Citrus Sinensis ID: 007204

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---

MMNAESTSTTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQRRLNTSFSTCKLLKFVVS

cccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccEEEEEEcccEEEEEEEEEccEEEEEEEEEEccccEEEEEEEccccccEEEEEEEccccccccEEccccEEEEEEEEcccccccccccccccccEEEEEEEEEEEEccccEEEEEccccEEEEcccEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcEEEccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc

cccccccccccccEEEEcccHHHHHHccccccccEEEEEEcccccEEEEEcHcHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccEEEEcccccccccccccEEEEccccEEEEEEEEEccEEEEEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccEEEccccEEEEEEcccccccccccccccccccEEEEEEEEEEEEEcccEEEEEcccEEEEEcccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccEEEEccccHHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHccEEEEEccccccccccccccEccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccEEEEccccHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHcccccccccHEEEEEEEEc

mmnaeststtnplkitfngpakhftdaipigngrlgamvwggvpsetlklnedtlwtgvpgdytnpdapkalsDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIelefddshLKYAEETYRRELDLNTATARVKYSvgnveftrehfssnpdqVIVTKIsgsesgslsfnvsldslldnhsyvngnnqiimegrcpgkrippkananddpkgiqFSAILEIkisddrgtisaledkklkvegSDWAVLLLVASssfdgpfinpsdskkdptsESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSiqlsrspkdivtdtcseenidtvpsaervksfqtdedpsLVELLFQFGRYLLisssrpgtqvanlqgiwnedlsptwdsaphvninlemnywqslpcnlsecqepLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIeghdgyletnpstspehefiapdgklacvsysstMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKslprlrptkiaedgSIMEWVQRRLNTSFSTCKLLKFVVS

mmnaeststtnplkiTFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEftrehfssnpdqVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASssfdgpfinpsdskkdptsESMSALQSIRNLSYSDLYTRHLDDYQKLFHrvsiqlsrspkdivtdtcseenidtvpsaervksfqtdedPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVlkslprlrptkiaedgsimeWVQRRLntsfstckllkfvvs

*************KITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYT**********VRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFS***DQVIVTKI*******LSFNVSLDSLLDNHSYVNGNNQIIMEGR******************IQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSF*************************RNLSYSDLYTRHLDDYQKLFHRVSIQLS*****IV***************************SLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLET********EFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQRRLNTSFSTCKLLKFV**

**************ITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKD*****CSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQRRLNTSFSTCKLLKFVVS

**********NPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPS**************QSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQRRLNTSFSTCKLLKFVVS

*****S**TTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRS***************TVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQRRLNTSFSTCKLLKFVVS

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		613	2.2.26 [Sep-21-2011]
Q8L7W8		843	Alpha-L-fucosidase 2 OS=A	yes	no	0.942	0.685	0.635	0.0
Q5AU81		809	Alpha-fucosidase A OS=Eme	no	no	0.862	0.653	0.296	4e-59
A2R797		793	Probable alpha-fucosidase	no	no	0.864	0.668	0.295	4e-57
Q2USL3		723	Probable alpha-fucosidase	no	no	0.817	0.692	0.244	7e-31

>sp\|Q8L7W8\|FUCO2_ARATH Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=At4g34260 PE=2 SV=1	Back alignment and function desciption

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/595 (63%), Positives = 465/595 (78%), Gaps = 17/595 (2%)

Query: 10  TNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAP 69
           + PLK+TF GP++++TDAIPIGNGRLGA +WGGV SE L +NEDT+WTGVP DYTN  AP
Sbjct: 49  SRPLKLTFGGPSRNWTDAIPIGNGRLGATIWGGVSSEILNINEDTIWTGVPADYTNQKAP 108

Query: 70  KALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELD 129
           +AL++VR LVD   YAEAT+ +VKL G P+DVYQ++GD+ LEFD SH KY + +YRRELD
Sbjct: 109 EALAEVRRLVDERNYAEATSEAVKLSGQPSDVYQIVGDLNLEFDSSHRKYTQASYRRELD 168

Query: 130 LNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNG 189
           L TA A+V YSVG V+F+RE F+SNPDQVI+ KI  S+ GSLSF VS DS L +HS  N 
Sbjct: 169 LETAVAKVSYSVGAVDFSREFFASNPDQVIIAKIYASKPGSLSFKVSFDSELHHHSETNP 228

Query: 190 N-NQIIMEGRCPGKRIP----PKANAN----DDPKGIQFSAILEIKISDDRGTISALEDK 240
             NQI+M G C  KR+P       NA     DD KG+QF++ILE+++S+  G++S+L  K
Sbjct: 229 KANQILMRGSCRPKRLPVNLKKSINATNIPYDDHKGLQFASILEVRVSNG-GSVSSLGGK 287

Query: 241 KLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDD 300
           KL VE +DWAVLLL ASS+FDGPF  P DSK DP  E ++ + S++  SYSDLY RHL D
Sbjct: 288 KLSVEKADWAVLLLAASSNFDGPFTMPVDSKIDPAKECVNRISSVQKYSYSDLYARHLGD 347

Query: 301 YQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYL 360
           YQKLF+RVS+ LS S       + +E       +AERV+SF+TD+DPSLVELLFQ+GRYL
Sbjct: 348 YQKLFNRVSLHLSGS-------STNETVQQATSTAERVRSFKTDQDPSLVELLFQYGRYL 400

Query: 361 LISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLT 420
           LISSSRPGTQVANLQGIWN D+ P WD APH+NINL+MNYW SLP N+ ECQEPLFD+++
Sbjct: 401 LISSSRPGTQVANLQGIWNRDIQPPWDGAPHLNINLQMNYWHSLPGNIRECQEPLFDYMS 460

Query: 421 YLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNY 480
            L+ING KTAQVNY ASGWV H  +DIWAK+S DRG+ VWALWPMGGAWLCTH WEHY Y
Sbjct: 461 ALAINGRKTAQVNYGASGWVAHQVSDIWAKTSPDRGEAVWALWPMGGAWLCTHAWEHYTY 520

Query: 481 TMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSS 540
           TMD++FL+K+ YPLLEGC SFLLDWLI+G DG+L+TNPSTSPEH F AP GK A VSYSS
Sbjct: 521 TMDKEFLKKKGYPLLEGCTSFLLDWLIKGKDGFLQTNPSTSPEHMFTAPIGKPASVSYSS 580

Query: 541 TMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQ 595
           TMD+AII+EVF+ I+SA+E+L K  D L+ KV+ +  +L PT+I++DGSI EW +
Sbjct: 581 TMDIAIIKEVFADIVSASEILGKTNDTLIGKVIAAQAKLPPTRISKDGSIREWAE 635

Hydrolyzes alpha-1,2-linked fucose. Also active on fucosylated xyloglucan oligosaccharides.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 1

>sp\|Q5AU81\|AFCA_EMENI Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=afcA PE=2 SV=1	Back alignment and function description

>sp\|A2R797\|AFCA_ASPNC Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=afcA PE=3 SV=1	Back alignment and function description

>sp\|Q2USL3\|AFCA_ASPOR Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=afcA PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		613
255573091		840	conserved hypothetical protein [Ricinus	0.959	0.7	0.746	0.0
224103693		836	predicted protein [Populus trichocarpa]	0.969	0.710	0.724	0.0
224103687		803	predicted protein [Populus trichocarpa]	0.957	0.731	0.732	0.0
224056204		808	predicted protein [Populus trichocarpa]	0.967	0.733	0.718	0.0
359475494		817	PREDICTED: alpha-L-fucosidase 2-like [Vi	0.938	0.703	0.741	0.0
356574288		876	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.952	0.666	0.685	0.0
356575686		874	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.967	0.678	0.669	0.0
356536151		877	PREDICTED: alpha-L-fucosidase 2-like [Gl	0.952	0.665	0.677	0.0
224056206		843	predicted protein [Populus trichocarpa]	0.949	0.690	0.687	0.0
255573093		849	conserved hypothetical protein [Ricinus	0.952	0.687	0.687	0.0

>gi\|255573091\|ref\|XP_002527475.1\| conserved hypothetical protein [Ricinus communis] gi\|223533115\|gb\|EEF34873.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/603 (74%), Positives = 513/603 (85%), Gaps = 15/603 (2%)

Query: 8   STTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPD 67
           S   PLK+TFNGPAKH+TD+IPIGNGR+GAM+ GG+ SE ++LNEDTLWTGVPG+YTNP+
Sbjct: 20  SYNKPLKVTFNGPAKHWTDSIPIGNGRIGAMISGGMQSEIIQLNEDTLWTGVPGNYTNPN 79

Query: 68  APKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRE 127
           A +ALS+VR LVD G YAEATAASVK FG+PADVYQLLGD++LEFDDSHL YA+ETY RE
Sbjct: 80  ALEALSEVRKLVDDGLYAEATAASVKFFGNPADVYQLLGDVKLEFDDSHLTYADETYYRE 139

Query: 128 LDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYV 187
           LDL+TATARV+YSVG+V+FT+E+F+SNPDQV V KISGS+SGSLSF VSLDS LD+H YV
Sbjct: 140 LDLDTATARVQYSVGDVKFTKEYFASNPDQVAVIKISGSKSGSLSFTVSLDSKLDHHCYV 199

Query: 188 NGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGS 247
           N  NQIIMEG CP KRIPPK +AN++PKGI+FSA+L++ +SD  G I  L++KKLKVEGS
Sbjct: 200 NVENQIIMEGSCPEKRIPPKMSANENPKGIKFSAVLDLHVSDGVGVIHVLDNKKLKVEGS 259

Query: 248 DWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHR 307
           DW VLLL ASSSF+ P   PSDSKKDPTSES+ AL++I NLSYSDLY RHL DYQKLFHR
Sbjct: 260 DWGVLLLAASSSFESPLTKPSDSKKDPTSESLRALKAITNLSYSDLYARHLHDYQKLFHR 319

Query: 308 VSIQLSRSPKDIVTDTCSEENI---------------DTVPSAERVKSFQTDEDPSLVEL 352
           VS QL +S   IV D     N                D VP+ ER+KSFQ+DEDPSLVEL
Sbjct: 320 VSFQLWKSSNRIVGDESQLTNNLIPSANALYVKGIKDDAVPTVERIKSFQSDEDPSLVEL 379

Query: 353 LFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQ 412
           LFQFGRYLLIS SRPGTQVANLQG+WN+DL PTWDSAPH+NINLEMNYW SLPCNL+ECQ
Sbjct: 380 LFQFGRYLLISCSRPGTQVANLQGVWNKDLEPTWDSAPHLNINLEMNYWLSLPCNLNECQ 439

Query: 413 EPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCT 472
           EPLFDF+  LS+NGSKTAQVNY ASGWVIHHK+DIWAKSSADRG  VWALWP+GGAWLCT
Sbjct: 440 EPLFDFIKSLSVNGSKTAQVNYGASGWVIHHKSDIWAKSSADRGDAVWALWPIGGAWLCT 499

Query: 473 HLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGK 532
           HLWEHYNYTMD++FLE  AY LLEGC SFLLDWL+EG +GYLETNPSTSPEH FI PDGK
Sbjct: 500 HLWEHYNYTMDKEFLENEAYFLLEGCVSFLLDWLVEGSEGYLETNPSTSPEHMFITPDGK 559

Query: 533 LACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIME 592
            ACVSYSSTMDMAIIREVFS+ +SA+EVL +N+D LV+ V  +LPRLRPTKIAEDGSIME
Sbjct: 560 PACVSYSSTMDMAIIREVFSSFVSASEVLGRNKDVLVQNVHTALPRLRPTKIAEDGSIME 619

Query: 593 WVQ 595
           WV+
Sbjct: 620 WVR 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224103693\|ref\|XP_002313157.1\| predicted protein [Populus trichocarpa] gi\|222849565\|gb\|EEE87112.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224103687\|ref\|XP_002313154.1\| predicted protein [Populus trichocarpa] gi\|222849562\|gb\|EEE87109.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224056204\|ref\|XP_002298754.1\| predicted protein [Populus trichocarpa] gi\|222846012\|gb\|EEE83559.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359475494\|ref\|XP_002270199.2\| PREDICTED: alpha-L-fucosidase 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356574288\|ref\|XP_003555281.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356575686\|ref\|XP_003555969.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356536151\|ref\|XP_003536603.1\| PREDICTED: alpha-L-fucosidase 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|224056206\|ref\|XP_002298755.1\| predicted protein [Populus trichocarpa] gi\|222846013\|gb\|EEE83560.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255573093\|ref\|XP_002527476.1\| conserved hypothetical protein [Ricinus communis] gi\|223533116\|gb\|EEF34874.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		613
TAIR\|locus:2116154		843	FUC95A [Arabidopsis thaliana (	0.954	0.693	0.629	1.2e-207
UNIPROTKB\|G4NET6		827	MGG_00050 "Uncharacterized pro	0.507	0.376	0.375	2.4e-78
ASPGD\|ASPL0000008702		831	afcB [Emericella nidulans (tax	0.913	0.673	0.331	2.7e-68
ASPGD\|ASPL0000014922		809	afcA [Emericella nidulans (tax	0.871	0.660	0.302	5.5e-61
UNIPROTKB\|Q5AU81		809	afcA "Alpha-fucosidase A" [Asp	0.871	0.660	0.302	5.5e-61
ASPGD\|ASPL0000035173		757	afcC [Emericella nidulans (tax	0.522	0.422	0.372	1.5e-58

TAIR\|locus:2116154 FUC95A [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
 Identities = 380/604 (62%), Positives = 471/604 (77%)

Query:     1 MMNAESTSTTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVP 60
             +M+ +  S   PLK+TF GP++++TDAIPIGNGRLGA +WGGV SE L +NEDT+WTGVP
Sbjct:    42 LMDGQDLS--RPLKLTFGGPSRNWTDAIPIGNGRLGATIWGGVSSEILNINEDTIWTGVP 99

Query:    61 GDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYA 120
              DYTN  AP+AL++VR LVD   YAEAT+ +VKL G P+DVYQ++GD+ LEFD SH KY 
Sbjct:   100 ADYTNQKAPEALAEVRRLVDERNYAEATSEAVKLSGQPSDVYQIVGDLNLEFDSSHRKYT 159

Query:   121 EETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSL 180
             + +YRRELDL TA A+V YSVG V+F+RE F+SNPDQVI+ KI  S+ GSLSF VS DS 
Sbjct:   160 QASYRRELDLETAVAKVSYSVGAVDFSREFFASNPDQVIIAKIYASKPGSLSFKVSFDSE 219

Query:   181 LDNHSYVNGN-NQIIMEGRCPGKRIPP--KANAN------DDPKGIQFSAILEIKISDDR 231
             L +HS  N   NQI+M G C  KR+P   K + N      DD KG+QF++ILE+++S+  
Sbjct:   220 LHHHSETNPKANQILMRGSCRPKRLPVNLKKSINATNIPYDDHKGLQFASILEVRVSNG- 278

Query:   232 GTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYS 291
             G++S+L  KKL VE +DWAVLLL ASS+FDGPF  P DSK DP  E ++ + S++  SYS
Sbjct:   279 GSVSSLGGKKLSVEKADWAVLLLAASSNFDGPFTMPVDSKIDPAKECVNRISSVQKYSYS 338

Query:   292 DLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVE 351
             DLY RHL DYQKLF+RVS+ LS S  +   +T  +       +AERV+SF+TD+DPSLVE
Sbjct:   339 DLYARHLGDYQKLFNRVSLHLSGSSTN---ETVQQ----ATSTAERVRSFKTDQDPSLVE 391

Query:   352 LLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSEC 411
             LLFQ+GRYLLISSSRPGTQVANLQGIWN D+ P WD APH+NINL+MNYW SLP N+ EC
Sbjct:   392 LLFQYGRYLLISSSRPGTQVANLQGIWNRDIQPPWDGAPHLNINLQMNYWHSLPGNIREC 451

Query:   412 QEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLC 471
             QEPLFD+++ L+ING KTAQVNY ASGWV H  +DIWAK+S DRG+ VWALWPMGGAWLC
Sbjct:   452 QEPLFDYMSALAINGRKTAQVNYGASGWVAHQVSDIWAKTSPDRGEAVWALWPMGGAWLC 511

Query:   472 THLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDG 531
             TH WEHY YTMD++FL+K+ YPLLEGC SFLLDWLI+G DG+L+TNPSTSPEH F AP G
Sbjct:   512 THAWEHYTYTMDKEFLKKKGYPLLEGCTSFLLDWLIKGKDGFLQTNPSTSPEHMFTAPIG 571

Query:   532 KLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIM 591
             K A VSYSSTMD+AII+EVF+ I+SA+E+L K  D L+ KV+ +  +L PT+I++DGSI 
Sbjct:   572 KPASVSYSSTMDIAIIKEVFADIVSASEILGKTNDTLIGKVIAAQAKLPPTRISKDGSIR 631

Query:   592 EWVQ 595
             EW +
Sbjct:   632 EWAE 635

GO:0003824 "catalytic activity" evidence=IEA

GO:0004560 "alpha-L-fucosidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0047513 "1,2-alpha-L-fucosidase activity" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

UNIPROTKB\|G4NET6 MGG_00050 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000008702 afcB [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000014922 afcA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AU81 afcA "Alpha-fucosidase A" [Aspergillus nidulans FGSC A4 (taxid:227321)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000035173 afcC [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W8	FUCO2_ARATH	3, ., 2, ., 1, ., 5, 1	0.6352	0.9429	0.6856	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		613
PF14498		236	Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-t	100.0
PRK13807		756	maltose phosphorylase; Provisional	100.0
COG1554		772	ATH1 Trehalose and maltose hydrolases (possible ph	100.0
PF03632		370	Glyco_hydro_65m: Glycosyl hydrolase family 65 cent	99.9
KOG4125		682	consensus Acid trehalase [Carbohydrate transport a	99.81
PF10222		604	DUF2152: Uncharacterized conserved protein (DUF215	98.42
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	97.89
PF04685		365	DUF608: Protein of unknown function, DUF608; Inter	97.16
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	96.36
TIGR01535		648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	96.17
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	92.61
COG3387		612	SGA1 Glucoamylase and related glycosyl hydrolases	89.78
PF03636		255	Glyco_hydro_65N: Glycosyl hydrolase family 65, N-t	86.96
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	84.45
COG4354		721	Predicted bile acid beta-glucosidase [Carbohydrate	84.44
COG3408		641	GDB1 Glycogen debranching enzyme [Carbohydrate tra	82.1

>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A	Back alignment and domain information

Probab=100.00  E-value=3.1e-54  Score=435.93  Aligned_cols=231  Identities=41%  Similarity=0.737  Sum_probs=191.2

Q ss_pred             EEEcCCCCCccccccccCCcceeeecCCCCcceEEeeccccccCCCCCCCCCCchhhHHHHHHHHhcCChHHHHHHHHhh
Q 007204           15 ITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKL   94 (613)
Q Consensus        15 l~y~~PA~~W~ealpiGNGrlGamv~G~~~~e~i~lNe~tlWsg~p~~~~~~~~~~~l~~iR~ll~~g~~~~A~~l~~~~   94 (613)
                      |||++||..|+||||||||||||||||++.+|+|+|||+|||+|+|....++++++.|++||+||++|+|++|++|++++
T Consensus         1 Lwy~~PA~~W~ealPiGNG~lGamv~G~~~~E~i~lNe~tlWsg~p~~~~~~~~~~~L~~iR~l~~~g~~~~A~~l~~~~   80 (236)
T PF14498_consen    1 LWYDKPASDWEEALPIGNGRLGAMVYGGPAKERIQLNEDTLWSGGPSDRTPPDAAEYLPEIRELLFEGDYEEAEELAEEN   80 (236)
T ss_dssp             EEESS-GCCHHHSEEEESSSEEEEE---SSEEEEEEEETT-BSSSTTSSSSHHHHHHHHHHHHHHHTT-CCHHHHHHCCS
T ss_pred             CccCChhhhhhhhcEecCccceEEecCCCCeEEEEEcchheECCCCccccCccHHHHHHHHHHHHHcCChhHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999888888899999999999999999999999875


Q ss_pred             cC-CCC-CCCccceEEEEEecCCCCccCCCCeEEEeeccccEEEEEEEeCCEEEEEEEEeecCCCEEEEEEEeCCCCceE
Q 007204           95 FG-HPA-DVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLS  172 (613)
Q Consensus        95 ~g-~~~-~~y~~~g~L~l~~~~~~~~~~~~~Y~R~LDl~~a~~~v~~~~~g~~~~re~F~S~pd~viv~~i~a~~~~~l~  172 (613)
                      ++ .+. ++|||+|+|.|++......  +++|+|+|||++|+++|+|+.+|+.|+|++|||+||+|||+||+++++++|+
T Consensus        81 ~~~~~~~~~y~p~g~L~i~~~~~~~~--~~~Y~R~LDl~~a~~~v~~~~~g~~~~re~FaS~pd~viv~r~~~~~~~~l~  158 (236)
T PF14498_consen   81 FGGEPGYGSYQPLGDLYIDFFPDAGD--VSDYRRELDLETAVATVSYTDGGVRYRREYFASRPDDVIVIRISASKPGGLN  158 (236)
T ss_dssp             -B---HH--B---EEEEEEESSSS-----CEEEEEEETTTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEESSTT-EE
T ss_pred             ccCCCccccCCcceEEEEEEeCCCCC--CCcEEEEEEccCcEEEEEEEECCEEEEEEEEEECCCCEEEEEEEcCCCCcEE
Confidence            54 343 7899999999995433333  5699999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCC--CcccccCCCeEEEEeecCCCCCCCCCCCCCCCCCceEEEEEEEEEeCCCeeEEEecCCeEEEeCCcEE
Q 007204          173 FNVSLDSLLD--NHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWA  250 (613)
Q Consensus       173 ~~~~l~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~i~v~~a~~v  250 (613)
                      ++++|+++..  ......+++.+++.|++|            ..+|++|+++++|+.+|  |+|+. .+++|+|++|++|
T Consensus       159 ~~l~l~~~~~~~~~~~~~~~~~l~~~g~~~------------~~~g~~~~~~~~v~~~g--G~v~~-~~~~l~v~~A~~v  223 (236)
T PF14498_consen  159 LTLSLDRPLRTRSAVVTAGGGTLTLRGQAP------------GDNGMRFAGRVRVVATG--GTVTA-DGGGLRVEGADEV  223 (236)
T ss_dssp             EEEEEEBSTTSCEEEEEEETTEEEEEEEE-------------TTTS-EEEEEEEEEECC--CECEC-CTTCEEEEEESEE
T ss_pred             EEEEecCCcccccceEeecCCEEEEEEEeC------------CCCCeEEEEEEEEEeCC--CEEEe-eCCEEEEeCCCEE
Confidence            9999999863  333345678999999875            24799999999997776  88854 6779999999999


Q ss_pred             EEEEEEeecCCC
Q 007204          251 VLLLVASSSFDG  262 (613)
Q Consensus       251 ~i~~~~~t~y~~  262 (613)
                      +|++++.|+|++
T Consensus       224 ~l~~~~~T~y~~  235 (236)
T PF14498_consen  224 TLYVSAATDYRG  235 (236)
T ss_dssp             EEEEEEEESEET
T ss_pred             EEEEEEEecCCC
Confidence            999999999974

>PRK13807 maltose phosphorylase; Provisional	Back alignment and domain information

>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3	Back alignment and domain information

>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		613
2rdy_A		803	Crystal Structure Of A Putative Glycoside Hydrolase		1e-119
2eae_A		898	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		1e-49
2eab_A		899	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		1e-49
2ead_A		899	Crystal Structure Of 1,2-A-L-Fucosidase From Bifido		5e-49

>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family Protein From Bacillus Halodurans Length = 803

Back alignment and structure

Iteration: 1

Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/595 (41%), Positives = 332/595 (55%), Gaps = 37/595 (6%) Query: 13 LKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKAL 72 LKI F+ PA +T+A+PIGNG LGA V+G V E + LNEDTLW+G P D+ NP A + L Sbjct: 3 LKIQFDFPASFWTEALPIGNGNLGAXVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEVL 62 Query: 73 SDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNT 132 VR L+ +Y EA S G Y GD+ + D H + Y RELDL+T Sbjct: 63 PKVRELIAQEKYEEADQLSRDXXGPYTQSYLPFGDLNIFXD--HGQVVAPHYHRELDLST 120 Query: 133 ATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNNQ 192 V Y++G V++TRE F + PD+ IV +++ S+ G LSF LDSLL + S V G Sbjct: 121 GIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSV-GAEH 179 Query: 193 IIMEGRCP--------GKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKV 244 + G P + P + D +G F L + + G ++ L V Sbjct: 180 YTISGTAPEHVSPSYYDEENPVRYGHPDXSQGXTFHGRL---AAVNEGGSLKVDADGLHV 236 Query: 245 EGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKL 304 G+ A L AS+SFD P S ++DP+ ++ +++I Y ++ RHL+DY KL Sbjct: 237 XGATCATLYFSASTSFD-PSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTKL 295 Query: 305 FHRVSIQLSRS--PKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLI 362 F+RVS+ L S P D TD +R+K + + D LVELLFQ+GRYL I Sbjct: 296 FNRVSLHLGESIAPADXSTD-------------QRIKEYGS-RDLGLVELLFQYGRYLXI 341 Query: 363 SSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYL 422 +SSRPGTQ ANLQGIWNE+ W S +NIN E NYW + CNL+E +PL F+ L Sbjct: 342 ASSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEXNYWPAETCNLAELHKPLIHFIERL 401 Query: 423 SINGSKTAQVNYLASGWVIHHKTDIWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHY 478 + NG KTA++NY A GWV HH D+W +++ G VWA WP GG WL HLWEHY Sbjct: 402 AANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPXGGVWLTQHLWEHY 461 Query: 479 NYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSY 538 + D +L AYP+ + A F LDWLIE GYL T+PSTSPE F + K VS Sbjct: 462 TFGEDEAYLRDTAYPIXKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIGE-KGYAVSS 520 Query: 539 SSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEW 593 ++T D+++I E F I AA+ L +ED V+ + + RL P +I + G + EW Sbjct: 521 ATTXDLSLIAECFDNCIQAAKRLSIDED-FVKALSDAKQRLLPLQIGKRGQLQEW 574

PyMOL of 2rdy

>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complexes With Products Length = 898

Back alignment and structure

>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum (Apo Form) Length = 899

Back alignment and structure

>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate Length = 899

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		613
2rdy_A		803	BH0842 protein; PSI-II, structural genomics, prote	1e-176
2eab_A		899	Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi	1e-145
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1h54_A		754	Maltose phosphorylase; hydrolase, maltose metaboli	5e-07

>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125} Length = 803	Back alignment and structure

 Score =  520 bits (1339), Expect = e-176
 Identities = 243/594 (40%), Positives = 334/594 (56%), Gaps = 33/594 (5%)

Query: 12  PLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKA 71
            LKI F+ PA  +T+A+PIGNG LGAMV+G V  E + LNEDTLW+G P D+ NP A + 
Sbjct: 2   SLKIQFDFPASFWTEALPIGNGNLGAMVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEV 61

Query: 72  LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
           L  VR L+   +Y EA   S  + G     Y   GD+ +  D   +      Y RELDL+
Sbjct: 62  LPKVRELIAQEKYEEADQLSRDMMGPYTQSYLPFGDLNIFMDHGQVVAPH--YHRELDLS 119

Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNGNN 191
           T    V Y++G V++TRE F + PD+ IV +++ S+ G LSF   LDSLL + S V G  
Sbjct: 120 TGIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFLSFRAKLDSLLRHVSSV-GAE 178

Query: 192 QIIMEGRCPGKRIPPKANAN--------DDPKGIQFSAILEIKISDDRGTISALEDKKLK 243
              + G  P    P   +          D  +G+ F   L        G++   +   L 
Sbjct: 179 HYTISGTAPEHVSPSYYDEENPVRYGHPDMSQGMTFHGRLAAVNEG--GSLKV-DADGLH 235

Query: 244 VEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQK 303
           V G+  A L   AS+SFD P    S  ++DP+  ++  +++I    Y ++  RHL+DY K
Sbjct: 236 VMGATCATLYFSASTSFD-PSTGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTK 294

Query: 304 LFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLIS 363
           LF+RVS+ L  S                + + +R+K + +  D  LVELLFQ+GRYL+I+
Sbjct: 295 LFNRVSLHLGESIAP-----------ADMSTDQRIKEYGS-RDLGLVELLFQYGRYLMIA 342

Query: 364 SSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLS 423
           SSRPGTQ ANLQGIWNE+    W S   +NIN EMNYW +  CNL+E  +PL  F+  L+
Sbjct: 343 SSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEMNYWPAETCNLAELHKPLIHFIERLA 402

Query: 424 INGSKTAQVNYLASGWVIHHKTDIWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHYN 479
            NG KTA++NY A GWV HH  D+W +++       G  VWA WPMGG WL  HLWEHY 
Sbjct: 403 ANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPMGGVWLTQHLWEHYT 462

Query: 480 YTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYS 539
           +  D  +L   AYP+++  A F LDWLIE   GYL T+PSTSPE  F   +   A  S +
Sbjct: 463 FGEDEAYLRDTAYPIMKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIGEKGYAV-SSA 521

Query: 540 STMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEW 593
           +TMD+++I E F   I AA+ L  +ED  V+ +  +  RL P +I + G + EW
Sbjct: 522 TTMDLSLIAECFDNCIQAAKRLSIDED-FVKALSDAKQRLLPLQIGKRGQLQEW 574

PyMOL of 2rdy

>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A* Length = 899	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3 Length = 754	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		613
2rdy_A		803	BH0842 protein; PSI-II, structural genomics, prote	100.0
2eab_A		899	Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi	100.0
1h54_A		754	Maltose phosphorylase; hydrolase, maltose metaboli	100.0
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	98.01
2okx_A		956	Rhamnosidase B; alpha barrel, glycoside hydrolase	97.7
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	96.42
3rrs_A		822	Cellobiose phosphorylase; GH94, alpha barrel, disa	96.07
3qde_A		811	Cellobiose phosphorylase; cellulase, phosphate, tr	95.97
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	95.47
2p0v_A		489	Hypothetical protein BT3781; alpha-beta protein, s	92.74
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	92.16
2ahf_A		377	Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba	90.99
1ulv_A		1020	Glucodextranase; GH family 15, (alpha-alpha)6-barr	90.67
2zzr_A		397	Unsaturated glucuronyl hydrolase; alpha barrel; 1.	87.28
2vn4_A		599	Glucoamylase; hydrolase, carbohydrate binding, gly	83.9

>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125}	Back alignment and structure

Probab=100.00  E-value=5.5e-121  Score=1063.10  Aligned_cols=568  Identities=42%  Similarity=0.764  Sum_probs=506.6

Q ss_pred             CceEEEcCCCCCccccccccCCcceeeecCCCCcceEEeeccccccCCCCCCCCCCchhhHHHHHHHHhcCChHHHHHHH
Q 007204           12 PLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAAS   91 (613)
Q Consensus        12 ~~~l~y~~PA~~W~ealpiGNGrlGamv~G~~~~e~i~lNe~tlWsg~p~~~~~~~~~~~l~~iR~ll~~g~~~~A~~l~   91 (613)
                      +++|||++||+.|+||||||||||||||||++.+|+|||||+|||+|+|.++.||++.+.|++||+++++|++.+|++++
T Consensus         2 ~~~lwy~~Pa~~w~eaLpiGNG~lGamv~G~~~~e~i~lne~tlW~g~p~~~~~~~~~~~l~~ir~~~~~g~~~~A~~l~   81 (803)
T 2rdy_A            2 SLKIQFDFPASFWTEALPIGNGNLGAMVFGKVEKERIALNEDTLWSGYPKDWNNPKAKEVLPKVRELIAQEKYEEADQLS   81 (803)
T ss_dssp             -CEEEESSCCSSGGGSEEEECSSEEEEECCCSSEEEEEEEETTCBSSCSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcceEeCCcccchhhhceecCCceeEEecCCCCeEEEEEcCCccCcCCCCCCCCcchHHHHHHHHHHHHCCChHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HhhcCCCCCCCccceEEEEEecCCCCccCCCCeEEEeeccccEEEEEEEeCCEEEEEEEEeecCCCEEEEEEEeCCCCce
Q 007204           92 VKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSL  171 (613)
Q Consensus        92 ~~~~g~~~~~y~~~g~L~l~~~~~~~~~~~~~Y~R~LDl~~a~~~v~~~~~g~~~~re~F~S~pd~viv~~i~a~~~~~l  171 (613)
                      +.|+|+..++|||+|+|.|+|.+....  +++|+|+|||++|+++|+|+.+|++|+|++|||+||+|||+||++++++++
T Consensus        82 ~~~~~~~~~~y~~lG~l~l~~~~~~~~--~~~y~r~LDl~~a~~~~~~~~~g~~~~re~f~s~~d~viv~~l~a~~~~~~  159 (803)
T 2rdy_A           82 RDMMGPYTQSYLPFGDLNIFMDHGQVV--APHYHRELDLSTGIVTVTYTIGGVQYTRELFVTYPDRAIVVRLTASKEGFL  159 (803)
T ss_dssp             TTSCCCCCCCBCCCEEEEEEESSCSCC--CSCCEEEEETTTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEESSTTCE
T ss_pred             HHhccCCCCCccccEEEEEecCCCCCC--ccceeEEEEccceEEEEEEEECCEEEEEEEEEecCCCEEEEEEecCCCCcE
Confidence            556787888999999999999643213  569999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeccCCCCcccccCCCeEEEEeecCCCCCCCCC--------CCCCCCCCceEEEEEEEEEeCCCeeEEEecCCeEE
Q 007204          172 SFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKA--------NANDDPKGIQFSAILEIKISDDRGTISALEDKKLK  243 (613)
Q Consensus       172 ~~~~~l~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--------~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~i~  243 (613)
                      +|+++|.++......+ +++.+++.|+.+....+.+.        ......+|++|+++++|+..|  |+++. .+++|+
T Consensus       160 ~~~~~l~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~v~~~g--g~~~~-~~~~l~  235 (803)
T 2rdy_A          160 SFRAKLDSLLRHVSSV-GAEHYTISGTAPEHVSPSYYDEENPVRYGHPDMSQGMTFHGRLAAVNEG--GSLKV-DADGLH  235 (803)
T ss_dssp             EEEEEEECSSCCEEEC---CCEEEEEECCSEECCTTCCCSSCEECCCTTTCCSCEEEEEEEEEEES--SEEEE-ETTEEE
T ss_pred             EEEEEeccCCCCceee-cCCEEEEEEEcCCCCccccccccccccccccCCCCCeEEEEEEEEEeCC--cEEEe-cCCEEE
Confidence            9999999876544333 45678899988653211000        011234789999999997666  78876 455899


Q ss_pred             EeCCcEEEEEEEEeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhccceEEecCCCCCccccc
Q 007204          244 VEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDT  323 (613)
Q Consensus       244 v~~a~~v~i~~~~~t~y~~~~~~~~~~~~d~~~~~~~~l~~a~~~~y~~l~~~H~~~~~~l~~r~~l~L~~~~~~~~~~~  323 (613)
                      |++|++|+|++++.|+|+...+ ..+.+.||.+.|.+.|+.|..++|++|+++|+++|++||+|++|+|++++.      
T Consensus       236 v~~a~~~~l~~~~~T~~~~~~~-~~~~~~d~~~~a~~~l~~a~~~~y~~L~~~H~~~w~~~w~r~~i~l~g~~~------  308 (803)
T 2rdy_A          236 VMGATCATLYFSASTSFDPSTG-ASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTKLFNRVSLHLGESIA------  308 (803)
T ss_dssp             EEEESEEEEEEEEEESEETTTT-EECTTCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTCEEECCCCCS------
T ss_pred             EECCcEEEEEEEEeecCCCccc-ccccCCCHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCceEEEeCCCcc------
Confidence            9999999999999999975311 112256899999999999988999999999999999999999999987632      


Q ss_pred             CCccccCCCChHHHHHhccCCCChHHHHHHHHHHHHHhhhcCCCCCCCCCCccccCCCCCCCCCCCceecccccchhccc
Q 007204          324 CSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQS  403 (613)
Q Consensus       324 ~~~~~~~~~pt~~rl~~~~~~~d~~L~~l~f~~gRYLlisssR~g~~P~~LqGiWn~~~~~~W~~~y~~NiN~qmnyWpa  403 (613)
                           ...+|||+|+++|+.+ ||+|++++|+|||||||||||+|++|+|||||||+++.|+|+|+||+|||+||||||+
T Consensus       309 -----~~~~~td~rl~~~~~~-d~~l~~l~~~~~rYlL~sssr~g~~P~~LqGlw~~~~~~~W~g~y~~n~N~em~ywP~  382 (803)
T 2rdy_A          309 -----PADMSTDQRIKEYGSR-DLGLVELLFQYGRYLMIASSRPGTQPANLQGIWNEETRAPWSSNYTLNINAEMNYWPA  382 (803)
T ss_dssp             -----CTTCCHHHHHHHHGGG-SHHHHHHHHHHHHHHHHHHCCTTSCCCBTTBTCCCCTTCGGGGCEETTTHHHHHTTTT
T ss_pred             -----cccCChHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccCCCCCCCCCCccceeehhhhhhHhhh
Confidence                 3579999999999877 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCchHhHHHHHHHHHHhhHHHHHHHHHhcCCCCccccccCCcCCccCCC----CCCcccccCcccHHHHHHHHHHHHH
Q 007204          404 LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSAD----RGKVVWALWPMGGAWLCTHLWEHYN  479 (613)
Q Consensus       404 ~~~nl~E~~~pl~~~~~~l~~~gr~~A~~~yG~~G~~~~~~td~wg~t~p~----~~~~~~~~w~~g~aWla~~lw~~y~  479 (613)
                      +.+|+|||++|||+|++++++.||++||++||++||++||++|+|+.+.|.    .+.+.|+.||++++|+|+|+|+||+
T Consensus       383 ~~~n~pE~~~~ll~y~~~~l~~ar~~A~~~~G~~Ga~~p~~td~w~~~~p~g~~G~~~~~~~~w~~~~awla~~lw~yy~  462 (803)
T 2rdy_A          383 ETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQTAPVGDFGHGDPVWAFWPMGGVWLTQHLWEHYT  462 (803)
T ss_dssp             TTTTCGGGGHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCSEECTTCCCSCCSGGGTSCHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEeeccccccccCCccccCCCCcccccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999885    2346789999999999999999999


Q ss_pred             hcCCHHHHhhhhHHHHHHHHHHHHHhccccCCCeEEeCCCCCCCCcccCCCCCcceeecCchHHHHHHHHHHHHHHHHHH
Q 007204          480 YTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAE  559 (613)
Q Consensus       480 ~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~  559 (613)
                      ||+|++||++++||+|+++|+||+++++++++|+|++.|++|||+.+..| |+....+.|++||++++|++|+.++++++
T Consensus       463 ~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~~g~y~i~p~~sPE~~~~~~-g~~~~~~~n~tytn~~~~~~l~~a~~a~~  541 (803)
T 2rdy_A          463 FGEDEAYLRDTAYPIMKEAALFCLDWLIENEAGYLVTSPSTSPEQRFRIG-EKGYAVSSATTMDLSLIAECFDNCIQAAK  541 (803)
T ss_dssp             HHCCHHHHHHTHHHHHHHHHHHHHHHCEECTTSCEECSSBCBTTBCEEET-TEEECCBSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhCCHHHHHhhchHHHHHHHHHHHHhhEECCCCcEEECCCCcccccccCC-CcccccccChHHHHHHHHHHHHHHHHHHH
Confidence            99999999998999999999999999998889999999999999987666 66567899999999999999999999999


Q ss_pred             HhCCCChHHHHHHHHHhCCCCCCCCCCCCCccccccccccC
Q 007204          560 VLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQRRLNT  600 (613)
Q Consensus       560 ~Lg~~~~~~~~~w~~~~~~L~p~~i~~~G~l~EW~~d~~~~  600 (613)
                      +||++ ++++++|++++++|+||+|+++|+|+||.+|+.+.
T Consensus       542 ~Lg~~-~~~~~~w~~~~~~L~p~~i~~~G~l~ew~~d~~~~  581 (803)
T 2rdy_A          542 RLSID-EDFVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDE  581 (803)
T ss_dssp             HTTCC-HHHHHHHHHHHHTBCCCCBCTTSCBCSSSSCCEES
T ss_pred             HHCcC-HHHHHHHHHHHhcCCCCccCCCCceeecccccccC
Confidence            99995 56789999999999999999999999999876553

PyMOL of 2rdy

>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*	Back alignment and structure

>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3	Back alignment and structure

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*	Back alignment and structure

>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*	Back alignment and structure

>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}	Back alignment and structure

>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8	Back alignment and structure

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}	Back alignment and structure

>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A	Back alignment and structure

>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*	Back alignment and structure

>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*	Back alignment and structure

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		613
d1h54a1		485	a.102.1.4 (A:269-753) Lactobacillus maltose phosph	2e-51

>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]} Length = 485	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

 Score =  182 bits (462), Expect = 2e-51
 Identities = 34/337 (10%), Positives = 91/337 (27%), Gaps = 51/337 (15%)

Query: 269 DSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEEN 328
           D+++  T+        +   SY DL   H   + + + +  + +    +           
Sbjct: 1   DTQESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDDES---------- 50

Query: 329 IDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANL--QGIWNEDLSPTW 386
                                 +   +F  + L S+        N+  +G   E     +
Sbjct: 51  ----------------------QQGIRFNLFQLFSTYYGEDARLNIGPKGFTGEK----Y 84

Query: 387 DSAPHVNINLEMNYWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKT 445
                   + E   +   L     +    L  +           AQ   L  G +    T
Sbjct: 85  G--GATYWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLK-GALFPMVT 141

Query: 446 DIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 505
               +   +    +          +   ++ +  YT D  ++      +L   + F  D 
Sbjct: 142 FDGIECHNEWE--ITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADR 199

Query: 506 LI-EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKN 564
           +     +     +  T  +      D        +       +  +       A+ L+ +
Sbjct: 200 VHFSKRNNQYMIHGVTGADEYENNVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVS 259

Query: 565 ED------ALVEKVLKSLPRLRPTKIAEDGSIMEWVQ 595
           ++       +V+++     +     +  DG + + ++
Sbjct: 260 DEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIE 296

PyMOL of d1h54a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		613
d1h54a1		485	Lactobacillus maltose phosphorylase, central domai	100.0
d1v7wa1		531	Chitobiose phosphorylase ChbP {Vibrio proteolyticu	99.06
d2d5ja1		377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	92.18
d1h54a2		268	Lactobacillus maltose phosphorylase, N-terminal do	90.2

>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=3.2e-44  Score=394.15  Aligned_cols=281  Identities=12%  Similarity=0.039  Sum_probs=236.5

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhccceEEecCCCCCcccccCCccccCCCChHHHHHhccCCCChHHHHHH
Q 007204          274 PTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELL  353 (613)
Q Consensus       274 ~~~~~~~~l~~a~~~~y~~l~~~H~~~~~~l~~r~~l~L~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~l~  353 (613)
                      +.+++.+.++++.+++|++|+++|+++|++||+|++|+|++++                    +            .+++
T Consensus         6 ~~~~~~~~~~~a~~~~y~~L~~~h~~~w~~~~~r~~i~l~~d~--------------------~------------l~~~   53 (485)
T d1h54a1           6 LTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDD--------------------E------------SQQG   53 (485)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCEEEESCH--------------------H------------HHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCceEEeCCCH--------------------H------------HHHH
Confidence            3445566778899999999999999999999999999997542                    1            2356


Q ss_pred             HHHHHHHhhhcCCCCCCCCCC--ccccCCCCCCCCCCCceecccccchhccccc-CCchHhHHHHHHHHHHhhHHHHHHH
Q 007204          354 FQFGRYLLISSSRPGTQVANL--QGIWNEDLSPTWDSAPHVNINLEMNYWQSLP-CNLSECQEPLFDFLTYLSINGSKTA  430 (613)
Q Consensus       354 f~~gRYLlisssR~g~~P~~L--qGiWn~~~~~~W~~~y~~NiN~qmnyWpa~~-~nl~E~~~pl~~~~~~l~~~gr~~A  430 (613)
                      |+++||+|+||+|++..|.++  ||||++    .|.|.++|  |+||+|||... +|+|||++++++|+.++++.+|++|
T Consensus        54 ~~~~~Y~l~~s~~~~~~~~~~~~~Gl~~~----~~~G~~~w--d~~~~~~p~~l~~~~pe~~~~~~~~~~~~l~~ar~~A  127 (485)
T d1h54a1          54 IRFNLFQLFSTYYGEDARLNIGPKGFTGE----KYGGATYW--DTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINA  127 (485)
T ss_dssp             HHHHHHHHHHHCCSSCTTCCCCTTTTSCC----TTCSSBCT--HHHHTHHHHHHHHSCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCCCC----CCCCccch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999988888776  999996    58887776  89999999975 6999999999999999999999999


Q ss_pred             HHhcCCCCccccccCCcCCccCCCCCCcccccCcccHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccC
Q 007204          431 QVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH  510 (613)
Q Consensus       431 ~~~yG~~G~~~~~~td~wg~t~p~~~~~~~~~w~~g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~  510 (613)
                      ++ |||+|+++|+.++.++...+.  .+.+..+...++|+++++|+||+||+|++||++++||+||++|+||+++|+.++
T Consensus       128 ~~-~g~~G~~~p~~~~~~~~~~~~--~~~~~~~~~~~~wi~~~~~~yy~~TgD~~~L~e~~~pll~e~a~F~~~~l~~~~  204 (485)
T d1h54a1         128 QE-QGLKGALFPMVTFDGIECHNE--WEITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHFSK  204 (485)
T ss_dssp             HT-TTCCSCCCCSSBSSSSBCCCC--HHHHTTCTHHHHHHHHHHHHHHHHHCCCTTTTTHHHHHHHHHHHHHHHHCEEET
T ss_pred             HH-hccCCCccceeCCCCCCCCCC--CCCcccccccchHHHHHHHHHHHhcCcHHHHHhcccHHHHHHHHHHHhheEEeC
Confidence            97 899999999999888776543  234455667789999999999999999999999999999999999999998754


Q ss_pred             -CCeEEeCCCCCCCCcccCCCCCcceeecCchHHHHHHHHHHHHHHH--------HHHHhCCCChHHHHHHHHHhCCCCC
Q 007204          511 -DGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIIS--------AAEVLEKNEDALVEKVLKSLPRLRP  581 (613)
Q Consensus       511 -~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~--------a~~~Lg~~~~~~~~~w~~~~~~L~p  581 (613)
                       +|+|++.|+.|||+...        ...|+.+++.++...+..+++        +++.||++ ++..++|+++++||+.
T Consensus       205 ~~g~~~~~~~~~p~~~~~--------~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~l~~~-~~~~~~w~~~~~~L~~  275 (485)
T d1h54a1         205 RNNQYMIHGVTGADEYEN--------NVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVS-DEEKTKWQDIVDRMYL  275 (485)
T ss_dssp             TTTEEECCSBCCSSTTSC--------SBSCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHCCC-HHHHHHHHHHHHTBCC
T ss_pred             CCCeEecCCCCccccccc--------ccCCCcceehHHHHHHHHHHHHHHHhHHHHHHHhCCC-HHHHHHHHHHHhcCCC
Confidence             89999999999987421        256788888888888877765        67899985 5678999999999963


Q ss_pred             C-------CCCCCCCccccccccccCCCCC
Q 007204          582 T-------KIAEDGSIMEWVQRRLNTSFST  604 (613)
Q Consensus       582 ~-------~i~~~G~l~EW~~d~~~~~~~~  604 (613)
                      +       .++.+|+|+||.+++......+
T Consensus       276 p~~~~~g~~~~~dG~~~~~~~~~~~~~~~~  305 (485)
T d1h54a1         276 PYDKDLNIFVQHDGFLDKDIEPVSSIPADQ  305 (485)
T ss_dssp             CEETTTTEECSSTTGGGSCCCCGGGSCGGG
T ss_pred             CCCcCCCccccccceeecccccccccCccc
Confidence            2       3567999999998876654433

PyMOL of d1h54a1

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}	Back information, alignment and structure

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}	Back information, alignment and structure

>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase, N-terminal domain {Lactobacillus brevis [TaxId: 1580]}	Back information, alignment and structure