Citrus Sinensis ID: 007185

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
ccccEEEEEEEccEEEEEEEEccccccccccHHHHHHHHHHHcccccccccEEEEEcccccEEEEccccHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEEEEcccccccccccEEEEEccccccccccEEEcccccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEEcccccccccHHccccccccccccccc
ccccEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEEEcccccEEEEcccHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEcccccEEEEccEEEEEccccccHHHHHcccccccccEEEEcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEcccccEEEEEEEEEcccccccccccEEEEEEcccccccccEEEEEcccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccc
MESTMVIKVKYGDTLRRFnarvdenekldldIDGLRAKIKSLfnfphdsdltltyvdedgdivtlvddddlCDVMRQRLKFLRIDVhlnndkfgkayarssgsstplrspriqhplpdidsKISEILKSVPEPLREAISKLSTDVaskaastspmIADLVGCFskmglshvnvvpqsqygaessgkaeASENLMAhsvsndpnvskddglrevlpktnlkevfpktslkevlpkttavdstsksskdvdigIAARGVGVLLSSvdlnlppvdsapsgstmsiappasnitagddrmdanensvhqttsvpmstssvdpmwpsdvnqprtadlggnlstncpfsgipvanesagssrhprrghfkrgfnrDALMGMFhkgvrcdgcgvhpitgprfkskvkddydLCSICFAAmgseadyiridrpvhyrhprpfrglydhrqnfwlgtpgpdtqhvgalgaphilrdrgikpgrsrldscfildvnvldgtmmapstpftkIWRMRntgnlawprgsqlvwiggdkfsdgvsveievpadgvpvegeidiavdftapelpgryisywrmsspsgvkfgQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
mestmvikvkygdtlrrfnarvdenekldldIDGLRAKIKSLfnfphdsdltltyvdedGDIVTLVDDDDLCDVMRQRLKFlridvhlnndkfgkayarssgsstplrspriqhplpdidsKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSvsndpnvskddglrevlpktnlkevfpktslkevlpkttavdstsksskdvdiGIAARGVGVLLSSVDLNLPPVDsapsgstmsiapPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVAnesagssrhprrgHFKRGFNRDALMGMFHKGVRCDGCGVHPITgprfkskvkdDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVdedgdivtlvddddlcdvMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPkttavdstsksskdvdIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
*****VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGK***********************************************************MIADLVGCFSKMGLSHVNVV*************************************************************************VDIGIAARGVGVLLSSVDL**************************************************************************************************RGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASY****
*ESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI**************************************************************************************************************************************************************************************************************************************SVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVL**************************
MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAY***********SPRIQHPLPDIDSKISEILKSVPEPLREAISKL**********TSPMIADLVGCFSKMGLSHVNVVPQ*************SENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVL**************DVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANE****************DPMWPSDVNQPRTADLGGNLSTNCPFSGIPVA**********RRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
**STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNN**********************QHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGL**************************************************************************************************************************************************SVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRH***********RDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPF***********************************IKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRA************************
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MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVLPKTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSSVDPMWPSDVNQPRTADLGGNLSTNCPFSGIPVANESAGSSRHPRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVASYKIPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query614 2.2.26 [Sep-21-2011]
Q5BL31283 Uncharacterized protein C yes no 0.206 0.448 0.323 2e-14
Q5RC94 894 Next to BRCA1 gene 1 prot yes no 0.299 0.205 0.285 3e-14
Q5F3N9291 Uncharacterized protein C no no 0.167 0.353 0.355 9e-13
Q14596 966 Next to BRCA1 gene 1 prot yes no 0.172 0.109 0.380 9e-13
P97432 988 Next to BRCA1 gene 1 prot yes no 0.172 0.107 0.380 1e-12
Q501R9 983 Next to BRCA1 gene 1 prot yes no 0.172 0.107 0.380 3e-12
Q9H6K1298 Uncharacterized protein C no no 0.167 0.345 0.327 5e-12
Q3TT38291 Uncharacterized protein C no no 0.167 0.353 0.327 5e-12
Q9P792397 ZZ-type zinc finger-conta yes no 0.293 0.453 0.252 9e-12
O95714 4834 E3 ubiquitin-protein liga no no 0.110 0.014 0.357 8e-07
>sp|Q5BL31|CF106_DANRE Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1 Back     alignment and function desciption
 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 12/139 (8%)

Query: 481 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPAD 540
           F+ DV + +G  + P TPFTK WR++NTG  +WP G  L ++GGD+F   V++ +    D
Sbjct: 77  FVEDVTIGEGESVPPDTPFTKTWRIQNTGTESWPPGVCLKYVGGDQFGH-VNMVMVRSLD 135

Query: 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWV--------LIQVLRALE 592
              +    D++V   +P +PG Y   WRM + +G+ +G  +WV        L+ V + L 
Sbjct: 136 PQEIS---DVSVQMRSPAVPGMYQGQWRMCTATGLFYGDVIWVILSVEEGGLLGVTQQLS 192

Query: 593 SIAISFEAYAFDNLVASYK 611
           S    F      +L   Y 
Sbjct: 193 SFKTEFNTQPHRSLEGDYN 211

Danio rerio (taxid: 7955)
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1 Back     alignment and function description
>sp|Q5F3N9|CF106_CHICK Uncharacterized protein C6orf106 homolog OS=Gallus gallus GN=RCJMB04_11e11 PE=2 SV=1 Back     alignment and function description
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3 Back     alignment and function description
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=1 SV=1 Back     alignment and function description
>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1 Back     alignment and function description
>sp|Q9H6K1|CF106_HUMAN Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1 SV=2 Back     alignment and function description
>sp|Q3TT38|CF106_MOUSE Uncharacterized protein C6orf106 homolog OS=Mus musculus GN=D17Wsu92e PE=2 SV=2 Back     alignment and function description
>sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G2.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP35G2.11c PE=4 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query614
359491205 836 PREDICTED: uncharacterized protein LOC10 0.933 0.685 0.467 1e-144
297733703 827 unnamed protein product [Vitis vinifera] 0.925 0.686 0.456 1e-138
255540511 754 zinc ion binding protein, putative [Rici 0.863 0.702 0.510 1e-135
449469725 789 PREDICTED: uncharacterized protein LOC10 0.851 0.662 0.424 1e-115
78068099 870 ubiquitin-associated protein [Triticum a 0.877 0.619 0.366 8e-88
337732515 843 JOKA2 [Nicotiana tabacum] 0.382 0.278 0.587 1e-83
356564960 847 PREDICTED: uncharacterized protein LOC10 0.640 0.463 0.423 8e-83
15233935704 ubiquitin-associated (UBA) zinc-finger a 0.421 0.367 0.528 3e-82
224028489 842 unknown [Zea mays] gi|413937566|gb|AFW72 0.863 0.629 0.363 2e-81
297803642709 ubiquitin-associated /TS-N domain-contai 0.418 0.362 0.521 5e-80
>gi|359491205|ref|XP_002277480.2| PREDICTED: uncharacterized protein LOC100253588 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 305/652 (46%), Positives = 403/652 (61%), Gaps = 79/652 (12%)

Query: 1   MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG 60
           MEST VIKVKYG+TLRRFNA +DEN +LDLDI+GLRAK+ +LFN   D+DLTLTY+DEDG
Sbjct: 1   MESTKVIKVKYGNTLRRFNACLDENGELDLDINGLRAKVITLFNLVPDADLTLTYIDEDG 60

Query: 61  DIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDID 120
           D+VTLVDD+DL DVMRQRLKFLRI V LN +K G+++ RSSGSSTP+RSP    P  D +
Sbjct: 61  DVVTLVDDEDLHDVMRQRLKFLRITVLLNIEKDGRSHTRSSGSSTPMRSPFNLRPFQDGN 120

Query: 121 SK----ISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKMGLSHVNVVPQ 176
           +     ++E +KSVPEPL EA SKLSTD  SKAAS++P++++++ C SKMG S++N V  
Sbjct: 121 ADGNAGVAEFIKSVPEPLLEAFSKLSTDFTSKAASSAPVLSEVLTCLSKMGESYLNSVSP 180

Query: 177 SQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEVFPKTSLKEVL---P 233
           S+ GA+SS    +S+N +   V+ +    + D  +E+LP   LK+    + L EV    P
Sbjct: 181 SEVGADSSTHNRSSDNSVDPLVTENTKAPQADSKQELLPTAELKDS--NSKLNEVGTTGP 238

Query: 234 KTTAVDSTSKSSKDVDIGIAARGVGVLLSSVDLNLPPVDSAPSGSTMS-IAPPASNITAG 292
            +  + S   ++ + +  + +      ++ V  N P VD        S  AP A +  A 
Sbjct: 239 VSRGIASNVPATDNKEANVESN-----VAPVASNDPSVDKRKETKKESKYAPIACSDCAN 293

Query: 293 DDRMDANENSVHQTTSVPMSTS-------------SVD-----------PMWPSDVNQPR 328
           D  +D  + +  ++   P++ S             SVD             W +   +P 
Sbjct: 294 DPSVDKRKETKKESKYPPVACSDCASDGRKGTKKGSVDHYGEKLADCVASTWNAGYPRPY 353

Query: 329 TADLG-------------------------GNLSTNCPFSGIPVANESAGSS-RHPRRGH 362
             D                           GN  ++CPF+G+P  N S  S+   PR   
Sbjct: 354 NPDPSHITCLDSGISKKISSDGRNYAAPNFGNPFSDCPFTGMPPVNNSLLSTGARPRPPL 413

Query: 363 FKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422
           FKR + +DA+ G FHKG++CDGCGVHPITGPRFKSKVK+DYDLCSICF+ MG+EADYIRI
Sbjct: 414 FKRSY-KDAMGGTFHKGIQCDGCGVHPITGPRFKSKVKEDYDLCSICFSDMGNEADYIRI 472

Query: 423 DRPVHYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFI 482
           D P   +HP  F+  +D  Q   + +P      +G           GI+  +  LDS FI
Sbjct: 473 DWPAR-QHPWSFKMSHDPMQQPEVHSPAQPYPSIGC----------GIRVRQPHLDSRFI 521

Query: 483 LDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGV 542
           LDVNV+DGT+MAPS PFTK WRMRNTGN  W RG++LVWIGGD+FS+  SVEI    D V
Sbjct: 522 LDVNVIDGTVMAPSIPFTKTWRMRNTGNAVWARGTRLVWIGGDRFSEKDSVEI--CRDCV 579

Query: 543 PVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESI 594
           P+  E++I+VDFTAPE PGRYISYWRM++PSG  FGQRVWVLIQV  +L+ +
Sbjct: 580 PIGEELEISVDFTAPEFPGRYISYWRMAAPSGQTFGQRVWVLIQVDSSLKDL 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297733703|emb|CBI14950.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255540511|ref|XP_002511320.1| zinc ion binding protein, putative [Ricinus communis] gi|223550435|gb|EEF51922.1| zinc ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449469725|ref|XP_004152569.1| PREDICTED: uncharacterized protein LOC101205935 [Cucumis sativus] gi|449487835|ref|XP_004157824.1| PREDICTED: uncharacterized LOC101205935 [Cucumis sativus] Back     alignment and taxonomy information
>gi|78068099|gb|ABB18390.1| ubiquitin-associated protein [Triticum aestivum] Back     alignment and taxonomy information
>gi|337732515|gb|AEI71779.1| JOKA2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356564960|ref|XP_003550713.1| PREDICTED: uncharacterized protein LOC100816395 [Glycine max] Back     alignment and taxonomy information
>gi|15233935|ref|NP_194200.1| ubiquitin-associated (UBA) zinc-finger and PB1 domain-containing protein [Arabidopsis thaliana] gi|4220521|emb|CAA22994.1| putative protein [Arabidopsis thaliana] gi|7269320|emb|CAB79379.1| putative protein [Arabidopsis thaliana] gi|17065502|gb|AAL32905.1| putative protein [Arabidopsis thaliana] gi|22136162|gb|AAM91159.1| putative protein [Arabidopsis thaliana] gi|22655264|gb|AAM98222.1| unknown protein [Arabidopsis thaliana] gi|30725524|gb|AAP37784.1| At4g24690 [Arabidopsis thaliana] gi|110735110|gb|ABG89125.1| p62-like [synthetic construct] gi|332659543|gb|AEE84943.1| ubiquitin-associated (UBA) zinc-finger and PB1 domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224028489|gb|ACN33320.1| unknown [Zea mays] gi|413937566|gb|AFW72117.1| hypothetical protein ZEAMMB73_748913 [Zea mays] Back     alignment and taxonomy information
>gi|297803642|ref|XP_002869705.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315541|gb|EFH45964.1| ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query614
TAIR|locus:2121899 704 NBR1 "next to BRCA1 gene 1" [A 0.521 0.454 0.475 1.2e-108
DICTYBASE|DDB_G0270098 646 sqstm1 "sequestosome-1" [Dicty 0.210 0.199 0.364 3.7e-21
ASPGD|ASPL0000035364800 AN10407 [Emericella nidulans ( 0.213 0.163 0.337 2.3e-14
UNIPROTKB|Q5RC94 894 NBR1 "Next to BRCA1 gene 1 pro 0.309 0.212 0.306 2.7e-12
ZFIN|ZDB-GENE-030131-9112 1014 nbr1 "neighbor of brca1 gene 1 0.236 0.142 0.357 3.2e-12
UNIPROTKB|E1C6F8 941 E1C6F8 "Uncharacterized protei 0.169 0.110 0.375 5.5e-12
UNIPROTKB|I3LV11 986 NBR1 "Uncharacterized protein" 0.193 0.120 0.349 6.7e-12
UNIPROTKB|B7Z5R6 837 NBR1 "Next to BRCA1 gene 1 pro 0.174 0.127 0.383 1.2e-11
UNIPROTKB|Q9H6K1298 C6orf106 "Uncharacterized prot 0.167 0.345 0.345 1.5e-11
MGI|MGI:106281291 D17Wsu92e "DNA segment, Chr 17 0.167 0.353 0.345 1.7e-11
TAIR|locus:2121899 NBR1 "next to BRCA1 gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 790 (283.2 bits), Expect = 1.2e-108, Sum P(2) = 1.2e-108
 Identities = 166/349 (47%), Positives = 231/349 (66%)

Query:   269 PPVDSAPSGSTMSIAPPASNITAGDDRMDANENSVHQTTSVPMSTSS-VDPMWPSDVNQP 327
             P      SG+++S   P+    AG  + D +E +  QT   P++ +        +  + P
Sbjct:   179 PVTKPGSSGASLSRDVPS----AGGKK-DISERT--QTGRKPVNLNEPTGAHSKTSGHVP 231

Query:   328 RTADLGGNLSTNCPFSGIPVANESAGS----SRHPRRG-HFKRGFNRD--ALMGMFHKGV 380
              ++ LG N +  CPFSG  + N S  +    ++HPRR  H K+  N D    +G+FHKG+
Sbjct:   232 NSSGLGANFN-ECPFSGSTM-NYSCPNPVNLNKHPRRVCHSKKSTNGDYWTSLGVFHKGI 289

Query:   381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRGLYDH 440
             RCDGCGV PITGPRFKSKVK+DYDLC+IC++ MG+E DY R+D+PV  +H  PFRG +  
Sbjct:   290 RCDGCGVLPITGPRFKSKVKEDYDLCTICYSVMGNEGDYTRMDKPVSVQHLHPFRGPFTQ 349

Query:   441 RQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFT 500
               N WL  P P   + G  GAP       ++  R +LDS F+LDVNV+DGT++APS PFT
Sbjct:   350 FPNPWLSHPVPRATN-G--GAP-------LRCTRPKLDSRFVLDVNVIDGTVVAPSAPFT 399

Query:   501 KIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELP 560
             KIW+MRN+G+L WP+G+Q+VWIGGD+F + +SV++++P +GVP+  E+D+ VDF APELP
Sbjct:   400 KIWKMRNSGSLVWPQGTQIVWIGGDRFCNSLSVDLQIPKEGVPIYSELDVKVDFVAPELP 459

Query:   561 GRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLVAS 609
             GRYISYWRM++  G KFGQRVWVLI V  +L++  ++ E +   NL AS
Sbjct:   460 GRYISYWRMATSDGAKFGQRVWVLIHVDASLKNSVVN-EFHGL-NLNAS 506
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005773 "vacuole" evidence=IDA
GO:0043130 "ubiquitin binding" evidence=IDA
GO:0051258 "protein polymerization" evidence=IDA
DICTYBASE|DDB_G0270098 sqstm1 "sequestosome-1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035364 AN10407 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RC94 NBR1 "Next to BRCA1 gene 1 protein" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9112 nbr1 "neighbor of brca1 gene 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6F8 E1C6F8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LV11 NBR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z5R6 NBR1 "Next to BRCA1 gene 1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6K1 C6orf106 "Uncharacterized protein C6orf106" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:106281 D17Wsu92e "DNA segment, Chr 17, Wayne State University 92, expressed" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query614
cd0639891 cd06398, PB1_Joka2, The PB1 domain is present in t 7e-33
cd0234243 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type 6e-21
cd0599281 cd05992, PB1, The PB1 domain is a modular domain m 5e-15
pfam0056484 pfam00564, PB1, PB1 domain 2e-11
cd0224946 cd02249, ZZ, Zinc finger, ZZ type 4e-11
smart0066681 smart00666, PB1, PB1 domain 5e-11
cd0234445 cd02344, ZZ_HERC2, Zinc finger, ZZ type 1e-09
cd0233849 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type 6e-09
cd0234043 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type 2e-08
cd0233945 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type 5e-08
pfam0056946 pfam00569, ZZ, Zinc finger, ZZ type 2e-07
smart0029144 smart00291, ZnF_ZZ, Zinc-binding domain, present i 4e-07
cd0640181 cd06401, PB1_TFG, The PB1 domain found in TFG prot 6e-05
cd0234148 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type 2e-04
cd0233449 cd02334, ZZ_dystrophin, Zinc finger, ZZ type 0.001
cd0639782 cd06397, PB1_UP1, Uncharacterized protein 1 0.001
cd0233549 cd02335, ZZ_ADA2, Zinc finger, ZZ type 0.002
cd0640986 cd06409, PB1_MUG70, The MUG70 protein is a product 0.003
>gnl|CDD|99720 cd06398, PB1_Joka2, The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information 
 Score =  120 bits (304), Expect = 7e-33
 Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 6/92 (6%)

Query: 5  MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT 64
          +V+KVKYG TLRRF   V EN +LDL++DGLR K++ LF+   D+DL+LTY DEDGD+VT
Sbjct: 1  LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT 59

Query: 65 LVDDDDLCDVMRQ-----RLKFLRIDVHLNND 91
          LVDD+DL D ++      RL  LRIDV ++ D
Sbjct: 60 LVDDNDLTDAIQYFCSGSRLNPLRIDVTVDYD 91

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 91
>gnl|CDD|239082 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|214770 smart00666, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>gnl|CDD|99722 cd06401, PB1_TFG, The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|99719 cd06397, PB1_UP1, Uncharacterized protein 1 Back     alignment and domain information
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|99730 cd06409, PB1_MUG70, The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 614
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 99.84
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 99.81
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 99.75
KOG4351244 consensus Uncharacterized conserved protein [Funct 99.51
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 99.49
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 99.49
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 99.48
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 99.45
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 99.45
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 99.43
cd0599281 PB1 The PB1 domain is a modular domain mediating s 99.43
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 99.41
KOG4582278 consensus Uncharacterized conserved protein, conta 99.36
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 99.34
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 99.33
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 99.25
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 99.22
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 99.22
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 99.21
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 99.2
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 99.12
KOG4351244 consensus Uncharacterized conserved protein [Funct 99.11
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 99.07
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 99.05
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 98.98
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 98.92
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 98.91
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 98.88
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 98.81
KOG1280 381 consensus Uncharacterized conserved protein contai 98.8
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 98.47
KOG4286 966 consensus Dystrophin-like protein [Cell motility; 98.25
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 98.13
KOG4301434 consensus Beta-dystrobrevin [Cytoskeleton] 97.8
cd0639992 PB1_P40 The PB1 domain is essential part of the p4 97.5
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.48
cd0641097 PB1_UP2 Uncharacterized protein 2. The PB1 domain 97.3
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 96.88
cd0639591 PB1_Map2k5 PB1 domain is essential part of the mit 96.82
KOG3606358 consensus Cell polarity protein PAR6 [Signal trans 96.78
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 96.37
KOG0695593 consensus Serine/threonine protein kinase [Signal 95.68
cd0641178 PB1_p51 The PB1 domain is present in the p51 prote 95.15
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 95.12
PF14874102 PapD-like: Flagellar-associated PapD-like 93.07
PF0201778 CIDE-N: CIDE-N domain; InterPro: IPR003508 This do 91.95
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 91.81
PF0764930 C1_3: C1-like domain; InterPro: IPR011424 This sho 91.17
PF14646426 MYCBPAP: MYCBP-associated protein family 90.1
cd0653680 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cel 88.18
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 86.43
cd0161578 CIDE_N CIDE_N domain, found at the N-terminus of t 85.36
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 85.33
smart0026674 CAD Domains present in proteins implicated in post 85.11
cd0178984 Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol 84.39
PF0310730 C1_2: C1 domain; InterPro: IPR004146 This short do 83.43
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 81.99
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information 
Probab=99.84  E-value=7.8e-21  Score=166.47  Aligned_cols=85  Identities=60%  Similarity=0.983  Sum_probs=79.8

Q ss_pred             eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc-----cC
Q 007185            5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RL   79 (614)
Q Consensus         5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q-----~l   79 (614)
                      |+|||+||+++|||+++..++ +.++++.+|+.||++.|+++++.+|+|+|+|||||+|+|++|+||.+||..     +.
T Consensus         1 l~vKv~y~~~~rRf~l~~~~~-~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~   79 (91)
T cd06398           1 LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRL   79 (91)
T ss_pred             CEEEEEeCCEEEEEEeccccc-cCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCC
Confidence            689999999999999998766 789999999999999999999999999999999999999999999999843     69


Q ss_pred             ceEEEEEEecC
Q 007185           80 KFLRIDVHLNN   90 (614)
Q Consensus        80 ~~L~i~V~l~~   90 (614)
                      ++|||.|++++
T Consensus        80 ~~lrl~v~~~~   90 (91)
T cd06398          80 NPLRIDVTVDY   90 (91)
T ss_pred             ceEEEEEEEec
Confidence            99999999876

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>KOG4351 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>KOG4351 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton] Back     alignment and domain information
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>cd06410 PB1_UP2 Uncharacterized protein 2 Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development Back     alignment and domain information
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45) Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation Back     alignment and domain information
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B Back     alignment and domain information
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query614
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 3e-15
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 1e-13
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 3e-07
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 2e-05
1pqs_A77 Cell division control protein 24; alpha and beta p 8e-05
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 2e-04
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 2e-04
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 8e-04
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98 Back     alignment and structure
 Score = 70.9 bits (173), Expect = 3e-15
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEA-DYIRIDRPVHYRHPRPFR 435
           H G+ C+ C   PI G  +K     +Y LC  CF +    +  +   ++          R
Sbjct: 29  HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRNQKWRSLEKR 88
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Length = 89 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Length = 77 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Length = 98 Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Length = 117 Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Length = 86 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query614
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 99.61
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 99.59
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 99.59
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 99.58
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 99.47
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 99.47
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 99.44
2bkf_A87 Zinc-finger protein NBR1 (NEXT to breast cancer 1; 99.28
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 99.24
1wj6_A101 KIAA0049 protein, RSGI RUH-024; PB1 domain, protei 99.24
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 99.15
1pqs_A77 Cell division control protein 24; alpha and beta p 98.85
1oey_J107 P40-PHOX, neutrophil cytosol factor 4; immune syst 98.76
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 97.96
1ip9_A85 BEM1 protein; ubiquitin alpha/beta roll, signaling 97.2
2npt_A106 Dual specificity mitogen-activated protein kinase; 96.29
2cu1_A103 Mitogen-activated protein kinase kinase kinase 2; 92.72
1v5n_A89 PDI-like hypothetical protein AT1G60420; DC1 domai 85.91
2jrh_A94 Mitogen-activated protein kinase kinase kinase 3; 85.51
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 84.7
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 82.96
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 82.95
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 81.46
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 80.39
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 80.34
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
Probab=99.61  E-value=2e-15  Score=133.90  Aligned_cols=84  Identities=20%  Similarity=0.339  Sum_probs=68.9

Q ss_pred             eeEEEEee------CCcceeeeeecCCCCCc-----cccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHH
Q 007185            4 TMVIKVKY------GDTLRRFNARVDENEKL-----DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLC   72 (614)
Q Consensus         4 ~lviKvk~------gddlRRf~~~~~~n~~~-----~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~   72 (614)
                      .++|||.|      ++++|||.++++.+-..     -.++..|+.+|+++|..-.+.+|+|+|+|||||+|||.+|+||.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~   84 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELT   84 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHH
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHH
Confidence            48999999      68999999997532111     14788999999999953347789999999999999999999999


Q ss_pred             HHH-HccCceEEEEEE
Q 007185           73 DVM-RQRLKFLRIDVH   87 (614)
Q Consensus        73 ~a~-~q~l~~L~i~V~   87 (614)
                      .|+ ..+...|||.|+
T Consensus        85 ~Al~~~~~~~lRlyVk  100 (102)
T 2kkc_A           85 MAMSYVKDDIFRIYIK  100 (102)
T ss_dssp             HHHHHCCSSEEEEEEE
T ss_pred             HHHHhcCCCeEEEEEE
Confidence            998 435568899886
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Back     alignment and structure
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Back     alignment and structure
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Back     alignment and structure
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A Back     alignment and structure
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A Back     alignment and structure
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Back     alignment and structure
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 614
d2dipa185 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p 6e-14
d2fc7a169 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p 8e-11
d1ip9a_85 d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker' 1e-10
d2bkfa185 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NB 1e-08
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 2e-06
d1wmha_83 d.15.2.2 (A:) Protein kinase C, iota type {Human ( 0.001
d1wmhb_82 d.15.2.2 (B:) Partitioning defective-6 homolog alp 0.003
d1pqsa_77 d.15.2.2 (A:) Cell division control protein 24, CD 0.004
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 6e-14
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 12/67 (17%)

Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHPRPFRG 436
           H G+ C+ C   PI G  +K     +Y LC  CF +              H  H   FR 
Sbjct: 22  HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS------------YCHLSHTFTFRE 69

Query: 437 LYDHRQN 443
             + +  
Sbjct: 70  KRNQKWR 76
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query614
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 99.44
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 99.44
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 99.33
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 99.31
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 99.09
d1wmha_83 Protein kinase C, iota type {Human (Homo sapiens) 98.47
d1wmhb_82 Partitioning defective-6 homolog alpha, PAR-6 alph 98.41
d1pqsa_77 Cell division control protein 24, CDC24, C-termina 97.75
d1oeyj_105 Neutrophil cytosol factor 4 (p40phox component of 97.68
d2npta1105 Mitogen activated protein kinase kinase 5, Map2k5 97.11
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 94.37
d1oeya_82 Neutrophil cytosol factor 2 (p67phox component of 94.27
d1v5na_89 Pdi-like hypothetical protein At1g60420 {Thale cre 93.45
d1t0ya_90 Ubiquitin-like domain of tubulin folding cofactor 91.34
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 90.76
d2nptb182 Mitogen-activated protein kinase kinase kinase 2, 84.02
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 83.98
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-13  Score=115.33  Aligned_cols=80  Identities=18%  Similarity=0.390  Sum_probs=69.6

Q ss_pred             CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH---Hc
Q 007185            1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ   77 (614)
Q Consensus         1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~---~q   77 (614)
                      |+-.+.|||.||++.|||.++..    -.-.+++|+.+|+..|+|.   +|.|||.|+|||.|+|..|+||.+++   ..
T Consensus         1 mep~vtvKvtf~~dt~RF~ls~~----~~~~~~~L~~~i~~rf~l~---~~~lkY~Ddd~e~v~l~~d~dl~E~~~~a~~   73 (85)
T d2bkfa1           1 MEPQVTLNVTFKNEIQSFLVSDP----ENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK   73 (85)
T ss_dssp             CCCCEEEEEEETTEEEEEEESCG----GGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred             CCccEEEEEEECCceEEEEecCC----CCCcHHHHHHHHHHhcCcc---cceEEEEcCCCCEEEEecHHHHHHHHHHHhc
Confidence            88899999999999999999743    2357899999999999994   59999999999999999999999865   33


Q ss_pred             cCceEEEEEE
Q 007185           78 RLKFLRIDVH   87 (614)
Q Consensus        78 ~l~~L~i~V~   87 (614)
                      +-+.|||.|.
T Consensus        74 ~~~~irl~v~   83 (85)
T d2bkfa1          74 QGNQLQMQVH   83 (85)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            5688999874
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure