Citrus Sinensis ID: 007183
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.858 | 0.736 | 0.442 | 1e-129 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.872 | 0.753 | 0.409 | 1e-113 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.874 | 0.771 | 0.397 | 1e-108 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.869 | 0.756 | 0.398 | 1e-106 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.845 | 0.694 | 0.380 | 1e-101 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.846 | 0.709 | 0.379 | 1e-101 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.833 | 0.714 | 0.369 | 7e-95 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.871 | 0.710 | 0.360 | 7e-94 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.864 | 0.719 | 0.366 | 3e-93 | |
| Q8GWD2 | 649 | Probable cyclic nucleotid | no | no | 0.846 | 0.801 | 0.348 | 9e-90 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/569 (44%), Positives = 345/569 (60%), Gaps = 42/569 (7%)
Query: 51 LVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGL 110
L WNKI V + AVS+DPLFFY+P+++D KKC+ +D K+ +TA+ L
Sbjct: 92 LQRWNKIFV------------LACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVL 139
Query: 111 RSLFDFLYIFYITPQLLADLVAS---VNAKHEANNSLKSLMKFWLGSLFV-DLPAVFPLP 166
RS D Y+ +I Q +A V + + + K +L S F+ D+ AV PLP
Sbjct: 140 RSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLP 199
Query: 167 QLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIA 220
Q+VIL IIP M G L+ +LK+ V Q++ R IRIYP T G L E WA A
Sbjct: 200 QMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGA 259
Query: 221 AFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDC-YDSLGNYEFLN 279
AFNL LY+LASHVFGA WY +IER+T CWK+AC NN C C ++ G FLN
Sbjct: 260 AFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLN 319
Query: 280 EFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNA 339
E CP + NTT+ DFGIF ALQSG+VE DFPQKF +CF WGL+NLS GQNL+TS+
Sbjct: 320 ESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYI 379
Query: 340 WENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQ 399
WE F + ++I+GLVL FLIGN+Q YLQ+ TR +EM ++ ++ + M + L ++++
Sbjct: 380 WEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRK 439
Query: 400 QLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALC 459
+++ Y++Y W++ +D E+ LS LPK+LRR+IKR LCL LL V F+ +DE++LDALC
Sbjct: 440 RIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALC 499
Query: 460 DCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRK 519
D ++P Y + ++IV EGDP+ EMLFI++GK+ T+ G N+
Sbjct: 500 DRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS------------- 546
Query: 520 DHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIEHQVAS 579
++L GDF GEEL+ W L S SN+P+STR+V+AL VEAF L A DLK V + +
Sbjct: 547 EYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLH 606
Query: 580 STEFNSNYSVKD------AARIIQLAWRR 602
S + + AA IQ AWRR
Sbjct: 607 SKQLRHTFRYYSQQWKTWAACFIQAAWRR 635
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8GWD2|CNG12_ARATH Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | ||||||
| 15238657 | 716 | cyclic nucleotide-gated ion channel 1 [A | 0.858 | 0.736 | 0.442 | 1e-127 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.876 | 0.749 | 0.434 | 1e-127 | |
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.858 | 0.736 | 0.439 | 1e-126 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.872 | 0.757 | 0.432 | 1e-125 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.874 | 0.751 | 0.432 | 1e-124 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.872 | 0.755 | 0.433 | 1e-124 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.872 | 0.639 | 0.436 | 1e-124 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.874 | 0.751 | 0.430 | 1e-124 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.863 | 0.747 | 0.429 | 1e-122 | |
| 449456377 | 713 | PREDICTED: cyclic nucleotide-gated ion c | 0.853 | 0.734 | 0.439 | 1e-121 |
| >gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 252/569 (44%), Positives = 345/569 (60%), Gaps = 42/569 (7%)
Query: 51 LVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGL 110
L WNKI V + AVS+DPLFFY+P+++D KKC+ +D K+ +TA+ L
Sbjct: 92 LQRWNKIFV------------LACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVL 139
Query: 111 RSLFDFLYIFYITPQLLADLVAS---VNAKHEANNSLKSLMKFWLGSLFV-DLPAVFPLP 166
RS D Y+ +I Q +A V + + + K +L S F+ D+ AV PLP
Sbjct: 140 RSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLP 199
Query: 167 QLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIA 220
Q+VIL IIP M G L+ +LK+ V Q++ R IRIYP T G L E WA A
Sbjct: 200 QMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGA 259
Query: 221 AFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDC-YDSLGNYEFLN 279
AFNL LY+LASHVFGA WY +IER+T CWK+AC NN C C ++ G FLN
Sbjct: 260 AFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLN 319
Query: 280 EFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNA 339
E CP + NTT+ DFGIF ALQSG+VE DFPQKF +CF WGL+NLS GQNL+TS+
Sbjct: 320 ESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYI 379
Query: 340 WENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQ 399
WE F + ++I+GLVL FLIGN+Q YLQ+ TR +EM ++ ++ + M + L ++++
Sbjct: 380 WEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRK 439
Query: 400 QLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALC 459
+++ Y++Y W++ +D E+ LS LPK+LRR+IKR LCL LL V F+ +DE++LDALC
Sbjct: 440 RIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALC 499
Query: 460 DCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRK 519
D ++P Y + ++IV EGDP+ EMLFI++GK+ T+ G N+
Sbjct: 500 DRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS------------- 546
Query: 520 DHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIEHQVAS 579
++L GDF GEEL+ W L S SN+P+STR+V+AL VEAF L A DLK V + +
Sbjct: 547 EYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLH 606
Query: 580 STEFNSNYSVKD------AARIIQLAWRR 602
S + + AA IQ AWRR
Sbjct: 607 SKQLRHTFRYYSQQWKTWAACFIQAAWRR 635
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.907 | 0.777 | 0.437 | 5.4e-118 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.871 | 0.768 | 0.399 | 3.1e-99 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.866 | 0.753 | 0.407 | 2.8e-98 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.864 | 0.719 | 0.370 | 1.4e-85 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.842 | 0.762 | 0.384 | 7.2e-84 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.869 | 0.859 | 0.360 | 1.3e-82 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.719 | 0.591 | 0.393 | 2e-81 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.732 | 0.613 | 0.381 | 6.8e-79 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.819 | 0.692 | 0.369 | 1.8e-78 | |
| TAIR|locus:2039114 | 649 | CNGC12 "cyclic nucleotide-gate | 0.869 | 0.822 | 0.348 | 2.1e-77 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 259/592 (43%), Positives = 363/592 (61%)
Query: 42 SDKNCLLKALVNWNKIIVHLQG---NSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIR 98
S K + K + + +KI+ QG + I + + AVS+DPLFFY+P+++D KKC+
Sbjct: 69 SFKEAVSKGIGSTHKIL-DPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLG 127
Query: 99 LDYKLAVTATGLRSLFDFLYIFYITPQLLADLVAS---VNAKHEANNSLKSLMKFWLGSL 155
+D K+ +TA+ LRS D Y+ +I Q +A V + + + K +L S
Sbjct: 128 IDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSH 187
Query: 156 FV-DLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------T 208
F+ D+ AV PLPQ+VIL IIP M G L+ +LK+ V Q++ R IRIYP T
Sbjct: 188 FIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRT 247
Query: 209 LGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDC 268
G L E WA AAFNL LY+LASHVFGA WY +IER+T CWK+AC NN C C
Sbjct: 248 SGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYC 307
Query: 269 Y-DSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLS 327
++ G FLNE CP + NTT+ DFGIF ALQSG+VE DFPQKF +CF WGL+NLS
Sbjct: 308 DPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLS 367
Query: 328 CFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEH 387
GQNL+TS+ WE F + ++I+GLVL FLIGN+Q YLQ+ TR +EM ++ ++ +
Sbjct: 368 SLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQW 427
Query: 388 MPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEF 447
M + L +++++++ Y++Y W++ +D E+ LS LPK+LRR+IKR LCL LL V F
Sbjct: 428 MSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMF 487
Query: 448 KTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTS 507
+ +DE++LDALCD ++P Y + ++IV EGDP+ EMLFI++GK+ T TNG
Sbjct: 488 EKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT----TNGG---- 539
Query: 508 HSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHD 567
+ F++ ++L GDF GEEL+ W L S SN+P+STR+V+AL VEAF L A D
Sbjct: 540 ----RTGFLN-SEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADD 594
Query: 568 LKHVFIEHQVASSTEFNSNYSVKD------AARIIQLAWRRRYSSRNLLKSV 613
LK V + + S + + AA IQ AWRR Y + L +S+
Sbjct: 595 LKFVASQFRRLHSKQLRHTFRYYSQQWKTWAACFIQAAWRR-YIKKKLEESL 645
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039114 CNGC12 "cyclic nucleotide-gated channel 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 614 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 1e-07 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 9e-04 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 447 FKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANT 506
F LD+E L+ L D ++ + I+ +GDP + ++ G + +Y E
Sbjct: 2 FSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDE-------- 53
Query: 507 SHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAH 566
D + I L GD +GE + L N P S +V+AL + E L
Sbjct: 54 ----DGREQIVG--FLGPGDLFGELAL--------LGNGPRSA-TVRALTDSELLVLPRS 98
Query: 567 DLKHVFIEH 575
D + + E+
Sbjct: 99 DFRRLLQEY 107
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In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.5 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.34 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.33 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.31 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.3 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.27 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.24 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.23 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.23 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.22 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.16 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.15 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.11 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.09 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.08 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.06 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.04 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.9 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 98.85 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 98.82 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.82 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.79 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 98.73 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.34 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.21 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.9 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.77 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.58 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.31 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.8 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 96.58 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.49 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 96.39 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.35 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.26 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 95.79 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 95.37 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 94.69 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 93.59 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 90.53 | |
| PF00612 | 21 | IQ: IQ calmodulin-binding motif; InterPro: IPR0000 | 89.36 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 87.19 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 85.65 | |
| smart00015 | 26 | IQ Short calmodulin-binding motif containing conse | 82.25 | |
| PF08006 | 181 | DUF1700: Protein of unknown function (DUF1700); In | 80.01 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-96 Score=805.74 Aligned_cols=497 Identities=34% Similarity=0.551 Sum_probs=437.0
Q ss_pred ccccccccccchhHHhhcceEEEEecCCCCcchhhHHHHHHHHhhheeeeeEEEeCCceEEEecccccchhhhHHHHHHH
Q 007183 37 KLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDF 116 (614)
Q Consensus 37 k~~~~~~i~P~s~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~v~pl~~y~~~~~~~~~~f~~~~~~~~~~~~~~~~~d~ 116 (614)
+.+...+++|.|+|++.||.++++ +|+++++++|+++|++.....+.| .|..+...+.+++.++|+
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll------------~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~ 128 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLL------------LVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDI 128 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHH------------HHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHH
Confidence 455567999999999999999999 999999999999999999888888 777788899999999999
Q ss_pred HHHHhhhhhceeeEeecccCCc-eeecCHHHHHHHHHhhhc-ccccccccHhHHHHHHhcC------Cc-cchhHHHHhh
Q 007183 117 LYIFYITPQLLADLVASVNAKH-EANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIP------RM-SGLKILSGMM 187 (614)
Q Consensus 117 ~f~~DI~l~F~t~y~~~~~~~g-~~V~d~~~Ia~~Ylk~~F-~Dlls~lP~~~l~~~~~~~------~~-~~~~~l~~~r 187 (614)
+|++||+++|+|||.++ ++ ++|.||++||+||+++|| +|++|++|+++++.+..+. .. ....++.+.|
T Consensus 129 fflvdIvL~Frtayv~~---~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~r 205 (727)
T KOG0498|consen 129 FFLVDIVLNFRTAYVDP---SSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQR 205 (727)
T ss_pred HHHHHHHHhheEEEECC---CCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHH
Confidence 99999999999999997 55 599999999999999999 9999999999998876531 00 1223455666
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCCcccc
Q 007183 188 LLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFD 267 (614)
Q Consensus 188 llrl~rl~~~l~rl~r~~~l~~~~~~~~~~~~~~~~Li~~~l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~~c~~~~l~ 267 (614)
|+|+.|+.+++.|+.+. .++..+++|+..+.+|+++++++||+||+||++|.++...||.++
T Consensus 206 L~Rl~Rv~~l~~r~~k~----~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-------------- 267 (727)
T KOG0498|consen 206 LPRLRRVIPLFARLEKD----TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-------------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHH----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--------------
Confidence 66666666666666554 456778899997788889999999999999999999887777532
Q ss_pred cCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHH
Q 007183 268 CYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVIL 347 (614)
Q Consensus 268 ~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~ 347 (614)
+|+...+..-++.+..++||+ .+++.+|++|+||+++||||+|||+++|+|..|++|+|+
T Consensus 268 --------tw~~~l~~~~~~~~~~~~fg~------------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~ 327 (727)
T KOG0498|consen 268 --------TWLGSLGRLLSCYNLSFTFGI------------YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIF 327 (727)
T ss_pred --------ccccccccccccCcccccccc------------hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHH
Confidence 455432100011233456763 467789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChH
Q 007183 348 VTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKE 427 (614)
Q Consensus 348 ~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~ 427 (614)
+|++|.++||++||||++++++++.+.++|+.++.++++||++++||++||+||++|++|+|..++|+||+++|++||+.
T Consensus 328 ~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~ 407 (727)
T KOG0498|consen 328 IMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKD 407 (727)
T ss_pred HHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccc
Q 007183 428 LRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTS 507 (614)
Q Consensus 428 Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~ 507 (614)
||++|..|+|.++++++|+|+++|++++.+|+.++++..|+|||+|++|||+.++||||.+|.+++.. .+|+.
T Consensus 408 LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~----~~~g~--- 480 (727)
T KOG0498|consen 408 LRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT----TDGGG--- 480 (727)
T ss_pred HHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE----ccCCc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 45442
Q ss_pred cccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh------HHHHhHh
Q 007183 508 HSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE------HQVASST 581 (614)
Q Consensus 508 ~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~------~~l~~~~ 581 (614)
++| ...+++||+|||.-++++++. |+++||+|+|.|+++.|+++||..++++ ..+++.+
T Consensus 481 --~~~------~~~L~~Gd~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~ 545 (727)
T KOG0498|consen 481 --FFV------VAILGPGDFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTF 545 (727)
T ss_pred --eEE------EEEecCCCccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHH
Confidence 334 899999999997666666631 3588999999999999999999999999 7788889
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHhhhhhh
Q 007183 582 EFNSNYSVKDAARIIQLAWRRRYSSRNLLK 611 (614)
Q Consensus 582 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (614)
++++++||+|+|+.||+||| ||++|+..+
T Consensus 546 r~~s~~~r~~aa~~iq~a~r-~~~~~~~~~ 574 (727)
T KOG0498|consen 546 RYYSHLWRTWAACFIQAAWR-RHIKRKGEE 574 (727)
T ss_pred HHhhhhhhhhhhhhHHHHHH-HHHHhhccc
Confidence 99999999999999999999 999988654
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues | Back alignment and domain information |
|---|
| >PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 614 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 2e-22 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-36
Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 28/201 (13%)
Query: 375 KEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKR 434
++ +++++ E+M +KL ++ ++ Y Y +R D + + +R+++
Sbjct: 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVAN 66
Query: 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIY 494
C DL+ +V F D + + ++ + +++ EG M FI QG + I
Sbjct: 67 YNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDII 126
Query: 495 TSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQA 554
D L+DG ++GE + R SV+
Sbjct: 127 M--------------SDGVIAT----SLSDGSYFGEICLLTRER---------RVASVKC 159
Query: 555 LKNVEAFGLMAHDLKHVFIEH 575
F L V E
Sbjct: 160 ETYCTLFSLSVQHFNQVLDEF 180
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.98 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.97 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.97 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.97 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.87 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.77 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.7 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.7 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.62 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.62 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.62 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.62 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.61 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.6 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.59 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.58 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.58 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.58 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.57 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.55 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.54 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.53 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.53 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.52 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.52 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.51 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.5 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.49 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.48 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.48 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.48 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.47 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.47 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.45 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.44 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.43 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.43 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.42 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.41 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.41 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.4 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.38 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.37 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.37 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.36 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.35 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.35 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.33 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.33 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.32 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.31 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.31 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.28 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.27 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.23 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.23 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.2 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.19 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.19 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.16 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.11 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.1 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.98 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.97 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 98.96 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.93 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.91 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 98.79 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.76 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.62 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.61 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.59 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.52 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.46 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.43 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.35 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 97.46 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 95.92 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 95.47 | |
| 2l53_B | 31 | CAM, voltage-gated sodium channel type V alpha iso | 95.15 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 94.84 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.8e-34 Score=299.39 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=56.4
Q ss_pred hhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcC
Q 007183 312 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQ 391 (614)
Q Consensus 312 ~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~ 391 (614)
+..|..|+||+++|||||||||++|.|..|+++++++|++|++++++.+|.+++.+.+.. ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~------~~------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV------RR------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------
Confidence 456889999999999999999999999999999999999999999999999988775411 10
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCc
Q 007183 392 KLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHT 471 (614)
Q Consensus 392 ~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge 471 (614)
+++. .+.+.++++++|++++++.+++++..++++.|+|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0010 024678889999999999999999999999999999
Q ss_pred EEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccce
Q 007183 472 HIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRS 551 (614)
Q Consensus 472 ~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~t 551 (614)
.|+++||.++++|||.+|.|+++. .+ + ..+++|++|||.+++.+ .+++++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~----~~--~---------------~~l~~G~~fGe~~~l~~---------~~~~~~ 310 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVAT----PN--P---------------VELGPGAFFGEMALISG---------EPRSAT 310 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEE----CC--e---------------eEECCCCEEeehHHhCC---------CCcceE
Confidence 999999999999999999999988 22 1 36889999999987631 257889
Q ss_pred EEEcceEEEEEeCHhhHHHHhhh-HHHHhHhhh
Q 007183 552 VQALKNVEAFGLMAHDLKHVFIE-HQVASSTEF 583 (614)
Q Consensus 552 v~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r~ 583 (614)
++|.++|+++.+++++|.+++++ |++.+.+..
T Consensus 311 ~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~ 343 (355)
T 3beh_A 311 VSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 343 (355)
T ss_dssp ---------------------------------
T ss_pred EEECccEEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence 99999999999999999999999 888877653
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 614 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 3e-13 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 3e-08 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 7e-08 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 7e-07 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 2e-05 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 2e-05 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 7e-05 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 2e-04 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 2e-04 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 0.002 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 0.003 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 65.0 bits (157), Expect = 3e-13
Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 13/133 (9%)
Query: 439 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKE 498
++ V F+ +DE +LDA+C+ +KP + + +++V EGDP+ EMLFI++G++ T+
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTD- 64
Query: 499 RTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNV 558
+ L +GDF G+EL+ W L +S SN+P STR+V+AL V
Sbjct: 65 ------------GGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEV 112
Query: 559 EAFGLMAHDLKHV 571
EAF L+A +LK V
Sbjct: 113 EAFALIADELKFV 125
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.97 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.8 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.71 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.71 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.69 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.69 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.68 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.67 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.66 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.6 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.54 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.48 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.46 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.42 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.41 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.41 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.41 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.32 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.3 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.2 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.95 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 96.56 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 96.06 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 87.21 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 80.8 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=7.3e-31 Score=250.51 Aligned_cols=183 Identities=22% Similarity=0.305 Sum_probs=169.2
Q ss_pred cccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhccCcccccc
Q 007183 371 ATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTL 450 (614)
Q Consensus 371 ~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~ 450 (614)
|+++++|+++|+.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||++||.++..+++.++++++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 45678999999999999999999999999999999999975 77899999999999999999999999999999999999
Q ss_pred cHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 451 DEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 451 s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
++.++.+|+..+++..|.|||+|+++||.+++||||.+|.|++.. +++. ...+++|++|||
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~-----~~~~--------------~~~l~~G~~fGe 140 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-----KGNK--------------EMKLSDGSYFGE 140 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC------CCC--------------EEEECTTCEECH
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec-----CCcc--------------eeeeccceeeee
Confidence 999999999999999999999999999999999999999999987 3333 568999999999
Q ss_pred hhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 531 ELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 531 ~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
.+++.+ .+++++++|.++|+++.|++++|.+++++ |++.+.+.
T Consensus 141 ~~~~~~---------~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 184 (193)
T d1q3ea_ 141 ICLLTR---------GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 184 (193)
T ss_dssp HHHHHC---------SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred eeccCC---------CcccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 998742 15889999999999999999999999999 98887776
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
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| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
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| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
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| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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