999999999999999998 8889988654 45566653 56788999988644
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=570.01 Aligned_cols=477 Identities=15% Similarity=0.181 Sum_probs=379.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...+..+++|.++++.+|+++|+++. +...+..+.+||+||.+++.++|++|.++|+++||+|+|+++|++|+++++
T Consensus 49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~ 125 (628)
T TIGR02316 49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM 125 (628)
T ss_pred CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34566778898888899999999875 322234567999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---------hHHHHhhhccC-CCceEEEEECCCCCCCCCC
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEV-PTVRLIVVIGGIDDQIPSL 225 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~l~~ii~~~~~~~~~~~~ 225 (615)
+||+++|++++|+++.++.+++.+++++++++++|++... .+.+.++.... +....++.++........
T Consensus 126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~- 204 (628)
T TIGR02316 126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL- 204 (628)
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCc-
Confidence 9999999999999999999999999999999999997642 12222222222 234566666542111000
Q ss_pred CcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHH-HHhhccCcccCCCcEEEEcC
Q 007169 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYL 304 (615)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~-~~~~~~~~~~~~~d~~l~~l 304 (615)
.......|+++.........+.....++++++|+|||||||.||||+++|++++.. .......+++.++|++++.+
T Consensus 205 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 281 (628)
T TIGR02316 205 ---IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSAS 281 (628)
T ss_pred ---ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 00012456666543322112223346799999999999999999999999997644 34444557888999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHH
Q 007169 305 PLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (615)
Q Consensus 305 Pl~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (615)
|+.|+.+... .+.+|+.|+++++++ .++..+++.++++++|+++++|++++.|.+.....
T Consensus 282 ~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 347 (628)
T TIGR02316 282 DVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW-------------- 347 (628)
T ss_pred CCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc--------------
Confidence 9999998754 567899999999986 37889999999999999999999998776520000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC
Q 007169 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458 (615)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~ 458 (615)
+++...++||.+++||+++++++.+++++.++.++++.||+||++..++...+.
T Consensus 348 --------------------------~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~ 401 (628)
T TIGR02316 348 --------------------------LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPG 401 (628)
T ss_pred --------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCC
Confidence 001112589999999999999999999999999999999999998544332221
Q ss_pred ----CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecC---cccccccCChhhhhhcc---CCCCeeeccc
Q 007169 459 ----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGD 528 (615)
Q Consensus 459 ----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~---~v~~GY~~~~~~t~~~~---~~~gw~~TGD 528 (615)
....+++|.|+++++++|+|.++++.++.|+ .|||+++|| +++.|||++++.+.+.+ ..++||+|||
T Consensus 402 ~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~---~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD 478 (628)
T TIGR02316 402 LDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE---KGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD 478 (628)
T ss_pred CCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC---cEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCc
Confidence 2356889999999999999965778787776 899999998 57899999998887654 2478999999
Q ss_pred EEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------------
Q 007169 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------------ 593 (615)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------------ 593 (615)
+|++|+||+|+|+||+||+||+ +|++|+|.|||+++.+||+|.||+|+|.+++ +.++++|++.+
T Consensus 479 ~g~~d~dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~ 557 (628)
T TIGR02316 479 WGIRDEDGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHA 557 (628)
T ss_pred eEEEcCCCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHH
Confidence 9999999999999999999997 8999999999999999999999999998764 57889998652
Q ss_pred --HHHHHHHHHc
Q 007169 594 --DALKAWAASE 603 (615)
Q Consensus 594 --~~l~~~~~~~ 603 (615)
++++++++++
T Consensus 558 ~~~~i~~~~~~~ 569 (628)
T TIGR02316 558 VETGMMDCVVRQ 569 (628)
T ss_pred HHHHHHHHHHHh
Confidence 4677787765
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=563.86 Aligned_cols=457 Identities=21% Similarity=0.261 Sum_probs=382.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|++.++++||++|+.+. + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999753 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+.....+.++.++....... .....+..+++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 192 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE-------PSGSTDETLDD 192 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc-------cCCcCcccHHH
Confidence 99999999999999999999999999999999998877766555444454544433222110 01123456777
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (615)
+...... ...+..+++.++++|||||||.||||+++|+++++.+......+.+.++|++++.+|++|.+++...+.+
T Consensus 193 ~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 269 (549)
T PRK07788 193 LIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLA 269 (549)
T ss_pred HhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHH
Confidence 7654322 1222345788999999999999999999999999988877777788899999999999999999877788
Q ss_pred HHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007169 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (615)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (615)
+..|+++++.. +++..+++.++++++|++.++|+++..+++......
T Consensus 270 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------- 317 (549)
T PRK07788 270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL-------------------------------- 317 (549)
T ss_pred HHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------------
Confidence 99999998876 799999999999999999999999998876311100
Q ss_pred hHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCeeEEE
Q 007169 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKL 476 (615)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~i 476 (615)
.....+++|.+++||+++++++.+++++.+++++++.||+||++..+...... ....+++|+|+++++++|
T Consensus 318 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 389 (549)
T PRK07788 318 --------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKI 389 (549)
T ss_pred --------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEE
Confidence 00011589999999999999999999999999999999999987654433221 245678999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 007169 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (615)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (615)
+| +++..++.|. .|||+|+|+.++.||+++++. + . .+|||+|||+|++|+||+++|.||+||+||+ +|++|
T Consensus 390 ~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~-~G~~v 460 (549)
T PRK07788 390 LD-ENGNEVPRGV---VGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS-GGENV 460 (549)
T ss_pred EC-CCcCCCCCCC---eEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEeccCcceEEE-CCEEE
Confidence 99 5667777776 899999999999999998875 2 2 4799999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+|.+||+++.++|+|.+++|+|.+++ +.++|+|+++ .++++++++++
T Consensus 461 ~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 516 (549)
T PRK07788 461 FPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN 516 (549)
T ss_pred CHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999997765 4789999864 46788888864
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=567.26 Aligned_cols=474 Identities=18% Similarity=0.275 Sum_probs=381.7
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..+..+++|.++++++|+++|+++. +...+..+.+||+||++++.++|++|.+.|+++||+|+|+++|+++++++++
T Consensus 65 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 141 (637)
T PRK00174 65 ELNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAML 141 (637)
T ss_pred EeEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3344577888888999999999875 3222345679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch---------HHHHhhhccCCCceEEEEECCCCCCCCCCCc
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (615)
||+++|++++|+++.++.+++.+++++++++++|+++... +.+.+....++.++.++.++....... .
T Consensus 142 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 218 (637)
T PRK00174 142 ACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-W-- 218 (637)
T ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-c--
Confidence 9999999999999999999999999999999999976532 233333434566777777654221110 0
Q ss_pred CCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHh-hccCcccCCCcEEEEcCCh
Q 007169 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPL 306 (615)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~lPl 306 (615)
.......|+++...... ..+.....++|+++|+|||||||.||||+++|++++..... ....+++.++|++++.+|+
T Consensus 219 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 296 (637)
T PRK00174 219 -VEGRDLWWHELVAGASD-ECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADV 296 (637)
T ss_pred -CCCCcccHHHHHhhcCC-CCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCc
Confidence 01112456666543221 22233456789999999999999999999999998755433 3344678889999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q 007169 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (615)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (615)
+|+.+... .+.+++.|+++++++ .++..+++.|+++++|++.++|++++.+.+.....
T Consensus 297 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------- 360 (637)
T PRK00174 297 GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH---------------- 360 (637)
T ss_pred hHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc----------------
Confidence 99998764 567899999999875 37899999999999999999999999887621000
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---CccccccccccccccccccCC
Q 007169 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLDE 457 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~ 457 (615)
......++||.+++||+++++++.+++.+.++ +++++.||+||+++.++...+
T Consensus 361 ------------------------~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 416 (637)
T PRK00174 361 ------------------------PKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLP 416 (637)
T ss_pred ------------------------cccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCC
Confidence 00001158999999999999999999998886 789999999999876554333
Q ss_pred C--CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec--CcccccccCChhhhhhcc--CCCCeeecccEEE
Q 007169 458 G--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDIGM 531 (615)
Q Consensus 458 ~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDlg~ 531 (615)
. ....+++|+|+++++++|+| ++++.++.|. .|||+|+| |++++|||++++.+.+.+ ..+|||+|||+|+
T Consensus 417 ~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~ 492 (637)
T PRK00174 417 GATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGE---GGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGAR 492 (637)
T ss_pred CCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCC---cEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEE
Confidence 2 24567899999999999999 5667777776 89999999 689999999999888765 3479999999999
Q ss_pred EecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHH
Q 007169 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAW 599 (615)
Q Consensus 532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~ 599 (615)
+|+||+++|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.++. +.++|+|++++ +++.++
T Consensus 493 ~d~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~ 571 (637)
T PRK00174 493 RDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNW 571 (637)
T ss_pred EcCCCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 8999999999999999999999999997754 57999999752 467778
Q ss_pred HHHc
Q 007169 600 AASE 603 (615)
Q Consensus 600 ~~~~ 603 (615)
++++
T Consensus 572 l~~~ 575 (637)
T PRK00174 572 VRKE 575 (637)
T ss_pred HHhh
Confidence 7764
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-64 Score=552.63 Aligned_cols=464 Identities=21% Similarity=0.310 Sum_probs=384.8
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..|+.++|.+.++.+|+++|+++. +...++++.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++|
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la 99 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA 99 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 358999999999999999999875 32223457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc-----hHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCce
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (615)
|+++|++++|+++.++.+++.++++++++++++++... .+.+.+....++.++.++.++...
T Consensus 100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 166 (547)
T PRK13295 100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG------------- 166 (547)
T ss_pred HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------
Confidence 99999999999999999999999999999999998753 233333444556666777665321
Q ss_pred EeeHHHHHhcCc-----c--CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCC
Q 007169 233 ILTYSNLLSQGR-----S--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305 (615)
Q Consensus 233 ~~~~~~l~~~~~-----~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lP 305 (615)
..++.++..... . .........++++++|+|||||||.||||+++|++++..+......+++.++|++++.+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p 246 (547)
T PRK13295 167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASP 246 (547)
T ss_pred ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 123444332110 0 011122346789999999999999999999999999988887777778899999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 007169 306 LAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (615)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (615)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 247 ~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~------------------- 307 (547)
T PRK13295 247 MAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES------------------- 307 (547)
T ss_pred chhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc-------------------
Confidence 999998765 566899999999877 68999999999999999999999998886521100
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCC
Q 007169 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNL 461 (615)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~ 461 (615)
....+++|.+++||+++++++.+++++.+++++++.||+||++.+++..... ...
T Consensus 308 -----------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 364 (547)
T PRK13295 308 -----------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERA 364 (547)
T ss_pred -----------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhc
Confidence 0011589999999999999999999998999999999999998765543322 233
Q ss_pred CCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEE
Q 007169 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 462 ~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (615)
..++|.|+++++++|+| ++++.++.|+ .|||+|+|++++.||+++|+.|++. .+|||+|||+|+++++|++++.
T Consensus 365 ~~~~G~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~ 438 (547)
T PRK13295 365 STTDGCPLPGVEVRVVD-ADGAPLPAGQ---IGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRIS 438 (547)
T ss_pred cCccccccCCcEEEEEC-CCCCCCCCCC---CCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEE
Confidence 56899999999999999 5567777776 8999999999999999999998876 5789999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHcCCC
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASEGIQ 606 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~~~~ 606 (615)
||.||+||+ +|++|+|.+||+++.++++|.+++|+|.++. +.++++|++++ +++.++++++.++
T Consensus 439 gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~ 511 (547)
T PRK13295 439 GRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVA 511 (547)
T ss_pred eccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCc
Confidence 999999996 8999999999999999999999999997654 57899998753 6788888875543
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-66 Score=496.13 Aligned_cols=461 Identities=21% Similarity=0.279 Sum_probs=399.0
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
-.|+.++|.++++++||++|++.. + +.+||+||+++++++|.+|+++|+++||+|.+.++|..|+++++||
T Consensus 27 d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA 97 (542)
T COG1021 27 DRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA 97 (542)
T ss_pred CCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence 378999999999999999999753 2 3489999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEccc-----chHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCce
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-----TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~-----~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (615)
++++|+.+|.--|.....++.+...+++++++|++.. ..+...+...+.+.++++++.++.+..
T Consensus 98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~----------- 166 (542)
T COG1021 98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP----------- 166 (542)
T ss_pred HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence 9999999998888888999999999999999999763 234455567788899999988654321
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (615)
......+........+.++.++++++++..+.||||.||-+..||.....++....+..++++.+++++.+|.+|.|.+
T Consensus 167 -~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfpl 245 (542)
T COG1021 167 -SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPL 245 (542)
T ss_pred -chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCC
Confidence 1112222222222345567788999999999999999999999999999999888888999999999999999999988
Q ss_pred HH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 313 ~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
.. .+..++.|+++++.+ .++...+..|+++++|+...||.+...+++.....
T Consensus 246 ssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~------------------------- 300 (542)
T COG1021 246 SSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE------------------------- 300 (542)
T ss_pred CCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc-------------------------
Confidence 75 677899999999977 89999999999999999999999998888753221
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSP 468 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (615)
....++||.+-+||+.+++++.+++...+||.+.+.+||.|.-...+..... ..-..+-|+|
T Consensus 301 -----------------~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrP 363 (542)
T COG1021 301 -----------------RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRP 363 (542)
T ss_pred -----------------cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCc
Confidence 1122699999999999999999999999999999999999964333222111 1345678999
Q ss_pred C-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 007169 469 N-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (615)
Q Consensus 469 ~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (615)
+ |.-|++|+| ++++++.+|+ .|||..|||..++|||+.|+.++.+|+.+|||+|||+.++|+||+|.+.||.||+
T Consensus 364 lsP~DEvrvvD-~dg~pv~pGE---~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQ 439 (542)
T COG1021 364 LSPDDEVRVVD-ADGNPVAPGE---VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQ 439 (542)
T ss_pred CCCcceeEEec-CCCCCCCCCC---cceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhh
Confidence 8 789999999 7788888887 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----HHHHHHHHHcCCC
Q 007169 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----DALKAWAASEGIQ 606 (615)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----~~l~~~~~~~~~~ 606 (615)
|+ ++||+|..+||||.|..||.|.+|++++.+|+ ++.+|+||+.+ .+++.|+++.|+.
T Consensus 440 IN-RgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlA 505 (542)
T COG1021 440 IN-RGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLA 505 (542)
T ss_pred hc-cccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchh
Confidence 99 79999999999999999999999999998876 78999999754 6899999999985
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=550.53 Aligned_cols=468 Identities=23% Similarity=0.351 Sum_probs=389.1
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..|+.++|.+.++++|+++|+.+. + +.+||+||.+++.++|..|.+. |+++||+|+|+++|+++|+++++
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 79 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence 468999999999999999999864 3 3599999999999999999999 99999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCC---CC----CCC-----
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID---DQ----IPS----- 224 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~---~~----~~~----- 224 (615)
||+++|++++|+++.++.+++.+++++++++++|++....+.+.+....+ .++.++..+... .. ...
T Consensus 80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (546)
T PRK08314 80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAE 158 (546)
T ss_pred HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccc
Confidence 99999999999999999999999999999999999988777666554433 234444332100 00 000
Q ss_pred --CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEE
Q 007169 225 --LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302 (615)
Q Consensus 225 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~ 302 (615)
.....+..+..|++....... .......++++++|+|||||||.||||++||++++..+......+.+..+|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~ 236 (546)
T PRK08314 159 PPLQALAPGGVVAWKEALAAGLA--PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA 236 (546)
T ss_pred cccccccccccccHHHHhcccCC--CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence 000011234566666543221 2233456789999999999999999999999999998887777788899999999
Q ss_pred cCChHHHHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q 007169 303 YLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (615)
Q Consensus 303 ~lPl~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (615)
.+|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.....
T Consensus 237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~------------------ 298 (546)
T PRK08314 237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG------------------ 298 (546)
T ss_pred EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC------------------
Confidence 999999999865 456899999999987 689999999999999999999999987764100
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCC
Q 007169 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN 460 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~ 460 (615)
.+ ....+++|.+++||+++++++.+++.+.+++++++.||+||++...........
T Consensus 299 ----------------~~--------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 354 (546)
T PRK08314 299 ----------------LA--------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP 354 (546)
T ss_pred ----------------cc--------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCC
Confidence 00 001147999999999999999999999899999999999999876655444445
Q ss_pred CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC---CCCeeecccEEEEecCCc
Q 007169 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID---EDGWFHTGDIGMWIPGGR 537 (615)
Q Consensus 461 ~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~---~~gw~~TGDlg~~~~dG~ 537 (615)
..+++|.|+++++++|+|+++++.++.|. .|||+|+|++++.||+++++.|++.|. .++||+|||+|+++++|+
T Consensus 355 ~~~~~G~~~~g~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~ 431 (546)
T PRK08314 355 KLQCLGIPTFGVDARVIDPETLEELPPGE---VGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGY 431 (546)
T ss_pred CCCccCcccCCeEEEEEeCCCCcCCCCCC---ceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCc
Confidence 56789999999999999977788888787 899999999999999999999998873 346999999999999999
Q ss_pred EEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH--------HHHHHHHHHc
Q 007169 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ--------DALKAWAASE 603 (615)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~--------~~l~~~~~~~ 603 (615)
+++.||+||+||+ +|++|+|.+||+++.++|+|.+++|++.++. +.++|+|++++ +++.+||+++
T Consensus 432 l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~ 507 (546)
T PRK08314 432 FFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREH 507 (546)
T ss_pred EEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 9999999999997 8999999999999999999999999997754 57899999753 6788998864
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-64 Score=554.10 Aligned_cols=465 Identities=18% Similarity=0.275 Sum_probs=384.6
Q ss_pred CCCCHHHHHHHHHH-hcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
..+.+++++.+.++ .+|+++|+.+. +.. ..+.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45667788988877 58999999875 322 2357999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|++++|+++.++++++.+++++++++++|++......... ..++.++.++.+++... ......+
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~ 185 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE--------EGPGTLD 185 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC--------CCcCccC
Confidence 9999999999999999999999999999999999998776544322 24556677777654321 0112346
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (615)
+.++...... ..+..+..++++++|+|||||||.||||+++|+++++.+......+.+.++|++++..|++|.++...
T Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 264 (570)
T PRK04319 186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYG 264 (570)
T ss_pred HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHH
Confidence 6666544322 22233456789999999999999999999999999988877777788899999999999999988665
Q ss_pred HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.+.++..|+++++.. +++..+++.|+++++|+++++|.+++.+.+......
T Consensus 265 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------- 317 (570)
T PRK04319 265 IFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV--------------------------- 317 (570)
T ss_pred HHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc---------------------------
Confidence 567899999999875 789999999999999999999999998865210000
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAA 471 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~ 471 (615)
.....+++|.+++||+++++++.+++++.+|.++++.||+||+++.++...+. +...+++|+|+|+
T Consensus 318 -------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g 384 (570)
T PRK04319 318 -------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG 384 (570)
T ss_pred -------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCC
Confidence 00001489999999999999999999999999999999999998765544332 3467899999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcceEEEec--CcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 472 ~ev~ivd~~~~~~~~~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
++++|+| +++..++.|+ .|||+++| ++++.|||++++.|++.| .+|||+|||+|++++||+++++||+||+||
T Consensus 385 ~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~ 459 (570)
T PRK04319 385 IEAAIVD-DQGNELPPNR---MGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIK 459 (570)
T ss_pred CEEEEEC-CCCCCCCCCC---ceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEEecCCCEEE
Confidence 9999999 4555556665 89999997 899999999999999999 489999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
+ +|++|+|.+||+++.+||.|.+++|+|.+++ +.++|+|++.+ +++.++++++
T Consensus 460 ~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~ 524 (570)
T PRK04319 460 T-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKG 524 (570)
T ss_pred E-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 6 8999999999999999999999999997754 57888888643 3577777764
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-64 Score=559.16 Aligned_cols=463 Identities=18% Similarity=0.240 Sum_probs=365.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|++.++++|+++|+.+....++..+.++++||+||.++++++|++|.+. +++||+|+|+++|+++|++++
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~ 96 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF 96 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence 3457899999999999999999987410011123356899999999999999999987 899999999999999999999
Q ss_pred HHHHhcCCeEEecC-CCCC--HHHHHHHHHhccceEEEEcccchHHHHhhhccCCC--ceEEEEECCCCCCCCCCCcCCC
Q 007169 156 HACSAYSFISVPLY-DTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTG 230 (615)
Q Consensus 156 lA~~~~G~v~vpl~-~~~~--~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~ 230 (615)
|||+++|++++|++ +..+ .+++.+++++++++++|++.+..+.+.+.....+. ...++.++....
T Consensus 97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (631)
T PRK07769 97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD---------- 166 (631)
T ss_pred HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc----------
Confidence 99999999999994 4443 68899999999999999998766655443332221 122333322110
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHH
Q 007169 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (615)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 310 (615)
.. . . ........++++++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+
T Consensus 167 --------~~--~-~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~ 234 (631)
T PRK07769 167 --------EV--G-A-TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM 234 (631)
T ss_pred --------cc--c-c-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence 00 0 0 0111234678999999999999999999999999998887777777888999999999999999
Q ss_pred HHHHHHHHHHhCcEEEEec---C--ChHHHHHHHHhhCC---eEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH
Q 007169 311 ERANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRP---TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382 (615)
Q Consensus 311 ~~~~~~~~l~~G~~i~~~~---~--~~~~l~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 382 (615)
++...+.+++.|+++++++ + ++..+++.++++++ +++..+|.++..+..... ...
T Consensus 235 gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~~--------------- 297 (631)
T PRK07769 235 GLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LPK--------------- 297 (631)
T ss_pred hhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cch---------------
Confidence 9988777888899998874 2 88899999999886 789999998876654100 000
Q ss_pred HHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---CC---ccccccccccccccccccC
Q 007169 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQLD 456 (615)
Q Consensus 383 ~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~---g~---~v~~~YG~TE~~~~~~~~~ 456 (615)
.+. . ....+++|.+++||+++++++.++|.+.| |+ .++++||+||++..++...
T Consensus 298 ------~~~---~-----------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 357 (631)
T PRK07769 298 ------DGE---P-----------PLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTP 357 (631)
T ss_pred ------hcc---c-----------CcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccC
Confidence 000 0 00114899999999999999999999887 33 5999999999876555432
Q ss_pred CCC---------------------------CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccC
Q 007169 457 EGD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (615)
Q Consensus 457 ~~~---------------------------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~ 509 (615)
... ...+++|+|.++++++|+|.+++..++.|+ .|||||+|++++.|||+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge---~GEl~v~gp~v~~GY~~ 434 (631)
T PRK07769 358 MDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ---IGEIWLHGNNIGTGYWG 434 (631)
T ss_pred CCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC---EEEEEecCCCccccccC
Confidence 211 012479999999999999977777888887 89999999999999999
Q ss_pred ChhhhhhccC-----------------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhc-CCCc
Q 007169 510 DEIQTKEVID-----------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKFV 571 (615)
Q Consensus 510 ~~~~t~~~~~-----------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~-~p~V 571 (615)
+++.|++.|. .+|||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.|||+++.+ ||.|
T Consensus 435 ~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~~p~v 512 (631)
T PRK07769 435 KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVII-DGRNHYPQDLEYTAQEATKAL 512 (631)
T ss_pred ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEE-CCeeeCHHHHHHHHHhccccc
Confidence 9999999884 25899999999996 9999999999999997 8999999999999986 8999
Q ss_pred ce--EEEEeeCC----------------------CCeEEEEEEeC-------HHHHHHHHHHc
Q 007169 572 GQ--CFVYGDSF----------------------NSALVAIVSVD-------QDALKAWAASE 603 (615)
Q Consensus 572 ~~--~~V~g~~~----------------------~~~~va~vv~~-------~~~l~~~~~~~ 603 (615)
.+ ++|+|.++ .+.++|+|++. .+++.++++++
T Consensus 513 ~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~~ 575 (631)
T PRK07769 513 RTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRAA 575 (631)
T ss_pred cCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHHH
Confidence 98 89998776 24688888753 35677787764
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-64 Score=551.77 Aligned_cols=457 Identities=25% Similarity=0.303 Sum_probs=368.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 81 l~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
+..+|.+ +++|+++|+++. ++. ..+||+||.++++++|++|.+ .|+++||+|+|+++|+++|+++++||+
T Consensus 43 ~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~ 113 (560)
T PLN02574 43 VSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVL 113 (560)
T ss_pred HHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHH
Confidence 3444444 679999998753 221 248999999999999999999 999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 007169 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (615)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
++|++++|++|.++.+++.+++++++++++|++.+..+.+... ... ++.++...... ........|.++
T Consensus 114 ~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~-----~~~~~~~~~~~~ 182 (560)
T PLN02574 114 SLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL-----GVP-VIGVPENYDFD-----SKRIEFPKFYEL 182 (560)
T ss_pred HhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc-----CCc-EEecCcccccc-----cCccCcccHHHH
Confidence 9999999999999999999999999999999998766555432 111 22222110000 001122345665
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc----Ccc-cCCCcEEEEcCChHHHHHHHH
Q 007169 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTK-FYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~-~~~~d~~l~~lPl~h~~~~~~ 314 (615)
...... ..+.....++++++|+|||||||.||||++||+++++.+..... ... ...++++++.+|++|.+++..
T Consensus 183 ~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 261 (560)
T PLN02574 183 IKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSL 261 (560)
T ss_pred hhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHH
Confidence 543322 11223346789999999999999999999999999887765432 122 235789999999999999876
Q ss_pred H-HHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 315 Q-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 315 ~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
. +.++..|+++++.+ +++..+++.++++++|+++++|+++..+.+....
T Consensus 262 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------- 312 (560)
T PLN02574 262 FVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG----------------------------- 312 (560)
T ss_pred HHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-----------------------------
Confidence 4 45678899998887 7999999999999999999999999988763110
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC--CCCCCCCcCCCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE--GDNLSGHVGSPN 469 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~ 469 (615)
......+++|.+++||+++++++.+.+.+.+ ++++++.||+||++.+.+.... .....+++|.|.
T Consensus 313 ------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~ 380 (560)
T PLN02574 313 ------------VCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLA 380 (560)
T ss_pred ------------cccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeC
Confidence 0000114899999999999999999998888 6899999999999865543222 224568999999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
++++++|+|++++..++.|+ .|||||+|++++.|||++++.|++.|+.+|||+|||+|++|+||+++|+||+||+||
T Consensus 381 ~~~~v~i~d~~~g~~~~~g~---~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~ 457 (560)
T PLN02574 381 PNMQAKVVDWSTGCLLPPGN---CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIK 457 (560)
T ss_pred CCcEEEEEeCCCCcCCCCCC---CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheE
Confidence 99999999987888888887 899999999999999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+ +|++|+|.+||++|.+||+|.|++|+|.++. +.++++|+++ .+++.++++++
T Consensus 458 ~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~ 519 (560)
T PLN02574 458 Y-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQ 519 (560)
T ss_pred E-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 7 8999999999999999999999999997654 4688999864 46788888765
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=547.72 Aligned_cols=470 Identities=24% Similarity=0.356 Sum_probs=377.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...|+.++|++.++++|+++|++.. + +.+||+||.+++.++|++|.+ .|+++||+|+|+++|+++|++++
T Consensus 22 ~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~ 92 (562)
T PRK05677 22 EYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV 92 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 4468999999999999999999753 2 359999999999999999997 59999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCC--CCC---------
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ--IPS--------- 224 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~--~~~--------- 224 (615)
|||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .++.++..+..+.. ...
T Consensus 93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK05677 93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKH 171 (562)
T ss_pred HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhh
Confidence 999999999999999999999999999999999999877665554443222 34444443211100 000
Q ss_pred ---C-CcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCc--ccC-CC
Q 007169 225 ---L-PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFY-PS 297 (615)
Q Consensus 225 ---~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~--~~~-~~ 297 (615)
. ..........+.+.+..............++++++|+|||||||.||||+++|++++..+......+ .+. ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK05677 172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC 251 (562)
T ss_pred ccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCc
Confidence 0 0000011234555554433222223345679999999999999999999999999987765544332 233 34
Q ss_pred cEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHH
Q 007169 298 DVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374 (615)
Q Consensus 298 d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 374 (615)
+++++.+|++|.+++.. .+..+..|++.++.+ .++..+++.++++++|+++++|+++..+.+...
T Consensus 252 ~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------ 319 (562)
T PRK05677 252 EILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA------------ 319 (562)
T ss_pred cEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc------------
Confidence 78899999999999865 445677888777665 588999999999999999999999988765200
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccc
Q 007169 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ 454 (615)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~ 454 (615)
.+.....++|.+++||+++++++.+.+++.+++++++.||+||++++++.
T Consensus 320 ------------------------------~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 369 (562)
T PRK05677 320 ------------------------------FRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSV 369 (562)
T ss_pred ------------------------------cccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceee
Confidence 00000148999999999999999999999899999999999999876665
Q ss_pred cCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec
Q 007169 455 LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (615)
Q Consensus 455 ~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (615)
........+++|.|+++++++|+| +++..++.|+ .|||+|+|+.++.||+++|+.|++.|+.+|||+|||+|++|+
T Consensus 370 ~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~ 445 (562)
T PRK05677 370 NPSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGE---VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE 445 (562)
T ss_pred cCccCCCCCccCccCCCCEEEEEC-CCCCCCCCCC---CeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC
Confidence 544445678899999999999999 5577788887 899999999999999999999999998899999999999999
Q ss_pred CCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
+|.++|.||+||+||+ +|++|+|.+||+++.++|+|.+++|+|.+++ +.++++|++ +++++.++++++
T Consensus 446 ~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 522 (562)
T PRK05677 446 DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRAN 522 (562)
T ss_pred CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 9999999999999997 7999999999999999999999999997764 467788874 346788888764
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=551.26 Aligned_cols=447 Identities=22% Similarity=0.315 Sum_probs=356.8
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCc----cCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGT----VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~----~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.|+.++|.+.++++|+++|+.+. ++. ...++++||+||.+++.++|++|.+.|+++||+|+++++|+++|+++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~ 82 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL 82 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence 57889999999999999999874 321 11244799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEccc--chHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCce
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~--~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (615)
++||+++|++++|+++.++.+++.+++++++++++|++.. ....+... ..+..+.++.++... ...
T Consensus 83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~----------~~~ 150 (552)
T PRK09274 83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL----------LWG 150 (552)
T ss_pred HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc----------ccC
Confidence 9999999999999999999999999999999999998752 11222111 112233344333210 001
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (615)
...++++...............++++++|+|||||||.||||++||+++.+.+......+++.++|+.++.+|++|.+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 230 (552)
T PRK09274 151 GTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP 230 (552)
T ss_pred CccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh
Confidence 12345544222111122234567899999999999999999999999999988877777888999999999999987643
Q ss_pred HHHHHHHHhCcEEEEec--------CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 313 ANQVMTVYSGVAVGFYQ--------GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 313 ~~~~~~l~~G~~i~~~~--------~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
..|+++++.. .++..+++.|+++++|+++++|+++..+.+.....
T Consensus 231 -------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------- 283 (552)
T PRK09274 231 -------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-------------------- 283 (552)
T ss_pred -------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc--------------------
Confidence 4577776643 47899999999999999999999999987632110
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccccccccccCCC----
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEG---- 458 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~---- 458 (615)
....+++|.+++||+++++++.+++++.| |+++++.||+||++++++.....
T Consensus 284 ----------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 341 (552)
T PRK09274 284 ----------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFA 341 (552)
T ss_pred ----------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhcc
Confidence 00115899999999999999999999998 56999999999998765433211
Q ss_pred ------CCCCCCcCCCCCCeeEEEeecC--------CCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc--CCCC
Q 007169 459 ------DNLSGHVGSPNAACEIKLVDVP--------EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI--DEDG 522 (615)
Q Consensus 459 ------~~~~~~vG~p~~~~ev~ivd~~--------~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~--~~~g 522 (615)
.....++|+|+++++++|+|+. ++..++.|+ .|||+|+|++++.|||++|+.|.+.| +.+|
T Consensus 342 ~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g 418 (552)
T PRK09274 342 TRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE---IGEIVVAGPMVTRSYYNRPEATRLAKIPDGQG 418 (552)
T ss_pred ccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCC---eeEEEEecCcccccccCChHHhhhhhcccCCC
Confidence 1123479999999999999953 334556665 89999999999999999999998876 4467
Q ss_pred --eeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeCH
Q 007169 523 --WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVDQ 593 (615)
Q Consensus 523 --w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~ 593 (615)
||+|||+|++|+||+|+++||+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++++|++++
T Consensus 419 ~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~ 492 (552)
T PRK09274 419 DVWHRMGDLGYLDAQGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEP 492 (552)
T ss_pred CcEEEcCCEEEEccCCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccC
Confidence 9999999999999999999999999996 8999999999999999999999999997654 46888888643
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-63 Score=541.56 Aligned_cols=462 Identities=27% Similarity=0.363 Sum_probs=384.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
++..|+.+++.++++++|+++|+.+. +. .+++||.||.++++++|++|.+.|+++||+|+++++|+++|++++
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~----~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~ 92 (537)
T PLN02246 20 PNHLPLHDYCFERLSEFSDRPCLIDG---AT----GRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF 92 (537)
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEec---CC----CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 45678999999999999999999753 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|++++|+++.++.+++..+++.++++++|++....+.+...... +.+ .++.++... .....
T Consensus 93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~-----------~~~~~ 159 (537)
T PLN02246 93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP-----------EGCLH 159 (537)
T ss_pred HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC-----------CCcee
Confidence 99999999999999999999999999999999999998877766554321 222 344444321 11244
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc----CcccCCCcEEEEcCChHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~~ 311 (615)
+.++...... ..+.....++++++++|||||||.||||+++|++++..+..... .+.+.++|++++.+|++|.++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~ 238 (537)
T PLN02246 160 FSELTQADEN-ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS 238 (537)
T ss_pred HHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence 5555433211 12233456889999999999999999999999999887665432 467889999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
+.. .+.++..|+++++.+ .++..+++.++++++|++.++|+++..|.+....
T Consensus 239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------- 292 (537)
T PLN02246 239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV-------------------------- 292 (537)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc--------------------------
Confidence 865 456799999999988 7899999999999999999999999887652100
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccC-----CCCCCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD-----EGDNLSG 463 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~-----~~~~~~~ 463 (615)
.....+++|.+++||+++++++.+++++.+ ++.+++.||+||++.+++... ......+
T Consensus 293 ----------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 356 (537)
T PLN02246 293 ----------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSG 356 (537)
T ss_pred ----------------cccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCC
Confidence 000014899999999999999999999988 678999999999986544321 1224567
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|+|+++++++|+|++++..++.|. .|||+++|+.++.|||++++.|++.|+.+|||+|||+|+++++|++++.||
T Consensus 357 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR 433 (537)
T PLN02246 357 SCGTVVRNAELKIVDPETGASLPRNQ---PGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDR 433 (537)
T ss_pred ccccccCCcEEEEecCCCCCcCCCCC---ceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEec
Confidence 89999999999999977778888886 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcC
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEG 604 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~ 604 (615)
.||+||+ +|++|+|.+||+++.++|+|.+++|++.+++ +.++++|+++ +++++++++++.
T Consensus 434 ~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l 502 (537)
T PLN02246 434 LKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQV 502 (537)
T ss_pred ccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 9999997 8999999999999999999999999997654 4788888864 467888887653
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=542.65 Aligned_cols=452 Identities=22% Similarity=0.266 Sum_probs=374.8
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|.+.++++||++|+... + +.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999753 2 25999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++.+++.+++++++++++|++......+.......+....++.+++.. ....+++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 181 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED------------HDLTVEV 181 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc------------ccccHHH
Confidence 9999999999999999999999999999999999877666655443344444444433211 0124455
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (615)
+...... ......+++.++++|||||||.||||+++|++++.........+.+..++++++.+|++|.+++...+.+
T Consensus 182 ~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 258 (537)
T PRK13382 182 LIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLA 258 (537)
T ss_pred HhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHH
Confidence 5433211 1112346789999999999999999999999988877776666778889999999999999998777888
Q ss_pred HHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007169 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (615)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (615)
+..|+++++.. +++..+++.|+++++|++.++|+++..+++......
T Consensus 259 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------- 306 (537)
T PRK13382 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR-------------------------------- 306 (537)
T ss_pred HhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------------
Confidence 99999998876 789999999999999999999999998865210000
Q ss_pred hHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCeeEEE
Q 007169 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKL 476 (615)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~i 476 (615)
....+.++|.+++||+++++++.+.|.+.++.++++.||+||++.+++..... ....+++|+|+++++++|
T Consensus 307 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i 378 (537)
T PRK13382 307 --------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRI 378 (537)
T ss_pred --------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEE
Confidence 00011479999999999999999999999999999999999998765543221 245679999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 007169 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (615)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (615)
+| ++++.++.|. .|||+++|++++.||+ ++.+.. + .+|||+|||++++|+||+++|.||+||+||+ +|++|
T Consensus 379 ~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~-~G~~v 449 (537)
T PRK13382 379 LD-QDFREVPTGE---VGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVS-GGENV 449 (537)
T ss_pred EC-CCCCCCCCCC---eeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEE-CCEEE
Confidence 99 5667777776 8999999999999998 555554 4 4799999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHc
Q 007169 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~ 603 (615)
+|.+||+++.++|+|.+++|+|.++. +.++|+|++++ ++++++++++
T Consensus 450 ~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~ 505 (537)
T PRK13382 450 YPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDN 505 (537)
T ss_pred CHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999998754 46899998643 6788888864
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=538.59 Aligned_cols=462 Identities=22% Similarity=0.303 Sum_probs=379.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|.+.++.+|+++|+... +...+..+.+||+||++++.++|.+|.+.|+++||+|+++++|+++|+++++||
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 58999999999999999999763 211123457999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+++|++++|+++.++.+++.++++++++++++++.... ..+......++..+.++..+... .
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence 99999999999999999999999999999999987542 22223333445556666665321 0
Q ss_pred eeHHHHHhcCccCC-------CCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCCh
Q 007169 234 LTYSNLLSQGRSNL-------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (615)
Q Consensus 234 ~~~~~l~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl 306 (615)
..+++++....... .......++++++|+|||||||.||||+++|+++...+......+++..+|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 245 (538)
T TIGR03208 166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPM 245 (538)
T ss_pred cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCc
Confidence 12333332111000 01123467899999999999999999999999999988877777788899999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
+|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 246 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------------- 305 (538)
T TIGR03208 246 AHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKES-------------------- 305 (538)
T ss_pred hhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhcc--------------------
Confidence 99998765 556899999998876 78999999999999999999999998876521100
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--CCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLS 462 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~ 462 (615)
+ ...+++|.+++||+++++++.+++.+.+|+++++.||+||++++.+...... ...
T Consensus 306 -----~-----------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 363 (538)
T TIGR03208 306 -----G-----------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKAS 363 (538)
T ss_pred -----C-----------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhcc
Confidence 0 0014899999999999999999999889999999999999987665443221 234
Q ss_pred CCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 007169 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 463 ~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
.++|+|+++++++|+| +++..++.|. .|||+++|+.++.||+++|+.|. ++.+|||+|||+|++|++|+|+++|
T Consensus 364 ~~~G~~~~g~~v~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~g 437 (538)
T TIGR03208 364 TTDGRPLPGVEVKVID-ANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRING 437 (538)
T ss_pred CcccccCCCCEEEEEC-CCCCCCcCCC---CcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEe
Confidence 6799999999999999 5566677776 89999999999999999998875 3578999999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCC
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGI 605 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~~ 605 (615)
|.||+||+ +|++|+|.+||+++.+||+|.+++|+|.+++ +.++|+|++. .+++.++++++.+
T Consensus 438 R~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l 508 (538)
T TIGR03208 438 RSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKV 508 (538)
T ss_pred ccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcch
Confidence 99999995 8999999999999999999999999998754 5788999874 4678888876443
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=550.55 Aligned_cols=465 Identities=16% Similarity=0.183 Sum_probs=368.5
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..+..+++|+++++.+|+++|+++. +...+..+.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++
T Consensus 51 ~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 127 (629)
T PRK10524 51 RTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAML 127 (629)
T ss_pred EeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4455688898888899999999875 3222345679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---------hHHHHhhhccC-CCceEEEEECCCCCCCCCCC
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEV-PTVRLIVVIGGIDDQIPSLP 226 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~l~~ii~~~~~~~~~~~~~ 226 (615)
||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.++.... +....++.++.......
T Consensus 128 A~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 204 (629)
T PRK10524 128 ACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMA--- 204 (629)
T ss_pred HHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC---
Confidence 999999999999999999999999999999999997642 23333333222 23455666553211100
Q ss_pred cCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHH-hhccCcccCCCcEEEEcCC
Q 007169 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISYLP 305 (615)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~-~~~~~~~~~~~d~~l~~lP 305 (615)
........|.++.........+.....++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|
T Consensus 205 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 283 (629)
T PRK10524 205 -RVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASD 283 (629)
T ss_pred -cccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 00111235666654322211222334678999999999999999999999999765443 3334467889999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHH
Q 007169 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (615)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (615)
+.|..+... .+.+++.|+++++++ .++..+++.++++++|++.++|++++.+.+.....
T Consensus 284 ~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------- 348 (629)
T PRK10524 284 IGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL--------------- 348 (629)
T ss_pred CCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc---------------
Confidence 999888654 567899999999876 36889999999999999999999998775420000
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-
Q 007169 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG- 458 (615)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~- 458 (615)
.++...++||.+++||+++++++.+++++.+++++++.||+||++..+....+.
T Consensus 349 -------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~ 403 (629)
T PRK10524 349 -------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGV 403 (629)
T ss_pred -------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCc
Confidence 000011489999999999999999999999999999999999998433322221
Q ss_pred ---CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecC---cccccccCChhhhhhcc---CCCCeeecccE
Q 007169 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGDI 529 (615)
Q Consensus 459 ---~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~---~v~~GY~~~~~~t~~~~---~~~gw~~TGDl 529 (615)
....+++|.|+++++++|+|.+++..++.|. .|||+++|| +++.|||++++.+.+.+ ..+|||+|||+
T Consensus 404 ~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~---~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl 480 (629)
T PRK10524 404 EDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE---KGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDW 480 (629)
T ss_pred ccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC---cEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCc
Confidence 2356899999999999999964777777776 899999998 58899999998877653 14689999999
Q ss_pred EEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
|++|+||+++|+||.||+||+ +|++|+|.+||++|.+||+|.+++|+|.+++ +.++++|++.
T Consensus 481 ~~~d~dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~ 545 (629)
T PRK10524 481 GIRDADGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPK 545 (629)
T ss_pred EEEcCCCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEEC
Confidence 999999999999999999997 7999999999999999999999999998765 5789999875
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=548.58 Aligned_cols=469 Identities=19% Similarity=0.205 Sum_probs=362.3
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.|+.+.+.+ ++++++|+++. +. .+..+.+||+||.+++.++|++|.++|+++||+|+|+++|++|+++++|||
T Consensus 87 ~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~ 159 (652)
T TIGR01217 87 LNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT 159 (652)
T ss_pred eeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 455555543 35789999875 32 234567999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---------hHHHHhhhccCCCceEEEEECCCCCCCCCCCcCC
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (615)
+++|++++|+++.++++++.+++++++++++|+++.. .+.+.++...++.++.++.++...........
T Consensus 160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 237 (652)
T TIGR01217 160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPK-- 237 (652)
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccccc--
Confidence 9999999999999999999999999999999998653 34555555566777777776532211000000
Q ss_pred CceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHH-HHHhhccCcccCCCcEEEEcCChHH
Q 007169 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAGATLGTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~-~~~~~~~~~~~~~~d~~l~~lPl~h 308 (615)
......|+++...............++++++|+|||||||.||||+++|++++. ........+++.++|++++++|+.|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 317 (652)
T TIGR01217 238 IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW 317 (652)
T ss_pred ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcch
Confidence 012346777765422211222345678999999999999999999999999654 3444444578899999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 007169 309 IYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (615)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (615)
+... ..+.+++.|++++++. .++..+++.++++++|++..+|.++..+...
T Consensus 318 ~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------------------- 373 (652)
T TIGR01217 318 MMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA----------------------- 373 (652)
T ss_pred hhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-----------------------
Confidence 8642 3457899999999985 2678999999999999998877776554321
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC--ccccccccccccccccccCC-CCC
Q 007169 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG--RVTEGYGMTETSCLISQLDE-GDN 460 (615)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~--~v~~~YG~TE~~~~~~~~~~-~~~ 460 (615)
+..+...+ ..++||.+++||+++++++.+++.+.++. .+.+.||+||+++......+ ...
T Consensus 374 ------~~~~~~~~-----------~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 436 (652)
T TIGR01217 374 ------GVHPARTH-----------DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPV 436 (652)
T ss_pred ------CCCccccC-----------ChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCC
Confidence 00000000 11589999999999999999999988864 56789999997543332222 224
Q ss_pred CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecC--cccccccCChhhhh---hccC-CCCeeecccEEEEec
Q 007169 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK---EVID-EDGWFHTGDIGMWIP 534 (615)
Q Consensus 461 ~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~--~v~~GY~~~~~~t~---~~~~-~~gw~~TGDlg~~~~ 534 (615)
..+++|.|.+|++++|+| ++++.+ .|+ .|||+++|+ +++.|||+||+.|+ ..|. .+|||+|||+|++|+
T Consensus 437 ~~g~~g~p~~g~~v~ivd-~~g~~~-~g~---~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~ 511 (652)
T TIGR01217 437 HIGEIQAPGLGTAVQSWD-PEGKPV-TGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP 511 (652)
T ss_pred cCCccCCCcCCCceEEEC-CCCCCC-CCC---ccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC
Confidence 568899999999999999 455555 354 899999996 68999999998765 2232 268999999999999
Q ss_pred CCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHH
Q 007169 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAAS 602 (615)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~ 602 (615)
||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++++ +++++++++
T Consensus 512 dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~ 590 (652)
T TIGR01217 512 RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRA 590 (652)
T ss_pred CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999995 9999999999999999999999999998764 58999999753 367777765
Q ss_pred c
Q 007169 603 E 603 (615)
Q Consensus 603 ~ 603 (615)
+
T Consensus 591 ~ 591 (652)
T TIGR01217 591 G 591 (652)
T ss_pred h
Confidence 3
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-63 Score=549.03 Aligned_cols=461 Identities=18% Similarity=0.230 Sum_probs=358.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
++..|+.++|.++++++|+++|+.+....+...+..+.+||+||.++++++|++|.+. +++||+|+|+++|+++|++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~ 109 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGF 109 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHH
Confidence 4567899999999999999999987510010113356799999999999999999987 999999999999999999999
Q ss_pred HHHHhcCCeEEec-CCCCC--HHHHHHHHHhccceEEEEcccchHHHHhhhccCCC--ceEEEEECCCCCCCCCCCcCCC
Q 007169 156 HACSAYSFISVPL-YDTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTG 230 (615)
Q Consensus 156 lA~~~~G~v~vpl-~~~~~--~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~ 230 (615)
+||+++|++++|+ ++.++ .+++.+++++++++++|++....+.+.+....++. ...++.++...+
T Consensus 110 lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------- 179 (612)
T PRK12476 110 FAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD---------- 179 (612)
T ss_pred HHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc----------
Confidence 9999999999999 56666 78999999999999999998776655544333332 123444432110
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcc-cCCCcEEEEcCChHHH
Q 007169 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHI 309 (615)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~d~~l~~lPl~h~ 309 (615)
.... ........++++++|+|||||||.||||++||+++++.+......+. +.+++++++++|++|.
T Consensus 180 -----------~~~~-~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~ 247 (612)
T PRK12476 180 -----------SAGE-SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHD 247 (612)
T ss_pred -----------cccc-cccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccc
Confidence 0000 11112346789999999999999999999999999887766555566 7889999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEec-----CChHHHHHHHH--hhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHH
Q 007169 310 YERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382 (615)
Q Consensus 310 ~~~~~~~~~l~~G~~i~~~~-----~~~~~l~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 382 (615)
+++...+.+++.|++++++. .++..+++.++ ++++|+++.+|.++..+..... ...
T Consensus 248 ~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~--~~~--------------- 310 (612)
T PRK12476 248 MGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRG--LPA--------------- 310 (612)
T ss_pred cchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhc--Chh---------------
Confidence 99887666656666666554 27889999995 5899999999999887765200 000
Q ss_pred HHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---CC---ccccccccccccccccccC
Q 007169 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQLD 456 (615)
Q Consensus 383 ~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~---g~---~v~~~YG~TE~~~~~~~~~ 456 (615)
.. ..++ .+++| +++||+++++++.+.+++.| |+ .+++.||+||++..++...
T Consensus 311 ------~~----~~~~-----------l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~ 368 (612)
T PRK12476 311 ------EG----DDID-----------LSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIA 368 (612)
T ss_pred ------hh----cCcc-----------hhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccC
Confidence 00 0000 14789 99999999999999999887 44 4899999999876544322
Q ss_pred CCC---------------------------CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccC
Q 007169 457 EGD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (615)
Q Consensus 457 ~~~---------------------------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~ 509 (615)
+.. ...+++|+|+++++++|+|.++++.++.|+ .||||++|++++.|||+
T Consensus 369 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~~ 445 (612)
T PRK12476 369 PDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE---VGEIWLHGDNIGRGYWG 445 (612)
T ss_pred CCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC---EEEEEEcCCcccccccC
Confidence 111 123589999999999999955477888776 89999999999999999
Q ss_pred ChhhhhhccC------------------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhc-CCC
Q 007169 510 DEIQTKEVID------------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKF 570 (615)
Q Consensus 510 ~~~~t~~~~~------------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~-~p~ 570 (615)
+|+.|++.|. .++||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.+||+++.+ ||.
T Consensus 446 ~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR~~d~I~~-~G~~I~p~eIE~~l~~~~p~ 523 (612)
T PRK12476 446 RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVI-DGRNHYPQDIEATVAEASPM 523 (612)
T ss_pred ChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEeccCcEEEE-CCcccCHHHHHHHHHHhccc
Confidence 9999999884 13599999999985 9999999999999997 8999999999999985 899
Q ss_pred cce--EEEEeeCCC--CeEEEEEEeC-------HHHHHHHHHHc
Q 007169 571 VGQ--CFVYGDSFN--SALVAIVSVD-------QDALKAWAASE 603 (615)
Q Consensus 571 V~~--~~V~g~~~~--~~~va~vv~~-------~~~l~~~~~~~ 603 (615)
|.+ ++|++.+++ +.++++|++. .+++.++++++
T Consensus 524 V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~ 567 (612)
T PRK12476 524 VRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAA 567 (612)
T ss_pred ccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHH
Confidence 999 777886654 5788888853 34555555543
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=548.04 Aligned_cols=469 Identities=18% Similarity=0.205 Sum_probs=367.7
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.|+.+.+.++ .+|+++|+++. +. .+..+.+||+||.+++.++|++|.+.|+++||+|+|+++|++++++++|||
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~ 159 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT 159 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3555555442 58999999875 32 244678999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---------hHHHHhhhccCCCceEEEEECCCCCCCCCCCcCC
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (615)
+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.+....++.++.++.++...... ....
T Consensus 160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~ 236 (655)
T PRK03584 160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAA---AAAA 236 (655)
T ss_pred HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcc---cccc
Confidence 9999999999999999999999999999999997643 234444444566666677665422100 0001
Q ss_pred CceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHH-HHhhccCcccCCCcEEEEcCChHH
Q 007169 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~-~~~~~~~~~~~~~d~~l~~lPl~h 308 (615)
......|+++...............++++++|+|||||||.||||++||++++.. +......+.+.++|+++++.++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 316 (655)
T PRK03584 237 LPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGW 316 (655)
T ss_pred cCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchH
Confidence 1123567777653222222233456799999999999999999999999987643 444455578889999999999998
Q ss_pred HHHHHHHHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 007169 309 IYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (615)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (615)
+... ..+.+++.|+++++++ .++..+++.++++++|++..+|+++..+.+...
T Consensus 317 ~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------------- 374 (655)
T PRK03584 317 MMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL--------------------- 374 (655)
T ss_pred HhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------------
Confidence 7543 3557899999999975 478999999999999999999999987754100
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccccccccccCC-CCC
Q 007169 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDE-GDN 460 (615)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~-~~~ 460 (615)
.+...+ ..++||.+++||+++++++.+++.+.+ ++.+.+.||+||+++......+ ...
T Consensus 375 --------~~~~~~-----------~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 435 (655)
T PRK03584 375 --------VPGETH-----------DLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPV 435 (655)
T ss_pred --------CccccC-----------ChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCc
Confidence 000000 115899999999999999999999888 4789999999998654332222 234
Q ss_pred CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecC--cccccccCChhhhh--hc-cC-CCCeeecccEEEEec
Q 007169 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK--EV-ID-EDGWFHTGDIGMWIP 534 (615)
Q Consensus 461 ~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~--~v~~GY~~~~~~t~--~~-~~-~~gw~~TGDlg~~~~ 534 (615)
..+++|.|++|++++|+| +++..+ .|+ .|||+|+|+ +++.|||++++.++ +. |. .+|||+|||+|++|+
T Consensus 436 ~~g~~g~p~~g~~~~ivd-~~g~~~-~g~---~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~ 510 (655)
T PRK03584 436 YRGEIQCRGLGMAVEAWD-EDGRPV-VGE---VGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE 510 (655)
T ss_pred CCCccCCCcCCceeEEEC-CCCCCC-CCC---ceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC
Confidence 568899999999999999 555555 554 899999996 79999999998654 22 21 268999999999999
Q ss_pred CCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHH
Q 007169 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAAS 602 (615)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~ 602 (615)
||+|+|+||+||+||+ +|++|+|.|||+++.+||.|.+|+|+|.+++ +.++|+|++++ +++.+++++
T Consensus 511 dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~ 589 (655)
T PRK03584 511 HGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRT 589 (655)
T ss_pred CCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 9999999999999996 8999999999999999999999999998763 58999999753 356777776
Q ss_pred c
Q 007169 603 E 603 (615)
Q Consensus 603 ~ 603 (615)
+
T Consensus 590 ~ 590 (655)
T PRK03584 590 N 590 (655)
T ss_pred h
Confidence 4
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-62 Score=533.33 Aligned_cols=461 Identities=21% Similarity=0.260 Sum_probs=378.2
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++.++|+++++++|+++|+.+. + +.+||+||.++++++|..|.+.|+++|++|+++++|+++|+++++
T Consensus 21 ~~~~l~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 91 (527)
T TIGR02275 21 QDKPLTDILRDQAARYPDAIAIICG---N------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF 91 (527)
T ss_pred cCCcHHHHHHHHHHHCCCceEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 3468999999999999999999753 2 369999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchH-----HHHhhhccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-----SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
||+++|++++++++..+.+++.++++.+++++++++..... .........+.++.++....... .
T Consensus 92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~- 161 (527)
T TIGR02275 92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV---------E- 161 (527)
T ss_pred HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC---------c-
Confidence 99999999999999999999999999999999999865321 12222223445555555432100 0
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (615)
..+...+..... ..+.....++++++|+|||||||.||||++||+++...+......+.+.++|++++.+|++|.++
T Consensus 162 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~ 238 (527)
T TIGR02275 162 --AELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP 238 (527)
T ss_pred --chhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence 011111111111 11223456789999999999999999999999999988887777778889999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Q 007169 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (615)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (615)
+.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+.....
T Consensus 239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------ 294 (527)
T TIGR02275 239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS------------------------ 294 (527)
T ss_pred hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc------------------------
Confidence 864 566889999998866 78999999999999999999999998876531100
Q ss_pred cCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC-CCCCCCCCcCC
Q 007169 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGS 467 (615)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~ 467 (615)
.....++|.+++||+++++++.+++.+.+|+++++.||+||++....... ..+...+++|+
T Consensus 295 ------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 356 (527)
T TIGR02275 295 ------------------RYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGR 356 (527)
T ss_pred ------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCC
Confidence 00114899999999999999999999999999999999999754332211 12234578999
Q ss_pred CC-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 468 p~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
|+ ++.+++|+| ++++..+.|+ .|||+++|+.++.|||++++.|.+.|+.+|||+|||+|++++||++++.||.||
T Consensus 357 ~~~~~~~v~i~d-~~g~~~~~g~---~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d 432 (527)
T TIGR02275 357 PMSPDDEVRVVD-DHGNPVAPGE---TGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKD 432 (527)
T ss_pred CCCCCceEEEEC-CCCCCCCCCC---ceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccc
Confidence 99 589999999 5566777776 899999999999999999999999998999999999999999999999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCCC
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGIQ 606 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~~~ 606 (615)
+||+ +|++|+|.+||+++.+||+|.+++|+|.+++ +.++|+|+++ ..++.++++++.+.
T Consensus 433 ~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~ 499 (527)
T TIGR02275 433 QINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLA 499 (527)
T ss_pred eeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHHhCCCc
Confidence 9995 8999999999999999999999999998765 5788998864 46889999886554
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-62 Score=532.50 Aligned_cols=467 Identities=24% Similarity=0.305 Sum_probs=381.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..+|+.++|++.++++|+++|+.+. +.+ ++.+.+||.||.++++++|++|.++|+++||+|+|+++|+++|+++++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~~~-~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l 80 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFE---SSG-GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcc---cCC-CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999875 432 345679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhcc-CCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
||+++|++++|+++.++.+++.+++++++++.+|++....+.+.+.... ...++.++..+..... ...+.+
T Consensus 81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 152 (517)
T PRK08008 81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSS 152 (517)
T ss_pred HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccC
Confidence 9999999999999999999999999999999999998877766655433 2335556665542110 012244
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (615)
++++............+..++++++|+|||||||.||||++||++++...........+.+++++++.+|++|..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence 5555433222112223446789999999999999999999999999865443333345778999999999999877665
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.++..|+++++.+ .++..+++.++++++|++.++|.+++.+.......
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------- 283 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA----------------------------- 283 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-----------------------------
Confidence 456788999999887 78999999999999999999999998876420000
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCe
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAAC 472 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ 472 (615)
.....+++.+.++ .+++++....+.+.+++++++.||+||+++.++...+. ....+++|.|++++
T Consensus 284 -------------~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~ 349 (517)
T PRK08008 284 -------------NDRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY 349 (517)
T ss_pred -------------ccccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCc
Confidence 0001367777765 47889999988888999999999999998655543332 24567899999999
Q ss_pred eEEEeecCCCCCCCCCCCCCcceEEEec---CcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 473 EIKLVDVPEMNYTSEDQPCPRGEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 473 ev~ivd~~~~~~~~~~~~~~~GEi~vrg---~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
+++|+| ++++.++.|+ .|||+++| ++++.|||++++.|++.|+.+|||+|||+|++|+||++++.||.||+||
T Consensus 350 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~ 425 (517)
T PRK08008 350 EAEIRD-DHNRPLPAGE---IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK 425 (517)
T ss_pred EEEEEC-CCCCCCCCCC---cceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEE
Confidence 999999 5667777776 89999998 6899999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHc
Q 007169 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~ 603 (615)
+ +|++|+|.+||+++.++|.|.+++|+|.++. +.++++|++++ +++.+|++++
T Consensus 426 ~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 487 (517)
T PRK08008 426 R-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQN 487 (517)
T ss_pred e-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 6 8999999999999999999999999998754 47889998753 6788888875
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-62 Score=534.08 Aligned_cols=458 Identities=21% Similarity=0.276 Sum_probs=378.8
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|++.++++||++|+.+. + +.+||+||.+++.++|..|.+.|+++|++|+++++|+++|+++++
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~l 89 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFL 89 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 5578999999999999999999764 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++++++++++++.+....+.+.......++.++.++..... ...... ..
T Consensus 90 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~ 162 (542)
T PRK06155 90 GCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV----SVPAGW---ST 162 (542)
T ss_pred HHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcccc----cccccc---ch
Confidence 99999999999999999999999999999999999988777666554333345566666542210 000000 01
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
.++... ..........++++++|+|||||||.||||+++|+++..........+++.+++++++.+|++|.+++...+
T Consensus 163 ~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~ 240 (542)
T PRK06155 163 APLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF 240 (542)
T ss_pred hhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHH
Confidence 111111 111122334678999999999999999999999999988877666778889999999999999999998778
Q ss_pred HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+.....
T Consensus 241 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------- 289 (542)
T PRK06155 241 QALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE------------------------------- 289 (542)
T ss_pred HHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-------------------------------
Confidence 8999999999877 78999999999999999999999998776521000
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEE
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ 475 (615)
....+++|.++.|| +++++.+.+++.+++++++.||+||++.++.... .....+++|.|.++++++
T Consensus 290 -----------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~ 355 (542)
T PRK06155 290 -----------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEAR 355 (542)
T ss_pred -----------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEE
Confidence 00114788888666 5688889999889999999999999987665432 345678899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEecC---cccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 007169 476 LVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (615)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEi~vrg~---~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (615)
|+| +++..++.|. .|||+++|+ +++.||+++++.|.+.| .+|||+|||+|++++||+++|+||++|+||+ +
T Consensus 356 i~d-~~~~~~~~g~---~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~-~ 429 (542)
T PRK06155 356 VVD-EHDQELPDGE---PGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRR-R 429 (542)
T ss_pred EEC-CCCCCCCCCC---ceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEe-C
Confidence 999 5567777776 899999998 69999999999999998 7999999999999999999999999999995 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|++|+|++||+++.++|+|.+++|+|.+++ +.+.++++++ ..+++++|+++
T Consensus 430 G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 489 (542)
T PRK06155 430 GENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPR 489 (542)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999998764 5677888753 46788888764
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=557.19 Aligned_cols=456 Identities=23% Similarity=0.292 Sum_probs=360.7
Q ss_pred CCCCCHHHHHHHHHHhcCC-CceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+..|+.++|.+.++++|+ ++|+... .++++||+||.++++++|++|.+. +++||+|+|+++|++||+++
T Consensus 201 ~~~~t~~~~l~~~~~~~p~~~~a~~~~--------~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~ 271 (718)
T PRK08043 201 RPRETLYEALLSAQYRYGAGKPCIEDV--------NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAV 271 (718)
T ss_pred CCCCCHHHHHHHHHHHhCCCCcceEcC--------CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHH
Confidence 3557999999999999998 5777421 124699999999999999999987 59999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHH--hhhccCCCceEEEEECCCCCCCCCCCcCCCce
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL--SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~--~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (615)
+|||+++|++++|+++.++.+++.+++++++++++|++.+..+... .....++.++.+ .+++....
T Consensus 272 ~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~----------- 339 (718)
T PRK08043 272 IFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLKDD----------- 339 (718)
T ss_pred HHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhhhh-----------
Confidence 9999999999999999999999999999999999999876543211 111112222222 22221000
Q ss_pred EeeHHHH--H-hcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHH
Q 007169 233 ILTYSNL--L-SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (615)
Q Consensus 233 ~~~~~~l--~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (615)
..+.+. . ...........+..++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.
T Consensus 340 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~ 418 (718)
T PRK08043 340 -VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS 418 (718)
T ss_pred -cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhh
Confidence 011110 0 000000111123467899999999999999999999999999988777777788999999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 310 YERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 310 ~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
+++.. .+.+++.|+++++.+ .++..+.+.++++++|+++++|+++..+.+..
T Consensus 419 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~------------------------- 473 (718)
T PRK08043 419 FGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA------------------------- 473 (718)
T ss_pred hhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-------------------------
Confidence 99876 557899999999876 46778889999999999999999887654310
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcC
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (615)
. -+| .++||.+++||+++++++.+.+++.||++++++||+||+++.++...+.....+++|
T Consensus 474 --~------~~~-----------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG 534 (718)
T PRK08043 474 --N------PYD-----------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVG 534 (718)
T ss_pred --C------ccc-----------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCC
Confidence 0 000 148999999999999999999999999999999999999876665544445678999
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccC--Chhh-------hhhccCCCCeeecccEEEEecCCc
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK--DEIQ-------TKEVIDEDGWFHTGDIGMWIPGGR 537 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~--~~~~-------t~~~~~~~gw~~TGDlg~~~~dG~ 537 (615)
+|+|+++++|+|.+. .+. .|||+++|++++.|||+ +++. +.+.+..+|||+|||+|++|+||+
T Consensus 535 ~p~pg~~~~i~d~~~-----~~~---~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 606 (718)
T PRK08043 535 RILPGMDARLLSVPG-----IEQ---GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGF 606 (718)
T ss_pred CcCCCCeeEEecCCC-----CCC---ceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCc
Confidence 999999999998432 122 69999999999999998 4552 333334689999999999999999
Q ss_pred EEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEE---eCHHHHHHHHHHcCCC
Q 007169 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVS---VDQDALKAWAASEGIQ 606 (615)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv---~~~~~l~~~~~~~~~~ 606 (615)
++|+||+||+||+ +|++|+|.+||+++.+++.+.+++|++.+++ +.++++++ ++.+++.+||+++++.
T Consensus 607 l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~~~~l~~~~~~~~l~ 680 (718)
T PRK08043 607 VQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELTREKLQQYAREHGVP 680 (718)
T ss_pred EEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccCHHHHHHHHHhcCCC
Confidence 9999999999996 7999999999999999998888888887654 46777665 3567899999987654
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-62 Score=531.30 Aligned_cols=464 Identities=27% Similarity=0.404 Sum_probs=394.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
++.++.+.|++.++.+|+++|+.+. + +.+||+||++++.++|..|.+.|+++||+|+++++|+++++++++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l 73 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL 73 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4688999999999999999999764 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++++++++++++.............++.++.++......... ......+|
T Consensus 74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (513)
T PRK07656 74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP------HTEKMKTF 147 (513)
T ss_pred HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc------CccccccH
Confidence 999999999999999999999999999999999999887776666555566677776665432110 01123567
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-H
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-Q 315 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~ 315 (615)
+++...... ........++++++|+|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++.. .
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (513)
T PRK07656 148 TDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV 226 (513)
T ss_pred HHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHH
Confidence 777654332 12334457889999999999999999999999999988887777788999999999999999999876 5
Q ss_pred HHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 007169 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (615)
Q Consensus 316 ~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (615)
+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.+.....
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------ 276 (513)
T PRK07656 227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS------------------------------ 276 (513)
T ss_pred HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC------------------------------
Confidence 56899999998866 78999999999999999999999999887631100
Q ss_pred chhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCC-C--CCCCcCCCCC
Q 007169 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD-N--LSGHVGSPNA 470 (615)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~-~--~~~~vG~p~~ 470 (615)
....+++|.+++||+++++++.+.+++.+++ .+++.||+||++++.+...... . ..+++|.|++
T Consensus 277 ------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~ 344 (513)
T PRK07656 277 ------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIA 344 (513)
T ss_pred ------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCC
Confidence 0011489999999999999999999999998 8999999999987766554433 2 2678999999
Q ss_pred CeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEc
Q 007169 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550 (615)
Q Consensus 471 ~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl 550 (615)
+++++|+| +++..++.|. .|||+++|+.++.||+++++.+...+..+|||+|||+|+++++|.++++||.+|+||+
T Consensus 345 ~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~ 420 (513)
T PRK07656 345 GVENKIVN-ELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIV 420 (513)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEe
Confidence 99999999 5677777776 8999999999999999999999999977999999999999999999999999999997
Q ss_pred CCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+|++|+|.+||+++.++++|.+++|++.+++ +.++|+|+++ ++++.+|++++
T Consensus 421 -~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 481 (513)
T PRK07656 421 -GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREH 481 (513)
T ss_pred -CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 8999999999999999999999999997654 4678898875 46788888764
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-62 Score=537.60 Aligned_cols=471 Identities=23% Similarity=0.327 Sum_probs=384.3
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..|+.++|++.+..+|+++|+.+. +. +.+.+||+||.+++.++|++|.+ .|+++||+|+++++|+++|+++++
T Consensus 9 ~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~l 82 (576)
T PRK05620 9 PLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLF 82 (576)
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 358999999999999999998763 21 24679999999999999999986 799999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++.++.++.++................+.+|
T Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (576)
T PRK05620 83 AVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSY 162 (576)
T ss_pred HHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccH
Confidence 99999999999999999999999999999999999988877777776667777777766542211111111123345678
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhh--ccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
+++.+.... ..+.....++++++++|||||||.||||+++|+++....... ...+.+..+|++++.+|++|.+++..
T Consensus 163 ~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~ 241 (576)
T PRK05620 163 EALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGV 241 (576)
T ss_pred HHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHH
Confidence 888764322 222334567899999999999999999999999986654432 23467888999999999999999888
Q ss_pred HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.+.++..|+++++.+ .++..+++.++++++|+++++|+++..++.......
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------- 294 (576)
T PRK05620 242 PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP--------------------------- 294 (576)
T ss_pred HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------------
Confidence 888899999998875 689999999999999999999999988765311000
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--------CCCCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--------NLSGH 464 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--------~~~~~ 464 (615)
.+ ..++|.+++||+++++++.+.+++.+|+++++.||+||++..++...+.+ ....+
T Consensus 295 ----~~-----------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (576)
T PRK05620 295 ----PE-----------RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVS 359 (576)
T ss_pred ----cc-----------cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccc
Confidence 00 03799999999999999999999989999999999999987655433221 11347
Q ss_pred cCCCCCCeeEEEeecCCCCCCC--CCCCCCcceEEEecCcccccccCChhhh----------------hhccCCCCeeec
Q 007169 465 VGSPNAACEIKLVDVPEMNYTS--EDQPCPRGEICVRGPLIFKGYYKDEIQT----------------KEVIDEDGWFHT 526 (615)
Q Consensus 465 vG~p~~~~ev~ivd~~~~~~~~--~~~~~~~GEi~vrg~~v~~GY~~~~~~t----------------~~~~~~~gw~~T 526 (615)
+|++.++++++++|. +..++ .+. .|||+++|++++.|||++++.| .+.|..+|||+|
T Consensus 360 ~G~~~~~~~~~i~~~--g~~~~~~~~~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~T 434 (576)
T PRK05620 360 QGRFPASLEYRIVND--GQVMESTDRN---EGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRT 434 (576)
T ss_pred cCCcCCceeEEEecC--CccccCCCCC---ceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEec
Confidence 899999999999984 33332 233 7999999999999999999988 344556899999
Q ss_pred ccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC---------HH
Q 007169 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD---------QD 594 (615)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~---------~~ 594 (615)
||+|++++||.++++||+||+||. +|++|+|.+||++|.+||.|.+++|+|.++. +.++|+|++. .+
T Consensus 435 GD~~~~~~dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~ 513 (576)
T PRK05620 435 GDVGSVTRDGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAE 513 (576)
T ss_pred CceEEEcCCceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHH
Confidence 999999999999999999999995 8999999999999999999999999998764 4677887753 36
Q ss_pred HHHHHHHHc
Q 007169 595 ALKAWAASE 603 (615)
Q Consensus 595 ~l~~~~~~~ 603 (615)
+++++++++
T Consensus 514 ~l~~~l~~~ 522 (576)
T PRK05620 514 RLRDQLRDR 522 (576)
T ss_pred HHHHHHHhh
Confidence 788888763
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-62 Score=535.20 Aligned_cols=465 Identities=22% Similarity=0.294 Sum_probs=368.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+...++.++|.+.++++||+.|+.+. ++. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 84 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA 84 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence 456788999999999999999999864 322 4599999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
++||+++|++++|+++.++.+++.+++++++++++|++............ ......+.+...... ..+....
T Consensus 85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~ 156 (534)
T PRK05852 85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--RWWPLTVNVGGDSGP------SGGTLSV 156 (534)
T ss_pred HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--cccceeeeecccccc------ccccccc
Confidence 99999999999999999999999999999999999998653322111000 001111222111000 0000000
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
.+..... ............+++++|+|||||||.||||+++|+++...+......+.+..+|++++.+|++|.+++..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 234 (534)
T PRK05852 157 HLDAATE--PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA 234 (534)
T ss_pred ccccccC--CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence 1111100 00001111223567899999999999999999999999988887777778899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcC
Q 007169 315 -QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (615)
Q Consensus 315 -~~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (615)
.+.+++.|+++++.. .++..+++.++++++|+++++|.++..+.+......
T Consensus 235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------- 289 (534)
T PRK05852 235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP------------------------- 289 (534)
T ss_pred HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------------
Confidence 455788888888754 678899999999999999999999998876321100
Q ss_pred CCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-----C---CCC
Q 007169 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-----D---NLS 462 (615)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-----~---~~~ 462 (615)
......++|.+++||+++++++.+++++.|+++++++||+||++..++..... . ...
T Consensus 290 ---------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~ 354 (534)
T PRK05852 290 ---------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST 354 (534)
T ss_pred ---------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCccccc
Confidence 00011589999999999999999999999999999999999998765543221 1 123
Q ss_pred CCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 007169 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 463 ~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
+.+|. .++++++|+| ++++.++.|+ .|||+|+|+.+++|||++++.|++.| .+|||+|||+|++|+||++++.|
T Consensus 355 g~~g~-~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~g 428 (534)
T PRK05852 355 GLVGR-STGAQIRIVG-SDGLPLPAGA---VGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRG 428 (534)
T ss_pred ccCCC-CCCCeEEEEC-CCCCCCCCCC---ceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEe
Confidence 34444 6999999999 5567777776 89999999999999999999999999 68999999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
|++|+||. +|++|+|.+||+++.++|+|.+|+|+|.+++ +.++++|++ +.+++.++++++
T Consensus 429 R~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~ 497 (534)
T PRK05852 429 RIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRER 497 (534)
T ss_pred cchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 99999995 8999999999999999999999999998764 468888886 347788888864
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=535.27 Aligned_cols=470 Identities=24% Similarity=0.366 Sum_probs=372.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
..+++.++|.+.++++|+++|+... + +.+||.||.++++++|.+|.+. |+++||+|+++++|+++|++++
T Consensus 22 ~~~~~~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~ 92 (562)
T PRK12492 22 AYKSVVEVFERSCKKFADRPAFSNL---G------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAV 92 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEecC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 3468999999999999999998753 2 3599999999999999999985 9999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEEC--CCCCCCC----------
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIG--GIDDQIP---------- 223 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~--~~~~~~~---------- 223 (615)
+||+++|++++|+++.++.+++.++++++++++++++....+.+.....+. ....++... +......
T Consensus 93 la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 93 FGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhccccccchhccccccc
Confidence 999999999999999999999999999999999999876555444332221 112221111 0000000
Q ss_pred --C-CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcc-------
Q 007169 224 --S-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK------- 293 (615)
Q Consensus 224 --~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~------- 293 (615)
. ...........|+++...+........+...+++++|+|||||||.||||+++|+++...+......+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 0 000000122456666654332222233456789999999999999999999999999876654433221
Q ss_pred --cCC-CcEEEEcCChHHHHHHHHH-HHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhc
Q 007169 294 --FYP-SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (615)
Q Consensus 294 --~~~-~d~~l~~lPl~h~~~~~~~-~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 367 (615)
+.. ++++++.+|++|.+++... +..+..|++.++.. .++..+++.++++++|++.++|+++..+.....
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----- 326 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG----- 326 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence 223 3578999999999998754 45677888776654 588999999999999999999999988765200
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccc
Q 007169 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE 447 (615)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE 447 (615)
.......++|.+++||+++++++.+.+++.++++++++||+||
T Consensus 327 -------------------------------------~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE 369 (562)
T PRK12492 327 -------------------------------------FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTE 369 (562)
T ss_pred -------------------------------------cccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccc
Confidence 0000114899999999999999999999989999999999999
Q ss_pred ccccccccCCCC-CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeec
Q 007169 448 TSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (615)
Q Consensus 448 ~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~T 526 (615)
++++++...... ...+++|+|+++++++|+| +++..++.|. .|||+|+|+.++.|||++|+.|.+.|+.+|||+|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~T 445 (562)
T PRK12492 370 TSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLGE---RGELCIKGPQVMKGYWQQPEATAEALDAEGWFKT 445 (562)
T ss_pred cCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCCC---ceEEEEeCCccccccccCchhhhhcccCCCceec
Confidence 987665443322 3457899999999999999 5667777776 8999999999999999999999999987899999
Q ss_pred ccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHH
Q 007169 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKA 598 (615)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~ 598 (615)
||+|++|++|+++|.||+||+||+ +|++|+|.+||+++.+||.|.+++|+|.+++ +.++++++++ .+++.+
T Consensus 446 GD~g~~~~~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~ 524 (562)
T PRK12492 446 GDIAVIDPDGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKA 524 (562)
T ss_pred CcEEEECCCCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999997 7999999999999999999999999997654 4688888863 467888
Q ss_pred HHHHc
Q 007169 599 WAASE 603 (615)
Q Consensus 599 ~~~~~ 603 (615)
+++++
T Consensus 525 ~~~~~ 529 (562)
T PRK12492 525 YCKEN 529 (562)
T ss_pred HHHHh
Confidence 88765
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=536.72 Aligned_cols=463 Identities=22% Similarity=0.294 Sum_probs=361.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.|+.++|.+.++++|+++|+.+. + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999999764 2 25999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCC-----ceEEEEECCCCCCCCCCCcCCCceE
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT-----VRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~-----l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+++|++++|+++.++.+++.++|+.++++++|++.+..+.+.++...++. ...++.++....... .....
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 159 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-----PSSEE 159 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-----Ccccc
Confidence 99999999999999999999999999999999998777666554433221 112444443211100 01122
Q ss_pred eeHHHHHhcCccCCCC----CCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHH
Q 007169 234 LTYSNLLSQGRSNLQP----FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (615)
.+++++.......... .....++++++|+|||||||.||||+++|+++............+...+++++.+|++|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~ 239 (579)
T PLN03102 160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHC 239 (579)
T ss_pred cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhh
Confidence 4566665443221111 122457899999999999999999999999976554433334456678899999999999
Q ss_pred HHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Q 007169 310 YERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (615)
Q Consensus 310 ~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (615)
+++...+.++..|+++++++ +++..+++.|+++++|++.++|+++..|.+......
T Consensus 240 ~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 296 (579)
T PLN03102 240 NGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL----------------------- 296 (579)
T ss_pred cchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------------
Confidence 99887777888898888776 788999999999999999999999999876311000
Q ss_pred cCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---------
Q 007169 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--------- 459 (615)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--------- 459 (615)
....+++.+++||+++++.+.++++. +|++++++||+||+++.++.....+
T Consensus 297 -------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 356 (579)
T PLN03102 297 -------------------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQ 356 (579)
T ss_pred -------------------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCccc
Confidence 00035778899999999999999876 5999999999999976443211100
Q ss_pred -----CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec
Q 007169 460 -----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (615)
Q Consensus 460 -----~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (615)
...+..+.++++ ++++|.+..+.++.+. ...|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+
T Consensus 357 ~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~-~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~ 432 (579)
T PLN03102 357 QMELKARQGVSILGLAD--VDVKNKETQESVPRDG-KTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHP 432 (579)
T ss_pred ccccccCCCcccccccc--eEEeccccccccCCCC-CCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcC
Confidence 112333444444 5556644444444321 1279999999999999999999999999 689999999999999
Q ss_pred CCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----------------HHH
Q 007169 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----------------QDA 595 (615)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----------------~~~ 595 (615)
||+|+|+||+||+||+ +|++|+|.+||+++.+||.|.+++|+|.+++ +.++|+|+++ ..+
T Consensus 433 dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 511 (579)
T PLN03102 433 DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERD 511 (579)
T ss_pred CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHH
Confidence 9999999999999996 8999999999999999999999999998764 5789999864 235
Q ss_pred HHHHHHHc
Q 007169 596 LKAWAASE 603 (615)
Q Consensus 596 l~~~~~~~ 603 (615)
+.++++++
T Consensus 512 l~~~~~~~ 519 (579)
T PLN03102 512 LIEYCREN 519 (579)
T ss_pred HHHHHHhh
Confidence 67777765
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=533.01 Aligned_cols=476 Identities=22% Similarity=0.310 Sum_probs=382.5
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc
Q 007169 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133 (615)
Q Consensus 54 ~~~~~~r~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~ 133 (615)
....+||+..... +.+...|+.++|.+.++++|+++|+.+. .+. +.+||+||.+++.++|..|.+.
T Consensus 10 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~ 75 (546)
T PLN02330 10 DNEHIFRSRYPSV-------PVPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSL 75 (546)
T ss_pred ccceeeccCCCCC-------CCCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHh
Confidence 3455777665442 1245688999999999999999999753 111 3599999999999999999999
Q ss_pred CCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEE
Q 007169 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIV 213 (615)
Q Consensus 134 Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii 213 (615)
|+++||+|+++++|+++|+++++||+++|++++|+++..+.+++.++++++++++++++......+.... +. ++
T Consensus 76 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i 149 (546)
T PLN02330 76 GLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VI 149 (546)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EE
Confidence 9999999999999999999999999999999999999999999999999999999999988776654321 12 33
Q ss_pred EECCCCCCCCCCCcCCCceEeeHHHHHhcCccCC--CCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC
Q 007169 214 VIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291 (615)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~ 291 (615)
.++... ......|++++....... .+.....++++++|+|||||||.||||++||+++...+......
T Consensus 150 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~ 219 (546)
T PLN02330 150 VLGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFS 219 (546)
T ss_pred EecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhc
Confidence 443211 011245666665432211 11233457899999999999999999999999998766542211
Q ss_pred cc--cCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhc
Q 007169 292 TK--FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (615)
Q Consensus 292 ~~--~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 367 (615)
.. ....++.+..+|++|.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+......
T Consensus 220 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---- 295 (546)
T PLN02330 220 VGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIV---- 295 (546)
T ss_pred cCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccc----
Confidence 11 224568999999999999875 456788999998877 7999999999999999999999999988652100
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccc
Q 007169 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMT 446 (615)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~T 446 (615)
....+. ..++|.+++||+++++++.+++++.| ++++++.||+|
T Consensus 296 ------------------------------~~~~~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~t 339 (546)
T PLN02330 296 ------------------------------EEFDLS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLT 339 (546)
T ss_pred ------------------------------cccccc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccc
Confidence 000000 01589999999999999999999988 89999999999
Q ss_pred cccccccccC-CC----CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCC
Q 007169 447 ETSCLISQLD-EG----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521 (615)
Q Consensus 447 E~~~~~~~~~-~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~ 521 (615)
|++++..... +. ....+++|.|+++++++|+|+++++.++.|. .|||+|+|+.++.||+++++.+++.++.+
T Consensus 340 E~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~ 416 (546)
T PLN02330 340 EHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT---PGELCVRSQCVMQGYYNNKEETDRTIDED 416 (546)
T ss_pred ccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCC---ceEEEEecchhhhhhccCccchhhhccCC
Confidence 9875543221 11 1344689999999999999977778888887 89999999999999999999999999889
Q ss_pred CeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------
Q 007169 522 GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------ 592 (615)
Q Consensus 522 gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------ 592 (615)
|||+|||+|++++||+++++||++|+||+ +|++|+|.+||+++.++|.|.+++|++.+++ +.++|+|++.
T Consensus 417 g~~~TGD~~~~~~dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~ 495 (546)
T PLN02330 417 GWLHTGDIGYIDDDGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKES 495 (546)
T ss_pred CceecccEEEEeCCCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCC
Confidence 99999999999999999999999999997 7999999999999999999999999997653 5788888864
Q ss_pred HHHHHHHHHHc
Q 007169 593 QDALKAWAASE 603 (615)
Q Consensus 593 ~~~l~~~~~~~ 603 (615)
.+++.++++++
T Consensus 496 ~~~l~~~~~~~ 506 (546)
T PLN02330 496 EEDILNFVAAN 506 (546)
T ss_pred HHHHHHHHHHh
Confidence 35678887753
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=527.17 Aligned_cols=445 Identities=25% Similarity=0.318 Sum_probs=371.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..+.+.|.+.++++||++|+.+. + +.+||+||+++++++|.+|.+ .|+++|++|+++++|+++|+++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46789999999999999999753 2 469999999999999999985 7999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.++++.+++++++++....+.+.+..... ....++.+. +++
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~------------------~~~ 133 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-YVQRVISIT------------------SLK 133 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-CcceEEEec------------------chH
Confidence 9999999999999999999999999999999999987766554443222 122233322 222
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH-H
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-V 316 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~-~ 316 (615)
++.... .....+..++++++|+|||||||.||+|+++|+++..........+.+..+|++++.+|++|.+++... +
T Consensus 134 ~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 210 (496)
T PRK06839 134 EIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAF 210 (496)
T ss_pred hhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHH
Confidence 332221 112234567899999999999999999999999988766655556678899999999999999998754 5
Q ss_pred HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
.++..|+++++.+ .++..+++.++++++|++.++|.+++.+.+....
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------- 258 (496)
T PRK06839 211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKF-------------------------------- 258 (496)
T ss_pred HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccc--------------------------------
Confidence 6789999998876 7999999999999999999999999988763100
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCCCCee
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACE 473 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~e 473 (615)
......++|.+++||+++++++.+.++.. |+++.+.||+||++..++..... ....+++|+|+++++
T Consensus 259 ----------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 327 (496)
T PRK06839 259 ----------ETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCD 327 (496)
T ss_pred ----------ccCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCce
Confidence 00011489999999999999999999886 99999999999998655443322 245789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCe
Q 007169 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553 (615)
Q Consensus 474 v~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G 553 (615)
++|+|+ +++.++.|+ .|||+|+|+.++.||+++++.++..+ .+|||+|||+|++|++|++++.||.+|+||. +|
T Consensus 328 ~~i~d~-~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~-~G 401 (496)
T PRK06839 328 YELIDE-NKNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIIS-GG 401 (496)
T ss_pred EEEECC-CcCCCCCCC---ceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEE-CC
Confidence 999994 455577776 89999999999999999999999888 6899999999999999999999999999995 89
Q ss_pred eeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHc
Q 007169 554 EYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 554 ~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~ 603 (615)
++|+|.+||+++.++|+|.+++|+|.++. +.++|+|++++ ++++++++++
T Consensus 402 ~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 460 (496)
T PRK06839 402 ENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLF 460 (496)
T ss_pred EEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 99999999999999999999999998754 47899999753 6788888753
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=533.68 Aligned_cols=469 Identities=26% Similarity=0.350 Sum_probs=379.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..|+.++|+++++++|+++|+.+. + +.+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++|
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 101 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence 348999999999999999999864 3 2489999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCC--------------
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP-------------- 223 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~-------------- 223 (615)
|+++|++++|+++.++.+++.+++++++++++|++......+.+..... .++.++.++.......
T Consensus 102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (573)
T PRK05605 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALR 180 (573)
T ss_pred HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeeccccccccccccccccccccc
Confidence 9999999999999999999999999999999999887666555443322 2344544432110000
Q ss_pred ---CCCcCCCceEeeHHHHHhcCccC---CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCc-cc-C
Q 007169 224 ---SLPITTGVQILTYSNLLSQGRSN---LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT-KF-Y 295 (615)
Q Consensus 224 ---~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~-~ 295 (615)
............|+++....... ........++++++++|||||||.||+|++||+++...+....... ++ .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 260 (573)
T PRK05605 181 KARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGD 260 (573)
T ss_pred ccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCC
Confidence 00001122345677765442211 0122335678999999999999999999999999988766443322 22 3
Q ss_pred CCcEEEEcCChHHHHHHHHH-HHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHH
Q 007169 296 PSDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373 (615)
Q Consensus 296 ~~d~~l~~lPl~h~~~~~~~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 373 (615)
.++++++.+|++|.+++... +.+++.|+++++.+ .++..+++.++++++|++.++|.+++.+.+.....
T Consensus 261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------- 331 (573)
T PRK05605 261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER--------- 331 (573)
T ss_pred CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc---------
Confidence 47899999999999998764 45788999998877 79999999999999999999999999887631100
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccccc
Q 007169 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS 453 (615)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~ 453 (615)
+ ...+++|.+++||+++++++.+++.+.+++++++.||+||++++++
T Consensus 332 ----------------~-----------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 378 (573)
T PRK05605 332 ----------------G-----------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV 378 (573)
T ss_pred ----------------C-----------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhh
Confidence 0 0014899999999999999999999988999999999999987666
Q ss_pred ccCCC-CCCCCCcCCCCCCeeEEEeecCC-CCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEE
Q 007169 454 QLDEG-DNLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (615)
Q Consensus 454 ~~~~~-~~~~~~vG~p~~~~ev~ivd~~~-~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~ 531 (615)
..... ....+++|.|+++++++|+|+++ +..++.|. .|||+++|+.++.||+++++.|.+.| .+|||+|||+|+
T Consensus 379 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~ 454 (573)
T PRK05605 379 GNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE---EGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVV 454 (573)
T ss_pred cCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC---eeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEE
Confidence 54332 24568999999999999999665 45666665 89999999999999999999999999 578999999999
Q ss_pred EecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHH
Q 007169 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAAS 602 (615)
Q Consensus 532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~ 602 (615)
+|++|+++++||+||+||+ +|++|+|.+||+++.+++.|.+++|+|.++. +.++++|+++ .+++.+++++
T Consensus 455 ~~~~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~ 533 (573)
T PRK05605 455 MEEDGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCRE 533 (573)
T ss_pred EcCCCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999996 8999999999999999999999999997643 5788888853 4677888876
Q ss_pred c
Q 007169 603 E 603 (615)
Q Consensus 603 ~ 603 (615)
+
T Consensus 534 ~ 534 (573)
T PRK05605 534 H 534 (573)
T ss_pred h
Confidence 4
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=551.87 Aligned_cols=434 Identities=20% Similarity=0.248 Sum_probs=357.4
Q ss_pred CCHHHHHHHHHHh--cCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 79 GTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 79 ~tl~~~l~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
.|+.++|.+++++ +||++|+... +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3788999998886 7999999642 148999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++++|++....+.+... . + ...
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~-~---------------------~~~ 124 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R-V---------------------AEA 124 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------c-c---------------------chh
Confidence 9999999999999999999999999999999999986544332110 0 0 001
Q ss_pred HHHHhcCc-cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc-cCcccCCCcEEEEcCChHHHHHHHH
Q 007169 237 SNLLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 237 ~~l~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
.++..... ..+....+..++++++|+|||||||.||||+++|+++++.+.... ..+.+.++|++++.+|++|.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 204 (705)
T PRK06060 125 AELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGN 204 (705)
T ss_pred hhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhH
Confidence 11111100 001112234578999999999999999999999999988776553 3467888999999999999988754
Q ss_pred -HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 315 -~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
.+.+++.|+++++.+ .++..+.+.++++++|+++++|+++.++.+....
T Consensus 205 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------------- 256 (705)
T PRK06060 205 SVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------------- 256 (705)
T ss_pred HHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------------
Confidence 566899999999876 6788889999999999999999999888652100
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCCCcCCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (615)
....++|.+++||+++++++.+.+.+.| ++++++.||+||++..+..........+++|+|++
T Consensus 257 ----------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~ 320 (705)
T PRK06060 257 ----------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP 320 (705)
T ss_pred ----------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCC
Confidence 0014899999999999999999999988 58999999999998655444333455788999999
Q ss_pred CeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEc
Q 007169 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550 (615)
Q Consensus 471 ~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl 550 (615)
+++++|+| ++++.++.|. .|||||+|++++.|||++|+.+. ..+|||+|||+|++++||+|+++||+||+||+
T Consensus 321 ~~~v~i~d-~~g~~~~~g~---~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~ 393 (705)
T PRK06060 321 PYEIRVVA-PDGTTAGPGV---EGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVI 393 (705)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEE
Confidence 99999999 5567777776 89999999999999999998753 36899999999999999999999999999997
Q ss_pred CCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
+|++|+|.+||+++.+||+|.+++|+|.++. +.++|+|++.+ .++.++++++
T Consensus 394 -~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~ 457 (705)
T PRK06060 394 -GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNR 457 (705)
T ss_pred -CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHh
Confidence 8999999999999999999999999997754 47899998743 2556666654
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-62 Score=534.07 Aligned_cols=449 Identities=20% Similarity=0.255 Sum_probs=352.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
-..|+.+.|.+.++++|+++|+... ++. +.+||+||.+++.++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 12 ~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~l 84 (540)
T PRK05857 12 LPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVL 84 (540)
T ss_pred CCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHH
Confidence 3468999999999999999999764 432 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++.++++++|++.........+......+. ++.++..... . ...
T Consensus 85 A~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~---~~~ 152 (540)
T PRK05857 85 ACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVT--------R---ESE 152 (540)
T ss_pred HHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeeccccc--------c---ccc
Confidence 999999999999999999999999999999999998765322211111111222 2222221100 0 000
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc----cCcccCCCcEEEEcCChHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT----LGTKFYPSDVYISYLPLAHIYER 312 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~----~~~~~~~~d~~l~~lPl~h~~~~ 312 (615)
..+ .. ..........++++++++|||||||.||||++||+++.+...... ..+....+++.++.+|++|.+++
T Consensus 153 ~~~-~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l 229 (540)
T PRK05857 153 HSL-DA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL 229 (540)
T ss_pred ccc-cc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH
Confidence 000 00 001112234678999999999999999999999999987654322 12345678899999999999998
Q ss_pred HHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 313 ~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
...+.+++.|+++++.+.++..+++.++++++|+++++|+++..+.+.....
T Consensus 230 ~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~---------------------------- 281 (540)
T PRK05857 230 WWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA---------------------------- 281 (540)
T ss_pred HHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC----------------------------
Confidence 8778889999998876688999999999999999999999999886531100
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----CCCCCcCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (615)
.....++|.+++||++++....+++. .+|+++++.||+||++.......... ...+++|+
T Consensus 282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 346 (540)
T PRK05857 282 --------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346 (540)
T ss_pred --------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeeecccCCCcCCceeeecccccccccccccCCcCc
Confidence 00114899999999999988876554 67999999999999975433222111 24578999
Q ss_pred CCCCeeEEEeecCCCCCCCCC--CCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 007169 468 PNAACEIKLVDVPEMNYTSED--QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~--~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (615)
|+++++++|+|.++....+.+ ...+.|||+|+|++++.|||++++.|++.| .+|||+|||+|++|++|++++.||.|
T Consensus 347 ~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~ 425 (540)
T PRK05857 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSS 425 (540)
T ss_pred ccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEecccc
Confidence 999999999995443333221 112389999999999999999999999999 68999999999999999999999999
Q ss_pred CeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
|+||+ +|++|+|.+||+++..||+|.+|+|+|.+++ +.++++|+++
T Consensus 426 ~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~ 474 (540)
T PRK05857 426 EMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVAS 474 (540)
T ss_pred ccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeC
Confidence 99996 8999999999999999999999999998764 3566666653
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=526.66 Aligned_cols=460 Identities=23% Similarity=0.315 Sum_probs=385.6
Q ss_pred CHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
+++++|...++++|+++|+.+. + +.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++++||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4788999999999999999764 2 359999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 007169 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (615)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
++|++++|+++.++.+++..++++++++++|++....+.+......++.+..++.++...... ........|+++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 146 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHAS-----EGGGESPSWPKL 146 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccccc-----CCccccccHHHh
Confidence 999999999999999999999999999999999887776666655666666677766432111 112234567776
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHH
Q 007169 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (615)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l 319 (615)
...... ....+...+++++|+|||||||.||||++||++++..+......+.+..+|++++.+|++|.+++...+.++
T Consensus 147 ~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 224 (515)
T TIGR03098 147 LALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF 224 (515)
T ss_pred hccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHH
Confidence 543322 122334568899999999999999999999999998888777777888999999999999999988788899
Q ss_pred HhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 007169 320 YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD 398 (615)
Q Consensus 320 ~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d 398 (615)
..|+++++.+ .++..+++.++++++|++.++|+++..+.+...
T Consensus 225 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------------ 268 (515)
T TIGR03098 225 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW------------------------------------ 268 (515)
T ss_pred HcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc------------------------------------
Confidence 9999999887 789999999999999999999999988764100
Q ss_pred HHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC-CCCCCCCcCCCCCCeeEEE
Q 007169 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKL 476 (615)
Q Consensus 399 ~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~ev~i 476 (615)
......++|.+++||+++++++.+.+++.+ ++.+++.||+||++........ .....+++|+|+++++++|
T Consensus 269 -------~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 341 (515)
T TIGR03098 269 -------PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV 341 (515)
T ss_pred -------CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEE
Confidence 000114899999999999999999999988 7889999999998765443322 1346789999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC-----------CCeeecccEEEEecCCcEEEEccCC
Q 007169 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-----------DGWFHTGDIGMWIPGGRLKIIDRKK 545 (615)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~-----------~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (615)
+| +++..++.++ .|||+++|+.++.|||++++.|++.|.. ++||+|||+|++|+||++++.||.|
T Consensus 342 ~~-~~~~~~~~~~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~ 417 (515)
T TIGR03098 342 LR-EDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRD 417 (515)
T ss_pred EC-CCCCCCCCCC---ceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccc
Confidence 99 5566677666 8999999999999999999999887743 3489999999999999999999999
Q ss_pred CeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
|+||+ +|++|+|++||+++.++|.|.+++|+|.++. +.+++++++ +.+++.++++++
T Consensus 418 d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~ 483 (515)
T TIGR03098 418 EMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRAR 483 (515)
T ss_pred cceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 99996 8999999999999999999999999997653 578888874 346778888763
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=527.52 Aligned_cols=465 Identities=23% Similarity=0.314 Sum_probs=378.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|+..++++|++.++.++ .+ ++++.+||.||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRR--VE---GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEee--cc---CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 47899999999999999888654 12 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++++++.++++.+++++++++.+..+.+.+....++.++.++.++.... .. .....+.++++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~ 159 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAH-LP----AGSTPLLCYET 159 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCc-cc----cCCcccccHHH
Confidence 99999999999999999999999999999999998877776666656666776666554221 00 11234567777
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHH--hhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~--~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
+...... ........++++++++|||||||.||||++||++++.... .....+++.++|++++.+|++|.+++...+
T Consensus 160 l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (539)
T PRK07008 160 LVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY 238 (539)
T ss_pred HhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHH
Confidence 7654322 1122345678899999999999999999999999875432 233457788899999999999998877667
Q ss_pred HHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 007169 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (615)
Q Consensus 317 ~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (615)
.++..|+++++.+ +++..+++.++++++|++.++|.++..+.+.....
T Consensus 239 ~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------------ 288 (539)
T PRK07008 239 SAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------------ 288 (539)
T ss_pred HHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------------
Confidence 7889999999875 68999999999999999999999999887531100
Q ss_pred chhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--------C---CCCC
Q 007169 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--------D---NLSG 463 (615)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--------~---~~~~ 463 (615)
....+++|.+++||+++++++.+++++.+++++++.||+||++..++..... + ....
T Consensus 289 ------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (539)
T PRK07008 289 ------------GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE 356 (539)
T ss_pred ------------CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcc
Confidence 0001489999999999999999999998999999999999998654432211 0 1246
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|+|+|+++++|+| ++++.++.+.. ..|||+++|++++.||+++++ ..+ .+|||+|||+|++|+||+++++||
T Consensus 357 ~~G~p~pg~~~~i~d-~~~~~~~~~~~-~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR 430 (539)
T PRK07008 357 KQGRVIYGVDMKIVG-DDGRELPWDGK-AFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDR 430 (539)
T ss_pred cCCccccceEEEEEC-CCCCccCCCCC-cceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeec
Confidence 799999999999999 45555554321 269999999999999999984 334 479999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
++|+||. +|++|+|.+||+++..+|.|.+++|+|.++. +.++++|+. +++++.++++++
T Consensus 431 ~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 498 (539)
T PRK07008 431 SKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGK 498 (539)
T ss_pred ccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhh
Confidence 9999995 8999999999999999999999999997764 467777774 346788888764
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=528.13 Aligned_cols=457 Identities=23% Similarity=0.305 Sum_probs=376.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|...++++|+++|+.+. + +.+||+||.+++.++|..|.+.|+++||+|+|+++|+++++++++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l 75 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF 75 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999763 2 348999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++.++++....+.+.......+....++.++... ...++
T Consensus 76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 143 (528)
T PRK07470 76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR------------AGLDY 143 (528)
T ss_pred HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc------------ccccH
Confidence 999999999999999999999999999999999999877665555444444555566554321 12356
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC--cccCCCcEEEEcCChHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
+++...............++++++|+|||||||.||||+++|+++...+...... .+...+|+++.++|++|.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 223 (528)
T PRK07470 144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ 223 (528)
T ss_pred HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence 6665443222222334567899999999999999999999999997655432221 24678899999999999999865
Q ss_pred HHHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 315 QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
. ..++.|++.++++ .++..+++.|+++++|++.++|.+++.+.+...
T Consensus 224 ~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 273 (528)
T PRK07470 224 L-CQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA----------------------------- 273 (528)
T ss_pred H-HHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC-----------------------------
Confidence 4 4577787777664 689999999999999999999999988765210
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--------CCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--------DNLSG 463 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--------~~~~~ 463 (615)
......+++|.+++||++++++..+++.+.+|.++++.||+||+++.++..... ....+
T Consensus 274 -------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 340 (528)
T PRK07470 274 -------------VDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIG 340 (528)
T ss_pred -------------cCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceee
Confidence 000111589999999999999999999888899999999999988655543211 23457
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|.|+++++++++| ++++.++.|+ .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++||++++.||
T Consensus 341 ~~G~~~~g~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR 415 (528)
T PRK07470 341 TCGFERTGMEVQIQD-DEGRELPPGE---TGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415 (528)
T ss_pred ccCcccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCC
Confidence 899999999999999 5677777776 89999999999999999999999988 689999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
+||+||+ +|++|+|.+||+++.++|.|.+++|+|.+++ +.+++++++ +++++.++++++
T Consensus 416 ~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (528)
T PRK07470 416 ASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGK 483 (528)
T ss_pred ccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHh
Confidence 9999996 8999999999999999999999999998764 367788875 346677777753
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=521.76 Aligned_cols=438 Identities=19% Similarity=0.247 Sum_probs=365.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
+++.+.|+++++++||++|+.+. + +.+||.||.+++.++|.+|.+.|. +|++|+|+++|+++|+++++||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 36889999999999999999753 2 359999999999999999999984 8999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++++++.++++.++++.+|++......+... ...++.++. +.+
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~------------------~~~ 126 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE------------------WKR 126 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh------------------hhh
Confidence 99999999999999999999999999999999987654443211 012222221 111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (615)
....... .........+++++|+|||||||.||||+++|++++..+......+++.++|+++...|++|..++...+.+
T Consensus 127 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~ 205 (487)
T PRK07638 127 MIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST 205 (487)
T ss_pred hhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHH
Confidence 1111111 011112235678999999999999999999999999888877777888999999999999999887777789
Q ss_pred HHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007169 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (615)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (615)
++.|+++++.+ +++..+++.++++++|+++++|+++..+.+.-
T Consensus 206 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------------ 249 (487)
T PRK07638 206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN------------------------------------ 249 (487)
T ss_pred HccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc------------------------------------
Confidence 99999999887 79999999999999999999999998886520
Q ss_pred hHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-CCCCCCcCCCCCCeeEE
Q 007169 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIK 475 (615)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ 475 (615)
....+.+.++++|++++.+..+++++.+ ++++++.||+||++.++...... ....+++|.|+++++++
T Consensus 250 ----------~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 319 (487)
T PRK07638 250 ----------RVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVR 319 (487)
T ss_pred ----------CcCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEE
Confidence 0012455677899999999999999988 78899999999998766544322 24567999999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeee
Q 007169 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY 555 (615)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~ 555 (615)
|+| +++..++.|. .|||+|+|+.++.|||++++.+.+.+ .+|||+|||+|++|+||+++++||++|+||+ +|++
T Consensus 320 i~d-~~g~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~-~G~~ 393 (487)
T PRK07638 320 ICN-EAGEEVQKGE---IGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILF-GGIN 393 (487)
T ss_pred EEC-CCCCCCCCCC---CeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEe-CCEE
Confidence 999 5667777776 89999999999999999999888766 7899999999999999999999999999997 8999
Q ss_pred echHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe--CHHHHHHHHHHc
Q 007169 556 IAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV--DQDALKAWAASE 603 (615)
Q Consensus 556 v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~--~~~~l~~~~~~~ 603 (615)
|+|.+||+++.++|+|.+++|+|.+++ +.++++|+. +.++++++++++
T Consensus 394 v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~l~~~~~~~ 446 (487)
T PRK07638 394 IFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQR 446 (487)
T ss_pred ECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCCHHHHHHHHHHH
Confidence 999999999999999999999998764 577888874 456778888763
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-61 Score=528.26 Aligned_cols=461 Identities=21% Similarity=0.293 Sum_probs=381.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.|+.++|++.++++||++|+... ++ +.+||+||.+++.++|++|++.|+++||+|+++++|+++|+++++||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 58999999999999999998753 33 35899999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc-----hHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+++|++++|+++.++.+++.++++.+++++++++... .+.+......++.++.++.++...... ..
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 165 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPAT---------SS 165 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCc---------Cc
Confidence 9999999999999999999999999999999997532 334444444556666777766532110 11
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
.++.++....... .......++++++|+|||||||.||+|++||++++..........++.++|++++.+|++|.+++.
T Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 244 (547)
T PRK06087 166 LSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFL 244 (547)
T ss_pred cCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHH
Confidence 3455554432221 122335678999999999999999999999999988877776667888999999999999999976
Q ss_pred H-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 314 N-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 314 ~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
. .+.+++.|+++++.+ .++..+++.++++++|+++++|..+..++......
T Consensus 245 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~--------------------------- 297 (547)
T PRK06087 245 HGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ--------------------------- 297 (547)
T ss_pred HHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------------
Confidence 5 456788999999887 78999999999999999998888776665421100
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC--CCCCCcCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (615)
....+++|.+++||+++++++.+.+... |+++++.||+||+++..+...... ...+++|.|+
T Consensus 298 ---------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~ 361 (547)
T PRK06087 298 ---------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA 361 (547)
T ss_pred ---------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCccC
Confidence 0011489999999999999999988775 999999999999987665443221 3456789999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
++++++++| +++..++.|. .|||+++|+.++.||+++++.+...|+.+|||+|||+|++|++|+++++||.+|+|+
T Consensus 362 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~ 437 (547)
T PRK06087 362 AGVEIKVVD-EARKTLPPGC---EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIV 437 (547)
T ss_pred CCceEEEEc-CCCCCCcCCC---cceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhh
Confidence 999999999 6667777776 899999999999999999999999998899999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHcCC
Q 007169 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASEGI 605 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~~~ 605 (615)
. +|++|+|.+||+++.++|+|.+++|+|.+++ +.++++|++++ +++.+++.++.+
T Consensus 438 ~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 502 (547)
T PRK06087 438 R-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRV 502 (547)
T ss_pred c-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccc
Confidence 5 8999999999999999999999999997654 47888888643 566676655443
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-61 Score=527.53 Aligned_cols=458 Identities=26% Similarity=0.341 Sum_probs=385.5
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
.-+|+.+.|..+++.+|+++|+.+. +. .+||.||.++++++|.+|.+.|+++||+|+|+++|+++|+++++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~~------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFL---GN------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999764 33 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++++++++++++....+.+.......+.++.++.+++... ....++
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 155 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD----------DSVLGY 155 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc----------ccccCH
Confidence 9999999999999999999999999999999999998776666554444566676776653210 122456
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCccc-CCCcEEEEcCChHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF-YPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~-~~~d~~l~~lPl~h~~~~~~~ 315 (615)
+++....... .+......+++++++|||||||.||||++||+++...+......+++ ..++++++.+|++|.+++...
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 234 (542)
T PRK07786 156 EDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSM 234 (542)
T ss_pred HHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHH
Confidence 6665443221 12233456789999999999999999999999999888776666666 578999999999999999778
Q ss_pred HHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.......
T Consensus 235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---------------------------- 286 (542)
T PRK07786 235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR---------------------------- 286 (542)
T ss_pred HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----------------------------
Confidence 88999999999865 68999999999999999999999999887621100
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC--CCCCCcCCCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (615)
. -..++|.+++||+++++++.+++++.| ++++++.||+||++.+.+.....+ ...+++|.|+
T Consensus 287 ---~------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 351 (542)
T PRK07786 287 ---P------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVI 351 (542)
T ss_pred ---c------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccC
Confidence 0 002699999999999999999999988 789999999999987655433222 3567899999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
++++++|+| +++..++.|. .|||+++|+.++.||+++++.+.+.| .+|||+|||+++++++|.++++||.||+||
T Consensus 352 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~ 426 (542)
T PRK07786 352 PTVAARVVD-ENMNDVPVGE---VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMII 426 (542)
T ss_pred CCceEEEEC-CCCCCCcCCC---ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEE
Confidence 999999999 6667777776 89999999999999999999999999 689999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHc
Q 007169 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASE 603 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~ 603 (615)
+ +|++|+|.+||+++.++|.|.+++|+|.+++ +.++++|++++ +++.++++++
T Consensus 427 ~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~ 489 (542)
T PRK07786 427 S-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDR 489 (542)
T ss_pred e-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhh
Confidence 6 8999999999999999999999999997654 57888888642 5667777653
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-61 Score=520.96 Aligned_cols=437 Identities=27% Similarity=0.359 Sum_probs=369.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
++|+.+.|++.+.++||++|+.+. + +.+||+||.++++++|+.|.+.|+++||+|+++++|+++|+++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468999999999999999999764 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.+++++++++.++++......+.... ...++
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-----------------------------~~~~~ 122 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------------------------SVKFA 122 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-----------------------------cccHH
Confidence 9999999999999999999999999999999999876544332210 01234
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
++...............++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|++++...+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 202 (483)
T PRK03640 123 ELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMR 202 (483)
T ss_pred HHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHH
Confidence 43332211112223346789999999999999999999999999887776666678899999999999999999887778
Q ss_pred HHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCch
Q 007169 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (615)
Q Consensus 318 ~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 396 (615)
++..|+++++.+ .++..+++.++++++|++.++|+++..+.+.....
T Consensus 203 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------------- 250 (483)
T PRK03640 203 SVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------------- 250 (483)
T ss_pred HHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------------
Confidence 899999999887 79999999999999999999999999886521100
Q ss_pred hhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCCCCeeE
Q 007169 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEI 474 (615)
Q Consensus 397 ~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev 474 (615)
....++|.+++||+++++.+.++++.. ++++++.||+||++..++...+. ....+++|+|++++++
T Consensus 251 -----------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~ 318 (483)
T PRK03640 251 -----------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCEL 318 (483)
T ss_pred -----------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEE
Confidence 011489999999999999999998874 99999999999987544433322 2456899999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCee
Q 007169 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGE 554 (615)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~ 554 (615)
+|+|. + ..++.|. .|||+++|++++.||+++++.+.+.| .+|||+|||++++++||+++++||+||++|+ +|+
T Consensus 319 ~i~~~-~-~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~-~G~ 391 (483)
T PRK03640 319 KIEKD-G-VVVPPFE---EGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIIS-GGE 391 (483)
T ss_pred EEecC-C-CcCCCCC---ceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEe-CCE
Confidence 99983 3 5666666 89999999999999999999999998 6899999999999999999999999999996 899
Q ss_pred eechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHc
Q 007169 555 YIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASE 603 (615)
Q Consensus 555 ~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~ 603 (615)
+|+|.+||+.+.++|+|.+++|++.+++ ..++++++++ .+++.++++++
T Consensus 392 ~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (483)
T PRK03640 392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEK 447 (483)
T ss_pred EECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999997654 4677777764 46788888753
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=585.62 Aligned_cols=458 Identities=16% Similarity=0.167 Sum_probs=360.4
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|+++++++||++|+++...........+.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 58999999999999999999864100000122457999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---hHHHHhhhcc----CCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---LNSLLSCLSE----VPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---~~~l~~~~~~----~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
+++|++++|++|.++++++.++++++++++++++... ...+...... ...+..+...+... ... ...
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~ 389 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS--LVG----GSL 389 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccc--ccc----ccc
Confidence 9999999999999999999999999999999987542 1111111100 01111111111100 000 000
Q ss_pred eEeeHHHHHhcCc--cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHH
Q 007169 232 QILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (615)
Q Consensus 232 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (615)
. ....++..... ..........++++++|+|||||||.||||+++|+++++.+.+....+++.++|+++...|++|.
T Consensus 390 ~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d 468 (1389)
T TIGR03443 390 E-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHD 468 (1389)
T ss_pred c-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceec
Confidence 0 00001100000 00111223467899999999999999999999999999998887777889999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 007169 310 YERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (615)
Q Consensus 310 ~~~~~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (615)
.++...+.+|+.|+++++.+ .++..+++.|+++++|+++++|++++.+.....
T Consensus 469 ~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------------------- 525 (1389)
T TIGR03443 469 PIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT----------------------- 525 (1389)
T ss_pred chHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc-----------------------
Confidence 98888889999999999876 368899999999999999999999987754100
Q ss_pred HHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----
Q 007169 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----- 459 (615)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~----- 459 (615)
....++|.+++||+++++...+.++..+ +++++++||+||++..++......
T Consensus 526 ----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 583 (1389)
T TIGR03443 526 ----------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDS 583 (1389)
T ss_pred ----------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEcccccccc
Confidence 0014899999999999999999888765 789999999999986555322111
Q ss_pred ------CCCCCcCCCCCCeeEEEeecCC-CCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC-------------
Q 007169 460 ------NLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------- 519 (615)
Q Consensus 460 ------~~~~~vG~p~~~~ev~ivd~~~-~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~------------- 519 (615)
....++|+|+++++++|+|.++ ...++.|. .|||||+|+++++||+|+|+.|+++|.
T Consensus 584 ~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~---~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~ 660 (1389)
T TIGR03443 584 TFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE---VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDL 660 (1389)
T ss_pred chhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCC---ceEEEecccccchhcCCChhHhhhhccCCcccCccccccc
Confidence 1246799999999999999644 35677776 899999999999999999999999883
Q ss_pred ---------------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--
Q 007169 520 ---------------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN-- 582 (615)
Q Consensus 520 ---------------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~-- 582 (615)
.+|||+|||+|++++||.|+|+||+||+||+ +|++|+|.|||++|.+||.|.+++|++..++
T Consensus 661 ~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~ 739 (1389)
T TIGR03443 661 DKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKI-RGFRIELGEIDTHLSQHPLVRENVTLVRRDKDE 739 (1389)
T ss_pred ccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEe-CcEEecHHHHHHHHHhCcchheeEEEEeeCCCC
Confidence 2589999999999999999999999999997 9999999999999999999999998875543
Q ss_pred -CeEEEEEEeC
Q 007169 583 -SALVAIVSVD 592 (615)
Q Consensus 583 -~~~va~vv~~ 592 (615)
+.++|+|+++
T Consensus 740 ~~~lva~vv~~ 750 (1389)
T TIGR03443 740 EPTLVSYIVPQ 750 (1389)
T ss_pred CeEEEEEEecc
Confidence 5799999976
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=518.79 Aligned_cols=453 Identities=26% Similarity=0.354 Sum_probs=378.0
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|..++ .+|++.|+... ++ +.+||.||.+++.++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~ 73 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT 73 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57899999999 99999998653 33 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++.+++.++++.+++++++++....+.+....... ....++.++.... ..+.+
T Consensus 74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~ 139 (504)
T PRK07514 74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT-------------GSLLE 139 (504)
T ss_pred HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc-------------ccHHH
Confidence 999999999999999999999999999999999988776665544332 2333444443211 11222
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-HHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVM 317 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~ 317 (615)
....... ........++++++|+|||||||.||+|++||+++...+......+++.++|++++.+|++|.+++.. .+.
T Consensus 140 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 218 (504)
T PRK07514 140 AAAAAPD-DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV 218 (504)
T ss_pred hhhhcCc-ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence 2111111 11223456789999999999999999999999999998877766778889999999999999999875 456
Q ss_pred HHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCch
Q 007169 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (615)
Q Consensus 318 ~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 396 (615)
+++.|+++++.+ .++..+++.+ .++|++.++|.++.++++...
T Consensus 219 ~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------------- 262 (504)
T PRK07514 219 ALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------------- 262 (504)
T ss_pred HHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC----------------------------------
Confidence 899999999887 6899999988 479999999999988765200
Q ss_pred hhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEE
Q 007169 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476 (615)
Q Consensus 397 ~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~i 476 (615)
+.....+++|.+++||+++++++.+.+++.+++++++.||+||++.............+++|.|+++++++|
T Consensus 263 --------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i 334 (504)
T PRK07514 263 --------LTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRV 334 (504)
T ss_pred --------CCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEE
Confidence 000112589999999999999999999999999999999999997655443333345678999999999999
Q ss_pred eecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 007169 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (615)
Q Consensus 477 vd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (615)
+|++++..++.|. .|||+|+|++++.||+++++.+++.|..+|||+|||+|+++++|.+++.||+||+||+ +|++|
T Consensus 335 ~d~~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~-~G~~i 410 (504)
T PRK07514 335 TDPETGAELPPGE---IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNV 410 (504)
T ss_pred EECCCCCCCCCCC---ceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEe-CCeEE
Confidence 9977788888776 8999999999999999999999999988999999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+|.+||+++.++++|.+++|++.+++ +.+++++++. .+++.++++++
T Consensus 411 ~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (504)
T PRK07514 411 YPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGR 466 (504)
T ss_pred CHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 99999999999999999999997754 4688999864 46777887764
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=520.57 Aligned_cols=463 Identities=28% Similarity=0.386 Sum_probs=396.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++.++|.+.++.+|+++|+.+. +. .+||+||++++.++|+.|.+.|+++|++|+++++|+++++++++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l 74 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF 74 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999865 33 39999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++.+++++++++....+.+.+.....+.++.++.+++.... ........+
T Consensus 75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (521)
T PRK06187 75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA------PLAPEVGEY 148 (521)
T ss_pred HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc------ccccccccH
Confidence 99999999999999999999999999999999999998888887777777777777777653311 111234566
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
.++....... .......++++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 227 (521)
T PRK06187 149 EELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY 227 (521)
T ss_pred HHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence 6766543322 223345678999999999999999999999999998888777788899999999999999999998877
Q ss_pred HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+.....
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------------- 276 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------------- 276 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------------
Confidence 7999999999887 78999999999999999999999999887632110
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCC------CCCCcCCCC
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN------LSGHVGSPN 469 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~------~~~~vG~p~ 469 (615)
.....++|.+++||++++.++.+++.+.+++++++.||+||++++......... ..+++|.|+
T Consensus 277 -----------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 345 (521)
T PRK06187 277 -----------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPL 345 (521)
T ss_pred -----------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCcccccc
Confidence 001148999999999999999999999889999999999999876665443333 667899999
Q ss_pred CCeeEEEeecCCCCCCCC--CCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 007169 470 AACEIKLVDVPEMNYTSE--DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~--~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (615)
++++++|+| +++..++. |+ .|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++|.+++.||.+|+
T Consensus 346 ~~~~~~i~~-~~~~~~~~~~g~---~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~ 420 (521)
T PRK06187 346 PGVEARIVD-DDGDELPPDGGE---VGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDV 420 (521)
T ss_pred CCeEEEEEC-CCCCCCCCCCCC---eeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccce
Confidence 999999999 55666666 55 89999999999999999999999998 6789999999999999999999999999
Q ss_pred EEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
||+ +|++|+|.+||+++.++++|.+++|++.+++ +.+++++++ +++++.++++++
T Consensus 421 i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~ 484 (521)
T PRK06187 421 IIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGR 484 (521)
T ss_pred EEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 997 8999999999999999999999999997653 578888885 346777887653
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=524.67 Aligned_cols=462 Identities=26% Similarity=0.357 Sum_probs=380.6
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..++.++|.+.++++|+++|+.+. ++. +.+||+||.+++.++|..|.+.|+++||+|+++++|+++|+++++|
T Consensus 15 ~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la 87 (559)
T PRK08315 15 EQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFA 87 (559)
T ss_pred hccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHH
Confidence 358999999999999999999875 332 4589999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhcc-------------CCCceEEEEECCCC
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSE-------------VPTVRLIVVIGGID 219 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~-------------~~~l~~ii~~~~~~ 219 (615)
|+++|++++|+++.++.+++..+++.++++++|++.... +.+.+...+ .+..+.++.++...
T Consensus 88 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 88 TAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred HHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 999999999999999999999999999999999987542 122221111 13344555544311
Q ss_pred CCCCCCCcCCCceEeeHHHHHhcCccC-----CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCccc
Q 007169 220 DQIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF 294 (615)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~ 294 (615)
......|+++....... ........++++++++|||||||.||||.+||++++..+......+++
T Consensus 168 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~ 237 (559)
T PRK08315 168 ----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL 237 (559)
T ss_pred ----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC
Confidence 11234566665432110 011223457889999999999999999999999999888887777889
Q ss_pred CCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcch
Q 007169 295 YPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371 (615)
Q Consensus 295 ~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~ 371 (615)
.++|+++..+|++|.+++.. .+.++..|+++++.. .++..+++.++++++|+++++|+++..++.....
T Consensus 238 ~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~-------- 309 (559)
T PRK08315 238 TEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF-------- 309 (559)
T ss_pred CCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc--------
Confidence 99999999999999999876 456888999998654 6899999999999999999999999877642100
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccc
Q 007169 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSC 450 (615)
Q Consensus 372 ~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~ 450 (615)
+.....++|.+++||++++.++.+.+.+.++.. +++.||+||++.
T Consensus 310 ----------------------------------~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~ 355 (559)
T PRK08315 310 ----------------------------------ARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSP 355 (559)
T ss_pred ----------------------------------CCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEccccccc
Confidence 000114899999999999999999999888754 999999999987
Q ss_pred cccccCCCC---CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecc
Q 007169 451 LISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527 (615)
Q Consensus 451 ~~~~~~~~~---~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TG 527 (615)
+++.....+ ....++|+|+++++++|+|+++++.++.|+ .|||+|+|++++.|||++|+.+++.|+.++||+||
T Consensus 356 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TG 432 (559)
T PRK08315 356 VSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE---QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432 (559)
T ss_pred ceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC---ceEEEEECchhhhhhcCChhHHhhcCCCCCCEEcc
Confidence 665443322 356799999999999999976578888787 89999999999999999999999999789999999
Q ss_pred cEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHH
Q 007169 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKA 598 (615)
Q Consensus 528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~ 598 (615)
|+|++|+||.++++||.+|+||+ +|++|+|.+||+++.++|+|.+++|++.+++ +.++++|++. .+++.+
T Consensus 433 D~~~~~~dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 511 (559)
T PRK08315 433 DLAVMDEEGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRD 511 (559)
T ss_pred ceEEEcCCceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHH
Confidence 99999999999999999999996 8999999999999999999999999997754 4688888753 467888
Q ss_pred HHHH
Q 007169 599 WAAS 602 (615)
Q Consensus 599 ~~~~ 602 (615)
++++
T Consensus 512 ~l~~ 515 (559)
T PRK08315 512 FCRG 515 (559)
T ss_pred HHHh
Confidence 8875
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=522.28 Aligned_cols=466 Identities=19% Similarity=0.253 Sum_probs=374.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+...++.++|.+.++++|+++|+... + +.+||+||.+++.++|++|.+.|+++||+|+++++|+++|+++
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~ 76 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVL 76 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHH
Confidence 345568999999999999999999742 2 3599999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhcc-CCCceEEEEECCCCCCCCCCCcC
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSE-VPTVRLIVVIGGIDDQIPSLPIT 228 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~ 228 (615)
++||+++|++++|+++..+.+++.+++++++++++|++.+.. +.+...... .+.++.++.++..........
T Consensus 77 ~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (540)
T PRK06164 77 FLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPA-- 154 (540)
T ss_pred HHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCC--
Confidence 999999999999999999999999999999999999987642 222222211 234555665542111110000
Q ss_pred CCceEeeHHHHHhcCccCCC---CCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCC
Q 007169 229 TGVQILTYSNLLSQGRSNLQ---PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305 (615)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lP 305 (615)
...+.++......... ......++++++++|||||||.||||++||+++...+......+++.+++++++.+|
T Consensus 155 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p 230 (540)
T PRK06164 155 ----PGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALP 230 (540)
T ss_pred ----cccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 0011111111100000 012234688999999999999999999999999998888777788899999999999
Q ss_pred hHHHHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 306 LAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 306 l~h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
++|.+++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+... .
T Consensus 231 ~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~----~----------------- 289 (540)
T PRK06164 231 FCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG----E----------------- 289 (540)
T ss_pred chhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc----c-----------------
Confidence 999999988888999999998877 789999999999999999999999998876300 0
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcC-CCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---C
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA-SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---N 460 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg-~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~ 460 (615)
.....++|.+.++| ++.+.++.+++... ++++++.||+||+++.++...... .
T Consensus 290 ----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 346 (540)
T PRK06164 290 ----------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSV 346 (540)
T ss_pred ----------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcc
Confidence 00014788776665 66777777777765 899999999999987665443322 2
Q ss_pred CCCCcCCCC-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEE
Q 007169 461 LSGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (615)
Q Consensus 461 ~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (615)
...++|.|. ++++++|+|++++..++.|+ .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|++|.++
T Consensus 347 ~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~ 423 (540)
T PRK06164 347 RIEGGGRPASPEARVRARDPQDGALLPDGE---SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFV 423 (540)
T ss_pred eeccCccccCCCeEEEEecCCCCcCCCCCC---eeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEE
Confidence 334678875 89999999988888888887 89999999999999999999999999889999999999999999999
Q ss_pred EEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeC------HHHHHHHHHHc
Q 007169 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+.||.||+||+ +|++|+|++||+++.++|+|.+++|+|.+.. ..++++|+++ .+++.++++++
T Consensus 424 ~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~ 494 (540)
T PRK06164 424 YQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREA 494 (540)
T ss_pred EEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 99999999997 8999999999999999999999999996533 4788999874 46788888864
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=524.12 Aligned_cols=461 Identities=25% Similarity=0.356 Sum_probs=376.8
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|.+.++++|+++|+++. ++. +.+||+||.+++.++|.+|.+.|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~ 90 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFAT 90 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 58999999999999999999875 322 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhc-------------cCCCceEEEEECCCCC
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLS-------------EVPTVRLIVVIGGIDD 220 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~-------------~~~~l~~ii~~~~~~~ 220 (615)
+++|++++|+++.++.+++.+++++++++++|++.... ..+.+... ..+.++.++.++....
T Consensus 91 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
T PRK12583 91 ARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP 170 (558)
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC
Confidence 99999999999999999999999999999999976432 12222111 1233444444432210
Q ss_pred CCCCCCcCCCceEeeHHHHHhcCccC-----CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccC
Q 007169 221 QIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295 (615)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~ 295 (615)
.....|+++...+... ........++++++++|||||||.||||++||+++.+.+......+++.
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 240 (558)
T PRK12583 171 ----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT 240 (558)
T ss_pred ----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence 1123455544332210 0111234578899999999999999999999999998888777778889
Q ss_pred CCcEEEEcCChHHHHHHHHH-HHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchH
Q 007169 296 PSDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (615)
Q Consensus 296 ~~d~~l~~lPl~h~~~~~~~-~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 372 (615)
++|++++.+|++|.++.... +.++..|+++++.. .++..+++.++++++|+++++|+++..+......
T Consensus 241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--------- 311 (558)
T PRK12583 241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR--------- 311 (558)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---------
Confidence 99999999999999998764 56788899888754 6899999999999999999999998776542100
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-Ccccccccccccccc
Q 007169 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCL 451 (615)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~ 451 (615)
.+ ....++|.+++||+++++++.+++.+.++ ..+++.||+||++++
T Consensus 312 ----------------~~-----------------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 358 (558)
T PRK12583 312 ----------------GN-----------------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPV 358 (558)
T ss_pred ----------------cC-----------------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccc
Confidence 00 00148999999999999999999988886 479999999999877
Q ss_pred ccccCCC---CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeeccc
Q 007169 452 ISQLDEG---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528 (615)
Q Consensus 452 ~~~~~~~---~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGD 528 (615)
++..... ....+++|.|+++++++|+|++ +..++.|+ .|||+++|+.++.||+++++.+.+.|+.+|||+|||
T Consensus 359 ~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD 434 (558)
T PRK12583 359 SLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGD 434 (558)
T ss_pred eeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCC---eeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccc
Confidence 6654322 2356789999999999999955 77777776 899999999999999999999999888899999999
Q ss_pred EEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHH
Q 007169 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAW 599 (615)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~ 599 (615)
+|++++||++++.||+||+||+ +|++|+|.+||+++.++|+|.+++|+|.++. +.++++|+++ +++++++
T Consensus 435 l~~~~~dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~ 513 (558)
T PRK12583 435 LATMDEQGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREF 513 (558)
T ss_pred eEEECCCccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHH
Confidence 9999999999999999999996 8999999999999999999999999997654 5788888864 4677888
Q ss_pred HHHc
Q 007169 600 AASE 603 (615)
Q Consensus 600 ~~~~ 603 (615)
++++
T Consensus 514 ~~~~ 517 (558)
T PRK12583 514 CKAR 517 (558)
T ss_pred HHhh
Confidence 7753
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=519.88 Aligned_cols=462 Identities=26% Similarity=0.366 Sum_probs=383.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|...++++|+++|+.+. + +.+||+||.+++.++|..|.+.|+++||+|+++++|+++|+++++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~ 79 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999764 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++.++++++|++....+.+.+....... ..+....... .......+..+
T Consensus 80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~ 152 (523)
T PRK08316 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLG------GREAPGGWLDF 152 (523)
T ss_pred HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeeccc------ccccccchhhH
Confidence 9999999999999999999999999999999999998887776655433331 1111111100 00111233555
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
+++....... ........+++++++|||||||.||+|.+||++++.........+++.++|++++.+|++|.+++...+
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~ 231 (523)
T PRK08316 153 ADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL 231 (523)
T ss_pred HHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHH
Confidence 6555433221 123445678999999999999999999999999998877776677889999999999999999987644
Q ss_pred -HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 007169 317 -MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (615)
Q Consensus 317 -~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (615)
.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+...
T Consensus 232 ~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------------- 279 (523)
T PRK08316 232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD-------------------------------- 279 (523)
T ss_pred HHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc--------------------------------
Confidence 4688999999986 799999999999999999999999988765210
Q ss_pred chhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC--CCCCCcCCCCCC
Q 007169 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAA 471 (615)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~ 471 (615)
.+.....++|.+++||++++.++.+.+++.+ ++++++.||+||++.+.+...+.+ ...+++|+|+++
T Consensus 280 ----------~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~ 349 (523)
T PRK08316 280 ----------FDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLN 349 (523)
T ss_pred ----------cccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCC
Confidence 0001114899999999999999999999988 789999999999987666544332 456889999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 007169 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (615)
Q Consensus 472 ~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (615)
++++|+| +++..++.|. .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++||.+++.||.||+||+
T Consensus 350 ~~~~i~~-~~~~~~~~g~---~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~- 423 (523)
T PRK08316 350 VETRVVD-DDGNDVAPGE---VGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKT- 423 (523)
T ss_pred cEEEEEc-CCCCCCCCCC---cceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEe-
Confidence 9999999 5567777776 89999999999999999999999999 7899999999999999999999999999996
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+|++|+|++||+.+.++++|.+++|+|.+++ +.++++++++ .+.+.++++++
T Consensus 424 ~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 484 (523)
T PRK08316 424 GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRAR 484 (523)
T ss_pred CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999997755 4688898874 35677777653
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=521.40 Aligned_cols=458 Identities=20% Similarity=0.264 Sum_probs=376.4
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|.++++ |+++|+++. + +.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++||
T Consensus 25 ~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~ 93 (536)
T PRK10946 25 LPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFAL 93 (536)
T ss_pred ccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHH
Confidence 589999988887 999999853 2 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+++|++++++.+....+++..+++++++++++++.... .........++.++.++..+.. ..
T Consensus 94 ~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~~ 160 (536)
T PRK10946 94 LKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------GE 160 (536)
T ss_pred HHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------CC
Confidence 99999888877777888999999999999999986531 1122222234555655554321 11
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
..+.+++..... ..+..+..++++++++|||||||.||||++||+++...+......+++.++|++++.+|++|.+++.
T Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~ 239 (536)
T PRK10946 161 HSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMS 239 (536)
T ss_pred ccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccch
Confidence 234444433222 1122345678999999999999999999999999999988777778889999999999999998876
Q ss_pred H--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcC
Q 007169 314 N--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (615)
Q Consensus 314 ~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (615)
. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+.+.....
T Consensus 240 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------------ 295 (536)
T PRK10946 240 SPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS------------------------ 295 (536)
T ss_pred hhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc------------------------
Confidence 4 566899999998876 7899999999999999999999999988764211000
Q ss_pred CCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC-CCCCCCCCcCCCC
Q 007169 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPN 469 (615)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~ 469 (615)
....+++|.+++||+++++++.+.+.+.+|+++++.||+||++....... ......+++|+|+
T Consensus 296 ----------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~ 359 (536)
T PRK10946 296 ----------------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPM 359 (536)
T ss_pred ----------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCccc
Confidence 00014899999999999999999999989999999999999754332221 1123467899999
Q ss_pred -CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeE
Q 007169 470 -AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548 (615)
Q Consensus 470 -~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~i 548 (615)
|+++++|+| ++++.++.|+ .|||+++|+.++.|||++++.|++.|+.+|||+|||+|++|+||++++.||.+|+|
T Consensus 360 ~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i 435 (536)
T PRK10946 360 SPDDEVWVAD-ADGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQI 435 (536)
T ss_pred CCCceEEEEC-CCCCCCCCCC---ccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEecccccee
Confidence 899999999 5667777776 89999999999999999999999999889999999999999999999999999999
Q ss_pred EcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHcCCC
Q 007169 549 KLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASEGIQ 606 (615)
Q Consensus 549 kl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~~~~ 606 (615)
|+ +|++|+|.+||+++.++|+|.+++|++.+++ +.++|+|++ +.+++.++++++.+.
T Consensus 436 ~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~l~~~~~~~~l~ 499 (536)
T PRK10946 436 NR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPLKAVQLRRFLREQGIA 499 (536)
T ss_pred ec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCCCCHHHHHHHHHhCCcc
Confidence 96 9999999999999999999999999998754 478898885 457888999876443
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-60 Score=520.60 Aligned_cols=470 Identities=23% Similarity=0.336 Sum_probs=374.8
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++.++|...++++|+++|+++. + +.+||.||.+++.++|.+|.+.|+++||+|+++++|+++|+++++
T Consensus 21 ~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~l 91 (557)
T PRK07059 21 QYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIA 91 (557)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999864 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCC-CCCC-----------
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QIPS----------- 224 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~-~~~~----------- 224 (615)
||+++|++++|+++.++.+++.+++++++++++|++......+.+.... ...+.++....... ....
T Consensus 92 a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (557)
T PRK07059 92 AVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK-TAVKHVVVASMGDLLGFKGHIVNFVVRRVK 170 (557)
T ss_pred HHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc-cCCceeEEeccccccccccccccccccccc
Confidence 9999999999999999999999999999999999987765555444332 22333333221100 0000
Q ss_pred --CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCc----cc---C
Q 007169 225 --LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT----KF---Y 295 (615)
Q Consensus 225 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~----~~---~ 295 (615)
.........+.++++...+...........++++++|+|||||||.||||+++|++++..+......+ .. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 250 (557)
T PRK07059 171 KMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRP 250 (557)
T ss_pred ccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCC
Confidence 00000112245566655443322233446789999999999999999999999999987654332221 11 1
Q ss_pred CCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchH
Q 007169 296 PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (615)
Q Consensus 296 ~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 372 (615)
..+.+++.+|++|.+++.. .+.++..|++.++.+ .++..+++.++++++|.+.++|.++..+.....
T Consensus 251 ~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---------- 320 (557)
T PRK07059 251 DQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD---------- 320 (557)
T ss_pred CCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC----------
Confidence 2457888999999998764 456788888877765 588999999999999999999999998865200
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccc
Q 007169 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452 (615)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~ 452 (615)
.. ....+++|.++.||+++++.+.+.|++.+++++++.||+||++.++
T Consensus 321 ------------------------~~--------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 368 (557)
T PRK07059 321 ------------------------FD--------KLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVA 368 (557)
T ss_pred ------------------------cC--------cCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchh
Confidence 00 0001478999999999999999999998999999999999998766
Q ss_pred cccCCC-CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEE
Q 007169 453 SQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (615)
Q Consensus 453 ~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~ 531 (615)
+..... ....+++|.|+++++++|+| +++..++.|. .|||+++|+.++.|||++++.+.+.|..+|||+|||+|+
T Consensus 369 ~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~ 444 (557)
T PRK07059 369 TCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGE---PGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGV 444 (557)
T ss_pred hcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEE
Confidence 544322 23467899999999999999 5667777776 899999999999999999999999998899999999999
Q ss_pred EecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHc
Q 007169 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASE 603 (615)
Q Consensus 532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~ 603 (615)
+++||+++++||++|+||+ +|++|+|.+||+++.++|+|.+++|+|.++. +.++++|+.. .+++.++++++
T Consensus 445 ~~~~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~ 523 (557)
T PRK07059 445 MDERGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDVKAFCKER 523 (557)
T ss_pred EcCCCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999997 8999999999999999999999999997654 4688888853 46778888764
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-61 Score=525.26 Aligned_cols=436 Identities=21% Similarity=0.271 Sum_probs=335.2
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 007169 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA 160 (615)
Q Consensus 81 l~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (615)
+.+.|+++++++|+++|+.+. + .+.++++||+||.++++++|++|.+. ++||+|+|+++|+++|+++++||++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 889999999999999999754 2 23467899999999999999999988 8999999999999999999999999
Q ss_pred cCCeEEecCCC--------CCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCce
Q 007169 161 YSFISVPLYDT--------LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (615)
Q Consensus 161 ~G~v~vpl~~~--------~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (615)
+|++++ +++. ...+++.+++++++++++|++....+.+...... +.+.+
T Consensus 77 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~--------------- 133 (525)
T PRK05851 77 AGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD--------------- 133 (525)
T ss_pred cCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc---------------
Confidence 999865 4332 1235566789999999999987765544332110 00100
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccC-CCcEEEEcCChHHHHH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-PSDVYISYLPLAHIYE 311 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~-~~d~~l~~lPl~h~~~ 311 (615)
+........ ..+.....++++++|+|||||||.||||++||+++++.+......+++. ++|++++++|++|.++
T Consensus 134 ---~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 208 (525)
T PRK05851 134 ---LATAAHTNR--SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMG 208 (525)
T ss_pred ---ccccccccc--cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCcc
Confidence 000000000 0111224678999999999999999999999999999888777777888 8999999999999999
Q ss_pred HHHHHHHHHhCcEEEEec---C--ChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 312 RANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 312 ~~~~~~~l~~G~~i~~~~---~--~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
+...+.+++.|+++++.+ + ++..+++.++++++|++...|.++..+.+. ....
T Consensus 209 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~-~~~~--------------------- 266 (525)
T PRK05851 209 LAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKY-ARRV--------------------- 266 (525)
T ss_pred HHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHh-hccc---------------------
Confidence 987788999999999875 2 678899999999999875544444333221 0000
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH---hCC---ccccccccccccccccccCCC--
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG-- 458 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~---~g~---~v~~~YG~TE~~~~~~~~~~~-- 458 (615)
.....+++|.+++||+++++++.++|.+. +|+ .+++.||+||++..++...+.
T Consensus 267 -------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 327 (525)
T PRK05851 267 -------------------SDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIG 327 (525)
T ss_pred -------------------cCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCC
Confidence 00001489999999999999999988764 454 499999999997655543221
Q ss_pred -------------CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeee
Q 007169 459 -------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525 (615)
Q Consensus 459 -------------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~ 525 (615)
....+++|+|+++++++|+|.+....++.|. .|||+|+|++++.|||++|+.+ .+|||+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~ 399 (525)
T PRK05851 328 LRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE---IGEIEIRGASMMSGYLGQAPID-----PDDWFP 399 (525)
T ss_pred ceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCC---eEEEEEecCchhhccccCCccC-----CCCcee
Confidence 1234689999999999999965545566666 8999999999999999998643 579999
Q ss_pred cccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHH
Q 007169 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALK 597 (615)
Q Consensus 526 TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~ 597 (615)
|||+|+++ +|+|+|+||+||+||+ +|++|+|.+||+++.+||+|.+++|++.+++ +.+.++|++ +.+++.
T Consensus 400 TGDl~~~~-~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 477 (525)
T PRK05851 400 TGDLGYLV-DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGAR 477 (525)
T ss_pred ccceEEEE-CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHH
Confidence 99999997 8999999999999997 8999999999999999999999999986543 345555543 334444
Q ss_pred HHHHH
Q 007169 598 AWAAS 602 (615)
Q Consensus 598 ~~~~~ 602 (615)
+++++
T Consensus 478 ~~~~~ 482 (525)
T PRK05851 478 SEVVQ 482 (525)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=569.61 Aligned_cols=468 Identities=24% Similarity=0.325 Sum_probs=379.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...++.+.|.+.++++|+++|+... ++ +.+||+||.++++++|++|.+ ++++||+|+++++|++||++++
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~ 682 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN 682 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence 45678999999999999999999743 22 359999999999999999987 4899999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc--cCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~--~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+||+++|++++|+++..+.+++.++++++++++++++....+.+.+... ..+....++..++...... ..
T Consensus 683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 754 (1146)
T PRK08633 683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------KV 754 (1146)
T ss_pred HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------hh
Confidence 9999999999999999999999999999999999998876665542110 1222334454443211000 00
Q ss_pred eeHHHHHhcCccC-----CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHH
Q 007169 234 LTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 234 ~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h 308 (615)
..+.+........ ........++|+++++|||||||.||||++||++++..+......+++.++|++++.+|++|
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 834 (1146)
T PRK08633 755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834 (1146)
T ss_pred HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHH
Confidence 1122221110000 00013456899999999999999999999999999998887777788899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 007169 309 IYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (615)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (615)
.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+...
T Consensus 835 ~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 891 (1146)
T PRK08633 835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK----------------------- 891 (1146)
T ss_pred HHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc-----------------------
Confidence 999876 567899999998876 689999999999999999999999988765210
Q ss_pred HHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-------
Q 007169 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG------- 458 (615)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~------- 458 (615)
..+...+++|.+++||+++++++.+++++.+|+++++.||+||+++.++...+.
T Consensus 892 -------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 952 (1146)
T PRK08633 892 -------------------LHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952 (1146)
T ss_pred -------------------cCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccc
Confidence 000011589999999999999999999999999999999999998766543221
Q ss_pred ---CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC---CCeeecccEEEE
Q 007169 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE---DGWFHTGDIGMW 532 (615)
Q Consensus 459 ---~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~---~gw~~TGDlg~~ 532 (615)
....+++|+|+|+++++|+|+++++.++.|+ .|||+++|++++.||+++|+.|++.|.+ +|||+|||+|++
T Consensus 953 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~ 1029 (1146)
T PRK08633 953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE---DGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029 (1146)
T ss_pred cccCCCCCCccccCCCCEEEEEcCCCCccCCCCC---ceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEE
Confidence 1346789999999999999987888888887 8999999999999999999999998832 399999999999
Q ss_pred ecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCC--CcceEEEEeeCCC---CeEEEEEEe---CHHHHHHHHHHcC
Q 007169 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCK--FVGQCFVYGDSFN---SALVAIVSV---DQDALKAWAASEG 604 (615)
Q Consensus 533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p--~V~~~~V~g~~~~---~~~va~vv~---~~~~l~~~~~~~~ 604 (615)
|+||++++.||+||+||+ +|++|+|.|||+++.+|| .+.+++|++.+++ +.+++++++ +.++++++++++.
T Consensus 1030 ~~~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~l~~~~~~~~ 1108 (1146)
T PRK08633 1030 DEDGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDVEELKRAIKESG 1108 (1146)
T ss_pred cCCceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCccCHHHHHHHHHhcC
Confidence 999999999999999996 899999999999999999 4678999997765 478888875 4567888877654
Q ss_pred CC
Q 007169 605 IQ 606 (615)
Q Consensus 605 ~~ 606 (615)
++
T Consensus 1109 l~ 1110 (1146)
T PRK08633 1109 LP 1110 (1146)
T ss_pred CC
Confidence 43
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-60 Score=521.96 Aligned_cols=472 Identities=23% Similarity=0.298 Sum_probs=367.7
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..|+++.|.+.++.+|+++|+.+. . ..+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++|
T Consensus 19 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 89 (567)
T PLN02479 19 ALTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFG 89 (567)
T ss_pred ccCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 357899999999999999999753 2 3589999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCC-------CceEEEEECCCCCCCCCCCcCCC
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-------TVRLIVVIGGIDDQIPSLPITTG 230 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~ 230 (615)
|+++|++++|+++.++.+++.+++++++++++|++....+...+....+. ....++.++..............
T Consensus 90 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (567)
T PLN02479 90 VPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALG 169 (567)
T ss_pred HHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccc
Confidence 99999999999999999999999999999999999877655444332111 12234444322111000000011
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHH
Q 007169 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (615)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 310 (615)
.....|.+++...............+++++++|||||||.||||++||+++..........+++.+++++++.+|++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~ 249 (567)
T PLN02479 170 KGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCN 249 (567)
T ss_pred cCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhh
Confidence 12345777765432211111223345678899999999999999999999876665544556788899999999999999
Q ss_pred HHHHHHH-HHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 311 ERANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 311 ~~~~~~~-~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
++...+. .++.|.++++..+++..+++.++++++|++.++|+++..+.+.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 304 (567)
T PLN02479 250 GWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE------------------------- 304 (567)
T ss_pred hHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc-------------------------
Confidence 9876543 56677777666689999999999999999999999999887631100
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC--C------CC--
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD--E------GD-- 459 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~--~------~~-- 459 (615)
.. ...++++.++++|+++++++.+++++. ++++++.||+||+++.++... + ..
T Consensus 305 -----~~-----------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
T PLN02479 305 -----TI-----------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQ 367 (567)
T ss_pred -----cc-----------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccc
Confidence 00 001488999999999999999999875 899999999999865433211 0 00
Q ss_pred -CCCCCcCCCCCCee-EEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCc
Q 007169 460 -NLSGHVGSPNAACE-IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGR 537 (615)
Q Consensus 460 -~~~~~vG~p~~~~e-v~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~ 537 (615)
....++|.+.++++ ++|+|++++..++.+.. +.|||+++|++++.|||++|+.|++.| .+|||+|||+|++|++|+
T Consensus 368 ~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~-~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~ 445 (567)
T PLN02479 368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADGK-TMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGY 445 (567)
T ss_pred cccccccCCCcCCcCceeEEcCCCCcccCCCCC-CceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCcc
Confidence 11246788888886 89998666676655421 279999999999999999999999999 689999999999999999
Q ss_pred EEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----------HHHHHHHHHc
Q 007169 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----------DALKAWAASE 603 (615)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~l~~~~~~~ 603 (615)
++++||.||+||+ +|++|+|.+||+++.+||.|.+++|+|.+++ +.++++|++++ +++.++++++
T Consensus 446 l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~ 524 (567)
T PLN02479 446 IEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRER 524 (567)
T ss_pred EEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhh
Confidence 9999999999996 8999999999999999999999999998754 47899998653 3566777654
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-60 Score=513.63 Aligned_cols=448 Identities=23% Similarity=0.323 Sum_probs=369.1
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
+.++.++|.+.++++|+++|+.+. + +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 467899999999999999999764 2 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.++++.+++++++++.+...... . ....+.++.... ..+.
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~~~-------------~~~~ 131 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-----L--ETPKIVIDAAAQ-------------ADSR 131 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-----c--ccceEEecCccc-------------chhH
Confidence 9999999999999999999999999999999999876543321 0 112222322110 0111
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-HH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QV 316 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~ 316 (615)
.+.... ..........++++++++|||||||.||+|++||+++...+......+++..+|+++..+|++|.+++.. .+
T Consensus 132 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 210 (497)
T PRK06145 132 RLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGI 210 (497)
T ss_pred HHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHH
Confidence 111111 1111223356789999999999999999999999999876665555677889999999999999998865 35
Q ss_pred HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
.+++.|+++.+.+ .++..+++.++++++|++.++|+++..++.....
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~-------------------------------- 258 (497)
T PRK06145 211 AVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR-------------------------------- 258 (497)
T ss_pred HHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------------
Confidence 6789999998877 7999999999999999999999999888652100
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC--CCCCCCcCCCCCCe
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAAC 472 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ 472 (615)
.....+++|.+++||+++++++.+.+++.| +.++++.||+||+++.++..... ....+++|.|++++
T Consensus 259 ----------~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~ 328 (497)
T PRK06145 259 ----------DRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHV 328 (497)
T ss_pred ----------cccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCc
Confidence 000014799999999999999999999888 67899999999998765543322 23567899999999
Q ss_pred eEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 007169 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (615)
Q Consensus 473 ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (615)
+++++| +++..++.|. .|||+++|++++.||+++++.|++.| .++||+|||+|++|+||+++++||+||+||+ +
T Consensus 329 ~~~i~~-~~~~~~~~~~---~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~-~ 402 (497)
T PRK06145 329 EIRIAD-GAGRWLPPNM---KGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIIS-G 402 (497)
T ss_pred eEEEEC-CCCCCCCCCC---ceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEe-C
Confidence 999999 5566666665 89999999999999999999999999 6899999999999999999999999999996 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|++|+|.+||+++.++|+|.+++|++.+++ +.+++++++. ++++.++++++
T Consensus 403 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 462 (497)
T PRK06145 403 GENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQR 462 (497)
T ss_pred CeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999997754 5788999874 46788888765
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-60 Score=529.66 Aligned_cols=466 Identities=17% Similarity=0.140 Sum_probs=355.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEeecCc--cCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 82 HDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 82 ~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
..+|.+.++++||++|+++. +.. .++.+.+||+||.+++.++|++|+++|+++||+|+++++|++|++++++||+
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~ 254 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII 254 (728)
T ss_pred HHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34566665678999999886 321 2345789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch------HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
++|++++|+++.++++++.+++++++++++|+++... +....+..... ..++++........... ....
T Consensus 255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~---~~~~ 329 (728)
T PLN03052 255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVKL---REGD 329 (728)
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcccccc---ccCC
Confidence 9999999999999999999999999999999986432 11111111111 12333322110000000 0012
Q ss_pred eeHHHHHhcCccC--C--CCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHH
Q 007169 234 LTYSNLLSQGRSN--L--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (615)
Q Consensus 234 ~~~~~l~~~~~~~--~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~ 309 (615)
.+|++++...... . .+.....++++++|+|||||||.||||+++|++++..+......+++.++|+++++.|+.|+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~ 409 (728)
T PLN03052 330 MSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWM 409 (728)
T ss_pred ccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHH
Confidence 4677776542111 0 11112356899999999999999999999999987766555445678899999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEecC--ChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 310 YERANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 310 ~~~~~~~~~l~~G~~i~~~~~--~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
++....+.+|..|++++++++ ++..+++.++++++|++.++|++++.+.+.-.
T Consensus 410 ~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~------------------------- 464 (728)
T PLN03052 410 MGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC------------------------- 464 (728)
T ss_pred hHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC-------------------------
Confidence 998777789999999999974 55789999999999999999999988765200
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCC-CCCCCCCc
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDE-GDNLSGHV 465 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~-~~~~~~~v 465 (615)
..-+| .++||.+++||++++++...++...++ .++++.||+||+++.+....+ .....+++
T Consensus 465 ------~~~~d-----------lssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~ 527 (728)
T PLN03052 465 ------MAGLD-----------WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAF 527 (728)
T ss_pred ------cccCC-----------hhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCcc
Confidence 00001 148999999999999999888887765 579999999999764433222 22456889
Q ss_pred CCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCc--ccccccCChhhhhhccC------CCCeeecccEEEEecCCc
Q 007169 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL--IFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGR 537 (615)
Q Consensus 466 G~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~--v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~ 537 (615)
|.|.+|++++|+| ++++.++.|.+ ..|||+++++. ...+|+++. .+...|. .+.||+|||+|++|+||+
T Consensus 528 g~p~~g~~v~v~d-~~g~~v~~g~~-~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~ 604 (728)
T PLN03052 528 STPAMGCKLFILD-DSGNPYPDDAP-CTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTSGGY 604 (728)
T ss_pred ccCCCCceEEEEC-CCCCCCCCCCC-ceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECCCCe
Confidence 9999999999999 66777766641 16999998753 335677664 3334442 233999999999999999
Q ss_pred EEEEccCCCeEEcCCeeeechHHHHHHHh-cCCCcceEEEEeeCCC----CeEEEEEEeC--------HHHHHHHHH
Q 007169 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYA-KCKFVGQCFVYGDSFN----SALVAIVSVD--------QDALKAWAA 601 (615)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~-~~p~V~~~~V~g~~~~----~~~va~vv~~--------~~~l~~~~~ 601 (615)
++|+||.||+||+ +|++|+|.|||+++. .||+|.|++|+|.+++ +.++++|++. .++++++++
T Consensus 605 l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~ 680 (728)
T PLN03052 605 YRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFN 680 (728)
T ss_pred EEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHH
Confidence 9999999999996 899999999999994 8999999999997653 4789999965 256776654
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=513.03 Aligned_cols=457 Identities=21% Similarity=0.294 Sum_probs=381.1
Q ss_pred CCCHHHHHHHH-HHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 78 IGTTHDNFVRA-VDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 78 ~~tl~~~l~~~-a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
.++..+++.+. ++.+||++|+... + +.+||.||.++++++|++|.+.|+++|++|+++++|+++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 45677888876 6779999998643 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++.++.++..+.... ....+
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 142 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA-----------GEVQL 142 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc-----------ccccH
Confidence 9999999999999999999999999999999999998887777776666777777776654210 11344
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHh-hccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
.++...... ........++++++++|||||||.||||++||+++...+.. ....+++.++|++++.+|++|.+++...
T Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 221 (508)
T TIGR02262 143 AELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNA 221 (508)
T ss_pred HHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHH
Confidence 444432222 11223445789999999999999999999999999887765 3445678899999999999999998654
Q ss_pred -HHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 316 -VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 316 -~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
+.++..|+++++.+ .++..+++.|++++||+++++|.++..+.+...
T Consensus 222 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~------------------------------ 271 (508)
T TIGR02262 222 LTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN------------------------------ 271 (508)
T ss_pred HHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc------------------------------
Confidence 45788999998876 579999999999999999999998877654100
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCe
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ 472 (615)
.+...+.++|.+++||+++++++.+.|++.+|+++++.||+||++.+.+.....+...+++|.|++++
T Consensus 272 ------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~ 339 (508)
T TIGR02262 272 ------------LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGY 339 (508)
T ss_pred ------------ccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCc
Confidence 00011258999999999999999999999999999999999999876554444445567899999999
Q ss_pred eEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 007169 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (615)
Q Consensus 473 ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (615)
+++|+| +++..++.|. .|||+++|+.++.||+++++.+++.| .+|||+|||+++++++|.++++||.||+||+ +
T Consensus 340 ~v~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~-~ 413 (508)
T TIGR02262 340 RLRLVG-DGGQDVAAGE---PGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKV-S 413 (508)
T ss_pred EEEEEC-CCCCCCCCCC---eeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeee-C
Confidence 999999 7777777776 89999999999999999999999998 6899999999999999999999999999997 7
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
|++|+|.+||+.+.++|+|.++++++.++. ..+++++++.+ +++.++++++
T Consensus 414 G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~ 476 (508)
T TIGR02262 414 GIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDR 476 (508)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHh
Confidence 999999999999999999999999996543 46778887632 4566677664
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=511.33 Aligned_cols=446 Identities=21% Similarity=0.287 Sum_probs=359.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...++.++|.+.+. ++++++.+. + +++||.||.+++.++|++|.++ |++++++|+++++|+++|++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 45688999988775 788888653 2 3699999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|++++|+++.++.+++.+++++++++++|++....+.+.... +.+. ++.++. ..
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~----------------~~ 131 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDS----------------PA 131 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEecc----------------cc
Confidence 999999999999999999999999999999999999987766544332 2222 222221 12
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
|.+++..............++++++|+|||||||.||||++||+++..........+++.++|++++.+|++|.+++...
T Consensus 132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~ 211 (529)
T PRK07867 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAG 211 (529)
T ss_pred HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHH
Confidence 44443322111122234567899999999999999999999999999888877777888899999999999999998764
Q ss_pred H-HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 316 V-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 316 ~-~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+ .++..|+++++.+ .++..+++.++++++|++.++|+.+..++..... .
T Consensus 212 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~-----------------------------~ 262 (529)
T PRK07867 212 WAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER-----------------------------P 262 (529)
T ss_pred HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc-----------------------------c
Confidence 4 5788999998876 7899999999999999999999998877542000 0
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCee
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~e 473 (615)
....+++|. ++||+++++.. ..+.+.+|+++++.||+||++...+... ....+++|.|+++
T Consensus 263 -------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~-- 323 (529)
T PRK07867 263 -------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG-- 323 (529)
T ss_pred -------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCCCCC--
Confidence 000136774 56888888775 5566677999999999999976544322 2345789999999
Q ss_pred EEEeecCCCCCCCCCCC---------CCcceEEE-ecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 474 IKLVDVPEMNYTSEDQP---------CPRGEICV-RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 474 v~ivd~~~~~~~~~~~~---------~~~GEi~v-rg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++++|++++..++.+.. ...|||++ +|++++.||+++++.+.+.| .+|||+|||+|+++++|++++.||
T Consensus 324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR 402 (529)
T PRK07867 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR 402 (529)
T ss_pred EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEecc
Confidence 77888655555554430 01699999 99999999999999999999 689999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
+||+||+ +|++|+|.+||+++.++|+|.+++|+|.+++ +.++++|++ ++++++++++++
T Consensus 403 ~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 470 (529)
T PRK07867 403 LGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQ 470 (529)
T ss_pred ccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 9999997 8999999999999999999999999998764 478888875 457888888764
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=615.36 Aligned_cols=443 Identities=20% Similarity=0.252 Sum_probs=376.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++.++|++.++++||++|+.+. +. .+||+||+++++++|+.|.+.|+++|++|+|+++|+++++++++
T Consensus 3093 ~~~~~~~l~~~~a~~~p~~~Av~~~---~~------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~l 3163 (3956)
T PRK12467 3093 SERLVHQLIEAQVARTPEAPALVFG---DQ------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALL 3163 (3956)
T ss_pred ccccHHHHHHHHHHhCCCcceEeeC---Cc------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHH
Confidence 4479999999999999999999875 33 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|+++|||++.++.+++.++++++++++++++....+.+... ... .++.++..
T Consensus 3164 avl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~~~-~~~~~~~~------------------ 3220 (3956)
T PRK12467 3164 AVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----AGD-TALTLDRL------------------ 3220 (3956)
T ss_pred HHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----cCC-ceeeecch------------------
Confidence 9999999999999999999999999999999999987654432111 111 12222211
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
.........+.....++++++|+|||||||.||||+++|+++++.+.+....++++++|+++.+.|++|..+....+
T Consensus 3221 ---~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 3297 (3956)
T PRK12467 3221 ---DLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFL 3297 (3956)
T ss_pred ---hhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHH
Confidence 00011111222345789999999999999999999999999999999888888999999999999999999988888
Q ss_pred HHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 317 MTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 317 ~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+|+.|+++++.+ .++..+++.|+++++|++.++|++++.+.+...
T Consensus 3298 ~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------------- 3346 (3956)
T PRK12467 3298 WTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------------- 3346 (3956)
T ss_pred HHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc-------------------------------
Confidence 9999999999986 588999999999999999999999988865210
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-C----CCCCCcCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-D----NLSGHVGS 467 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-~----~~~~~vG~ 467 (615)
....++||.+++||+++++++.+.+++.+ ++.++++||+||++..++..... + ....++|+
T Consensus 3347 -------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~ 3413 (3956)
T PRK12467 3347 -------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGR 3413 (3956)
T ss_pred -------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCcc
Confidence 00114799999999999999999998877 57899999999998766543221 1 23468999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCC-------eeecccEEEEecCCcEEE
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG-------WFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~g-------w~~TGDlg~~~~dG~l~i 540 (615)
|++|++++|+| ++++.++.|. .|||+|+|+++++||+|+|+.|+++|..++ ||+|||+|++++||+|+|
T Consensus 3414 p~~~~~~~v~d-~~~~~vp~G~---~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~ 3489 (3956)
T PRK12467 3414 PVAGRSIYVLD-GQLNPVPVGV---AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEY 3489 (3956)
T ss_pred ccCCCEEEEEC-CCCCCCCCCC---CceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEE
Confidence 99999999999 6678888887 899999999999999999999999996554 699999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeCH------HHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~------~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|.|||++|.++|+|.+|+|++... ++.++|+|+++. ++++++++++
T Consensus 3490 ~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~ 3559 (3956)
T PRK12467 3490 LGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPADPQGDWRETLRDHLAAS 3559 (3956)
T ss_pred eccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCCCCCcccHHHHHHHHhcc
Confidence 9999999998 899999999999999999999999998653 368999999754 5777887764
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=511.94 Aligned_cols=454 Identities=25% Similarity=0.357 Sum_probs=377.1
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
+..|+.++|.+.++++|+++|+.+. + +.+||.||.+++.++|..|.+.|+++|++|+++++|+++|+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l 80 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3468999999999999999999764 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEccc-chHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
||+++|++++|+++.++.+++.++++.++++.++++.. ....+.......+.+..++.++....
T Consensus 81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 145 (524)
T PRK06188 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD--------------- 145 (524)
T ss_pred HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc---------------
Confidence 99999999999999999999999999999999999876 44444444444455566665543210
Q ss_pred HHHHHhcCc--cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 236 YSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 236 ~~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
+.++..... ..........++++++|+|||||||.||+|++||+++...+......+++..+|++++.+|++|.+++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 225 (524)
T PRK06188 146 GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF 225 (524)
T ss_pred hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH
Confidence 111111110 001111223456799999999999999999999999999888877778889999999999999998874
Q ss_pred HHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 314 ~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.+.+++.|+++++.+ .++..+++.++++++|+++++|+++..+++....
T Consensus 226 -~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------------- 275 (524)
T PRK06188 226 -FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL----------------------------- 275 (524)
T ss_pred -HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc-----------------------------
Confidence 466788999999987 7899999999999999999999999988762100
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC------CCCCCcC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD------NLSGHVG 466 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~------~~~~~vG 466 (615)
......++|.+++||++++++....+.+.+++.+++.||+||++..++.....+ ...+++|
T Consensus 276 -------------~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G 342 (524)
T PRK06188 276 -------------RTRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCG 342 (524)
T ss_pred -------------cCCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccc
Confidence 000114899999999999999988888888999999999999975554433221 3467899
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
+|+++++++|+| +++..++.|. .|||+++|+.++.||+++++.+.+.| .+|||+|||+|++++||.+++.||.+|
T Consensus 343 ~p~~g~~v~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~ 417 (524)
T PRK06188 343 RPTPGLRVALLD-EDGREVAQGE---VGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKD 417 (524)
T ss_pred cccCCcEEEEEc-CCCCCCCCCC---eeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEecccc
Confidence 999999999999 4567777776 89999999999999999999999998 789999999999999999999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHc
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~ 603 (615)
+|++ +|++|+|++||+++.++++|.+++|++.+++ +.++++|++++ +++.++++++
T Consensus 418 ~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 482 (524)
T PRK06188 418 MIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKER 482 (524)
T ss_pred ceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 9996 8999999999999999999999999997754 47888888643 5788888765
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=512.92 Aligned_cols=467 Identities=22% Similarity=0.285 Sum_probs=375.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..|+.++|+++++++||++++... .++ ..+++||+||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~---~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la 83 (542)
T PRK06018 9 PLLCHRIIDHAARIHGNREVVTRS--VEG---PIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYG 83 (542)
T ss_pred CCCHHHHHHHHHHhCCCceEEEee--ccC---CceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHH
Confidence 469999999999999999999753 122 356799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.++++.+++++++++....+.+.+.....+.++.++.+.+... ... ........|.
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~ 159 (542)
T PRK06018 84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH-MPQ---TTLKNAVAYE 159 (542)
T ss_pred HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc-ccc---cCccccccHH
Confidence 999999999999999999999999999999999999888777776666666666665543211 000 0111234566
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHH-HHH-HhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI-ASV-AGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~-~~~-~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
++...... ........++++++|+|||||||.||||++||++++ ... ......+++..+|+++..+|++|.+++...
T Consensus 160 ~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~ 238 (542)
T PRK06018 160 EWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIA 238 (542)
T ss_pred HHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHH
Confidence 66543221 112233466889999999999999999999999743 222 223345678899999999999999998877
Q ss_pred HHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 316 VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 316 ~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+.++..|+++++.. .++..+++.++++++|++.++|+++..+.+......
T Consensus 239 ~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------- 290 (542)
T PRK06018 239 FSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG---------------------------- 290 (542)
T ss_pred HhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC----------------------------
Confidence 77889999998864 688999999999999999999999998875321100
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLS 462 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~ 462 (615)
...+++|.+++||+++++++.++|++ +++++++.||+||++.+.+...... ...
T Consensus 291 --------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (542)
T PRK06018 291 --------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVL 355 (542)
T ss_pred --------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhcc
Confidence 00148999999999999999999999 8999999999999986554321110 123
Q ss_pred CCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 007169 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 463 ~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
.++|+|.++++++|+| +++..++.+.. ..|||+++|++++.|||++ +.+.++.+|||+|||+|+++++|++++.|
T Consensus 356 ~~~G~~~~g~~i~v~d-~~~~~~~~~~~-~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~G 430 (542)
T PRK06018 356 QKQGYPPFGVEMKITD-DAGKELPWDGK-TFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITD 430 (542)
T ss_pred ccCCCCCCCcEEEEEC-CCCCCCCCCCC-ceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEe
Confidence 5789999999999999 45555544311 2799999999999999983 34556679999999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|.+|+|++ +|++|+|.+||+++.++|+|.+++|+|.++. +.++++|++. .+++.++++++
T Consensus 431 R~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 499 (542)
T PRK06018 431 RSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGK 499 (542)
T ss_pred cCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 99999995 9999999999999999999999999997754 4677888753 46788888764
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=514.09 Aligned_cols=444 Identities=22% Similarity=0.274 Sum_probs=352.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHhHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv-~~gd~V~i~~~n~~e~~~~~lA 157 (615)
.|+.++|.+++ .|+++|+.+. + ..+||.||.++++++|.+|.+.|+ ++||+|+++++|+++|+++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 47888887754 7999999753 2 259999999999999999999999 7999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+.. .+.++.+ .++. ..+.
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i-~~~~----------------~~~~ 132 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVL-DVDT----------------PAYA 132 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEE-Eccc----------------hhhh
Confidence 9999999999999999999999999999999999887766554431 2333333 3221 1133
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH-
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV- 316 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~- 316 (615)
+++..... ..+.....++++++++|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++...+
T Consensus 133 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 211 (540)
T PRK13388 133 ELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWA 211 (540)
T ss_pred hhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHH
Confidence 33321111 1122235679999999999999999999999999998887777778899999999999999999887654
Q ss_pred HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
.++..|+++++.+ .++..+++.++++++|++..+|..+..+..... . . .
T Consensus 212 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~----~-------------------------~-~ 261 (540)
T PRK13388 212 PAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE----R-------------------------P-D 261 (540)
T ss_pred HHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC----C-------------------------c-c
Confidence 4788999998876 789999999999999999999999887754200 0 0 0
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEE
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ 475 (615)
....+++.+ + |++++++..+.+.+.+++++++.||+||++.++... .....+++|+|++++++
T Consensus 262 ------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~~~~~~vG~p~~g~~i- 324 (540)
T PRK13388 262 ------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVRE--PGTPPGSIGRGAPGVAI- 324 (540)
T ss_pred ------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecC--CCCCCCCCCCCCCCcEE-
Confidence 001356643 3 556778888888888899999999999998655432 23456789999999765
Q ss_pred EeecCCCCCC------CCCCC----CCcceEEEe-cCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC
Q 007169 476 LVDVPEMNYT------SEDQP----CPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (615)
Q Consensus 476 ivd~~~~~~~------~~~~~----~~~GEi~vr-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (615)
++++....+ ..|.. ...|||+++ |++++.||+++|+.|++.| .+|||+|||+|++|+||++++.||+
T Consensus 325 -~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~ 402 (540)
T PRK13388 325 -YNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRT 402 (540)
T ss_pred -EcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccC
Confidence 332221111 11111 137999999 9999999999999999999 6899999999999999999999999
Q ss_pred CCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
||+||+ +|++|+|.+||+++.++|+|.+|+|+|.+++ +.++++|++. .++++++++.+
T Consensus 403 ~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~ 469 (540)
T PRK13388 403 ADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQ 469 (540)
T ss_pred CceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhh
Confidence 999997 8999999999999999999999999998754 4667777653 46788888764
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-59 Score=506.94 Aligned_cols=432 Identities=20% Similarity=0.278 Sum_probs=351.8
Q ss_pred HHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 007169 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (615)
Q Consensus 86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (615)
+.+++.+||++|+... .++ +.+||+||.+++.++|.+|.+.|+++||+|+|+++|+++|+++++||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 3456789999998652 122 359999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCcc
Q 007169 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (615)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (615)
+|+++.++.+++.+++++++++++|++....... . ....++++......
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~------~-------------------------~~~~~~~~~~~~~~ 123 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR------T-------------------------DVEDLAAFIASADA 123 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc------c-------------------------cccchhhhhhhccc
Confidence 9999999999999999999999999976432210 0 00112222111111
Q ss_pred -CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH-HHHHhCc
Q 007169 246 -NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV-MTVYSGV 323 (615)
Q Consensus 246 -~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~-~~l~~G~ 323 (615)
.........++++++++|||||||.||+|++||+++...+........+..+|++++.+|++|.+++...+ .++..|+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 01112234568899999999999999999999999988777666666678899999999999999987644 5788899
Q ss_pred EEEEec-CChHHHHHHHH--hhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 007169 324 AVGFYQ-GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (615)
Q Consensus 324 ~i~~~~-~~~~~l~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 400 (615)
++++.+ .++...+..+. ++++|+++++|+++..+.+... .+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~----------------------------------~~-- 247 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG----------------------------------FD-- 247 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC----------------------------------cC--
Confidence 998876 67888888885 4899999999999987764200 00
Q ss_pred hHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC---CCCCCCcCCCCCCeeEEEe
Q 007169 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG---DNLSGHVGSPNAACEIKLV 477 (615)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~ev~iv 477 (615)
....+++|.+++||++++.+..+.+... |+++++.||+||++++....... ....+++|.|.++++++|+
T Consensus 248 ------~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~ 320 (488)
T PRK09088 248 ------AAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVV 320 (488)
T ss_pred ------ccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEE
Confidence 0001489999999999999988877764 89999999999998654322111 2356889999999999999
Q ss_pred ecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeec
Q 007169 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557 (615)
Q Consensus 478 d~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~ 557 (615)
| +++..++.|. .|||+|+|++++.||+++++.|++.|+.+|||+|||+|++|++|.++|.||+||+||+ +|++|+
T Consensus 321 d-~~~~~~~~g~---~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~-~G~~i~ 395 (488)
T PRK09088 321 D-DQGNDCPAGV---PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFIS-GGENVY 395 (488)
T ss_pred C-CCCCCCcCCC---ceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEe-CCEEEC
Confidence 9 5566677776 8999999999999999999999999988999999999999999999999999999996 899999
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|++||++|.++|+|.+++|++.+++ +..+++|+++ .+++.++++++
T Consensus 396 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 450 (488)
T PRK09088 396 PAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTR 450 (488)
T ss_pred HHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999997753 4677888863 46678888764
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=509.98 Aligned_cols=469 Identities=23% Similarity=0.316 Sum_probs=372.3
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..++.++|++.++.+|+++|+.+. + +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 102 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFG 102 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 368999999999999999999764 3 2599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCC--CCCCCCcC-----CC
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD--QIPSLPIT-----TG 230 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~--~~~~~~~~-----~~ 230 (615)
|+++|++++|++|.++.+++.++++++++++++++....+.+.+..... .++.++..+..+. ........ ..
T Consensus 103 ~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T PRK06178 103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181 (567)
T ss_pred HHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEecccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998877776655443 3444444332110 00000000 00
Q ss_pred ceEeeHHHHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc-CcccCCCcEEEEcCChH
Q 007169 231 VQILTYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307 (615)
Q Consensus 231 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-~~~~~~~d~~l~~lPl~ 307 (615)
.....+.++...... .........++++++|+|||||||.||||++||++++..+..... ...+.++|++++++|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 261 (567)
T PRK06178 182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEF 261 (567)
T ss_pred ccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchH
Confidence 001112222221111 111223356789999999999999999999999998876554432 25678899999999999
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 007169 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (615)
Q Consensus 308 h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (615)
|++++.. .+.+++.|+++++.+ .++..+++.++++++|.+.++|..+..+.....
T Consensus 262 ~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~----------------------- 318 (567)
T PRK06178 262 WIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR----------------------- 318 (567)
T ss_pred HHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----------------------
Confidence 9999864 566899999999987 789999999999999999999998877654100
Q ss_pred HHhcCCCCCchhhHHhHHHHHhhcCCcEEEEE--EcCCCCcHHHHHHHHHHhCCcccc-ccccccccccccccCC---C-
Q 007169 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMG--SGASPLSPDVLDFLKICFGGRVTE-GYGMTETSCLISQLDE---G- 458 (615)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~--~gg~~l~~~~~~~~~~~~g~~v~~-~YG~TE~~~~~~~~~~---~- 458 (615)
.......+++.+. +.++++++++.+.++..+|..++. .||+||++..+..... .
T Consensus 319 -------------------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~ 379 (567)
T PRK06178 319 -------------------FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD 379 (567)
T ss_pred -------------------CCCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc
Confidence 0000013566554 345899999999999988887775 7999998765433211 1
Q ss_pred ---CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC
Q 007169 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (615)
Q Consensus 459 ---~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d 535 (615)
....+++|.|+||++++|+|+++++.++.|+ .|||+++|++++.|||++++.+++.| .+|||+|||+|++++|
T Consensus 380 ~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~---~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~ 455 (567)
T PRK06178 380 FDLLSQPVFVGLPVPGTEFKICDFETGELLPLGA---EGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQ 455 (567)
T ss_pred cccccCCcccccccCCcEEEEEcCCCCCcCCCCC---ceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecC
Confidence 1345679999999999999977788888887 89999999999999999999999988 6899999999999999
Q ss_pred CcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 536 G~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|+++|+||+||+||+ +|++|+|.+||+++.++|+|.+++|+|.+++ +.++++|+++ ++++.++++++
T Consensus 456 g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 531 (567)
T PRK06178 456 GFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCREN 531 (567)
T ss_pred CeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhc
Confidence 999999999999997 8999999999999999999999999997654 5788888863 56788888864
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=506.53 Aligned_cols=469 Identities=25% Similarity=0.355 Sum_probs=369.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|.+.++.+|+++|+.+. + +.+||.||.++++++|.+|.+.|+++||+|+++++|+++|+++++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4569999999999999999999763 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc--hHHHHhhhccCCCceEEEEECCCCC-CCC-CC-CcCCCc
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT--LNSLLSCLSEVPTVRLIVVIGGIDD-QIP-SL-PITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~--~~~l~~~~~~~~~l~~ii~~~~~~~-~~~-~~-~~~~~~ 231 (615)
||+++|++++|+++.++.+++.+++++++++.+|++... .+.+.+.... ..+..+++++.... ... .. ......
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADP 168 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCc
Confidence 999999999999999999999999999999999998631 1222221111 11334444433110 000 00 001112
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc-----CcccCCCcEEEEcCCh
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-----GTKFYPSDVYISYLPL 306 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~lPl 306 (615)
...+++++...... ........++++++++|||||||.||||+++|+++......... .......+++++.+|+
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 247 (541)
T TIGR03205 169 RIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPL 247 (541)
T ss_pred ccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccH
Confidence 34567777653222 12223456789999999999999999999999998765442211 1122345799999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
+|.+++.. .+.++..|+++.+.. .++..+++.|+++++|++.++|+++..+.+...
T Consensus 248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 305 (541)
T TIGR03205 248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS---------------------- 305 (541)
T ss_pred HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc----------------------
Confidence 99999876 455788999988876 799999999999999999999999988754100
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSG 463 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~ 463 (615)
.+.....++|.+++||+++++++.+++++.++.++++.||+||++..++..... ....+
T Consensus 306 --------------------~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 365 (541)
T TIGR03205 306 --------------------LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPG 365 (541)
T ss_pred --------------------ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCC
Confidence 000011489999999999999999999988899999999999998766544322 23467
Q ss_pred CcCCCCCCeeEEEeec-CCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 007169 464 HVGSPNAACEIKLVDV-PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~-~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
++|.|+++++++|++. ++++.++.|. .|||+++|++++.||+++|+.|++.| .++||+|||++++++||+++++|
T Consensus 366 ~~G~~~~~~~~~v~~~d~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~G 441 (541)
T TIGR03205 366 SIGLMLPGIELDVVSLDDPTKVLPPGE---VGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVD 441 (541)
T ss_pred CcceeccCceeEEEecCCCCccCCCCC---eeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEc
Confidence 8999999999998764 3445566565 89999999999999999999999999 58999999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-------HHHHHHHHHHc
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-------QDALKAWAASE 603 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-------~~~l~~~~~~~ 603 (615)
|.||+||+ +|++|+|.+||+++.++++|.+++|+|.+++ +.++++|+++ .+++.++++++
T Consensus 442 R~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~ 511 (541)
T TIGR03205 442 RKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGK 511 (541)
T ss_pred cccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhh
Confidence 99999996 8999999999999999999999999997654 4688888753 35677777663
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=563.35 Aligned_cols=444 Identities=18% Similarity=0.220 Sum_probs=370.7
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..++.++|.+.++++|+++|+.+. + +.+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++|
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 368999999999999999999764 3 2499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.++++++++++++++......+.. .+.+. ++. ++
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~-~~~---------------------~~ 581 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLT-SLC---------------------YN 581 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCce-eee---------------------cc
Confidence 99999999999999999999999999999999998765543321 11111 111 11
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
+...... ..+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++..|++|..++...+.
T Consensus 582 ~~~~~~~--~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 659 (1296)
T PRK10252 582 APLAPQG--AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW 659 (1296)
T ss_pred ccccccc--CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHH
Confidence 1100000 11112236789999999999999999999999999999988888889999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+++.|+++++.+ .++..+.+.++++++|++.++|+++..+.+......
T Consensus 660 ~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~---------------------------- 711 (1296)
T PRK10252 660 PFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG---------------------------- 711 (1296)
T ss_pred HHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc----------------------------
Confidence 999999999875 588999999999999999999999988765311100
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-------CCCCCCcC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-------DNLSGHVG 466 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-------~~~~~~vG 466 (615)
.. ....++|.+++||+++++++.+.|++.+++++++.||+||++..++..... .....++|
T Consensus 712 -----------~~-~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG 779 (1296)
T PRK10252 712 -----------AR-QSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIG 779 (1296)
T ss_pred -----------cc-ccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcc
Confidence 00 001489999999999999999999988899999999999998655543221 12346799
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC------CCeeecccEEEEecCCcEEE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i 540 (615)
+|+++++++|+| +.++.++.|. .|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|++
T Consensus 780 ~p~~~~~~~i~d-~~~~~~~~g~---~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~ 855 (1296)
T PRK10252 780 YPVWNTGLRILD-ARMRPVPPGV---AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEY 855 (1296)
T ss_pred cccCCCEEEEEC-CCCCCCCCCC---ceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEE
Confidence 999999999999 6778888887 8999999999999999999999999854 34999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeC---------CCCeEEEEEEeC------HHHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS---------FNSALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~---------~~~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.. ....++|+|++. .++++++++++
T Consensus 856 ~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~ 932 (1296)
T PRK10252 856 LGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRER 932 (1296)
T ss_pred ecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhh
Confidence 9999999997 89999999999999999999999877531 113799999974 46788888754
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=510.45 Aligned_cols=469 Identities=25% Similarity=0.357 Sum_probs=372.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..++.++|.+.++++|+++|++.. + +.+||+||.+++.++|..|. +.|+++||+|+++++|+++++++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF---G------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC---C------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 35999999999999999997 6899999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCC-CC-------------
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QI------------- 222 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~-~~------------- 222 (615)
||+++|++++|++|.++.+++.++++++++++++++......+.......+ ...++.++.... ..
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYV 173 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhh
Confidence 999999999999999999999999999999999999877666655544433 333443321000 00
Q ss_pred CC-CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcc----cCC-
Q 007169 223 PS-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYP- 296 (615)
Q Consensus 223 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~----~~~- 296 (615)
.. ...........+.+....+.....+.....++++++++|||||||.||||++||+++...+......+. +.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~ 253 (560)
T PRK08751 174 KKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEG 253 (560)
T ss_pred hccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCC
Confidence 00 000000112345555544332222233456789999999999999999999999999887765444332 333
Q ss_pred CcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHH
Q 007169 297 SDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373 (615)
Q Consensus 297 ~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 373 (615)
++++++.+|++|.+++.. .+.++..|++.++.. .++..+++.++++++|++.++|.++..+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----------- 322 (560)
T PRK08751 254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG----------- 322 (560)
T ss_pred CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC-----------
Confidence 367889999999999865 345677777776654 688999999999999999999999988765200
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccccc
Q 007169 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS 453 (615)
Q Consensus 374 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~ 453 (615)
.+...+ +++|.+++||+++++++.+.+++.+|+++++.||+||+++.++
T Consensus 323 -----------------------~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 371 (560)
T PRK08751 323 -----------------------FDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAAC 371 (560)
T ss_pred -----------------------cCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCcee
Confidence 000001 4899999999999999999999988999999999999987655
Q ss_pred ccCCC-CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEE
Q 007169 454 QLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532 (615)
Q Consensus 454 ~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~ 532 (615)
..... ....+++|.|+++++++++| +++..++.|. .|||+++|+.++.||+++++.|++.|+.+|||+|||+|++
T Consensus 372 ~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~ 447 (560)
T PRK08751 372 INPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGE---IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM 447 (560)
T ss_pred cccccccccCCCcCccCCCceEEEEC-CCCCCCCCCC---ceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence 43321 24457899999999999999 6677777776 8999999999999999999999999988999999999999
Q ss_pred ecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHc
Q 007169 533 IPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASE 603 (615)
Q Consensus 533 ~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~ 603 (615)
|++|++++.||.+|+||+ +|++|+|.+||+++.++|+|.+++|+|.++. +.++++++. +.+++.++++++
T Consensus 448 ~~~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~ 525 (560)
T PRK08751 448 DEQGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAHARAN 525 (560)
T ss_pred cCCceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHHHHHHh
Confidence 999999999999999997 8999999999999999999999999997754 356676664 345677777654
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=504.36 Aligned_cols=440 Identities=20% Similarity=0.220 Sum_probs=356.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++.+.|.+.++++||++|+.+. ++ .+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~~------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---DG------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---CC------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999753 22 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++.++++....+.+.... ..++.++...
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~----------------- 160 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD------DAVAVIDPAT----------------- 160 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh------cceEEeccch-----------------
Confidence 99999999999999999999999999999999999887665544321 1122222110
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHH--HHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~--~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
...... ...+...++.++|+|||||||.||||++||+.... .........++.++|++++.+|++|.+++..
T Consensus 161 ~~~~~~------~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~ 234 (516)
T PRK13383 161 AGAEES------GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM 234 (516)
T ss_pred hhhhcC------CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH
Confidence 000000 01112345678999999999999999999984321 1112223456788999999999999999987
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.++..|+++++.. .++..+++.++++++|.+.++|.++..+.+..... +.
T Consensus 235 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------~~---- 287 (516)
T PRK13383 235 LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRV-----------------------RA---- 287 (516)
T ss_pred HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccc-----------------------cc----
Confidence 778899999998766 79999999999999999999999998886521100 00
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCe
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAAC 472 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ 472 (615)
.....++|.+++||+++++++.+.|.+.+++.+++.||+||++..+...... ....+++|.|++++
T Consensus 288 -------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~ 354 (516)
T PRK13383 288 -------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGC 354 (516)
T ss_pred -------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCc
Confidence 0001489999999999999999999999999999999999998654433222 24567899999999
Q ss_pred eEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCC
Q 007169 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQ 552 (615)
Q Consensus 473 ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~ 552 (615)
+++|+| ++++.++.|. .|||+++|+.++.||++++. +.+ .+|||+|||+|++|++|+++++||+||+||+ +
T Consensus 355 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~-~ 425 (516)
T PRK13383 355 PVRILD-RNNRPVGPRV---TGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIIS-G 425 (516)
T ss_pred EEEEEC-CCCCCCCCCC---ceEEEEecCcccccccCCch---hhe-ecCceecceeEEEcCCccEEEeccccceEEE-C
Confidence 999999 5566666665 89999999999999998764 223 5899999999999999999999999999997 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|++|+|.+||++|.++|.|.+++|++.++. +.++++|+++ .++++++++++
T Consensus 426 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 485 (516)
T PRK13383 426 GENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDR 485 (516)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999996643 5788888864 46778888764
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=500.28 Aligned_cols=418 Identities=26% Similarity=0.324 Sum_probs=346.5
Q ss_pred HHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEec
Q 007169 89 VDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168 (615)
Q Consensus 89 a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl 168 (615)
..+.++++|+.+. + +.+||+||.++++++|..|. ++|+|+++++|+++|+++++||+++|++++|+
T Consensus 10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l 75 (471)
T PRK07787 10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV 75 (471)
T ss_pred hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 4456888888653 2 35999999999999999996 57999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCC
Q 007169 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248 (615)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (615)
++..+.+++.+++++++++.++++.+.. ...++.+. .... ...+ .
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~---~~~~---------------~~~~-----------~ 120 (471)
T PRK07787 76 PPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVP---VRLH---------------ARSW-----------H 120 (471)
T ss_pred CCCCChHHHHHHHHhcCCCEEEecCCcc------ccccccee---eecc---------------cccc-----------c
Confidence 9999999999999999999999976311 01111111 0000 0000 0
Q ss_pred CCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEE
Q 007169 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGF 327 (615)
Q Consensus 249 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~ 327 (615)
......++|+++|+|||||||.||||+++|+++...+......+.+.++|++++.+|++|.+++.. .+.+++.|+++++
T Consensus 121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~ 200 (471)
T PRK07787 121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVH 200 (471)
T ss_pred cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEe
Confidence 111245789999999999999999999999999998877777778889999999999999999886 5568999999988
Q ss_pred ec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHH
Q 007169 328 YQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406 (615)
Q Consensus 328 ~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 406 (615)
.+ .++..+++.++ +++|++.++|.++..+.+.... .
T Consensus 201 ~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------------~ 237 (471)
T PRK07787 201 TGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA------------------------------------------A 237 (471)
T ss_pred cCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc------------------------------------------c
Confidence 76 78999999999 9999999999999888752000 0
Q ss_pred hhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCC
Q 007169 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (615)
Q Consensus 407 ~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~ 486 (615)
. ...++|.+++||+++++++.+++++.++.++++.||+||++...+.........+++|.|+++++++|+|.+ +..++
T Consensus 238 ~-~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~-~~~~~ 315 (471)
T PRK07787 238 R-ALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDED-GGPVP 315 (471)
T ss_pred c-cccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCC-CCCCC
Confidence 0 014899999999999999999999989999999999999986554443334456789999999999999944 45554
Q ss_pred C-CCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC-CCeEEcCCeeeechHHHHHH
Q 007169 487 E-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQGEYIAAEKIENV 564 (615)
Q Consensus 487 ~-~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~~G~~v~p~~IE~~ 564 (615)
. ++ ..|||+++|++++.||+++++.|++.|..+|||+|||+|++|+||+++++||+ |+++|. +|++|+|.+||++
T Consensus 316 ~~~~--~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~ 392 (471)
T PRK07787 316 HDGE--TVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKS-GGYRIGAGEIETA 392 (471)
T ss_pred CCCC--CceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEee-CCEEECHHHHHHH
Confidence 2 32 27999999999999999999999999988999999999999999999999996 899995 8999999999999
Q ss_pred HhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHc
Q 007169 565 YAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASE 603 (615)
Q Consensus 565 l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~ 603 (615)
+.++|.|.+++|++.++. +.++|+|++ +++++.++++++
T Consensus 393 l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~l~~~ 438 (471)
T PRK07787 393 LLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELIDFVAQQ 438 (471)
T ss_pred HHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHHHHHHhh
Confidence 999999999999998754 578999986 557788888763
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=611.96 Aligned_cols=444 Identities=20% Similarity=0.219 Sum_probs=376.2
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...++.++|.+.++++||++|+.+. + +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++
T Consensus 509 ~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~l 579 (5163)
T PRK12316 509 LQRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALL 579 (5163)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3568999999999999999999764 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|+++||+++.++.+++.++++++++++++++......+. ..... .++.++...
T Consensus 580 a~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~----------------- 637 (5163)
T PRK12316 580 AILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLP----LAAGV-QVLDLDRPA----------------- 637 (5163)
T ss_pred HHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCC----cccCc-eEEEecCcc-----------------
Confidence 99999999999999999999999999999999999876543321 11112 223332210
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
..... .....+.....++++++|+|||||||.||||+++|+++++.+.+....+++.++|++++.+|++|.+++...+
T Consensus 638 -~~~~~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~ 715 (5163)
T PRK12316 638 -AWLEG-YSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFF 715 (5163)
T ss_pred -hhhcc-CCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHH
Confidence 00000 0111222345688999999999999999999999999999999888888999999999999999999998888
Q ss_pred HHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 317 ~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+....
T Consensus 716 ~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------------- 766 (5163)
T PRK12316 716 WPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV----------------------------- 766 (5163)
T ss_pred HHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc-----------------------------
Confidence 9999999999974 6899999999999999999999999988642000
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccC--CCCCCCCCcCCCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD--EGDNLSGHVGSPN 469 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~ 469 (615)
....++|.+++||+++++++.+.+.+.+ +++++|.||+||++..++... .......++|+|+
T Consensus 767 ---------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~ 831 (5163)
T PRK12316 767 ---------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPI 831 (5163)
T ss_pred ---------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCcccc
Confidence 0014899999999999999999987665 789999999999985443322 2234567899999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEcc
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|. .++||+|||+|++++||.|+|+||
T Consensus 832 ~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR 907 (5163)
T PRK12316 832 ANLACYILD-ANLEPVPVGV---LGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGR 907 (5163)
T ss_pred CCCEEEEEC-CCCCCCCCCC---ceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecc
Confidence 999999999 5677888887 899999999999999999999999883 346999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCH------HHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~------~~l~~~~~~~ 603 (615)
+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+ ++.++|+|++++ ++++++++++
T Consensus 908 ~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~-~~~lva~vv~~~~~~~~~~~l~~~l~~~ 971 (5163)
T PRK12316 908 IDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVD-GKQLVGYVVLESEGGDWREALKAHLAAS 971 (5163)
T ss_pred cCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcC-CCeEEEEEEccCCCCCCHHHHHHHHHhh
Confidence 9999997 89999999999999999999999999998 778999999754 6788998875
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=507.81 Aligned_cols=469 Identities=22% Similarity=0.326 Sum_probs=366.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..+++.++|.+.++.+|+++|+.+. + +.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3468999999999999999999764 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCC-CCCCC-----CCcC--
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID-DQIPS-----LPIT-- 228 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~-~~~~~-----~~~~-- 228 (615)
||+++|++++|++|.++.+++.++++.+++++++++......+...... .....++...... ..... ....
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQ 171 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEeccccccccccccccchhhccc
Confidence 9999999999999999999999999999999999988655544332211 1122222211000 00000 0000
Q ss_pred --------CCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc-Cccc-CCCc
Q 007169 229 --------TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKF-YPSD 298 (615)
Q Consensus 229 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-~~~~-~~~d 298 (615)
.......|+.+.... ..........++++++++|||||||.||||++||++++........ .+.. ..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 250 (563)
T PRK06710 172 SNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEE 250 (563)
T ss_pred ccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCc
Confidence 000001122222111 1011111123578999999999999999999999999765433222 2333 3456
Q ss_pred EEEEcCChHHHHHHHHH-HHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHH
Q 007169 299 VYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376 (615)
Q Consensus 299 ~~l~~lPl~h~~~~~~~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 376 (615)
++++++|++|.+++... +.+++.|+++++.+ .++..+++.++++++|++.++|+++..+......
T Consensus 251 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------- 317 (563)
T PRK06710 251 VVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLL------------- 317 (563)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcc-------------
Confidence 88999999999998654 45788999998876 6899999999999999999999999887642000
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccC
Q 007169 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (615)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~ 456 (615)
+....+++|.+++||+++++++.+++++.+++++++.||+||++.......
T Consensus 318 -----------------------------~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 368 (563)
T PRK06710 318 -----------------------------KEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF 368 (563)
T ss_pred -----------------------------ccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence 000014799999999999999999999989999999999999987554332
Q ss_pred C-CCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC
Q 007169 457 E-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (615)
Q Consensus 457 ~-~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d 535 (615)
. .....+++|.|.++++++++|++++..++.|. .|||+++|+.++.||+++++.+.+.| .+|||+|||+|+++++
T Consensus 369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~ 444 (563)
T PRK06710 369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE---IGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDED 444 (563)
T ss_pred ccccccCCccCCCCCCCeEEEEECCCCccCCCCC---ceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCC
Confidence 2 22345789999999999999977778888886 89999999999999999999999988 6899999999999999
Q ss_pred CcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 536 GRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 536 G~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|.++++||.||+||+ +|++|+|.+||+++.++|.|.+++|++.++. +.++++|++. ++++.++++++
T Consensus 445 g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~ 520 (563)
T PRK06710 445 GFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKY 520 (563)
T ss_pred CcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHh
Confidence 999999999999997 8999999999999999999999999997653 5788888853 46777887753
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-58 Score=511.54 Aligned_cols=456 Identities=23% Similarity=0.282 Sum_probs=357.2
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|.+.++++|+++|+.+. + +.+||+||.++++++|.+|.+.|+++||+|+|+++|+++|+++++
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~l 105 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL 105 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999864 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+..........++..++.... ....|
T Consensus 106 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 175 (600)
T PRK08279 106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD----------DPEGY 175 (600)
T ss_pred HHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc----------ccccH
Confidence 99999999999999999999999999999999999988777766655444333333333321100 01234
Q ss_pred HHHHhcCccC----CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHH
Q 007169 237 SNLLSQGRSN----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (615)
Q Consensus 237 ~~l~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (615)
.++....... ........++++++|+|||||||.||||++||+++++.+.+....+++.++|++++.+|++|.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~ 255 (600)
T PRK08279 176 EDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGG 255 (600)
T ss_pred HHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhH
Confidence 4443322111 111233457899999999999999999999999999999887777889999999999999999998
Q ss_pred HHHH-HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcC
Q 007169 313 ANQV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (615)
Q Consensus 313 ~~~~-~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (615)
...+ .++..|+++++.+ +++..+++.++++++|++.++|++++.+.+.....
T Consensus 256 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~-------------------------- 309 (600)
T PRK08279 256 TVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP-------------------------- 309 (600)
T ss_pred HHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc--------------------------
Confidence 8655 4677888888876 78999999999999999999999998776521000
Q ss_pred CCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCCCCcCCCC
Q 007169 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (615)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (615)
.....++|.+ +|+++++++.+.+...|+. .+++.||+||++...+.. ....+++|.+.
T Consensus 310 ----------------~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~ 368 (600)
T PRK08279 310 ----------------TDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVP 368 (600)
T ss_pred ----------------cccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCccccccc
Confidence 0001367754 4778999999999998876 599999999987543321 23456778766
Q ss_pred C----CeeEEEeecCCC----------CCCCCCCCCCcceEE--EecCcccccccCChhhhhhcc------CCCCeeecc
Q 007169 470 A----ACEIKLVDVPEM----------NYTSEDQPCPRGEIC--VRGPLIFKGYYKDEIQTKEVI------DEDGWFHTG 527 (615)
Q Consensus 470 ~----~~ev~ivd~~~~----------~~~~~~~~~~~GEi~--vrg~~v~~GY~~~~~~t~~~~------~~~gw~~TG 527 (615)
+ +..+...+.+.+ ..++.|+ .|||+ ++|++++.|| ++++.|.+.| +.++||+||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~---~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG 444 (600)
T PRK08279 369 LWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGE---VGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG 444 (600)
T ss_pred ccccccceeeeeccCcCceeeCCCCccccCCCCC---ceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec
Confidence 6 333322221111 1234444 89998 7899999999 9999998876 236899999
Q ss_pred cEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC----CeEEEEEEe------CHHHHH
Q 007169 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN----SALVAIVSV------DQDALK 597 (615)
Q Consensus 528 Dlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~------~~~~l~ 597 (615)
|+|++|+||+|++.||.||+||+ +|++|+|.+||+++.++|+|.+|+|+|.++. ...+++|+. +.+++.
T Consensus 445 Dlg~~~~dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~ 523 (600)
T PRK08279 445 DLMRDDGFGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALA 523 (600)
T ss_pred ceEEEcCCccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCHHHHH
Confidence 99999999999999999999997 8999999999999999999999999997532 334444443 347888
Q ss_pred HHHHHc
Q 007169 598 AWAASE 603 (615)
Q Consensus 598 ~~~~~~ 603 (615)
++++++
T Consensus 524 ~~l~~~ 529 (600)
T PRK08279 524 AHLYER 529 (600)
T ss_pred HHHHhh
Confidence 888865
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=511.01 Aligned_cols=453 Identities=22% Similarity=0.330 Sum_probs=355.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+++.++.++|+..++++|+..++ +.+...++.+||.||++++.++|++|.+.|+++||+|+++++|+++|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~ 90 (579)
T PRK09192 17 YADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA 90 (579)
T ss_pred ccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence 457789999999999998876654 22222357799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCc
Q 007169 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (615)
++||+++|++++|+++... .+++.++++.++++++|++....+.+.+.....+ .+
T Consensus 91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~~--------------- 152 (579)
T PRK09192 91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---LL--------------- 152 (579)
T ss_pred HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---cc---------------
Confidence 9999999999999987443 6899999999999999999876665554332111 11
Q ss_pred CCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc-CcccCCCcEEEEcCCh
Q 007169 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPL 306 (615)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-~~~~~~~d~~l~~lPl 306 (615)
...++.++...... ........++++++|+|||||||.||||+++|++++..+..... .+++.++|++++++|+
T Consensus 153 ----~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (579)
T PRK09192 153 ----HVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPF 227 (579)
T ss_pred ----ceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCC
Confidence 11233333322211 11223356789999999999999999999999999988877766 6888999999999999
Q ss_pred HHHHHHHHHH-HHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q 007169 307 AHIYERANQV-MTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (615)
Q Consensus 307 ~h~~~~~~~~-~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (615)
+|.+++...+ .++..|+++.+.+ .++..+++.+.++++|+++..|..+..+.......
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~---------------- 291 (579)
T PRK09192 228 YHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK---------------- 291 (579)
T ss_pred CCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----------------
Confidence 9999988644 5688899987765 37889999999999998776555444433211000
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Cccccccccccccccccc
Q 007169 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQ 454 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~ 454 (615)
..+....+++|.+++||+++++++.+.+.+.++ ..+++.||+||++..++.
T Consensus 292 -----------------------~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~ 348 (579)
T PRK09192 292 -----------------------DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSF 348 (579)
T ss_pred -----------------------cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEec
Confidence 000000148999999999999999999988763 348999999999765543
Q ss_pred cCCCC----------------------------CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCccccc
Q 007169 455 LDEGD----------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (615)
Q Consensus 455 ~~~~~----------------------------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~G 506 (615)
..... ...+++|.|+|+++++|+| +++..++.+. .|||+++|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~---~Gel~i~g~~~~~g 424 (579)
T PRK09192 349 SPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERV---VGHICVRGPSLMSG 424 (579)
T ss_pred cCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCC---EEEEEecCCchhhh
Confidence 32211 0125799999999999999 5566677666 89999999999999
Q ss_pred ccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcc--eEEEEeeCCC--
Q 007169 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVG--QCFVYGDSFN-- 582 (615)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~--~~~V~g~~~~-- 582 (615)
||++ +.+.+.+..+|||+|||+|++ ++|+++++||+||+||+ +|++|+|.+||+++.+||+|. +|+|++.+++
T Consensus 425 Y~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~ 501 (579)
T PRK09192 425 YFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG 501 (579)
T ss_pred hcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC
Confidence 9999 678888888999999999999 89999999999999997 899999999999999999998 8999987654
Q ss_pred CeEEEEEEeC------HHHHHHHHHH
Q 007169 583 SALVAIVSVD------QDALKAWAAS 602 (615)
Q Consensus 583 ~~~va~vv~~------~~~l~~~~~~ 602 (615)
+.++++|++. .+++.+++++
T Consensus 502 ~~~~~~v~~~~~~~~~~~~l~~~~~~ 527 (579)
T PRK09192 502 EKIVLLVQCRISDEERRGQLIHALAA 527 (579)
T ss_pred eeEEEEEEecCCChHHHHHHHHHHHH
Confidence 4678887753 2456666654
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=501.83 Aligned_cols=430 Identities=18% Similarity=0.217 Sum_probs=354.0
Q ss_pred CHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
++.+.|.+.++.+|+++|+... + +.+||+||.+++.++|..|.+.|+++||+|+|+++|+.+|+++++||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5789999999999999998754 3 359999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 007169 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (615)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
++|++++|+++.++.+++.++++.++++.++++........ ... ++.++. ..++
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-------~~~-~~~~~~------------------~~~~ 125 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV-------GTQ-IITLSA------------------LEQA 125 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc-------CCc-eEEchH------------------hhhh
Confidence 99999999999999999999999999999999876432221 111 111110 1111
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHH
Q 007169 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (615)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l 319 (615)
...... ........++++++|+|||||||.||+|+++|+++...+.+....+.+..++++++.+|++|.+++...+.++
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l 204 (502)
T TIGR01734 126 ETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL 204 (502)
T ss_pred hhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence 111111 1112234678999999999999999999999999999888777778888999999999999999988888899
Q ss_pred HhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 320 YSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 320 ~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
..|+++++++ .++..+++.++++++|.+.++|.++..++....
T Consensus 205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~--------------------------------- 251 (502)
T TIGR01734 205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPN--------------------------------- 251 (502)
T ss_pred HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccc---------------------------------
Confidence 9999999876 478999999999999999999999876653100
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC-----CCCCCCCcCCCC
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-----GDNLSGHVGSPN 469 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~ 469 (615)
......++++.+++||++++.++.+.+.+.+ ++++++.||+||+++.++.... ......++|.|.
T Consensus 252 ---------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~ 322 (502)
T TIGR01734 252 ---------FNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAK 322 (502)
T ss_pred ---------cccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcccccccc
Confidence 0000114899999999999999999998887 7899999999998754432211 123446799999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
++++++|+| +++..++.|+ .|||+++|+.++.||+++++.|.+.| +.++||+|||+|++|++ +|+++||.||
T Consensus 323 ~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d 397 (502)
T TIGR01734 323 PDMNLFIMD-EEGEPLPEGE---KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDF 397 (502)
T ss_pred CCCEEEEEC-CCCCCCCCCC---eeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccC
Confidence 999999999 4456666676 89999999999999999999998876 33469999999999976 9999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeC--C--CCeEEEEEEeCH
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--F--NSALVAIVSVDQ 593 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~--~~~~va~vv~~~ 593 (615)
+|++ +|++|+|++||+++.++|+|.+++|++.. . .+.++++|++++
T Consensus 398 ~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~ 447 (502)
T TIGR01734 398 QIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPET 447 (502)
T ss_pred eEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecc
Confidence 9997 89999999999999999999999999843 2 257899999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-59 Score=497.29 Aligned_cols=401 Identities=30% Similarity=0.460 Sum_probs=321.2
Q ss_pred HHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCe
Q 007169 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164 (615)
Q Consensus 85 l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v 164 (615)
|+++++++||++|+++ +..+++||+||+++++++|..|.+.|+++||+|+|+++|+++|+++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 6899999999999986 11367999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhccceEEEE----cccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHH
Q 007169 165 SVPLYDTLGPDAVKYIVNHASVQAVFC----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240 (615)
Q Consensus 165 ~vpl~~~~~~~~l~~il~~~~~~~vi~----~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (615)
++|+++.++.+++.+++++++++++|+ +......+.+..........++.++..... ..+.+.
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 139 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLP-------------KKEALK 139 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCT-------------TCHHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccc-------------cccccc
Confidence 999999999999999999999999997 222233344444333445666666642210 001111
Q ss_pred hcCccCCCCCCC-CCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc--cCcccCCCcEEEEcCChHHHHHH-HHHH
Q 007169 241 SQGRSNLQPFSP-PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYER-ANQV 316 (615)
Q Consensus 241 ~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~--~~~~~~~~d~~l~~lPl~h~~~~-~~~~ 316 (615)
......... .+ ..++++++++|||||||.||+|+++|+++++.+.... ...+++ |++++++|++|.+++ ...+
T Consensus 140 ~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~ 216 (417)
T PF00501_consen 140 SASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALL 216 (417)
T ss_dssp HHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHH
T ss_pred ccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccc
Confidence 000000000 00 0568999999999999999999999999999977753 223333 699999999999999 5677
Q ss_pred HHHHhCcEEEEecCC----hHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 317 MTVYSGVAVGFYQGD----NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 317 ~~l~~G~~i~~~~~~----~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.+++.|+++++++.. +..+++.+++++||+++++|++++.+.+..... .
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~-------------------------- 269 (417)
T PF00501_consen 217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T-------------------------- 269 (417)
T ss_dssp HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H--------------------------
T ss_pred ccccccccccccccccccccccchhccccccccccccccccccccccccccc-c--------------------------
Confidence 899999999998832 467899999999999999999999997621110 0
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCC--CCCCCcCCCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (615)
+.+....+++|.+++||+++++++.+++++.++. ++++.||+||++.+++...... ...+++|.|+
T Consensus 270 -----------~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 338 (417)
T PF00501_consen 270 -----------KISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPL 338 (417)
T ss_dssp -----------HGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEES
T ss_pred -----------cccccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccc
Confidence 0000011469999999999999999999999987 8999999999998887553222 5778999999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
|+++++|+|++++++++.|+ .|||+|+|+.++.||+++|+.|++.|+++|||+|||+|++|+||+|+++||.||+||
T Consensus 339 ~~~~~~ivd~~~~~~~~~g~---~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~ 415 (417)
T PF00501_consen 339 PGVEVKIVDPNTGEPLPPGE---PGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIK 415 (417)
T ss_dssp TTEEEEEECTTTSSBESTTS---EEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEE
T ss_pred cccccccccccccccccccc---cccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEE
Confidence 99999999977788888887 899999999999999999999999997668999999999999999999999999999
Q ss_pred c
Q 007169 550 L 550 (615)
Q Consensus 550 l 550 (615)
+
T Consensus 416 ~ 416 (417)
T PF00501_consen 416 V 416 (417)
T ss_dssp E
T ss_pred e
Confidence 6
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=594.76 Aligned_cols=445 Identities=22% Similarity=0.250 Sum_probs=373.4
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...+++++|++.++++||++|+.+. + +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++|+++++
T Consensus 510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3468999999999999999999864 3 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|+++||+++.++.+++.++++++++++++++......+. ....+. ++.++...
T Consensus 581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~-~~~~~~~~----------------- 638 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP----VPAGLR-SLCLDEPA----------------- 638 (3956)
T ss_pred HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----cccCcc-EEEecccc-----------------
Confidence 99999999999999999999999999999999999875433221 111122 22222110
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
+..... ....+.....++++++|+|||||||.||||+++|+++.+.+.+....+++.++|+++.+.|++|..+....+
T Consensus 639 -~~~~~~-~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 716 (3956)
T PRK12467 639 -DLLCGY-SGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELF 716 (3956)
T ss_pred -cccccc-CCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHH
Confidence 000000 111122345689999999999999999999999999999998888888999999999999999999998889
Q ss_pred HHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 317 ~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+....
T Consensus 717 ~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------------- 767 (3956)
T PRK12467 717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV----------------------------- 767 (3956)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcc-----------------------------
Confidence 9999999999986 5899999999999999999999999988752110
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC----CCCCCcCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----NLSGHVGS 467 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~----~~~~~vG~ 467 (615)
....++|.+++||+++++++.+.|++.+ +++++|.||+||++..++...... ....++|+
T Consensus 768 ---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 832 (3956)
T PRK12467 768 ---------------ALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQ 832 (3956)
T ss_pred ---------------ccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCCcccC
Confidence 0013679999999999999999998876 689999999999987665443322 12367999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC-------CCeeecccEEEEecCCcEEE
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~-------~gw~~TGDlg~~~~dG~l~i 540 (615)
|+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|+|
T Consensus 833 p~~~~~~~i~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~ 908 (3956)
T PRK12467 833 PLANLGLYILD-HYLNPVPVGV---VGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEY 908 (3956)
T ss_pred CcCCCEEEEEC-CCCCCCCCCC---ceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEE
Confidence 99999999999 5677888887 8999999999999999999999999842 34999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeC-----------HHHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVD-----------QDALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~-----------~~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|.|||++|.++|+|.+|+|++.+.. +.++|+|++. .++++++++++
T Consensus 909 ~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~l~~~l~~~ 983 (3956)
T PRK12467 909 LGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQV 983 (3956)
T ss_pred eccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEecccccccccccCHHHHHHHHHhh
Confidence 9999999998 8999999999999999999999999986533 5899999953 25678888764
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-58 Score=498.18 Aligned_cols=445 Identities=20% Similarity=0.181 Sum_probs=349.3
Q ss_pred HHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEE
Q 007169 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166 (615)
Q Consensus 87 ~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~v 166 (615)
.+++++|+++|+.+. +.. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 456789999999764 211 4699999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccC
Q 007169 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246 (615)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (615)
|+++.++++++.++++++++++++++............. ....+.+.... .....+++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~~-- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEI-----------DGFGSFEAALAGAG-- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCcc-----------cccccHHHHhcccC--
Confidence 999999999999999999999999987543322221111 11222222110 01123443322110
Q ss_pred CCCCCCCCCCCeEEEEeccCCCCCCcEEEe--cHHHHHHHH----HhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHH
Q 007169 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASV----AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (615)
Q Consensus 247 ~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~--th~~l~~~~----~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~ 320 (615)
+ .....+++++|+|||||||.||||++ +|.++.... ......+.+..+|++++.+|++|.+++......+.
T Consensus 142 --~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~ 218 (501)
T PRK13390 142 --P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA 218 (501)
T ss_pred --C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence 0 11122357999999999999999995 555554321 11122356788999999999999998866555677
Q ss_pred hCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhH
Q 007169 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (615)
Q Consensus 321 ~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 399 (615)
.|+++++.+ .++..+++.|+++++|++.++|+++..+.+......
T Consensus 219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------- 264 (501)
T PRK13390 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR---------------------------------- 264 (501)
T ss_pred cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------------
Confidence 899998877 789999999999999999999999988865210000
Q ss_pred HhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCeeEEEee
Q 007169 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (615)
Q Consensus 400 ~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd 478 (615)
+.....++|.+++||+++++++.+.+++.++.++++.||+||+++++...... ....+++|+|+++ +++|+|
T Consensus 265 ------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d 337 (501)
T PRK13390 265 ------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD 337 (501)
T ss_pred ------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEEC
Confidence 00001479999999999999999999998899999999999998655433222 2456789999999 799999
Q ss_pred cCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC--CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeee
Q 007169 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYI 556 (615)
Q Consensus 479 ~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~--~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v 556 (615)
++++.++.|+ .|||+|+|++++.||+++|+.|++.|.. +||++|||+|++|+||++++.||.||+||+ +|++|
T Consensus 338 -~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~-~G~~v 412 (501)
T PRK13390 338 -DDGNELPAGR---IGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIIS-GGVNI 412 (501)
T ss_pred -CCCCCCCCCC---ceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeE-CCeee
Confidence 5667777776 8999999999999999999999998743 689999999999999999999999999996 89999
Q ss_pred chHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 557 AAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 557 ~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
+|.+||+++.++|+|.+++|++.++. +.++++|++.+ +++.++++++
T Consensus 413 ~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 471 (501)
T PRK13390 413 YPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSR 471 (501)
T ss_pred CHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHh
Confidence 99999999999999999999998754 57888887532 3566777654
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-57 Score=497.18 Aligned_cols=466 Identities=22% Similarity=0.288 Sum_probs=361.2
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.+.|++.++.+|+++|+.+. + ..+||+||.+++.++|.+|.+.|+++||+|+|+++|+++++++++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 57889999999999999999753 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++.+++.+++++++++.++++.+..+.+.+.....+..+. +.++...... .....+...++++
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~ 164 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDPEY---PGGRFIGALDYEA 164 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecCcccc---ccCCCcccccHHH
Confidence 99999999999999999999999999999999999887776655444433322 2222211100 0011123345666
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (615)
+............+.+.+++++|+|||||||.||||+++|+++...+........+..++++++.+|++|.+++...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~ 244 (545)
T PRK08162 165 FLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTV 244 (545)
T ss_pred HhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHH
Confidence 65433221111122345678999999999999999999999987666554445667788999999999999998765544
Q ss_pred HHhCcEEEEe-cCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007169 319 VYSGVAVGFY-QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (615)
Q Consensus 319 l~~G~~i~~~-~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (615)
.+.|++.++. ..++..+++.++++++|++.++|.+++.|.+.....
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------- 291 (545)
T PRK08162 245 AARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW--------------------------------- 291 (545)
T ss_pred HHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------------
Confidence 4445444444 489999999999999999999999999887521000
Q ss_pred hHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-----------CCCCCCcC
Q 007169 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-----------DNLSGHVG 466 (615)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG 466 (615)
+..+ .+.+.+++||+++++++.++++. +++++++.||+||+++.+...... ....+++|
T Consensus 292 --------~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (545)
T PRK08162 292 --------RAGI-DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG 361 (545)
T ss_pred --------ccCC-ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccchhhccCCCC
Confidence 0001 24556678999999999999887 499999999999986544332111 01234567
Q ss_pred CCCC-CeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 007169 467 SPNA-ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (615)
Q Consensus 467 ~p~~-~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (615)
.+.+ +.+++|+|++++..++.+.. ..|||+|+|+.++.|||++++.|.+.| .+|||+|||+|++|+||+++++||.|
T Consensus 362 ~~~~~~~~~~i~d~~~~~~~~~~g~-~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~ 439 (545)
T PRK08162 362 VRYPLQEGVTVLDPDTMQPVPADGE-TIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSK 439 (545)
T ss_pred cccCCcceEEEEcCCCCcccCCCCC-ceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEeccc
Confidence 6655 34688988666665554320 269999999999999999999999999 68999999999999999999999999
Q ss_pred CeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
|+||+ +|++|+|.+||+++.++|+|.+++|++.++. +.++++|++. .+++.++++++
T Consensus 440 ~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 505 (545)
T PRK08162 440 DIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREH 505 (545)
T ss_pred ceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99995 8999999999999999999999999997644 4788888854 45777887753
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=542.84 Aligned_cols=459 Identities=24% Similarity=0.264 Sum_probs=363.3
Q ss_pred CCCCHHHHHHHHHHhcCC-CceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...++.+.|.+.++++|+ +.++.+. ++ +.+||+||+++++++|+.|++ |+++||+|+++++|++||++++
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~ 699 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTF 699 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHH
Confidence 457788999999999875 4555321 12 359999999999999999975 9999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHH--HhhhccCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l--~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+||+++|++++|++++++.+++.+++++++++++|++.+..+.. .....+++....++.+++...... ..
T Consensus 700 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~ 771 (1140)
T PRK06814 700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIG--------LA 771 (1140)
T ss_pred HHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCC--------hH
Confidence 99999999999999999999999999999999999987654321 111122233334555443211000 00
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
..+.+....... ..+.+...++|+++|+|||||||.||||++||+++.+.+......+++.++|++++.+|++|.+++.
T Consensus 772 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 850 (1140)
T PRK06814 772 DKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLT 850 (1140)
T ss_pred HHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHH
Confidence 011111111111 1111235789999999999999999999999999998888777778889999999999999999985
Q ss_pred H-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcC
Q 007169 314 N-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (615)
Q Consensus 314 ~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (615)
. .+.++..|+++++.+ .+...+.+.++++++|++.++|++++.+.+...
T Consensus 851 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~---------------------------- 902 (1140)
T PRK06814 851 GGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH---------------------------- 902 (1140)
T ss_pred HHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc----------------------------
Confidence 4 567899999999876 466778899999999999999999987754200
Q ss_pred CCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCC
Q 007169 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (615)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (615)
....+++|.+++||+++++++.+.+++.+++++++.||+||++..++...+.+...+++|+|+|
T Consensus 903 ----------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 966 (1140)
T PRK06814 903 ----------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLP 966 (1140)
T ss_pred ----------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCC
Confidence 0001489999999999999999999999999999999999998776655444566789999999
Q ss_pred CeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEc
Q 007169 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKL 550 (615)
Q Consensus 471 ~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl 550 (615)
++++++++.++ .++ .|||+++|++++.|||++++.+......+|||+|||+|++|+||++++.||.||+||+
T Consensus 967 g~~~~~~~~~~-----~~~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~ 1038 (1140)
T PRK06814 967 GIEYRLEPVPG-----IDE---GGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKI 1038 (1140)
T ss_pred CCeEEEeecCC-----CCC---ceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeee
Confidence 99999987432 233 7999999999999999987543322236899999999999999999999999999996
Q ss_pred CCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe---CHHHHHHHHHHcCCC
Q 007169 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV---DQDALKAWAASEGIQ 606 (615)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~---~~~~l~~~~~~~~~~ 606 (615)
+|++|+|.|||+++.+|+.|.+++|++.+++ +.+++++.. +.+++.++++++.++
T Consensus 1039 -~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~l~ 1099 (1140)
T PRK06814 1039 -AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDATRAAFLAHAKAAGAS 1099 (1140)
T ss_pred -CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcCHHHHHHHHHHcCCC
Confidence 8999999999999999999999999997754 466666653 457888999876553
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=600.94 Aligned_cols=438 Identities=19% Similarity=0.237 Sum_probs=375.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...+++++|++.++++|+++|+.+. + +.+||+||.++++++|++|.+.|+++|++|+|+++|+++|++++
T Consensus 3054 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~~~s~~~iv~~ 3124 (5163)
T PRK12316 3054 PLERGVHRLFEEQVERTPDAVALAFG---E------QRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGL 3124 (5163)
T ss_pred CCcCCHHHHHHHHHHhCCCCeeEeeC---C------eEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHH
Confidence 44578999999999999999999865 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|+++|||++.++.+++.++++++++++++++... . ....... .++.++...
T Consensus 3125 lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~--~----~~~~~~~-~~~~~~~~~---------------- 3181 (5163)
T PRK12316 3125 LAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL--R----LPLAQGV-QVLDLDRGD---------------- 3181 (5163)
T ss_pred HHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc--c----CCccCCc-cEEEecccc----------------
Confidence 9999999999999999999999999999999999987654 1 1111112 233332211
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
.. .....+.....++++++|+|||||||.||||+++|+++.+.+.+....+++.++|+++.+.|++|..+....
T Consensus 3182 -----~~-~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i 3255 (5163)
T PRK12316 3182 -----EN-YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEEL 3255 (5163)
T ss_pred -----cc-ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHH
Confidence 00 001112234568899999999999999999999999999999888888899999999999999999988888
Q ss_pred HHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
+.+|+.|+++++.+ .++..+.+.+++.++|++..+|+++..+.+...
T Consensus 3256 ~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~----------------------------- 3306 (5163)
T PRK12316 3256 FWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED----------------------------- 3306 (5163)
T ss_pred HHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhccc-----------------------------
Confidence 99999999999976 478899999999999999999999988765210
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCC--CCCCCCCcCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE--GDNLSGHVGSPN 469 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~ 469 (615)
.....++|.+++||+++++++.++|. .+++++|+||+||++..++.... ......++|+|+
T Consensus 3307 ---------------~~~~~~lr~~~~gGe~l~~~~~~~~~--~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~ 3369 (5163)
T PRK12316 3307 ---------------AHRCTSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPI 3369 (5163)
T ss_pred ---------------cccCCcceEEEEccccCCHHHHHHHH--hCCcEeeccCCCccEeeEeEEeccCCCCCCCccceec
Confidence 00114899999999999999999998 48899999999999977665433 224567899999
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC------CCeeecccEEEEecCCcEEEEcc
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++++++|+| ++++.++.|. .|||+|+|+++++||+|+|+.|+++|.. ++||+|||+|++++||.|+++||
T Consensus 3370 ~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR 3445 (5163)
T PRK12316 3370 ANRACYILD-GSLEPVPVGA---LGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGR 3445 (5163)
T ss_pred CCCEEEEEC-CCCCCCCCCC---CceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecc
Confidence 999999999 6778888887 8999999999999999999999999954 36999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCH------HHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~------~~l~~~~~~~ 603 (615)
+|++||+ +|++|+|.|||++|.++|+|.+|+|++.. +++++|+|+++. ++++++++++
T Consensus 3446 ~d~qvKi-~G~rIel~eIE~~l~~~~~V~~a~v~~~~-~~~l~a~vv~~~~~~~~~~~l~~~l~~~ 3509 (5163)
T PRK12316 3446 VDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVD-GRQLVAYVVPEDEAGDLREALKAHLKAS 3509 (5163)
T ss_pred cCCeEee-CcEeeChHHHHHHHHhCCCcceEEEEEcc-CCeEEEEEEcCCcCcccHHHHHHHHHhh
Confidence 9999998 89999999999999999999999999987 678999999853 5677887764
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=598.48 Aligned_cols=447 Identities=19% Similarity=0.204 Sum_probs=374.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...+++++|++.++++||++|+.+. ++. +||+||.++++++|+.|.+.|+++|++|+|++++++++++++
T Consensus 3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~~~------~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~ 3787 (4334)
T PRK05691 3717 PLEQSYVRLFEAQVAAHPQRIAASCL---DQQ------WSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMI 3787 (4334)
T ss_pred ccccCHHHHHHHHHHhCCCceEEEcC---CCc------ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34569999999999999999999875 543 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCC--ceEEEEECCCCCCCCCCCcCCCceE
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+||+++|+++|||++.++.+++.++++++++++++++....+........+.. ...++..+.
T Consensus 3788 lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 3851 (4334)
T PRK05691 3788 VGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE---------------- 3851 (4334)
T ss_pred HHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc----------------
Confidence 99999999999999999999999999999999999998765543333322211 111222111
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
..........+.....++++++|+|||||||.||||+++|+++++.+.+....++++++|+++...|++|..+..
T Consensus 3852 -----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~ 3926 (4334)
T PRK05691 3852 -----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVW 3926 (4334)
T ss_pred -----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHH
Confidence 111111111222345789999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 314 ~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
..+.++..|+++++++ .++..+.+.++++++|++..+|++++.+++....
T Consensus 3927 ~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------- 3980 (4334)
T PRK05691 3927 QFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ-------------------------- 3980 (4334)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc--------------------------
Confidence 9999999999999876 4789999999999999999999999887642000
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC----CCCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----NLSGH 464 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~----~~~~~ 464 (615)
...+||.+++||+++++++.+.|.+.+ +++++|.||+||++..++...... ....+
T Consensus 3981 -------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~ 4041 (4334)
T PRK05691 3981 -------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLP 4041 (4334)
T ss_pred -------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCC
Confidence 014899999999999999999987765 789999999999987665432211 23457
Q ss_pred cCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC-------CCCeeecccEEEEecCCc
Q 007169 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-------EDGWFHTGDIGMWIPGGR 537 (615)
Q Consensus 465 vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~-------~~gw~~TGDlg~~~~dG~ 537 (615)
+|+|+++++++|+| +.++.++.|. .|||+|+|++|++||+|+|+.|+++|. .++||+|||+|++++||.
T Consensus 4042 iG~p~~~~~~~v~d-~~~~~~p~g~---~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~ 4117 (4334)
T PRK05691 4042 IGSPTDNNRLYLLD-EALELVPLGA---VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGV 4117 (4334)
T ss_pred CCCccCCCEEEEEC-CCCCCCCCCC---ceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCc
Confidence 99999999999999 6777888887 899999999999999999999999993 357999999999999999
Q ss_pred EEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeC--CCCeEEEEEEeCH---------HHHHHHHHH
Q 007169 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS--FNSALVAIVSVDQ---------DALKAWAAS 602 (615)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~--~~~~~va~vv~~~---------~~l~~~~~~ 602 (615)
|+|+||+|++||+ +|++|++.|||++|.++|+|.+++|+... .++.++|+|++.. +.++.++++
T Consensus 4118 l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~ 4192 (4334)
T PRK05691 4118 LEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQTVLAQGALLERIKQRLRA 4192 (4334)
T ss_pred EEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCcccccchHHHHHHHHHHHh
Confidence 9999999999998 89999999999999999999999887533 2468999999743 346666654
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-58 Score=506.13 Aligned_cols=443 Identities=19% Similarity=0.249 Sum_probs=338.6
Q ss_pred CHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
++.++|++.+..+|+++|+.+........+..+.+||+||.+++.++|++|.+.| .+||+|+|+++|+++|+++++||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 6889999999999999999875110011122467999999999999999999999 689999999999999999999999
Q ss_pred hcCCeEEecCC---CCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCC--CceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 160 AYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP--TVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 160 ~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
++|++++|+++ .++.+++.++|+++++++++++.+..+.+.+...... ....++.++..
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 144 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL---------------- 144 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc----------------
Confidence 99999999997 4578999999999999999999877665544321111 11122222110
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC-cc-----cCCCcEEEEcCChHH
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TK-----FYPSDVYISYLPLAH 308 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~lPl~h 308 (615)
++ ............++++++|+|||||||.||||++||+++++.+...... +. ...++++++++|++|
T Consensus 145 ---~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 218 (578)
T PRK05850 145 ---DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218 (578)
T ss_pred ---cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence 00 0000011223457899999999999999999999999998876554322 11 356889999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHH-HHHHhhcCcchHHHHHHHHHH
Q 007169 309 IYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAG-ITSAVRTSGGLRERLFNAAYN 381 (615)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~~~~~~~~~~a~~ 381 (615)
.+++.. .+.+++.|+++++.+ .++..+++.+++++++++ .+|..+..+... ....
T Consensus 219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~----------------- 280 (578)
T PRK05850 219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD----------------- 280 (578)
T ss_pred CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----------------
Confidence 999875 567899999999876 278999999999999855 566654433221 0000
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Ccccccccccccccccccc
Q 007169 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQL 455 (615)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~~ 455 (615)
.......+++|.+++||+++++++.++|.+.|+ ..+++.||+||++..+...
T Consensus 281 ----------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 338 (578)
T PRK05850 281 ----------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATR 338 (578)
T ss_pred ----------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheecc
Confidence 000000147999999999999999999988763 3689999999987544432
Q ss_pred CCCCC-------------------------CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCC
Q 007169 456 DEGDN-------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (615)
Q Consensus 456 ~~~~~-------------------------~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~ 510 (615)
..... ...++|.|. +.+++++|++++..++.|+ .|||+|+|++++.|||++
T Consensus 339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~ 414 (578)
T PRK05850 339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT---VGEIWVHGDNVAAGYWQK 414 (578)
T ss_pred CCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC---EEEEEEecCcccccccCC
Confidence 21100 012345554 5799999977777788786 999999999999999999
Q ss_pred hhhhhhccC-----------CCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEee
Q 007169 511 EIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579 (615)
Q Consensus 511 ~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~ 579 (615)
|+.|++.|. .+|||+|||+|+++ ||+|+|+||+||+||+ +|++|+|.+||+++.+||.+. ++|++.
T Consensus 415 ~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~~~-~~v~~v 491 (578)
T PRK05850 415 PEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIV-DGRNHYPDDIEATIQEITGGR-VAAISV 491 (578)
T ss_pred hhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEE-CCeecCHHHHHHHHHHhcCCc-EEEEEe
Confidence 999999984 25799999999998 9999999999999997 899999999999999999964 777777
Q ss_pred CCC--CeEEEEEEeC
Q 007169 580 SFN--SALVAIVSVD 592 (615)
Q Consensus 580 ~~~--~~~va~vv~~ 592 (615)
++. +.++|+|+++
T Consensus 492 ~~~~~~~~~a~v~~~ 506 (578)
T PRK05850 492 PDDGTEKLVAIIELK 506 (578)
T ss_pred cCCCceEEEEEEEec
Confidence 654 5789999864
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-57 Score=492.47 Aligned_cols=451 Identities=20% Similarity=0.216 Sum_probs=363.5
Q ss_pred HHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeE
Q 007169 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (615)
Q Consensus 86 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~ 165 (615)
...++++|+++|+.+. ++. +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++|+++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 3567889999999763 221 459999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCcc
Q 007169 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (615)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (615)
+|+++.++.+++.++++.++++.++++....+.+.+....++..+..+.++..... .....+++......
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~- 146 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------EGFVGYAEAVAGLP- 146 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC---------cccccHHHHhcCCC-
Confidence 99999999999999999999999999988777666665555555555555432110 11233444332111
Q ss_pred CCCCCCCCCCCCeEEEEeccCCCCCCcEEEe--cHHHHHHHH---HhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHH
Q 007169 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASV---AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (615)
Q Consensus 246 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~--th~~l~~~~---~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~ 320 (615)
.....+.++.++++|||||||.||||++ +|.++.... ......+.+.+++++++.+|++|.+++...+.++.
T Consensus 147 ---~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~ 223 (511)
T PRK13391 147 ---ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIR 223 (511)
T ss_pred ---CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 1111234567899999999999999995 466654322 22334466788999999999999999887788899
Q ss_pred hCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhH
Q 007169 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (615)
Q Consensus 321 ~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 399 (615)
.|+++++.+ .++..+++.++++++|++.++|+++..+.+......
T Consensus 224 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------------- 269 (511)
T PRK13391 224 LGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---------------------------------- 269 (511)
T ss_pred cCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------------
Confidence 999999887 799999999999999999999999987764210000
Q ss_pred HhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCeeEEEee
Q 007169 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (615)
Q Consensus 400 ~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd 478 (615)
.+...+++|.+++||+++++++.+++++.+|..+++.||+||++.++...... ....+++|.|+++ +++|+|
T Consensus 270 ------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d 342 (511)
T PRK13391 270 ------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD 342 (511)
T ss_pred ------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC
Confidence 00011489999999999999999999998999999999999998765443222 2456799999999 699998
Q ss_pred cCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCC-CeeecccEEEEecCCcEEEEccCCCeEEcCCeeeec
Q 007169 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-GWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA 557 (615)
Q Consensus 479 ~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~-gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~ 557 (615)
+++...+.|. .|||+++|+ ++.|||++++.+++.+..+ |||+|||+|+++++|.+++.||.||+||+ +|++|+
T Consensus 343 -~~~~~~~~g~---~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~-~G~~v~ 416 (511)
T PRK13391 343 -DDGAELPPGE---PGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIIS-GGVNIY 416 (511)
T ss_pred -CCCCCCCCCC---ceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEe-CCEEEC
Confidence 5566667776 899999999 8999999999999988655 99999999999999999999999999996 899999
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
|.+||+++.+||.|.+++|++.++. +.+++++++.+ +++.+||+++
T Consensus 417 ~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (511)
T PRK13391 417 PQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQR 474 (511)
T ss_pred HHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhh
Confidence 9999999999999999999997654 46888887532 5677888764
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=494.89 Aligned_cols=468 Identities=24% Similarity=0.323 Sum_probs=366.7
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
..++.++|..+++++|+++|+... + +++||.||.++++++|..|.+ .|+++||+|+++++|+++|+++++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999753 2 359999999999999999985 899999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCC--CCCCC---------
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD--QIPSL--------- 225 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~--~~~~~--------- 225 (615)
||+++|++++|+++.++.+++.++++.++++.++++.+..+.+.+..... ..+.++....... .....
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYI 171 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEecccccccccccccccchhhhc
Confidence 99999999999999999999999999999999999877655554433221 2233332211000 00000
Q ss_pred ----CcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCc---ccCCCc
Q 007169 226 ----PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (615)
Q Consensus 226 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~---~~~~~d 298 (615)
.........++.+....+...........++++++|+|||||||.||||+++|++++..+......+ ....++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~ 251 (560)
T PRK08974 172 KRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKE 251 (560)
T ss_pred ccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCcc
Confidence 0000001123333333222211112234678999999999999999999999999987765433222 234567
Q ss_pred EEEEcCChHHHHHHHH-HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHH
Q 007169 299 VYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (615)
Q Consensus 299 ~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 375 (615)
.+++.+|++|.+++.. .+.++..|+++++.. .++..+++.++++++|.+.++|+++..+.+...
T Consensus 252 ~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------- 318 (560)
T PRK08974 252 LVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE------------- 318 (560)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC-------------
Confidence 8899999999999765 455778888877754 578899999999999999999999998865210
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccccccc
Q 007169 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (615)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~ 455 (615)
.......++|.+++||+++++.+.+.|++.+|+++++.||+||++..++..
T Consensus 319 -----------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~ 369 (560)
T PRK08974 319 -----------------------------FQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVN 369 (560)
T ss_pred -----------------------------cccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeecc
Confidence 000011489999999999999999999998899999999999998765544
Q ss_pred CCC-CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec
Q 007169 456 DEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (615)
Q Consensus 456 ~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~ 534 (615)
... ....+++|.|+|+++++|+| +++..++.|. .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++
T Consensus 370 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~ 444 (560)
T PRK08974 370 PYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGE---PGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE 444 (560)
T ss_pred CCCCcccCCccccCcCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC
Confidence 322 24467899999999999999 4667777776 89999999999999999999999999 789999999999999
Q ss_pred CCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHc
Q 007169 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASE 603 (615)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~ 603 (615)
+|.++++||.+|+|++ +|++|+|.+||+++.++|+|.+++|++.+++ +.++++|+. +.+++.++++++
T Consensus 445 ~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~~ 520 (560)
T PRK08974 445 EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRRH 520 (560)
T ss_pred CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHhh
Confidence 9999999999999997 7999999999999999999999999997654 356666664 345677777754
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-57 Score=491.01 Aligned_cols=438 Identities=19% Similarity=0.221 Sum_probs=361.6
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.++|++.++.+|+++++... + +.+||.||.+++.++|..|.+.|+++|++|+++++|+.+|+++++||
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~ 72 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA 72 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 57889999999999999998753 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++.+++.++++.+++++++++...... .. .+..+.+++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------------------~~~~~~~~~ 123 (503)
T PRK04813 73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------IL----------------------GIPVITLDE 123 (503)
T ss_pred HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------cc----------------------CCcEEehHH
Confidence 9999999999999999999999999999999998764100 00 011122333
Q ss_pred HHhcC--ccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 239 LLSQG--RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 239 l~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
+.... ...........++++++++|||||||.||+|.+||+++...+......+.+..+++++..+|++|..+....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 203 (503)
T PRK04813 124 LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLY 203 (503)
T ss_pred hhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHH
Confidence 32211 0111112335678899999999999999999999999998887777677888999999999999999987778
Q ss_pred HHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 317 ~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.++..|+++++++ .++..+++.++++++|++..+|+++..+.....
T Consensus 204 ~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~------------------------------ 253 (503)
T PRK04813 204 PTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS------------------------------ 253 (503)
T ss_pred HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc------------------------------
Confidence 8999999999876 478999999999999999999999876543210
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCC-C----CCCCCCcC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-G----DNLSGHVG 466 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-~----~~~~~~vG 466 (615)
..+...+++|.++++|+++++.+.+++.+.| ++.+++.||+||++...+.... . .....++|
T Consensus 254 ------------~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g 321 (503)
T PRK04813 254 ------------FNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIG 321 (503)
T ss_pred ------------cCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCccc
Confidence 0001114899999999999999999999988 7889999999999754432211 1 13456799
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEEcc
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
.|.++++++|+| +++..++.|. .|||+++|+.++.|||++++.|.+.| +..+||+|||+|++ ++|++++.||
T Consensus 322 ~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR 396 (503)
T PRK04813 322 YAKPDSPLLIID-EEGTKLPDGE---QGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGR 396 (503)
T ss_pred ccCCCCEEEEEC-CCCCCCCCCC---ceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEecc
Confidence 999999999999 5666677776 89999999999999999999999887 23359999999999 8999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHH
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAAS 602 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~ 602 (615)
.||+||+ +|++|+|.+||+++.++|+|.+++|++.+++ +.++++|++++ +.+++++++
T Consensus 397 ~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 467 (503)
T PRK04813 397 IDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKE 467 (503)
T ss_pred ccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHh
Confidence 9999997 8999999999999999999999999986543 57899998765 236666664
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=488.49 Aligned_cols=460 Identities=21% Similarity=0.239 Sum_probs=367.5
Q ss_pred CHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
|+.++|.+.++++|+++|+.+. . +.+||.||.++++++|+.|.+.|+++||+|+|+++|+++|+++++||+
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~ 74 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF 74 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999999764 2 359999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHH
Q 007169 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (615)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (615)
++|++++|+++.++.+++.++++++++++++++....+.+.+....++.++.++.++....... ....++++++
T Consensus 75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 148 (533)
T PRK07798 75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDL------LPGAVDYEDA 148 (533)
T ss_pred hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccccc------CCccccHHHH
Confidence 9999999999999999999999999999999998877777776666677777777765321110 0123567777
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---------ccc------CCCcEEEEcC
Q 007169 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---------TKF------YPSDVYISYL 304 (615)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~l 304 (615)
+...... ..... ..++.++|+|||||||.||||+++|+++...+...... ..+ ..+++++..+
T Consensus 149 ~~~~~~~-~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (533)
T PRK07798 149 LAAGSPE-RDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP 226 (533)
T ss_pred HhccCCc-CCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence 6543321 11112 23345789999999999999999999987654432211 111 5678999999
Q ss_pred ChHHHHHHHHHHHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHH-HHHHHHhhcCcchHHHHHHHHH
Q 007169 305 PLAHIYERANQVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIY-AGITSAVRTSGGLRERLFNAAY 380 (615)
Q Consensus 305 Pl~h~~~~~~~~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~~~~~a~ 380 (615)
|++|.+++...+.+++.|+++++.+ .++..+++.++++++|++.++|..+...+ ..+. .
T Consensus 227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~---------------- 289 (533)
T PRK07798 227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A---------------- 289 (533)
T ss_pred chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c----------------
Confidence 9999999988888999999999987 58999999999999999999998775432 2110 0
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC
Q 007169 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD 459 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~ 459 (615)
.......++|.+++||+++++++.+++++.+ ++.+++.||+||++.........
T Consensus 290 ------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~- 344 (533)
T PRK07798 290 ------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK- 344 (533)
T ss_pred ------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC-
Confidence 0001125899999999999999999999988 78999999999986544433221
Q ss_pred CCCCCcC--CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC---CCeeecccEEEEec
Q 007169 460 NLSGHVG--SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE---DGWFHTGDIGMWIP 534 (615)
Q Consensus 460 ~~~~~vG--~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~---~gw~~TGDlg~~~~ 534 (615)
.....| .+.++.+++|+| +++..++.|.+. .|||+ +++.++.|||++++.|++.|.. ++||+|||+|++|+
T Consensus 345 -~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~-~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~ 420 (533)
T PRK07798 345 -GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGE-IGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA 420 (533)
T ss_pred -CCccCCCCccCCCceEEEEC-CCCCCCCCCCCC-eeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC
Confidence 112334 788999999999 455566666511 26665 5678999999999999998842 46999999999999
Q ss_pred CCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe------CHHHHHHHHHHc
Q 007169 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV------DQDALKAWAASE 603 (615)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~------~~~~l~~~~~~~ 603 (615)
||++++.||.||+||. +|++|+|++||+++.++|+|.+++|+|.++. +.++++|++ +.+++.++++++
T Consensus 421 ~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~ 497 (533)
T PRK07798 421 DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSS 497 (533)
T ss_pred CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhh
Confidence 9999999999999995 8999999999999999999999999997643 468888874 446788888764
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=486.93 Aligned_cols=381 Identities=19% Similarity=0.157 Sum_probs=314.5
Q ss_pred eeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEc
Q 007169 114 MTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192 (615)
Q Consensus 114 ~Ty~el~~~~~~la~~L~~~Gv-~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~ 192 (615)
+.|+||.+++.++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.++++++++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 6899999999999999999998 579999999999999999999999999999999999999999999999999999987
Q ss_pred ccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCc
Q 007169 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272 (615)
Q Consensus 193 ~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 272 (615)
....... ... .. .......++++++++|||||||.||
T Consensus 100 ~~~~~~~---------------~~~------------------------~~----~~~~~~~~~~~~~i~~TSGTTG~PK 136 (452)
T PRK07445 100 DQLKLSH---------------PPP------------------------LP----SQGILPNLETGWIMIPTGGSSGQIR 136 (452)
T ss_pred Ccccccc---------------CCC------------------------CC----ccccCCCCCCcEEEEeCCCCCCCCc
Confidence 6532100 000 00 0001135689999999999999999
Q ss_pred EEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC-ChHHHHHHHHhhCCeEEeech
Q 007169 273 GAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351 (615)
Q Consensus 273 gv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~i~~~~~t~~~~~P 351 (615)
||++||+++++.+......+++.+ ++.++++|++|.+++...+.+++.|+++++.+. +..........+++|++.++|
T Consensus 137 gV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP 215 (452)
T PRK07445 137 FAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVP 215 (452)
T ss_pred EEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehH
Confidence 999999999888877666566654 467889999999999877889999999998762 222223344578899999999
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHH
Q 007169 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431 (615)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 431 (615)
+++..+.+... ...+++|.+++||+++++++.+.+
T Consensus 216 ~~l~~l~~~~~---------------------------------------------~~l~~l~~i~~gG~~l~~~~~~~~ 250 (452)
T PRK07445 216 TQLQRLLQLRP---------------------------------------------QWLAQFRTILLGGAPAWPSLLEQA 250 (452)
T ss_pred HHHHHHHhhCh---------------------------------------------hhhhcceEEEECCccCCHHHHHHH
Confidence 99998765100 001489999999999999999988
Q ss_pred HHHhCCccccccccccccccccccCCCC--CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccC
Q 007169 432 KICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (615)
Q Consensus 432 ~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~ 509 (615)
+. +++++++.||+||++..++...+.+ ...+++|+|+|+++++|+ .++ .|||+|+|+.++.|||+
T Consensus 251 ~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g~---~Gel~v~g~~~~~gY~~ 317 (452)
T PRK07445 251 RQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQ---TGNITIQAQSLALGYYP 317 (452)
T ss_pred Hh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CCC---cceEEEeCCccchhhcC
Confidence 76 4899999999999976554433332 345789999999999997 133 89999999999999998
Q ss_pred ChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEE
Q 007169 510 DEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALV 586 (615)
Q Consensus 510 ~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~v 586 (615)
++. +.+|||+|||+|++|+||+|+|.||+||+||+ +|++|+|.+||+++.+||+|.+|+|+|.++. +.++
T Consensus 318 ~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~ 390 (452)
T PRK07445 318 QIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVT 390 (452)
T ss_pred Ccc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEE
Confidence 643 35799999999999999999999999999996 8999999999999999999999999998764 4789
Q ss_pred EEEEeC-----HHHHHHHHHHc
Q 007169 587 AIVSVD-----QDALKAWAASE 603 (615)
Q Consensus 587 a~vv~~-----~~~l~~~~~~~ 603 (615)
|+|++. .++++++++++
T Consensus 391 a~vv~~~~~~~~~~l~~~~~~~ 412 (452)
T PRK07445 391 AIYVPKDPSISLEELKTAIKDQ 412 (452)
T ss_pred EEEEeCCCCCCHHHHHHHHHHh
Confidence 999864 46788888875
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-57 Score=484.74 Aligned_cols=408 Identities=25% Similarity=0.304 Sum_probs=340.0
Q ss_pred CHHHHH-HHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 80 TTHDNF-VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 80 tl~~~l-~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
++.+.+ ...++++|+++|+... + +.+||+||.++++++|..|.+.|+++||+|+++++|+++|+++++||
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~ 73 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLAL 73 (458)
T ss_pred hhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHH
Confidence 344444 4558899999999642 2 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|++++|+++.++.+++.+++++++++.++++.+... +.. +..+ .+.
T Consensus 74 ~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~----------------------~~~- 122 (458)
T PRK09029 74 LQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSL----------------------HLQ- 122 (458)
T ss_pred HHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------cccc----------------------ccc-
Confidence 999999999999999999999999999999998766422 100 0000 000
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (615)
. ..........++++++++|||||||.||||++||++++..+......+++.++|++++.+|++|.+++...+.+
T Consensus 123 --~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~ 197 (458)
T PRK09029 123 --L---VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRW 197 (458)
T ss_pred --c---ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHH
Confidence 0 00011223467899999999999999999999999999998887777888999999999999999998777778
Q ss_pred HHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 007169 319 VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD 398 (615)
Q Consensus 319 l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d 398 (615)
+..|+++++.+. ..+++.+ .++|.+..+|+++.++......
T Consensus 198 l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----------------------------------- 238 (458)
T PRK09029 198 LYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----------------------------------- 238 (458)
T ss_pred HhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc-----------------------------------
Confidence 999999998653 5566766 4899999999999887652100
Q ss_pred HHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEee
Q 007169 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478 (615)
Q Consensus 399 ~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd 478 (615)
..++|.+++||+++++.+.++++.. |+++++.||+||++...+.... ....++|.|+++++++|++
T Consensus 239 -----------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--~~~~~~G~~~~~~~~~i~~ 304 (458)
T PRK09029 239 -----------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRA--DGLAGVGSPLPGREVKLVD 304 (458)
T ss_pred -----------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCC--CCCCCCCCCCCCCEEEEeC
Confidence 1379999999999999999998864 9999999999999865543322 2235699999999999976
Q ss_pred cCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeech
Q 007169 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558 (615)
Q Consensus 479 ~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p 558 (615)
|||+|+|+.++.||+++++.+.... .+|||+|||+|++| ||++++.||+||+||+ +|++|+|
T Consensus 305 ---------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~-~G~~v~p 366 (458)
T PRK09029 305 ---------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFS-GGEGIQP 366 (458)
T ss_pred ---------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceee-CCEEeCH
Confidence 8999999999999999998887654 68999999999999 9999999999999996 8999999
Q ss_pred HHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHc
Q 007169 559 EKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASE 603 (615)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~ 603 (615)
.+||+++.++|+|.+++|++.++. +.++|+|+++ .+++.++|+++
T Consensus 367 ~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~ 418 (458)
T PRK09029 367 EEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDK 418 (458)
T ss_pred HHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhh
Confidence 999999999999999999998765 5788998864 56788888864
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=589.79 Aligned_cols=444 Identities=20% Similarity=0.242 Sum_probs=373.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...++.++|.+.++++||++|+.+. ++ .+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++
T Consensus 1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~---~~------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 1198 (4334)
T PRK05691 1128 PAQAWLPELLNEQARQTPERIALVWD---GG------SLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198 (4334)
T ss_pred CccCCHHHHHHHHHHhCCCCeEEEEC---Cc------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999764 33 4999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|++++|+++.++.+++.++++++++++++++......+.. .... .++.++...
T Consensus 1199 lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~----~~~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQ----AEGV-SAIALDSLH---------------- 1257 (4334)
T ss_pred HHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccc----ccCc-eEEeecccc----------------
Confidence 9999999999999999999999999999999999998765443211 1111 112221100
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
........+.....++++++++|||||||.||||+++|+++.+.+.+....+++.++|++++..|++|..++...
T Consensus 1258 -----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~ 1332 (4334)
T PRK05691 1258 -----LDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWEC 1332 (4334)
T ss_pred -----ccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 000000111223467899999999999999999999999999998888778899999999999999999998888
Q ss_pred HHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+....
T Consensus 1333 ~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---------------------------- 1384 (4334)
T PRK05691 1333 FWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA---------------------------- 1384 (4334)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc----------------------------
Confidence 89999999999975 5889999999999999999999999987642000
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccC--CCCCCCCCcCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD--EGDNLSGHVGSP 468 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p 468 (615)
....+||.+++||+++++++.+.|.+.+ +++++|.||+||++..++... ..+....++|+|
T Consensus 1385 ----------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p 1448 (4334)
T PRK05691 1385 ----------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRP 1448 (4334)
T ss_pred ----------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccce
Confidence 0014899999999999999999998877 689999999999986655322 223456789999
Q ss_pred CCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC-------CCeeecccEEEEecCCcEEEE
Q 007169 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 469 ~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~-------~gw~~TGDlg~~~~dG~l~i~ 541 (615)
+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|.. .+||+|||+|++++||.|+++
T Consensus 1449 ~~~~~~~i~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~ 1524 (4334)
T PRK05691 1449 LGNVLCRVLD-AELNLLPPGV---AGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYL 1524 (4334)
T ss_pred eCCCEEEEEC-CCCCCCCCCC---ceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEe
Confidence 9999999999 6677888887 8999999999999999999999999832 359999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeC------HHHHHHHHHHc
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~------~~~l~~~~~~~ 603 (615)
||+|++||+ +|++|+|.|||++|.++|+|.+|+|++.... +.++|++++. .++++++++++
T Consensus 1525 GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~~~~~~~~l~~~l~~~ 1593 (4334)
T PRK05691 1525 GRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAGQEAEAERLKAALAAE 1593 (4334)
T ss_pred cccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 999999998 8999999999999999999999999875533 6899999864 34788888764
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-57 Score=491.43 Aligned_cols=410 Identities=17% Similarity=0.153 Sum_probs=306.7
Q ss_pred cCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc------hHHHHhhhccCCCceEEEEECCC
Q 007169 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT------LNSLLSCLSEVPTVRLIVVIGGI 218 (615)
Q Consensus 145 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~------~~~l~~~~~~~~~l~~ii~~~~~ 218 (615)
++|++|+++++|||+++|++++|+++.++.+++.++|++++++++|++... .+.+.+.....+ .+.++.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 122222221112 2333332211
Q ss_pred CCCCCCCCcCCCceEeeHHHHHhcCccC------CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCc
Q 007169 219 DDQIPSLPITTGVQILTYSNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292 (615)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~ 292 (615)
. .... .......+|+++...+... ........++|+++|+|||||||.||||++||++++..+......+
T Consensus 80 ~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 155 (499)
T PLN03051 80 E-PVAV---PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM 155 (499)
T ss_pred c-ccCC---ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc
Confidence 1 0000 0000123566665322110 1111123568999999999999999999999999887665555556
Q ss_pred ccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcc
Q 007169 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (615)
Q Consensus 293 ~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 370 (615)
++.++|++++.+|++|.+++...+.+++.|+++++++ .++..+++.|+++++|++.++|+++..|++.....
T Consensus 156 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~------ 229 (499)
T PLN03051 156 DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA------ 229 (499)
T ss_pred CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc------
Confidence 7889999999999999999876677899999999886 57889999999999999999999999886521000
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccc
Q 007169 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTET 448 (615)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~--g~~v~~~YG~TE~ 448 (615)
......++||.+++||++++++..+++++.+ +++++++||+||+
T Consensus 230 ----------------------------------~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 275 (499)
T PLN03051 230 ----------------------------------MEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTEL 275 (499)
T ss_pred ----------------------------------cccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccc
Confidence 0000014899999999999999998887743 4789999999998
Q ss_pred cccccccCC-CCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcc--cccccCChhhhhhccCC-----
Q 007169 449 SCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI--FKGYYKDEIQTKEVIDE----- 520 (615)
Q Consensus 449 ~~~~~~~~~-~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v--~~GY~~~~~~t~~~~~~----- 520 (615)
++.++.... .....+++|+|.++++++|+| ++++.++.|+. ..|||+|+|+.+ +.|||+++ .++..++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~-~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~ 352 (499)
T PLN03051 276 ASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQP-CVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYG 352 (499)
T ss_pred cceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCC-cceEEEEecCcCCCCccccCCc-ccceeeecCCccc
Confidence 654332222 223567899999999999999 56666766631 279999999977 58999765 34433321
Q ss_pred ---CCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhc-CCCcceEEEEeeCCC----CeEEEEE---
Q 007169 521 ---DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK-CKFVGQCFVYGDSFN----SALVAIV--- 589 (615)
Q Consensus 521 ---~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~-~p~V~~~~V~g~~~~----~~~va~v--- 589 (615)
.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+ ||+|.+|+|+|.+++ +.++|+|
T Consensus 353 ~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~ 431 (499)
T PLN03051 353 SKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLG 431 (499)
T ss_pred cCCcceeecCCeEEECCCCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcc
Confidence 127999999999999999999999999996 8999999999999986 999999999998764 3688888
Q ss_pred Ee-------CHHHHHHHHHHc
Q 007169 590 SV-------DQDALKAWAASE 603 (615)
Q Consensus 590 v~-------~~~~l~~~~~~~ 603 (615)
++ +.+++.+||+++
T Consensus 432 v~~~~~~~~~~~~l~~~~~~~ 452 (499)
T PLN03051 432 EEKKGFDQARPEALQKKFQEA 452 (499)
T ss_pred eecccccccchHHHHHHHHHH
Confidence 54 246777787653
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-56 Score=482.54 Aligned_cols=431 Identities=23% Similarity=0.288 Sum_probs=352.9
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEE
Q 007169 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (615)
Q Consensus 112 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~ 191 (615)
+.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhccCC-CceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCC
Q 007169 192 VPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGT 270 (615)
Q Consensus 192 ~~~~~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 270 (615)
+......+.+.....+ .++.++..+... .....|++....... ......++.++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQPD----TPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCCC----CCCCCCCcceEEEECCCCCCC
Confidence 9887776655554444 455555543211 112345555432211 122355778999999999999
Q ss_pred CcEEEecHHHHHHHH------HhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhC
Q 007169 271 PKGAVLSHGNLIASV------AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALR 343 (615)
Q Consensus 271 PKgv~~th~~l~~~~------~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~ 343 (615)
||||+++|.++.... ...........++++++.+|++|.+++...+.++..|+++.+.+ +++..+++.+++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 999999987754322 11111222357889999999999999888788999999998887 78999999999999
Q ss_pred CeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCC
Q 007169 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423 (615)
Q Consensus 344 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l 423 (615)
+|++.++|+++..+.+..... ...+| .+++|.+++||+++
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~-----------------------------~~~~~-----------~~~lr~i~~~g~~~ 274 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPEEV-----------------------------RARYD-----------VSSLRVAIHAAAPC 274 (502)
T ss_pred CeEEEehHHHHHHHHhCcccc-----------------------------CCCCC-----------cccceEEEecCCCC
Confidence 999999999998886521000 00011 15899999999999
Q ss_pred cHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCc
Q 007169 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL 502 (615)
Q Consensus 424 ~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~ 502 (615)
+.++.+++.+.++..+++.||+||++++++..... ....+++|.|+ +++++|+| ++++.++.|. .|||+++|+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~ 349 (502)
T PRK08276 275 PVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGE---IGTVYFEMDG 349 (502)
T ss_pred CHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCCC---ceEEEEECCC
Confidence 99999999998999999999999998755544322 24567899999 88999999 5667777776 8999999999
Q ss_pred ccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC
Q 007169 503 IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN 582 (615)
Q Consensus 503 v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~ 582 (615)
++.||+++++.+.+.+..+|||+|||+|+++++|.+++.||+||+||+ +|++|+|.+||.++.++|+|.+++|++..++
T Consensus 350 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~ 428 (502)
T PRK08276 350 YPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDE 428 (502)
T ss_pred ccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCc
Confidence 999999999999999977799999999999999999999999999996 8999999999999999999999999997754
Q ss_pred ---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 583 ---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 583 ---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
+.++++|++.+ +++.++++++
T Consensus 429 ~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~ 461 (502)
T PRK08276 429 EMGERVKAVVQPADGADAGDALAAELIAWLRGR 461 (502)
T ss_pred ccCceEEEEEEECCCCCCChhhHHHHHHHHHhh
Confidence 47999999743 2566777654
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=512.08 Aligned_cols=451 Identities=16% Similarity=0.179 Sum_probs=339.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45578999999999999999999763 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|++++|+++. +++.+++++++++++|++....+.+.+. ...+++++......... ........
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~~~~--~~~~~~~~ 583 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESRDLDL--PDDADVID 583 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccccccC--Ccchhhhh
Confidence 9999999999999985 6899999999999999987766654331 13455554321100000 00001111
Q ss_pred HHHHHhcCccCC--CCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 236 YSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 236 ~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
++++.......+ ....+..++|+++|+|| ||||.||++.++|.+...........+.+.++|++++.+|++|++++.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~ 662 (994)
T PRK07868 584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL 662 (994)
T ss_pred hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence 222111100000 01112246899999999 578888888888877655544444556788999999999999999998
Q ss_pred HHHHH-HHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 314 NQVMT-VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 314 ~~~~~-l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
..+.+ +..|+++++.+ +++..+++.|+++++|+++++|++++.|.+... .
T Consensus 663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~--~-------------------------- 714 (994)
T PRK07868 663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA--F-------------------------- 714 (994)
T ss_pred HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC--C--------------------------
Confidence 76654 55555565554 799999999999999999999999988865200 0
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCCCCCCCCcCCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (615)
. ....+++|.++ | +.+++++.+.+.+.|+ +++++.||+||++...+. ....+.+++|+|+|
T Consensus 715 ---~-----------~~~~~slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~~~~~~svG~p~p 776 (994)
T PRK07868 715 ---V-----------LHGNHPVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VSGAKIGSKGRPLP 776 (994)
T ss_pred ---c-----------cCCCCceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeecccccccccc--cCCCCCcccCCccC
Confidence 0 00014789876 3 3499999999999886 789999999998754432 22346689999999
Q ss_pred Ce-eEEEeec----------CCC--CCCCCCCCCCcceEEEecCcccccccCChhhhh--hccC-CCCeeecccEEEEec
Q 007169 471 AC-EIKLVDV----------PEM--NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK--EVID-EDGWFHTGDIGMWIP 534 (615)
Q Consensus 471 ~~-ev~ivd~----------~~~--~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~--~~~~-~~gw~~TGDlg~~~~ 534 (615)
++ +++|.+. +++ +.++.|+ .|||+++|+.. + +|+.+. ..|. .+|||+|||+|++|+
T Consensus 777 g~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge---~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~ 848 (994)
T PRK07868 777 GAGRVELAAYDPEHDLILEDDRGFVRRAEVNE---VGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDD 848 (994)
T ss_pred CCCceeEEEecCcCCceeecCCceEEEcCCCC---ceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcC
Confidence 98 7877521 112 2234444 89999999864 3 465543 3353 489999999999999
Q ss_pred CCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeC------HHHHHHHHHH
Q 007169 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVD------QDALKAWAAS 602 (615)
Q Consensus 535 dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~------~~~l~~~~~~ 602 (615)
||+|+|+||+||+||+ +|++|+|+|||++|.+||+|.+|+|+|.+++ +.++|+|+++ ++++++||++
T Consensus 849 dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~ 923 (994)
T PRK07868 849 DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALAS 923 (994)
T ss_pred CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHh
Confidence 9999999999999996 7889999999999999999999999998765 4789999864 5789999974
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=480.04 Aligned_cols=439 Identities=22% Similarity=0.275 Sum_probs=350.0
Q ss_pred eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEE
Q 007169 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (615)
Q Consensus 112 ~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~ 191 (615)
+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhccCCCceEEEEECCCCCCCC-----CCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccC
Q 007169 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP-----SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266 (615)
Q Consensus 192 ~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSG 266 (615)
+....+.+.+... ....++.......... ............|+++..... +.....++++++++||||
T Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence 8877665543321 1112222221110000 000001112345666543221 122345789999999999
Q ss_pred CCCCCcEEEecHHHH---HHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhh
Q 007169 267 TTGTPKGAVLSHGNL---IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAAL 342 (615)
Q Consensus 267 TTG~PKgv~~th~~l---~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~ 342 (615)
|||.||+|+++|.+. ..........+++.+++++++.+|++|..+....+.++..|+++++.+ .++..+++.++++
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 242 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERH 242 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHc
Confidence 999999999876553 333333344577889999999999999988877777888999998877 7899999999999
Q ss_pred CCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCC
Q 007169 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422 (615)
Q Consensus 343 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~ 422 (615)
++|++.++|+++..+++...... +.....++|.+++||++
T Consensus 243 ~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------~~~~~~~l~~v~~gg~~ 282 (509)
T PRK12406 243 RITHMHMVPTMFIRLLKLPEEVR----------------------------------------AKYDVSSLRHVIHAAAP 282 (509)
T ss_pred CCeEEEccHHHHHHHHhCchhhc----------------------------------------ccCCCCceeEEEEcCCC
Confidence 99999999999988865210000 00011589999999999
Q ss_pred CcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecC
Q 007169 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP 501 (615)
Q Consensus 423 l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~ 501 (615)
+++++.+++.+.+++.+++.||+||++.+++..... ....+++|.|+++++++++| ++++.++.|. .|||+++|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~ 358 (509)
T PRK12406 283 CPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGE---IGEIYSRIA 358 (509)
T ss_pred CCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCCC---ceEEEEECC
Confidence 999999999999999999999999998765543322 24567899999999999999 5567777776 899999999
Q ss_pred cccc-cccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeC
Q 007169 502 LIFK-GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDS 580 (615)
Q Consensus 502 ~v~~-GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~ 580 (615)
.++. ||+++++.+++.+ .+|||+|||+|++|+||++++.||.||+||+ +|++|+|.+||+++.++|+|.+++|++.+
T Consensus 359 ~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~ 436 (509)
T PRK12406 359 GNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIP 436 (509)
T ss_pred ccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeee
Confidence 9875 9999999888776 7999999999999999999999999999996 89999999999999999999999999977
Q ss_pred CC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 581 FN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 581 ~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+. +.++++|+++ .+++.++++++
T Consensus 437 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~ 468 (509)
T PRK12406 437 DAEFGEALMAVVEPQPGATLDEADIRAQLKAR 468 (509)
T ss_pred ccccCceeEEEEEECCCCCCCHHHHHHHHHHh
Confidence 54 4688888763 46677777653
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=478.52 Aligned_cols=423 Identities=22% Similarity=0.282 Sum_probs=338.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.++.+.+...+...|+..++... ++ .+.+||.||+++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~ 74 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEP---DA----PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL 74 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecC---CC----ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 46888888999999999988654 43 357999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHH-------HHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 159 SAYSFISVPLYDTLGPDA-------VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~-------l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
+++|++++|+++..+.++ +.++++.+++++++++......+.... . .+.
T Consensus 75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----------------------~~~ 130 (545)
T PRK07768 75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-E-----------------------KGI 130 (545)
T ss_pred HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-c-----------------------cCC
Confidence 999999999999887654 456788889999999876443222111 0 012
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCC-cEEEEcCChHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS-DVYISYLPLAHIY 310 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~-d~~l~~lPl~h~~ 310 (615)
.++.++++..... .......++++++|+|||||||.||||+++|++++..+.......++.++ |++++.+|++|.+
T Consensus 131 ~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 207 (545)
T PRK07768 131 RVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM 207 (545)
T ss_pred ceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccch
Confidence 2345666654321 12234567999999999999999999999999999988877776777776 8999999999999
Q ss_pred HHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 311 ERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
++.. .+.++..|+++++++ .++..+.+.++++++|++...|.++..+...+......
T Consensus 208 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------- 270 (545)
T PRK07768 208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------------- 270 (545)
T ss_pred HHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------------
Confidence 9875 445799999998875 37788899999999999988887776655422110000
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH---hCC---ccccccccccccccccccCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG 458 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~---~g~---~v~~~YG~TE~~~~~~~~~~~ 458 (615)
..+ ..+++|.+++||+++++++.+++.+. +|. .+++.||+||++..++.....
T Consensus 271 ----------~~~-----------~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~ 329 (545)
T PRK07768 271 ----------GAF-----------DLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCG 329 (545)
T ss_pred ----------cCC-----------CchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCC
Confidence 000 11489999999999999999988774 555 499999999998655432221
Q ss_pred --------------------------CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChh
Q 007169 459 --------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (615)
Q Consensus 459 --------------------------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~ 512 (615)
....+++|+|+++++++|+| ++++.++.++ .|||+++|+.++.||++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~ 405 (545)
T PRK07768 330 AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRG---VGVIELRGESVTPGYLTMDG 405 (545)
T ss_pred CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCC---EEEEEEccCcccccccCCCC
Confidence 12346899999999999999 6677777776 89999999999999998655
Q ss_pred hhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEee
Q 007169 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGD 579 (615)
Q Consensus 513 ~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~ 579 (615)
.. ..++.+|||+|||+|++|+||.++++||+||+||+ +|++|+|.+||+.+.++|+|.+++|++.
T Consensus 406 ~~-~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~ 470 (545)
T PRK07768 406 FI-PAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVRPGNAVAV 470 (545)
T ss_pred Cc-ccccCCCeeeccceEEEecCCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccccceEEEE
Confidence 44 34447899999999999999999999999999997 8999999999999999999999887764
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=464.50 Aligned_cols=389 Identities=22% Similarity=0.306 Sum_probs=326.0
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcc
Q 007169 115 TYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193 (615)
Q Consensus 115 Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 193 (615)
||.||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcE
Q 007169 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273 (615)
Q Consensus 194 ~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 273 (615)
.....+..... .++.+... +..................++++++++|||||||.||+
T Consensus 81 ~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~ 137 (408)
T TIGR01733 81 ALASRLAGLVL------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKG 137 (408)
T ss_pred chhhhccccCC------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence 76554432210 11111110 00000000000011111357899999999999999999
Q ss_pred EEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC----ChHHHHHHHHhhCCeEEee
Q 007169 274 AVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCS 349 (615)
Q Consensus 274 v~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~----~~~~l~~~i~~~~~t~~~~ 349 (615)
|.+||++++..+......+.+.++|++++.+|++|.+++...+.++..|+++++++. .+..+.+.++++++|.+.+
T Consensus 138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~ 217 (408)
T TIGR01733 138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL 217 (408)
T ss_pred EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence 999999999998888778888899999999999999998888899999999998872 3678889999999999999
Q ss_pred chHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHH
Q 007169 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429 (615)
Q Consensus 350 ~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~ 429 (615)
+|.+++.+.+... ....++|.+++||+++++++.+
T Consensus 218 ~p~~~~~l~~~~~---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~ 252 (408)
T TIGR01733 218 TPSLLALLAAALP---------------------------------------------PALASLRLVILGGEALTPALVD 252 (408)
T ss_pred CHHHHHHHHHhhh---------------------------------------------hcccCceEEEEeCccCCHHHHH
Confidence 9999999876321 0115899999999999999999
Q ss_pred HHHHHhC-CccccccccccccccccccCCCC---C--CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcc
Q 007169 430 FLKICFG-GRVTEGYGMTETSCLISQLDEGD---N--LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI 503 (615)
Q Consensus 430 ~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~---~--~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v 503 (615)
++++.++ +.+++.||+||++..+....... . ...++|.|+++++++|+|++ +..++.|+ .|||+++|+++
T Consensus 253 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~---~Gel~v~~~~~ 328 (408)
T TIGR01733 253 RWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGV---VGELYIGGPGV 328 (408)
T ss_pred HHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCC---ceEEEecCccc
Confidence 9999997 89999999999987664322111 1 26789999999999999954 77777776 89999999999
Q ss_pred cccccCChhhhhhccCCC------C--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEE
Q 007169 504 FKGYYKDEIQTKEVIDED------G--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCF 575 (615)
Q Consensus 504 ~~GY~~~~~~t~~~~~~~------g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~ 575 (615)
+.||+++++.|.+.|..+ | ||+|||+|++|++|++++.||.||+|++ +|++|+|.+||+++..+|.|.+|+
T Consensus 329 ~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~ 407 (408)
T TIGR01733 329 ARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAV 407 (408)
T ss_pred cccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhc
Confidence 999999999999887433 3 9999999999999999999999999996 899999999999999999999987
Q ss_pred E
Q 007169 576 V 576 (615)
Q Consensus 576 V 576 (615)
|
T Consensus 408 v 408 (408)
T TIGR01733 408 V 408 (408)
T ss_pred C
Confidence 5
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=462.29 Aligned_cols=399 Identities=25% Similarity=0.303 Sum_probs=331.3
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEccc
Q 007169 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (615)
Q Consensus 115 Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (615)
||+||.++++++|..|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++..++++++++.++++..
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred chHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEE
Q 007169 195 TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274 (615)
Q Consensus 195 ~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv 274 (615)
..... +. ...+.++................+++++++|||||||.||+|
T Consensus 81 ~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v 129 (436)
T TIGR01923 81 LEEKD-------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAV 129 (436)
T ss_pred ccccc-------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEE
Confidence 32110 00 011112211111111112234568899999999999999999
Q ss_pred EecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHHHHHHHHhhCCeEEeechHHH
Q 007169 275 VLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY 354 (615)
Q Consensus 275 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~~~t~~~~~P~~~ 354 (615)
+++|+++...+......+++.++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.++|+++
T Consensus 130 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~~l 208 (436)
T TIGR01923 130 PHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPTQL 208 (436)
T ss_pred EEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHHHH
Confidence 999999999888887788899999999999999999987778889999999987633 3889999999999999999999
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH
Q 007169 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434 (615)
Q Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 434 (615)
..+.+... + ..++|.+++||+++++++.++++.
T Consensus 209 ~~l~~~~~-------------------------------------------~---~~~l~~~~~~G~~~~~~~~~~~~~- 241 (436)
T TIGR01923 209 NRLLDEGG-------------------------------------------H---NENLRKILLGGSAIPAPLIEEAQQ- 241 (436)
T ss_pred HHHHhCcC-------------------------------------------C---CCceEEEEECCCCCCHHHHHHHHH-
Confidence 88765200 0 038999999999999999998876
Q ss_pred hCCccccccccccccccccccCCCC-CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhh
Q 007169 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (615)
Q Consensus 435 ~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~ 513 (615)
+|+.+++.||+||++..++...... ....++|.|++++++++.+.+. ++ .|||+++|+.++.||+++++.
T Consensus 242 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~------~~---~Gel~v~~~~~~~gy~~~~~~ 312 (436)
T TIGR01923 242 YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK------EG---HGEIMVKGANLMKGYLYQGEL 312 (436)
T ss_pred hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC------CC---ceEEEEECCccchhhCCChhh
Confidence 5999999999999987555433222 2223599999999999944221 13 799999999999999999888
Q ss_pred hhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEE
Q 007169 514 TKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVS 590 (615)
Q Consensus 514 t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv 590 (615)
+...+ .+|||+|||+|++++||.+++.||.+|+||+ +|++|+|.+||+++.++|.|.+++|++.+++ ..++++|+
T Consensus 313 ~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~ 390 (436)
T TIGR01923 313 TPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIV 390 (436)
T ss_pred hhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEE
Confidence 87766 6899999999999999999999999999996 8999999999999999999999999998754 46788888
Q ss_pred eC----HHHHHHHHHHc
Q 007169 591 VD----QDALKAWAASE 603 (615)
Q Consensus 591 ~~----~~~l~~~~~~~ 603 (615)
++ .+.+.++++++
T Consensus 391 ~~~~~~~~~l~~~l~~~ 407 (436)
T TIGR01923 391 SESDISQAKLIAYLTEK 407 (436)
T ss_pred ECCCCCHHHHHHHHHHh
Confidence 64 46677887653
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-54 Score=450.72 Aligned_cols=451 Identities=21% Similarity=0.293 Sum_probs=363.9
Q ss_pred HHHHHHHHHh-cCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHh
Q 007169 82 HDNFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA 160 (615)
Q Consensus 82 ~~~l~~~a~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 160 (615)
+.++.+..+. .++.++++++ +...++...+||.|+.+++.++|..|.+.|+++||+|++++|+.+|++++++||.+
T Consensus 67 ~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r 143 (626)
T KOG1175|consen 67 YNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACAR 143 (626)
T ss_pred HhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhh
Confidence 3444555444 4888999887 33333334489999999999999999988999999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchH---------HHHhhhccCCC-----ceEEEEECCCCCCCCCCC
Q 007169 161 YSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN---------SLLSCLSEVPT-----VRLIVVIGGIDDQIPSLP 226 (615)
Q Consensus 161 ~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~l~~~~~~~~~-----l~~ii~~~~~~~~~~~~~ 226 (615)
+|++.+++...++++++...+++++++++|+.+.... .+.+....++. ...+++.+.
T Consensus 144 ~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 214 (626)
T KOG1175|consen 144 IGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR--------- 214 (626)
T ss_pred cCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc---------
Confidence 9999999999999999999999999999999764321 22222222211 111111111
Q ss_pred cCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHH-HHHHHhhccCcccCCCcEEEEcCC
Q 007169 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLP 305 (615)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lP 305 (615)
.+.+.|++++..... ..++.+.+.+|+.+|+|||||||.|||+.+|+... +..+......+.+.++|+++++.-
T Consensus 215 ----~~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d 289 (626)
T KOG1175|consen 215 ----NRDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASD 289 (626)
T ss_pred ----cccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecc
Confidence 113456666554433 23466778899999999999999999999998874 455555566789999999999999
Q ss_pred hHHHHHHHHH-HHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q 007169 306 LAHIYERANQ-VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (615)
Q Consensus 306 l~h~~~~~~~-~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (615)
+.++.+.... +.+|+.|++++++. +++..+++.+.++++|++++.|+.++.+..........
T Consensus 290 ~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~-------------- 355 (626)
T KOG1175|consen 290 LGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTS-------------- 355 (626)
T ss_pred cCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccc--------------
Confidence 9999988774 56999999999987 58899999999999999999999999876532111110
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCC-
Q 007169 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD- 459 (615)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~- 459 (615)
++ | .+||.+.+.|+|+.++..+++.+.++. +|++.||+||+++.+....+..
T Consensus 356 ---------------~~---~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~ 409 (626)
T KOG1175|consen 356 ---------------YS---L--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL 409 (626)
T ss_pred ---------------cc---c--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC
Confidence 00 0 379999999999999999999999987 6999999999998887776666
Q ss_pred -CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecC---cccccccCChhh-hhhcc-CCCCeeecccEEEEe
Q 007169 460 -NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQ-TKEVI-DEDGWFHTGDIGMWI 533 (615)
Q Consensus 460 -~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~---~v~~GY~~~~~~-t~~~~-~~~gw~~TGDlg~~~ 533 (615)
..+++.|.|.+++.+.|.|. +++..+.+. ..|||+++.+ +.+++||+|++. .+..| .-.|+|.|||.|++|
T Consensus 410 p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~--~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd 486 (626)
T KOG1175|consen 410 PIKPGSAGKPFPGYDVQILDE-NGNELPPST--GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRD 486 (626)
T ss_pred CcCccccCCCCCCcceEEECC-CCCCcCCCC--ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEc
Confidence 78999999999999999994 666666553 3899999974 679999999994 33334 127999999999999
Q ss_pred cCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH
Q 007169 534 PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ 593 (615)
Q Consensus 534 ~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~ 593 (615)
+||++++.||.||+|++ +|+++.+.|||+++.+||.|.|++|+|.+++ +.++|||++.+
T Consensus 487 ~dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~ 548 (626)
T KOG1175|consen 487 EDGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKS 548 (626)
T ss_pred CCceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcC
Confidence 99999999999999997 7999999999999999999999999998865 68999999854
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-52 Score=440.35 Aligned_cols=362 Identities=14% Similarity=0.149 Sum_probs=309.8
Q ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEc
Q 007169 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192 (615)
Q Consensus 113 ~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~ 192 (615)
.+||+||.++++++|+.|. .|+++|++|+|+++|+++|+++++||+++|++++|+++..+.+++..++++++++.++++
T Consensus 8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~ 86 (414)
T PRK08308 8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG 86 (414)
T ss_pred eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence 5999999999999999985 689999999999999999999999999999999999999999999999999999999986
Q ss_pred ccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCc
Q 007169 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272 (615)
Q Consensus 193 ~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 272 (615)
..... . . ......++++++++|||||||.||
T Consensus 87 ~~~~~-----------~------------------------~--------------~~~~~~~~~~~~i~~TSGtTG~PK 117 (414)
T PRK08308 87 ESDFT-----------K------------------------L--------------EAVNYLAEEPSLLQYSSGTTGEPK 117 (414)
T ss_pred Ccccc-----------c------------------------c--------------cCCCCCCCCceEEEECCCCCCCCc
Confidence 53100 0 0 001235678999999999999999
Q ss_pred EEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeec
Q 007169 273 GAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSV 350 (615)
Q Consensus 273 gv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~ 350 (615)
||++||+++.+.+......+.+..+|+.+..+|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++
T Consensus 118 gv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~ 197 (414)
T PRK08308 118 LIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAV 197 (414)
T ss_pred EEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcC
Confidence 999999999988887777778888999999999999999865 566899999998877 789999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHH
Q 007169 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430 (615)
Q Consensus 351 P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~ 430 (615)
|.++..+.+.... ..+++.+++||+++++++.++
T Consensus 198 P~~~~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~l~~~~~~~ 231 (414)
T PRK08308 198 PLMLHILGRLLPG----------------------------------------------TFQFHAVMTSGTPLPEAWFYK 231 (414)
T ss_pred HHHHHHHHhcCCc----------------------------------------------cccccEEEEccCCCCHHHHHH
Confidence 9999887652100 026788999999999999999
Q ss_pred HHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCC
Q 007169 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (615)
Q Consensus 431 ~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~ 510 (615)
+++. +.++++.||+||++++... ......+++|+|+|++++++.+. .++ .|||++++
T Consensus 232 ~~~~-~~~~~~~YG~tE~~~~~~~--~~~~~~~~~G~p~~~~~~~~~~~-------~~~---~gel~v~~---------- 288 (414)
T PRK08308 232 LRER-TTYMMQQYGCSEAGCVSIC--PDMKSHLDLGNPLPHVSVSAGSD-------ENA---PEEIVVKM---------- 288 (414)
T ss_pred HHHh-CChhhhccCccccCCeeec--CCCCCCCccCccCCCeEEEEecC-------CCC---CceEEEEc----------
Confidence 9886 6789999999999864432 22345678999999999998751 233 79999975
Q ss_pred hhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEE
Q 007169 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVA 587 (615)
Q Consensus 511 ~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va 587 (615)
.++||+|||+|++|+||+++++||.||+||+ +|++|+|.+||+++.++|+|.+++|++.+++ +.+++
T Consensus 289 ---------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~ 358 (414)
T PRK08308 289 ---------GDKEIFTKDLGYKSERGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKA 358 (414)
T ss_pred ---------CCceEECCceEEECCCccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEE
Confidence 3689999999999999999999999999997 8999999999999999999999999997754 47788
Q ss_pred EEEe----CHHHHHHHHHHc
Q 007169 588 IVSV----DQDALKAWAASE 603 (615)
Q Consensus 588 ~vv~----~~~~l~~~~~~~ 603 (615)
++++ +.+++++|++++
T Consensus 359 ~v~~~~~~~~~~l~~~l~~~ 378 (414)
T PRK08308 359 KVISHEEIDPVQLREWCIQH 378 (414)
T ss_pred EEEeCCCCCHHHHHHHHHHh
Confidence 8875 457888888764
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=403.01 Aligned_cols=452 Identities=23% Similarity=0.254 Sum_probs=347.1
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|++++|..+++++|+++|+++. +. .+.+||+|++++++++|+.|...|++.||.|+++++|++|++.+.|
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl 147 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL 147 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence 5579999999999999999999986 22 3569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCc-eEEEEECCCCCCCCCCCcCCCceEee
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+.+++|++...||.++..+.+.|.|..++++++|++.+..+.+.++.+.+... -.++..++.... . ...+
T Consensus 148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~-------~--g~~~ 218 (649)
T KOG1179|consen 148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP-------D--GIES 218 (649)
T ss_pred hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC-------c--hHHH
Confidence 99999999999999999999999999999999999999888887774332211 123333322110 0 1112
Q ss_pred HHHHHhcCccCCCC---CCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHH
Q 007169 236 YSNLLSQGRSNLQP---FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (615)
Q Consensus 236 ~~~l~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (615)
+.+.++.....+.+ ....+-.++++.+|||||||.||++++||..+...+......++++++|+++..+||+|..+.
T Consensus 219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ 298 (649)
T KOG1179|consen 219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAG 298 (649)
T ss_pred HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHH
Confidence 22222222222211 223455789999999999999999999999998888877778999999999999999999998
Q ss_pred HHHH-HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcC
Q 007169 313 ANQV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (615)
Q Consensus 313 ~~~~-~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (615)
+..+ .++..|+++++-. ++...++++..++++|++--+-.+.+-|++.....-+
T Consensus 299 ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e------------------------ 354 (649)
T KOG1179|consen 299 ILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE------------------------ 354 (649)
T ss_pred HHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh------------------------
Confidence 8755 5899999999977 9999999999999999999998888888763211111
Q ss_pred CCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCCCCcCCCC
Q 007169 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (615)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (615)
-..++|.++ |.-+.+++++.|.++||.. |.+.||+||+....... +.+.|.+|...
T Consensus 355 ------------------r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~---d~~vGA~G~~~ 411 (649)
T KOG1179|consen 355 ------------------RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY---DGRVGACGFMS 411 (649)
T ss_pred ------------------cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee---cCccccccchh
Confidence 115788877 5668899999999999876 99999999986544332 44455555421
Q ss_pred C----CeeEEE--eecCCCCCC-------CCCCCCCcceEEE--ecCcc---cccccCChhhhhhcc------CCCCeee
Q 007169 470 A----ACEIKL--VDVPEMNYT-------SEDQPCPRGEICV--RGPLI---FKGYYKDEIQTKEVI------DEDGWFH 525 (615)
Q Consensus 470 ~----~~ev~i--vd~~~~~~~-------~~~~~~~~GEi~v--rg~~v---~~GY~~~~~~t~~~~------~~~gw~~ 525 (615)
- -..+++ +|++++++. ..-.|.+.|.+.- .-... |.||.+..++|++.. ..|-||.
T Consensus 412 ~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~ 491 (649)
T KOG1179|consen 412 RLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFN 491 (649)
T ss_pred hhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEe
Confidence 1 112333 344444432 1122334665432 22333 899999888887654 2455999
Q ss_pred cccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---C-eEEEEEEeC
Q 007169 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---S-ALVAIVSVD 592 (615)
Q Consensus 526 TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~-~~va~vv~~ 592 (615)
|||+-.+|+.|+||+.||..|.|.. .||||+..|||.++..+.+++||.|+|..-. + .-.|.|+.+
T Consensus 492 tGDlLv~D~~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~ 561 (649)
T KOG1179|consen 492 TGDLLVADELGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLD 561 (649)
T ss_pred eCcEEEEecCCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEec
Confidence 9999999999999999999999998 7999999999999999999999999996532 2 345666643
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=377.81 Aligned_cols=411 Identities=21% Similarity=0.203 Sum_probs=335.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...++.+.|...+.+.|++.++... + ..+||+|+.++++++|+.|.+.|+.+++.|+++.+.++++++++
T Consensus 224 ~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~ 294 (642)
T COG1020 224 PLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVAL 294 (642)
T ss_pred CccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHH
Confidence 34578999999999999999888653 2 35999999999999999999999999999999998899999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+|++++|+.++|+++.++.+++.+++++++++.+++......... .++. +..+..
T Consensus 295 l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~----------------- 349 (642)
T COG1020 295 LAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG----LALDDA----------------- 349 (642)
T ss_pred HHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc----cccccc-----------------
Confidence 999999999999999999999999999999999999833211100 0010 111110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
........+. .....+++.++++|||||||.||||+.+|+++.+...+....+.+...|+++...++.+.......
T Consensus 350 ---~~~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~ 425 (642)
T COG1020 350 ---LSEIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEI 425 (642)
T ss_pred ---cccCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHH
Confidence 0000000000 122456899999999999999999999999999987777777899999999999999888888888
Q ss_pred HHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
+.++..|+++++.. .++..+.+.+.++++|++..+|.++..+........
T Consensus 426 f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-------------------------- 479 (642)
T COG1020 426 FGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD-------------------------- 479 (642)
T ss_pred HHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc--------------------------
Confidence 99999999999876 689999999999999999999999988876300000
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh--CCccccccccccccccccccCCCCCC--CCCcCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEGDNL--SGHVGS 467 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~--~~~vG~ 467 (615)
. ......+|.+++||+.++..+...+.... ...+.+.||+||+............. ..++|.
T Consensus 480 ~--------------~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~ 545 (642)
T COG1020 480 L--------------ISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGR 545 (642)
T ss_pred c--------------cCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcce
Confidence 0 00002599999999999999999887765 46899999999966544433222222 468999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (615)
|+++++++|+| +....++.+. .||+++.|.++.+||+++|+.|.+.|..+.+|+|||++++++||.+.++||.|++
T Consensus 546 p~~n~~~~ild-~~~~~~p~gv---~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~q 621 (642)
T COG1020 546 PVANTQLYILD-QGLRPLPLGV---PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQ 621 (642)
T ss_pred eeCCCeEEEEC-CCCCcCCCCC---CeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccce
Confidence 99999999999 7777888887 7999999999999999999999999955459999999999999999999999999
Q ss_pred EEcCCeeeechHHHHHHHhcCC
Q 007169 548 FKLAQGEYIAAEKIENVYAKCK 569 (615)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p 569 (615)
+|+ +|++|.+.+||..+.++|
T Consensus 622 vki-~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 622 VKI-RGFRIELGEIEAALAEQP 642 (642)
T ss_pred eEe-ceEecCcHHHHHHHhcCC
Confidence 998 899999999999998875
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=349.47 Aligned_cols=276 Identities=29% Similarity=0.355 Sum_probs=229.1
Q ss_pred CCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec---
Q 007169 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--- 329 (615)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~--- 329 (615)
..++|+++++|||||||.||||+++|+++...+......+ ...++++..+|++|.+++...+.+++.|++++++.
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 4578999999999999999999999999988877654433 35678899999999999887788899999888732
Q ss_pred -CChHHHHHHHHhhC--CeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHH
Q 007169 330 -GDNMKLMDDMAALR--PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406 (615)
Q Consensus 330 -~~~~~l~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 406 (615)
+++..+++.+++++ .++...+|..+..+..... .
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~--------------------------------~----------- 146 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA--------------------------------A----------- 146 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc--------------------------------c-----------
Confidence 68999999999998 5666778887765543100 0
Q ss_pred hhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCC
Q 007169 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (615)
Q Consensus 407 ~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~ 486 (615)
.....++|.+++||+++++++.+++.+ +++++++.||+||++..+. ..|.|++++++++.
T Consensus 147 ~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~--------- 206 (358)
T PRK07824 147 TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVE--------- 206 (358)
T ss_pred cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEec---------
Confidence 000148999999999999999999886 5999999999999875432 35899999999984
Q ss_pred CCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHh
Q 007169 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYA 566 (615)
Q Consensus 487 ~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~ 566 (615)
.|||+++|+.++.||+++++.+ .|..+|||+|||+|++ ++|.|+++||.||+||+ +|++|+|.+||+++.
T Consensus 207 ------~Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~ 276 (358)
T PRK07824 207 ------DGRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAIST-GGLTVLPQVVEAALA 276 (358)
T ss_pred ------CCEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEE-CCEEECHHHHHHHHH
Confidence 3999999999999999998754 4557899999999999 89999999999999997 899999999999999
Q ss_pred cCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 567 KCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 567 ~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+|.+|+|+|.+++ +.++|+|+++ .+++.++++++
T Consensus 277 ~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~ 322 (358)
T PRK07824 277 THPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVART 322 (358)
T ss_pred hCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhh
Confidence 9999999999997654 5788888753 46778887754
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=304.77 Aligned_cols=254 Identities=20% Similarity=0.172 Sum_probs=199.2
Q ss_pred CCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccC--CCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec-CC
Q 007169 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GD 331 (615)
Q Consensus 256 ~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~--~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~-~~ 331 (615)
+..++++|||||||.||||++||+++++.+......+++. +.|++++.+|++|.+++.+ .+.++..|+++++.+ ++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 4578899999999999999999999998887766655654 3468999999999999865 566888999998876 67
Q ss_pred hHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCC
Q 007169 332 NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411 (615)
Q Consensus 332 ~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~ 411 (615)
+..+++.++.. |+++++|++|+.+.+.. ...+
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----------------------------------------------~~l~ 206 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----------------------------------------------YRLP 206 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC----------------------------------------------cCCC
Confidence 78888877643 89999999998886520 0003
Q ss_pred cEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCC
Q 007169 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (615)
Q Consensus 412 ~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~ 490 (615)
+++. ++||+++++++.+.+++. +. .+++.||+||++++++... .+..|.|+|+.++++ + + +.
T Consensus 207 slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~~~~-~--~------~~- 269 (386)
T TIGR02372 207 GVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLACFA-D--T------LS- 269 (386)
T ss_pred ccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCccccC-C--C------cc-
Confidence 5665 678999999999999875 64 6999999999987554322 234577888776643 1 1 10
Q ss_pred CCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCC
Q 007169 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKF 570 (615)
Q Consensus 491 ~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~ 570 (615)
+ .|+ ..|++|||+|++|++|+|+|+||+||+||+ +|++|+|.+||+++.+||+
T Consensus 270 ----~---~g~-------------------~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~ 322 (386)
T TIGR02372 270 ----S---AGL-------------------ARRLDLQDRLAWDKDGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPR 322 (386)
T ss_pred ----C---CCc-------------------cceeecCceEEEcCCCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCC
Confidence 0 021 237899999999999999999999999996 8999999999999999999
Q ss_pred cceEEEEeeCCCCeEEEEEEeCH--------HHHHHHHHHc
Q 007169 571 VGQCFVYGDSFNSALVAIVSVDQ--------DALKAWAASE 603 (615)
Q Consensus 571 V~~~~V~g~~~~~~~va~vv~~~--------~~l~~~~~~~ 603 (615)
|.+++|... .+.++|+|++++ +++.+|++++
T Consensus 323 V~~~~v~~~--g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~ 361 (386)
T TIGR02372 323 VRAAAVRLD--GRRLKAFIVVAEDADEAELEIELRATAARH 361 (386)
T ss_pred ceEEEEEcC--CceEEEEEEECCCCChHHHHHHHHHHHHHh
Confidence 999999743 468899998753 3677787765
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=297.63 Aligned_cols=279 Identities=16% Similarity=0.197 Sum_probs=209.2
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhh---ccCcccCCCcEEEEcCChHHHHH-HHHHHHHHHhCcEEEEec
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPLAHIYE-RANQVMTVYSGVAVGFYQ 329 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~---~~~~~~~~~d~~l~~lPl~h~~~-~~~~~~~l~~G~~i~~~~ 329 (615)
.+++++.++|||||||.||++.+||+++....... ....++.++|++++..+..+..+ +...+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 45678899999999999999999999987654332 23357889999988766554333 223445777899888765
Q ss_pred -CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhh
Q 007169 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408 (615)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 408 (615)
.++..+++.|++++||+++++|+++..|++..... +..+
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~-------------------------~~~~--------------- 192 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRM-------------------------GIDP--------------- 192 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHc-------------------------CCCc---------------
Confidence 67899999999999999999999999887642211 0000
Q ss_pred cCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCC--CCeeEEEeecCCCCCCC
Q 007169 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNYTS 486 (615)
Q Consensus 409 ~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~ev~ivd~~~~~~~~ 486 (615)
...++|.+++||++++++..+.+++.||+++++.||+||+++.......... ..|.++ +.+.++|+|++++..++
T Consensus 193 ~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~~---~~g~~~~~~~~~~eivd~~~g~~v~ 269 (422)
T TIGR02155 193 AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVET---QDGLHIWEDHFYPEIIDPHTGEVLP 269 (422)
T ss_pred ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccccc---CCCceEecCeeEEEEECCCCCCCCC
Confidence 0037999999999999999999999999999999999998532111111111 123333 35778899977788888
Q ss_pred CCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC-C-----cEEEEccCCCeEEcCCeeeechHH
Q 007169 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-G-----RLKIIDRKKNIFKLAQGEYIAAEK 560 (615)
Q Consensus 487 ~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G-----~l~i~GR~~d~ikl~~G~~v~p~~ 560 (615)
+|+ .|||++++. +++.| ..+||+|||+|+++++ | .++|.||.||+||+ +|++|+|.+
T Consensus 270 ~Ge---~Gelvvt~~------------~~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~-~G~~v~p~e 332 (422)
T TIGR02155 270 DGE---EGELVFTTL------------TKEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLII-RGVNVFPTQ 332 (422)
T ss_pred CCC---eeEEEEecC------------Ccccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEE-CCEEECHHH
Confidence 887 899999973 34455 5789999999999876 4 57899999999997 799999999
Q ss_pred HHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 561 IENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
||+++.++|+|...+.+..... +.+++.|++.
T Consensus 333 ie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~ 367 (422)
T TIGR02155 333 LEEVILKMDELSPHYQLELTRNGHMDELTLKVELK 367 (422)
T ss_pred HHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEe
Confidence 9999999999984444433222 3666666654
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-27 Score=251.22 Aligned_cols=457 Identities=16% Similarity=0.154 Sum_probs=316.2
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
.++.|+|+++++++||.+|+... ++.+.+...+||++|.+++.+++..|... -+++||.|+++++++.|++++++|
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~ 846 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA 846 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence 68999999999999999999887 77777788999999999999999999977 589999999999999999999999
Q ss_pred HHhcCCeEEecCCCC------CHHHHHHHHHhccceEEEEcccchHHHHhhhc----cCCCceEEEEECCCCCCCCCCCc
Q 007169 158 CSAYSFISVPLYDTL------GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGGIDDQIPSLPI 227 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~------~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~~~~~~~~~~~ 227 (615)
|+.+|.+++|+.|.- ..+.+..|++.+++++|+++......+...-. +......++.+++.....
T Consensus 847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~----- 921 (1363)
T KOG3628|consen 847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETI----- 921 (1363)
T ss_pred HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhh-----
Confidence 999999999998864 34578899999999999999765443322111 001111222222211000
Q ss_pred CCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChH
Q 007169 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307 (615)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~ 307 (615)
......+.+. ....++.-.+++.+|++-+.--++|.--|+.+||.++++.+....+...+.++.-++..++.+
T Consensus 922 -----~k~~~~~~k~--~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~ 994 (1363)
T KOG3628|consen 922 -----RKRKKNIKKL--NTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPY 994 (1363)
T ss_pred -----hhhhhhhhcc--CCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCc
Confidence 0001111111 011122234578899999988899999999999999999999999888888888888888888
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q 007169 308 HIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYN 381 (615)
Q Consensus 308 h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 381 (615)
-..|+.. .++.++.|....+++ .++..++..++.+++.-.+.+-..++.+.+....+.+.. .....+
T Consensus 995 sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl---~~~gnn---- 1067 (1363)
T KOG3628|consen 995 SGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENL---SKRGNN---- 1067 (1363)
T ss_pred cchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchh---hhhhcc----
Confidence 8888765 677899999988776 689999999999999988888777777665432222111 000000
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh---CC---ccccccccccccccccc-
Q 007169 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQ- 454 (615)
Q Consensus 382 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~---g~---~v~~~YG~TE~~~~~~~- 454 (615)
. ++ ..++..-+.....+.+-|.+.| |. .+--.|+.-=...++..
T Consensus 1068 -----------~-----------------s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~ 1118 (1363)
T KOG3628|consen 1068 -----------T-----------------SS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRS 1118 (1363)
T ss_pred -----------c-----------------cc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhcc
Confidence 0 01 1122222222222233222222 11 11112221111000000
Q ss_pred --------------------------cCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCccccccc
Q 007169 455 --------------------------LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (615)
Q Consensus 455 --------------------------~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~ 508 (615)
..+........|...+++++.|+++++..++.+|+ .||||++|..-+.+|+
T Consensus 1119 ~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge---~GEIW~~S~hnA~~~~ 1195 (1363)
T KOG3628|consen 1119 YSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE---LGEIWVNSAHNASCSF 1195 (1363)
T ss_pred ccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC---cceEEecccccccccc
Confidence 00001112234888899999999999999999997 9999999999998887
Q ss_pred CChh-hhhhcc---------CCCCeeecccEEEEe------cC----CcEEEEccCCCeEEcCCeeeechHHHHHHH-hc
Q 007169 509 KDEI-QTKEVI---------DEDGWFHTGDIGMWI------PG----GRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AK 567 (615)
Q Consensus 509 ~~~~-~t~~~~---------~~~gw~~TGDlg~~~------~d----G~l~i~GR~~d~ikl~~G~~v~p~~IE~~l-~~ 567 (615)
+--+ .....| +..+|.||||+|++. .+ .-||++|-.++.+.+ +|-+.+|.+||..+ +.
T Consensus 1196 ~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~v 1274 (1363)
T KOG3628|consen 1196 TIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERV 1274 (1363)
T ss_pred ccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHh
Confidence 6321 111112 245699999999985 22 259999999999998 89999999999998 56
Q ss_pred CCCcceEEEEeeCCCCeEEEEEEeC
Q 007169 568 CKFVGQCFVYGDSFNSALVAIVSVD 592 (615)
Q Consensus 568 ~p~V~~~~V~g~~~~~~~va~vv~~ 592 (615)
||.|.+|+|+-.. ..+|.+|...
T Consensus 1275 H~~I~~cavF~~~--glvVvviE~~ 1297 (1363)
T KOG3628|consen 1275 HPSIGGCAVFQAT--GLVVVVIECH 1297 (1363)
T ss_pred cccccceeeEeeC--CeEEEEEEec
Confidence 9999999998765 3455555544
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=218.96 Aligned_cols=221 Identities=13% Similarity=0.085 Sum_probs=165.1
Q ss_pred HHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHhHHHHHHHHHhcCC
Q 007169 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163 (615)
Q Consensus 85 l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~ 163 (615)
|...++++|+++|+++. +...++.+.+||+|+.++++++|++|.+ .|+++||+|+|+++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46678899999999764 2221123569999999999999999998 7999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECC--CCCCCCCCCcCCCceEeeHHHHHh
Q 007169 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG--IDDQIPSLPITTGVQILTYSNLLS 241 (615)
Q Consensus 164 v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 241 (615)
+++|++ ++++++++++.+..+.+. .+ +.++.+.. .... ....... .+.+|.+...
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~ 135 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRR-VAGELPP--GVIDFAPEVR 135 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccC-CCCCCCC--cccchhhhhh
Confidence 999995 789999999988766642 12 22333311 1100 0000011 2246666554
Q ss_pred cCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-HHHHHH
Q 007169 242 QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVY 320 (615)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~ 320 (615)
.......+.....++|++.|+||||| +|++++... ...++.++|+++ .+|++|++|+.. .+.+++
T Consensus 136 ~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~ 201 (227)
T TIGR03089 136 VHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLA 201 (227)
T ss_pred ccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhc
Confidence 32222222213567999999999986 566665554 446788999999 999999999875 567899
Q ss_pred hCcEEEEec-CChHHHHHHHHhhCCe
Q 007169 321 SGVAVGFYQ-GDNMKLMDDMAALRPT 345 (615)
Q Consensus 321 ~G~~i~~~~-~~~~~l~~~i~~~~~t 345 (615)
.|+++++++ +++..+++.|+++|+|
T Consensus 202 ~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 202 AGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred cCceEEEecCCCHHHHHHHHHhhcCC
Confidence 999999988 9999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=238.57 Aligned_cols=258 Identities=17% Similarity=0.168 Sum_probs=187.2
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc---CcccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ 329 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~ 329 (615)
..++++.+.|||||||.||+|.+||.++......... ..++.++|+++...|..+..+... .+.++..|++++. .
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~-~ 162 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP-E 162 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc-C
Confidence 4568899999999999999999999998766544332 247889999999988887655443 3456778887653 3
Q ss_pred CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhc
Q 007169 330 GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409 (615)
Q Consensus 330 ~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 409 (615)
......++.|+++++|.++++|+.+..+++.+... +..+ .
T Consensus 163 ~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~-------------------------g~~~---------------~ 202 (445)
T TIGR03335 163 GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAE-------------------------GIDP---------------A 202 (445)
T ss_pred CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHc-------------------------CCCc---------------c
Confidence 34456788999999999999999887776532111 0000 0
Q ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCC--CCeeEEEeecCCCCCCCC
Q 007169 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNYTSE 487 (615)
Q Consensus 410 g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~ev~ivd~~~~~~~~~ 487 (615)
..++|.+++||++++++..+.+++.||+++++.||+||++....+ .. ..|..+ +.+.+.|+|++++.++++
T Consensus 203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c-~~------~~g~h~~~d~~~vEIvDp~~~~~vp~ 275 (445)
T TIGR03335 203 ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGEC-QA------VAGLHVPEDLVHLDVYDPRHQRFLPD 275 (445)
T ss_pred cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEe-cC------CCCccccCCceEEEEEcCCCCCCCcC
Confidence 137999999999999999999999999999999999998522211 11 123333 457899999766677788
Q ss_pred CCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec-C----C----cEEEEccCCCeEEcCCeeeech
Q 007169 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-G----G----RLKIIDRKKNIFKLAQGEYIAA 558 (615)
Q Consensus 488 ~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-d----G----~l~i~GR~~d~ikl~~G~~v~p 558 (615)
|+ .|||++++-.-.. +++.+ .===|+|||++++.. + | .+..+||.|||+++ +|.+|+|
T Consensus 276 Ge---~GELvvT~L~~~~--------~r~~~-PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~-~g~~~~p 342 (445)
T TIGR03335 276 GE---CGRIVLTTLLKPG--------ERCGS-LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWI-SGVPFNR 342 (445)
T ss_pred CC---ceEEEEEecCCCC--------ccCCc-eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEE-CCEEeCH
Confidence 87 8999998743100 00000 000289999999742 2 2 24557999999999 8999999
Q ss_pred HHHHHHHhcC---CCcc
Q 007169 559 EKIENVYAKC---KFVG 572 (615)
Q Consensus 559 ~~IE~~l~~~---p~V~ 572 (615)
.+||+++.++ +++.
T Consensus 343 ~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 343 VDVERAVFQRENMDSLT 359 (445)
T ss_pred HHHHHHHhccCCCCCCC
Confidence 9999999995 5553
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=240.75 Aligned_cols=467 Identities=16% Similarity=0.123 Sum_probs=289.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
+.++.+.|.+.+...|...+..+.+... ..+.....||++.....+.+++.|...|..+|+.|++++..+.++++..++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~ 113 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPTAS-ESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA 113 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeeccc-ccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence 4578888999999999999988764321 223345689999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCC----HHHHHHH---HHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCC
Q 007169 158 CSAYSFISVPLYDTLG----PDAVKYI---VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~----~~~l~~i---l~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (615)
.+++|..+++++|.++ ++.+..+ +......++ .. .+.+....... . ....
T Consensus 114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~--l~i~~~~~~~~---~----------------~~~s 170 (1032)
T KOG1178|consen 114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RR--LNIIDILLNSL---F----------------PKLS 170 (1032)
T ss_pred hhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hh--hhhHHHHhhcc---c----------------cccc
Confidence 9999999999999998 2211111 111111100 00 00000000000 0 0000
Q ss_pred ce--EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCCh-H
Q 007169 231 VQ--ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL-A 307 (615)
Q Consensus 231 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl-~ 307 (615)
+. .-.|..+.... ........-+|..+++.||||+||.||||..+|..+.....+....+....++.+-....+ +
T Consensus 171 v~~~~~~f~~~~~~~--~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~ 248 (1032)
T KOG1178|consen 171 VETIADSFQMVLHNE--DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYF 248 (1032)
T ss_pred hhhccchhhhhhccC--CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeec
Confidence 00 00111111111 0112223457778999999999999999999999999999998888887777765222222 2
Q ss_pred HHHHHHHHHHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 007169 308 HIYERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (615)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 383 (615)
|..-.-.....++.|+.+..+. ..+..+.+.+.+++++.++.+|++.+.+.......+. .
T Consensus 249 ~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~----------------~ 312 (1032)
T KOG1178|consen 249 DDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLP----------------L 312 (1032)
T ss_pred ccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchh----------------h
Confidence 2222222334455565555443 3478999999999999999999998888763211100 0
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC---
Q 007169 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--- 459 (615)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~--- 459 (615)
+..... .+++... -+.|+....+|+|....+...+...+ ..-...-|+.|+..+.........
T Consensus 313 l~~~~~------------~~dl~~~-~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ 379 (1032)
T KOG1178|consen 313 LEHAFS------------LSDLLTK-RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKV 379 (1032)
T ss_pred hhhhhh------------ccccccc-chhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccc
Confidence 000000 0000000 04899999999999999888544433 112223388888665444322111
Q ss_pred -CCC---C-------CcCCCCCCeeEEEeecCCCCCCCCCCCC-CcceEEEecCcccccccCChhhhhhcc-----CCCC
Q 007169 460 -NLS---G-------HVGSPNAACEIKLVDVPEMNYTSEDQPC-PRGEICVRGPLIFKGYYKDEIQTKEVI-----DEDG 522 (615)
Q Consensus 460 -~~~---~-------~vG~p~~~~ev~ivd~~~~~~~~~~~~~-~~GEi~vrg~~v~~GY~~~~~~t~~~~-----~~~g 522 (615)
... . .+|.+... .+.. ..+...+.+... ..|+.+.-+..+..| ++.++.....+ ..+.
T Consensus 380 ll~~~~v~~~p~~~~~~~~~~~~---~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r 454 (1032)
T KOG1178|consen 380 LLTNENVYSVPKFDSIIGSLTVL---ESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKAR 454 (1032)
T ss_pred eecceeEEeccchhhccCCCcce---eeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhh
Confidence 000 0 11111111 1111 111111111100 022222233444455 34454433332 1345
Q ss_pred eeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------
Q 007169 523 WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------ 593 (615)
Q Consensus 523 w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------ 593 (615)
.|+|||.|+..++|.+.+.||.|++||+ +|.++...+|+..+..||.|.++.+.+..++ +.++|||++..
T Consensus 455 ~y~tgD~gr~l~ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~ 533 (1032)
T KOG1178|consen 455 IYRTGDNGRSLKNGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSVL 533 (1032)
T ss_pred cccccccceeecCCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCchh
Confidence 8999999999999999999999999997 8999999999999999999999998886544 47999999742
Q ss_pred -HHHHHHHHHcCC
Q 007169 594 -DALKAWAASEGI 605 (615)
Q Consensus 594 -~~l~~~~~~~~~ 605 (615)
..++.|++++-.
T Consensus 534 ~~~i~~~l~~~La 546 (1032)
T KOG1178|consen 534 IRDIRNYLKKELA 546 (1032)
T ss_pred HHHHHHhhccccc
Confidence 457778776543
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=198.01 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=203.8
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc---CcccCCCcEEEEcCChH-HHHHHHHHHHHHHhCcEEEEec
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLA-HIYERANQVMTVYSGVAVGFYQ 329 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~-h~~~~~~~~~~l~~G~~i~~~~ 329 (615)
..++...|--||||||+|+-+.+|+..+...+..+.. ..+...+|++....-.. +..++...+.+--.|++++-..
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~ 167 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS 167 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence 3456677888999999999999999987665554433 35677788765443311 1122333445555676665444
Q ss_pred -CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhh
Q 007169 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408 (615)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 408 (615)
++...-++.++.++||++.++|+.+..|++.+... |..+ +.
T Consensus 168 ~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~-------------------------G~~~----~~--------- 209 (438)
T COG1541 168 GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEE-------------------------GIDP----DK--------- 209 (438)
T ss_pred CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHc-------------------------CCCh----hh---------
Confidence 68999999999999999999999999998864432 1111 00
Q ss_pred cCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccc-cccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCC
Q 007169 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487 (615)
Q Consensus 409 ~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~-~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~ 487 (615)
.++|.+++|+|+++++..+.+.+.||+.+++.||+||..+.. ...... .. .-..-...-+.|+||++++++++
T Consensus 210 --~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~--~g--lhi~eD~~~~Ei~dP~t~e~l~d 283 (438)
T COG1541 210 --LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER--NG--LHIWEDHFIFEIVDPETGEQLPD 283 (438)
T ss_pred --cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc--cC--CCcchhhceeeeecCCcCccCCC
Confidence 489999999999999999999999999999999999997653 111111 10 11123567789999999999999
Q ss_pred CCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC----C-----cEEEEccCCCeEEcCCeeeech
Q 007169 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----G-----RLKIIDRKKNIFKLAQGEYIAA 558 (615)
Q Consensus 488 ~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G-----~l~i~GR~~d~ikl~~G~~v~p 558 (615)
|+ .|||.+..-. ++.+ .===|+|||+..+.++ | -..|.||.+|++++ .|.+|+|
T Consensus 284 ge---~GelV~T~L~------------~~~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~-~G~~vfp 346 (438)
T COG1541 284 GE---RGELVITTLT------------KEGM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIV-RGVNVFP 346 (438)
T ss_pred CC---eeEEEEEecc------------ccCc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEE-CCEEeCH
Confidence 98 9999987532 1111 1113999999999864 3 25689999999998 7999999
Q ss_pred HHHHHHHhcCCCcc---eEEEEeeCCCCeEEEEEEeC
Q 007169 559 EKIENVYAKCKFVG---QCFVYGDSFNSALVAIVSVD 592 (615)
Q Consensus 559 ~~IE~~l~~~p~V~---~~~V~g~~~~~~~va~vv~~ 592 (615)
..||.++.+.+.+. ++++........+..-|+..
T Consensus 347 ~~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~ 383 (438)
T COG1541 347 SQIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELE 383 (438)
T ss_pred HHHHHHHhcccCCCceEEEEEecCCCCceEEEEEEec
Confidence 99999999999999 77777733346677777665
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=178.94 Aligned_cols=441 Identities=15% Similarity=0.102 Sum_probs=294.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEcCCC--HhHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS-GLIYHGISKGSCIGLYFVNR--PEWLI 153 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~Gv~~gd~V~i~~~n~--~e~~~ 153 (615)
.+..+..+++++-..++...|.++. |.++. ...+||..+..++.++|+ .|.+.|+.++|+|.++...+ .|+++
T Consensus 92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i 167 (1363)
T KOG3628|consen 92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI 167 (1363)
T ss_pred hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence 4567778888888888999999987 77755 788999999999999999 67777999999999999886 89999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCce-
Q 007169 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ- 232 (615)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~- 232 (615)
..++|...|.+.+|+.+..+-+++..+++....++++...................+.+-.... ...+
T Consensus 168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t-----------~~~k~ 236 (1363)
T KOG3628|consen 168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKT-----------NDFKG 236 (1363)
T ss_pred hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhc-----------ccccc
Confidence 9999999999999999999999999999999999999887655544332211000000000000 0000
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc--------------------Cc
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------------------GT 292 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~--------------------~~ 292 (615)
.+..+. ...+...-. ..+|-||++++|+--|++++|+ ++.+.+.+.. .+
T Consensus 237 ~~~~~k---------~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~ 305 (1363)
T KOG3628|consen 237 NYTKDK---------IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVF 305 (1363)
T ss_pred eeehhh---------ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcc
Confidence 111111 011111222 8899999999999999999998 5443332211 13
Q ss_pred ccCCCcEEEEcCChHHHHHHHH-HHHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhc
Q 007169 293 KFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (615)
Q Consensus 293 ~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 367 (615)
+....++++..+......|+++ .+.++++|.+....+ ..+..+...+.++|.+++..--..+.......+.
T Consensus 306 ~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~---- 381 (1363)
T KOG3628|consen 306 PVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE---- 381 (1363)
T ss_pred ccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC----
Confidence 3455677888887777777776 567899998877766 4677788888899999887764444333221110
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh----CCc-----
Q 007169 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF----GGR----- 438 (615)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~----g~~----- 438 (615)
++.. .+.|.+-+....+++|.+++.-..+..+..+.....+ |..
T Consensus 382 ------------------------~p~a---~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~ 434 (1363)
T KOG3628|consen 382 ------------------------DPKA---TLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVV 434 (1363)
T ss_pred ------------------------Cccc---ccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCccee
Confidence 0000 1123333434457999999999999888776544432 221
Q ss_pred -------------cccccccccccccccccCCCC------------------------------CCCCCcCCCCCC-eeE
Q 007169 439 -------------VTEGYGMTETSCLISQLDEGD------------------------------NLSGHVGSPNAA-CEI 474 (615)
Q Consensus 439 -------------v~~~YG~TE~~~~~~~~~~~~------------------------------~~~~~vG~p~~~-~ev 474 (615)
....=+++|.+...-..+... .....+|...|+ +.+
T Consensus 435 ~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~ 514 (1363)
T KOG3628|consen 435 DFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATL 514 (1363)
T ss_pred echhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEE
Confidence 111122345443322222100 012335655554 566
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC------------CCCeeecccEEEEecCCcEEEEc
Q 007169 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------EDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~------------~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
.+++++....|.+++ +|||||.+++..++||.-+..|...|. ...|.|||=+|++. +|.++++|
T Consensus 515 ~vv~~~t~~LC~~~e---VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~ 590 (1363)
T KOG3628|consen 515 AVVNPDTNQLCKTDE---VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLG 590 (1363)
T ss_pred EEeCCCcccccccCc---ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEE
Confidence 777766666777776 999999999999999988877777661 12389999999998 55577776
Q ss_pred cCCCeEEcCCeeeech----------HHHHHHHhcCCCcceEEEEe
Q 007169 543 RKKNIFKLAQGEYIAA----------EKIENVYAKCKFVGQCFVYG 578 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p----------~~IE~~l~~~p~V~~~~V~g 578 (615)
-+.|++.--.|.+++. +-|+-+++..+.|-++.++-
T Consensus 591 ~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~ 636 (1363)
T KOG3628|consen 591 LKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE 636 (1363)
T ss_pred echhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee
Confidence 6666654334655543 33566677788888888886
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-14 Score=148.50 Aligned_cols=271 Identities=18% Similarity=0.241 Sum_probs=167.2
Q ss_pred eEEEEeccCCCCCCcEEEecHHHHHHHHHhh-cc--CcccCCCcEEEEcCCh-HHHHHHHHHHHHHHh-CcEEEEec--C
Q 007169 258 VATICYTSGTTGTPKGAVLSHGNLIASVAGA-TL--GTKFYPSDVYISYLPL-AHIYERANQVMTVYS-GVAVGFYQ--G 330 (615)
Q Consensus 258 ~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~-~~--~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~-G~~i~~~~--~ 330 (615)
-..+..||||||.|-.+..+........... .. ..++..++++...+.- .+.+.. +.. ...+-+++ .
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~------~~~~~~~~~~~~l~~ 174 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQS------VNNRWISLDFFDLLA 174 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHH------HHhccceeeecCCCc
Confidence 3457779999999999999988654332221 11 1344555554443211 122211 111 11123333 5
Q ss_pred ChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcC
Q 007169 331 DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410 (615)
Q Consensus 331 ~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g 410 (615)
+....++.|++++||++.+.|+.+..|++.+..... .
T Consensus 175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l-------------------------------------------~ 211 (430)
T TIGR02304 175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL-------------------------------------------T 211 (430)
T ss_pred CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-------------------------------------------C
Confidence 788899999999999999999999999875322100 0
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCC
Q 007169 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (615)
Q Consensus 411 ~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~ 490 (615)
.+++.++++||+++++..+.+++.||++|++.||+|| +.+++....+. -++-...--+|..++|++ +
T Consensus 212 ~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~~g~---lHl~ed~~~vE~~ivD~~-------~-- 278 (430)
T TIGR02304 212 IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCRCGT---LHLNEDLVHIEKQYLDEH-------K-- 278 (430)
T ss_pred CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecCCCC---EEEccccEEEEeeEECCC-------C--
Confidence 2689999999999999999999999999999999999 44333222111 111111112444467721 1
Q ss_pred CCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC----Cc----E-EEEccCCCeEEc--CCeee--ec
Q 007169 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GR----L-KIIDRKKNIFKL--AQGEY--IA 557 (615)
Q Consensus 491 ~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~----l-~i~GR~~d~ikl--~~G~~--v~ 557 (615)
.++.+| .++.|. +...+ =|+|||++.+.++ |. | .|.||.+|++++ .+|.. |+
T Consensus 279 --~~~~Vi------T~L~n~---~~PlI----RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~ 343 (430)
T TIGR02304 279 --RFVPII------TDFTRT---TQPIV----RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVF 343 (430)
T ss_pred --ceEEEE------ecCCCc---cceEE----eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeC
Confidence 133333 333221 00001 2899999998644 32 3 488999999985 35555 59
Q ss_pred hHHHHHHH-hcCCCcceEEEEeeCCCCeEEEEEEeCH--------HHHHHHHHHcCCC
Q 007169 558 AEKIENVY-AKCKFVGQCFVYGDSFNSALVAIVSVDQ--------DALKAWAASEGIQ 606 (615)
Q Consensus 558 p~~IE~~l-~~~p~V~~~~V~g~~~~~~~va~vv~~~--------~~l~~~~~~~~~~ 606 (615)
|..++.++ ...++|.+.-++... .+.+...+++.+ +.+.++++.+|+.
T Consensus 344 p~~~~~~i~~~~~~i~~yQi~Q~~-~~~l~v~~~~~~~~~~~~~~~~~~~l~~~~~~~ 400 (430)
T TIGR02304 344 PDFIRRVILFTLPLIVEYRVLQTG-SAQLELIADCELEMLEHCRSKALNALFTRQDIA 400 (430)
T ss_pred HHHHHHHHHhcCCCCceEEEEEcc-CCeEEEEEEeChHHHHHHHHHHHHHHHHHcCCC
Confidence 99999884 567899888777554 444544555433 3444566667665
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=141.11 Aligned_cols=77 Identities=23% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCeeecccEEEE-ecCCcEEEEccCCCeEEcCCe---eeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-
Q 007169 520 EDGWFHTGDIGMW-IPGGRLKIIDRKKNIFKLAQG---EYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV- 591 (615)
Q Consensus 520 ~~gw~~TGDlg~~-~~dG~l~i~GR~~d~ikl~~G---~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~- 591 (615)
.||||+|||+|++ |+||+|+|.||.| +| +||+|+ ||+++.+||+|.||+|+|.+++ +.++|+|++
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~ 279 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE 279 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence 6899999999998 6999999999998 67 899999 9999999999999999998765 579999986
Q ss_pred ---CHHHHHHHHHHc
Q 007169 592 ---DQDALKAWAASE 603 (615)
Q Consensus 592 ---~~~~l~~~~~~~ 603 (615)
+.+++.+||+++
T Consensus 280 ~~~~~~el~~~l~~~ 294 (365)
T PRK09188 280 LPADEKSLRARLAGA 294 (365)
T ss_pred CCCCHHHHHHHHHhh
Confidence 457899999876
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-08 Score=99.38 Aligned_cols=231 Identities=15% Similarity=0.153 Sum_probs=137.4
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC----cccCC-CcEEEEcCChHHH---H-HHH-HHHHHHHhCc
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG----TKFYP-SDVYISYLPLAHI---Y-ERA-NQVMTVYSGV 323 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~----~~~~~-~d~~l~~lPl~h~---~-~~~-~~~~~l~~G~ 323 (615)
.++++..++-||||||.|--+.+.+..+.....+.... ..... .-.++...|-... + ... ..+..+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 34567778889999999866666666655554333222 12221 1233333343211 1 111 1222334455
Q ss_pred EEEEec--CChHHHHHHH----HhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007169 324 AVGFYQ--GDNMKLMDDM----AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (615)
Q Consensus 324 ~i~~~~--~~~~~l~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (615)
...+-. .|...+++.+ ...+|..+++.|.++-.++..+...... .
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~-------------------------~---- 217 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR-------------------------F---- 217 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc-------------------------c----
Confidence 533312 3666666655 3567899999999777766533221100 0
Q ss_pred hHHhHHHHHhhcCCcEEEEEEcC------CCCc-HHHHHHHHHHhCC----ccccccccccccccccccCCCCCCCCCcC
Q 007169 398 DRLVFNKIKDKLGGRVRFMGSGA------SPLS-PDVLDFLKICFGG----RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (615)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg------~~l~-~~~~~~~~~~~g~----~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (615)
.+....+.+-.|| +.++ .++.+.+++.||+ .+++.|||||.....+......
T Consensus 218 ----------~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~------- 280 (365)
T PF04443_consen 218 ----------RLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH------- 280 (365)
T ss_pred ----------cCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc-------
Confidence 0112456666665 4565 5667788888998 6999999999765444332111
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC--------CcE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG--------GRL 538 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d--------G~l 538 (615)
.+.|-. |.|+|+.+..+++.|+ .|-|-+-.+... . .-+..-|.|+|.+..+ .++
T Consensus 281 ~~~p~w-V~iRDp~tl~~~~~Ge---~Gli~vidl~~~-s-------------~p~~IlTeDlGvl~~~~~c~cr~g~~f 342 (365)
T PF04443_consen 281 FHVPPW-VIIRDPETLEPLPPGE---TGLIQVIDLANT-S-------------YPGFILTEDLGVLHGDDDCGCRKGKYF 342 (365)
T ss_pred ccCCCe-EEEECCCCCcCCCCCC---eeEEEEEccccc-C-------------CCcEEEEcceeeecCCCCCCCccCCEE
Confidence 122222 7888998889999887 899988776432 1 2344779999988654 279
Q ss_pred EEEccCCCeE
Q 007169 539 KIIDRKKNIF 548 (615)
Q Consensus 539 ~i~GR~~d~i 548 (615)
.|+||.+.-=
T Consensus 343 ~vlGR~~~ae 352 (365)
T PF04443_consen 343 EVLGRADGAE 352 (365)
T ss_pred EEEeCCCCCc
Confidence 9999988654
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.2e-05 Score=82.32 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=85.2
Q ss_pred CcEEEEEEcCCCCcHHHHHHHHHHhCC--ccccccccccccccccccCCCCCCCCCcCCCCCCe-eEEEeecCCCC----
Q 007169 411 GRVRFMGSGASPLSPDVLDFLKICFGG--RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC-EIKLVDVPEMN---- 483 (615)
Q Consensus 411 ~~lr~i~~gg~~l~~~~~~~~~~~~g~--~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-ev~ivd~~~~~---- 483 (615)
.+|+++.+-+.--.....+.+++.+|- .+..+|+.||+...+-.. +. .. .+...++. =+..++.++.+
T Consensus 267 P~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~~--~~--~~~l~~~~~ffEFip~~~~~~~~~ 341 (528)
T PF03321_consen 267 PNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-PE--DP--GYVLAPDSGFFEFIPVDEDEQNPS 341 (528)
T ss_dssp TT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--CC--C----EEE-TTSSEEEEEE-STT-----
T ss_pred CCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-CC--CC--ceEeecCCeEEEEEeccCCccccc
Confidence 588966655444445666777777753 355799999974322221 11 11 11122221 23334433321
Q ss_pred ---------CCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec--CC--cEEEEccCCCeEEc
Q 007169 484 ---------YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP--GG--RLKIIDRKKNIFKL 550 (615)
Q Consensus 484 ---------~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~--dG--~l~i~GR~~d~ikl 550 (615)
.+..|+ .-||.|... .|.|. |+.||+.++.. ++ .+.|+||.+.++.+
T Consensus 342 ~~~~~l~~~ele~G~---~YelviTt~---~GLyR--------------Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l 401 (528)
T PF03321_consen 342 EQPKTLLLHELEVGE---EYELVITTN---SGLYR--------------YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL 401 (528)
T ss_dssp --SSSEEGGG--TT----EEEEEEEST---TS-SS--------------EEECEEEEEEEEETTEEEEEEEEETTEEE-S
T ss_pred CCCceecHHHhcCCC---eEEEEEecc---cceee--------------eecCCEEEEeeccCCCcEEEEeccCCceeec
Confidence 112222 556777643 23331 89999999852 45 79999999999998
Q ss_pred CCeeeechHHHHHHHhcC-----CCcceEEEEeeC---CCCeEEEEEEeC
Q 007169 551 AQGEYIAAEKIENVYAKC-----KFVGQCFVYGDS---FNSALVAIVSVD 592 (615)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~-----p~V~~~~V~g~~---~~~~~va~vv~~ 592 (615)
.||+++-.+|++++.+. -.+.+.++..+. ...+-+-++.+.
T Consensus 402 -~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~ 450 (528)
T PF03321_consen 402 -FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE 450 (528)
T ss_dssp -SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred -ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence 89999999999999664 335677777662 334555565553
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0016 Score=71.15 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=37.7
Q ss_pred eecccEEEEec----CCcEEEEccCCCeEEcCCeeeechHHHHHHHhc
Q 007169 524 FHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (615)
Q Consensus 524 ~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~ 567 (615)
|+.||+.++.. -=.|.|+||.+.++.+ .||++.-++++.++.+
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~-~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSI-ESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceec-ccccCCHHHHHHHHHH
Confidence 89999999863 2368999999999997 8999999999998866
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.5e-05 Score=58.54 Aligned_cols=44 Identities=25% Similarity=0.316 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCHHHHHHHHHHc
Q 007169 560 KIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQDALKAWAASE 603 (615)
Q Consensus 560 ~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~~~l~~~~~~~ 603 (615)
|||+++.+||+|.+|+|+|.+++ +.++|+|+++.+++++|++++
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~~~~~i~~~~~~~ 47 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVLDEEEIRDHLRDK 47 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEeeecccccchhhh
Confidence 79999999999999999998755 589999999778999999886
|
... |
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0097 Score=64.66 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=37.3
Q ss_pred eecccEEEEe----cCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcC
Q 007169 524 FHTGDIGMWI----PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKC 568 (615)
Q Consensus 524 ~~TGDlg~~~----~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~ 568 (615)
||.||+.++. .--.|.|++|.+.+..+ .|++.+-+++-+++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi-~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSI-DTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeec-ccccCCHHHHHHHHHHH
Confidence 8899998874 33479999999999998 89999999998888553
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.044 Score=59.61 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=36.6
Q ss_pred eecccEEEEe----cCCcEEEEccCCCeEEcCCeeeechHHHHHHHhc
Q 007169 524 FHTGDIGMWI----PGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAK 567 (615)
Q Consensus 524 ~~TGDlg~~~----~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~ 567 (615)
|+.||+.++. ..-.|.|++|.+-+..+ .|++.+-+++-.++.+
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi-~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSI-DSDKTDEVELQNAVKN 469 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeec-ccccCCHHHHHHHHHH
Confidence 8899998874 23469999999999998 8999999998887754
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.27 Score=51.21 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=75.3
Q ss_pred eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceE
Q 007169 111 YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188 (615)
Q Consensus 111 ~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 188 (615)
..-+|+.|+...+..+|+.|...|..+||+|.++..-+. .-+-..+|+.++|++++|+.+. .-+....++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence 345799999999999999999999999998887776221 1167888999999999999873 4567788999999999
Q ss_pred EEEcccchHHHHhhhc
Q 007169 189 VFCVPQTLNSLLSCLS 204 (615)
Q Consensus 189 vi~~~~~~~~l~~~~~ 204 (615)
|.+.+..+-.+.+...
T Consensus 186 I~~tps~~l~lae~~~ 201 (438)
T COG1541 186 IAATPSYLLYLAEEAE 201 (438)
T ss_pred EEEChHHHHHHHHHHH
Confidence 9999887766555443
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.94 E-value=5.1 Score=42.50 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=77.6
Q ss_pred cCccCce--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 007169 105 DGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (615)
Q Consensus 105 ~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i 180 (615)
.|..|.. ..+|..++......++..+...|+++||++........ ......+++...|+.++++.... .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 4554443 34577787777777778888889999998877665432 22234677889999999887654 5788899
Q ss_pred HHhccceEEEEcccchHHHHhhhcc------CCCceEEEEECC
Q 007169 181 VNHASVQAVFCVPQTLNSLLSCLSE------VPTVRLIVVIGG 217 (615)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l~~~~~~------~~~l~~ii~~~~ 217 (615)
|++.++.++++....+..+.+.... ...++.++.-++
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge 205 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAE 205 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCC
Confidence 9999999999998876665543211 134666665443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=87.40 E-value=6.1 Score=42.34 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=67.5
Q ss_pred cCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 007169 105 DGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (615)
Q Consensus 105 ~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i 180 (615)
.|..|. ...+|..++...+..++..+...|+.+||++.++.+.... .....+++...|+.++|... .+....+
T Consensus 95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~ 171 (445)
T TIGR03335 95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI 171 (445)
T ss_pred CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence 444443 3457899999888888888888999999999988876542 23456788999998887643 2345678
Q ss_pred HHhccceEEEEcccchHHH
Q 007169 181 VNHASVQAVFCVPQTLNSL 199 (615)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l 199 (615)
+++.++..+++....+-.+
T Consensus 172 i~~~~~t~l~~~ps~ll~L 190 (445)
T TIGR03335 172 IESYRPTGIVASVFKLLRL 190 (445)
T ss_pred HHHhCCCEEEECHHHHHHH
Confidence 8999999998876654433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=84.48 E-value=2.6 Score=34.23 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=28.2
Q ss_pred eeeechHHHHHHHhcCCCcceEE---EEeeCCCCeEEEEEEeCH
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCF---VYGDSFNSALVAIVSVDQ 593 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~---V~g~~~~~~~va~vv~~~ 593 (615)
|.||+|..||+++.++|++..-+ |.-....+.+...|..++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~ 44 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRP 44 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEEST
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECC
Confidence 78999999999999999998332 222333356666666644
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 615 | ||||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 9e-25 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 4e-23 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 9e-23 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-22 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-22 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-22 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 4e-21 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 5e-21 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 6e-21 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-20 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 3e-20 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 4e-20 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-20 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 5e-20 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-19 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 9e-19 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 4e-14 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 5e-14 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 2e-12 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 2e-12 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 7e-12 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 1e-11 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 3e-11 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-10 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 1e-10 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 4e-10 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 9e-10 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 8e-08 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 2e-07 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 2e-06 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 9e-06 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 3e-05 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 3e-05 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-05 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 1e-04 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 1e-04 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 9e-04 |
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 615 | |||
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 2e-79 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 3e-78 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 4e-78 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 3e-77 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 3e-76 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 7e-76 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 2e-73 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 3e-73 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 4e-73 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 7e-71 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 1e-70 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 3e-69 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 3e-68 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 3e-67 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 5e-67 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 2e-50 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 5e-41 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 4e-34 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 5e-34 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 2e-32 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 3e-31 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 2e-12 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 4e-09 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 3e-08 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 1e-07 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 3e-07 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 3e-07 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 6e-07 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 |
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 2e-79
Identities = 118/507 (23%), Positives = 187/507 (36%), Gaps = 91/507 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E V + L+ G+ G + E L++ A + +PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ Y + A + V C P + + + ++V + G
Sbjct: 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ ++ + DD+A I YTSGTTG KGA+LSH NL ++ +
Sbjct: 135 -SLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLM---DDMAAL----RPTV 346
F P DV I LP+ H + + V V + +M + D L R TV
Sbjct: 193 FTPDDVLIHALPIYHTHG-----LFV--ASNVTLFARGSMIFLPKFDPDKILDLMARATV 245
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP Y R+ SP +
Sbjct: 246 LMGVPTFYTRLLQ----------------------------------SPRLTKETT---- 267
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
G +R SG++PL D G V E YGMTET+ S +GD + G VG
Sbjct: 268 ----GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
++ D PE + PR G I V+GP +FKGY++ +TK +DG+
Sbjct: 324 PALPGVSARVTD-PET-----GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF 377
Query: 524 FHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DS 580
F TGD+G G + I+ R K++ + G + ++IE+ V + V G
Sbjct: 378 FITGDLGKIDERGYVHILGRGKDLV-ITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD 436
Query: 581 FNSALVAIV------SVDQDALKAWAA 601
F + A+V ++D+ +
Sbjct: 437 FGEGVTAVVVRDKGATIDEAQVLHGLD 463
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 3e-78
Identities = 104/494 (21%), Positives = 183/494 (37%), Gaps = 75/494 (15%)
Query: 70 SRFPDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P E G+ + ++ + LG + G +Y E +G
Sbjct: 13 GPKPFYPIEEGSAGTQLRKYMERYAK---LGAIAFTNAVTGVD--YSYAEYLEKSCCLGK 67
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
L +G+ I L N E+ I A P + + + + +
Sbjct: 68 ALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L+ +++ V T++ IV++ D ++ + + S+ +
Sbjct: 128 VFSSKKGLDKVITVQKTVTTIKTIVIL---DSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
+ + VA I +SG+TG PKG L+H N++ + G + P ++ +P
Sbjct: 185 TVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + ++ D + T VP L+
Sbjct: 245 FHHGF-----GMFT---TLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
+ + LS + +
Sbjct: 297 L--------------------NKSELLNKYDLS----------------------NLVEI 314
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F V +GYG+TET+ I EGD+ G G + K
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAK 374
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
++D+ ++ GE+CV+GP++ KGY + TKE+IDE+GW HTGDIG +
Sbjct: 375 VIDLDTKKSLGPNRR---GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431
Query: 536 GRLKIIDRKKNIFK 549
I+DR K++ K
Sbjct: 432 KHFFIVDRLKSLIK 445
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 4e-78
Identities = 102/496 (20%), Positives = 172/496 (34%), Gaps = 78/496 (15%)
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRV-RVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P T + + Y + + D + +TY E +
Sbjct: 10 GPAPFYPLEDGTAGEQLH--KAMKRYALVPGTIAFTDAHIEVN--ITYAEYFEMSVRLAE 65
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
+ +G++ I + N ++ + P D + +N +
Sbjct: 66 AMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L +L+ ++P ++ I+++ D + +T +
Sbjct: 126 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD---YQGFQSMYTFVTSHLPPGFNEYDFV 182
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
P S + +A I +SG+TG PKG L H + G + P +S +P
Sbjct: 183 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + LM + + VP L++
Sbjct: 243 FHHGF-----GMFT---TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
A + LS + +
Sbjct: 295 F--------------------AKSTLIDKYDLS----------------------NLHEI 312
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F + +GYG+TET+ I EGD+ G VG E K
Sbjct: 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAK 372
Query: 476 LVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
+VD + T + RGE+CVRGP+I GY + T +ID+DGW H+GDI W
Sbjct: 373 VVD-LD---TGKTLG-VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 534 PGGRLKIIDRKKNIFK 549
I+DR K++ K
Sbjct: 428 EDEHFFIVDRLKSLIK 443
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 3e-77
Identities = 98/505 (19%), Positives = 173/505 (34%), Gaps = 89/505 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + L GI+KG + L N E+ + + + ++VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
V +I++ + + V + + + ++ + G D
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS------------- 150
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ L + +P DD I YTSGTTG PKG V +H ++ ++ +
Sbjct: 151 --LAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCS 349
D + LP+ H+ + + GV + F D K+ + R + +
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQF---DATKVWSLIVEERVCIGGA 264
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP + M P + L
Sbjct: 265 VPAIL------------------------------NFMRQ----VPEFAELDA------- 283
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
R+ +G +P+ ++ V +GY +TE+ + L D L G G
Sbjct: 284 -PDFRYFITGGAPMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGR 341
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR--GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
++ + + GE+ ++ ++ K Y+ T++ D +GWF
Sbjct: 342 ATMFTDVAVRG-------DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFR 393
Query: 526 TGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG---DSF 581
TGDIG G L I DR K++ GE + AE IE+V V + V G + +
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMIISG-GENVYPAE-IESVIIGVPGVSEVAVIGLPDEKW 451
Query: 582 NSALVAIV-----SVDQDALKAWAA 601
AIV V + + +
Sbjct: 452 GEIAAAIVVADQNEVSEQQIVEYCG 476
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 3e-76
Identities = 122/510 (23%), Positives = 183/510 (35%), Gaps = 103/510 (20%)
Query: 57 NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
++RS + + P+ H + + L ++G G+ TY
Sbjct: 7 FIFRSKLPDIYI-------PKNLPLHSYVLENLSNHSSKPCL-----INGANGDV--YTY 52
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
+ V SGL GI +G I L+ + PE+++ S I P
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236
+ + + + + E V+++ V D L +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDG------------CLHF 159
Query: 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGT 292
S L + PDDV + Y+SGTTG PKG +L+H LI SVA G
Sbjct: 160 SELTQADENEAPQV-DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------R 343
F+ DV + LP+ HIY + + G G + +M ++ +L +
Sbjct: 219 YFHSEDVILCVLPMFHIY-----ALNS--IMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
++ VP + I A + LS
Sbjct: 272 VSIAPVVPPVMMSI--------------------AKSPDLDKHDLS-------------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-----CLISQLDE 457
+R + SG +PL ++ D R+ +GYGMTE CL +
Sbjct: 298 --------SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349
Query: 458 GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTK 515
D G G+ E+K+VD PE T P GEIC+RG I KGY D T
Sbjct: 350 FDIKPGACGTVVRNAEMKIVD-PE---TGASLP-RNQPGEICIRGDQIMKGYLNDPEATS 404
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545
ID++GW HTGDIG L I+DR K
Sbjct: 405 RTIDKEGWLHTGDIGYIDDDDELFIVDRLK 434
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 250 bits (642), Expect = 7e-76
Identities = 97/505 (19%), Positives = 180/505 (35%), Gaps = 103/505 (20%)
Query: 70 SRFPD--HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWM----TYGEAGTAR 123
FP +P+I + D A + F + + + + E
Sbjct: 9 IGFPSLYYPKI-SLADRIDAAAEKFGEKTAI-----ISAEPKFPSEFPESMNFLEICEVT 62
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
++ SG+ G+ KG +G+ N ++++ +A + VP+ +++I+N
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILND 122
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
+ + + L + V + V+GG ++ + S ++ G
Sbjct: 123 SEATTLVVHSMLYENFKPVLEKTG-VERVFVVGG--------------EVNSLSEVMDSG 167
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
+ + +DVA I YT GTTG PKG +L+H NL A+ + T D +
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGC 227
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLY 354
+P+ H E + V + G+ +M + L + T +VP
Sbjct: 228 MPMFHSAE-----FGL---VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPAL 279
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
N ++ ++ + +
Sbjct: 280 N------------------------------VLV--NTLESSNKTYDWSYL--------K 299
Query: 415 FMGSGASPLSPDVLDFLKICFGGR-------VTEGYGMTETSCLIS-QLDEGDNLSGHVG 466
+GA P++P +++ L + + +GMTE +++ + S G
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQG 359
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVI----DE 520
P + E+K++ E + GEI +RGP IFKGY+K E + +E
Sbjct: 360 VPMSDIELKVIS-LE---DGRELG-VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414
Query: 521 DGWFHTGDIGMWIPGGRLKIIDRKK 545
+F TGD+G G L DR K
Sbjct: 415 RKFFRTGDVGFIDEEGFLHFQDRVK 439
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 2e-73
Identities = 109/501 (21%), Positives = 174/501 (34%), Gaps = 91/501 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E A +G I + ++ E + A +VPL G
Sbjct: 49 LTYAELAAA-----AGATAGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I++ ++ V P +E+P + +D +
Sbjct: 104 DKELAHILSDSAPSLVLAPPD---------AELPPALGALERVDVDVRARGAV------- 147
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
P D A + YTSGTTG PKGAV+ L ++ +
Sbjct: 148 ---------------PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 294 FYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351
+ DV + LPL H++ ++ + G +V ++ T+ VP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVP 251
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
+Y+RI + L + L
Sbjct: 252 TMYHRIAE----TLPADPELAKAL-----------------------------------A 272
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R + SG++ L + + G RV E YGMTET S +G+ +G VG P
Sbjct: 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E++LV+ + + GEI VRGP +F Y T EDG+F TGD+ +
Sbjct: 333 VELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAV 391
Query: 532 WIPGGRLKIIDRK-KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVA 587
P G ++I+ RK ++ K G I A +IEN + V + V G +VA
Sbjct: 392 RDPDGYVRIVGRKATDLIKSG-GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVA 450
Query: 588 IV-------SVDQDALKAWAA 601
+ L A
Sbjct: 451 WIVPADPAAPPALGTLADHVA 471
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 3e-73
Identities = 102/507 (20%), Positives = 181/507 (35%), Gaps = 95/507 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ + + SGL+ G+ G + + N E + + A + I +P+ L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D + +++ + V + + L + V+ IG
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAP--------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ +L S PFS P+ D I +T+ G P+GA++S GNL+ + +
Sbjct: 143 --FKDLASDT-----PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVF 347
+ +DV + LPL H+ + +G A F D + D+ A + TV
Sbjct: 196 WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF---DPAQAARDIEAHKVTVM 252
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
+ +L +L
Sbjct: 253 AEFAPML------------------------------GNIL----DQAAPAQL------- 271
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+R + +P + + + C +G +ETS L + D G
Sbjct: 272 ---ASLRAVTGLDTPETIERFE--ATCPNATFWATFGQSETSGLSTFAPYRDRP-KSAGR 325
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
P + +VD +ED+P P GEI +RGP +FKGY+ + T+ +GW
Sbjct: 326 PLFWRTVAVVD-------AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWH 377
Query: 525 HTGDIGMWIPGGRLKIIDR--KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---D 579
HTGD+G + G L R +K + K GE + ++E + + V G
Sbjct: 378 HTGDMGRFDADGYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVPDP 436
Query: 580 SFNSALVAIV------SVDQDALKAWA 600
++ A+ A+ S+ DAL +
Sbjct: 437 QWSEAIKAVCVCKPGESIAADALAEFV 463
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 4e-73
Identities = 91/501 (18%), Positives = 172/501 (34%), Gaps = 82/501 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY + + L + S +GLY N + +I+ HAC + + L
Sbjct: 27 YTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLT 83
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
P+ + + VQ +FC + L ++ + G+ D + T
Sbjct: 84 PNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT-- 141
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ ++ + + + DD+A+I +TSGTTG K + N AS G
Sbjct: 142 ---SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES 198
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSV 350
F ++S LP+ HI + + V G V + +++ + R T V
Sbjct: 199 LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLV 258
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P+ ++ + +
Sbjct: 259 PQTL------------------------------NWLMQ----QGLHEPY---------- 274
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
++ + G + LS +++ L+ + + +GMTET + VG
Sbjct: 275 -NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGM 331
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P+A ++K+ + GE+ ++G + GY E+G+F+TG
Sbjct: 332 PSANVDVKIKN---------PNKEGHGELMIKGANVMNGYLYPT-DLTGTF-ENGYFNTG 380
Query: 528 DIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG---DSFNS 583
DI G + I DR+K++ + GE I + IE V + + G D++
Sbjct: 381 DIAEIDHEGYVMIYDRRKDLII-SGGENIYPYQ-IETVAKQFPGISDAVCVGHPDDTWGQ 438
Query: 584 ALVAIV----SVDQDALKAWA 600
+ + L A+
Sbjct: 439 VPKLYFVSESDISKAQLIAYL 459
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 7e-71
Identities = 91/516 (17%), Positives = 163/516 (31%), Gaps = 99/516 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ E V + L G+ + + N + +I A + L L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ ++ + A + + + + I+ +G D P + G I
Sbjct: 90 SAELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLG--DLVRDGEPYSYGPPI 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
+P A I YTSGTTG PK A++ +G
Sbjct: 146 ---------------EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG 190
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALR 343
+ +V + +PL H+ + + +A+ F + + + +
Sbjct: 191 LRHGRHNVVLGLMPLYHVVG---FFAVLVAALALDGTYVVVEEF---RPVDALQLVQQEQ 244
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + P + L AA +A L
Sbjct: 245 VTSLFATPTHLDA------------------LAAAAAHAGSSLKLD-------------- 272
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
+R + + + VL+ + G YG TE + G
Sbjct: 273 --------SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---G 321
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGP-LIFKGYYKDEIQTKEVID 519
+P E+++V D+ GE+ V F GY T E +
Sbjct: 322 TEMAPGFFSEVRIVR-IG---GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIA-AEKIENVYAKCKFVGQCFVYG 578
DGW+ T D+ +W P G ++I+ R ++ + GE I +E IE V V + V G
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGRVDDMII-SGGENIHPSE-IERVLGTAPGVTEVVVIG 434
Query: 579 ---DSFNSALVAIV------SVDQDALKAWAASEGI 605
+ ++ A V ++ DAL + S +
Sbjct: 435 LADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 1e-70
Identities = 89/458 (19%), Positives = 147/458 (32%), Gaps = 66/458 (14%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TYGE S L G+ I L ++ + + V L
Sbjct: 49 TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P Y++ H+ +AV + ++ L +++ + P L
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRL-------A 161
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGT 292
+ L+ + + DD+A Y+SG+TG PKG V +H NL + A
Sbjct: 162 PLFEELIDAAAPAAKA-AATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 293 KFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCS 349
+DV S L Y N + + G + + RPTVF
Sbjct: 221 GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG 280
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP LY ML N D
Sbjct: 281 VPTLYA------------------------------NMLVSPNLPARADV---------- 300
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469
+R S L ++ + FG + +G G TE + G G G P
Sbjct: 301 --AIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPV 358
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
EI+L D P G++ ++GP Y+ + +++ W +
Sbjct: 359 PGYEIELRD-------EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRS 410
Query: 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
GD +P G R ++ K++ G+Y++ ++E V
Sbjct: 411 GDKYCRLPNGCYVYAGRSDDMLKVS-GQYVSPVEVEMV 447
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 3e-69
Identities = 120/553 (21%), Positives = 211/553 (38%), Gaps = 98/553 (17%)
Query: 25 SSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV--SRFPD--HPEIGT 80
SS H+ ++G + + P++ + +S+ + ++ S+ PD P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNHLS 62
Query: 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC 140
HD + + F L ++G G TY + ++ + G+++
Sbjct: 63 LHDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDV 115
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+ L N PE+++ A S + P + ++ + + + ++ +
Sbjct: 116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIK 175
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDV 258
++ V ++ + IP L ++ L + + PDDV
Sbjct: 176 PLQNDDG-VVIVCIDDNESVPIPE-------GCLRFTELTQSTTEASEVIDSVEISPDDV 227
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ Y+SGTTG PKG +L+H L+ SVA G F+ DV + LP+ HIY
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY---- 283
Query: 315 QVMTVYSGVAVGFYQGDNMKLM-----DDMAAL----RPTVFCSVPRLYNRIYAGITSAV 365
+ + G G + +M + + L + TV VP
Sbjct: 284 -ALNSI--MLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-------------- 326
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-GRVRFMGSGASPLS 424
P+ + + +K +R + SGA+PL
Sbjct: 327 -----------------------------PIVLAIAKSSETEKYDLSSIRVVKSGAAPLG 357
Query: 425 PDVLD-FLKICFGGRVTEGYGMTETSCLIS-----QLDEGDNLSGHVGSPNAACEIKLVD 478
++ D ++ +GYGMTE +++ + SG G+ E+K+VD
Sbjct: 358 KELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD 417
Query: 479 VPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
P+ T + GEIC+RG I KGY + T E ID+DGW HTGDIG+
Sbjct: 418 -PD---TGDSLS-RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472
Query: 537 RLKIIDRKKNIFK 549
L I+DR K + K
Sbjct: 473 ELFIVDRLKELIK 485
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 3e-68
Identities = 90/470 (19%), Positives = 158/470 (33%), Gaps = 87/470 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E A + L GI G + N E I A V +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + Q L + ++E ++R++ ++ +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-------- 162
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ ++ + +P D+VA + GTTGTPK +H + SV +
Sbjct: 163 -----HNLQDAINHPAEDFTA-TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+F Y+ +P AH Y M+ G F G + L D +
Sbjct: 217 VEICQFTQQTRYLCAIPAAHNY-----AMSS-PGSLGVFLAGGTVVLAADPSATLCFPLI 270
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ V VP + A + +A L+
Sbjct: 271 EKHQVNVTALVPPAVSL------------------WLQALIEGESRAQLA---------- 302
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
++ + G + LS + + G ++ + +GM E ++LD+
Sbjct: 303 ------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350
Query: 460 NL-SGHVGSPNA-ACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
G P E+ + D E P P+ G + RGP F+GYYK
Sbjct: 351 EKIIHTQGYPMCPDDEVWVADA-------EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
D +G++ +GD+ P G + + R+K+ GE IAAE+IEN+
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG-GEKIAAEEIENL 452
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 3e-67
Identities = 92/470 (19%), Positives = 156/470 (33%), Gaps = 91/470 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+Y E T + +G GI + + + N E+ V A + V +
Sbjct: 51 WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ Y A A S++PT++ I+V G ++ +P
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
L + K DVA + + G+TG K +H + I S+ +
Sbjct: 166 -----------LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
S VY++ LP+AH Y ++ GV Y G + L +
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNY-----PLSSP-GVLGVLYAGGRVVLSPSPSPDDAFPLI 268
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ T+ VP L + + R
Sbjct: 269 EREKVTITALVPPLA------------------------------MVWMD----AASSRR 294
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + S + +K FG + + +GM E ++L D
Sbjct: 295 DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE 346
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P + E ++ D D+ G + RGP +GYYK E
Sbjct: 347 EIIVNTQGKPMSPYDESRVWD-------DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
EDG++ TGDI G + + R K+ GE +AAE++EN
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI-NRGGEKVAAEEVENH 448
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 5e-67
Identities = 78/470 (16%), Positives = 154/470 (32%), Gaps = 87/470 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E T + + L G+ KG + N E+ IV A + + +
Sbjct: 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + + Q + S + +I+++ L
Sbjct: 116 QYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL--- 172
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ + FS D+VA + G+TGTPK +H + SV +
Sbjct: 173 ---------DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRAS 223
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+ + LP H + +++ G + G + + + +
Sbjct: 224 AEICGLNSNTRLLCALPAPHNF-----MLSSP-GALGVLHAGGCVVMAPNPEPLNCFSII 277
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ + VP L +
Sbjct: 278 QRHQVNMASLVPSAV------------------------------IMWLE----KAAQYK 303
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + + + ++ + +GM E ++L D
Sbjct: 304 DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSD 355
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P ++ EIK+VD + + P G + RGP F GYY+
Sbjct: 356 EQIFTTQGRPISSDDEIKIVD-------EQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
+V DED ++++GD+ P G L+++ R K+ GE IA+E+IE +
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI-NRGGEKIASEEIEKL 457
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 2e-50
Identities = 115/510 (22%), Positives = 177/510 (34%), Gaps = 114/510 (22%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA F V GE TY E R + GL G+ G +
Sbjct: 26 RAAALFGR-----KEVVSRLHTGEVHRTTYAEVY-QRARRLMGGLRALGVGVGDRVATLG 79
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N L A + L P + YI+NHA + + P L + + E
Sbjct: 80 FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE 139
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD----DVATI 261
+ TV+ VV+ + L Y L + +
Sbjct: 140 LKTVQHFVVMD--EKAPEGY--------LAYEEALGEE--------ADPVRVPERAACGM 181
Query: 262 CYTSGTTGTPKGAVLSH-GN-LIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
YT+GTTG PKG V SH L + A GT DV + +P+ H N
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH----VNAWCLP 237
Query: 320 YSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
Y+ VG + L++ T VP ++ + + ++G
Sbjct: 238 YAATLVGAKQVLPGPRLDPAS--LVELFDGEGVTFTAGVPT----VWLALADYLESTGH- 290
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-F 430
+L R + G S ++ F
Sbjct: 291 ------------------------------------RLKTLRRLV-VGGSAAPRSLIARF 313
Query: 431 LKICFGGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDV 479
+ G V +GYG+TETS ++ Q +E L G P +++ D
Sbjct: 314 ER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD- 370
Query: 480 PEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534
E P P+ GE+ ++GP I GYY +E T+ + DG+F TGDI +W
Sbjct: 371 EEGR------PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424
Query: 535 GGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
G ++I DR K++ K + GE+I++ +EN
Sbjct: 425 EGYVEIKDRLKDLIK-SGGEWISSVDLENA 453
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 5e-41
Identities = 71/437 (16%), Positives = 139/437 (31%), Gaps = 75/437 (17%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ + E + + L G+ +G + + PEW +V C I +P
Sbjct: 69 GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
+ + Y + + +A+ + + + + SE P++R+ +++
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD------ 182
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
L + LL S + + I +TSGT+G PK A S+ +L
Sbjct: 183 ----GWLNFKKLL-NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM 237
Query: 288 ATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQGDNM---KLMDDMAALR 343
T SD+ + I +M G + ++ +++
Sbjct: 238 DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYP 297
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
P +Y R+ Q LS
Sbjct: 298 IKSMMGAPIVY-------------------RML-------LQQDLSSYKFP--------- 322
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
++ + L P+ L+ + G + E YG TET G
Sbjct: 323 --------HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG-----PLIFKGYYKDEIQTK 515
++G+ + +++++D + P G+I +R IF GY + +T
Sbjct: 375 YMGTAASCYDVQIID-------DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427
Query: 516 EVIDEDGWFHTGDIGMW 532
I ++ GD G+
Sbjct: 428 ANI-RGDFWLLGDRGIK 443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 5e-34
Identities = 81/456 (17%), Positives = 153/456 (33%), Gaps = 109/456 (23%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G K T+ + + + + HGI KG + L +R ++ I+VP
Sbjct: 82 GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
L + Y + A ++ + C VP+ ++ + ++P + V ++ I
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID 201
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPP---KPDDVATICYTSGTTGTPKGAVLSHGN 280
+ L + + + K +D+ + ++SGT G PK +
Sbjct: 202 ------------FRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTY 249
Query: 281 LIASVAGATLGTKFYPSDVY-----------ISYL---PLAHIYERANQVMTVYSGVAVG 326
+ + A ++ + G AV
Sbjct: 250 PLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA-------------GCAVF 296
Query: 327 FYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
Y + +++ + T FC+ P +Y R
Sbjct: 297 VYDYDRFEAKNMLEKASKYGVTTFCAPPTIY-------------------RFL------- 330
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGY 443
+ LS N S + ++ PL+P+V + G ++ EG+
Sbjct: 331 IKEDLSHYNFSTL-----------------KYAVVAGEPLNPEVFNRFLEFTGIKLMEGF 373
Query: 444 GMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
G TET I+ + G +G P +I+L+D + + C GEI +
Sbjct: 374 GQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-------RDGRLCEVGEEGEIVINT 426
Query: 501 ----PL-IFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
P+ +F Y KD +T+E DG++HTGD+
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAW 461
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-32
Identities = 94/492 (19%), Positives = 160/492 (32%), Gaps = 120/492 (24%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + + + L G G + L F + C I+VP+Y
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 174 PDA---VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230
+ IV ++ V + + + D++ + P
Sbjct: 101 EKLLDKAQRIVTNSKPVIVLMIADHIKKFTA------------------DELNTNPKFLK 142
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
+ + ++ S+ QP + K +D+A + YTSG+T PKG ++SH NL+ ++
Sbjct: 143 IPAIALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ S+LP H M + + Y G +M P F
Sbjct: 202 SFHMNDETIIFSWLPPHH-------DMGLIGCILTPIYGGIQAIMM------SPFSFLQN 248
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P + + SG N AY +I+++
Sbjct: 249 PLSWLKHIT--KYKATISGS-----PNFAY------------------DYCVKRIREEKK 283
Query: 411 -----GRVRFMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG- 458
+GA P+ + ++ F + FG R YG+ E + L++ G
Sbjct: 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 459 ---------DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
+ H V S N E+K++D P+ PC
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIID-PDTL-----IPCDFD 397
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPG-----GRL 538
GEI V+ + KGY+ +T+ + TGD+G GR+
Sbjct: 398 QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRI 457
Query: 539 K--IIDRKKNIF 548
K II KN +
Sbjct: 458 KDLIIIYGKNHY 469
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-31
Identities = 87/534 (16%), Positives = 160/534 (29%), Gaps = 134/534 (25%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
H + + + ++ DG +T+ + V
Sbjct: 18 GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAIT---LTWSQLYRRTLNVAQE 74
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP---DAVKYIVNHASV 186
L G S G + + E+++ I+VPL G + +++ +S
Sbjct: 75 LSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP 133
Query: 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246
A+ ++ ++ ++ P +I +D L N
Sbjct: 134 VAILTTSSAVDDVVQHVARRPGESPPSIIE-VDL-------------------LDLDAPN 173
Query: 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVY 300
F + A + YTSG+T TP G V+SH N+ + A P+
Sbjct: 174 GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYA 359
+S+LP H M + G+ G L ++ L RP + L +
Sbjct: 234 VSWLPFYH-------DMGLVIGICAPILGGYPAVLTSPVSFLQRPARW---MHLMASDFH 283
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-----GRVR 414
++A N A+ L + D G +
Sbjct: 284 AFSAA-----------PNFAF------------------ELAARRTTDDDMAGRDLGNIL 314
Query: 415 FMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG---------- 458
+ SG+ + + F F + + Y + E + ++ G
Sbjct: 315 TILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDT 374
Query: 459 DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
++LS P + +++VD + CP GEI V G
Sbjct: 375 ESLSAGHAKPCAGGGATSLISYMLP-RSPIVRIVD-SDTC-----IECPDGTVGEIWVHG 427
Query: 501 PLIFKGYYKDEIQTKEVI-----------DEDGWFHTGDIGMWIPGGRLKIIDR 543
+ GY++ +++ E W TGD G G++ II R
Sbjct: 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 2e-12
Identities = 44/261 (16%), Positives = 77/261 (29%), Gaps = 32/261 (12%)
Query: 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
NL P P D + + GTTG PK V + A ++ G
Sbjct: 82 NLVPQGLP-ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG------------YQ 128
Query: 306 LAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364
N + + +G VG + + M V R + G T+
Sbjct: 129 HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRS---LSEGDTAT 185
Query: 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLV-FNKIKDKLGGRVRFMGSGASPL 423
VR + L P+ L+ ++ ++ + + G + L
Sbjct: 186 VRKYTHHLVDQVQNTLMNQDIRFLVT--TPPVLRELLKRPEVVLQMKQSLAQITLGGTEL 243
Query: 424 SPDVLDFL--KICFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVP 480
+ D + F+ +I + YG T + L ++ S + +VD
Sbjct: 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVD-S 302
Query: 481 EMNYTSEDQPCP---RGEICV 498
Q RG + V
Sbjct: 303 I-----TAQTVEYGERGNVIV 318
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
++ + +Q LP T + + S+ P+D A I YTSGTT
Sbjct: 562 AACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPAT--AIDPNDPAYIMYTSGTT 619
Query: 269 GTPKGAVLSHGNLI 282
G PKG + +H N+
Sbjct: 620 GKPKGNITTHANIQ 633
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
R+++ + I ++ V+I + + +NL P K D+A + YTSGTT
Sbjct: 137 ARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHV--PSKSTDLAYVIYTSGTT 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
G PKG +L H + D
Sbjct: 195 GNPKGTMLEHKGISNLKVFFENSLNVTEKDR 225
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 53/362 (14%), Positives = 101/362 (27%), Gaps = 119/362 (32%)
Query: 220 DQIPSLPITTGVQIL------TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
+ + + ++L NL +Q S++ P + A + YTSG+TGTPKG
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE--NLDAYLLYTSGSTGTPKG 192
Query: 274 AVLSHG---NLIASVAGATLGT-----KFYPSDVYISYLPL---AHIYERANQVMTVYSG 322
+S + + + ++ HI E + G
Sbjct: 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE---MFLAWRFG 249
Query: 323 VAVGFYQGDNMKLMDDMAAL----RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
+ G+ + ++DD+ T VP S + +G + E
Sbjct: 250 LCA--VTGERLSMLDDLPRTFRELGVTHAGIVP-----------SLLDQTGLVPEDA--- 293
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
P + ++G G ++P
Sbjct: 294 --------------PH------------------LVYLGVGGEKMTPRTQQIWSSSDRVA 321
Query: 439 VTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
+ YG TE + C ++ + +G P ++ ++ +
Sbjct: 322 LVNVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDSVAHVLA------PGSNEHVKKGMA 374
Query: 494 GEICVRGPLIFKGY-----------------YKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
GE+ + G L+ GY Y+ TGDI
Sbjct: 375 GELVIEGSLVANGYLNRPDAKGFCDINGRKMYR----------------TGDIVRMDADS 418
Query: 537 RL 538
+
Sbjct: 419 SI 420
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
G+ + +L + S +P D +A I ++SGTTG PK +H I +
Sbjct: 139 NGLPCVPVRHLPAAPASVARP--CFAADQIAYINFSSGTTGRPKAIACTHAG-ITRLCLG 195
Query: 289 TLGTKFYPSDV 299
F P
Sbjct: 196 QSFLAFAPQMR 206
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
+Q ++ LL ++ K + I YTSG+TG PKG +S NL
Sbjct: 116 QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQ 169
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 221 QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
+ LP+ + + + P K D+ I YTSG+TG PKG +++
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 281 LI 282
L+
Sbjct: 169 LV 170
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
++ + V + + + K DD I +TSGTTG PKG +SH NL+
Sbjct: 114 TIEGISLVSLSEIESAKLAE-MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 35/280 (12%), Positives = 79/280 (28%), Gaps = 61/280 (21%)
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNM--KLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
HI + V + + M K +++ LR Y + + I +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRIN--------YKFLMSPIKTEQ 102
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD--RL-VFNKIKDKL-----GGRVRF-- 415
R + Y ++ + + ++ RL + K++ L V
Sbjct: 103 RQPSMMTRM-----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 416 M-GSGASPLSPDVLDFLKI--CFGGRV---TEGYGMTETSCLISQLDEGDNLSGHVGSPN 469
+ GSG + ++ DV K+ ++ + + L L + PN
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ----KLLYQI-DPN 212
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK-----DEIQTKEVIDEDGWF 524
++ S +R L K Y +Q + + F
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAE-------LRRLLKSKPYENCLLVLLNVQNAKAWNA---F 262
Query: 525 HTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENV 564
++ ++ + R K + +++
Sbjct: 263 ---NLSC-----KILLTTRFKQVTDFLSAATTTHISLDHH 294
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 615 | |||
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.96 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.88 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.75 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 98.59 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 98.55 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.93 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.8 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 91.4 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 81.13 |
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-75 Score=637.45 Aligned_cols=461 Identities=26% Similarity=0.369 Sum_probs=393.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|.++++++||++|+++. ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---AN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34589999999999999999999763 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .+ .++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988777766554332 23 244444321 12356
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc----CcccCCCcEEEEcCChHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~~ 311 (615)
++++...... ..+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 7777654433 22334567899999999999999999999999999988765543 356789999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 865 567899999999987 799999999999999999999999998865200
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (615)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0111125899999999999999999999998 89999999999998665432 22335678
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999987788888887 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++. .++++++++++
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~ 500 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ 500 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 9999997 8999999999999999999999999996644 4789999864 47899999865
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-75 Score=642.75 Aligned_cols=469 Identities=23% Similarity=0.325 Sum_probs=344.8
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|.++++++|+++|++... ++. ..+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~--~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAH--IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETT--TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecC--CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 34799999999999999999986331 221 12579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888877778888888877653211 123456
Q ss_pred HHHHhcCccC------CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---cccCCCcEEEEcCChH
Q 007169 237 SNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (615)
Q Consensus 237 ~~l~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~ 307 (615)
.++....... ..+.....++|+++|+|||||||.||||++||++++..+...... .++.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 6665432221 111122345789999999999999999999999999887766554 5678999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998876210
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCCCCc
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (615)
......++||.+++||+++++++.+++++.|++. ++++||+||+++.++.....+...+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998877776666788999
Q ss_pred CCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 007169 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (615)
Q Consensus 466 G~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (615)
|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999988888888887 89999999999999999999999999999999999999999999999999999
Q ss_pred CeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHcC
Q 007169 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASEG 604 (615)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~~ 604 (615)
|+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++.+ +++.++++++-
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l 506 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 506 (550)
T ss_dssp --------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhc
Confidence 99997 8999999999999999999999999997754 57888888643 56777777643
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-74 Score=634.19 Aligned_cols=465 Identities=23% Similarity=0.328 Sum_probs=386.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCc--cCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
+..|+.++|.++++++||++|+.+. ++. .+..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 4578999999999999999999886 421 23346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+ ++.++.++.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988887777665544 5566665531 24
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
+++++...+...........++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~ 238 (549)
T 3g7s_A 159 SLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL 238 (549)
T ss_dssp CHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH
T ss_pred CHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH
Confidence 56777665443222222223489999999999999999999999999999888877788999999999999999999888
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.++..|+++++.+ +++..+++.++++++|+++++|+++..+++.......
T Consensus 239 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 291 (549)
T 3g7s_A 239 VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK--------------------------- 291 (549)
T ss_dssp HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC---------------------------
T ss_pred HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc---------------------------
Confidence 777899999999987 8999999999999999999999999998874321100
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH----hC---CccccccccccccccccccCCCC-CCCCCc
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGHV 465 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~----~g---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~v 465 (615)
....+++|.+++||+++++++.+++.+. ++ +++++.||+||++.+++...... ...+++
T Consensus 292 -------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 358 (549)
T 3g7s_A 292 -------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358 (549)
T ss_dssp -------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSC
T ss_pred -------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCc
Confidence 0011589999999999999999999887 66 88999999999998776654433 567899
Q ss_pred CCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC--CCC--eeecccEEEEecCCcEEEE
Q 007169 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 466 G~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i~ 541 (615)
|.|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++|+||+|+|+
T Consensus 359 G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~ 435 (549)
T 3g7s_A 359 GVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQ 435 (549)
T ss_dssp CEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEE
T ss_pred cccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEe
Confidence 999999999999988888888887 899999999999999999999999983 677 9999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHHHHHHHHHc
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDALKAWAASE 603 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~l~~~~~~~ 603 (615)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .++++++++++
T Consensus 436 GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~ 507 (549)
T 3g7s_A 436 DRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER 507 (549)
T ss_dssp EEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTT
T ss_pred ccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHh
Confidence 999999997 8999999999999999999999999997754 4788999864 36889999865
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-74 Score=630.81 Aligned_cols=461 Identities=25% Similarity=0.322 Sum_probs=371.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.|+.++|.++++++||++|+.+. +. +..+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 68999999999999999999864 21 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.... . ....|++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~ 162 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYEE 162 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHHH
Confidence 99999999999999999999999999999999999887777776666777777777654221 0 1246666
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhh--ccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
+...... .....++++++|+|||||||.||||++||+++++..... ...+++.++|++++++|++|.+++...+
T Consensus 163 ~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (541)
T 1v25_A 163 ALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 238 (541)
T ss_dssp HCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHH
T ss_pred HhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHH
Confidence 6543221 134567899999999999999999999999998876653 3446788999999999999999987777
Q ss_pred HHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 007169 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (615)
Q Consensus 317 ~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (615)
.+++.|+++++.+ .++..+++.++++++|+++++|+++..|++......
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------- 289 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------------- 289 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----------------------------
Confidence 8899999999986 599999999999999999999999999877422110
Q ss_pred chhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCCC
Q 007169 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (615)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (615)
...++||.+++||+++++++.+++ +.+|++++++||+||++.+++...... ...+
T Consensus 290 -------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (541)
T 1v25_A 290 -------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355 (541)
T ss_dssp -------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred -------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence 011589999999999999999999 567999999999999987666543321 1347
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCC-CCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~-~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
++|+|+++++++|+| ++++.++. +. +.|||+|+|++++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+|
T Consensus 356 ~~G~p~~~~~~~i~d-~~g~~~~~~~~--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 356 KTGLPIPLVRLRVAD-EEGRPVPKDGK--ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp SCBEECTTCEEEEEC-TTSCBCCSSSC--CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred CCCCcCCCcEEEEEC-CCCCCCCCCCC--cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence 899999999999999 55666653 22 279999999999999999999999999879999999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCC
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGI 605 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~~ 605 (615)
|+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.++++++.+
T Consensus 433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L 502 (541)
T 1v25_A 433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF 502 (541)
T ss_dssp ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CC
T ss_pred cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccC
Confidence 99999996 9999999999999999999999999998764 5789999864 3567788877444
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-74 Score=630.85 Aligned_cols=464 Identities=19% Similarity=0.254 Sum_probs=395.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
.++..+++|+++++++||++|+.+. +.. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4556669999999999999999875 322 345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch--HHHHhhhccCCCc-eEEEEECCCCCCCCCCCcCCCceE
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
||+++|+++||+++.++.+++.+++++++++++|++.+.. +.+.+....++.+ ..++.++... ...+
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 199 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEGW 199 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTTC
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------cccc
Confidence 9999999999999999999999999999999999988755 5555555555554 5566665421 1124
Q ss_pred eeHHHHHhcCccCCCCC---CCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHH
Q 007169 234 LTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 310 (615)
.++.+...........+ ....++|+++|+|||||||.||||+++|.+++..+.......++.+++++++.+|++|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence 66777665443322211 246789999999999999999999999999988877766667889999999999999998
Q ss_pred HHHH-HHHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 311 ERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
+... .+.++..|+++++++ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 280 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------- 334 (580)
T 3etc_A 280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------- 334 (580)
T ss_dssp HHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-------------------------
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-------------------------
Confidence 8775 566889999998873 79999999999999999999999998886510
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcC
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (615)
......++||.+++||+++++++.+++++.+|++++++||+||++..++.........+++|
T Consensus 335 ------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G 396 (580)
T 3etc_A 335 ------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIG 396 (580)
T ss_dssp ------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCB
T ss_pred ------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccc
Confidence 00011258999999999999999999999999999999999999877666555567789999
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec-----CcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg-----~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (615)
+|+|+++++|+| ++++.++.|+ .|||+|+| ++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+
T Consensus 397 ~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~ 471 (580)
T 3etc_A 397 KPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471 (580)
T ss_dssp EECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEE
Confidence 999999999999 5678888887 89999997 789999999999999999 6999999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++
T Consensus 472 GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~ 544 (580)
T 3etc_A 472 GRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNV 544 (580)
T ss_dssp EESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred ecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhh
Confidence 999999997 7999999999999999999999999997755 47889998753 4688888875
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-74 Score=630.07 Aligned_cols=463 Identities=23% Similarity=0.318 Sum_probs=391.9
Q ss_pred CCCCHHH-HHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...|+.+ +|.++++++ |++|+.+. ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999753 11 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|++++|+++.++.+++.+++++++++++|++....+.+......++....++.++.... .. .+..
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999999887777666555555556666543210 00 1245
Q ss_pred HHHHHhcCccCCCCCCCCC-----C-CCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---cccCCCcEEEEcCCh
Q 007169 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl 306 (615)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++++.+...... +++.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 7777654321101111122 4 899999999999999999999999999988877665 678899999999999
Q ss_pred HHHHHHHHHH-HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 307 AHIYERANQV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 307 ~h~~~~~~~~-~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
+|.+++...+ .++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 9999987744 556 999999887 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (615)
......+++|.+++||+++++++.+++++.| +++++++||+||++..++.........+
T Consensus 303 --------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 --------------------LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp --------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred --------------------cccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0001125899999999999999999999998 6889999999999877666544456778
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|+|+|+++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999987888888887 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ .++++++++++
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 507 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHh
Confidence 9999997 9999999999999999999999999998754 4788999864 46889999864
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-74 Score=630.82 Aligned_cols=457 Identities=21% Similarity=0.257 Sum_probs=384.7
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..|+.++|.++++++||++|+.+. + +++||+||+++++++|++|.++|+++||+|+|+++|+++|+++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCce
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (615)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.++..+...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 22233333456666666554311
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (615)
.+.++...... ........++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 01112211111 112234578999999999999999999999999999988877777888999999999999999998
Q ss_pred HH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 313 ~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+++.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 74 677899999999987 79999999999999999999999999987642110
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSP 468 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (615)
....++||.+++||+++++++.+++++.+|++++++||+||++..++..... ....+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 0011589999999999999999999998999999999999975433321111 1234789999
Q ss_pred CCC-eeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 007169 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (615)
Q Consensus 469 ~~~-~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (615)
+++ .+++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 975 5899999 6677788887 8999999999999999999999999988999999999999999999999999999
Q ss_pred EEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCCC
Q 007169 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGIQ 606 (615)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~~~ 606 (615)
||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++++++++++++
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~ 498 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLA 498 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 995 9999999999999999999999999997654 4789999864 57899999987664
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-73 Score=624.52 Aligned_cols=461 Identities=18% Similarity=0.233 Sum_probs=392.9
Q ss_pred CCCCHHHHHHHHHHh-----cCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHh
Q 007169 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e 150 (615)
..+++.++|++.+++ +||++|+.+. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 345678999999999 9999999875 322 2246799999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCC
Q 007169 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (615)
Q Consensus 151 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (615)
|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+......++.++.++.++.... .
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 182 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------D- 182 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------T-
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------c-
Confidence 9999999999999999999999999999999999999999999888877776667777777777754210 0
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHH--HHHhhccCcccCCCcEEEEcCChHH
Q 007169 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~--~~~~~~~~~~~~~~d~~l~~lPl~h 308 (615)
....++++....... .+.....++|+++|+|||||||.||||++||+ ++. ..... ..+++.++|++++.+|++|
T Consensus 183 -~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 183 -GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 134677776543321 22234578999999999999999999999999 554 44444 5678899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
.+++.. .+.++..|+++++.+ +++..+++.++++++|+++++|++++.+.+. .
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---~-------------------- 315 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---D-------------------- 315 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS---C--------------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc---c--------------------
Confidence 999874 667899999999885 6999999999999999999999999988652 0
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (615)
......+++|.+++||+++++++.+++++.+|++++++||+||++..++.........++
T Consensus 316 --------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 316 --------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp --------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred --------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 000012589999999999999999999998999999999999998766554444567789
Q ss_pred cCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEe-----cCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEE
Q 007169 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (615)
Q Consensus 465 vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vr-----g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (615)
+|+|+++++++|+| ++++.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6678888887 8999999 9999999999999999999 68999999999999999999
Q ss_pred EEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----------HHHHHHHHHc
Q 007169 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----------DALKAWAASE 603 (615)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~l~~~~~~~ 603 (615)
|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++++ ++++++++++
T Consensus 451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~ 527 (570)
T 3c5e_A 451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSV 527 (570)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhh
Confidence 99999999996 8999999999999999999999999997654 47889999753 4577788764
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-73 Score=620.78 Aligned_cols=456 Identities=19% Similarity=0.251 Sum_probs=382.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+...|+.++|.++++++|+++|+++. +. .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999864 22 24699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+....++.+.. ..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999998887776665544332221111110 01
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23344332222 22334567899999999999999999999999999999988887789999999999999999999987
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.+++.|+++++.+ +++..+++.++++++|++.++|++++.+.+...
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 277 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE------------------------------- 277 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH-------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------------------------
Confidence 666666999999887 799999999999999999999999998876311
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCCCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (615)
......+++|.+++||+++++++.++++.. +++++++||+||+++.++..... ....+++|+|.++
T Consensus 278 -----------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 278 -----------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp -----------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred -----------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 111122589999999999999999999987 99999999999998766544332 3567899999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 007169 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (615)
Q Consensus 472 ~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (615)
++++|+| +++..++.| .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 444544444 59999999999999999999999999 7999999999999999999999999999996
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHc
Q 007169 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASE 603 (615)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~ 603 (615)
+|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+. ++++++++++++
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~ 478 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTR 478 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999997654 356777753 357899999875
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-73 Score=619.65 Aligned_cols=451 Identities=26% Similarity=0.347 Sum_probs=379.2
Q ss_pred HHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 007169 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (615)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 162 (615)
++|.+.++++|+++++.... ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AA----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 46888999999999998641 11 1469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhc
Q 007169 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (615)
Q Consensus 163 ~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (615)
+++||+++.++.+++.+++++++++++|++....+.+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998766554443332221 3333332110 112222222
Q ss_pred CccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-HHHHHHh
Q 007169 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (615)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~ 321 (615)
.. .........++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 AS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp SC-SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred CC-CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 11 122334567899999999999999999999999999999888888889999999999999999998765 5678899
Q ss_pred CcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 007169 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (615)
Q Consensus 322 G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 400 (615)
|+++++.+ +++..+++.++ ++|+++++|+++..+++...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99999887 79999999998 89999999999998865200
Q ss_pred hHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecC
Q 007169 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (615)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~ 480 (615)
......+++|.+++||+++++++.+.+.+.+|+++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987765544455677899999999999999988
Q ss_pred CCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHH
Q 007169 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (615)
Q Consensus 481 ~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~ 560 (615)
+++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 888888887 8999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 561 IENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
||++|.+||+|.+++|+|.+++ +.++|+|+++ .+++.++++++
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 465 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ 465 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTT
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 9999999999999999997654 4788999874 46788888754
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-74 Score=628.15 Aligned_cols=461 Identities=18% Similarity=0.218 Sum_probs=339.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|.++++++||++|+.+. + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+.......+....++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 333333334455666666654211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (615)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555544333223334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Q 007169 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (615)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (615)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+++......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 874 667899999999987 799999999999999999999999999877421100
Q ss_pred cCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 007169 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (615)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (615)
...++||.+++||+++++++.+++++.+|+++++.||+||++..++.....+ ...+++|+
T Consensus 304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0015899999999999999999999999999999999999875544332221 23468999
Q ss_pred CC-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 468 p~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
|+ ++++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 7778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----HHHHHHHHHcCC
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----DALKAWAASEGI 605 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----~~l~~~~~~~~~ 605 (615)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++.+ ++++++++++.+
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l 506 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGI 506 (544)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 9995 9999999999999999999999999997654 57889998753 456677766444
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-72 Score=628.29 Aligned_cols=475 Identities=17% Similarity=0.263 Sum_probs=391.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...++++++|+++++++||++|+++. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34577899999999999999999875 332334578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch---------HHHHhhhccCC--CceEEEEECCCCCCCCC
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVP--TVRLIVVIGGIDDQIPS 224 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~l~~ii~~~~~~~~~~~ 224 (615)
|||+++|++++|+++.++++++.+++++++++++|++.... +.+.+.....+ .++.+++++.......
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~- 228 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID- 228 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence 99999999999999999999999999999999999987542 23333333332 4667777764321110
Q ss_pred CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHH-hhccCcccCCCcEEEEc
Q 007169 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (615)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (615)
. .. .....|++++..... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 229 ~--~~-~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 229 W--QE-GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp C--CB-TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred c--cC-CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 0 00 123578888764322 1223345689999999999999999999999999887654 33445788999999999
Q ss_pred CChHHHHHHH-HHHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHH
Q 007169 304 LPLAHIYERA-NQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (615)
Q Consensus 304 lPl~h~~~~~-~~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (615)
+|++|+++.. ..+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.|.+.....
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 371 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA------------- 371 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG-------------
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc-------------
Confidence 9999999985 4678999999999986 37899999999999999999999999886521000
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Cccccccccccccccccc
Q 007169 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (615)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~ 454 (615)
.+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 372 ---------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 372 ---------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp ---------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred ---------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence 01111268999999999999999999999888 899999999999876665
Q ss_pred cCCC--CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec--CcccccccCChhhhhhccC--CCCeeeccc
Q 007169 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (615)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD 528 (615)
..+. ....+++|+|+++++++|+| ++++.++.|. .|||+|+| |++++|||++|+.+.+.|. .+|||+|||
T Consensus 425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 5432 35678999999999999999 5667777766 89999999 7999999999999988762 489999999
Q ss_pred EEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHH
Q 007169 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DAL 596 (615)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l 596 (615)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++++ +++
T Consensus 501 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l 579 (652)
T 1pg4_A 501 GARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEV 579 (652)
T ss_dssp EEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHH
Confidence 9999999999999999999998 8999999999999999999999999997654 47999999753 467
Q ss_pred HHHHHHc
Q 007169 597 KAWAASE 603 (615)
Q Consensus 597 ~~~~~~~ 603 (615)
+++++++
T Consensus 580 ~~~l~~~ 586 (652)
T 1pg4_A 580 RNWVRKE 586 (652)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888765
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-72 Score=609.72 Aligned_cols=448 Identities=20% Similarity=0.255 Sum_probs=371.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
++|+.++|+++++++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+|+++|+++|+++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999753 211 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEE--cccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|+++|++++|+++.++.+++.+++++++++++|+ +....+.+... .+.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS---GSGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHH---CCCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhc---cccce-eE---------------------E
Confidence 9999999999999999999999999999999999 66554444121 12222 22 2
Q ss_pred HHHHHhcCc----cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCccc--CCCcEEEEcCChHHH
Q 007169 236 YSNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHI 309 (615)
Q Consensus 236 ~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~--~~~d~~l~~lPl~h~ 309 (615)
++++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 222222110 11111234568999999999999999999999999999988877766777 889999999999999
Q ss_pred HHHH-HHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 310 YERA-NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 310 ~~~~-~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
+++. ..+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 9985 4677899999999987 799999999999999999999999999876310000
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCC
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (615)
.....++||.+++||+++++++.+++++.+++.+++.||+||++. +.... ....+++|.
T Consensus 267 ------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~ 325 (504)
T 1t5h_X 267 ------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMA 325 (504)
T ss_dssp ------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--SCSSSSEEB
T ss_pred ------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--CCCCCcccc
Confidence 000115899999999999999999999999999999999999943 22221 345688999
Q ss_pred CCCCeeEEEeecCCC--CCCCCCCCCCcceEEEe-cCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC
Q 007169 468 PNAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (615)
Q Consensus 468 p~~~~ev~ivd~~~~--~~~~~~~~~~~GEi~vr-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (615)
|.++++++|+|.++. +.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999995432 6667776 8999999 9999999999999999999 7999999999999999999999999
Q ss_pred CCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCC
Q 007169 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGI 605 (615)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~~ 605 (615)
||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+||+++.+
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L 470 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSC
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccC
Confidence 999996 9999999999999999999999999998764 5799999974 4689999987444
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=622.46 Aligned_cols=467 Identities=18% Similarity=0.227 Sum_probs=386.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLI 153 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~V~i~~~n~~e~~~ 153 (615)
....++++++|.++++++||++|+++. +...+..+++||+||.+++.++|++|+ ++|+++||+|+|+++|++||++
T Consensus 78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~ 154 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154 (663)
T ss_dssp TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence 345678999999999999999999875 332334578999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch---------HHHHhhhccCCCceEEEEECCCCCCCCC
Q 007169 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPS 224 (615)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 224 (615)
++|||+++|++++|+++.++.+++.++|++++++++|++.... +.+.+....++.++.+++++........
T Consensus 155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999987643 2344555556777788877653210000
Q ss_pred CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHh-hccCcccCCCcEEEEc
Q 007169 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISY 303 (615)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 303 (615)
. .......|+++...... ..+..+..++|+++|+|||||||.||||++||++++..+.. ....+++.++|+++++
T Consensus 235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01123578887754322 12334457899999999999999999999999998766543 3445788999999999
Q ss_pred CChHHHHHHH-HHHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHH
Q 007169 304 LPLAHIYERA-NQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (615)
Q Consensus 304 lPl~h~~~~~-~~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (615)
+|++|+++.. ..+.+++.|+++++++ .++..+++.|+++++|+++++|++++.|.+...
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------- 375 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------- 375 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc---------------
Confidence 9999999985 4678999999999986 378999999999999999999999988754100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Cccccccccccccccccc
Q 007169 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (615)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~ 454 (615)
.. .+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 376 --------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 376 --------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp --------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred --------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence 00 00111258999999999999999999999888 899999999999876655
Q ss_pred cCC---CCCCCCCcCCCCCCeeEEEeecCCCCCCCC-CCCCCcceEEEec--CcccccccCChhhhhhccC--CCCeeec
Q 007169 455 LDE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (615)
Q Consensus 455 ~~~---~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~-~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~~--~~gw~~T 526 (615)
..+ .....+++|+|+++++++|+|.++++.++. |. .|||+|+| |+++.|||++|+.+.+.|. .+|||+|
T Consensus 431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 433 235678999999999999999546777666 55 89999999 5899999999999988873 3899999
Q ss_pred ccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~ 575 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLK 575 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC
T ss_pred CCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEc
Confidence 999999999999999999999997 8999999999999999999999999998754 5799999974
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-72 Score=622.38 Aligned_cols=439 Identities=19% Similarity=0.216 Sum_probs=319.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...++.++|+++++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999763 2 36999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++||+++.++.+++.+++++++++++|++...... +.....++..+..
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~----------------- 198 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEA----------------- 198 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeeccc-----------------
Confidence 9999999999999999999999999999999999998764332 2222222221110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
.. ............++|+++|+|||||||.||||++||+++++.+.. ...+++.++|++++++|++|..+....
T Consensus 199 ----~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 199 ----AS-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ----cc-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 00 001111223457899999999999999999999999999877654 445678899999999999998777777
Q ss_pred HHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999976 6899999999999999999999999988763110
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (615)
..++||.+++||++++++..+.+.+.+ +++++++||+||+++.++..... .....++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 014899999999999999999888877 78999999999998766543221 234567999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCC--------CeeecccEEEEecCCcEE
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~--------gw~~TGDlg~~~~dG~l~ 539 (615)
|+++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|+++|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6678888887 89999999999999999999999998543 799999999999999999
Q ss_pred EEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHc
Q 007169 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASE 603 (615)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~ 603 (615)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++|+++
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~ 536 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEA 536 (570)
T ss_dssp EEEC----------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhh
Confidence 99999999997 9999999999999999999999999997654 57889988642 4677777764
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-72 Score=609.66 Aligned_cols=450 Identities=21% Similarity=0.280 Sum_probs=331.5
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3479999999999999999999763 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++++|++....+.+......++.++.++.++.... .+
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 140 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF 140 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence 9999999999999999999999999999999999999888776666667777777777654211 12
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
.++.........+.....++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++.+|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111222233456789999999999999999999999999999998888888999999999999999999998877
Q ss_pred HHHHhCcEE-EEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 317 MTVYSGVAV-GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 317 ~~l~~G~~i-~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
.++..|++. ++..+++..+++.++++++|+++++|+++..+++...
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------------- 267 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------------- 267 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------------
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------------
Confidence 655555444 4444899999999999999999999999999876310
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCCCcCCCCCCeeE
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev 474 (615)
....+++|.+++||++ +..+.+.+.+ ++++++.||+||++++++..... ....++|+|++++++
T Consensus 268 -----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 268 -----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTV 332 (509)
T ss_dssp -----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEE
T ss_pred -----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEE
Confidence 0011489999999988 7888888888 89999999999998776654433 233459999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC--CCeEEcCC
Q 007169 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK--KNIFKLAQ 552 (615)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~--~d~ikl~~ 552 (615)
+|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~ 406 (509)
T 3ivr_A 333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G 406 (509)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence 9999 5678888887 89999999999999999999999999 5999999999999999999999999 999996 9
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~ 603 (615)
|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 466 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL 466 (509)
T ss_dssp ------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999997754 46889988643 5677777654
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-71 Score=606.49 Aligned_cols=460 Identities=20% Similarity=0.259 Sum_probs=375.5
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
.++++.++|+++++ +||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34569999999999 9999999753 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCc-eEEEEECCCCCCCCCCCcCCCceEee
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.+ ..++.++.... .+.....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988777666654444444 45555543210 0011235
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHH-HHHHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
++++...... ..+.....++|+++|+|||||||.||||++||+++ .+........+++.++|++++.+|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 6776653322 12233457899999999999999999999999999 666665556678899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 315 -~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
.+.++..|+++++.+ +++..+++.++++++|+++++|+++..+++..
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------ 292 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------------ 292 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------------
Confidence 456899999999873 79999999999999999999999998876510
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (615)
...... . .++|.+++||+++++++.+++++.+|++++++||+||++.+++.....+...+++|+|+++
T Consensus 293 ~~~~~~-----------~-~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 293 NLPARA-----------D-VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp TCCCGG-----------G-CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred cccccc-----------C-CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 000000 0 3799999999999999999999999999999999999976665555555677899999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 007169 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (615)
Q Consensus 472 ~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (615)
++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 434 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV- 434 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence 9999999 6778888887 89999999999999999999999999 5899999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeCH---------HHHHHHHHHc
Q 007169 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
+|++|+|.+||++|.+||+|.+++|++... .+.++|+|++.+ ++++++++++
T Consensus 435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~ 497 (529)
T 2v7b_A 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR 497 (529)
T ss_dssp ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh
Confidence 899999999999999999999999999732 247899998642 3577888753
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-71 Score=611.61 Aligned_cols=439 Identities=19% Similarity=0.268 Sum_probs=368.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|.+.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++||+++.++.+++.+++++++++++|++......+.... ....++.++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443221 111233322110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
+... .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...
T Consensus 167 ---~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---IKIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---TTTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---hccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0000 00111234568899999999999999999999999999888877777889999999999999999998877
Q ss_pred HHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 5899999999999999999999988765320
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CCCCCcCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (615)
...++|.+++||+++++++.+++++ .++++++||+||++..++...... ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 0148999999999999999999877 478999999999987655433222 355789999
Q ss_pred CCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC------CCeeecccEEEEecCCcEEEEc
Q 007169 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 469 ~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~G 542 (615)
+++++++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|+++|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6677888887 8999999999999999999999999843 4699999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHc
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASE 603 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~ 603 (615)
|+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++++|++++
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~ 494 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEE 494 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhh
Confidence 99999997 9999999999999999999999999997754 4789999864 57899999875
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-71 Score=600.95 Aligned_cols=441 Identities=19% Similarity=0.217 Sum_probs=375.4
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
+|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.+. |.++|++|+++++|+++|++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999753 2 4699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.+++++++++++|++...... .. ........++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999997543210 00 0112345667
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
++...............++|+++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 77654433222334457899999999999999999999999999999988877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+++.|+++++.+ .++..+++.++++++|++.++|+++..++...
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 252 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------------------------------- 252 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------------
Confidence 999999999886 48999999999999999999999998876520
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCCCcCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHVGS 467 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (615)
.......+++|.+++||+++++++.+++++.| +++++++||+||++..++..... .....++|+
T Consensus 253 ----------~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 253 ----------GFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp ----------TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred ----------ccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 00011125899999999999999999999998 89999999999998766543322 245567999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC-CCC--eeecccEEEEecCCcEEEEccC
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDRK 544 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~-~~g--w~~TGDlg~~~~dG~l~i~GR~ 544 (615)
|+++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++ +||+|+|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5678888887 899999999999999999999999983 233 7999999999 59999999999
Q ss_pred CCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHc
Q 007169 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASE 603 (615)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~ 603 (615)
||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++++ ++++++++++
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 468 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAAS 468 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHH
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhh
Confidence 999997 9999999999999999999999999997644 58999999854 4677788764
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-71 Score=603.97 Aligned_cols=442 Identities=19% Similarity=0.235 Sum_probs=369.4
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
+|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.+.|+++||+|+|+++|+++|++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999864 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ . .++.. ..+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~-~~~~~------------------~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-V-RIVSE------------------DNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-S-EEEET------------------HHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-c-ceech------------------hhhhh
Confidence 9999999999999999999999999999999997543210 000 0 01100 01222
Q ss_pred HHhcCc-cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 239 LLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 239 l~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
+..... ....+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 221111 1112233457899999999999999999999999999999888887889999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+++.|+++++.+ .++..+++.++++++|++.++|+++..++...
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 253 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA-------------------------------- 253 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST--------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc--------------------------------
Confidence 999999999987 48999999999999999999999998875410
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----CCCCCcCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (615)
.......+++|.+++||+++++++.+++.+.| ++++++.||+||++..++...... ....++|.
T Consensus 254 ----------~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 254 ----------SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp ----------TCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred ----------cccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 00011125899999999999999999999988 899999999999987665443221 35678999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEEccC
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRK 544 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (615)
|.++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.| +.+|||+|||+|++ +||+|+|+||+
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~ 398 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRL 398 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEG
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEeccc
Confidence 99999999999 6777888887 89999999999999999999999998 45789999999999 79999999999
Q ss_pred CCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHc
Q 007169 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASE 603 (615)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~ 603 (615)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++++ ++++++++++
T Consensus 399 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 469 (512)
T 3fce_A 399 DFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNER 469 (512)
T ss_dssp GGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTT
T ss_pred CCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhh
Confidence 999997 9999999999999999999999999987654 47899999854 3577888764
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-71 Score=611.02 Aligned_cols=437 Identities=17% Similarity=0.144 Sum_probs=363.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
....|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 35679999999999999999999764 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++||+++.++.+++.++++++++++++++....... ..+.. ..
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~----------------------~~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPC----------------------VP 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCE----------------------EE
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCce----------------------ee
Confidence 99999999999999999999999999999999999765432110 01110 11
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
+..... ...........++|+++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|.+++...
T Consensus 146 ~~~~~~--~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLPA--APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCCC--CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCCc--CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 111000 00111223356899999999999999999999999999887765 445788999999999999999999888
Q ss_pred HHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
+.+++.|+++++.+ .++..+++.++++++|+++++|++++.+.+...
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------ 272 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------ 272 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------
Confidence 89999999999864 689999999999999999999999998865200
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (615)
...++||.+++||++++++..+.+...+ +++++|+||+||++..++..... .....++|+
T Consensus 273 ---------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 273 ---------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp ---------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred ---------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 0015899999999999988888776665 88999999999998766543222 245678999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCC-------CeeecccEEEEecCCcEEE
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~i 540 (615)
|+++++++|+|.+....++.|. .|||||+|+++++|||++|+.|+++|..+ +||+|||+|++++||+|+|
T Consensus 338 p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~ 414 (620)
T 4dg8_A 338 AIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF 414 (620)
T ss_dssp ECTTEEEEEECTTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred cccCcEEEEECccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence 9999999999944433366776 89999999999999999999999999543 7999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeCHHHHHHHHHH
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVDQDALKAWAAS 602 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~l~~~~~~ 602 (615)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++.+.+.+.+++++
T Consensus 415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~ 477 (620)
T 4dg8_A 415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLR 477 (620)
T ss_dssp EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHH
T ss_pred EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHH
Confidence 9999999998 8999999999999999999999999987654 46677777666555555554
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-70 Score=607.76 Aligned_cols=460 Identities=20% Similarity=0.249 Sum_probs=388.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|+++++ ||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987654 233333334555666666544211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (615)
..+.+....... .....+..++++++|+|||||||.||||+++|+++++.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 134444433222 22334457899999999999999999999999999999988888888999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Q 007169 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (615)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (615)
+.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 677899999999987 7899999999999999999999999988764221100
Q ss_pred cCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 007169 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (615)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (615)
....+++|.+++||+++++++.+++.+.+++++++.||+||++..++...... ....++|.
T Consensus 298 ------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 00115899999999999999999999999999999999999986544332211 23457899
Q ss_pred CC-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 468 p~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
|+ ++++++|+| ++++.++.|. .|||+|+|+++++|||++|+.|+++|+.+|||+|||+|++++||.|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHcCCC
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASEGIQ 606 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~~~~ 606 (615)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. .++++++++++.++
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp 501 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIA 501 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCC
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCc
Confidence 9997 8999999999999999999999999987643 5788999864 57899999876554
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-71 Score=601.08 Aligned_cols=441 Identities=19% Similarity=0.216 Sum_probs=364.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
+.|+.++|++.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|+++||+++.++.+++.+++++++++++|++.+....+ . +.....+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~----------------------~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E----------------------GISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------------TSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------------cCcccchh
Confidence 999999999999999999999999999999999987542211 1 11233444
Q ss_pred HHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC--cccCCCcEEEEcCChHHHHHHH
Q 007169 238 NLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 238 ~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
++...... .........++|+++|+|||||||.||||++||+++++.+.+.... +.+.+++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 44322111 1122344678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 314 ~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+.....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 257 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--------------------------- 257 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------
Confidence 8888999999999876 389999999999999999999999987754100
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (615)
......+++|.+++||+++++++.+.+.+.+ +++++++||+||++..++..... ....+
T Consensus 258 ---------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 258 ---------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp ---------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred ---------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 0001125899999999999999999999888 89999999999998766543322 13567
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEE
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i 540 (615)
++|+|+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.| +.+|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6677788887 89999999999999999999999998 5678999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC----CeEEEEEEeCH-------------HHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN----SALVAIVSVDQ-------------DALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~~-------------~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|++++ ++++++++++
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence 9999999997 8999999999999999999999999986532 46899999764 3567777654
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-70 Score=641.87 Aligned_cols=468 Identities=25% Similarity=0.357 Sum_probs=344.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.|...|+.++|.++++++||++|+++. +. .+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 346689999999999999999999763 21 14699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++||+++.++++++.+++++++++++|++....+.+....... .+ .++.++..... .......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV------PIPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS------CCCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc------cCCcccc
Confidence 9999999999999999999999999999999999999988776655544332 22 34444432110 0111235
Q ss_pred eHHHHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc----CcccCCCcEEEEcCChHH
Q 007169 235 TYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 235 ~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h 308 (615)
.|.++...... ...+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 56665543322 112334567899999999999999999999999999988766543 356789999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 309 IYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 337 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE------------------------ 337 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG------------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc------------------------
Confidence 999865 567899999999987 799999999999999999999999998876210
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCC
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDN 460 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~ 460 (615)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+...
T Consensus 338 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 338 ------------------TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp ------------------GGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred ------------------ccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 0011125899999999999999999999988 89999999999998765443 22235
Q ss_pred CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEE
Q 007169 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 461 ~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (615)
..+++|+|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999988788888887 899999999999999999999999999999999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. +++++++++++
T Consensus 477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~ 547 (979)
T 3tsy_A 477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ 547 (979)
T ss_dssp EEESCC------------------------------------------------------------------
T ss_pred ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 9999999997 8999999999999999999999999997654 5789999864 35677777764
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-70 Score=590.43 Aligned_cols=450 Identities=20% Similarity=0.235 Sum_probs=361.6
Q ss_pred CHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+. +||+|+|+++|+++|+++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6678899999999999999753 2 3699999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe-eHHH
Q 007169 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYSN 238 (615)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (615)
++|++++|+++.++.+++.+++++++++++|++........... ....+..+......... .. ........ ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGL-LD--NTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccc-cc--cccccccccchhh
Confidence 99999999999999999999999999999999877544332211 11111111111000000 00 00000000 0111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (615)
+...............++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11111100112234578999999999999999999999999999998888888899999999999999999999888889
Q ss_pred HHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007169 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (615)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (615)
++.|+++++.+ +++..+++.++++++|+++++|+++..|.+...
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------- 270 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGL----------------------------------- 270 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC-----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC-----------------------------------
Confidence 99999999987 799999999999999999999999998876310
Q ss_pred hHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCCCCeeEE
Q 007169 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEIK 475 (615)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ 475 (615)
....++|.+++||+++++++.+++++ +++++++.||+||+++.++...+. ....+++|+|+++++++
T Consensus 271 ----------~~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 271 ----------HEPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp ----------CSCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred ----------CCcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 00027999999999999999999987 599999999999998655443332 24678899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeee
Q 007169 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY 555 (615)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~ 555 (615)
|+|++ .+. .|||+|+|+.+++|||++|+.|.+ | .+|||+|||+|++|+||+|+|+||+||+||+ +|++
T Consensus 340 i~d~~------~~~---~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~ 407 (501)
T 3ipl_A 340 IKNPN------KEG---HGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN 407 (501)
T ss_dssp EESCC------SSC---CEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred EecCC------CCC---ccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence 99943 233 799999999999999999999988 6 7899999999999999999999999999995 9999
Q ss_pred echHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHc
Q 007169 556 IAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASE 603 (615)
Q Consensus 556 v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~ 603 (615)
|+|.+||++|.+||+|.+++|+|.+++ +.++|+|++ ++++++++++++
T Consensus 408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~ 462 (501)
T 3ipl_A 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKH 462 (501)
T ss_dssp ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhh
Confidence 999999999999999999999997654 467888886 457899999875
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-70 Score=592.55 Aligned_cols=440 Identities=24% Similarity=0.298 Sum_probs=359.8
Q ss_pred CCCCHHHHHHHHHHhcCC-CceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
++.|+.+.|.++++++|+ ++|+.+. + +.+||+||.++++++|++|. .|++|+|+++|+++|++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 467888888888888887 9999763 2 46999999999999998774 4889999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++|||++.++.+++.+++++++++++|++..... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865210 00111222211 1110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (615)
.....+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233457899999999999999999999999999999988887788999999999999999999875
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 266 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------------- 266 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------------
Confidence 677899999999887 7899999999 88999999999999998763211000
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCee
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~e 473 (615)
....+ +++|.+++||+++++++.+++++.+++++++.||+||++..++.........+++|+|+++++
T Consensus 267 ----~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 267 ----LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp ----HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred ----hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 00001 378999999999999999999999999999999999998777766655677889999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC-CCeEEcCC
Q 007169 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQ 552 (615)
Q Consensus 474 v~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~~ 552 (615)
++|+| +++..++...+.+.|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~ 412 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G 412 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence 99999 45555554111138999999999999999999999999988999999999999999999999998 599996 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~ 603 (615)
|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~ 473 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR 473 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHH
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999997654 58999999753 6888998875
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-69 Score=598.39 Aligned_cols=456 Identities=19% Similarity=0.219 Sum_probs=370.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|.++++++||++|+.+. ++ +..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35689999999999999999999876 32 23467999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCC---CHHHHHHHHHhccceEEEEcccchHHHHhhh-ccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 156 HACSAYSFISVPLYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
|||+++|++++|+++.+ ..+++.++++++++++++++.+....+.... ...+.+..+
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------------------- 143 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI------------------- 143 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------
Confidence 99999999999999988 4578999999999999999987665543322 112211111
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (615)
.+..++++...... ........++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.++
T Consensus 144 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 222 (590)
T 3kxw_A 144 PAIALESIELNRSS-SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMG 222 (590)
T ss_dssp EEEEGGGCCGGGGG-GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred ceeechhccccccc-cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchh
Confidence 11222222111111 12234567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-C----ChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 007169 312 RAN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (615)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (615)
+.. .+.+++.|+++++.+ . ++..+++.++++++|++.++|.++..+.+.+....
T Consensus 223 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------- 282 (590)
T 3kxw_A 223 LIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK-------------------- 282 (590)
T ss_dssp HHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG--------------------
T ss_pred hHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh--------------------
Confidence 987 677899999999986 2 89999999999999999999999998876321100
Q ss_pred HHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------CccccccccccccccccccCCC-
Q 007169 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG- 458 (615)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~~~~~- 458 (615)
......++||.+++||+++++++.+++++.|+ ++++++||+||++.+++...+.
T Consensus 283 -------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~ 343 (590)
T 3kxw_A 283 -------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343 (590)
T ss_dssp -------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTS
T ss_pred -------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCC
Confidence 01111258999999999999999999999873 3699999999998776643221
Q ss_pred --------------------------CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChh
Q 007169 459 --------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (615)
Q Consensus 459 --------------------------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~ 512 (615)
....+++|+|+++ ++|+|++++..++.|+ .|||+|+|+++++|||++|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~ 418 (590)
T 3kxw_A 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPE 418 (590)
T ss_dssp CCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHH
T ss_pred CceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChh
Confidence 1234688999998 8899977688888887 89999999999999999999
Q ss_pred hhhhccCC------CC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHH-hcCCCcc--eEEEEeeCC
Q 007169 513 QTKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVG--QCFVYGDSF 581 (615)
Q Consensus 513 ~t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l-~~~p~V~--~~~V~g~~~ 581 (615)
.|+++|.. +| ||+|||+|++| ||.|+|+||+||+||+ +|++|+|.+||++| ..+|.|. +|+|++.++
T Consensus 419 ~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~ 496 (590)
T 3kxw_A 419 ETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQE 496 (590)
T ss_dssp HHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEE
T ss_pred HHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecC
Confidence 99999953 24 99999999999 9999999999999997 89999999999999 8899998 788888654
Q ss_pred C--CeEEEEEEeCH--------HHHHHHHHH
Q 007169 582 N--SALVAIVSVDQ--------DALKAWAAS 602 (615)
Q Consensus 582 ~--~~~va~vv~~~--------~~l~~~~~~ 602 (615)
+ +.++++|++.+ +++.+++++
T Consensus 497 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~ 527 (590)
T 3kxw_A 497 EHEYKLTVMCEVKNRFMDDVAQDNLFNEIFE 527 (590)
T ss_dssp TTEEEEEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEeccccccchhHHHHHHHHHH
Confidence 3 57788887642 455666554
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-68 Score=584.57 Aligned_cols=442 Identities=16% Similarity=0.145 Sum_probs=316.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEe-ecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVR-VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+..|+.++|+++++++||++|+.+... .+......+++||+||.++++++|++|.+.|+ +||+|+|+++|+++|+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 3567899999999999999999987510 01112234789999999999999999999999 799999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++||+++.++.+++.+++++++++++|++......+ ..+....++..+. .
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~ 154 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------Q 154 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------H
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------h
Confidence 999999999999999999999999999999999999987654321 1111112221110 1
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc--------CcccCCCcEEEEcCCh
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISYLPL 306 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~lPl 306 (615)
.+.+....... ........++++++|+|||||||.||||++||+++.+.+..... .+.+...+++++..|+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (562)
T 3ite_A 155 SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASR 233 (562)
T ss_dssp HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCT
T ss_pred hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCc
Confidence 22233222211 12223456788999999999999999999999999887765432 2457788999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 307 AHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
+|..++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 234 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------------ 289 (562)
T 3ite_A 234 AFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------------ 289 (562)
T ss_dssp TSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------------
T ss_pred hhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------------
Confidence 99998887888999999998865 2457788999999999999999987654220
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCC-CCCCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSG 463 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-~~~~~~ 463 (615)
....++||.+++||+++++++.+++++.++++++++||+||++..++.... .+...+
T Consensus 290 ----------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 347 (562)
T 3ite_A 290 ----------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347 (562)
T ss_dssp ----------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTT
T ss_pred ----------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCc
Confidence 001158999999999999999999998889999999999999876655433 335667
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCC--eeecccEEEEecCCcEEEE
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l~i~ 541 (615)
++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|+..+ .+| ||+|||+|++|+||+|+|+
T Consensus 348 ~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~ 423 (562)
T 3ite_A 348 CIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFL 423 (562)
T ss_dssp EEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred cccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEE
Confidence 89999999999999977777788887 89999999999999999999998876 455 9999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcC-CCcceEEEEeeCCC---C-eEEEEEEe
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKC-KFVGQCFVYGDSFN---S-ALVAIVSV 591 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~-p~V~~~~V~g~~~~---~-~~va~vv~ 591 (615)
||+||+||+ +|++|+|.|||++|.++ |.|.+++|++.+++ + .++++|..
T Consensus 424 GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 477 (562)
T 3ite_A 424 GRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVAS 477 (562)
T ss_dssp EEC----------------------------------------------------
T ss_pred ccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEec
Confidence 999999996 99999999999999998 78889998886644 2 34555543
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-66 Score=618.89 Aligned_cols=441 Identities=21% Similarity=0.272 Sum_probs=373.3
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..++.++|++.++++||++|+.+. + +.+||+||+++++++|++|.+.|+++|++|+|+++|+++|+++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999753 2 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|+++|||+|.++.+++.++++++++++++++....+.+. .++....++.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876543321 122222333332210
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
.. .. ....+.....++++++|+|||||||.||||+++|+++.+. ......+++.++|+++.+.|++|..+....+.
T Consensus 592 ~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 00 1111233457899999999999999999999999999876 44455678899999999999999998888888
Q ss_pred HHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+++.|+++++.+ .++..+.+.|+++++|++.++|++++.+.+....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------------ 717 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------------ 717 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------------
Confidence 999999999986 5899999999999999999999999988652000
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCC----CCCCCCcCCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEG----DNLSGHVGSP 468 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p 468 (615)
.+ .+||.+++||+++++++.+.+.+.++ ++++|+||+||++..++..... .....++|+|
T Consensus 718 -------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 718 -------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp -------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred -------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 00 37999999999999999999888774 7899999999998766544322 2345689999
Q ss_pred CCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEc
Q 007169 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 469 ~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
+++++++|+| ++++.++.|. .|||||+|+++++||+|+|+.|+++|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6678888887 899999999999999999999999993 34599999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHc
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASE 603 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~ 603 (615)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++|+|+++ .++++++++++
T Consensus 859 R~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~ 925 (1304)
T 2vsq_A 859 RIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQ 925 (1304)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999998 8999999999999999999999999997643 5899999964 57899998875
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-63 Score=533.03 Aligned_cols=400 Identities=18% Similarity=0.219 Sum_probs=318.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|+++++++||++|+.+....++..+..+++||+||.++++++|++|.+.|+ +||+|+|+++|+++|++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999998862111223445789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCc--eEEEEECCCCCCCCCCCcCCCc
Q 007169 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
||+++|+++|||++ .++.+++.+++++++++++|++....+.+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999998887777655443322 1233322211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCC------CcEEEEcCC
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~------~d~~l~~lP 305 (615)
... ..........++++++|+|||||||.||||++||+++++.+......+.+.+ +|++++++|
T Consensus 169 ---------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------ccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 000 1112233457889999999999999999999999999998887766666666 999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHH
Q 007169 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (615)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (615)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++| +..+|+++..++......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999875 567899999999986 3899999999999999 889999988876531000
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Ccccccccccccccccc
Q 007169 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (615)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~ 453 (615)
........++||.+++||+++++++.+++++.|+ +.++++||+||++..++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0011112268999999999999999999999874 36999999999998776
Q ss_pred ccCCCC-------------------------CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCccccccc
Q 007169 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (615)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~ 508 (615)
...... ...+++|+|++ ++++|+|.+++..++.|+ .|||+|+|+++++|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 554322 23458999999 999999977678888887 8999999999999999
Q ss_pred CChhhhhhccC-----------CCCeeecccEEEEecCCcEEEEcc
Q 007169 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|++|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=393.18 Aligned_cols=272 Identities=17% Similarity=0.149 Sum_probs=231.3
Q ss_pred CCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHH
Q 007169 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (615)
Q Consensus 255 ~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~ 334 (615)
.||+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|++++...+.++..|+++++... ...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~-~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP-TAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC-CSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc-ccc
Confidence 4789999999999999999999999999999888888999999999999999999999888889999999988762 223
Q ss_pred HHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEE
Q 007169 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (615)
Q Consensus 335 l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr 414 (615)
.++.++++++|++.++|+++..+++.... ....++||
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-------------------------------------------~~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT-------------------------------------------SGQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT-------------------------------------------GGGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc-------------------------------------------cccCCcce
Confidence 46678899999999999999988762100 00114899
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcc
Q 007169 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (615)
Q Consensus 415 ~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~G 494 (615)
.+++||+++++++.+++++ ++++++++||+||+++.++.........+.+|.+.|++++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 59999999999999988877766667788999999999998754 79
Q ss_pred eEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHH---hcCCCc
Q 007169 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY---AKCKFV 571 (615)
Q Consensus 495 Ei~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l---~~~p~V 571 (615)
||+++|+.+ .+|||+|||+|++|+|| ++++||+||+||+ +|++|+|.+||++| .+||+|
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 999998742 68999999999999988 6778999999996 89999999999887 468999
Q ss_pred ceEEEE-eeCCC---CeEEEEEEeCH-----HHHHHHHHHc
Q 007169 572 GQCFVY-GDSFN---SALVAIVSVDQ-----DALKAWAASE 603 (615)
Q Consensus 572 ~~~~V~-g~~~~---~~~va~vv~~~-----~~l~~~~~~~ 603 (615)
.+++|+ +.+++ +.++|+|++.. ++++++|+++
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~ 319 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSR 319 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhh
Confidence 998876 44443 47888888653 5788888875
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=385.70 Aligned_cols=298 Identities=15% Similarity=0.163 Sum_probs=240.9
Q ss_pred EeeHHHHHhcCccCCCCCCCCCC-CCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc---cCcccCCCcEEEEcCChHH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl~h 308 (615)
+.+.+++.+... .......+ +++++|+|||||||.||||++||+++.+.+.... ..+++.++|++++++|+.|
T Consensus 65 ~~~~~~l~~~~p---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (436)
T 3qov_A 65 FTTKSDMRANYP---FGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGM 141 (436)
T ss_dssp CBCHHHHHHTTT---TTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTT
T ss_pred CCCHHHHHhcCC---CccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECccccc
Confidence 345566654321 12233456 8999999999999999999999999977665543 3357889999999999977
Q ss_pred HHHHH-HHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 309 IYERA-NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 309 ~~~~~-~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
..+.. ..+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++.......
T Consensus 142 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 201 (436)
T 3qov_A 142 FTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI-------------------- 201 (436)
T ss_dssp CHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC--------------------
T ss_pred chhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC--------------------
Confidence 66655 4567899999999876 7999999999999999999999999999874322110
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcC
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (615)
.. ..+++|.+++||+++++++.+++++.||++++++||+||+++.++..... .....|
T Consensus 202 -----~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~ 259 (436)
T 3qov_A 202 -----DP---------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMH 259 (436)
T ss_dssp -----CT---------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEE
T ss_pred -----Cc---------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeE
Confidence 00 01489999999999999999999999999999999999996542222111 112366
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCC------c---
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R--- 537 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~--- 537 (615)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++| +
T Consensus 260 ~~~~~~~v~i~d~~~g~~~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~i 323 (436)
T 3qov_A 260 FWEDCYLVEIIDPETGEPVPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRI 323 (436)
T ss_dssp ECTTTEEEEEECTTTCSBCSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEE
T ss_pred EccCceEEEEEECCCCCCCCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCcccc
Confidence 77889999999988889998887 899999983 34455 78999999999999998 5
Q ss_pred EEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeC
Q 007169 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVD 592 (615)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~ 592 (615)
++|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++
T Consensus 324 l~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~ 380 (436)
T 3qov_A 324 DRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS 380 (436)
T ss_dssp CCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc
Confidence 6999999999998 899999999999999999999999998664 36899999985
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=383.82 Aligned_cols=308 Identities=17% Similarity=0.135 Sum_probs=245.3
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc---cCcccCCCcEEEEcCCh-HH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AH 308 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h 308 (615)
+.+.+++.+... .......++++++|+|||||||.||||++||+++...+.... ..+++.++|++++.+|+ +|
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 146 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEccccccc
Confidence 355666654431 112335678999999999999999999999999887654432 24678899999999998 78
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++......
T Consensus 147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~---------------------- 204 (437)
T 2y27_A 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG---------------------- 204 (437)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT----------------------
T ss_pred ccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC----------------------
Confidence 888777788899999998776 699999999999999999999999999887432110
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcC
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (615)
... ..+++|.+++||+++++++.+++++.||+++++.||+||+++. ++...+. ...+ ++
T Consensus 205 ---~~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~~ 264 (437)
T 2y27_A 205 ---LDP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVE-TKDG-PT 264 (437)
T ss_dssp ---CCG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTT-TCSS-CE
T ss_pred ---CCc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCC-CCCc-ee
Confidence 000 0148999999999999999999999899999999999998433 3322221 1112 55
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec-CCcE-----EE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----KI 540 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i 540 (615)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|++++ +|++ +|
T Consensus 265 ~~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i 328 (437)
T 2y27_A 265 IWEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKI 328 (437)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCcc
Confidence 67789999999977788888887 899999982 44556 689999999999999 6986 99
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH---------HHHHHHHHH
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ---------DALKAWAAS 602 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~---------~~l~~~~~~ 602 (615)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.+++++
T Consensus 329 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~ 401 (437)
T 2y27_A 329 TGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAY 401 (437)
T ss_dssp CEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHH
T ss_pred ccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHH
Confidence 9999999997 899999999999999999999998887542 368999999864 346666654
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=382.66 Aligned_cols=308 Identities=15% Similarity=0.121 Sum_probs=245.7
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc---CcccCCCcEEEEcCCh-HH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-AH 308 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl-~h 308 (615)
+.+.+++.+... .......++++++|+|||||||.||||++||+++...+..... .+++.++|++++.+|+ +|
T Consensus 72 ~~~~~~l~~~~p---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 148 (443)
T 2y4o_A 72 FSTKNDLRDNYP---FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148 (443)
T ss_dssp CBCHHHHHTTTT---TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCcHHHHHhhCC---CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCccc
Confidence 456666654431 1123356789999999999999999999999998876544332 4678899999999999 57
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
..++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|++......
T Consensus 149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~---------------------- 206 (443)
T 2y4o_A 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG---------------------- 206 (443)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT----------------------
T ss_pred ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC----------------------
Confidence 777777778899999998876 799999999999999999999999999877432110
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcC
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (615)
.. ...+++|.+++||+++++++.+++++.||+++++.||+||+++. +....+. ...+ .+
T Consensus 207 ---~~---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~~ 266 (443)
T 2y4o_A 207 ---MD---------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVE-TKDG-PV 266 (443)
T ss_dssp ---CC---------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTT-TCCS-EE
T ss_pred ---CC---------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCC-CCCc-eE
Confidence 00 00148999999999999999999999899999999999997443 3222211 1112 45
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC-CcE-----EE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----KI 540 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~i 540 (615)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++ |++ +|
T Consensus 267 ~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i 330 (443)
T 2y4o_A 267 IWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKI 330 (443)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCcc
Confidence 56789999999977788888887 899999983 44556 6899999999999999 987 89
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH-----------HHHHHHHHH
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ-----------DALKAWAAS 602 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~-----------~~l~~~~~~ 602 (615)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.+++++
T Consensus 331 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~ 405 (443)
T 2y4o_A 331 TGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQH 405 (443)
T ss_dssp CEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHH
Confidence 9999999997 899999999999999999999999887542 357899999876 356666654
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=274.25 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=176.1
Q ss_pred CCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhh---ccCcccCCCcEEEEcCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 007169 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (615)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~---~~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~i~~~ 328 (615)
..++++++|+|||||||.||||+++|+++...+.+. ....++.++|++++.+|+ +|.+++...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 467899999999999999999999999999888744 344678899999999999 9999998888889999944333
Q ss_pred cCChH-----------------------HHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 007169 329 QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (615)
Q Consensus 329 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (615)
.+++. .+++.++++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 36777 7788999999999999999999987631100
Q ss_pred HHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHH-HHh-CCccccccccccccccccccCCCCCCCC
Q 007169 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (615)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (615)
....+++|.+++||+++++++.++++ +.| ++++++.||+||+++++..... .
T Consensus 227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 00013899999999999999999999 899 8999999999999876543221 1
Q ss_pred CcCCC------CCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC--
Q 007169 464 HVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-- 535 (615)
Q Consensus 464 ~vG~p------~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-- 535 (615)
++|.| .++++++|+|+++++.++.|+ .|||+|++.. ++.+ --+|+|||++.+.+.
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~ 343 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS 343 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence 58999 999999999976888998887 9999999742 1111 124778888777543
Q ss_pred C-------cEEEEccCCCeEEcCCee
Q 007169 536 G-------RLKIIDRKKNIFKLAQGE 554 (615)
Q Consensus 536 G-------~l~i~GR~~d~ikl~~G~ 554 (615)
| .+..++|.++..|| .|.
T Consensus 344 g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 344 GFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp TCSSCEEEEEEECC------------
T ss_pred CCcCcccccceeccccCCCcee-eec
Confidence 2 34556677777776 454
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-08 Score=107.28 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCC-CCCC-eeEEEeecCCC------
Q 007169 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAA-CEIKLVDVPEM------ 482 (615)
Q Consensus 413 lr~i~~gg~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~ev~ivd~~~~------ 482 (615)
+..+++||. ......++..+ +.+++ .+|++||+... .+......++..+. .+|+ .=+..++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG--LNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee--eecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence 555666662 44445566555 56766 99999997422 22111111122222 1222 22334443332
Q ss_pred ---------CCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEE
Q 007169 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFK 549 (615)
Q Consensus 483 ---------~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ik 549 (615)
..+..|+ .+||.|... .|.|+ |++||+.+++. ...+.|+||.|++|.
T Consensus 382 ~~~~~~v~l~eVe~G~---~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~ 441 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVGK---EYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLS 441 (609)
T ss_dssp SSCCCCEEGGGCCTTC---EEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCccccHhHcCCCC---eEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEE
Confidence 1223343 788988653 35542 99999999984 468999999999999
Q ss_pred cCCeeeechHHHHHHHhc------CCC--cceEEEEeeCCC--CeEEEEEEe---------CHHHHHHHHH
Q 007169 550 LAQGEYIAAEKIENVYAK------CKF--VGQCFVYGDSFN--SALVAIVSV---------DQDALKAWAA 601 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~------~p~--V~~~~V~g~~~~--~~~va~vv~---------~~~~l~~~~~ 601 (615)
+ .|+++.+++||+++.+ ..+ |.|-.++.+... .+-+.++.+ +++.+.++|.
T Consensus 442 ~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~ 511 (609)
T 4b2g_A 442 I-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCL 511 (609)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEEESCGGGCCCHHHHHHHHH
T ss_pred c-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEecccccCCCCHHHHHHHHH
Confidence 7 8999999999999963 223 455555554322 244433332 4566666654
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=100.96 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCCC-CCC-eeEEEeecCCC------
Q 007169 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEM------ 482 (615)
Q Consensus 413 lr~i~~gg~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~ev~ivd~~~~------ 482 (615)
+..+++||. ......++..+ +.+++ .+|+.||+... .+......+..+|.. +|+ .=+..++.++.
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 666666773 44455566555 67777 99999996422 221111111222221 222 22344443322
Q ss_pred --CCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEEcCCeeee
Q 007169 483 --NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYI 556 (615)
Q Consensus 483 --~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v 556 (615)
..+..|+ .+||.|...+ |.|+ |++||+.++.. ...+.|+||.|+++.+ .||++
T Consensus 377 ~l~eVe~G~---~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl 435 (581)
T 4eql_A 377 DLEDVKLGC---TYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKT 435 (581)
T ss_dssp EGGGCCTTC---EEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCE
T ss_pred CHHHcCCCc---eEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeEC
Confidence 1123343 7899987642 3321 89999999986 3579999999999997 89999
Q ss_pred chHHHHHHHhcC
Q 007169 557 AAEKIENVYAKC 568 (615)
Q Consensus 557 ~p~~IE~~l~~~ 568 (615)
++++||+++.+.
T Consensus 436 ~~~~v~~al~~a 447 (581)
T 4eql_A 436 NEEDLFKAVSQA 447 (581)
T ss_dssp EHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH
Confidence 999999999744
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=101.23 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=95.1
Q ss_pred CcEE---EEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCC-CCCCe-eEEEeecCCC-
Q 007169 411 GRVR---FMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAAC-EIKLVDVPEM- 482 (615)
Q Consensus 411 ~~lr---~i~~gg~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-ev~ivd~~~~- 482 (615)
.+++ .+++|+ + ......++..+ +.+++ .+|++||+... .+......++.++. .+|+. =+..+..++.
T Consensus 302 Pnl~~i~~~~~G~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGS--M-EPYVPKLRHYAGDLPLVSHDYGSSEGWIA--ANVTPRLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGG--G-GGGHHHHHHHHTTSCEEECCEEETTEEEE--ECCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCC--h-HHHHHHHHHHcCCCccccCceeccceeee--eecCCCCCccccceeecCCcEEEEEEeccccc
Confidence 4664 344443 2 33445566555 67777 99999997422 22211222222222 22222 1223332221
Q ss_pred ---------CCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC----CcEEEEccCCCeEE
Q 007169 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GRLKIIDRKKNIFK 549 (615)
Q Consensus 483 ---------~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ik 549 (615)
..+..|+ .+||.|...+ |-|. |++||+.++..- ..+.|+||.++++.
T Consensus 377 ~~~~~~v~l~eve~G~---~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGE---EYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ---CCCEEGGGCCTTC---EEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCceeeHHHcCCCC---eEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 1233444 7999997642 3331 899999999742 47999999999999
Q ss_pred cCCeeeechHHHHHHHhc------CCC--cceEEEEeeCCC--CeEEEEEEe----CHHHHHHHH
Q 007169 550 LAQGEYIAAEKIENVYAK------CKF--VGQCFVYGDSFN--SALVAIVSV----DQDALKAWA 600 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~------~p~--V~~~~V~g~~~~--~~~va~vv~----~~~~l~~~~ 600 (615)
+ .|+++++.+||+++.+ ..+ |.|-.++.+... .+-+.++.. +++.+.++|
T Consensus 437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~~~~~~~~l~~~~ 500 (581)
T 4epl_A 437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 500 (581)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEESSCCCHHHHHHHH
T ss_pred e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeecCCCCHHHHHHHH
Confidence 7 8999999999999964 223 556666665432 344444553 445566554
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=5e-08 Score=81.28 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=43.2
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
.|.|||||+ +|.||+|.+||+++.+||+|.+++|++.++. +.++++|+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~ 53 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELS 53 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEe
Confidence 389999997 8999999999999999999999999886543 4677888764
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=1.2 Score=45.91 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=89.3
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (615)
.++.++++.. ..|..|. ...+|.+.+...+..++..+...|+.++|++...++.. ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3455665543 2555443 34579999988888888888888999999999888853 3334557888999999887
Q ss_pred cCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
+.. ..++.+...+++.++.++++....+..+.+... ..+.++.+++-++
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 665 478899999999999999998887776655432 1246776666543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=92.80 E-value=1.3 Score=45.76 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=89.0
Q ss_pred CCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 007169 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (615)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl 168 (615)
++.++++.. ..|..|. ...+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455565443 2555554 34579999988888888888888999999999888863 33445678888999998877
Q ss_pred CCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
... .++.+...+++.++.++++....+..+.+... ..+.++.+++-++
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 654 78899999999999999998887776655422 1256777766543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=1.4 Score=45.48 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=89.9
Q ss_pred CCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 007169 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPLY 169 (615)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~ 169 (615)
+.++++.. ..|..|. ...+|.+.+...+..++..+...|+.++|++..+++-+ ...+..+++++..|+.+++..
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45565544 2555443 34579999998888888888889999999999988753 444556788899999988765
Q ss_pred CCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
. ..++.+...+++.++.+++.....+..+.+... .++.++.+++-++
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 4 467899999999999999998887776655422 1456777776554
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=81.13 E-value=27 Score=36.82 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=85.0
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEE
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LI-VDHACSAYSFISV 166 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~v~v 166 (615)
.|+.+|++.. ..|..|. ...+|.+.+...+..... ..++.++|++...+|-...+ .. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777655 2444332 345799988776655544 34788999998888876443 22 4788899999887
Q ss_pred ecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhh----ccCCCceEEEEECC
Q 007169 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (615)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~ 217 (615)
... ...++.+...+++.++..++.....+..+.+.. ..+++++.+++-++
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 654 567899999999999999999888777665432 24567887776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 615 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-73 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 8e-66 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-65 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-58 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 4e-43 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-42 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-40 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 246 bits (628), Expect = 2e-73
Identities = 79/520 (15%), Positives = 162/520 (31%), Gaps = 86/520 (16%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
+ K ++Y E + L+ GI KG + +Y PE + AC+ + +
Sbjct: 99 SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC-----------LSEVPTVRLIVVIGG 217
+ P+AV + +S + V + + + S V +V ++V+
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218
Query: 218 IDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLS 277
I + L + S +D I YTSG+TG PKG + +
Sbjct: 219 TGSDIDWQEGRD-----LWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 273
Query: 278 HGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG----- 330
G + A ++P D+Y + + + + + G ++G
Sbjct: 274 TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333
Query: 331 DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
++ + + + + P L A + S
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIR------------------ALMAEGDKAIEGTDRS- 374
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG---RVTEGYGMTE 447
+R +GS P++P+ ++ G V + + TE
Sbjct: 375 ---------------------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 413
Query: 448 TS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPL 502
T + + +G P + LVD +E P G + +
Sbjct: 414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-------NEGHPQEGATEGNLVITDSW 466
Query: 503 --IFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAA 558
+ + D + ++ + +GD G I R ++ ++ G +
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS-GHRLGT 525
Query: 559 EKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDA 595
+IE+ + + V G A+ A V+++
Sbjct: 526 AEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE 565
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 222 bits (567), Expect = 8e-66
Identities = 110/545 (20%), Positives = 193/545 (35%), Gaps = 66/545 (12%)
Query: 73 PDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131
P +P E GT + +A+ + GT D + +TY E + +
Sbjct: 10 PFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVN--ITYAEYFEMSVRLAEAMK 65
Query: 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
+G++ I + N ++ + P D + +N + VF
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
+ L +L+ ++P ++ I+++ D + + +T + P S
Sbjct: 126 SKKGLQKILNVQKKLPIIQKIIIM---DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPES 182
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAH 308
+ +A I +SG+TG PKG L H + A G + P +S +P H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242
Query: 309 IYERANQVMTVYSGVA-VGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ + + G V Y+ + + + + VP L++
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA--------- 293
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
K+ L GA
Sbjct: 294 -----------------------KSTLIDKYDL---------SNLHEIASGGAPLSKEVG 321
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
K + +GYG+TET+ I EGD+ G VG E K+VD+
Sbjct: 322 EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 381
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547
+Q GE+CVRGP+I GY + T +ID+DGW H+GDI W I+DR K++
Sbjct: 382 NQR---GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 438
Query: 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKA 598
K G +A ++E++ + + V G D A+V ++ + +
Sbjct: 439 IKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 497
Query: 599 WAASE 603
+ AS+
Sbjct: 498 YVASQ 502
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 222 bits (565), Expect = 1e-65
Identities = 109/535 (20%), Positives = 177/535 (33%), Gaps = 83/535 (15%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
D RA F + + GE TY E + GL G+ G
Sbjct: 12 NLWDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ N L A + L P + YI+NHA + + P L +
Sbjct: 67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126
Query: 200 LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
+ E+ TV+ VV+ + +
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPEGYLAYE--------------EALGEEADPVRVPERAAC 172
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYERANQVM 317
+ YT+GTTG PKG V SH L+ A+ GT DV + +P+ H+
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232
Query: 318 TVYSGVAVGFY--QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375
G + D L++ T VP ++ +
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL------------------ 274
Query: 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF 435
+ + +R + G S ++ +
Sbjct: 275 ------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFE-RM 309
Query: 436 GGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
G V +GYG+TETS ++ Q +E L G P +++ D E
Sbjct: 310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 368
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544
+D GE+ ++GP I GYY +E T+ + DG+F TGDI +W G ++I DR
Sbjct: 369 VPKDGKAL-GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 427
Query: 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDAL 596
K++ K GE+I++ +EN V + V + +A+V +
Sbjct: 428 KDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP 481
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 205 bits (521), Expect = 2e-58
Identities = 94/534 (17%), Positives = 177/534 (33%), Gaps = 77/534 (14%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ +TY E +V L Y G+ KG + +Y PE +I A S I
Sbjct: 86 GQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSV 145
Query: 168 LYDTLGPDAVKYIVNHASVQAVFC---------VPQTLNSLLSCLSEVPTVRLIVVIGGI 218
++ ++++ +N + V V +T + L E P VR ++V
Sbjct: 146 VFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT 205
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
++ + + P +P +D + YTSG+TG PKG S
Sbjct: 206 NNPSVAFH----APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHST 261
Query: 279 -GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-----D 331
G L+ ++ + DV+ + + I V + G A ++G +
Sbjct: 262 AGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN 321
Query: 332 NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391
+ D + + T F P L A + + L
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRL------------------LKRAGDSYIENHSLK-- 361
Query: 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR---VTEGYGMTET 448
+R +GS P++ +V ++ G + + Y TE+
Sbjct: 362 --------------------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 401
Query: 449 SCLISQLDEGDNL---SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLI 503
+ G G P + ++D + G + V+ P
Sbjct: 402 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSF 459
Query: 504 FKGYYKDEIQTKEVI--DEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKI 561
+ +K+ + + G++ TGD G + I+ R ++ + G ++ +I
Sbjct: 460 ARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEI 518
Query: 562 ENVYAKCKFVGQCFVYG---DSFNSALVAIVSVDQDALKAWAASEGIQVTFSWL 612
E + V +C V G D A+ A V + + + A + +Q L
Sbjct: 519 EAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHL 572
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 160 bits (404), Expect = 4e-43
Identities = 88/551 (15%), Positives = 168/551 (30%), Gaps = 109/551 (19%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY 132
++P T H F V + V + V E + +TY E ++ I
Sbjct: 17 AEYPRDKTIHQLFEEQVSKRPN------NVAI---VCENEQLTYHELNVKANQLARIFIE 67
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI K + +G+ + I A VP+ + ++YI++ + + +
Sbjct: 68 KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 127
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
++ + I Q+ + + R P
Sbjct: 128 KHLVHLIH-------------------------NIQFNGQVEIFEEDTIKIREGTNLHVP 162
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K D+A + YTSGTTG PKG +L H + D + ++
Sbjct: 163 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV 222
Query: 313 ANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
M + +G ++ D +K + TV P + +++T
Sbjct: 223 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQT- 281
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
+ + S SP ++
Sbjct: 282 -----------------------------------------------LITAGSATSPSLV 294
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSED 488
+ K YG TET+ + GH A + +
Sbjct: 295 N--KWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQI----YIVDENL 348
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLK 539
Q GE+C+ G + +GY+K T + + + TGD W+ G ++
Sbjct: 349 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIE 408
Query: 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV----SVD 592
+ R N K+ G + E++E++ K ++ + V L A +
Sbjct: 409 YLGRIDNQVKIR-GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP 467
Query: 593 QDALKAWAASE 603
+ L+ +++ E
Sbjct: 468 LEQLRQFSSEE 478
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 158 bits (399), Expect = 2e-42
Identities = 88/541 (16%), Positives = 154/541 (28%), Gaps = 88/541 (16%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T ++ RA D+ L +T+ E V + L G+
Sbjct: 3 TVNEMLRRAATRAPDHCALAV-------PARGLRLTHAELRARVEAVAARLHADGLRPQQ 55
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV--PQTLN 197
+ + N + +I A + L L + ++ + A Q +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 198 SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDD 257
++ S + L ++ + PI +P
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPI---------------------EDPQREPAQ 154
Query: 258 VATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317
A I YTSGTTG PK A++ + V + + + + +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
V + G Y D L + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD--------------ALAA 260
Query: 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG 437
AA +A L +R + + + VL+ + G
Sbjct: 261 AAAHAGSSLKLD----------------------SLRHVTFAGATMPDAVLETVHQHLPG 298
Query: 438 RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE-- 495
YG TE + G + +++ D+ GE
Sbjct: 299 EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG-------VDEIVANGEEG 351
Query: 496 --ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
I F GY T E + +DGW+ T D+ +W P G ++I+ R ++ G
Sbjct: 352 ELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIIS-GG 409
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV------SVDQDALKAWAASEG 604
E I +IE V V + V G + ++ A V ++ DAL + S
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 605 I 605
+
Sbjct: 470 L 470
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 152 bits (384), Expect = 2e-40
Identities = 95/540 (17%), Positives = 159/540 (29%), Gaps = 82/540 (15%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T D + D + T G W +Y E T + +G GI +
Sbjct: 26 TFGDLLRDRAAKYGDRIAI--------TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ + N E+ V A + V + + Y A A
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 200 LSCL-----SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK 254
L S++PT++ I+V G ++ +P L + K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DVA + + G+TG K +H + I S+ + S VY++
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAA----------- 229
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
N L V + +
Sbjct: 230 ------------LPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITA 277
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
L A S ++ L G + S + +K
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQ----------------VGGAKFSAEAARRVKAV 321
Query: 435 FGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
FG + + +GM E ++LD+ + + G P + + V + +P
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDR---DVKPGET 378
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQG 553
G + RGP +GYYK E EDG++ TGDI G + + R K+ G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRG-G 437
Query: 554 EYIAAEKIENVYAKCKFVGQCFVYG---DSFNSALVAIV-----SVDQDALKAWAASEGI 605
E +AAE++EN V + + + LKA+ G+
Sbjct: 438 EKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGL 497
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 615 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=5.9e-71 Score=612.73 Aligned_cols=472 Identities=18% Similarity=0.265 Sum_probs=386.2
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
+-...+|.++++.+||++|+++. ....++.+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 72 N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~ 148 (643)
T d1pg4a_ 72 NLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 148 (643)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHH
Confidence 34456777888999999999986 434456788999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---------hHHHHhhhc--cCCCceEEEEECCCCCCCCCCCc
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLS--EVPTVRLIVVIGGIDDQIPSLPI 227 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~--~~~~l~~ii~~~~~~~~~~~~~~ 227 (615)
+++|++++|+++.++++++.+++++++++++|+++.. ...+..... ..+.++.++++.........
T Consensus 149 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~--- 225 (643)
T d1pg4a_ 149 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW--- 225 (643)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC---
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc---
Confidence 9999999999999999999999999999999997642 222222222 35667788887654322111
Q ss_pred CCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHh-hccCcccCCCcEEEEcCCh
Q 007169 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPL 306 (615)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~lPl 306 (615)
.......+.+....... ...+...+++|+++|+|||||||.||||++||++++..... ....+++.++|++++++|+
T Consensus 226 -~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~ 303 (643)
T d1pg4a_ 226 -QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADV 303 (643)
T ss_dssp -CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCT
T ss_pred -ccccchhhhhhhcccCc-ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCCh
Confidence 11122344555443322 23445567899999999999999999999999997655443 3445788999999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q 007169 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (615)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (615)
+|++++.. .+.+|+.|+++++++ .++..+++.++++++|++.++|++++.|++.....
T Consensus 304 ~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~---------------- 367 (643)
T d1pg4a_ 304 GWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------------- 367 (643)
T ss_dssp TSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------------
T ss_pred HHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh----------------
Confidence 99999876 456899999999986 37899999999999999999999999886521100
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---CccccccccccccccccccCC
Q 007169 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLDE 457 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~ 457 (615)
.+....++||.+++||+|+++++.+++.+.++ +++++.||+||+++.++...+
T Consensus 368 ------------------------~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~ 423 (643)
T d1pg4a_ 368 ------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLP 423 (643)
T ss_dssp ------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCT
T ss_pred ------------------------ccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCC
Confidence 01111258999999999999999999999884 779999999999877665544
Q ss_pred CC--CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec--CcccccccCChhhhhhcc--CCCCeeecccEEE
Q 007169 458 GD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDIGM 531 (615)
Q Consensus 458 ~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDlg~ 531 (615)
.. .+.+++|+|++|++++|+| ++++.++.++ .|||+|+| |+++.|||++++.+.+.+ ..+|||+|||+|+
T Consensus 424 ~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~---~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~ 499 (643)
T d1pg4a_ 424 GAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGAR 499 (643)
T ss_dssp TTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEE
T ss_pred CccCCCCCccccccCCCEEEEEC-CCCCCCCCCc---eEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEE
Confidence 33 5678999999999999999 5667777776 89999999 578999999999888765 3589999999999
Q ss_pred EecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHH
Q 007169 532 WIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAW 599 (615)
Q Consensus 532 ~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~ 599 (615)
+|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.||+|+|.+++ +.++|+|++++ .+++++
T Consensus 500 ~d~dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~ 578 (643)
T d1pg4a_ 500 RDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNW 578 (643)
T ss_dssp ECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred ECCCceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 8999999999999999999999999997654 58999999753 267888
Q ss_pred HHHc
Q 007169 600 AASE 603 (615)
Q Consensus 600 ~~~~ 603 (615)
++++
T Consensus 579 ~~~~ 582 (643)
T d1pg4a_ 579 VRKE 582 (643)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8875
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-69 Score=604.60 Aligned_cols=467 Identities=18% Similarity=0.238 Sum_probs=376.5
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
..+..+.+|+++++++||++|+++. ..+.+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++||++++
T Consensus 57 ~lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~ 133 (640)
T d1ry2a_ 57 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 133 (640)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred chhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 3455688899999999999999986 444456688999999999999999997 679999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccc---------hHHHHhhhccCCCceEEEEECCCCCCCCCCC
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~ 226 (615)
|||+++|++++|+++.++++++.++++++++++++++... ...+.+.......+.....+..........
T Consensus 134 lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 212 (640)
T d1ry2a_ 134 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF- 212 (640)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-
T ss_pred HHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccc-
Confidence 9999999999999999999999999999999999998643 233444444555666666554432211111
Q ss_pred cCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc-cCcccCCCcEEEEcCC
Q 007169 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLP 305 (615)
Q Consensus 227 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lP 305 (615)
.......+....... .......+..++|+++|+|||||||.||||+++|++++....... ..+.+.++|++++++|
T Consensus 213 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~p 289 (640)
T d1ry2a_ 213 --HAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGD 289 (640)
T ss_dssp --CSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSC
T ss_pred --ccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccc
Confidence 111122333333222 223344556789999999999999999999999999877655443 3467889999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHH
Q 007169 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (615)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (615)
++|+++... .+.+++.|+++++++ .++..+++.|+++++|++.++|++++.|.+....
T Consensus 290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------- 353 (640)
T d1ry2a_ 290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS---------------- 353 (640)
T ss_dssp TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT----------------
T ss_pred hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccc----------------
Confidence 999999875 556899999998876 3789999999999999999999999877541000
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---CccccccccccccccccccC
Q 007169 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLD 456 (615)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~ 456 (615)
...+...++||.+++||+++++++.+++++.+| +.++++||+||++...+...
T Consensus 354 ------------------------~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~ 409 (640)
T d1ry2a_ 354 ------------------------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 409 (640)
T ss_dssp ------------------------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred ------------------------ccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccccccccc
Confidence 000111258999999999999999999999886 46899999999987666544
Q ss_pred CCC---CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec--CcccccccCChhhhhhcc--CCCCeeecccE
Q 007169 457 EGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDI 529 (615)
Q Consensus 457 ~~~---~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~--~~~gw~~TGDl 529 (615)
... .+.+++|.|+++++++|+|.+++....... ..|||+++| |+++.|||+|++.|.+.| +.+|||+|||+
T Consensus 410 ~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~--~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDl 487 (640)
T d1ry2a_ 410 AGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 487 (640)
T ss_dssp TTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEE
T ss_pred CCCcCCCCCcccccccCCceEEEEeCCCCcccCCCC--ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCc
Confidence 332 567899999999999999965554433333 379999998 689999999999999887 45699999999
Q ss_pred EEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH
Q 007169 530 GMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ 593 (615)
Q Consensus 530 g~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~ 593 (615)
|++|+||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.||+|+|.+++ +.++|+|++.+
T Consensus 488 g~~d~dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~ 553 (640)
T d1ry2a_ 488 AAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKN 553 (640)
T ss_dssp EEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-
T ss_pred eeECCCCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcC
Confidence 999999999999999999996 8999999999999999999999999997754 57999999865
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.1e-69 Score=590.38 Aligned_cols=452 Identities=25% Similarity=0.319 Sum_probs=371.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
+..||+++|+++++++||++|+++. + .++.+++||+||++++.++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus 9 ~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 83 (534)
T d1v25a_ 9 EELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 83 (534)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence 3458999999999999999999876 2 3456789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.++|+++++++++++.............++.++.++......... ....
T Consensus 84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 153 (534)
T d1v25a_ 84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEG----------YLAY 153 (534)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTT----------CEEH
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccc----------cccc
Confidence 999999999999999999999999999999999999999988888888888887777655432110 1111
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc--cCcccCCCcEEEEcCChHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~--~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
... . ....+.....++++++|+|||||||.||||+++|.+++....... ..+.+..+|++++.+|++|.+++..
T Consensus 154 ~~~-~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~ 229 (534)
T d1v25a_ 154 EEA-L---GEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 229 (534)
T ss_dssp HHH-C---CSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH
T ss_pred ccc-c---cccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccc
Confidence 111 1 112234456788999999999999999999999999987665443 3356788999999999999999998
Q ss_pred HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
.+..+..|++.++.. .++..+...+.++++|++.++|.++..+.+.....
T Consensus 230 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~---------------------------- 281 (534)
T d1v25a_ 230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST---------------------------- 281 (534)
T ss_dssp HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH----------------------------
T ss_pred cceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccc----------------------------
Confidence 888888888887765 79999999999999999999999999887642211
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NL 461 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~ 461 (615)
....++||.+++||++++++..+++++ ++.+++++||+||++..++...... ..
T Consensus 282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (534)
T d1v25a_ 282 --------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 346 (534)
T ss_dssp --------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHH
T ss_pred --------------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccc
Confidence 112268999999999999999999986 5899999999999998776554332 12
Q ss_pred CCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEE
Q 007169 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 462 ~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (615)
.+++|+|++|++++|+| ++++.++.+.. +.|||+|+|++++.|||++++.|++.|..||||+|||+|++|+||+|+++
T Consensus 347 ~~~~G~p~~g~~~~i~d-~~~~~~~~~~~-~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~ 424 (534)
T d1v25a_ 347 KAKTGLPIPLVRLRVAD-EEGRPVPKDGK-ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK 424 (534)
T ss_dssp HTSCBEECTTCEEEEEC-TTSCBCCSSSC-CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred cccceeccCCcEEEEEC-CCCCCCCCCCC-eeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEe
Confidence 47899999999999999 55666555321 38999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ 593 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~ 593 (615)
||+||+||+ +|++|+|.+||++|.+||+|.||+|+|.+++ +.++|+|+++.
T Consensus 425 GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~ 478 (534)
T d1v25a_ 425 DRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG 478 (534)
T ss_dssp EESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----
T ss_pred cccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCC
Confidence 999999996 8999999999999999999999999997654 47899998753
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=6.7e-69 Score=587.00 Aligned_cols=469 Identities=22% Similarity=0.322 Sum_probs=385.6
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..|+.++|.+++++|+++|+.+.. .++. ..+.+||+||++++.++|++|.++|+++||+|+|+++|+++|+++++|
T Consensus 16 ~~t~~~~l~~~~~~~~~~P~~~a~--~d~~--~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA 91 (541)
T d1lcia_ 16 DGTAGEQLHKAMKRYALVPGTIAF--TDAH--IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 91 (541)
T ss_dssp SSCHHHHHHHHHHHHHTSTTCEEE--EETT--TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCeEEE--EeCC--CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 368999999999999665544322 1222 124699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.++|++++++++|++.+..+.+.++...++.++.+++++...+. ..+..+.
T Consensus 92 ~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 162 (541)
T d1lcia_ 92 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSMY 162 (541)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBEEHH
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc---------cccchhh
Confidence 9999999999999999999999999999999999999999999988889999988887653321 1123333
Q ss_pred HHHhcCc------cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---cccCCCcEEEEcCChHH
Q 007169 238 NLLSQGR------SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAH 308 (615)
Q Consensus 238 ~l~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h 308 (615)
+...... ....+.....++++++|+|||||||.||||++||++++......... ..+.+++++++++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 242 (541)
T d1lcia_ 163 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242 (541)
T ss_dssp HHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred hhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccc
Confidence 3322111 11122334567899999999999999999999999998876655443 45778999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
.++....+..+..|+...... .+.......+..+++|.+..+|.++..+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~------------------------- 297 (541)
T d1lcia_ 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------- 297 (541)
T ss_dssp HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC-------------------------
T ss_pred cccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccc-------------------------
Confidence 999988888888888877766 788999999999999999999999988865210
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCC-ccccccccccccccccccCCCCCCCCCcC
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (615)
.......++|.+++||++++++..+++.+.++. .++++||+||+++.++.....+...+++|
T Consensus 298 -----------------~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG 360 (541)
T d1lcia_ 298 -----------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVG 360 (541)
T ss_dssp -----------------GGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCB
T ss_pred -----------------ccccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccc
Confidence 011112589999999999999999999998865 68999999999988888877778889999
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
+|+|+++++|+|++++..++.|+ .|||+|+|++++.||+++++.+...+..+|||+|||+|++|+||.++++||+||
T Consensus 361 ~p~~~~~~~i~d~d~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d 437 (541)
T d1lcia_ 361 KVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 437 (541)
T ss_dssp EECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----
T ss_pred cccCCCEEEEEECCCCcCCCCCC---eEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecC
Confidence 99999999999988888888887 899999999999999999999999998899999999999999999999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCC
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGI 605 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~~ 605 (615)
+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.++++++..
T Consensus 438 ~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~ 504 (541)
T d1lcia_ 438 LIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVT 504 (541)
T ss_dssp CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHSC
T ss_pred EEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHhCC
Confidence 9997 8999999999999999999999999996543 4788999864 4789999988654
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=3.4e-65 Score=554.10 Aligned_cols=441 Identities=19% Similarity=0.270 Sum_probs=369.6
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH
Q 007169 74 DHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI 153 (615)
Q Consensus 74 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~ 153 (615)
+.|...||.++|+++|+++||++|+++. + +.+||+||.++++++|.+|+++|+++||+|+|+++|+++|++
T Consensus 18 ~~~~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~ 88 (514)
T d1amua_ 18 EYPRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFI 88 (514)
T ss_dssp CCCTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCCCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHH
Confidence 3467899999999999999999999863 2 469999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+++||+++|++++|+++.++.+++.+++++++++++|++....+.+..... ... .......
T Consensus 89 ~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~-~~~~~~~--------------- 149 (514)
T d1amua_ 89 GILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---NGQ-VEIFEED--------------- 149 (514)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC---CSE-EEECCCS---------------
T ss_pred HHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcc---ccc-ccccccc---------------
Confidence 999999999999999999999999999999999999999887766543321 111 1111110
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
............+..++++++|+|||||||.||+|++||+++...+...........+|++++.+|++|.+++.
T Consensus 150 ------~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 223 (514)
T d1amua_ 150 ------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW 223 (514)
T ss_dssp ------TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH
T ss_pred ------cccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccc
Confidence 00111112233456789999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 314 ~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
..+.++..|+++++.. .+....++.+....++.+..+|.......
T Consensus 224 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 272 (514)
T d1amua_ 224 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD------------------------------- 272 (514)
T ss_dssp HHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC-------------------------------
T ss_pred cccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc-------------------------------
Confidence 8888999999998875 57788888999999999999986543211
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CCCCCcC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVG 466 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG 466 (615)
.....+++.+++||+++++++.+++.. ++.+++.||+||++.+++...... ...++.|
T Consensus 273 -----------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
T d1amua_ 273 -----------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIG 333 (514)
T ss_dssp -----------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCB
T ss_pred -----------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCcccccc
Confidence 011258999999999999999987765 678999999999998776554443 3456788
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc------CCCCeeecccEEEEecCCcEEE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~------~~~gw~~TGDlg~~~~dG~l~i 540 (615)
.+.++.++++.| ++++.++.|+ .|||+|+|+++++|||++++.+.+.| +.+|||+|||+|++|+||+|+|
T Consensus 334 ~~~~~~~v~~~d-~~~~~~~~g~---~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i 409 (514)
T d1amua_ 334 APIQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEY 409 (514)
T ss_dssp EECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEE
T ss_pred cceeeeeEeeec-ccceecCCCC---eeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEE
Confidence 999999999999 7777888887 89999999999999999999999887 4578999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----HHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----DALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|++||++|.+||+|.||+|+|.+++ +.++|+|++++ ++++++++++
T Consensus 410 ~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~~~~l~~~~~~~ 478 (514)
T d1amua_ 410 LGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEE 478 (514)
T ss_dssp EEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCCHHHHHHHHHhh
Confidence 9999999997 8999999999999999999999999997654 47899999864 6888888764
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.1e-63 Score=544.85 Aligned_cols=457 Identities=21% Similarity=0.263 Sum_probs=378.1
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.|+.++|+++|+++||++|+.+. + +.+||+||+++++++|++|.++|+++||+|+|+++|+++|++++|||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 69999999999999999999764 3 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchH-----HHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceE
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-----SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
+++|++++|+++.++.+++.++|+++++++++++..... .........+.+...+...... ..
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence 999999999999999999999999999999999864332 1111122234443333332211 11
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHH
Q 007169 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
..++++. ......++..++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++.+|++|.+++.
T Consensus 164 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~ 239 (536)
T d1mdba_ 164 LPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS 239 (536)
T ss_dssp EEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccccccccccccccccccccccee
Confidence 2222221 122334456789999999999999999999999999999999888888999999999999999999986
Q ss_pred H-HH-HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcC
Q 007169 314 N-QV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (615)
Q Consensus 314 ~-~~-~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 390 (615)
. .+ ..+..|++++..+ +++..++..+++++++.+..+|..+..+.......
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 293 (536)
T d1mdba_ 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------- 293 (536)
T ss_dssp SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------------
T ss_pred eccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc--------------------------
Confidence 4 33 3455567666665 79999999999999999999999998876632211
Q ss_pred CCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCCC
Q 007169 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPN 469 (615)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~ 469 (615)
....++++.+++||+++++...+++.+.++......||.+|.+......... ....+++|.|+
T Consensus 294 ----------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~ 357 (536)
T d1mdba_ 294 ----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM 357 (536)
T ss_dssp ----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEES
T ss_pred ----------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCC
Confidence 1112589999999999999999999999999999999999987655543332 24567899998
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEE
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFK 549 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ik 549 (615)
++....+++.++++.++.++ .|||+++|+.++.||+++++.+...++++|||+|||+|++|+||+|+++||+||+||
T Consensus 358 ~~~~~~~v~~~~g~~~~~~~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~ 434 (536)
T d1mdba_ 358 SPYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQIN 434 (536)
T ss_dssp STTCEEEEECTTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred CCcceEEEEcCCCCeecccc---cceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEE
Confidence 76666666657777777776 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHcCCC
Q 007169 550 LAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASEGIQ 606 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~~~~ 606 (615)
+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++ +++++++++++++++
T Consensus 435 ~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~~l~ 498 (536)
T d1mdba_ 435 R-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLA 498 (536)
T ss_dssp C-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred E-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 6 8999999999999999999999999997643 468999986 457899999988764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=2e-59 Score=505.90 Aligned_cols=453 Identities=19% Similarity=0.218 Sum_probs=366.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
++|++++|+++++++||++|+.+. ++. +++||+||.+++.++|++|+++|+++||+|+|+++|+++|++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 479999999999999999999875 322 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++++++.+++++++++++|++..... ........... .++. +.
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~i~---------------------~~ 130 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGA-RIIF---------------------LG 130 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCC-EEEE---------------------HH
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhcccc-cccc---------------------ch
Confidence 9999999999999999999999999999999999875422 11222122222 2332 23
Q ss_pred HHHhcCcc----CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCc--ccCCCcEEEEcCChHHHHH
Q 007169 238 NLLSQGRS----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 238 ~l~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~--~~~~~d~~l~~lPl~h~~~ 311 (615)
++...+.. ........+++++++++|||||||.||+|+++|+++.+.+......+ .....+++++.+|++|.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (503)
T d3cw9a1 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210 (503)
T ss_dssp HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHH
T ss_pred hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccc
Confidence 33222111 12233456789999999999999999999999999998887766543 4456789999999999888
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
... .+.+...++.+++.+ +++..+...+..++++.+..+|..+..+........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 266 (503)
T d3cw9a1 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG------------------------ 266 (503)
T ss_dssp HHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC------------------------
T ss_pred cccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccc------------------------
Confidence 775 445666677766665 899999999999999999999999887765322111
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (615)
++...++||.+++||+++++++..+++..++..+.+.||+||++..+...........+.+.+.
T Consensus 267 ----------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~ 330 (503)
T d3cw9a1 267 ----------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFS 330 (503)
T ss_dssp ----------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTC
T ss_pred ----------------ccccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 1112358999999999999999999999999999999999999887776665555555555555
Q ss_pred CCeeEEEeecCCCCCCCCCCCCCcceEEEec-CcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeE
Q 007169 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRG-PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIF 548 (615)
Q Consensus 470 ~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg-~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~i 548 (615)
+...+.+.+ ..++.++.|+ .|++++++ +....||+++++.|.+.| .+|||+|||+|++|+||.|+++||+||+|
T Consensus 331 ~~~~~~~~~-~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~i 405 (503)
T d3cw9a1 331 EVRIVRIGG-GVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405 (503)
T ss_dssp CEEEECTTS-CTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCE
T ss_pred cceeeeeec-ccCcccCCCc---cccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeE
Confidence 555444444 5556666676 78777765 456778999999999999 78999999999999999999999999999
Q ss_pred EcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCCC
Q 007169 549 KLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGIQ 606 (615)
Q Consensus 549 kl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~~~ 606 (615)
|+ +|++|+|.+||++|.+||+|.||+|+|.+++ +.++|+|+++ ++++.++++++.++
T Consensus 406 k~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~ 471 (503)
T d3cw9a1 406 IS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELA 471 (503)
T ss_dssp EE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSSC
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 97 8999999999999999999999999997654 4799999984 57899999876664
|