Citrus Sinensis ID: 007203

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQADEPSTSSNLS
cEEEEEEEcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHEEEEEcccHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccEEEEEEccccccHHHHHHHHccccccccccHHHHHHHHcccccccccccccccHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cEEEEEEEccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHEHHHHHHHHHcHHHHEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccEEEccccccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEcccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccccHHHccccc
MFAYISValgdtprfssFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNAlvevgpsiTLASLSEFLAFAvgsfipmpacRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEqqivlprdsylqgyfdntteylrvgpplYFVVKDynyssesrhtnqlcsisqcdsNSLLNEIsrassipelsyiakpaaswlddflvwtspeafgccrkfvngtycppddqppccspdeepcgvngvckdcttcfrhsdlvnnrpsteQFREKLPWFlnalpsadcakgghgaystsvdlngyesgiiqasefrtfhtplnkqgdyVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVilslfgppsrhiiiekqqadepstssnls
MFAYISvalgdtprfSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIekqqadepstssnls
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMfaalavlldfflQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYcppddqppccspdeepcGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAiilvvlvmividllGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQADEPSTSSNLS
**AYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDD**PCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHG*********LSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIII***************
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM**VLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFG***********************
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYS********LCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHG**********STMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEK*************
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSR*******************
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQADEPSTSSNLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query613 2.2.26 [Sep-21-2011]
O356041277 Niemann-Pick C1 protein O yes no 0.955 0.458 0.394 1e-128
P569411277 Niemann-Pick C1 protein O yes no 0.934 0.448 0.406 1e-127
O151181278 Niemann-Pick C1 protein O yes no 0.938 0.449 0.395 1e-126
Q6T3U31331 Niemann-Pick C1-like prot no no 0.962 0.443 0.370 1e-109
Q9UHC91359 Niemann-Pick C1-like prot no no 0.960 0.433 0.374 1e-100
Q6T3U41333 Niemann-Pick C1-like prot no no 0.959 0.441 0.367 2e-99
Q122001170 Niemann-Pick type C-relat yes no 0.840 0.440 0.343 1e-85
Q191271383 Niemann-Pick C1 protein h yes no 0.965 0.428 0.255 1e-55
P343891274 Niemann-Pick C1 protein h no no 0.915 0.440 0.256 2e-45
Q90693 1442 Protein patched homolog 1 no no 0.345 0.147 0.383 2e-29
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2 Back     alignment and function desciption
 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/659 (39%), Positives = 394/659 (59%), Gaps = 73/659 (11%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MF YIS+ALG     S   V SK+ LG++G+++V+ SV  S+G FS +G+  TLI++EVI
Sbjct: 631  MFLYISLALGHIQSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVI 690

Query: 61   PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
            PFLVLAVGVDN+ ILV   +R     E  L+ ++   L EV P++ L+S SE  AF  G+
Sbjct: 691  PFLVLAVGVDNIFILVQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGA 750

Query: 119  FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------------ 154
               MPA   FS+FA +AVL+DF LQ+T FV+L+ +                         
Sbjct: 751  LSSMPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNHLDILCCVRGADDGQGS 810

Query: 155  ---------------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
                           AP+L    ++ +VV+VF+     S+A+  +++ GL+Q + +P DS
Sbjct: 811  HASESYLFRFFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVAVVNKVDIGLDQSLSMPNDS 870

Query: 200  YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
            Y+  YF +  +YL  GPP+YFV+++ YNYSS  +  N +C    CD++SL+ +I  A+ +
Sbjct: 871  YVIDYFKSLAQYLHSGPPVYFVLEEGYNYSSR-KGQNMVCGGMGCDNDSLVQQIFNAAEL 929

Query: 259  PELSYIAKPAASWLDDFLVWTSPEAFGCCRKF-VNGTYCPPDDQPPCCSPDEEPCGVNGV 317
               + +    +SW+DD+  W SP++  CCR + V   +C      P              
Sbjct: 930  DTYTRVGFAPSSWIDDYFDWVSPQS-SCCRLYNVTHQFCNASVMDP-------------- 974

Query: 318  CKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGI 377
               C  C   +     RP  ++F + LP FL+  P+  C KGGH AY ++V++ G +   
Sbjct: 975  --TCVRCRPLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVG-DDTY 1031

Query: 378  IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK-----INIFPYSVFYIFFEQYL 432
            I A+ F T+HT L    DY ++++ AR  +S +++T++       +FPYSVFY+F+EQYL
Sbjct: 1032 IGATYFMTYHTILKTSADYTDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYL 1091

Query: 433  DIWRVALINIAVALGAIFIVCL-LMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAV 491
             I    + N++V+LG+IF+V L ++   LWS+ I+ + + MI++++ GVM + GI LNAV
Sbjct: 1092 TIIDDTIFNLSVSLGSIFLVTLVVLGCELWSAVIMCITIAMILVNMFGVMWLWGISLNAV 1151

Query: 492  SVVNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIV 550
            S+VNL+MS GI+VEFC HI  AF +S  G+R  R+++AL+ MG+SVFSGITLTK  G++V
Sbjct: 1152 SLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSGITLTKFGGIVV 1211

Query: 551  LCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP----PSRHIIIEKQQADE 605
            L FA+S+IF ++YF+MYLA+V++G  HGL+FLPV+LS  GP      RH   E+ +  E
Sbjct: 1212 LAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKRHTTYERYRGTE 1270
Involved in the intracellular trafficking of cholesterol. May play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural and functional integrity of nerve terminals.
Mus musculus (taxid: 10090)
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1 Back     alignment and function description
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2 Back     alignment and function description
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1 Back     alignment and function description
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1 PE=1 SV=2 Back     alignment and function description
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2 PE=3 SV=2 Back     alignment and function description
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query613
297744484 2090 unnamed protein product [Vitis vinifera] 0.993 0.291 0.798 0.0
359474967 1234 PREDICTED: niemann-Pick C1 protein [Viti 0.993 0.493 0.798 0.0
224102795 1223 cholesterol transport protein [Populus t 0.980 0.491 0.796 0.0
359491908 1309 PREDICTED: niemann-Pick C1 protein-like 0.996 0.466 0.765 0.0
297745553 1242 unnamed protein product [Vitis vinifera] 0.996 0.491 0.765 0.0
255539230 1235 hedgehog receptor, putative [Ricinus com 0.978 0.485 0.761 0.0
224086046 1274 cholesterol transport protein [Populus t 0.970 0.467 0.737 0.0
449455603 1244 PREDICTED: niemann-Pick C1 protein-like 0.995 0.490 0.737 0.0
334187266 1273 Patched family protein [Arabidopsis thal 0.993 0.478 0.771 0.0
334187268 1297 Patched family protein [Arabidopsis thal 0.993 0.469 0.771 0.0
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/655 (79%), Positives = 568/655 (86%), Gaps = 46/655 (7%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MFAYIS+ LGD  R SSFYVSSKVLLGLSGVI+VMLSVLGSVGFFSAIGVKSTLIIMEVI
Sbjct: 1434 MFAYISITLGDVSRLSSFYVSSKVLLGLSGVIVVMLSVLGSVGFFSAIGVKSTLIIMEVI 1493

Query: 61   PFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFI 120
            PFLVLAVGVDNMCILV+AVKRQ ++L LE RISNALVEVGPSITLASLSE LAFAVGSFI
Sbjct: 1494 PFLVLAVGVDNMCILVHAVKRQSLDLPLEGRISNALVEVGPSITLASLSEVLAFAVGSFI 1553

Query: 121  PMPACRVFSMFAALAVLLDFFLQVTAFVALI----------------------------- 151
            PMPACRVFSMFAALAVLLDF LQVTAFVALI                             
Sbjct: 1554 PMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDFMRAEDNRIDCFPCIKIPSSSVESDE 1613

Query: 152  ----------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVL 195
                            EVHAPILG+WGVK+ V++ F AFT+ASIAL TRIE GLEQQIVL
Sbjct: 1614 GINQRKPGGLLAWYMQEVHAPILGIWGVKIFVIAAFFAFTLASIALCTRIEPGLEQQIVL 1673

Query: 196  PRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRA 255
            PRDSYLQGYF+N +EYLR+GPPLYFVVKDYNYSS+SRHTNQLCSI+QCDSNSLLNEISRA
Sbjct: 1674 PRDSYLQGYFNNVSEYLRIGPPLYFVVKDYNYSSDSRHTNQLCSINQCDSNSLLNEISRA 1733

Query: 256  SSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVN 315
            S +PE SYIAKPAASWLDDFLVW SPEAFGCCRKFVNG+YCPPDDQPPCCSPDE  C + 
Sbjct: 1734 SLVPESSYIAKPAASWLDDFLVWMSPEAFGCCRKFVNGSYCPPDDQPPCCSPDEGYCDLG 1793

Query: 316  GVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYES 375
            GVCKDCTTCFRHSDL + RPSTEQFREKLPWFLNALPSADCAKGGHGAY++SVDLNGYES
Sbjct: 1794 GVCKDCTTCFRHSDLNSGRPSTEQFREKLPWFLNALPSADCAKGGHGAYTSSVDLNGYES 1853

Query: 376  GIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIW 435
             +IQASEFRT+HTPLNKQ DYVNS+RAAREFSSR+SD LKI IFPYSVFY+FFEQYLDIW
Sbjct: 1854 SVIQASEFRTYHTPLNKQVDYVNSMRAAREFSSRVSDALKIQIFPYSVFYMFFEQYLDIW 1913

Query: 436  RVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVN 495
            R ALINIA+ALGA+FIVCL++TSS+WSSAIIL+VL MI++DL+GVMA L IQLNAVSVVN
Sbjct: 1914 RTALINIAIALGAVFIVCLVITSSVWSSAIILLVLAMIIVDLMGVMACLDIQLNAVSVVN 1973

Query: 496  LIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFAR 555
            LIMSIGIAVEFCVHI HAF VS G+RNQR++ AL TMGASVFSGITLTKLVGVIVLCF++
Sbjct: 1974 LIMSIGIAVEFCVHISHAFSVSQGDRNQRAKLALGTMGASVFSGITLTKLVGVIVLCFSK 2033

Query: 556  SEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQADEPSTSS 610
            SEIFVVYYFQMYLALV+IGFLHGLVFLPVILS+ GPPS H+ I KQQ DEPS+S+
Sbjct: 2034 SEIFVVYYFQMYLALVLIGFLHGLVFLPVILSMIGPPSMHVPI-KQQEDEPSSSA 2087

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474967|ref|XP_002279611.2| PREDICTED: niemann-Pick C1 protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102795|ref|XP_002312804.1| cholesterol transport protein [Populus trichocarpa] gi|222849212|gb|EEE86759.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359491908|ref|XP_002272383.2| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745553|emb|CBI40718.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539230|ref|XP_002510680.1| hedgehog receptor, putative [Ricinus communis] gi|223551381|gb|EEF52867.1| hedgehog receptor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224086046|ref|XP_002307793.1| cholesterol transport protein [Populus trichocarpa] gi|222857242|gb|EEE94789.1| cholesterol transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455603|ref|XP_004145542.1| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334187266|ref|NP_195548.6| Patched family protein [Arabidopsis thaliana] gi|332661516|gb|AEE86916.1| Patched family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334187268|ref|NP_001190953.1| Patched family protein [Arabidopsis thaliana] gi|332661517|gb|AEE86917.1| Patched family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query613
TAIR|locus:20358781272 AT1G42470 [Arabidopsis thalian 0.626 0.301 0.663 5.3e-197
UNIPROTKB|G3V7K51278 Cdig2 "RCG41239" [Rattus norve 0.706 0.338 0.401 5.8e-114
UNIPROTKB|F1NQT41278 NPC1 "Uncharacterized protein" 0.694 0.333 0.389 8.3e-114
MGI|MGI:10977121277 Npc1 "Niemann Pick type C1" [M 0.701 0.336 0.396 8.7e-113
UNIPROTKB|F1SBB51277 NPC1 "Niemann-Pick C1 protein" 0.685 0.328 0.401 2.7e-112
UNIPROTKB|P569411277 NPC1 "Niemann-Pick C1 protein" 0.685 0.328 0.401 2.7e-112
UNIPROTKB|F1PB501277 NPC1 "Uncharacterized protein" 0.681 0.327 0.402 4.4e-112
UNIPROTKB|B4DET3960 NPC1 "Niemann-Pick C1 protein" 0.685 0.437 0.395 4.9e-112
UNIPROTKB|K7EQ23971 NPC1 "Niemann-Pick C1 protein" 0.685 0.432 0.395 4.9e-112
UNIPROTKB|Q8MKD81276 Q8MKD8 "Niemann-Pick C1" [Feli 0.683 0.328 0.392 6.5e-111
TAIR|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1368 (486.6 bits), Expect = 5.3e-197, Sum P(2) = 5.3e-197
 Identities = 256/386 (66%), Positives = 308/386 (79%)

Query:   152 EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEY 211
             EVHAP+L  W VK+VV++ F    +A IALSTRIE GLEQQIVLP+DSYLQGYF+N + Y
Sbjct:   802 EVHAPVLSHWIVKIVVIAFFFGLAMAGIALSTRIEPGLEQQIVLPQDSYLQGYFNNISTY 861

Query:   212 LRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASW 271
             LR+GPPLYFV+K+YNYSSESRHTNQLCSI++C+ NSLLNEI+RAS  PELSYIAKPAASW
Sbjct:   862 LRIGPPLYFVLKNYNYSSESRHTNQLCSINKCNPNSLLNEIARASLTPELSYIAKPAASW 921

Query:   272 LDDFLVWTSPEAFGCCRKFVNGTYXXXXXXXXXXXXXXXXXGVNGVCKDCTTCFRHSDLV 331
             LDDFLVW SPEAFGCCRKF NGT+                 G++ VCKDCTTCFRH+DL 
Sbjct:   922 LDDFLVWLSPEAFGCCRKFTNGTFCPPDDQPPCCPPGQTSCGLSEVCKDCTTCFRHADLS 981

Query:   332 NNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLN 391
             ++RPST QF+EKLPWFLNALPSADCAKGGHGAYS+SVDL GY +GIIQAS FRT+HTPLN
Sbjct:   982 SDRPSTTQFKEKLPWFLNALPSADCAKGGHGAYSSSVDLQGYANGIIQASSFRTYHTPLN 1041

Query:   392 KQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFI 451
             KQ D+VNS+RAA+EFS+++S +LK+ I+PYSVFY+FFEQYLDIW+ ALIN+++A+ A+F+
Sbjct:  1042 KQVDFVNSMRAAQEFSAKVSRSLKMEIYPYSVFYMFFEQYLDIWKTALINLSIAIAAVFV 1101

Query:   452 VCLLMTSSLWSSAXXXXXXXXXXXXXXGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511
             VCL++T S WSSA              GVMA+  IQLNA+SVVNLIMS+GIAVEFCVHI 
Sbjct:  1102 VCLIITCSFWSSAIILLVIAMIIIDLLGVMAVFHIQLNALSVVNLIMSVGIAVEFCVHIT 1161

Query:   512 HAFLVSHGNRNQRSQKALSTMGASVF 537
             HAF  SH  +    ++ +   G+  F
Sbjct:  1162 HAF--SHWGQKPSDERGVGWDGSFSF 1185
GO:0008158 "hedgehog receptor activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|G3V7K5 Cdig2 "RCG41239" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQT4 NPC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1097712 Npc1 "Niemann Pick type C1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBB5 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P56941 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB50 NPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DET3 NPC1 "Niemann-Pick C1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7EQ23 NPC1 "Niemann-Pick C1 protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8MKD8 Q8MKD8 "Niemann-Pick C1" [Felis catus (taxid:9685)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query613
TIGR009171204 TIGR00917, 2A060601, Niemann-Pick C type protein f 0.0
pfam12349153 pfam12349, Sterol-sensing, Sterol-sensing domain o 3e-49
TIGR009181145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 6e-40
pfam02460801 pfam02460, Patched, Patched family 7e-29
pfam02460801 pfam02460, Patched, Patched family 3e-28
TIGR00918 1145 TIGR00918, 2A060602, The Eukaryotic (Putative) Ste 2e-17
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 3e-10
COG1033 727 COG1033, COG1033, Predicted exporters of the RND s 2e-09
TIGR03480862 TIGR03480, HpnN, hopanoid biosynthesis associated 3e-07
TIGR00921 719 TIGR00921, 2A067, The (Largely Archaeal Putative) 2e-06
COG1033727 COG1033, COG1033, Predicted exporters of the RND s 4e-05
pfam03176332 pfam03176, MMPL, MMPL family 8e-05
TIGR03480 862 TIGR03480, HpnN, hopanoid biosynthesis associated 1e-04
TIGR00833 910 TIGR00833, actII, Transport protein 1e-04
COG0841 1009 COG0841, AcrB, Cation/multidrug efflux pump [Defen 1e-04
TIGR00921719 TIGR00921, 2A067, The (Largely Archaeal Putative) 5e-04
TIGR00920 889 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co 0.004
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family Back     alignment and domain information 
 Score =  727 bits (1877), Expect = 0.0
 Identities = 339/651 (52%), Positives = 441/651 (67%), Gaps = 89/651 (13%)

Query: 1    MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
            MFAYIS++LG + RF S ++ SKVLLG+SGV++V+ SV+GSVG FS IG+K+TLIIMEVI
Sbjct: 582  MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVI 641

Query: 61   PFLVLAVGVDNMCILVNA------VKRQP-----MELVLETRISNALVEVGPSITLASLS 109
            PFLVLAVGVDN+ ILV          R+       EL LE ++  AL EVGPSITLASLS
Sbjct: 642  PFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLS 701

Query: 110  EFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------------------ 151
            E LAF +G+   MPA R FS+FA LAV +DF LQ+TAFVAL+                  
Sbjct: 702  ESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCI 761

Query: 152  --------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI 185
                                      EV+AP L  W VK+VV++ F    +  IAL+TRI
Sbjct: 762  KGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821

Query: 186  EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCD 244
            + GL+QQ+ LP+DSYLQ YF + T  L VGPP+YFV+K DYNY+  S   N++C+   C+
Sbjct: 822  DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTD-SESQNKVCTGGGCN 880

Query: 245  SNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPC 304
             +S++N  +       L+YIAKPA+SWLDD+  W SP++  CCRKF NGT+C   D    
Sbjct: 881  KDSIVNVFN------NLTYIAKPASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPD---- 930

Query: 305  CSPDEEPCGVNGVCKDCTTCFRHSDLVNN---RPSTEQFREKLPWFLNALPSADCAKGGH 361
                              +CFR +DL +N   RPST QF+E LP+FLN  PSADCAKGGH
Sbjct: 931  -----------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGH 973

Query: 362  GAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPY 421
             AYS++VDL G+ + IIQAS F T+HTPLN Q D++N+LRAARE S+ ++ +LK+ +FPY
Sbjct: 974  AAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPY 1033

Query: 422  SVFYIFFEQYLDIWRVALINIAVALGAIFIVCL-LMTSSLWSSAIILVVLVMIVIDLLGV 480
            SVFY+FFEQYL IW  ALIN+ ++LGAIFIV L L+  +  S+  +++ + MIV++L+G+
Sbjct: 1034 SVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGI 1093

Query: 481  MAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSG 539
            M +  I LNAVSVVNL+M+ GI++EFC HI   F  S H +RN R+++AL  MG+SVFSG
Sbjct: 1094 MHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSG 1153

Query: 540  ITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFG 590
            ITLTKLVGV+VL F++SEIF VYYF+MYLA+V++G LHGLVFLPV+LS  G
Sbjct: 1154 ITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204
>gnl|CDD|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|217050 pfam02460, Patched, Patched family Back     alignment and domain information
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|217407 pfam03176, MMPL, MMPL family Back     alignment and domain information
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>gnl|CDD|129913 TIGR00833, actII, Transport protein Back     alignment and domain information
>gnl|CDD|223911 COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 613
TIGR009171204 2A060601 Niemann-Pick C type protein family. The m 100.0
TIGR009181145 2A060602 The Eukaryotic (Putative) Sterol Transpor 100.0
KOG1934868 consensus Predicted membrane protein (patched supe 100.0
PF02460798 Patched: Patched family; InterPro: IPR003392 The t 100.0
KOG19351143 consensus Membrane protein Patched/PTCH [Signal tr 100.0
KOG19331201 consensus Cholesterol transport protein (Niemann-P 100.0
COG1033727 Predicted exporters of the RND superfamily [Genera 100.0
TIGR00921719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 100.0
TIGR00833910 actII Transport protein. Characterized members of 100.0
TIGR03480862 HpnN hopanoid biosynthesis associated RND transpor 100.0
TIGR00921 719 2A067 The (Largely Archaeal Putative) Hydrophobe/A 100.0
COG1033 727 Predicted exporters of the RND superfamily [Genera 99.98
TIGR009151044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.96
PRK106141025 multidrug efflux system subunit MdtC; Provisional 99.96
TIGR009141051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.95
PRK095791017 multidrug efflux protein; Reviewed 99.95
PRK105031040 multidrug efflux system subunit MdtB; Provisional 99.95
PRK105551037 aminoglycoside/multidrug efflux system; Provisiona 99.94
PRK095771032 multidrug efflux protein; Reviewed 99.94
PRK151271049 multidrug efflux system protein AcrB; Provisional 99.94
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.93
PRK13024755 bifunctional preprotein translocase subunit SecD/S 99.93
PF008731021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.92
TIGR03480 862 HpnN hopanoid biosynthesis associated RND transpor 99.92
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 99.91
PRK14726855 bifunctional preprotein translocase subunit SecD/S 99.9
COG08411009 AcrB Cation/multidrug efflux pump [Defense mechani 99.89
TIGR00833 910 actII Transport protein. Characterized members of 99.89
PRK13023758 bifunctional preprotein translocase subunit SecD/S 99.88
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 99.88
COG2409937 Predicted drug exporters of the RND superfamily [G 99.79
COG4258788 Predicted exporter [General function prediction on 99.78
PRK129111403 bifunctional preprotein translocase subunit SecD/S 99.76
PRK09579 1017 multidrug efflux protein; Reviewed 99.75
COG0841 1009 AcrB Cation/multidrug efflux pump [Defense mechani 99.75
TIGR00917 1204 2A060601 Niemann-Pick C type protein family. The m 99.75
PRK10614 1025 multidrug efflux system subunit MdtC; Provisional 99.74
PRK10555 1037 aminoglycoside/multidrug efflux system; Provisiona 99.74
PRK09577 1032 multidrug efflux protein; Reviewed 99.73
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.73
PRK15127 1049 multidrug efflux system protein AcrB; Provisional 99.73
TIGR00915 1044 2A0602 The (Largely Gram-negative Bacterial) Hydro 99.73
PF00873 1021 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010 99.73
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.73
PRK10503 1040 multidrug efflux system subunit MdtB; Provisional 99.72
PF03176333 MMPL: MMPL family; InterPro: IPR004869 Proteins of 99.68
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.66
TIGR00914 1051 2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu 99.65
PRK13024 755 bifunctional preprotein translocase subunit SecD/S 99.64
COG36961027 Putative silver efflux pump [Inorganic ion transpo 99.63
PRK08578292 preprotein translocase subunit SecF; Reviewed 99.61
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.6
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.59
PRK14726 855 bifunctional preprotein translocase subunit SecD/S 99.57
PRK13023 758 bifunctional preprotein translocase subunit SecD/S 99.57
TIGR00918 1145 2A060602 The Eukaryotic (Putative) Sterol Transpor 99.56
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 99.48
PF02355189 SecD_SecF: Protein export membrane protein; InterP 99.48
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 99.46
PRK12911 1403 bifunctional preprotein translocase subunit SecD/S 99.42
TIGR00916192 2A0604s01 protein-export membrane protein, SecD/Se 99.4
COG2409 937 Predicted drug exporters of the RND superfamily [G 99.39
PRK13022289 secF preprotein translocase subunit SecF; Reviewed 99.27
PF02460 798 Patched: Patched family; InterPro: IPR003392 The t 99.26
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 99.26
COG3696 1027 Putative silver efflux pump [Inorganic ion transpo 99.17
PF12349153 Sterol-sensing: Sterol-sensing domain of SREBP cle 99.14
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 99.06
KOG1934 868 consensus Predicted membrane protein (patched supe 99.05
TIGR00966246 3a0501s07 protein-export membrane protein SecF. Th 99.05
PRK05812498 secD preprotein translocase subunit SecD; Reviewed 99.05
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 99.01
TIGR01129397 secD protein-export membrane protein SecD. SecD fr 99.01
PRK08578292 preprotein translocase subunit SecF; Reviewed 98.88
PF02355189 SecD_SecF: Protein export membrane protein; InterP 98.85
COG4258 788 Predicted exporter [General function prediction on 98.77
PRK12933604 secD preprotein translocase subunit SecD; Reviewed 98.75
KOG1935 1143 consensus Membrane protein Patched/PTCH [Signal tr 98.68
PRK13021297 secF preprotein translocase subunit SecF; Reviewed 98.66
PRK08343417 secD preprotein translocase subunit SecD; Reviewed 98.33
KOG3664999 consensus Predicted patched transmembrane receptor 98.22
COG0341305 SecF Preprotein translocase subunit SecF [Intracel 98.16
COG0342506 SecD Preprotein translocase subunit SecD [Intracel 98.07
TIGR00920 886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 97.97
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information 
Probab=100.00  E-value=5.1e-82  Score=747.97  Aligned_cols=564  Identities=58%  Similarity=0.986  Sum_probs=503.6

Q ss_pred             CeeeehhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHH
Q 007203            1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK   80 (613)
Q Consensus         1 ~~~y~~~~~~~~~~~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~   80 (613)
                      ||+|+++.++++...+.+++|||+++++.|++++++|+++++|+++|+|++++++++.++|||++|||+||+|+++++|+
T Consensus       582 m~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~  661 (1204)
T TIGR00917       582 MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQ  661 (1204)
T ss_pred             HHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            68899999999876666899999999999999999999999999999999999867899999999999999999999997


Q ss_pred             hcCC--CC---------CHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203           81 RQPM--EL---------VLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA  149 (613)
Q Consensus        81 ~~~~--~~---------~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pa  149 (613)
                      +..+  +.         +.++|++++++++|+||++|++|+++||+++.++++|++|.||+++++|++++|++++|+|||
T Consensus       662 r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~a  741 (1204)
T TIGR00917       662 RLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVA  741 (1204)
T ss_pred             HhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6432  12         789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH--------------------------------------------hcccccCCccchhhHHHHHHHHHHHHHHhhhcc
Q 007203          150 LIE--------------------------------------------VHAPILGLWGVKMVVVSVFLAFTVASIALSTRI  185 (613)
Q Consensus       150 ll~--------------------------------------------~~~~~l~~~~~k~~vl~~~~~l~~~si~g~~~l  185 (613)
                      ++.                                            .|+|++.+++.|.++++++++++++|+||+.++
T Consensus       742 lL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i  821 (1204)
T TIGR00917       742 LLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI  821 (1204)
T ss_pred             HHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhc
Confidence            991                                            256788888899999999999999999999999


Q ss_pred             cccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEe-cCCCCchhhhhhhhhcccccCchhhHHHHHHhccCCCCccc
Q 007203          186 EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYI  264 (613)
Q Consensus       186 ~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~-~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~  264 (613)
                      +.|+|+++++|+||++.++++.++++|+.++|+++|++ +.||+++ ++|+++|...+|+++++.++.++      .+++
T Consensus       822 ~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~-~~q~~lc~~~~c~~~sl~~~~~~------~~~i  894 (1204)
T TIGR00917       822 DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDS-ESQNKVCTGGGCNKDSIVNVFNN------LTYI  894 (1204)
T ss_pred             CCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCH-HHHHHHhcccCCcHHHHHHhhcc------cchh
Confidence            99999999999999999999999999998999999998 5899886 46788987789999988876543      3455


Q ss_pred             cCCCCchHHHHHhhcCCCccccccc-ccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhh
Q 007203          265 AKPAASWLDDFLVWTSPEAFGCCRK-FVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREK  343 (613)
Q Consensus       265 ~~~~~~wl~~f~~~~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~  343 (613)
                      .+++.+|++||.+|+++.. +||+. ..++.++++.                  .++|..|.+...-..+.|+.++|+++
T Consensus       895 ~~~~~sWlddf~~wl~~~~-~cc~~~~~~~~~c~~~------------------~~~~~~c~~~~~~~~~~p~~~~F~~~  955 (1204)
T TIGR00917       895 AKPASSWLDDYFDWASPQS-SCCCRKFTNGTFCNGP------------------DPSCFRCADLSSNAQGRPSTTQFKEY  955 (1204)
T ss_pred             cCCchHHHHHHHHHhCccc-cceeecCCCCCcCCCc------------------cccccccccccccccCCCCHHHHHHH
Confidence            6778899999999998753 46653 2344444311                  13344444321222457888999999


Q ss_pred             hHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccc
Q 007203          344 LPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSV  423 (613)
Q Consensus       344 l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~  423 (613)
                      +++|++..|+.+|.+||+..|.+++++++++...|+++||+.+|+++++++|++++++++|+++++++++.++++++++.
T Consensus       956 l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~ 1035 (1204)
T TIGR00917       956 LPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSV 1035 (1204)
T ss_pred             HHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcC
Confidence            99999998989999999999998888876545569999999999999999999999999999999987656899999999


Q ss_pred             eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHh
Q 007203          424 FYIFFEQYLDIWRVALINIAVALGAIFIVCLLMT-SSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGI  502 (613)
Q Consensus       424 ~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~-~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl  502 (613)
                      .++|+|||..++++.+++++++++++++++++++ .+++.++++.++++++++.++|+|++||++||++|++.++|++|+
T Consensus      1036 ~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGi 1115 (1204)
T TIGR00917      1036 FYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGI 1115 (1204)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999998 489999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007203          503 AVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVF  581 (613)
Q Consensus       503 ~VD~sih~~~~~~~~-~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~  581 (613)
                      +||++.|+.++|.+. .+++++|+++|++++|+|++.|+++|+++|++||+|+++++++.||++|++.++++|++|+|++
T Consensus      1116 sV~f~~hI~~~f~~~~~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvf 1195 (1204)
T TIGR00917      1116 SIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVF 1195 (1204)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999876 4689999999999999999999557899999999999999999999999988889999999999


Q ss_pred             HHHHHHhhC
Q 007203          582 LPVILSLFG  590 (613)
Q Consensus       582 lP~ll~~~~  590 (613)
                      ||++|+++|
T Consensus      1196 LPVlLS~~G 1204 (1204)
T TIGR00917      1196 LPVLLSYIG 1204 (1204)
T ss_pred             HHHHHHhcC
Confidence            999999986

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family Back     alignment and domain information
>COG1033 Predicted exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR00833 actII Transport protein Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>PRK09579 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR00917 2A060601 Niemann-Pick C type protein family Back     alignment and domain information
>PRK10614 multidrug efflux system subunit MdtC; Provisional Back     alignment and domain information
>PRK10555 aminoglycoside/multidrug efflux system; Provisional Back     alignment and domain information
>PRK09577 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>PRK15127 multidrug efflux system protein AcrB; Provisional Back     alignment and domain information
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family Back     alignment and domain information
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors [] Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK10503 multidrug efflux system subunit MdtB; Provisional Back     alignment and domain information
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium) Back     alignment and domain information
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional Back     alignment and domain information
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed Back     alignment and domain information
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family Back     alignment and domain information
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only] Back     alignment and domain information
>PRK13022 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00966 3a0501s07 protein-export membrane protein SecF Back     alignment and domain information
>PRK05812 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR01129 secD protein-export membrane protein SecD Back     alignment and domain information
>PRK08578 preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>COG4258 Predicted exporter [General function prediction only] Back     alignment and domain information
>PRK12933 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] Back     alignment and domain information
>PRK13021 secF preprotein translocase subunit SecF; Reviewed Back     alignment and domain information
>PRK08343 secD preprotein translocase subunit SecD; Reviewed Back     alignment and domain information
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms] Back     alignment and domain information
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query613
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 60/438 (13%), Positives = 122/438 (27%), Gaps = 154/438 (35%)

Query: 51  KSTLIIM------EVI-PFLVLAVGVDNMC-ILVNAVKRQPMELVLETRISN-ALVEVGP 101
           ++ L+++      +    F       +  C IL+    +Q  + +     ++ +L     
Sbjct: 244 ENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 102 SITLASLSEFLAFAVG---SFIPMPAC----RVFSMFAAL----AVLLDFFLQVTAFVAL 150
           ++T   +   L   +      +P        R  S+ A          D +  V      
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN----- 351

Query: 151 IEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTE 210
                                         L+T IE+ L         +  +  F    +
Sbjct: 352 ---------------------------CDKLTTIIESSLNVL----EPAEYRKMF----D 376

Query: 211 YLRVGPPLYFVVKDYNYSS--------ESRHTNQLCSISQCDSNSLLNE--ISRASSIPE 260
            L V P         +  +        +   ++ +  +++    SL+ +       SIP 
Sbjct: 377 RLSVFP------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 261 LSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNG-----TYCPPDDQPPCCSPDEEPCGVN 315
           +          L+  L       +   R  V+      T+   D  PP            
Sbjct: 431 IY---------LE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY----------- 468

Query: 316 GVCKDCTTCF---RHSDLVNNRPSTEQFREKLPWFLN---------ALPSADCAKGGHGA 363
               D         H   + +      FR     FL+            +A  A G    
Sbjct: 469 ---LDQYFYSHIGHHLKNIEHPERMTLFRM---VFLDFRFLEQKIRHDSTAWNASGS--I 520

Query: 364 YSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSV 423
            +T   L  Y+  I         + P  ++   VN++    +F  ++ + L  +      
Sbjct: 521 LNTLQQLKFYKPYICD-------NDPKYER--LVNAIL---DFLPKIEENLICS------ 562

Query: 424 FYIFFEQYLDIWRVALIN 441
                 +Y D+ R+AL+ 
Sbjct: 563 ------KYTDLLRIALMA 574

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query613
3aqp_A741 Probable secdf protein-export membrane protein; tr 100.0
4dx5_A1057 Acriflavine resistance protein B; multidrug efflux 100.0
2v50_A1052 Multidrug resistance protein MEXB; DDM, RND, membr 100.0
3ne5_A1054 Cation efflux system protein CUSA; transmembrane h 100.0
4dx5_A 1057 Acriflavine resistance protein B; multidrug efflux 99.79
2v50_A 1052 Multidrug resistance protein MEXB; DDM, RND, membr 99.79
3aqp_A 741 Probable secdf protein-export membrane protein; tr 99.77
3ne5_A 1054 Cation efflux system protein CUSA; transmembrane h 99.72
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A Back     alignment and structure
Probab=100.00  E-value=2.3e-32  Score=313.37  Aligned_cols=424  Identities=14%  Similarity=0.161  Sum_probs=292.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhH
Q 007203           24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPS  102 (613)
Q Consensus        24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~  102 (613)
                      .+.++.+++++.+++++++|++.++|.++|. .+.+.+++.+|+++||++|+.++|+|+ +++.++++++.+++++++.|
T Consensus       295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~  373 (741)
T 3aqp_A          295 PHLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT  373 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            4467888999999999999999999999997 778888999999999999999999886 45788999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c-c----cCCc-cchhhHHH
Q 007203          103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA-------P-I----LGLW-GVKMVVVS  169 (613)
Q Consensus       103 i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~-------~-~----l~~~-~~k~~vl~  169 (613)
                      ++.|++||+++|+.+.+++.+.+|.||+..++|++++++.++++.|+++....       + +    ..++ ..|..+++
T Consensus       374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~  453 (741)
T 3aqp_A          374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNFMGPARYVTA  453 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCSTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccchhhHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999984211       1 0    1111 12333444


Q ss_pred             HHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEecCCCCchhhhhhhhhcccccCchhhH
Q 007203          170 VFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLL  249 (613)
Q Consensus       170 ~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~~d~~~~~~~~~~~~~~~~~~~~~l~  249 (613)
                      +.++++++++++...  .+      ++.+           ..|.++.++.+..++. . +.               +++.
T Consensus       454 i~~vl~~~~~~~~~~--~~------~~~~-----------~~f~Gg~~i~v~~~~~-~-~~---------------~~l~  497 (741)
T 3aqp_A          454 ATLLLAALAAGVVFA--KG------FNYS-----------IDFTGGTAYTLRAEPN-V-EV---------------ETLR  497 (741)
T ss_dssp             HHHHHHHHHHHHHHH--HT------CCCC-----------HHHHCEEEEEEEECTT-C-CH---------------HHHH
T ss_pred             HHHHHHHHHHHHHhh--cc------CCcc-----------eecCCCcEEEEEECCC-C-CH---------------HHHH
Confidence            445555666655421  11      1111           1122333444443321 0 00               0122


Q ss_pred             HHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCC
Q 007203          250 NEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSD  329 (613)
Q Consensus       250 ~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (613)
                      +.+++. .+++                                +     +.+                            
T Consensus       498 ~~l~~~-g~~~--------------------------------~-----~~~----------------------------  511 (741)
T 3aqp_A          498 RFLEEK-GFPG--------------------------------K-----EAV----------------------------  511 (741)
T ss_dssp             HHHHTT-TSCS--------------------------------S-----SCE----------------------------
T ss_pred             HHHHhc-CCCC--------------------------------C-----chh----------------------------
Confidence            222110 0000                                0     000                            


Q ss_pred             CCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHH
Q 007203          330 LVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSR  409 (613)
Q Consensus       330 ~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~  409 (613)
                             .+.       + .  ++.+   + .                   .++.+...+. +.++..+..++++   +.
T Consensus       512 -------v~~-------~-g--~~~~---~-~-------------------~~~~v~~~~~-~~~~~~~l~~~l~---~~  547 (741)
T 3aqp_A          512 -------ITQ-------V-Q--APTA---A-Y-------------------REFLVKLPPL-SDERRLELERLFA---SE  547 (741)
T ss_dssp             -------EEE-------C-------------C-------------------EEEEEEESCC-CHHHHHHHHHHHH---HH
T ss_pred             -------hhh-------c-c--CCCc---C-c-------------------eEEEEEeCCC-CHHHHHHHHHHHH---Hh
Confidence                   000       0 0  0000   0 0                   0111222221 2333333333333   22


Q ss_pred             hhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccch
Q 007203          410 MSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLN  489 (613)
Q Consensus       410 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln  489 (613)
                      ++. .+.+....|     .+..+++.++....++++++++++++.+.| |++.++.++++++..+++++|+|+++|+++|
T Consensus       548 ~~~-~~~~~~~vG-----~~~~~~~~~~~~~al~lali~i~l~l~~~F-s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~  620 (741)
T 3aqp_A          548 LKA-TVLASETVG-----PAIGEELRRNAVMAVLVGLGLILLYVAFRF-DWTFGVASILAVAHDVAIVAGMYSLLGLEFS  620 (741)
T ss_dssp             SSS-CCCEEEEEC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cCC-CceEEEEec-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            211 112222222     234445667777888888888888877777 9999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhHhcccchhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 007203          490 AVSVVNLIMSIGIAVEFCVHIVHAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYF  564 (613)
Q Consensus       490 ~~s~~~~~i~iGl~VD~sih~~~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~  564 (613)
                      ..+++.+++.+|++|||+||+.+||+++.     .+.++++.++++++++|+++++ +||++||++|++++.+..+.|+.
T Consensus       621 ~~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Ts-ltt~~g~~~L~~~g~~~~~~~g~  699 (741)
T 3aqp_A          621 IPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTS-LTTLLPILALLFLGGSVLRDFAL  699 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHH
Confidence            99999999999999999999999998863     2789999999999999999998 79999999999999999999854


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccccc
Q 007203          565 QMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQA  603 (613)
Q Consensus       565 ~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~~~~~~  603 (613)
                       .++++++++.+.+++++|+++.++++++++++.+|+-.
T Consensus       700 -~~~~Gl~~~~~~sl~l~Pal~~~~~~~~~~~~~~~~~~  737 (741)
T 3aqp_A          700 -AIFVGIFVGTYSSIYVVSALVVAWKNRRKAQEASKAHH  737 (741)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccc
Confidence             34456889999999999999999988777777677443
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ... Back     alignment and structure
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A Back     alignment and structure
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ... Back     alignment and structure
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} Back     alignment and structure
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A Back     alignment and structure
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 613
d1iwga7199 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux trans 2e-07
d1iwga8222 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux t 3e-05
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 199 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 20/156 (12%), Positives = 58/156 (37%), Gaps = 5/156 (3%)

Query: 439 LINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIM 498
           +  +  A+  +F+V  L   +  ++ I  + + ++++    V+A  G  +N +++  +++
Sbjct: 42  VKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVL 101

Query: 499 SIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEI 558
           +IG+ V+  + +V              ++A       +   +    +V   V        
Sbjct: 102 AIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFG 161

Query: 559 FVVYYFQMYLALVIIG-----FLHGLVFLPVILSLF 589
                     ++ I+       L  L+  P + +  
Sbjct: 162 GSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 197
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query613
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.85
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.76
d1iwga7199 Multidrug efflux transporter AcrB transmembrane do 99.51
d1iwga8222 Multidrug efflux transporter AcrB transmembrane do 99.25
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.1e-20  Score=180.45  Aligned_cols=157  Identities=12%  Similarity=0.269  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHH
Q 007203          433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH  512 (613)
Q Consensus       433 ~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~  512 (613)
                      +-.++...++.++++++++++++++||++.++++++++..++++++|.|+++|+++|..+....++++|+++||++|+.+
T Consensus        36 ~si~~~~~~l~ia~~lv~~vl~l~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~i~i~~  115 (199)
T d1iwga7          36 ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVE  115 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            33567788889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHh---c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203          513 AFLVS---H-GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSE---IFVVYYFQMYLALVIIGFLHGLVFLPVI  585 (613)
Q Consensus       513 ~~~~~---~-~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~---~~~~f~~~~~~~~~~~~l~~~l~~lP~l  585 (613)
                      +|+++   + .+++|+++++.+++|+|++.++ +||++||.++++++..   ++++++. ....++.++++++++++|++
T Consensus       116 ~~~~~~~~~g~~~~eAi~~a~~~~g~~i~~s~-lTt~~~f~~l~~~~~~~~~~~~~~g~-~i~~gv~~s~i~al~llPal  193 (199)
T d1iwga7         116 NVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQFSI-TIVSAMALSVLVALILTPAL  193 (199)
T ss_dssp             HHHHHHHHTSCCSHHHHHHGGGTHHHHHHHHH-HHHHHHHTTTTCCCTTSHHHHHHHHH-HHHHHHHHHHHHTTTHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhHhhhHHHHHH-HHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            76442   3 4789999999999999999998 7999999999998864   4677643 44456888999999999999


Q ss_pred             HHhhCC
Q 007203          586 LSLFGP  591 (613)
Q Consensus       586 l~~~~~  591 (613)
                      ++++.+
T Consensus       194 l~~~~K  199 (199)
T d1iwga7         194 CATMLK  199 (199)
T ss_dssp             HHHSCC
T ss_pred             HHHhcC
Confidence            998864
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure