Citrus Sinensis ID: 007192

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---

MQSAILTPRTATFTTPSLPLTHTHSTRNTRRPTSLRVSAAVNADPSPPPTSTTSPPKLNKYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTDE

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHccccEEEEcccEEccccccccccccccccHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccEEEEEcccccccccccEEccEEEHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccEEEcccccccccccEEEEEccccccccEEEEEcccccEEEEcccccccHHHHHHHHHcccccccccEEEEEccccccccccccccHHHHHHHHccccccEEEEccccccccccccccccccccccccccEEEEEcccEEEEEccccEEEEEccHHHHHHHHHccccccccccccHHHHHHHHcccccccccccc

cccHHcccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHcccccccccHHHHHHHccccHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEcEEEEcccccccccccEEccccHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHccccEEEEEccccccccccccEEEEEEHHHHHHHHHcccccHHHHHHHHHHccccccccccHHcHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccHcccccccccHHHHHHHcccHHHHHHHHHHccccccccEEEccHcHHHHHHccccccccccEEEcccccccccccEEEEEccccccccEEEEEccccccEcccEEEEccHHHHHHHHHcccEEccccEEEEEEcccccccccHHHccccHHHHcccccccEEEEEccccccccccEEEEcccHHHHccccEEEEEcccEEEEEccccEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccEccc

mqsailtprtatfttpslplththstrntrrptslrvsaavnadpsppptsttsppklnkyssrvtepksqggsqailhgvglseadmskpqvgisSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAqwydanisipgcdknmpgtimamgrlnrpgimvyggtikpghfqghtYDIVSAFQVYGEyvsgsisdeQRMNVVlnscpgagacggmytANTMASAIEAMGmslpysssipaedplkldECRLAGKYLLELLRMdlkprdiitKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFqkvsdevpfladlkpsgkyvMEDVHKIGGTPAVIRYLLELgfldgdcmtvtgktlaenaktfphlsegqdiirplsnpikktghiqvlrgnlapegsvakitgkeglyfsgpalvfegEESMIAAisedpmsfkGKVVVIrgegpkggpgmpemltptsaimgagLGKEVALLtdgrfsggshgfvvghvcpeaqdggpigliqngdiinidvqkrridvqltDEEMEErrrkwtpppnkvnrgVLYKYIKNVqsasngcvtde

mqsailtprtatfttpslplththstrntrrptSLRVSaavnadpsppptsttsppklnKYSSRVtepksqggsQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLEllrmdlkprdiitkKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAktfphlsegqdiIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIqngdiinidvqkrridvqltdeemeerrrkwtpppnkvnrgvLYKYIknvqsasngcvtde

MQSAILTPRTATFTTPSLPLTHTHSTRNTRRPTSLRVSAAVNADpsppptsttsppKLNKYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRgegpkggpgmpemLTPTSAIMGAGLGKEVALLTDGRfsggshgfvvghvCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTDE

*******************************************************************************************QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPY********PLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIR******************AIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQL******************VNRGVLYKYIKNV***********

****************************************************************VTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD*

MQSAILTPRTATFTTPSLPL***************RVSAAV*******************************GSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTD**********TPPPNKVNRGVLYKYIKNVQS*********

********RTATFTTPSLPLT**********P***********************************PKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQS*********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		613	2.2.26 [Sep-21-2011]
Q7UJ69		567	Dihydroxy-acid dehydratas	yes	no	0.905	0.978	0.685	0.0
B2SH83		560	Dihydroxy-acid dehydratas	yes	no	0.903	0.989	0.636	0.0
A4IYA1		560	Dihydroxy-acid dehydratas	yes	no	0.903	0.989	0.634	0.0
A0Q6R5		560	Dihydroxy-acid dehydratas	yes	no	0.903	0.989	0.645	0.0
B0TZC0		560	Dihydroxy-acid dehydratas	yes	no	0.903	0.989	0.639	0.0
Q5NH32		551	Dihydroxy-acid dehydratas	yes	no	0.892	0.992	0.629	0.0
Q14II4		551	Dihydroxy-acid dehydratas	yes	no	0.892	0.992	0.629	0.0
Q10318		598	Putative dihydroxy-acid d	yes	no	0.905	0.928	0.639	0.0
A6GWT7		558	Dihydroxy-acid dehydratas	yes	no	0.903	0.992	0.607	0.0
P39522		585	Dihydroxy-acid dehydratas	yes	no	0.916	0.960	0.583	0.0

>sp\|Q7UJ69\|ILVD_RHOBA Dihydroxy-acid dehydratase OS=Rhodopirellula baltica (strain SH1) GN=ilvD PE=3 SV=2	Back alignment and function desciption

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/556 (68%), Positives = 458/556 (82%), Gaps = 1/556 (0%)

Query: 58  LNKYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVK 117
           LNKYSS++T+PKSQG SQA+L+  G+S  DM+KPQVGI S+WYEGN+CNMHLL L+  VK
Sbjct: 13  LNKYSSKITQPKSQGASQAMLYATGMSSEDMNKPQVGIGSMWYEGNSCNMHLLDLAADVK 72

Query: 118 RGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPG 177
            GV +AGMVG RFNTIGVSD ISMGT GM FSLQSRDLIADSIET+M AQWYDA I++PG
Sbjct: 73  AGVTDAGMVGMRFNTIGVSDGISMGTDGMSFSLQSRDLIADSIETIMGAQWYDALITLPG 132

Query: 178 CDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRM 237
           CDKNMPG +MAMGRLNRP IMVYGGTIKPG ++    DIVSAFQ YG++++G IS+E+R 
Sbjct: 133 CDKNMPGCLMAMGRLNRPSIMVYGGTIKPGSYRDEKLDIVSAFQCYGQFIAGQISEEERS 192

Query: 238 NVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLEL 297
            +V  SCPGAGACGGMYTANTMA+AIEA+GM+LPYS+SIPAE P K +EC+ AG  +LEL
Sbjct: 193 EIVRRSCPGAGACGGMYTANTMATAIEALGMALPYSASIPAEHPEKKEECKRAGLAILEL 252

Query: 298 LRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVP 357
           L+ D+KPRDI+T+ +  +AMV +MALGGSTNAVLHLIA+ARSV + L+I++FQ VSD  P
Sbjct: 253 LKKDIKPRDIMTRGAFEDAMVTLMALGGSTNAVLHLIAMARSVDVPLTIEDFQSVSDRTP 312

Query: 358 FLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEG 417
           FLADLKPSGK+V ED+H +GGTPAV++YLLE G + G+ MTVTGKTLAEN    P L  G
Sbjct: 313 FLADLKPSGKFVQEDLHSVGGTPAVMKYLLEKGMIKGEHMTVTGKTLAENLADLPGLKTG 372

Query: 418 QDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISE 477
           Q I+  +  PIKK+GHI++L+G+LA EG+VAKITGKEGL FSGPA V++ EE M+AA+ +
Sbjct: 373 QKIVSTVEEPIKKSGHIRILKGSLATEGAVAKITGKEGLQFSGPARVYDNEELMLAALEQ 432

Query: 478 DPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVG 537
             +  KG VVVIR EGPKGGPGMPEMLTPTSAIMGAGLG +VA+LTDGRFSGGSHGF+VG
Sbjct: 433 KQIQ-KGDVVVIRYEGPKGGPGMPEMLTPTSAIMGAGLGSDVAMLTDGRFSGGSHGFIVG 491

Query: 538 HVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYK 597
           H+ PEAQ GGPI LI++GD I ID +   +D+++   E+E RR KWT PP K  RG LYK
Sbjct: 492 HITPEAQVGGPIALIEDGDTITIDAETNSLDLEVDAAELEARRSKWTAPPLKATRGTLYK 551

Query: 598 YIKNVQSASNGCVTDE 613
           YIK V+SAS GCVTDE
Sbjct: 552 YIKCVKSASEGCVTDE 567

Rhodopirellula baltica (strain SH1) (taxid: 243090)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9

>sp\|B2SH83\|ILVD_FRATM Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|A4IYA1\|ILVD_FRATW Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|A0Q6R5\|ILVD_FRATN Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. novicida (strain U112) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|B0TZC0\|ILVD_FRAP2 Dihydroxy-acid dehydratase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|Q5NH32\|ILVD_FRATT Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|Q14II4\|ILVD_FRAT1 Dihydroxy-acid dehydratase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|Q10318\|ILV3_SCHPO Putative dihydroxy-acid dehydratase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.06c PE=2 SV=1	Back alignment and function description

>sp\|A6GWT7\|ILVD_FLAPJ Dihydroxy-acid dehydratase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=ilvD PE=3 SV=1	Back alignment and function description

>sp\|P39522\|ILV3_YEAST Dihydroxy-acid dehydratase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILV3 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		613
255554188		615	dihydroxy-acid dehydratase, putative [Ri	0.996	0.993	0.849	0.0
224072636		605	predicted protein [Populus trichocarpa]	0.986	1.0	0.846	0.0
224057608		611	predicted protein [Populus trichocarpa]	0.995	0.998	0.845	0.0
15229546		608	dihydroxy-acid dehydratase [Arabidopsis	0.990	0.998	0.840	0.0
297835490		609	dehydratase family [Arabidopsis lyrata s	0.991	0.998	0.835	0.0
14532594		608	putative dihydroxyacid dehydratase [Arab	0.990	0.998	0.838	0.0
334185582		606	dihydroxy-acid dehydratase [Arabidopsis	0.986	0.998	0.837	0.0
225433434		610	PREDICTED: dihydroxy-acid dehydratase-li	0.995	1.0	0.820	0.0
449432448		620	PREDICTED: dihydroxy-acid dehydratase-li	0.991	0.980	0.819	0.0
357453587		598	Dihydroxy-acid dehydratase [Medicago tru	0.975	1.0	0.818	0.0

>gi\|255554188\|ref\|XP_002518134.1\| dihydroxy-acid dehydratase, putative [Ricinus communis] gi\|223542730\|gb\|EEF44267.1\| dihydroxy-acid dehydratase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1066 bits (2758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/617 (84%), Positives = 562/617 (91%), Gaps = 6/617 (0%)

Query: 1   MQSAILTPRTATFTTPSLPLTHTHSTRNTRRPTSLRVSA----AVNADPSPPPTSTTSPP 56
           MQS  ++PR AT      P+TH       R  +SLRV A    AV  +PSP   +TT   
Sbjct: 1   MQSTFISPRPAT--PFHCPITHHPHFSTRRSSSSLRVVAQSPPAVTTEPSPSQATTTVSQ 58

Query: 57  KLNKYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAV 116
           KLNKYSSRVTEPKSQGGSQAILHGVGLS+ D+SKPQ+GISSVWYEGNTCNMHLL LSEAV
Sbjct: 59  KLNKYSSRVTEPKSQGGSQAILHGVGLSDEDLSKPQIGISSVWYEGNTCNMHLLSLSEAV 118

Query: 117 KRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIP 176
           K+GV++AGMVGFRFNTIGVSDAISMGT+GMCFSLQSRDLIADSIETVMSAQWYD NISIP
Sbjct: 119 KQGVQDAGMVGFRFNTIGVSDAISMGTRGMCFSLQSRDLIADSIETVMSAQWYDGNISIP 178

Query: 177 GCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQR 236
           GCDKNMPGTIMAMGRLNRP IMVYGGTIKPGHF GHTYDIVSAFQVYGEYVSGSISDE R
Sbjct: 179 GCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHFNGHTYDIVSAFQVYGEYVSGSISDEDR 238

Query: 237 MNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLE 296
            NVV NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAE+ LKLDECRLAGKYLLE
Sbjct: 239 RNVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAENQLKLDECRLAGKYLLE 298

Query: 297 LLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEV 356
           LLRMDLKPRDIIT+KSLRNAMV+VMALGGSTNAVLHLIAIARSVGLEL++D+FQKVSDEV
Sbjct: 299 LLRMDLKPRDIITRKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDEV 358

Query: 357 PFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSE 416
           PFLADLKPSGKYVMED+HKIGGTPAVIRYLLE GF+DGDC+TVTGKTLAEN +  P L+E
Sbjct: 359 PFLADLKPSGKYVMEDLHKIGGTPAVIRYLLEHGFMDGDCLTVTGKTLAENVRNCPPLAE 418

Query: 417 GQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAIS 476
           GQDIIR L NPIKKTGH+Q+LRGNLAPEGSVAKITGKEGLYFSGPAL+FEGEE+MIAAIS
Sbjct: 419 GQDIIRALENPIKKTGHLQILRGNLAPEGSVAKITGKEGLYFSGPALIFEGEEAMIAAIS 478

Query: 477 EDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVV 536
           EDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGK+ ALLTDGRFSGGSHGFVV
Sbjct: 479 EDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKDCALLTDGRFSGGSHGFVV 538

Query: 537 GHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLY 596
           GH+CPEAQ+GGPIGLI+NGDIIN+DV++RRIDVQLTD+E+ ER+R WTPPP K   GVLY
Sbjct: 539 GHICPEAQEGGPIGLIRNGDIINVDVRERRIDVQLTDQELAERKRNWTPPPYKATGGVLY 598

Query: 597 KYIKNVQSASNGCVTDE 613
           KYIKNVQSAS GCVTDE
Sbjct: 599 KYIKNVQSASKGCVTDE 615

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224072636\|ref\|XP_002303818.1\| predicted protein [Populus trichocarpa] gi\|222841250\|gb\|EEE78797.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224057608\|ref\|XP_002299283.1\| predicted protein [Populus trichocarpa] gi\|222846541\|gb\|EEE84088.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|15229546\|ref\|NP_189036.1\| dihydroxy-acid dehydratase [Arabidopsis thaliana] gi\|17933301\|gb\|AAL48233.1\|AF446360_1 AT3g23940/F14O13_13 [Arabidopsis thaliana] gi\|9294662\|dbj\|BAB03011.1\| dihydroxy-acid dehydratase [Arabidopsis thaliana] gi\|24030434\|gb\|AAN41372.1\| putative dihydroxyacid dehydratase [Arabidopsis thaliana] gi\|332643313\|gb\|AEE76834.1\| dihydroxy-acid dehydratase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297835490\|ref\|XP_002885627.1\| dehydratase family [Arabidopsis lyrata subsp. lyrata] gi\|297331467\|gb\|EFH61886.1\| dehydratase family [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|14532594\|gb\|AAK64025.1\| putative dihydroxyacid dehydratase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334185582\|ref\|NP_001189959.1\| dihydroxy-acid dehydratase [Arabidopsis thaliana] gi\|332643314\|gb\|AEE76835.1\| dihydroxy-acid dehydratase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225433434\|ref\|XP_002285667.1\| PREDICTED: dihydroxy-acid dehydratase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449432448\|ref\|XP_004134011.1\| PREDICTED: dihydroxy-acid dehydratase-like isoform 1 [Cucumis sativus] gi\|449522598\|ref\|XP_004168313.1\| PREDICTED: dihydroxy-acid dehydratase-like isoform 1 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357453587\|ref\|XP_003597071.1\| Dihydroxy-acid dehydratase [Medicago truncatula] gi\|355486119\|gb\|AES67322.1\| Dihydroxy-acid dehydratase [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		613
TAIR\|locus:2076116		608	AT3G23940 [Arabidopsis thalian	0.990	0.998	0.789	1.2e-255
UNIPROTKB\|G4MKI2		595	MGG_05345 "Dihydroxy-acid dehy	0.954	0.983	0.572	5e-179
POMBASE\|SPAC17G8.06c		598	SPAC17G8.06c "dihydroxy-acid d	0.905	0.928	0.600	1.2e-175
ASPGD\|ASPL0000007677		613	AN6346 [Emericella nidulans (t	0.905	0.905	0.583	6.9e-173
SGD\|S000003777		585	ILV3 "Dihydroxyacid dehydratas	0.905	0.948	0.554	1.3e-162
CGD\|CAL0004803		589	ILV3 [Candida albicans (taxid:	0.905	0.942	0.537	2.9e-158
ASPGD\|ASPL0000009745		603	AN4058 [Emericella nidulans (t	0.893	0.908	0.460	8.1e-131
UNIPROTKB\|P65154		575	ilvD "Dihydroxy-acid dehydrata	0.892	0.951	0.457	2.9e-119
TIGR_CMR\|CHY_0516		553	CHY_0516 "dihydroxy-acid dehyd	0.877	0.972	0.394	2.6e-102
TIGR_CMR\|BA_1853		557	BA_1853 "dihydroxy-acid dehydr	0.867	0.955	0.398	1.8e-101

TAIR\|locus:2076116 AT3G23940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2461 (871.4 bits), Expect = 1.2e-255, P = 1.2e-255
 Identities = 485/614 (78%), Positives = 528/614 (85%)

Query:     1 MQSAILTPRTATFTTPSLPLTHTHSTRNTRRPTSLRVSA-AVNADXXXXXXXXXXXXKLN 59
             MQ+ I +PR   F  P  PL  +H+  N+RRP+ +  SA +V AD            KLN
Sbjct:     1 MQATIFSPRATLF--PCKPLLPSHNV-NSRRPSIISCSAQSVTADPSPPITDTN---KLN 54

Query:    60 KYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRG 119
             KYSSR+TEPKSQGGSQAILHGVGLS+ D+ KPQ+GISSVWYEGNTCNMHLL+LSEAVK G
Sbjct:    55 KYSSRITEPKSQGGSQAILHGVGLSDDDLLKPQIGISSVWYEGNTCNMHLLKLSEAVKEG 114

Query:   120 VEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCD 179
             VE AGMVGFRFNTIGVSDAISMGT+GMCFSLQSRDLIADSIETVMSAQWYD NISIPGCD
Sbjct:   115 VENAGMVGFRFNTIGVSDAISMGTRGMCFSLQSRDLIADSIETVMSAQWYDGNISIPGCD 174

Query:   180 KNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNV 239
             KNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQ  TYDIVSAFQ YGE+VSGSISDEQR  V
Sbjct:   175 KNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQDKTYDIVSAFQSYGEFVSGSISDEQRKTV 234

Query:   240 VLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLR 299
             + +SCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELL+
Sbjct:   235 LHHSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLK 294

Query:   300 MDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFL 359
             MDLKPRDIIT KSLRNAMV VMALGGSTNAVLHLIAIARSVGLEL++D+FQKVSD VPFL
Sbjct:   295 MDLKPRDIITPKSLRNAMVSVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDAVPFL 354

Query:   360 ADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQD 419
             ADLKPSGKYVMED+HKIGGTPAV+RYLLELG +DGDCMTVTG+TLA+N +  P L+EGQ+
Sbjct:   355 ADLKPSGKYVMEDIHKIGGTPAVLRYLLELGLMDGDCMTVTGQTLAQNLENVPSLTEGQE 414

Query:   420 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDP 479
             IIRPLSNPIK+TGHIQ+LRG+LAP+GSVAKITGKEGLYFSGPALVFEGEESM+AAIS DP
Sbjct:   415 IIRPLSNPIKETGHIQILRGDLAPDGSVAKITGKEGLYFSGPALVFEGEESMLAAISADP 474

Query:   480 MSFKGKVVVIRXXXXXXXXXXXXXLTPTSAIMGAGLGKEVALLTDGRXXXXXXXXXXXXX 539
             MSFKG VVVIR             LTPTSAIMGAGLGKE ALLTDGR             
Sbjct:   475 MSFKGTVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKECALLTDGRFSGGSHGFVVGHI 534

Query:   540 CPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYI 599
             CPEAQ+GGPIGLI+NGDII ID+ K+RID Q++ EEM +RR+KWT P  KVNRGVLYKYI
Sbjct:   535 CPEAQEGGPIGLIKNGDIITIDIGKKRIDTQVSPEEMNDRRKKWTAPAYKVNRGVLYKYI 594

Query:   600 KNVQSASNGCVTDE 613
             KNVQSAS+GCVTDE
Sbjct:   595 KNVQSASDGCVTDE 608

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004160 "dihydroxy-acid dehydratase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB\|G4MKI2 MGG_05345 "Dihydroxy-acid dehydratase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

POMBASE\|SPAC17G8.06c SPAC17G8.06c "dihydroxy-acid dehydratase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000007677 AN6346 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000003777 ILV3 "Dihydroxyacid dehydratase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

CGD\|CAL0004803 ILV3 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000009745 AN4058 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|P65154 ilvD "Dihydroxy-acid dehydratase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0516 CHY_0516 "dihydroxy-acid dehydratase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_1853 BA_1853 "dihydroxy-acid dehydratase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NH32	ILVD_FRATT	4, ., 2, ., 1, ., 9	0.6295	0.8923	0.9927	yes	no
Q2YC67	ILVD_NITMU	4, ., 2, ., 1, ., 9	0.5099	0.9021	0.9928	yes	no
A4SWN4	ILVD_POLSQ	4, ., 2, ., 1, ., 9	0.4901	0.9053	0.9840	yes	no
Q82XY7	ILVD_NITEU	4, ., 2, ., 1, ., 9	0.5081	0.9021	0.9928	yes	no
Q14II4	ILVD_FRAT1	4, ., 2, ., 1, ., 9	0.6295	0.8923	0.9927	yes	no
A9WF68	ILVD_CHLAA	4, ., 2, ., 1, ., 9	0.5189	0.9021	0.9857	yes	no
Q12BW0	ILVD_POLSJ	4, ., 2, ., 1, ., 9	0.4839	0.9135	0.9929	yes	no
A5CWQ3	ILVD_VESOH	4, ., 2, ., 1, ., 9	0.5207	0.8955	0.9909	yes	no
Q8F219	ILVD_LEPIN	4, ., 2, ., 1, ., 9	0.5189	0.9037	0.9892	yes	no
B1WTN3	ILVD_CYAA5	4, ., 2, ., 1, ., 9	0.4954	0.9021	0.9857	yes	no
Q606D6	ILVD_METCA	4, ., 2, ., 1, ., 9	0.5479	0.9004	0.9822	yes	no
Q7UJ69	ILVD_RHOBA	4, ., 2, ., 1, ., 9	0.6852	0.9053	0.9788	yes	no
Q8DK13	ILVD_THEEB	4, ., 2, ., 1, ., 9	0.5215	0.9037	0.9892	yes	no
P39522	ILV3_YEAST	4, ., 2, ., 1, ., 9	0.5831	0.9168	0.9606	yes	no
A2RKQ9	ILVD_LACLM	4, ., 2, ., 1, ., 9	0.5698	0.9053	0.9736	yes	no
A6GWT7	ILVD_FLAPJ	4, ., 2, ., 1, ., 9	0.6072	0.9037	0.9928	yes	no
Q1IYZ8	ILVD_DEIGD	4, ., 2, ., 1, ., 9	0.4964	0.9168	0.9964	yes	no
B2SH83	ILVD_FRATM	4, ., 2, ., 1, ., 9	0.6360	0.9037	0.9892	yes	no
Q6F6Q0	ILVD2_ACIAD	4, ., 2, ., 1, ., 9	0.5259	0.9053	0.9893	yes	no
Q3ID04	ILVD2_PSEHT	4, ., 2, ., 1, ., 9	0.5391	0.9070	0.9946	yes	no
Q04RA5	ILVD_LEPBJ	4, ., 2, ., 1, ., 9	0.5171	0.9037	0.9892	yes	no
A0Q6R5	ILVD_FRATN	4, ., 2, ., 1, ., 9	0.6450	0.9037	0.9892	yes	no
Q1QU47	ILVD_CHRSD	4, ., 2, ., 1, ., 9	0.5424	0.8955	0.9631	yes	no
Q49UX2	ILVD2_STAS1	4, ., 2, ., 1, ., 9	0.5225	0.9021	0.9804	yes	no
A2CAC6	ILVD_PROM3	4, ., 2, ., 1, ., 9	0.4972	0.8988	0.9910	yes	no
B7JXB4	ILVD_CYAP8	4, ., 2, ., 1, ., 9	0.5081	0.9021	0.9857	yes	no
Q8EN63	ILVD_OCEIH	4, ., 2, ., 1, ., 9	0.5157	0.8760	0.9572	yes	no
B0CEN4	ILVD_ACAM1	4, ., 2, ., 1, ., 9	0.5081	0.9021	0.9857	yes	no
B0JJP7	ILVD_MICAN	4, ., 2, ., 1, ., 9	0.5017	0.9021	0.9857	yes	no
A1AWH6	ILVD_RUTMC	4, ., 2, ., 1, ., 9	0.5226	0.8955	0.9821	yes	no
B2J456	ILVD_NOSP7	4, ., 2, ., 1, ., 9	0.5045	0.9021	0.9857	yes	no
B1XVE9	ILVD_POLNS	4, ., 2, ., 1, ., 9	0.4955	0.9053	0.9857	yes	no
Q11AD1	ILVD_TRIEI	4, ., 2, ., 1, ., 9	0.5009	0.9021	0.9857	yes	no
Q02YY5	ILVD_LACLS	4, ., 2, ., 1, ., 9	0.5681	0.9053	0.9736	yes	no
B9LM83	ILVD_CHLSY	4, ., 2, ., 1, ., 9	0.5189	0.9021	0.9857	yes	no
Q0ADX6	ILVD_NITEC	4, ., 2, ., 1, ., 9	0.5045	0.9021	0.9928	yes	no
Q2JK60	ILVD_SYNJB	4, ., 2, ., 1, ., 9	0.5144	0.8972	0.9734	yes	no
Q11NN5	ILVD_CYTH3	4, ., 2, ., 1, ., 9	0.5809	0.9053	0.9875	yes	no
Q8YTE6	ILVD_NOSS1	4, ., 2, ., 1, ., 9	0.5243	0.9021	0.9822	yes	no
Q053H5	ILVD_LEPBL	4, ., 2, ., 1, ., 9	0.5171	0.9037	0.9892	yes	no
Q02139	ILVD_LACLA	4, ., 2, ., 1, ., 9	0.5698	0.9053	0.9736	yes	no
Q7VC95	ILVD_PROMA	4, ., 2, ., 1, ., 9	0.5009	0.8988	0.9874	yes	no
A9BAQ7	ILVD_PROM4	4, ., 2, ., 1, ., 9	0.4918	0.8955	0.9874	yes	no
Q72TC0	ILVD_LEPIC	4, ., 2, ., 1, ., 9	0.5207	0.9037	0.9892	yes	no
Q2JTX6	ILVD_SYNJA	4, ., 2, ., 1, ., 9	0.5125	0.9070	0.9840	yes	no
Q7TV16	ILVD_PROMM	4, ., 2, ., 1, ., 9	0.4990	0.8988	0.9910	yes	no
A4IYA1	ILVD_FRATW	4, ., 2, ., 1, ., 9	0.6342	0.9037	0.9892	yes	no
B0TZC0	ILVD_FRAP2	4, ., 2, ., 1, ., 9	0.6396	0.9037	0.9892	yes	no
Q10318	ILV3_SCHPO	4, ., 2, ., 1, ., 9	0.6399	0.9053	0.9280	yes	no
P74689	ILVD_SYNY3	4, ., 2, ., 1, ., 9	0.5099	0.9021	0.9857	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	0.976
4th Layer	4.2.1.9	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		613
PRK00911		552	PRK00911, PRK00911, dihydroxy-acid dehydratase; Pr	0.0
pfam00920		521	pfam00920, ILVD_EDD, Dehydratase family	0.0
COG0129		575	COG0129, IlvD, Dihydroxyacid dehydratase/phosphogl	0.0
TIGR00110		535	TIGR00110, ilvD, dihydroxy-acid dehydratase	0.0
PRK06131		571	PRK06131, PRK06131, dihydroxy-acid dehydratase; Va	1e-153
PRK12448		615	PRK12448, PRK12448, dihydroxy-acid dehydratase; Pr	1e-142
PRK13017		596	PRK13017, PRK13017, dihydroxy-acid dehydratase; Pr	1e-128
PRK13016		577	PRK13016, PRK13016, dihydroxy-acid dehydratase; Pr	1e-126
PRK08211		655	PRK08211, PRK08211, putative dehydratase; Provisio	4e-73
PRK09054		603	PRK09054, PRK09054, phosphogluconate dehydratase;	2e-72
TIGR01196		601	TIGR01196, edd, 6-phosphogluconate dehydratase	1e-69
TIGR03432		640	TIGR03432, yjhG_yagF, putative dehydratase, YjhG/Y	1e-68

>gnl\|CDD\|234861 PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

 Score =  932 bits (2412), Expect = 0.0
 Identities = 310/553 (56%), Positives = 394/553 (71%), Gaps = 3/553 (0%)

Query: 60  KYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRG 119
             S  +T+   +   +++L   GL++ D  KP +GI++ W E   CN+HL  L++AVK G
Sbjct: 1   MRSDMITKGVERAPHRSMLRATGLTDEDFDKPFIGIANSWNEITPCNIHLNELADAVKEG 60

Query: 120 VEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCD 179
           V  AG V F FNTIGVSD I+MG +GM +SL SR++IADSIETV++A W+D  ++IPGCD
Sbjct: 61  VRAAGGVPFEFNTIGVSDGIAMGHEGMKYSLVSREVIADSIETVVNAHWFDGLVAIPGCD 120

Query: 180 KNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNV 239
           KNMPG +MA  RLN P I VYGG I PG  +G    +VS F+  G Y +G IS+E+   +
Sbjct: 121 KNMPGMLMAAARLNVPSIFVYGGPILPGRLKGKDLTLVSVFEAVGAYAAGKISEEELKEI 180

Query: 240 VLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLR 299
             N+CPGAG+CGGM+TANTMA  IEA+GMSLP S +IPA D  + +  R AG+ ++ELL 
Sbjct: 181 ERNACPGAGSCGGMFTANTMACLIEALGMSLPGSGTIPAVDAERDELAREAGEAVVELLE 240

Query: 300 MDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFL 359
            D+KPRDI+T+++  NA+ + MALGGSTNAVLHL+AIA   G++L++D+F ++S   P L
Sbjct: 241 KDIKPRDILTREAFENAIAVDMALGGSTNAVLHLLAIAHEAGVDLTLDDFNRISKRTPHL 300

Query: 360 ADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQD 419
           ADLKPSGKYVMED+H+ GG PAV++ LL+ G L GDC+TVTGKTLAEN    P     QD
Sbjct: 301 ADLKPSGKYVMEDLHEAGGIPAVMKELLDAGLLHGDCLTVTGKTLAENLADAP--DPDQD 358

Query: 420 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDP 479
           +IRPL NPI  TG + +L+GNLAPEG+V KI G +   F+GPA VF+ EE  + AI    
Sbjct: 359 VIRPLDNPISPTGGLAILKGNLAPEGAVVKIAGVKPEMFTGPARVFDSEEEAMEAILAGK 418

Query: 480 MSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHV 539
           +   G VVVIR EGPKGGPGM EML PTSAI+GAGLG +VAL+TDGRFSGG+ G  VGHV
Sbjct: 419 IK-AGDVVVIRYEGPKGGPGMREMLAPTSAIVGAGLGDDVALITDGRFSGGTRGLCVGHV 477

Query: 540 CPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYI 599
            PEA  GGPI L+++GDII ID   R +DV ++DEE+  RR  W PP  K  RGVL KY 
Sbjct: 478 SPEAAVGGPIALVEDGDIITIDAPNRTLDVLVSDEELARRRAAWKPPEPKYKRGVLAKYA 537

Query: 600 KNVQSASNGCVTD 612
           K V SAS G VTD
Sbjct: 538 KLVSSASTGAVTD 550

Length = 552

>gnl\|CDD\|216192 pfam00920, ILVD_EDD, Dehydratase family	Back alignment and domain information

>gnl\|CDD\|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase	Back alignment and domain information

>gnl\|CDD\|235708 PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated	Back alignment and domain information

>gnl\|CDD\|237104 PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|237272 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|237271 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|236189 PRK08211, PRK08211, putative dehydratase; Provisional	Back alignment and domain information

>gnl\|CDD\|181628 PRK09054, PRK09054, phosphogluconate dehydratase; Validated	Back alignment and domain information

>gnl\|CDD\|130264 TIGR01196, edd, 6-phosphogluconate dehydratase	Back alignment and domain information

>gnl\|CDD\|163260 TIGR03432, yjhG_yagF, putative dehydratase, YjhG/YagF family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		613
PRK00911		552	dihydroxy-acid dehydratase; Provisional	100.0
TIGR00110		535	ilvD dihydroxy-acid dehydratase. This model genera	100.0
PRK12448		615	dihydroxy-acid dehydratase; Provisional	100.0
COG0129		575	IlvD Dihydroxyacid dehydratase/phosphogluconate de	100.0
PRK06131		571	dihydroxy-acid dehydratase; Validated	100.0
PRK13016		577	dihydroxy-acid dehydratase; Provisional	100.0
PF00920		521	ILVD_EDD: Dehydratase family; InterPro: IPR000581	100.0
PRK13017		596	dihydroxy-acid dehydratase; Provisional	100.0
TIGR01196		601	edd 6-phosphogluconate dehydratase. A close homolo	100.0
PRK09054		603	phosphogluconate dehydratase; Validated	100.0
TIGR03432		640	yjhG_yagF probable dehydratase, YjhG/YagF family.	100.0
PRK08211		655	putative dehydratase; Provisional	100.0
KOG2448		596	consensus Dihydroxy-acid dehydratase [Amino acid t	100.0
PRK11366		254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	93.05
PRK09372		159	ribonuclease activity regulator protein RraA; Prov	89.09
TIGR01935		150	NOT-MenG RraA famliy. This model was initially cla	85.44
PRK12487		163	ribonuclease activity regulator protein RraA; Revi	85.18
PRK08296		603	hypothetical protein; Provisional	82.3
PF06792		403	UPF0261: Uncharacterised protein family (UPF0261);	81.94
PRK14690		419	molybdopterin biosynthesis protein MoeA; Provision	81.49

>PRK00911 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

Probab=100.00  E-value=9.2e-215  Score=1728.80  Aligned_cols=550  Identities=56%  Similarity=0.955  Sum_probs=543.9

Q ss_pred             CCCCcCCCCCCchhhHHHHHhCCCCcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCccc
Q 007192           60 KYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAI  139 (613)
Q Consensus        60 ~~s~~~~~g~~~a~~ra~l~a~G~~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgi  139 (613)
                      +||+.+++|.++++|||+||++||++|||+||+|||+|||||++|||+||++|+++||+||+++||+||||+||++||||
T Consensus         1 ~rs~~~~~g~~~a~~ra~~~a~G~~~edl~kP~IgI~ns~se~~Pch~hl~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi   80 (552)
T PRK00911          1 MRSDMITKGVERAPHRSMLRATGLTDEDFDKPFIGIANSWNEITPCNIHLNELADAVKEGVRAAGGVPFEFNTIGVSDGI   80 (552)
T ss_pred             CCcccccCCcchHHHHHHHHHcCCChHHhcCCEEEEeccccccccchhhHHHHHHHHHHHHHHcCCEeEEeCCCcccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCcccceehH
Q 007192          140 SMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSA  219 (613)
Q Consensus       140 a~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~~~~~~  219 (613)
                      +|||+||+|||+|||+|||+||+|+++|+|||+|+|+|||||+|||||||+|+|||+||||||||+||+|+|+++++.++
T Consensus        81 ~~g~~GM~ysL~sReliA~~iE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm~~G~~~g~~~~~~~~  160 (552)
T PRK00911         81 AMGHEGMKYSLVSREVIADSIETVVNAHWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPILPGRLKGKDLTLVSV  160 (552)
T ss_pred             ccCcccceehhhhHHHHHHHHHHHhhCCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCcCCCCCCCccccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHh
Q 007192          220 FQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLR  299 (613)
Q Consensus       220 ~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~  299 (613)
                      ||++|+|++|+||+||+.++|+++|||+|+|+||||||||||++|||||+||||+++||++++|+++|+++|++||+|++
T Consensus       161 ~e~~g~~~~G~i~~ee~~~~e~~a~ps~GsC~~mgTANTM~~l~EaLGm~LPgsa~~pA~~~~r~~~a~~~G~~iv~lv~  240 (552)
T PRK00911        161 FEAVGAYAAGKISEEELKEIERNACPGAGSCGGMFTANTMACLIEALGMSLPGSGTIPAVDAERDELAREAGEAVVELLE  240 (552)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHhcCCCCCcccccchHHHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHHHHhhCCH
Q 007192          300 MDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGT  379 (613)
Q Consensus       300 ~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~dl~~aGGv  379 (613)
                      +|+|||||||++||+|||+++||+|||||++|||+|||+|+||+|||||||+||++||+|+|++|+|+|+|+|||+|||+
T Consensus       241 ~~~~prdIlT~~a~~NAi~v~~A~GGSTNavlHL~AIA~eaGi~l~l~dfd~is~~vP~l~~~~P~G~~~~~dl~~AGGv  320 (552)
T PRK00911        241 KDIKPRDILTREAFENAIAVDMALGGSTNAVLHLLAIAHEAGVDLTLDDFNRISKRTPHLADLKPSGKYVMEDLHEAGGI  320 (552)
T ss_pred             cCCChHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhcCCCCCHHHHHHHhccCCceeeecCCChHHHHHHHHcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCCCceEE
Q 007192          380 PAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFS  459 (613)
Q Consensus       380 paVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~~~f~  459 (613)
                      |+|||+|.+.||||+|++|||||||+|||++++.  +|++||||+++||+++|||+||+|||||+|||+|+||++..+|+
T Consensus       321 pavlk~L~~~glL~~d~~TVtG~Tl~e~l~~~~~--~d~~VIr~~~~P~~~~ggl~vL~GNLaP~GaViK~sa~~~~~~~  398 (552)
T PRK00911        321 PAVMKELLDAGLLHGDCLTVTGKTLAENLADAPD--PDQDVIRPLDNPISPTGGLAILKGNLAPEGAVVKIAGVKPEMFT  398 (552)
T ss_pred             HHHHHHHHHCCCcCCCCCCcCCCCHHHHHhcCCC--CCCCeECCccccCCCCCCEEEEecCCCCCceEEEccccCCccee
Confidence            9999999999999999999999999999999864  48999999999999999999999999999999999999888899


Q ss_pred             eeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCcceEEe
Q 007192          460 GPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHV  539 (613)
Q Consensus       460 GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~~IGHV  539 (613)
                      |||+|||||||+++||++++|++ |||||||||||||||||||||.+|++|+++||+++|||||||||||+|+|+|||||
T Consensus       399 GpA~VF~see~a~~ai~~g~I~~-gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSG~s~G~~igHv  477 (552)
T PRK00911        399 GPARVFDSEEEAMEAILAGKIKA-GDVVVIRYEGPKGGPGMREMLAPTSAIVGAGLGDDVALITDGRFSGGTRGLCVGHV  477 (552)
T ss_pred             eeEEEECCHHHHHHHHhcCCCCC-CeEEEEeCCCCCCCCChHHHhhHHHHHHhCCCCCceEEecccccCccccCCEEEEE
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCCCchHHHHHHHHhCCCccCCcccC
Q 007192          540 CPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD  612 (613)
Q Consensus       540 sPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~~~~G~l~~Y~~~V~sA~~GA~~~  612 (613)
                      |||||+|||||+|||||+|+||+++|+|+|+||||||++||++|++|++++.+|||++|+++|+||++||+++
T Consensus       478 sPEAa~GGpIalv~dGD~I~IDi~~r~l~l~v~~eel~~R~~~~~~~~~~~~~G~l~~Y~~~v~~A~~Gav~~  550 (552)
T PRK00911        478 SPEAAVGGPIALVEDGDIITIDAPNRTLDVLVSDEELARRRAAWKPPEPKYKRGVLAKYAKLVSSASTGAVTD  550 (552)
T ss_pred             ChhhcCCCcEEEEeCCCEEEEecCCCEEEEecCHHHHHHHHHhCCCCCCcCChHHHHHHHHhCcCHhcCCcCC
Confidence            9999999999999999999999999999999999999999999999988999999999999999999999986

>TIGR00110 ilvD dihydroxy-acid dehydratase	Back alignment and domain information

>PRK12448 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK06131 dihydroxy-acid dehydratase; Validated	Back alignment and domain information

>PRK13016 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4	Back alignment and domain information

>PRK13017 dihydroxy-acid dehydratase; Provisional	Back alignment and domain information

>TIGR01196 edd 6-phosphogluconate dehydratase	Back alignment and domain information

>PRK09054 phosphogluconate dehydratase; Validated	Back alignment and domain information

>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family	Back alignment and domain information

>PRK08211 putative dehydratase; Provisional	Back alignment and domain information

>KOG2448 consensus Dihydroxy-acid dehydratase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional	Back alignment and domain information

>PRK09372 ribonuclease activity regulator protein RraA; Provisional	Back alignment and domain information

>TIGR01935 NOT-MenG RraA famliy	Back alignment and domain information

>PRK12487 ribonuclease activity regulator protein RraA; Reviewed	Back alignment and domain information

>PRK08296 hypothetical protein; Provisional	Back alignment and domain information

>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised	Back alignment and domain information

>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		613
2gp4_A		628	Structure Of [fes]cluster-free Apo Form Of 6-phosph		3e-40

>pdb|2GP4|A Chain A, Structure Of [fes]cluster-free Apo Form Of 6-phosphogluconate Dehydratase From Shewanella Oneidensis Length = 628

Back alignment and structure

Iteration: 1

Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 135/515 (26%), Positives = 238/515 (46%), Gaps = 35/515 (6%) Query: 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTI-GVSDAISMGTKGM 146 ++K +GI + + + + + + +K+ +E G V + D ++ G G Sbjct: 83 LTKANIGIITAFNDXLSAHQPYETYPDLLKKACQEVGSVAQVAGGVPAXCDGVTQGQPGX 142 Query: 147 CFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIM-AMGRLNRPGIMVYGGTIK 205 SL SR++IA + +S +D + + CDK +PG ++ A+ + P + V G K Sbjct: 143 ELSLLSREVIAXATAVGLSHNXFDGALLLGICDKIVPGLLIGALSFGHLPXLFVPAGPXK 202 Query: 206 PGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEA 265 G ++ ++ G + Q + S AG C TAN+ +E Sbjct: 203 SG------IPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLXLEV 256 Query: 266 MGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPR---DIITKKSLRNAMVIVMA 322 G+ LP SS + +DPL+ + A K + L + + +++ +KS+ N +V ++A Sbjct: 257 XGLQLPGSSFVNPDDPLREALNKXAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLA 316 Query: 323 LGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAV 382 GGSTN H++A AR+ G+ ++ D+F ++SD VP LA + P+G + H GG + Sbjct: 317 TGGSTNLTXHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGXAFL 376 Query: 383 IRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQ-------------DIIRPLSNPIK 429 I+ LL+ G L D TV G L + P L +G+ +++ ++ P + Sbjct: 377 IKELLDAGLLHEDVNTVAGYGLRRYTQE-PKLLDGELRWVDGPTVSLDTEVLTSVATPFQ 435 Query: 430 KTGHIQVLRGNLAPEGSVAKITGKEGLY--FSGPALVFEGEESMIAAISEDPMSFKGKVV 487 G +++L+GNL +V K++ + + PA+V + + + A + VV Sbjct: 436 NNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVV 493 Query: 488 VIRXXXXXXXXXXXXXLTPTSAIMGA--GLGKEVALLTDGRXXXXXXXX-XXXXXCPEAQ 544 V LTP ++G+ G +VAL TDGR PEA Sbjct: 494 VKGQGPKANGXPELHKLTP---LLGSLQDKGFKVALXTDGRXSGASGKVPAAIHLTPEAI 550 Query: 545 DGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEER 579 DGG I +Q+GD+I +D + + ++D E+ R Sbjct: 551 DGGLIAKVQDGDLIRVDALTGELSLLVSDTELATR 585

PyMOL of 2gp4

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		613
2gp4_A		628	6-phosphogluconate dehydratase; N-terminal domain	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1 Length = 628	Back alignment and structure

 Score =  722 bits (1867), Expect = 0.0
 Identities = 154/596 (25%), Positives = 272/596 (45%), Gaps = 47/596 (7%)

Query: 54  SPPKLNKYSSRVTEPKSQGGSQAIL------HGV-------GLSEADMSKPQVGISSVWY 100
           S      Y + + + ++ G  ++ L      HG          +   ++K  +GI + + 
Sbjct: 36  SKASREAYLAALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFN 95

Query: 101 EGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTI-GVSDAISMGTKGMCFSLQSRDLIADS 159
           +  + +       + +K+  +E G V      +  + D ++ G  GM  SL SR++IA +
Sbjct: 96  DMLSAHQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMA 155

Query: 160 IETVMSAQWYDANISIPGCDKNMPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVS 218
               +S   +D  + +  CDK +PG ++      + P + V  G +K G        I  
Sbjct: 156 TAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQ 215

Query: 219 AFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPA 278
            F        G +   Q +     S   AG C    TAN+    +E MG+ LP SS +  
Sbjct: 216 QFA------QGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNP 269

Query: 279 EDPLKLDECRLAGKYLLELLRMDLKPR---DIITKKSLRNAMVIVMALGGSTNAVLHLIA 335
           +DPL+    ++A K +  L  +  +     +++ +KS+ N +V ++A GGSTN  +H++A
Sbjct: 270 DDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVA 329

Query: 336 IARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGD 395
            AR+ G+ ++ D+F ++SD VP LA + P+G   +   H  GG   +I+ LL+ G L  D
Sbjct: 330 AARAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHED 389

Query: 396 CMTVTGKTLAENAK------------TFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAP 443
             TV G  L    +              P +S   +++  ++ P +  G +++L+GNL  
Sbjct: 390 VNTVAGYGLRRYTQEPKLLDGELRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR 449

Query: 444 EGSVAKITG--KEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMP 501
             +V K++    +      PA+V + +  + A      +  +  VVV++G+GPK   GMP
Sbjct: 450 --AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALD-RDCVVVVKGQGPKAN-GMP 505

Query: 502 EMLTPTSAIMG-AGLGKEVALLTDGRFSGGSHGF-VVGHVCPEAQDGGPIGLIQNGDIIN 559
           E+   T  +      G +VAL+TDGR SG S       H+ PEA DGG I  +Q+GD+I 
Sbjct: 506 ELHKLTPLLGSLQDKGFKVALMTDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIR 565

Query: 560 IDVQKRRIDVQLTDEEMEERRRKWTPPPNK---VNRGVLYKYIKNVQSASNGCVTD 612
           +D     + + ++D E+  R        +    + R +      N+ S   G  + 
Sbjct: 566 VDALTGELSLLVSDTELATRTATEIDLRHSRYGMGRELFGVLRSNLSSPETGARST 621

PyMOL of 2gp4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		613
2gp4_A		628	6-phosphogluconate dehydratase; N-terminal domain	100.0
3rfq_A		185	Pterin-4-alpha-carbinolamine dehydratase MOAB2; st	82.03

>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1	Back alignment and structure

Probab=100.00  E-value=4.8e-196  Score=1592.52  Aligned_cols=534  Identities=28%  Similarity=0.478  Sum_probs=443.0

Q ss_pred             CCCCCchhhHHHHH---------hCCCCc----CcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEE-e
Q 007192           66 TEPKSQGGSQAILH---------GVGLSE----ADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRF-N  131 (613)
Q Consensus        66 ~~g~~~a~~ra~l~---------a~G~~d----ed~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef-~  131 (613)
                      ....++.++|+.|.         ++|.+|    .||+||+|||+|||||++|||+||++|++.||+||+++||+|+|| +
T Consensus        48 ~~~~~~~~~r~~l~c~n~ah~~aa~~~~dk~~~~~~~kP~IgI~ns~~d~~p~h~hl~~l~~~Vk~gv~~aGg~p~efg~  127 (628)
T 2gp4_A           48 NDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSAHQPYETYPDLLKKACQEVGSVAQVAGG  127 (628)
T ss_dssp             HHHHTC--------------------------------------------------------CCC---CCCCEEEEECC-
T ss_pred             HHHHhcCCCcccccchhHHHHHhcCCHhHHHHHhccCCCEEEEEeccccCcccchhHHHHHHHHHHHHHHcCCcceecCC
Confidence            33344556666666         778877    488999999999999999999999999999999999999999999 9


Q ss_pred             ccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhcc-CCCeEEEccCCCCCcccC
Q 007192          132 TIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRL-NRPGIMVYGGTIKPGHFQ  210 (613)
Q Consensus       132 tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRl-niPsi~v~gGpm~~G~~~  210 (613)
                      ||+|||||+|||+||+|||+|||+||||||+++++|+|||+|+|++||||+|||||||+|+ |||+||||||||++|+++
T Consensus       128 ~pav~DGit~G~~GM~ySL~SRelIAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~LMaA~r~~niPaIfV~gGpM~~G~~~  207 (628)
T 2gp4_A          128 VPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGPMKSGIPN  207 (628)
T ss_dssp             BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHHHHHHHHTTTTSCEEECCCCC-------
T ss_pred             CCcCCCccccCCcccccchhhHHHHHHHHHHHHhCCCCCeEEEeccCCCccHHHHHHHHhcCCCCEEEEeeCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999 799999999999999999


Q ss_pred             CcccceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHH
Q 007192          211 GHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLA  290 (613)
Q Consensus       211 g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~a  290 (613)
                      |+++++.      ++|++|+||+|||.++|+++|||||+|+||||||||||++|||||+||||+++||++++|.++|+++
T Consensus       208 g~~~~i~------~~~a~G~i~~eel~~~E~~acps~GsC~gmgTANTM~~l~EaLGl~LPGsa~ipA~~~~R~~la~~a  281 (628)
T 2gp4_A          208 KEKARIR------QQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNKMA  281 (628)
T ss_dssp             ------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCSCTTGGGSCTTCHHHHHHHHHH
T ss_pred             CceeehH------HHHHcCCCCHHHHHHHHHhcCCCCCccCCcChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            9988664      6899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC--CCc-ccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCCh
Q 007192          291 GKYLLELLRMD--LKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGK  367 (613)
Q Consensus       291 G~~iv~lv~~~--i~P-rdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~  367 (613)
                      |++||+|++++  +|| |||+|++||+|||+++||+|||||++|||+|||+|+||+|||||||+||++||+|||++|+|+
T Consensus       282 g~~iv~l~~~~~d~~P~~dIlT~~AfeNAi~v~~A~GGSTN~vLHL~AiA~eaGv~ltldDfd~is~~vP~L~~l~P~G~  361 (628)
T 2gp4_A          282 AKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGH  361 (628)
T ss_dssp             HHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCHHHHHHHHTTCCBCBCCGGGSS
T ss_pred             HHHHHHHHhcCCCCCChHHhCCHHHHHHHHHHHhccCccccHHHHHHHHHHHcCCCCCHHHHHHHhccCCCcceeCCCCh
Confidence            99999999955  999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccC------------CCCCCCCCccCCCCCCCCCCCCEE
Q 007192          368 YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTF------------PHLSEGQDIIRPLSNPIKKTGHIQ  435 (613)
Q Consensus       368 ~~m~dl~~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~------------~~~~~d~~VIrp~~~P~~~~Ggl~  435 (613)
                      |+|+|||+|||+|+|||+|+++||||+||+|||||||+||++++            +..+.|++||||+++||+++|||+
T Consensus       362 ~~medf~~AGGvpavm~eL~~~GlLh~D~~TVtGktl~e~l~~~~~~~~~~~~~~~~~~~~d~~VIrp~~~P~~~~GGl~  441 (628)
T 2gp4_A          362 ADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTVSLDTEVLTSVATPFQNNGGLK  441 (628)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSSCSCTTTBCCSSSCSBSSCCEE
T ss_pred             hHHHHHHHccCHHHHHHHHHHCCCcCCCCCeeCCCCHHHHHhCccccccccccccCCCCCCCCCeeCChhhcCCCCCCEE
Confidence            99999999999999999999999999999999999999999873            222368999999999999999999


Q ss_pred             EEeccCCCCCeEEccccCC--CceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHH--
Q 007192          436 VLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIM--  511 (613)
Q Consensus       436 vL~GNLAP~GAVvK~sa~~--~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~--  511 (613)
                      ||+||||  |||+|+||++  .++|+|||||||||||+++||++|+|++ |||||||||||||+ ||||||.+|++|.  
T Consensus       442 vL~GNLa--gaViK~sav~~~~~~~~GpArVFdsee~a~~ai~~g~i~~-gdVvVIRyeGPkG~-GMpEml~~T~~l~~L  517 (628)
T 2gp4_A          442 LLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDR-DCVVVVKGQGPKAN-GMPELHKLTPLLGSL  517 (628)
T ss_dssp             EEEETTE--EEEEECTTSCGGGSEEEEEEEEESSGGGHHHHHHTTTTSS-SEEEEECSCSHHHH-SCCBCCSSHHHHHHH
T ss_pred             EEecccc--CEEeEccccCCccceEEeeeEEeCCHHHHHHHHhCCCCCC-CeEEEEeCCCCCCC-CchhhhhhhhhHHHH
Confidence            9999998  7999999975  4569999999999999999999999999 99999999999987 9999999997655  


Q ss_pred             -hCCCCCeeEEEcCCCCCCCCCC-cceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCC-
Q 007192          512 -GAGLGKEVALLTDGRFSGGSHG-FVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPN-  588 (613)
Q Consensus       512 -g~Gl~~~VALITDGRfSGas~G-~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~-  588 (613)
                       ++|+  +|||||||||||+|+| +|||||||||++|||||+|||||+|+||+++|+|+|+||||||++||++|+||++ 
T Consensus       518 ~g~Gl--~VALITDGRfSGaS~gg~~igHVsPEAa~GGpIalV~dGD~I~IDi~~r~l~l~v~deEla~R~~~~~~~~~~  595 (628)
T 2gp4_A          518 QDKGF--KVALMTDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHS  595 (628)
T ss_dssp             HHTTC--CEEEEESSBCSSSCCSSCEEEEEESCGGGTCGGGTCCTTCEEEEETTTTEEEECSCHHHHHHCCCCCCCCGGG
T ss_pred             HhCCC--eEEEecccCcCCccCCCCeEEEEChhhhcCCcEEEEeCCCEEEEecCCCEEEEeeCHHHHHHhHhcCCCCccc
Confidence             9998  6999999999999995 9999999999999999999999999999999999999999999999999998766 


Q ss_pred             --CCchHHHHHHHHhCCCccCCccc
Q 007192          589 --KVNRGVLYKYIKNVQSASNGCVT  611 (613)
Q Consensus       589 --~~~~G~l~~Y~~~V~sA~~GA~~  611 (613)
                        ++++|||++|+++|+||++||++
T Consensus       596 ~~~~~~g~l~~y~~~V~sA~~GA~~  620 (628)
T 2gp4_A          596 RYGMGRELFGVLRSNLSSPETGARS  620 (628)
T ss_dssp             SSSTTGGGSHHHHHTCCCGGGTSCC
T ss_pred             ccCccHHHHHHHHHhCcCHhhCCee
Confidence              78899999999999999999987

PyMOL of 2gp4

>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		613
d2gp4a2		418	d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase	1e-110
d2gp4a1		190	c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase	3e-47

>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} Length = 418	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: IlvD/EDD N-terminal domain-like
superfamily: IlvD/EDD N-terminal domain-like
family: lvD/EDD N-terminal domain-like
domain: 6-phosphogluconate dehydratase EDD
species: Shewanella oneidensis [TaxId: 70863]

 Score =  334 bits (857), Expect = e-110
 Identities = 99/409 (24%), Positives = 181/409 (44%), Gaps = 36/409 (8%)

Query: 54  SPPKLNKYSSRVTEPKSQGGSQAIL------HGV---GLSE----ADMSKPQVGISSVWY 100
           S      Y + + + ++ G  ++ L      HG       +      ++K  +GI + + 
Sbjct: 16  SKASREAYLAALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFN 75

Query: 101 EGNTCNMHLLRLSEAVKRGVEE-AGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADS 159
           +  + +       + +K+  +E   +         + D ++ G  GM  SL SR++IA +
Sbjct: 76  DMLSAHQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMA 135

Query: 160 IETVMSAQWYDANISIPGCDKNMPGTIM-AMGRLNRPGIMVYGGTIKPGHFQGHTYDIVS 218
               +S   +D  + +  CDK +PG ++ A+   + P + V  G +K G        I  
Sbjct: 136 TAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQ 195

Query: 219 AFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPA 278
            F          +   Q +     S   AG C    TAN+    +E MG+ LP SS +  
Sbjct: 196 QFAQG------KVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNP 249

Query: 279 EDPLKLDECRLAGKYLLELLRM---DLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIA 335
           +DPL+    ++A K +  L  +        +++ +KS+ N +V ++A GGSTN  +H++A
Sbjct: 250 DDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVA 309

Query: 336 IARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGD 395
            AR+ G+ ++ D+F ++SD VP LA + P+G   +   H  GG   +I+ LL+ G L  D
Sbjct: 310 AARAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHED 369

Query: 396 CMTVTGKTLAENAKT------------FPHLSEGQDIIRPLSNPIKKTG 432
             TV G  L    +              P +S   +++  ++ P +  G
Sbjct: 370 VNTVAGYGLRRYTQEPKLLDGELRWVDGPTVSLDTEVLTSVATPFQNNG 418

PyMOL of d2gp4a2

>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} Length = 190	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		613
d2gp4a2		418	6-phosphogluconate dehydratase EDD {Shewanella one	100.0
d2gp4a1		190	6-phosphogluconate dehydratase EDD {Shewanella one	100.0
d2hi6a1		132	Hypothetical protein AF0055 {Archaeoglobus fulgidu	88.23

>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IlvD/EDD N-terminal domain-like
superfamily: IlvD/EDD N-terminal domain-like
family: lvD/EDD N-terminal domain-like
domain: 6-phosphogluconate dehydratase EDD
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=3.2e-129  Score=1029.75  Aligned_cols=363  Identities=26%  Similarity=0.439  Sum_probs=277.5

Q ss_pred             cCCCCCCchhhHHHHH---------hCCCCcC----cCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEE
Q 007192           64 RVTEPKSQGGSQAILH---------GVGLSEA----DMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRF  130 (613)
Q Consensus        64 ~~~~g~~~a~~ra~l~---------a~G~~de----d~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef  130 (613)
                      .++++.++.++|++|+         ++|++|+    ||+||+|||+|||||++|||+||++|++.||+||+++||+|++|
T Consensus        26 ~i~~~~~~~~~r~~l~c~nlAh~~aa~~~~dk~~l~d~~kP~IGIvns~~d~~pch~hl~~l~~~vK~gv~~~gg~~~~~  105 (418)
T d2gp4a2          26 ALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSAHQPYETYPDLLKKACQEVGSVAQVA  105 (418)
T ss_dssp             HHHHHHTC--------------------------------------------------------CCC---CCCCEEEEEC
T ss_pred             HHHHHHhcCCCccccccchHHHHHHhcCcchhhhHhhcCCCeEEEEeccccccccchhHHHHHHHHHHHHHHhCCcceee
Confidence            4677788899999986         9999996    99999999999999999999999999999999999999999875


Q ss_pred             -eccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccC-CCeEEEccCCCCCcc
Q 007192          131 -NTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLN-RPGIMVYGGTIKPGH  208 (613)
Q Consensus       131 -~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRln-iPsi~v~gGpm~~G~  208 (613)
                       +||++||||+|||+||+|||+|||+||||||+++++|+|||+|+|+|||||+|||||||+|+| +|+||||||||+||.
T Consensus       106 ~~~p~~cDGit~G~~GM~~SL~SRelIA~siE~~~~~~~~Dg~V~l~~CDK~vPG~lMaa~r~n~lPsI~v~gGpm~~G~  185 (418)
T d2gp4a2         106 GGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGPMKSGI  185 (418)
T ss_dssp             C-BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHHHHHHHHTTTTSCEEECCCCC-----
T ss_pred             CccccccccccCCccchhhhhhhhhHHHHHHHHHhccCccccEEEEccCCCCChHHHHHHHhccCCCEEEEccCCcCCCc
Confidence             678999999999999999999999999999999999999999999999999999999999996 999999999999999


Q ss_pred             cCCcccceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHH
Q 007192          209 FQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECR  288 (613)
Q Consensus       209 ~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~  288 (613)
                      ++|+++++.+      +|++|+|+++||.++|+++|||+|+|+||||||||||++|+|||+||||+++||++++|.++++
T Consensus       186 ~~~~~~~~~~------~~~~G~i~~~el~~~E~~a~p~~GtC~~mgTANTm~~l~EalGl~LPGsa~vpa~~~~r~~~a~  259 (418)
T d2gp4a2         186 PNKEKARIRQ------QFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNK  259 (418)
T ss_dssp             --------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCSCTTGGGSCTTCHHHHHHHH
T ss_pred             cCCCCceEee------ccccccccHHHHHHHHHhccCCCCccchhHHHHHHHHHHHHhccCcccccCCCCchHHHHHHHH
Confidence            9999876654      7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh---CCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCC
Q 007192          289 LAGKYLLELLR---MDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPS  365 (613)
Q Consensus       289 ~aG~~iv~lv~---~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~  365 (613)
                      ++|++++++++   ++++||||||++||+|||++++|+|||||++|||+|||+|+||+|||+|||+||++||+|+||+|+
T Consensus       260 ~ag~~~~~~~~~~~~~~~~~dIlt~~a~~NAi~~~~A~GGSTNavlHL~AIA~eaGi~l~l~dfd~is~~~P~L~~l~P~  339 (418)
T d2gp4a2         260 MAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPN  339 (418)
T ss_dssp             HHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCHHHHHHHHTTCCBCBCCGGG
T ss_pred             HHHHHHHHHHHhhccCCCHHHhhCHHHHHhhhhHHhcccchHhhhcccHHHHhhcCCCCCHHHHHHHhCCCCeeeeeccC
Confidence            99999997765   556789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHhhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccCC------------CCCCCCCccCCCCCCCCCCC
Q 007192          366 GKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFP------------HLSEGQDIIRPLSNPIKKTG  432 (613)
Q Consensus       366 G~~~m~dl~~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~------------~~~~d~~VIrp~~~P~~~~G  432 (613)
                      |+|+|+|||+|||+|+|||+|+++||||+||+|||||||+||+++.+            ..+.|++||||+++||+++|
T Consensus       340 G~~~m~d~~~AGGvp~v~k~L~~~glLh~D~~TVtG~tl~e~l~~~~~~~~~i~~~~~p~~~~d~~VIrp~~~P~~~~G  418 (418)
T d2gp4a2         340 GHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTVSLDTEVLTSVATPFQNNG  418 (418)
T ss_dssp             SSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSSCSCTTTBCCSSSCSBSSC
T ss_pred             CcchHHHHHhhcCHHHHHHHHHHCCCccCCCCCcCCcCHHHHHcCCCccCCceeeccCCCCCCCCCEeCccccCCCCCC
Confidence            99999999999999999999999999999999999999999998642            22458999999999999987

PyMOL of d2gp4a2

>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]}	Back information, alignment and structure

>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure