Citrus Sinensis ID: 007207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610---
Protein Sequence
MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVRCSAI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEcEEEEEEEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEEccEEEEEEEEEcHHHHHHccccccccccccccccEEEEEcccccccEEEEEEEEEEEEEEcccEEEEEEEEccccccccccccccccEEEEEEEEccccEEEEEcccccccEEEEEcccEEEEEEEccccccccccEEEEEEEccccccccEEEEcccccccccccEEEEEEccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEEEEcccEEEcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEEEEccccccccEEEccccccccccccEEEEEEEccccccEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccHcEEEEcccccccccccccccccccccHHHHcccccEEEEEEcccccccccccccccccEcccccccccEEccccEEEEEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEcccccEEEEEEEEEccHHHHHHHHHHHHHccccccccEEEcccccccEEEEEEcccccccEEEEEEEEEEHHHHHcccEEEEEEEEcccHcccccccccccEEEEEEEccccccEEEEcccccccHHHccEcccccccHcccccccccccEEEEEEEccccccccEEEccccccccccccEEEEEEccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccEEEEEEcccEEEcccccHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHcccHEEEEEEccccccEEEcccccccHHccccEEEEEEEEccccccEEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MADDFVKAVEDGLKLSKrlyfgkdrpvtppkvpssmdksgavdmllpkspmvyavitdpkivdnpdipsyqpyvhgrcdppsliplqmnaveldvdcyldtafvrVSGTWRVHcvmgskscdcriavpmgdqgsilGVEAEISGKSYHTQLIALgendgagksasvetgsflkpniftltlpqidggsyLSIRLRWSqklsyrdgefsvnvpfkfpeyvtpaikkipkrekihlnvnagtgteVLCNTSSHHLKQLRRDVGKLGYSYESEvlkwsnidfdfsytvspshifggvllqspslhdvdqREMFCMyllpgtaksrkvFKKDVIFIVDIsgsmqgkpleDTKNALAVALskldpgdsfnivafngetylFSTSMELATKEAVERAHQWIGINfiaggstnicAPLTKAVEMLtnsrgsipiiflvtdgaveDERQICDAMKsrltnggsicpriytfgigsyCNHYFLRMLAMISRGyygaaydldSIEIQMQKLFTRGFSSVLANIAIDTlkdldefemypsripdlssesplivsgryqgkfpdtlkakgflgdLSNFVVELKLQLakdipldrICAKQQIDLLTAQAWFSEDKRLEEKVRCSAI
Flexible Loop (DISEMBL)
MADDFVKAVEDGlklskrlyfgkdrpvtppkvpssmdksGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSyrdgefsvnvpfkfpeyVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPgtaksrkvFKKDVIFIVDisgsmqgkplEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMksrltnggsiCPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPsripdlssesplIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAqawfsedkrleekvrcsai
Low Complexity Region (SEG)
MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVRCSAI
Disordered region (IsUnstruct)
******************LYF***********************LLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGEN********VETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSM********KNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRI*******PLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFS**************
Disordered Region (DISOPRED)
****FVKAVEDGLKLSKRLY**************************PKSPMVYAVITDP**************************LQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALG********************IFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGT*****************************LKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNF**********DIPLDRICAKQQIDLL**************KVRCSAI
Disordered Region (DISEMBL)
********VEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDK***********
Disordered Region (DISPRO)
****FVKAVEDGLKLSKRLYFGKDR*****************DMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG*SASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE*******V*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPKIVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVRCSAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	613	2.2.26 [Sep-21-2011]
A6X935	942	Inter alpha-trypsin inhib	yes	no	0.368	0.239	0.298	5e-18
P97278	914	Inter-alpha-trypsin inhib	N/A	no	0.424	0.284	0.244	3e-17
Q54DU5	932	von Willebrand factor A d	yes	no	0.293	0.193	0.306	6e-17
P56652	891	Inter-alpha-trypsin inhib	yes	no	0.386	0.265	0.258	2e-16
Q9GLY5	903	Inter-alpha-trypsin inhib	no	no	0.388	0.263	0.270	3e-16
Q14624	930	Inter-alpha-trypsin inhib	yes	no	0.381	0.251	0.267	8e-16
Q61704	889	Inter-alpha-trypsin inhib	no	no	0.401	0.276	0.251	8e-16
Q29052	902	Inter-alpha-trypsin inhib	no	no	0.296	0.201	0.281	2e-15
Q06033	890	Inter-alpha-trypsin inhib	no	no	0.388	0.267	0.270	2e-15
Q5RB37	876	Inter-alpha-trypsin inhib	no	no	0.386	0.270	0.258	3e-15

>sp|A6X935|ITIH4_MOUSE Inter alpha-trypsin inhibitor, heavy chain 4 OS=Mus musculus GN=Itih4 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 15/241 (6%)

Query: 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKE 386
           K+VIF++D SGSM GK ++ T+ AL   L  L P D FN++ F+GE   +  S+  AT+E
Sbjct: 273 KNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNLIEFSGEANQWKQSLVQATEE 332

Query: 387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR-------GSIPIIFLVTDG---AV 436
            + +A  +      A G TNI   +  AVE+L  S         S+ +I L+TDG     
Sbjct: 333 NLNKAVNYAS-RIRAHGGTNINNAVLLAVELLDRSNQAELLPSKSVSLIILLTDGDPTVG 391

Query: 437 EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEI 496
           E    I         NG      ++  G G   N+ FL  +A+ + G     Y+     +
Sbjct: 392 ETNPTIIQNNVREAINGQY---SLFCLGFGFDVNYPFLEKMALDNGGLARRIYEDSDSAL 448

Query: 497 QMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKA 556
           Q+Q  +    + +L+++A +   D  E E+   +       S ++V+G+ Q + PD L A
Sbjct: 449 QLQDFYHEVANPLLSSVAFEYPSDAVE-EVTRYKFQHHFKGSEMVVAGKLQDQGPDVLLA 507

Query: 557 K 557
           K
Sbjct: 508 K 508

Type II acute-phase protein (APP) involved in inflammatory responses to trauma. May also play a role in liver development or regeneration.
Mus musculus (taxid: 10090)

>sp|P97278|ITIH1_MESAU Inter-alpha-trypsin inhibitor heavy chain H1 OS=Mesocricetus auratus GN=ITIH1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 38/298 (12%)

Query: 274 WSNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIV 333
           W N DF  +Y V+   +   ++  +           F  +  P   K+     K+++F++
Sbjct: 254 WLNGDFKVTYDVNRDKLCDLLVANN----------YFAHFFAP---KNLTNMSKNLVFVI 300

Query: 334 DISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQ 393
           DISGSM+G+ ++ TK AL   L  + PGDSF++V F      +  S+  AT+  ++ A  
Sbjct: 301 DISGSMEGQKVKQTKEALLKILGDVKPGDSFDLVLFGSRVQSWKGSLVPATQANLQAAQD 360

Query: 394 WIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP-------IIFLVTDG----AVEDERQI 442
           ++   F   G+TN+   L + +E+L  ++GS P       I+ ++TDG       D  QI
Sbjct: 361 FVR-RFSLAGATNLNGGLLRGIEILNKAQGSHPELSSPASILIMLTDGEPTEGETDRSQI 419

Query: 443 C----DAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQM 498
                +A++ R          +Y  G G   +  FL +++M + G+    Y+      Q+
Sbjct: 420 LKNVRNAIRGRFP--------LYNLGFGHDLDFNFLEVMSMENSGWAQRIYEDHDATQQL 471

Query: 499 QKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKA 556
           Q  + +  + +L ++ +   +D     +   R       S ++V+GR       T KA
Sbjct: 472 QGFYNQVANPLLTDVELQYPQD-SVLSLTQHRHKQYYDGSEIVVAGRIADHKLSTFKA 528

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Mesocricetus auratus (taxid: 10036)

>sp|Q54DU5|Y2028_DICDI von Willebrand factor A domain-containing protein DDB_G0292028 OS=Dictyostelium discoideum GN=DDB_G0292028 PE=4 SV=1

 Score = 89.7 bits (221), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 16/196 (8%)

Query: 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGE-TYLFSTSMELAT 384
           K + IF++D SGSM GKP+E +K AL + +  L+    FNIV F      LF TS     
Sbjct: 340 KSEFIFVLDCSGSMSGKPIEKSKMALEICMRSLNENSKFNIVCFGSNFNKLFETSKHY-N 398

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP----IIFLVTDGAVEDER 440
            E +++A ++I       G T +  P+   V++L  S+ S P     +F++TDG + +  
Sbjct: 399 DETLQKASEYINRIDANLGGTELLEPI---VDIL--SKESDPEFPRQVFILTDGEISNRD 453

Query: 441 QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQK 500
           ++ D +            RI+T+GIGSY +   +  ++   +GYY    D   +E ++ K
Sbjct: 454 KLIDYVGKEANTT-----RIFTYGIGSYVDKELIVGVSKACKGYYEMIVDNSDMEEKVMK 508

Query: 501 LFTRGFSSVLANIAID 516
           L +      L+NI +D
Sbjct: 509 LISIAMQPTLSNIKVD 524

Dictyostelium discoideum (taxid: 44689)

>sp|P56652|ITIH3_BOVIN Inter-alpha-trypsin inhibitor heavy chain H3 OS=Bos taurus GN=ITIH3 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 34/271 (12%)

Query: 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELA 383
           V  K V+F++D+SGSM G+ +E TK+AL   L  +   D  N + F+G+   +  S+  A
Sbjct: 280 VVPKSVVFVIDVSGSMHGRKMEQTKDALLKILEDVKQDDYLNFILFSGDVTTWKDSLVPA 339

Query: 384 TKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRG-------SIPIIFLVTDGAV 436
           T E ++ A +++ ++    G TNI   L + + ML  +R        S  II ++TDG  
Sbjct: 340 TPENIQEASKFV-MDIQDRGMTNINDALLRGISMLNKAREEHTVPERSTSIIIMLTDGDA 398

Query: 437 EDERQICDAMKSRLTNG-GSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIE 495
                  + ++  + N  G   P +Y  G G+  N+ FL  +A+ + G     Y+     
Sbjct: 399 NVGESRPEKIQENVRNAIGGKFP-LYNLGFGNNLNYNFLENMALENHGLARRIYEDSDAN 457

Query: 496 IQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSR-IPDLSSE--------SPLIVSGRY 546
           +Q+Q  +    + +L  + ++          YP   I DL+          S ++V+GR 
Sbjct: 458 LQLQGFYEEVANPLLTGVEVE----------YPQNAILDLTQNSYQHFYDGSEIVVAGRL 507

Query: 547 ----QGKFPDTLKAKGFLGDLSNFVVELKLQ 573
                  F   +K  G + DL+ F  E+ ++
Sbjct: 508 ADEDMNSFKAAVKGHGAINDLT-FTEEVDMK 537

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Bos taurus (taxid: 9913)

>sp|Q9GLY5|ITIH3_RABIT Inter-alpha-trypsin inhibitor heavy chain H3 OS=Oryctolagus cuniculus GN=ITIH3 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 32/270 (11%)

Query: 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELA 383
           V  K+V+F++D+SGSM G+ LE TK+AL   L  +   D  N + F+ +   +   +  A
Sbjct: 280 VVPKNVVFVIDVSGSMYGRKLEQTKDALLKILEDMREEDHLNFILFSSDVTTWKEHLVQA 339

Query: 384 TKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRG-------SIPIIFLVTDGAV 436
           T E ++ A  ++  +    GSTN+   L + + ML  +R        S  I+ ++TDG  
Sbjct: 340 TPENLQEARAFVK-SIQDQGSTNLNDGLLRGISMLNTAREEHRVPERSTSIVIMLTDGDA 398

Query: 437 EDERQICDAMKSRLTNG-GSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIE 495
                  + ++  + N  G   P +Y  G G+  N+ FL  LA+ + G+    Y+     
Sbjct: 399 NSGESRPEKIQENVRNAIGGKFP-LYNLGFGNNLNYNFLESLALENDGFARRIYEDSDAN 457

Query: 496 IQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSE--------SPLIVSGRY- 546
           +Q+      GF   +AN  + ++    E E   + I DL+          S ++V+GR  
Sbjct: 458 LQLH-----GFYEEVANPLLTSV----EMEYPKNAILDLTQNSYQHFYDGSEIVVAGRLA 508

Query: 547 ---QGKFPDTLKAKGFLGDLSNFVVELKLQ 573
                 F   +K  G L DL+ F  E+ L+
Sbjct: 509 DEDMNSFKADVKGHGALNDLT-FTEEVDLK 537

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q14624|ITIH4_HUMAN Inter-alpha-trypsin inhibitor heavy chain H4 OS=Homo sapiens GN=ITIH4 PE=1 SV=4

 Score = 85.9 bits (211), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 123/262 (46%), Gaps = 28/262 (10%)

Query: 310 FCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAF 369
           F  Y  P   +      K+V+F++D SGSM G+ ++ T+ AL   L  L P D FN++ F
Sbjct: 259 FVHYFAP---EGLTTMPKNVVFVIDKSGSMSGRKIQQTREALIKILDDLSPRDQFNLIVF 315

Query: 370 NGETYLFSTSMELATKEAVERAHQWIGINFIAG----GSTNICAPLTKAVEMLTNS---- 421
           + E   +  S+  A+ E V +A      +F AG    G TNI   +  AV++L +S    
Sbjct: 316 STEATQWRPSLVPASAENVNKAR-----SFAAGIQALGGTNINDAMLMAVQLLDSSNQEE 370

Query: 422 ---RGSIPIIFLVTDG----AVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL 474
               GS+ +I L+TDG       + R I + ++  ++   S    ++  G G   ++ FL
Sbjct: 371 RLPEGSVSLIILLTDGDPTVGETNPRSIQNNVREAVSGRYS----LFCLGFGFDVSYAFL 426

Query: 475 RMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDL 534
             LA+ + G     ++     +Q+Q  +    + +L  +  +   +  E E+  +    L
Sbjct: 427 EKLALDNGGLARRIHEDSDSALQLQDFYQEVANPLLTAVTFEYPSNAVE-EVTQNNFRLL 485

Query: 535 SSESPLIVSGRYQGKFPDTLKA 556
              S ++V+G+ Q + PD L A
Sbjct: 486 FKGSEMVVAGKLQDRGPDVLTA 507

May be involved in acute phase reactions.

Homo sapiens (taxid: 9606)

>sp|Q61704|ITIH3_MOUSE Inter-alpha-trypsin inhibitor heavy chain H3 OS=Mus musculus GN=Itih3 PE=1 SV=3

 Score = 85.9 bits (211), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 16/262 (6%)

Query: 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELA 383
           V  K+++F++D+SGSM G+ ++ T+ AL   L  +   D  N + F+ +   +   +  A
Sbjct: 280 VVPKNIVFVIDVSGSMSGRKIQQTREALLKILDDVKEDDYLNFILFSTDVTTWKDHLVQA 339

Query: 384 TKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRG-------SIPIIFLVTDGAV 436
           T   ++ A  ++  N      TNI   L K +EML  +R        S  II ++TDG  
Sbjct: 340 TPANLKEAKTFVK-NIHDQSMTNINDGLLKGIEMLNKAREDHTVPERSTSIIIMLTDGDA 398

Query: 437 EDERQICDAMKSRLTNG-GSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIE 495
                  + ++  + N  G   P +Y  G G+  N+ FL  LA+ + G     Y+     
Sbjct: 399 NTGESRPEKIQENVRNAIGGKFP-LYNLGFGNNLNYNFLETLALENHGLARRIYEDSDAN 457

Query: 496 IQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLK 555
           +Q+Q  +    + +L N+ ++  ++    ++  +  P     S ++V+GR   +  D  K
Sbjct: 458 LQLQGFYEEVANPLLTNVEVEYPENAI-LDLTRNSYPHFYDGSEIVVAGRLVDRNMDNFK 516

Query: 556 A----KGFLGDLSNFVVELKLQ 573
           A     G L DL+ F  E+ ++
Sbjct: 517 ADVKGHGALNDLT-FTEEVDME 537

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Mus musculus (taxid: 10090)

>sp|Q29052|ITIH1_PIG Inter-alpha-trypsin inhibitor heavy chain H1 OS=Sus scrofa GN=ITIH1 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 24/206 (11%)

Query: 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELAT 384
             K+V+F++DIS SM+G+ ++ TK AL   LS L PGD F++V F      +  S+  A+
Sbjct: 281 LNKNVVFVIDISSSMEGQKVKQTKEALLKILSDLKPGDYFDLVLFGSAVQSWRGSLVQAS 340

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP-------IIFLVTDG--- 434
              ++ A  ++   F   GSTN+   L + +E+L  ++GS+P       I+ ++TDG   
Sbjct: 341 TANLDAARSYVR-QFSLAGSTNLNGGLLRGIEILNKAQGSLPEFSNRASILIMLTDGEPT 399

Query: 435 -AVEDERQIC----DAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAY 489
             V D  QI     DA++ R          +Y  G G      FL + A+ + G     Y
Sbjct: 400 EGVTDRSQILKNVRDAIRGRFP--------LYNLGFGHDVEWNFLEVRALENNGRAQRIY 451

Query: 490 DLDSIEIQMQKLFTRGFSSVLANIAI 515
           +      Q+Q  + +  + +L ++ +
Sbjct: 452 EDHDSAQQLQGFYDQVANPLLKDVEL 477

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Sus scrofa (taxid: 9823)

>sp|Q06033|ITIH3_HUMAN Inter-alpha-trypsin inhibitor heavy chain H3 OS=Homo sapiens GN=ITIH3 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 122/270 (45%), Gaps = 32/270 (11%)

Query: 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELA 383
           V  K+V F++DISGSM G+ LE TK AL   L  +   D  N + F+G+   +   +  A
Sbjct: 280 VVPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMQEEDYLNFILFSGDVSTWKEHLVQA 339

Query: 384 TKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRG-------SIPIIFLVTDGAV 436
           T E ++ A  ++  +    G TNI   L + + ML  +R        S  I+ ++TDG  
Sbjct: 340 TPENLQEARTFVK-SMEDKGMTNINDGLLRGISMLNKAREEHRIPERSTSIVIMLTDGDA 398

Query: 437 EDERQICDAMKSRLTNG-GSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIE 495
                  + ++  + N  G   P +Y  G G+  N+ FL  +A+ + G+    Y+    +
Sbjct: 399 NVGESRPEKIQENVRNAIGGKFP-LYNLGFGNNLNYNFLENMALENHGFARRIYEDSDAD 457

Query: 496 IQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSE--------SPLIVSGRY- 546
           +Q+Q     GF   +AN  +  +    E E   + I DL+          S ++V+GR  
Sbjct: 458 LQLQ-----GFYEEVANPLLTGV----EMEYPENAILDLTQNTYQHFYDGSEIVVAGRLV 508

Query: 547 ---QGKFPDTLKAKGFLGDLSNFVVELKLQ 573
                 F   +K  G   DL+ F  E+ ++
Sbjct: 509 DEDMNSFKADVKGHGATNDLT-FTEEVDMK 537

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Homo sapiens (taxid: 9606)

>sp|Q5RB37|ITIH3_PONAB Inter-alpha-trypsin inhibitor heavy chain H3 OS=Pongo abelii GN=ITIH3 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 34/271 (12%)

Query: 324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELA 383
           V  K+V F++DISGSM G+ LE TK AL   L  +   D  N + F+G+   +   +  A
Sbjct: 277 VVPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMKKEDYLNFILFSGDVSTWKEHLVQA 336

Query: 384 TKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRG-------SIPIIFLVTDGAV 436
           T E ++ A  ++  +    G TNI   L + + ML  +R        S  I+ ++TDG  
Sbjct: 337 TPENLQEARTFVK-SMEDKGMTNINDGLLRGISMLNKAREEHRVPERSTSIVIMLTDGDA 395

Query: 437 EDERQICDAMKSRLTNG-GSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIE 495
                  + ++  + N  G   P +Y  G G+  N+ FL  +A+ + G+    Y+    +
Sbjct: 396 NVGESRPEKIQENVRNAIGGKFP-LYNLGFGNNLNYNFLENMALENHGFARRIYEDSDAD 454

Query: 496 IQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSR-IPDLSSE--------SPLIVSGRY 546
           +Q+Q  +    + +L  + ++          YP   I DL+          S ++V+GR 
Sbjct: 455 LQLQGFYEEVANPLLTGVEVE----------YPENAILDLTQNTYQHFYDGSEIVVAGRL 504

Query: 547 ----QGKFPDTLKAKGFLGDLSNFVVELKLQ 573
                  F   +K  G   DL+ F  E+ ++
Sbjct: 505 VDEDMNSFKADVKGHGATNDLT-FTEEVDMK 534

May act as a carrier of hyaluronan in serum or as a binding protein between hyaluronan and other matrix protein, including those on cell surfaces in tissues to regulate the localization, synthesis and degradation of hyaluronan which are essential to cells undergoing biological processes.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	613
224142781	751	predicted protein [Populus trichocarpa]	0.988	0.806	0.699	0.0
255550407	755	inter-alpha-trypsin inhibitor heavy chai	0.988	0.802	0.672	0.0
225444686	756	PREDICTED: inter-alpha-trypsin inhibitor	0.986	0.800	0.684	0.0
30686226	754	inter-alpha-trypsin inhibitor heavy chai	0.991	0.806	0.643	0.0
225442075	747	PREDICTED: uncharacterized protein LOC10	0.990	0.812	0.629	0.0
297844874	755	hypothetical protein ARALYDRAFT_472131 [	0.991	0.805	0.623	0.0
356565764	754	PREDICTED: uncharacterized protein LOC10	0.988	0.803	0.659	0.0
356547946	754	PREDICTED: uncharacterized protein LOC10	0.988	0.803	0.657	0.0
8778285	736	F14D16.26 [Arabidopsis thaliana]	0.962	0.801	0.618	0.0
357450103	751	Inter-alpha-trypsin inhibitor heavy chai	0.986	0.805	0.621	0.0

>gi|224142781|ref|XP_002324729.1| predicted protein [Populus trichocarpa] gi|222866163|gb|EEF03294.1| predicted protein [Populus trichocarpa]

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/608 (69%), Positives = 507/608 (83%), Gaps = 2/608 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA++F ++V+DGLKLSKR+Y GKDR VTPPK PS MDKS      LP +PMVYAVI++P 
Sbjct: 1   MAEEFGRSVQDGLKLSKRIYLGKDRAVTPPKPPSHMDKSPVA--YLPTAPMVYAVISNPA 58

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPDIPSYQP+VHGRCDPP+LIPLQM  +EL+ D YLDTAFV++SG+WRVHCVMGS+S
Sbjct: 59  IVDNPDIPSYQPHVHGRCDPPALIPLQMTRIELEADSYLDTAFVKISGSWRVHCVMGSES 118

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCR+AVPMG+QGSILGVE E S K Y+T+L+A+ +     K   +E G FLKP+ FT+T
Sbjct: 119 CDCRLAVPMGEQGSILGVEIEASRKLYYTELVAIEDRKDLEKEVRIENGGFLKPHTFTIT 178

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +P++DGGS LSI++RW QKL Y +GEFS+ VPF FPEYVTP +KK+P++EKI LNV  GT
Sbjct: 179 IPKVDGGSTLSIKVRWMQKLLYHNGEFSLIVPFSFPEYVTPHVKKLPRKEKIQLNVTTGT 238

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           GTE++C TSSH LK LRR+VGKLG+SYESEVL W+NIDF FSY VS SHIFGGVLLQSPS
Sbjct: 239 GTEIVCKTSSHPLKGLRREVGKLGFSYESEVLTWTNIDFTFSYAVSFSHIFGGVLLQSPS 298

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
           LHDVDQR+MFC YL PG   SRKVF+K+++F+VDISGSM+G PLE TK AL+ AL+ LD 
Sbjct: 299 LHDVDQRDMFCAYLFPGGHHSRKVFRKEIVFVVDISGSMEGAPLEGTKIALSAALTNLDS 358

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
            DSFNI+AFNGETYLFS+SMELA+++ VERA +W+ +N IAGG TNI  PL +A EML+ 
Sbjct: 359 KDSFNIIAFNGETYLFSSSMELASEDTVERAVEWMSMNLIAGGDTNILVPLKQATEMLSK 418

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           S GSIP IFLVTDGAVEDER ICD MKS +T GGSI PRI TFGIGSYCNH+FLRMLAMI
Sbjct: 419 SGGSIPFIFLVTDGAVEDERHICDIMKSHITGGGSIHPRICTFGIGSYCNHHFLRMLAMI 478

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
           SRG Y AAYD+DS+E +MQKL +R  S+++ANI I    DLDE E+YPSRIPDLSS++PL
Sbjct: 479 SRGQYDAAYDIDSVESRMQKLLSRISSTIIANITIKAFDDLDEVEVYPSRIPDLSSDNPL 538

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           IVSGR+QG FPDT+ A GF GDLSNF ++LK+Q AKDIPL  + AKQQIDLLTAQAWFSE
Sbjct: 539 IVSGRFQGNFPDTVVATGFFGDLSNFSLDLKVQKAKDIPLHSVSAKQQIDLLTAQAWFSE 598

Query: 601 DKRLEEKV 608
           +K+LEEKV
Sbjct: 599 NKQLEEKV 606

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550407|ref|XP_002516254.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis] gi|223544740|gb|EEF46256.1| inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/608 (67%), Positives = 510/608 (83%), Gaps = 2/608 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA++F  +VEDGLKLSKRLY+GKDR V PP+    M+KS   +  LP +PM+YAVI+DP 
Sbjct: 1   MAEEFGNSVEDGLKLSKRLYYGKDRAVAPPRPVVHMEKSA--EAYLPTAPMIYAVISDPS 58

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPD+PSYQP+VHGRCDPP+LIPLQMN +EL+ D +LD+A VRV+G+WRVHCVMGSKS
Sbjct: 59  IVDNPDMPSYQPHVHGRCDPPALIPLQMNRIELEADSFLDSAIVRVNGSWRVHCVMGSKS 118

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCRIA+PMG+QGSILGVE E++ KSY+T+LIA+ +     K    E G FL P IFTLT
Sbjct: 119 CDCRIAIPMGEQGSILGVEVEVARKSYYTELIAMDDKKDTEKECRPENGGFLTPQIFTLT 178

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +P++DGGS +SI++ W QKL Y DGE S+ VPF FPE+VTPA+KK+PK+EKI LNVN+GT
Sbjct: 179 IPKVDGGSSISIKVSWIQKLLYHDGELSLTVPFSFPEFVTPAVKKLPKKEKILLNVNSGT 238

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           GTEV+C T+SH LKQL+R+ GKLG+SYESEVL W++IDF  SY+VS SHIFGGV+LQSPS
Sbjct: 239 GTEVVCKTTSHPLKQLKREAGKLGFSYESEVLTWTDIDFAVSYSVSSSHIFGGVMLQSPS 298

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
            HDVDQR+MF +YL PG   + KVF+K+++FIVDISGSM+GKPLE  KNA++ AL+KL+P
Sbjct: 299 AHDVDQRDMFYLYLFPGDQPNMKVFRKEIVFIVDISGSMEGKPLEGMKNAMSGALAKLNP 358

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
            DSFNI+AFNGETYLFS+ MELAT++ VERA +W+ +NFIAGG TNI  PL +A+EM++N
Sbjct: 359 KDSFNIIAFNGETYLFSSLMELATEKTVERAVEWMNLNFIAGGGTNISVPLNQAMEMVSN 418

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           ++GS+P+IFLVTDGAVEDER ICD+MK  +   G+ICPRIYTFGIG+YCNHYFLRMLA +
Sbjct: 419 TQGSLPVIFLVTDGAVEDERHICDSMKKYVRGKGAICPRIYTFGIGTYCNHYFLRMLATV 478

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
            RG Y AAYD+DS++ +M+  F+RG S+VLAN+ IDTL DLD+ E+YPS IPDLSSES L
Sbjct: 479 CRGQYDAAYDVDSVQARMEIFFSRGLSAVLANVMIDTLDDLDDVEVYPSNIPDLSSESLL 538

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           I+SGRY G FP  +KA+G LG+LSNFVV+LK+Q  KD+P D+I AKQQIDLLTAQAW+SE
Sbjct: 539 IISGRYHGNFPGIVKAEGVLGNLSNFVVDLKIQKTKDVPFDKIFAKQQIDLLTAQAWYSE 598

Query: 601 DKRLEEKV 608
           +K+LEEKV
Sbjct: 599 NKQLEEKV 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444686|ref|XP_002277641.1| PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera] gi|297738541|emb|CBI27786.3| unnamed protein product [Vitis vinifera]

 Score =  870 bits (2248), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/608 (68%), Positives = 508/608 (83%), Gaps = 3/608 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MADDF K+VEDGLKL+KR+YFGKDR VTPPK P SMDKS      LP +PMVYAV+ DP 
Sbjct: 1   MADDFTKSVEDGLKLAKRIYFGKDRSVTPPK-PVSMDKSS--KSYLPTAPMVYAVVFDPA 57

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPDIPSYQP+V+GRCDP +LIPLQMN + L+VDCYLDTAFV ++G+WRVHCVMGS+S
Sbjct: 58  IVDNPDIPSYQPHVYGRCDPAALIPLQMNGIALEVDCYLDTAFVTLTGSWRVHCVMGSRS 117

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCR+AVPMG+QGSILGVE ++  KSY TQLI + EN    K++    G FLKP+IFTLT
Sbjct: 118 CDCRLAVPMGEQGSILGVEVDVPRKSYCTQLITMEENKDMEKASRAGDGGFLKPHIFTLT 177

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +P++DGGS LSI++RWSQKL Y DG+ ++ VPF FPEYVTPA KK+ K+EKI LNVN GT
Sbjct: 178 IPEVDGGSNLSIKVRWSQKLLYHDGQLTLIVPFHFPEYVTPAGKKVSKKEKIQLNVNCGT 237

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           G EVLC T+SH LK++RR VGKL +SYE+EVL WS+ DF FS++V  SHI G VLLQSPS
Sbjct: 238 GMEVLCKTTSHPLKEIRRQVGKLSFSYEAEVLTWSSADFTFSFSVPSSHIHGSVLLQSPS 297

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
           +HDVDQRE+FC+YL PG  ++ KVF+K+V+F+VDISGSM+GK LEDTKNAL+ ALSKLD 
Sbjct: 298 VHDVDQREIFCLYLFPGNQQTGKVFRKEVVFVVDISGSMRGKLLEDTKNALSAALSKLDS 357

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
            DSF+I+AFNGE ++FS+S++LATKEA+E A QWI +NFIAGG TNI  P+ KA+E+ ++
Sbjct: 358 KDSFSIIAFNGEIFIFSSSVQLATKEAIENAIQWISMNFIAGGDTNILLPMNKAMELFSH 417

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           S GSIPIIFL+TDG+VEDER ICD M S LTN  SI PRIYTFGIG YCNHYFL+MLAMI
Sbjct: 418 SPGSIPIIFLITDGSVEDERHICDVMTSYLTNEESIHPRIYTFGIGLYCNHYFLKMLAMI 477

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
            RG+Y AAYD +SIE+++++LFTR  S+VLANI ID L+DLD+FE+YPS +PDLSSES  
Sbjct: 478 GRGHYDAAYDANSIELRVERLFTRASSTVLANITIDDLEDLDDFEVYPSHMPDLSSESVW 537

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
            VSGRY+G FPDT++A+G   DL+NFV +LK+Q AK+IPLDR+ AKQQI  LTAQAWFSE
Sbjct: 538 TVSGRYKGNFPDTIQARGIFADLNNFVTDLKVQKAKEIPLDRVLAKQQIGWLTAQAWFSE 597

Query: 601 DKRLEEKV 608
           +K+LEEK+
Sbjct: 598 NKQLEEKI 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686226|ref|NP_173345.2| inter-alpha-trypsin inhibitor heavy chain-like protein [Arabidopsis thaliana] gi|22531102|gb|AAM97055.1| unknown protein [Arabidopsis thaliana] gi|23197960|gb|AAN15507.1| unknown protein [Arabidopsis thaliana] gi|332191682|gb|AEE29803.1| inter-alpha-trypsin inhibitor heavy chain-like protein [Arabidopsis thaliana]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/608 (64%), Positives = 486/608 (79%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA+DF +AV+DGLKL+KR+YFGKDR V  P+ P+ MD+S      LP +PMVYAVI DP 
Sbjct: 1   MAEDFARAVDDGLKLAKRIYFGKDRAVAAPRPPAPMDRSSTTQPYLPTAPMVYAVIPDPG 60

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPD+PSYQP+VHGRCDPP+LIPLQMN++ELDVDCYLDTA V V+G+WRVHCVMGSK 
Sbjct: 61  IVDNPDLPSYQPHVHGRCDPPALIPLQMNSIELDVDCYLDTALVTVTGSWRVHCVMGSKR 120

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCRIA+PMG+QGSILGVE EI  KSY TQLI   + +   K+A  ETG FLKPNIFTLT
Sbjct: 121 CDCRIAIPMGEQGSILGVEVEIPRKSYTTQLITAEDGNEFEKTALPETGGFLKPNIFTLT 180

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +PQ+DGG+ LSI++ WSQKL+Y  G+F +++PF FPEYVTPA+KKI KREKI+L+VNAGT
Sbjct: 181 IPQVDGGTNLSIKMTWSQKLTYNQGQFFLDIPFNFPEYVTPAVKKISKREKIYLSVNAGT 240

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           GTEVLC   SH LK+  R  GKL ++YE++VLKWSN DF FSYT S S+I GG+ LQS  
Sbjct: 241 GTEVLCKGCSHQLKEKLRSAGKLRFAYEADVLKWSNTDFSFSYTASSSNIVGGLFLQSAP 300

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
           +HDVDQR++F  YL PG  +  K FK++V+F+VDIS SM GKPLED KNA++ ALSKLDP
Sbjct: 301 VHDVDQRDIFSFYLFPGKQQKTKAFKREVVFVVDISKSMTGKPLEDVKNAISTALSKLDP 360

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
           GDSFNI+ F+ +T LFSTSME  T +AVER  +W+  NF+    TN+  PL KAVEML+N
Sbjct: 361 GDSFNIITFSNDTALFSTSMESVTSDAVERGIEWMNKNFVVADGTNMLPPLEKAVEMLSN 420

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           +RGSIP+IF VTDG+VEDER ICD MK  L + GS+ PRI+TFG+G +CNHYFL+MLA I
Sbjct: 421 TRGSIPMIFFVTDGSVEDERHICDVMKKHLASAGSVFPRIHTFGLGVFCNHYFLQMLANI 480

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
           S G + + Y+ D IE +M KLFT+  S++L NIAI+ L+ LDE E+YPS IPDL+S SPL
Sbjct: 481 SCGQHESVYNTDHIEERMDKLFTKALSTILVNIAIEPLQSLDEVEVYPSNIPDLTSASPL 540

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           ++ GRY+GKFP+ + AKG LGDLS+F  +L +Q AKD+PLD++ AK  IDLLTA+AWFSE
Sbjct: 541 MIYGRYRGKFPENVIAKGLLGDLSSFSTDLTVQSAKDMPLDKVFAKNVIDLLTAEAWFSE 600

Query: 601 DKRLEEKV 608
           DK+L+EK+
Sbjct: 601 DKQLKEKI 608

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442075|ref|XP_002271630.1| PREDICTED: uncharacterized protein LOC100244700 [Vitis vinifera] gi|297742983|emb|CBI35850.3| unnamed protein product [Vitis vinifera]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/608 (62%), Positives = 483/608 (79%), Gaps = 1/608 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA+DF  AVE GL+LSKR+Y+GKDR  + PK P  M+KS + +  LP +PMVYAVI +P 
Sbjct: 1   MAEDFSTAVEYGLRLSKRIYYGKDRSASAPK-PQEMEKSESQESFLPTAPMVYAVIPEPS 59

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPD+PSYQPYVHGRCDPP+LIPL M  + ++VDCYLDTAF+ VSGTWRVHCVMGS+ 
Sbjct: 60  IVDNPDVPSYQPYVHGRCDPPALIPLHMLGIAMEVDCYLDTAFISVSGTWRVHCVMGSRR 119

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCR+A+PMG+QGS+LGVE +++G+S +++LI   +    GK A  E G FL+  I+TL 
Sbjct: 120 CDCRVAIPMGEQGSVLGVEVDVTGRSCNSRLITEEDTKDNGKPAKTEDGRFLRWRIYTLK 179

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +P+++GG+ LSI+  WSQKL Y+DG+FS+ +PF FP  VTPA KKIPK+EKI LNVN+GT
Sbjct: 180 VPKVEGGTNLSIKFSWSQKLLYQDGQFSLIIPFSFPTCVTPAGKKIPKKEKIRLNVNSGT 239

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           GTE+LC  +SH LK+LR  VGKLG+ YE+EV  WS  DF+FSYTVS ++IFGG L+QSPS
Sbjct: 240 GTEILCKATSHLLKELRHQVGKLGFLYEAEVQTWSRADFNFSYTVSSNNIFGGALMQSPS 299

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
           +HD DQREMFC YL PG+  S KVF+K+V+FIVDIS SM+G+PLE+TK+A+  AL  L+ 
Sbjct: 300 VHDFDQREMFCFYLFPGSNISGKVFRKEVVFIVDISRSMRGRPLENTKDAVLAALLNLNT 359

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
            DSFNI+AFNG+T LFS++M LATKE V  A QWI  NF A G TNI  PL++A+EMLT 
Sbjct: 360 QDSFNIIAFNGDTCLFSSTMVLATKEEVGNATQWINTNFNAEGGTNILNPLSQAIEMLTK 419

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           + GS+P+IFL+TDGAVEDER IC+ ++  L N   ICPRI TFGIGSYCNHYFL+MLA I
Sbjct: 420 TSGSMPLIFLITDGAVEDERHICNVVEGHLRNRSPICPRICTFGIGSYCNHYFLQMLAQI 479

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
            RGYY AAYD DSI   MQ+LFT+  S +LANI I+TL+ LD  E++P  IPDLSS SPL
Sbjct: 480 GRGYYDAAYDADSIAFHMQRLFTKASSVILANITIETLEHLDSLELFPFHIPDLSSGSPL 539

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           I+SGRY G+FPD+LKA G L D+SNF ++LK+Q AK+IPLDR+ A++QI+LLT QAW SE
Sbjct: 540 IISGRYHGEFPDSLKASGSLADMSNFTIDLKIQKAKEIPLDRVFARRQINLLTVQAWLSE 599

Query: 601 DKRLEEKV 608
            K+LEE++
Sbjct: 600 SKQLEERI 607

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844874|ref|XP_002890318.1| hypothetical protein ARALYDRAFT_472131 [Arabidopsis lyrata subsp. lyrata] gi|297336160|gb|EFH66577.1| hypothetical protein ARALYDRAFT_472131 [Arabidopsis lyrata subsp. lyrata]

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/609 (62%), Positives = 479/609 (78%), Gaps = 1/609 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA+DF +AV+DGLKL+KR+YFGKDR V  P+ P+ M++S      LP +PMVYAVI DP 
Sbjct: 1   MAEDFARAVDDGLKLAKRIYFGKDRAVAAPRPPAPMERSSTTQSYLPTAPMVYAVIPDPG 60

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPD+PSYQP+VHGRCDPP+LIPLQMN++ELDVDCYLDTA V V+G+WRVHCVMGSK 
Sbjct: 61  IVDNPDLPSYQPHVHGRCDPPALIPLQMNSIELDVDCYLDTALVTVTGSWRVHCVMGSKR 120

Query: 121 CDCRIAVPMGDQ-GSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTL 179
           CDCRIA+PMG+Q  SILGVE EI  KSY TQLI   + +   K+A  ETG FLKPNIF L
Sbjct: 121 CDCRIAIPMGEQVCSILGVEVEIPRKSYTTQLITAEDGNEFEKTALPETGGFLKPNIFIL 180

Query: 180 TLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAG 239
           T+PQ+DGG+ LSI++ WSQKL+Y +G+F +++PF FPEYVTPA+KKI KREKI+L+VNAG
Sbjct: 181 TIPQVDGGTNLSIKMTWSQKLTYNEGQFFLDIPFNFPEYVTPAVKKISKREKIYLSVNAG 240

Query: 240 TGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSP 299
           TGTEVLC   SH LK+  R  GKL + YE++VLKWSN DF FSYT S S+I GG+ LQS 
Sbjct: 241 TGTEVLCKGCSHQLKEKLRSAGKLRFVYEADVLKWSNTDFSFSYTASSSNIVGGLFLQSA 300

Query: 300 SLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD 359
            +HD DQR++F  YL PG  +  K FK++V+F+VDIS SM GKPLED  NA++ ALSKL 
Sbjct: 301 PVHDDDQRDVFSFYLFPGKQQKTKAFKREVVFVVDISKSMTGKPLEDVNNAISTALSKLS 360

Query: 360 PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLT 419
           PGDSFNI+ F+ +T LFSTSME  T +AVER  +W+  NF+    TN+  PL KAVEML+
Sbjct: 361 PGDSFNIITFSDDTSLFSTSMESVTSDAVERGIEWMNKNFVVADGTNMLLPLEKAVEMLS 420

Query: 420 NSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM 479
           N+RGSIP+IF VTDG+VEDER ICD MK  L + GS+CPRI+TFG+G +CNHYFL++LA 
Sbjct: 421 NTRGSIPMIFFVTDGSVEDERHICDVMKKHLASAGSVCPRIHTFGLGIFCNHYFLQILAN 480

Query: 480 ISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESP 539
           +S G + + Y+ D IE +M KLFT+  S++L NI I+ L+ LDE E+YPS IPDL+S SP
Sbjct: 481 LSCGQHESVYNTDHIEERMDKLFTKALSTILVNITIEPLQSLDEVEVYPSNIPDLTSASP 540

Query: 540 LIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFS 599
           L++ GRY+GKFP+ + AKG LGDLS+F  +L ++ AKD+PLD++ AK  IDLLTA+ W S
Sbjct: 541 LMIYGRYRGKFPENVIAKGLLGDLSSFSTDLTVRSAKDMPLDKVFAKNVIDLLTAEVWLS 600

Query: 600 EDKRLEEKV 608
           EDK+L+EK+
Sbjct: 601 EDKQLKEKI 609

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565764|ref|XP_003551107.1| PREDICTED: uncharacterized protein LOC100777542 [Glycine max]

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/608 (65%), Positives = 489/608 (80%), Gaps = 2/608 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA DF KAV+DGLKLSKR+YFGKDR V PPK P  M +S      LP +PMVYAVI+DP 
Sbjct: 1   MAQDFSKAVDDGLKLSKRIYFGKDRAVAPPKPPPPMTRSATA--FLPSAPMVYAVISDPG 58

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPDIPSYQP+V+GRCDPP+LIPLQMNA++++ DCY +TAF+ VSGTWR+HCVMGS+S
Sbjct: 59  IVDNPDIPSYQPHVYGRCDPPALIPLQMNAIQMEADCYHETAFITVSGTWRLHCVMGSRS 118

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCRIAVP+  QGSILGVE  +S KSY TQL+ + +++G   ++  + G FL P+IFTLT
Sbjct: 119 CDCRIAVPVSHQGSILGVEVSVSRKSYSTQLVVMEDDNGNQNASPPQNGGFLIPDIFTLT 178

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +PQIDGGS LSI++RWSQK+ +  G+FS+NVPF FP++V PA KKI KREKI +NV+A T
Sbjct: 179 IPQIDGGSNLSIKVRWSQKIVFSKGQFSLNVPFTFPDFVNPAGKKISKREKIQINVDAVT 238

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           G E+LC T SH LK++RR VG +G+ Y+S+VL WS +DF FSY VS SHI GGVLL+S S
Sbjct: 239 GGELLCKTLSHPLKEVRRHVGSMGFLYDSDVLSWSKVDFSFSYAVSSSHITGGVLLESAS 298

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
           +HD DQREMF MYL  G  +S KVFKKD+IFI+DISGSM+GK +EDTKNAL  ALSKL+ 
Sbjct: 299 VHDFDQREMFYMYLSTGDIQSDKVFKKDIIFIIDISGSMRGKLIEDTKNALLTALSKLNQ 358

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
            DSFNI+AFNGETYLFS +MELA+ +AVERA +WI  NF+AGG TNI  PL  A+EML+N
Sbjct: 359 ADSFNIIAFNGETYLFSKTMELASGDAVERATEWINTNFVAGGGTNISHPLNTAIEMLSN 418

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
            + S+PIIFLVTDG VEDERQIC  +K+R+ NG SICPRIYTFGIGS+CNHYFLRMLAMI
Sbjct: 419 IQSSVPIIFLVTDGTVEDERQICAMVKNRMINGESICPRIYTFGIGSFCNHYFLRMLAMI 478

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
            RG Y AA D+D IE +M  LF +  S +LANI +DTL DLD+ E+YP  IPDLSSE PL
Sbjct: 479 GRGQYDAALDVDLIEPRMLTLFGKASSLILANIKMDTLDDLDDLEVYPPHIPDLSSEGPL 538

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           I+SGRY+G FP TLK +G L D SNFVV++K+Q AKDIP+ +I A+ QI+ LTAQAW  E
Sbjct: 539 ILSGRYRGNFPKTLKIEGILADFSNFVVDMKIQNAKDIPVQKISARDQIEHLTAQAWLME 598

Query: 601 DKRLEEKV 608
           +K+LE+KV
Sbjct: 599 NKQLEQKV 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547946|ref|XP_003542365.1| PREDICTED: uncharacterized protein LOC100800834 [Glycine max]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/608 (65%), Positives = 485/608 (79%), Gaps = 2/608 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA DF KAV+DGLKLSKR+YF KDR V+PPK P  M +       LP +PMVYAVI+DP 
Sbjct: 1   MAVDFSKAVDDGLKLSKRIYFVKDRAVSPPKPPPPMARWATA--FLPSAPMVYAVISDPG 58

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPDI SYQP+V+GRCDPP+LIPLQMNA+E++ DCY +TAFV VSGTWR+HCVMGS+S
Sbjct: 59  IVDNPDISSYQPHVYGRCDPPALIPLQMNAIEMEADCYHETAFVTVSGTWRLHCVMGSRS 118

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCRIAVP+  QGSILGVE  +S KSY TQL+ +G+ +G   SA  + G FL PNIFTLT
Sbjct: 119 CDCRIAVPVSHQGSILGVEVSVSRKSYSTQLVVMGDENGNQNSAPPQNGGFLIPNIFTLT 178

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
           +PQ+DGGS LSI++RWSQK+ Y  G+FS+NVPF FP++V PA K+I KREKI +NV+A T
Sbjct: 179 IPQVDGGSNLSIKVRWSQKIVYSKGQFSLNVPFTFPDFVNPAGKRISKREKIQINVDAVT 238

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           G E+LC T SH LK++RR  G +G+ Y+S+VL WS +DF FSY VS SHI GGVLL+S S
Sbjct: 239 GVELLCKTISHPLKEVRRHAGSMGFLYDSDVLSWSKVDFSFSYAVSSSHINGGVLLESAS 298

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
           + D D+REMF MYL PG  +S KVFKKD+IFI+DISGSM+GK +EDTKNAL  ALSKL+ 
Sbjct: 299 VQDFDEREMFYMYLSPGDIQSHKVFKKDIIFIIDISGSMRGKLIEDTKNALLTALSKLNH 358

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
            DSFNI+AFNGETYLFS +M+LA+ +AVERA +WI  NFIAG  TNI  PL  A+EML+N
Sbjct: 359 DDSFNILAFNGETYLFSKAMDLASGDAVERATEWINTNFIAGSGTNISHPLNTAIEMLSN 418

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
            + S+PI+FLVTDG VEDERQIC  +K+R+ NG SICPRIYTFGIGS+CNHYFLRMLAMI
Sbjct: 419 IQSSVPIVFLVTDGTVEDERQICAMVKNRMINGESICPRIYTFGIGSFCNHYFLRMLAMI 478

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
            RG Y AA D+D IE +M  LF +  S +LANI +DTL DLD+ E+YP  IPDLSSE PL
Sbjct: 479 GRGQYDAALDVDLIEPRMLTLFDKASSLILANIKMDTLDDLDDLEVYPPHIPDLSSEGPL 538

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           I+SGRY+G FP TLK KG L D SNFVV++K+Q AKDIP+ +I A+ QI+ LTAQAW  E
Sbjct: 539 ILSGRYRGNFPKTLKVKGILADFSNFVVDMKIQNAKDIPVQKISARDQIEHLTAQAWLME 598

Query: 601 DKRLEEKV 608
           +K+LE+KV
Sbjct: 599 NKQLEQKV 606

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8778285|gb|AAF79294.1|AC068602_17 F14D16.26 [Arabidopsis thaliana]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/608 (61%), Positives = 469/608 (77%), Gaps = 18/608 (2%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA+DF +AV+DGLKL+KR+YFGKDR V  P+ P+ MD+S      LP +PMVYAVI DP 
Sbjct: 1   MAEDFARAVDDGLKLAKRIYFGKDRAVAAPRPPAPMDRSSTTQPYLPTAPMVYAVIPDPG 60

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
           IVDNPD+PSYQP+VHGRCDPP+LIPLQMN++ELDVDCYLDTA V V+G+WRVHCVMGSK 
Sbjct: 61  IVDNPDLPSYQPHVHGRCDPPALIPLQMNSIELDVDCYLDTALVTVTGSWRVHCVMGSKR 120

Query: 121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
           CDCRIA+PMG+QGSILGVE EI  KSY TQLI   + +   K+A  ETG+          
Sbjct: 121 CDCRIAIPMGEQGSILGVEVEIPRKSYTTQLITAEDGNEFEKTALPETGT---------- 170

Query: 181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
                    LSI++ WSQKL+Y  G+F +++PF FPEYVTPA+KKI KREKI+L+VNAGT
Sbjct: 171 --------NLSIKMTWSQKLTYNQGQFFLDIPFNFPEYVTPAVKKISKREKIYLSVNAGT 222

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
           GTEVLC   SH LK+  R  GKL ++YE++VLKWSN DF FSYT S S+I GG+ LQS  
Sbjct: 223 GTEVLCKGCSHQLKEKLRSAGKLRFAYEADVLKWSNTDFSFSYTASSSNIVGGLFLQSAP 282

Query: 301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
           +HDVDQR++F  YL PG  +  K FK++V+F+VDIS SM GKPLED KNA++ ALSKLDP
Sbjct: 283 VHDVDQRDIFSFYLFPGKQQKTKAFKREVVFVVDISKSMTGKPLEDVKNAISTALSKLDP 342

Query: 361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
           GDSFNI+ F+ +T LFSTSME  T +AVER  +W+  NF+    TN+  PL KAVEML+N
Sbjct: 343 GDSFNIITFSNDTALFSTSMESVTSDAVERGIEWMNKNFVVADGTNMLPPLEKAVEMLSN 402

Query: 421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           +RGSIP+IF VTDG+VEDER ICD MK  L + GS+ PRI+TFG+G +CNHYFL+MLA I
Sbjct: 403 TRGSIPMIFFVTDGSVEDERHICDVMKKHLASAGSVFPRIHTFGLGVFCNHYFLQMLANI 462

Query: 481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
           S G + + Y+ D IE +M KLFT+  S++L NIAI+ L+ LDE E+YPS IPDL+S SPL
Sbjct: 463 SCGQHESVYNTDHIEERMDKLFTKALSTILVNIAIEPLQSLDEVEVYPSNIPDLTSASPL 522

Query: 541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
           ++ GRY+GKFP+ + AKG LGDLS+F  +L +Q AKD+PLD++ AK  IDLLTA+AWFSE
Sbjct: 523 MIYGRYRGKFPENVIAKGLLGDLSSFSTDLTVQSAKDMPLDKVFAKNVIDLLTAEAWFSE 582

Query: 601 DKRLEEKV 608
           DK+L+EK+
Sbjct: 583 DKQLKEKI 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450103|ref|XP_003595328.1| Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula] gi|355484376|gb|AES65579.1| Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/610 (62%), Positives = 483/610 (79%), Gaps = 5/610 (0%)

Query: 1   MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
           MA++F K+VE+G+KLSKR+YFG DR VT PK P +M K+      LP SPMVYAVI DPK
Sbjct: 1   MAEEFSKSVEEGIKLSKRIYFGNDRAVTAPKPPPTMSKTNTA--FLPTSPMVYAVIHDPK 58

Query: 61  IVDNPDIPSYQPYVHGRCDPPSLIPLQM-NAVELDVDCYLDTAFVRVSGTWRVHCVMGSK 119
           IVDNPD+PSYQP+VHGRCDPP+LIPLQM N V+L VD +LDTAFV VSG WR+HCV GS+
Sbjct: 59  IVDNPDVPSYQPHVHGRCDPPALIPLQMINGVDLRVDAWLDTAFVEVSGCWRLHCVSGSR 118

Query: 120 SCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSAS-VETGSFLKPNIFT 178
           SCDC + VPM  QGSILGVE  +  KSY TQL+ + +  G   +A+    G FLK NIFT
Sbjct: 119 SCDCIVVVPMSSQGSILGVEVSVHRKSYSTQLVDMEDKTGGKDNATKTHDGGFLKSNIFT 178

Query: 179 LTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNA 238
           LT+PQIDGGS LSI+L WSQK++  +   S+NVPF FP++V PA K++ K+EKI +NVNA
Sbjct: 179 LTIPQIDGGSNLSIKLSWSQKITCCNDVSSLNVPFTFPDFVNPAGKRMGKKEKIQINVNA 238

Query: 239 GTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQS 298
            TG++V C T+SH +K++RR  G +G+S+++++L WS  DF FSY+VS S I GGV+L+S
Sbjct: 239 VTGSDVKCKTASHPMKEVRRSAGSIGFSHDTDLLSWSKCDFSFSYSVSSSQINGGVILES 298

Query: 299 PSLHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL 358
            S+ D+DQREMFCMYL PG  +SRKVF+KD++F++DISGSM+GK ++DTKNAL+ ALSKL
Sbjct: 299 ASVDDIDQREMFCMYLSPGNLQSRKVFRKDIVFVIDISGSMRGKLIDDTKNALSAALSKL 358

Query: 359 DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEML 418
           DP DSF+I+AFNGE Y FSTSMELA+K+AVERA +WIGINF+AGG TNI  PL  A+EML
Sbjct: 359 DPDDSFSIIAFNGEIYQFSTSMELASKDAVERAVEWIGINFVAGGDTNILHPLNTALEML 418

Query: 419 TNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478
           ++ R S+PIIFLVTDG VEDER+ CD +  ++  G SI PRIYT GIGS+CN YFL+MLA
Sbjct: 419 SDGRRSVPIIFLVTDGTVEDERETCDMINKKI-RGESIFPRIYTLGIGSFCNQYFLKMLA 477

Query: 479 MISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSES 538
           MISRG + AA D+D +E+QM KLF +  S VLANI +D   DLDEFE+YPS+IPDLSS  
Sbjct: 478 MISRGQHVAALDVDLVELQMLKLFDKAASVVLANITMDVFDDLDEFEVYPSQIPDLSSNG 537

Query: 539 PLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWF 598
           PLI+ GR++G FP+ +K KG L D SNFV++LK+Q AKD+PL+R+ A++QI+ LTAQAW 
Sbjct: 538 PLILPGRFRGNFPEVVKVKGVLPDFSNFVIDLKIQNAKDMPLERVFAREQIEYLTAQAWL 597

Query: 599 SEDKRLEEKV 608
           + +K+LE K+
Sbjct: 598 TNNKQLEHKI 607

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	613
TAIR|locus:2011236	754	AT1G19110 "AT1G19110" [Arabido	0.991	0.806	0.643	1.8e-220
UNIPROTKB|Q47YR5	786	CPS_3379 "von Willebrand facto	0.538	0.419	0.285	4e-27
TIGR_CMR|CPS_3379	786	CPS_3379 "von Willebrand facto	0.538	0.419	0.285	4e-27
UNIPROTKB|Q8EF10	760	SO_2195 "Inter-alpha-trypsin i	0.489	0.394	0.275	2.3e-23
TIGR_CMR|SO_2195	760	SO_2195 "inter-alpha-trypsin i	0.489	0.394	0.275	2.3e-23
ZFIN|ZDB-GENE-050603-1	1174	itih6 "inter-alpha-trypsin inh	0.445	0.232	0.303	9.4e-17
MGI|MGI:109536	942	Itih4 "inter alpha-trypsin inh	0.367	0.238	0.301	2.4e-16
UNIPROTKB|H9GWG4	890	ITIH3 "Uncharacterized protein	0.672	0.462	0.220	2.8e-16
UNIPROTKB|P56652	891	ITIH3 "Inter-alpha-trypsin inh	0.670	0.461	0.219	6e-16
DICTYBASE|DDB_G0285981	831	DDB_G0285981 "type A von Wille	0.370	0.273	0.286	5.1e-15

TAIR|locus:2011236 AT1G19110 "AT1G19110" [Arabidopsis thaliana (taxid:3702)]

 Score = 2129 (754.5 bits), Expect = 1.8e-220, P = 1.8e-220
 Identities = 391/608 (64%), Positives = 486/608 (79%)

Query:     1 MADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDPK 60
             MA+DF +AV+DGLKL+KR+YFGKDR V  P+ P+ MD+S      LP +PMVYAVI DP 
Sbjct:     1 MAEDFARAVDDGLKLAKRIYFGKDRAVAAPRPPAPMDRSSTTQPYLPTAPMVYAVIPDPG 60

Query:    61 IVDNPDIPSYQPYVHGRCDPPSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKS 120
             IVDNPD+PSYQP+VHGRCDPP+LIPLQMN++ELDVDCYLDTA V V+G+WRVHCVMGSK 
Sbjct:    61 IVDNPDLPSYQPHVHGRCDPPALIPLQMNSIELDVDCYLDTALVTVTGSWRVHCVMGSKR 120

Query:   121 CDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLT 180
             CDCRIA+PMG+QGSILGVE EI  KSY TQLI   + +   K+A  ETG FLKPNIFTLT
Sbjct:   121 CDCRIAIPMGEQGSILGVEVEIPRKSYTTQLITAEDGNEFEKTALPETGGFLKPNIFTLT 180

Query:   181 LPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGT 240
             +PQ+DGG+ LSI++ WSQKL+Y  G+F +++PF FPEYVTPA+KKI KREKI+L+VNAGT
Sbjct:   181 IPQVDGGTNLSIKMTWSQKLTYNQGQFFLDIPFNFPEYVTPAVKKISKREKIYLSVNAGT 240

Query:   241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVSPSHIFGGVLLQSPS 300
             GTEVLC   SH LK+  R  GKL ++YE++VLKWSN DF FSYT S S+I GG+ LQS  
Sbjct:   241 GTEVLCKGCSHQLKEKLRSAGKLRFAYEADVLKWSNTDFSFSYTASSSNIVGGLFLQSAP 300

Query:   301 LHDVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP 360
             +HDVDQR++F  YL PG  +  K FK++V+F+VDIS SM GKPLED KNA++ ALSKLDP
Sbjct:   301 VHDVDQRDIFSFYLFPGKQQKTKAFKREVVFVVDISKSMTGKPLEDVKNAISTALSKLDP 360

Query:   361 GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN 420
             GDSFNI+ F+ +T LFSTSME  T +AVER  +W+  NF+    TN+  PL KAVEML+N
Sbjct:   361 GDSFNIITFSNDTALFSTSMESVTSDAVERGIEWMNKNFVVADGTNMLPPLEKAVEMLSN 420

Query:   421 SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
             +RGSIP+IF VTDG+VEDER ICD MK  L + GS+ PRI+TFG+G +CNHYFL+MLA I
Sbjct:   421 TRGSIPMIFFVTDGSVEDERHICDVMKKHLASAGSVFPRIHTFGLGVFCNHYFLQMLANI 480

Query:   481 SRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPL 540
             S G + + Y+ D IE +M KLFT+  S++L NIAI+ L+ LDE E+YPS IPDL+S SPL
Sbjct:   481 SCGQHESVYNTDHIEERMDKLFTKALSTILVNIAIEPLQSLDEVEVYPSNIPDLTSASPL 540

Query:   541 IVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSE 600
             ++ GRY+GKFP+ + AKG LGDLS+F  +L +Q AKD+PLD++ AK  IDLLTA+AWFSE
Sbjct:   541 MIYGRYRGKFPENVIAKGLLGDLSSFSTDLTVQSAKDMPLDKVFAKNVIDLLTAEAWFSE 600

Query:   601 DKRLEEKV 608
             DK+L+EK+
Sbjct:   601 DKQLKEKI 608

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009690 "cytokinin metabolic process" evidence=RCA

UNIPROTKB|Q47YR5 CPS_3379 "von Willebrand factor type A domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 313 (115.2 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
 Identities = 102/357 (28%), Positives = 166/357 (46%)

Query:   208 SVNVPFKFP--EYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGY 265
             S+  PFK       T  ++ +  R +  +N+   +G  +    S  H  Q R    KL  
Sbjct:   272 SLPEPFKISTTRSSTTHVRSVA-RSQSSINIVLNSGIPITSIVSDSHKIQSRDLSSKLNS 330

Query:   266 SYESEVLKW------SNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTA 319
                +  +        SN  FD ++ +  S+        S    ++       +   P   
Sbjct:   331 EQNAYFITLDKTQVISNKTFDLTWQLIASN----QPQVSSFTQEISGEHYTLLTFFPPEK 386

Query:   320 KSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTS 379
                +V  +D+IFI+D SGSMQ   +E  K++L +AL +L+  DSFNI+AF+ +T L    
Sbjct:   387 AVAQVIARDIIFIIDTSGSMQAGSMEQAKSSLQLALLQLNNKDSFNIIAFDNDTELLFPV 446

Query:   380 MELATKEAVERAHQWI-GINFIAGGSTNICAPLTKAVEML---TNSRGSIPIIFLVTDGA 435
               +A+   + +A Q+I G++  A G T +  PL+ A+ M    T S  +I  I  +TDGA
Sbjct:   447 THMASAHNISKAQQFIDGLS--ANGGTEMYRPLSNALMMKKDKTQSSKAIRQIVFITDGA 504

Query:   436 VEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIE 495
             V +E ++   +    T  G    R+YT GIG+  N YF++  A   RG Y    +   ++
Sbjct:   505 VANEFELMQLLN---TAQGDF--RLYTVGIGAAPNGYFMKKAAQFGRGSYVFIQNKSEVQ 559

Query:   496 IQMQKLFTRGFSSVLANIAIDTLKDLDEF-EMYPSRIPDLSSESPLIVSGRYQGKFP 551
              +M    T+     L NIA+     + +  E+YP +IPDL    PL ++ + Q  FP
Sbjct:   560 RKMSHFMTKISQPALTNIALTLDNQIHQHVEVYPKKIPDLYFGEPLQIALKSQ--FP 614

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3379 CPS_3379 "von Willebrand factor type A domain protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 313 (115.2 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
 Identities = 102/357 (28%), Positives = 166/357 (46%)

Query:   208 SVNVPFKFP--EYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGY 265
             S+  PFK       T  ++ +  R +  +N+   +G  +    S  H  Q R    KL  
Sbjct:   272 SLPEPFKISTTRSSTTHVRSVA-RSQSSINIVLNSGIPITSIVSDSHKIQSRDLSSKLNS 330

Query:   266 SYESEVLKW------SNIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTA 319
                +  +        SN  FD ++ +  S+        S    ++       +   P   
Sbjct:   331 EQNAYFITLDKTQVISNKTFDLTWQLIASN----QPQVSSFTQEISGEHYTLLTFFPPEK 386

Query:   320 KSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTS 379
                +V  +D+IFI+D SGSMQ   +E  K++L +AL +L+  DSFNI+AF+ +T L    
Sbjct:   387 AVAQVIARDIIFIIDTSGSMQAGSMEQAKSSLQLALLQLNNKDSFNIIAFDNDTELLFPV 446

Query:   380 MELATKEAVERAHQWI-GINFIAGGSTNICAPLTKAVEML---TNSRGSIPIIFLVTDGA 435
               +A+   + +A Q+I G++  A G T +  PL+ A+ M    T S  +I  I  +TDGA
Sbjct:   447 THMASAHNISKAQQFIDGLS--ANGGTEMYRPLSNALMMKKDKTQSSKAIRQIVFITDGA 504

Query:   436 VEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIE 495
             V +E ++   +    T  G    R+YT GIG+  N YF++  A   RG Y    +   ++
Sbjct:   505 VANEFELMQLLN---TAQGDF--RLYTVGIGAAPNGYFMKKAAQFGRGSYVFIQNKSEVQ 559

Query:   496 IQMQKLFTRGFSSVLANIAIDTLKDLDEF-EMYPSRIPDLSSESPLIVSGRYQGKFP 551
              +M    T+     L NIA+     + +  E+YP +IPDL    PL ++ + Q  FP
Sbjct:   560 RKMSHFMTKISQPALTNIALTLDNQIHQHVEVYPKKIPDLYFGEPLQIALKSQ--FP 614

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EF10 SO_2195 "Inter-alpha-trypsin inhibitor family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 270 (100.1 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
 Identities = 91/330 (27%), Positives = 160/330 (48%)

Query:   298 SPSLHDVDQREMFCMYLLPGTAKSRKV-FKKDVIFIVDISGSMQGKPLEDTKNALAVALS 356
             S S  ++D   +  M L P    S ++   +++I ++D SGSM G  +   KNAL  AL 
Sbjct:   349 STSASNIDNYSLV-MVLPPKVEASGQLNLPRELILVIDTSGSMAGDSIIQAKNALRYALR 407

Query:   357 KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVE 416
              L   DSFNI+ FN +  L S     AT E +  A Q++     A G T +   L  A+ 
Sbjct:   408 GLKAQDSFNIIEFNSDVSLLSPVPLPATAENLAIARQFVN-RLQADGGTEMSLALEAALP 466

Query:   417 MLTNSRGS-----IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNH 471
                 SR +     +  +  +TDG+V +E  + + ++ ++ +      R++T GIGS  N 
Sbjct:   467 KQRPSRAASENNVLQQVIFMTDGSVGNEEALFELIRHQIGDN-----RLFTVGIGSAPNS 521

Query:   472 YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRI 531
             +F++  A + RG +    D+D +E ++ +L T+    VL ++ +    D    + +PS I
Sbjct:   522 HFMQRAAELGRGTFTYIGDVDEVEQKINQLLTKIQYPVLTDLQV-RFDDGTVPDYWPSPI 580

Query:   532 PDLSSESPLIVSGRYQGKFPDTLKAKGFLG-------------DLSNFVVELKLQLAKDI 578
             PDL    P+++S ++Q + P  L   G  G             +L+N    ++ Q+A   
Sbjct:   581 PDLYRGEPVLISIKHQPREPKELVISGRQGHKNWQQFVSLESTELNNAAAAVEQQVAG-- 638

Query:   579 PLDRICAKQQIDLLTAQAWFSEDKRLEEKV 608
              LD + A++QI  L      + D +++++V
Sbjct:   639 -LDLLWARKQIAALELSKNGANDDKVKQQV 667

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2195 SO_2195 "inter-alpha-trypsin inhibitor domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 270 (100.1 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
 Identities = 91/330 (27%), Positives = 160/330 (48%)

Query:   298 SPSLHDVDQREMFCMYLLPGTAKSRKV-FKKDVIFIVDISGSMQGKPLEDTKNALAVALS 356
             S S  ++D   +  M L P    S ++   +++I ++D SGSM G  +   KNAL  AL 
Sbjct:   349 STSASNIDNYSLV-MVLPPKVEASGQLNLPRELILVIDTSGSMAGDSIIQAKNALRYALR 407

Query:   357 KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVE 416
              L   DSFNI+ FN +  L S     AT E +  A Q++     A G T +   L  A+ 
Sbjct:   408 GLKAQDSFNIIEFNSDVSLLSPVPLPATAENLAIARQFVN-RLQADGGTEMSLALEAALP 466

Query:   417 MLTNSRGS-----IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNH 471
                 SR +     +  +  +TDG+V +E  + + ++ ++ +      R++T GIGS  N 
Sbjct:   467 KQRPSRAASENNVLQQVIFMTDGSVGNEEALFELIRHQIGDN-----RLFTVGIGSAPNS 521

Query:   472 YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRI 531
             +F++  A + RG +    D+D +E ++ +L T+    VL ++ +    D    + +PS I
Sbjct:   522 HFMQRAAELGRGTFTYIGDVDEVEQKINQLLTKIQYPVLTDLQV-RFDDGTVPDYWPSPI 580

Query:   532 PDLSSESPLIVSGRYQGKFPDTLKAKGFLG-------------DLSNFVVELKLQLAKDI 578
             PDL    P+++S ++Q + P  L   G  G             +L+N    ++ Q+A   
Sbjct:   581 PDLYRGEPVLISIKHQPREPKELVISGRQGHKNWQQFVSLESTELNNAAAAVEQQVAG-- 638

Query:   579 PLDRICAKQQIDLLTAQAWFSEDKRLEEKV 608
              LD + A++QI  L      + D +++++V
Sbjct:   639 -LDLLWARKQIAALELSKNGANDDKVKQQV 667

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050603-1 itih6 "inter-alpha-trypsin inhibitor heavy chain family, member 6" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 9.4e-17, P = 9.4e-17
 Identities = 91/300 (30%), Positives = 141/300 (47%)

Query:   294 VLLQSPSLHDVDQRE-MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALA 352
             V L+ P + D+   +  F  Y  P   +   V  KDVIF++DISGSM G  ++ TK A+ 
Sbjct:   262 VELKDP-MGDIQVDDGYFVHYFAP---RGLPVVPKDVIFVIDISGSMIGTKIKQTKAAMV 317

Query:   353 VALSKLDPGDSFNIVAFNGETYLFSTSMEL-ATKEAVERAHQWIGINFIAGGSTNICAPL 411
               LS L  GD FN++ F+ + + +     + AT++ V  A +++    IA G TNI A L
Sbjct:   318 SILSDLREGDYFNLITFSDDVHTWKKDRTVRATRQNVRDAKEFVR-KIIAAGWTNINAAL 376

Query:   412 TKAVEML---TNSRGS---------IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPR 459
               A ++L   T S  S         +P+I  +TDG         D +   L N       
Sbjct:   377 LSAAKLLNPSTRSSSSTGRAPSSQRVPMIIFLTDGEATIGETETDVI---LHNAQKSLGL 433

Query:   460 IYTFGI--GSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDT 517
             +  FG+  G   +   LR LA+ +RG     Y+ D   IQ++  +    + +L++I +  
Sbjct:   434 VSLFGLAFGDDADFPMLRRLALENRGVARMVYEDDDAAIQLKGFYDEVATPLLSDIQLSY 493

Query:   518 LKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFV-VELKLQLAK 576
             L D   +++  S  P+    S L+V+GR +    D LK      D    V VE +L LAK
Sbjct:   494 LDD-QVYDITRSLFPNYFQGSELVVTGRLKPGVRD-LKITLTASDSKQKVKVENELPLAK 551

GO:0030212 "hyaluronan metabolic process" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

MGI|MGI:109536 Itih4 "inter alpha-trypsin inhibitor, heavy chain 4" [Mus musculus (taxid:10090)]

 Score = 238 (88.8 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 73/242 (30%), Positives = 117/242 (48%)

Query:   327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKE 386
             K+VIF++D SGSM GK ++ T+ AL   L  L P D FN++ F+GE   +  S+  AT+E
Sbjct:   273 KNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNLIEFSGEANQWKQSLVQATEE 332

Query:   387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRG-------SIPIIFLVTDG---AV 436
              + +A  +      A G TNI   +  AVE+L  S         S+ +I L+TDG     
Sbjct:   333 NLNKAVNYAS-RIRAHGGTNINNAVLLAVELLDRSNQAELLPSKSVSLIILLTDGDPTVG 391

Query:   437 EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEI 496
             E    I         NG      ++  G G   N+ FL  +A+ + G     Y+     +
Sbjct:   392 ETNPTIIQNNVREAINGQY---SLFCLGFGFDVNYPFLEKMALDNGGLARRIYEDSDSAL 448

Query:   497 QMQKLFTRGFSSVLANIAIDTLKD-LDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLK 555
             Q+Q  +    + +L+++A +   D ++E   Y  +     SE  ++V+G+ Q + PD L 
Sbjct:   449 QLQDFYHEVANPLLSSVAFEYPSDAVEEVTRYKFQHHFKGSE--MVVAGKLQDQGPDVLL 506

Query:   556 AK 557
             AK
Sbjct:   507 AK 508

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005540 "hyaluronic acid binding" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006953 "acute-phase response" evidence=IEA

GO:0010466 "negative regulation of peptidase activity" evidence=IEA

GO:0030212 "hyaluronan metabolic process" evidence=IEA

GO:0030414 "peptidase inhibitor activity" evidence=IEA

UNIPROTKB|H9GWG4 ITIH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 100/454 (22%), Positives = 196/454 (43%)

Query:   139 EAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQ 198
             E E++ K Y     A+ +    GK+A +   S  K   FT+++  +  GS ++  L + +
Sbjct:   106 EKEVAKKQYEK---AVSQ----GKTAGLVKASGRKLEKFTVSV-NVAAGSKVTFELTYEE 157

Query:   199 KLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRR 258
              L  R G++ + +       V P  K++ K  +I  ++    G   L   +S     L  
Sbjct:   158 LLKRRKGKYEMYLK------VQP--KQLVKHFEIEADIYEPQGISTLDAEASFITNDLLG 209

Query:   259 DVGKLGYSYESEVLKWS-NIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLPG 317
                   +S +   + +  ++D   S       +  G  + +   +DV++     + ++ G
Sbjct:   210 SALTKSFSGKKGRVSFKPSLDQQRSCPTCTDSLLNGDFIIT---YDVNRESPANVQIVNG 266

Query:   318 ------TAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNG 371
                     +   V  K+V+F++D+SGSM G+ +E TK+AL   L  +   D  N + F+G
Sbjct:   267 YFVHFFAPQGLPVVPKNVVFVIDVSGSMHGRKMEQTKDALLKILGDMKGEDYLNFILFSG 326

Query:   372 ETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGS--IP--- 426
             +   +   +  AT E +E A  ++  N    G TNI   L + + ML  +R    +P   
Sbjct:   327 DVITWKDDLVQATPENIEEARIFVK-NIHDRGLTNINDGLLRGISMLNRAREEHRVPERS 385

Query:   427 --IIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIYTFGIGSYCNHYFLRMLAMISRG 483
               II ++TDG         + ++  + N  G   P +Y  G G+  N+ FL  +A+ + G
Sbjct:   386 TSIIIMLTDGDANVGESRPEKIQENVRNAIGGKFP-LYNLGFGNNLNYNFLESMALENHG 444

Query:   484 YYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVS 543
                  Y+     +Q+Q  +    + +L  + ++  ++  + ++  +        S ++V+
Sbjct:   445 LARRIYEDSDANLQLQGFYEEVANPLLTGVEVEYPENAIQ-DLTQNAYQHFYDGSEIVVA 503

Query:   544 GRY----QGKFPDTLKAKGFLGDLSNFVVELKLQ 573
             GR        F   +K  G   DL+ F  E+ ++
Sbjct:   504 GRLLDEDMNNFKADVKGHGATNDLT-FTEEVDMK 536

GO:0030212 "hyaluronan metabolic process" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

UNIPROTKB|P56652 ITIH3 "Inter-alpha-trypsin inhibitor heavy chain H3" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 100/455 (21%), Positives = 202/455 (44%)

Query:   139 EAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQ 198
             E E++ K Y     A+ +    GK+A +   S  K   FT+++  +  GS ++  L + +
Sbjct:   107 EKEVAKKQYEK---AVSQ----GKTAGLVKASGRKLEKFTVSV-NVAAGSKVTFELTYEE 158

Query:   199 KLSYRDGEFSVNVPFKFPEYVTPAIKKIPKREKIHLNVNAGTGTEVLCNTSSHHLKQLRR 258
              L    G++ + +       V P  K++ K  +I +++    G   L   +S     L  
Sbjct:   159 LLKRHKGKYEMYLK------VQP--KQLVKHFEITVDIFEPQGISTLDAEASFITNDLLG 210

Query:   259 DVGKLGYSYESEVLKWS-NIDFDFSY-TVSPSHIFGGVLLQSPSLHDVDQREMFCMYLLP 316
                   +S +   + +  ++D   S  T + S + G  ++     +DV++     + ++ 
Sbjct:   211 SALTKSFSGKKGHVSFKPSLDQQRSCPTCTDSLLKGDFIIT----YDVNRESPANVQIVN 266

Query:   317 G------TAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFN 370
             G        +   V  K V+F++D+SGSM G+ +E TK+AL   L  +   D  N + F+
Sbjct:   267 GYFVHFFAPQGLPVVPKSVVFVIDVSGSMHGRKMEQTKDALLKILEDVKQDDYLNFILFS 326

Query:   371 GETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRG--SIP-- 426
             G+   +  S+  AT E ++ A +++ ++    G TNI   L + + ML  +R   ++P  
Sbjct:   327 GDVTTWKDSLVPATPENIQEASKFV-MDIQDRGMTNINDALLRGISMLNKAREEHTVPER 385

Query:   427 ---IIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIYTFGIGSYCNHYFLRMLAMISR 482
                II ++TDG         + ++  + N  G   P +Y  G G+  N+ FL  +A+ + 
Sbjct:   386 STSIIIMLTDGDANVGESRPEKIQENVRNAIGGKFP-LYNLGFGNNLNYNFLENMALENH 444

Query:   483 GYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIV 542
             G     Y+     +Q+Q  +    + +L  + ++  ++    ++  +        S ++V
Sbjct:   445 GLARRIYEDSDANLQLQGFYEEVANPLLTGVEVEYPQNAI-LDLTQNSYQHFYDGSEIVV 503

Query:   543 SGRY----QGKFPDTLKAKGFLGDLSNFVVELKLQ 573
             +GR        F   +K  G + DL+ F  E+ ++
Sbjct:   504 AGRLADEDMNSFKAAVKGHGAINDLT-FTEEVDMK 537

GO:0005576 "extracellular region" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0030212 "hyaluronan metabolic process" evidence=IEA

DICTYBASE|DDB_G0285981 DDB_G0285981 "type A von Willebrand factor (VWFA) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 225 (84.3 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 69/241 (28%), Positives = 115/241 (47%)

Query:   326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGE-TYLFSTSMELAT 384
             K + IF++D SGSM G+P++  K AL + +  L+    FNI  F    T  F  S ++  
Sbjct:   310 KSEFIFLIDCSGSMSGEPIKKAKRALEIIIRSLNENCKFNIYCFGSRFTKAFDNS-KMYN 368

Query:   385 KEAVERAHQWIG-INFIAGGSTNICAPLTKAVEMLTNSRGSIPI-IFLVTDGAVEDERQI 442
              E + +   ++  I+   GG T +  P+   +   T S    P  +F++TDG V +   +
Sbjct:   369 DETLAQISGYVEKIDADLGG-TELLPPIRDILS--TESDFEYPRQLFILTDGEVSERDSL 425

Query:   443 CDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLF 502
              + + +   N      RI+T+GIG+  +   +  L+   +GYY    D  + E Q+ KL 
Sbjct:   426 INYVATESNN-----TRIFTYGIGNSVDTELVIGLSKACKGYYEMIKDNSNFEEQVMKLV 480

Query:   503 TRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQ-GKFPDTLKAKGFLG 561
             +  F   L+NI +D   +L + E  P++I  L S   LIV    +  K P +      +G
Sbjct:   481 SIAFEPTLSNIKVDWGTEL-QIEQGPTKIRPLYSGETLIVYALLKDNKIPQSTVQVSLIG 539

Query:   562 D 562
             D
Sbjct:   540 D 540

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	613
cd01461	171	cd01461, vWA_interalpha_trypsin_inhibitor, vWA_int	2e-64
TIGR03788	596	TIGR03788, marine_srt_targ, marine proteobacterial	7e-53
cd00198	161	cd00198, vWFA, Von Willebrand factor type A (vWA)	5e-23
pfam13768	156	pfam13768, VWA_3, von Willebrand factor type A dom	1e-17
pfam13519	172	pfam13519, VWA_2, von Willebrand factor type A dom	2e-16
smart00327	175	smart00327, VWA, von Willebrand factor (vWF) type	3e-16
pfam00092	178	pfam00092, VWA, von Willebrand factor type A domai	4e-16
cd01463	190	cd01463, vWA_VGCC_like, VWA Voltage gated Calcium	3e-15
cd01465	170	cd01465, vWA_subgroup, VWA subgroup: Von Willebran	2e-13
cd01466	155	cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Wille	8e-10
cd01450	161	cd01450, vWFA_subfamily_ECM, Von Willebrand factor	1e-09
COG2304	399	COG2304, COG2304, Uncharacterized protein containi	1e-08
cd01467	180	cd01467, vWA_BatA_type, VWA BatA type: Von Willebr	1e-06
cd01462	152	cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebr	1e-05
cd01464	176	cd01464, vWA_subfamily, VWA subfamily: Von Willebr	1e-05
TIGR02442	633	TIGR02442, Cob-chelat-sub, cobaltochelatase subuni	1e-04
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	5e-04
COG1240	261	COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme	7e-04
cd01451	178	cd01451, vWA_Magnesium_chelatase, Magnesium chelat	0.002

>gnl|CDD|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)

 Score =  208 bits (533), Expect = 2e-64
 Identities = 73/176 (41%), Positives = 98/176 (55%), Gaps = 5/176 (2%)

Query: 325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELAT 384
             K+V+F++D SGSM G  +E TK AL  AL  L PGD FNI+ F+     FS S   AT
Sbjct: 1   LPKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSAT 60

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICD 444
            E V  A +++      GG TN+   L  A+E+L +S GS+P I L+TDG V +E QI  
Sbjct: 61  AENVAAAIEYVNRLQALGG-TNMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILK 119

Query: 445 AMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQK 500
            ++  L+       R++TFGIGS  N Y L  LA   RG     Y+ D IE Q+ +
Sbjct: 120 NVREALSGR----IRLFTFGIGSDVNTYLLERLAREGRGIARRIYETDDIESQLLR 171

Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix. Length = 171

>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein

 Score =  190 bits (485), Expect = 7e-53
 Identities = 126/481 (26%), Positives = 221/481 (45%), Gaps = 74/481 (15%)

Query: 160 AGKSAS-VETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKFPEY 218
            GK A+ VE     +PN+FT  +  I  G  + + + + Q +SY  G FS+    + P  
Sbjct: 76  EGKKAALVEQQ---RPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSL----RLPLT 128

Query: 219 VTP---------------------AIKKIPKREKI-----------------HLNVNAGT 240
           VTP                        ++P  +KI                  +NV+   
Sbjct: 129 VTPRYIPGSTVNTVTDVNNSGWAIPTTQVPDADKISAPRVLDPDDDAPSSQASINVDLNA 188

Query: 241 GTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKW-SNIDFDFSYTVSPSHIFGGVLLQSP 299
           G  +   TS  H  Q+ +  G+ GY+      +  ++ DF  ++  +          ++P
Sbjct: 189 GLPLDSITSPSHPIQIEQQ-GQSGYTISLAQGQVIADRDFVLTWRPAQG--------EAP 239

Query: 300 SLHDVDQR---EMFCMYLL--PGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVA 354
           S     ++   E + + ++  P  A   +V  ++++F++D SGSM G+ +E  K+AL +A
Sbjct: 240 SAALFREQIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLA 299

Query: 355 LSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKA 414
           L +L PGD FNI+ F+ +  L       AT   + RA Q++     A G T +   L+ A
Sbjct: 300 LDQLRPGDRFNIIQFDSDVTLLFPVPVPATAHNLARARQFVA-GLQADGGTEMAGALSAA 358

Query: 415 VEM-LTNSRGSI-PIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHY 472
           +      S G++  ++FL TDGAV +E  +   ++++L +      R++T GIGS  N Y
Sbjct: 359 LRDDGPESSGALRQVVFL-TDGAVGNEDALFQLIRTKLGDS-----RLFTVGIGSAPNSY 412

Query: 473 FLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEFEMYPSRIP 532
           F+R  A   RG +      D ++ +M +LF +     L +IA+ T  + +  ++YPS IP
Sbjct: 413 FMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIAL-TFDNGNAADVYPSPIP 471

Query: 533 DLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAKDIP-LDRICAKQQIDL 591
           DL    PL ++ +   +    L+  G  G    +  +L L  A     +D++ A+++ID 
Sbjct: 472 DLYRGEPLQIAIK-LQQAAGELQLTGRTGS-QPWSQQLDLDSAAPGKGIDKLWARRKIDS 529

Query: 592 L 592
           L
Sbjct: 530 L 530

Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092). Length = 596

>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 95.7 bits (238), Expect = 5e-23
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNA---LAVALSKLDPGDSFNIVAFNGETYLFSTSMELAT 384
           D++F++D+SGSM G+ L+  K A   L  +LS   PGD   +V F     +         
Sbjct: 2   DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTD 61

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQI 442
           K  +  A     +    GG TNI A L  A+E+L +++   +  +I L+TDG   D  ++
Sbjct: 62  KADLLEA--IDALKKGLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPEL 119

Query: 443 CDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485
                  L   G     +YT GIG   N   L+ +A  + G  
Sbjct: 120 LAEAARELRKLG---ITVYTIGIGDDANEDELKEIADKTTGGA 159

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Length = 161

>gnl|CDD|222367 pfam13768, VWA_3, von Willebrand factor type A domain

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 5/159 (3%)

Query: 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKE 386
            DV+ +VD+S SM G+P+   K+AL+  L  L P D FN+V F  E           +  
Sbjct: 1   GDVVILVDVSSSMSGEPINLVKDALSAILRSLPPRDKFNVVLFGTEPRPLFPGGRAVSSS 60

Query: 387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAM 446
            ++   Q+I       G TN+   L  A+  L  S G I  + L++DG+  D        
Sbjct: 61  HLQELLQFIKTLEPPLGGTNLLGALKLAMRALK-SPGIIRHVLLLSDGSPSD--NPSRTS 117

Query: 447 KSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485
           +        I   I+ +G+G   +   L+ LA    G Y
Sbjct: 118 QLIRQAPRHIR--IFAYGLGPTLSPDMLQELAEAGGGSY 154

Length = 156

>gnl|CDD|222192 pfam13519, VWA_2, von Willebrand factor type A domain

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 22/185 (11%)

Query: 328 DVIFIVDISGSMQGKP-----LEDTKNALAVALSKLDPGDSFNIVAFNGETYLFS--TSM 380
           D++ ++D+SGSM         L   K A+A  L++L PGD   ++AF G  YL    T  
Sbjct: 1   DLVIVLDVSGSMNATDLKPSRLTRAKAAIADLLARL-PGDRVGLIAFAGSAYLVLPLTDD 59

Query: 381 ELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER 440
             A   A+      +    + GG TN+ A L  A+ +L  + G    I L+TDG  ED  
Sbjct: 60  RAALAAALPA----LSPRIMPGGGTNLAAALALALRLLAGAGGGSGAIVLITDG--EDTP 113

Query: 441 QICDAMKSRLTNGGSICPRIYTFGIGSYCNHY-FLRMLAMISRGYYGAAYDLDSIEIQMQ 499
            + +A  +    G     R+Y  G+G+       L+ LA  + G Y    D  +    + 
Sbjct: 114 SLLEAASALKQAG----VRVYVLGVGTDEGAEDALQRLAKATGGRY---VDATADAADLD 166

Query: 500 KLFTR 504
            L   
Sbjct: 167 ALLQA 171

Length = 172

>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELAT 384
           DV+F++D SGSM G   E  K  +   + +LD    GD   +V F+ +  +     +  +
Sbjct: 1   DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRS 60

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEML-----TNSRGSIPIIFLVTDGAVED- 438
           K+A+  A     +++  GG TN+ A L  A+E L      + RG+  ++ L+TDG   D 
Sbjct: 61  KDALLEALA--SLSYKLGGGTNLGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDG 118

Query: 439 ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485
            + +  A K    +G     +++  G+G+  +   L+ LA    G Y
Sbjct: 119 PKDLLKAAKELKRSG----VKVFVVGVGNDVDEEELKKLASAPGGVY 161

VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods. Length = 175

>gnl|CDD|215711 pfam00092, VWA, von Willebrand factor type A domain

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 18/180 (10%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELAT 384
           D++F++D SGS+     E  K  +   + +LD    G    +V ++ +     +  +  +
Sbjct: 1   DIVFLLDGSGSIGEANFEKVKEFIKKLVERLDIGPDGTRVGLVQYSSDVTTEFSLNDYKS 60

Query: 385 KEAVERAHQWIGIN-FIAGGSTNICAPLTKAVEML-TNSRGSIP----IIFLVTDGAVED 438
           K+ +  A   +  N +  GG TN    L  A+E L ++S GS P    ++ L+TDG   D
Sbjct: 61  KDDLLSA---VSKNIYYLGGGTNTGKALKYALENLFSSSAGSRPNAPKVVILLTDGKSND 117

Query: 439 ERQICDAMKSRLTNGGSICPRIYTFGIGSY-CNHYFLRMLAMISRGYYGAAYDLDSIEIQ 497
              +  A  +     G     I  FG+G    +   LR++A          Y  D   +Q
Sbjct: 118 GGLVPAAAAALRRKVG-----IIVFGVGVGDVDEEELRLIASEPCSEGHVFYVTDFDALQ 172

Length = 178

>gnl|CDD|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 17/173 (9%)

Query: 327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYL----FSTSMEL 382
           KD++ ++D+SGSM G+ L   K  ++  L  L   D FNI+ F+ E       F+ ++  
Sbjct: 14  KDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQ 73

Query: 383 ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLT-------NSRGSI--PIIFLVTD 433
           AT    +   + +     A G  N    L  A  +L        +   S     I L+TD
Sbjct: 74  ATTSNKKVLKEALD-MLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITD 132

Query: 434 GAVEDERQICDAMKSRLTNGGSICPRIYTFGIG-SYCNHYFLRMLAMISRGYY 485
           G  E+ ++I D  K        I  R++T+ IG    +   ++ +A  ++GYY
Sbjct: 133 GVPENYKEIFD--KYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYY 183

The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex. Length = 190

>gnl|CDD|238742 cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 34/186 (18%)

Query: 331 FIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNG--ETYLFSTSM--ELATKE 386
           F++D SGSM G  L   K+AL + + +L P D   IV ++G  ET L +T +  + A   
Sbjct: 5   FVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPVRDKAAILA 64

Query: 387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS--RGSIPIIFLVTDG--------AV 436
           A++R          AGGST   A +    +        G +  I L TDG          
Sbjct: 65  AIDRLT--------AGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPD 116

Query: 437 EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEI 496
           E  R +    +S +T        + T G G   N   +  +A    G    AY +D++  
Sbjct: 117 ELARLVAQKRESGIT--------LSTLGFGDNYNEDLMEAIADAGNGNT--AY-IDNLA- 164

Query: 497 QMQKLF 502
           + +K+F
Sbjct: 165 EARKVF 170

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Not much is known about the function of the VWA domain in these proteins. The members do have a conserved MIDAS motif. The biochemical function however is not known. Length = 170

>gnl|CDD|238743 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 12/160 (7%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEA 387
           D++ ++D+SGSM G  L+  K+AL   +S L   D  +IV F+      S    +  K  
Sbjct: 2   DLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLRRMTAK-G 60

Query: 388 VERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDA 445
              A + +     AGG TN+   L KA+++L + R    +  I L++DG       +  A
Sbjct: 61  KRSAKRVVDGLQ-AGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVVLRA 119

Query: 446 MKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY 485
             + +         I+TFG+G+  +   L  +A I+ G +
Sbjct: 120 DNAPIP--------IHTFGLGASHDPALLAFIAEITGGTF 151

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Membes of this subgroup belong to Zinc-finger family as they are found fused to RING finger domains. The MIDAS motif is not conserved in all the members of this family. The function of vWA domains however is not known. Length = 155

>gnl|CDD|238727 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 14/158 (8%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           D++F++D S S+  +  E  K+ +   + KLD G       +V ++ +  +  +  +  +
Sbjct: 2   DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKS 61

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEML---TNSRGSIP-IIFLVTDGAVEDER 440
           K+ + +A +   + ++ GG TN    L  A+E L   +N+R ++P +I ++TDG  +D  
Sbjct: 62  KDDLLKAVK--NLKYLGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG 119

Query: 441 QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478
              +A       G     +++  G+G   +   LR +A
Sbjct: 120 DPKEAAAKLKDEG----IKVFVVGVGPA-DEEELREIA 152

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains . Length = 161

>gnl|CDD|225187 COG2304, COG2304, Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 67/289 (23%), Positives = 107/289 (37%), Gaps = 19/289 (6%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEA 387
           ++   +D SGSM G  LE  K+A    ++ L+PGD  +IV F G   +         KE+
Sbjct: 39  NLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTGATNKES 98

Query: 388 VERAHQWIGINFIAGGSTNICAPLTKAVEMLTN--SRGSIPIIFLVTDGAVEDERQICDA 445
           +  A   I  +  AGG+T + A L+ AVE+      RG++  I L+TDG  E+   + D 
Sbjct: 99  ITAA---IDQSLQAGGATAVEASLSLAVELAAKALPRGTLNRILLLTDG--ENNLGLVDP 153

Query: 446 MKSRLTNGGSICP----RIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKL 501
             SRL+    +       + T G+G   N   L  +A  + G     Y     E Q    
Sbjct: 154 --SRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAAANGNLAFIYLSSLSEAQFVIA 211

Query: 502 FTRGFSSVLANIAIDTLKDLDEFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKA-KGFL 560
             +   +VL  I +   K+ D      + + ++   S      +  G   D        L
Sbjct: 212 LEK-SQTVLLVIGVTDAKEGDPVG--LAVVSEVKGVSGNNYELKVIGLLEDAFNTRGVIL 268

Query: 561 GDLSNFVVELKLQLAKDIPLDRICAKQQIDLLTAQAWFSEDKRLEEKVR 609
                 V  L +     +          +  L      +    L  K  
Sbjct: 269 AGDIGEVGILNVL--IGLLPIGSEEPIGLVQLIPLDVETVGLALSLKGL 315

Length = 399

>gnl|CDD|238744 cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 27/153 (17%)

Query: 328 DVIFIVDISGSMQ----GKP--LEDTKNALAVALSKLDPGDSFNIVAFNGETYL---FST 378
           D++  +D+SGSM      KP  LE  K  L+  + +    D   +V F G  +     + 
Sbjct: 4   DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLTL 62

Query: 379 SMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE- 437
             E   +   +          +AG  T I   +  A++ L NS     +I L+TDG    
Sbjct: 63  DRESLKELLEDIK------IGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA 116

Query: 438 ---DERQICDAMKSRLTNGGSICPRIYTFGIGS 467
              D     +  K++         RIYT G+G 
Sbjct: 117 GEIDPATAAELAKNKGV-------RIYTIGVGK 142

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif. Length = 180

>gnl|CDD|238739 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 327 KDVIFIVDISGSMQGKPLEDTKN-ALAVALSKLDPGDSFNIVAFNGE--TYLFSTSMELA 383
             VI +VD SGSM G P E  K  ALA+    L       ++ F+ E  T +   + +L 
Sbjct: 1   GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKTDDLE 60

Query: 384 TKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDG 434
             E VE            GG T+I   L  A+E++         I L+TDG
Sbjct: 61  --EPVEFL-----SGVQLGGGTDINKALRYALELIERRDPRKADIVLITDG 104

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have a conserved MIDAS motif, however, their biochemical function is not well characterised. Length = 152

>gnl|CDD|238741 cd01464, vWA_subfamily, VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 29/166 (17%)

Query: 329 VIFIVDISGSMQGKPLEDTKNALAVALSKL--DPGDS----FNIVAFNGETYLFSTSMEL 382
           +  ++D SGSM G+P+E     L +  S+L  DP        +++ F+    +      L
Sbjct: 6   IYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL 65

Query: 383 ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEML----TNSRGSI-----PIIFLVTD 433
                      +      A G T++ A L  A++ +       R        P +FL+TD
Sbjct: 66  E---------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTD 116

Query: 434 GAVEDERQI-CDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478
           G   D+     + +K    + G I        +G   +   L+ + 
Sbjct: 117 GEPTDDLTAAIERIKEARDSKGRIVA----CAVGPKADLDTLKQIT 158

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup have no assigned function. This subfamily is typified by the presence of a conserved MIDAS motif. Length = 176

>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 25/119 (21%)

Query: 329 VIFIVDISGSMQG-KPLEDTKNALAVALSKLDPG----DSFNIVAFNGE--TYL--FSTS 379
           VIF+VD SGSM     +   K A    LS L       D   ++ F GE    L   ++S
Sbjct: 468 VIFVVDASGSMAARGRMAAAKGA---VLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSS 524

Query: 380 MELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDG 434
           +ELA    +E            GG T + A L KA E+L+N         P++ ++TDG
Sbjct: 525 VELA-ARRLEE--------LPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDG 574

Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 329 VIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNG---ETYLF-STSMELA 383
           +IF+VD SGS     + + K A+ + L +     D  +++AF G   E  L  S S+E A
Sbjct: 410 LIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSRSVEQA 469

Query: 384 TKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSI--PIIFLVTDG 434
            K  ++            GG T + A L  A +    +R S   P I L+TDG
Sbjct: 470 -KRRLDV--------LPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDG 513

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

>gnl|CDD|224161 COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme metabolism]

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 25/120 (20%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALA--VALSKLDP----GDSFNIVAFNG---ETYLFST 378
            ++F+VD SGSM        + A A   ALS L       D   ++AF G   E  L  T
Sbjct: 80  LIVFVVDASGSMAA----RRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPT 135

Query: 379 SMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR----GSIPIIFLVTDG 434
           S       +VE A + +      GG T +   L +A E+L   +       P++ ++TDG
Sbjct: 136 S-------SVELAERAL-ERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDG 187

Length = 261

>gnl|CDD|238728 cd01451, vWA_Magnesium_chelatase, Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 24/118 (20%)

Query: 329 VIFIVDISGSMQG-KPLEDTKNALAVALSKLDPG----DSFNIVAFNGE--TYLF--STS 379
           VIF+VD SGSM     +   K A    LS L       D   ++AF G     L   + S
Sbjct: 3   VIFVVDASGSMAARHRMAAAKGA---VLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRS 59

Query: 380 MELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR---GSIPIIFLVTDG 434
           +ELA +                GG T + A L  A E+        G  P+I ++TDG
Sbjct: 60  VELAKRRLAR---------LPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDG 108

In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	613
TIGR03788	596	marine_srt_targ marine proteobacterial sortase tar	100.0
PF08487	118	VIT: Vault protein inter-alpha-trypsin domain; Int	99.92
smart00609	130	VIT Vault protein Inter-alpha-Trypsin domain.	99.92
cd01461	171	vWA_interalpha_trypsin_inhibitor vWA_interalpha tr	99.92
PF13768	155	VWA_3: von Willebrand factor type A domain	99.91
cd01463	190	vWA_VGCC_like VWA Voltage gated Calcium channel li	99.9
cd01465	170	vWA_subgroup VWA subgroup: Von Willebrand factor t	99.88
cd01466	155	vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact	99.88
cd01470	198	vWA_complement_factors Complement factors B and C2	99.85
cd01456	206	vWA_ywmD_type VWA ywmD type:Von Willebrand factor	99.85
PRK13685	326	hypothetical protein; Provisional	99.83
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	99.82
cd01467	180	vWA_BatA_type VWA BatA type: Von Willebrand factor	99.81
cd01480	186	vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI	99.81
cd01453	183	vWA_transcription_factor_IIH_type Transcription fa	99.81
PF13519	172	VWA_2: von Willebrand factor type A domain; PDB: 3	99.8
cd01474	185	vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi	99.8
cd01451	178	vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch	99.8
cd01472	164	vWA_collagen von Willebrand factor (vWF) type A do	99.78
cd01464	176	vWA_subfamily VWA subfamily: Von Willebrand factor	99.78
TIGR02921	952	PEP_integral PEP-CTERM family integral membrane pr	99.78
cd01471	186	vWA_micronemal_protein Micronemal proteins: The To	99.77
TIGR03436	296	acidobact_VWFA VWFA-related Acidobacterial domain.	99.77
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	99.77
cd01469	177	vWA_integrins_alpha_subunit Integrins are a class	99.76
cd01477	193	vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand	99.76
cd01473	192	vWA_CTRP CTRP for CS protein-TRAP-related protein:	99.74
PTZ00441	576	sporozoite surface protein 2 (SSP2); Provisional	99.74
cd01482	164	vWA_collagen_alphaI-XII-like Collagen: The extrace	99.72
cd01450	161	vWFA_subfamily_ECM Von Willebrand factor type A (v	99.7
cd01455	191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	99.7
PF00092	178	VWA: von Willebrand factor type A domain; InterPro	99.69
cd01462	152	VWA_YIEM_type VWA YIEM type: Von Willebrand factor	99.69
cd01454	174	vWA_norD_type norD type: Denitrifying bacteria con	99.68
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	99.67
cd01476	163	VWA_integrin_invertebrates VWA_integrin (invertebr	99.67
COG1240	261	ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis	99.64
smart00327	177	VWA von Willebrand factor (vWF) type A domain. VWA	99.62
cd01481	165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	99.6
cd00198	161	vWFA Von Willebrand factor type A (vWA) domain was	99.6
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.59
COG4245	207	TerY Uncharacterized protein encoded in toxicity p	99.59
PF13757	78	VIT_2: Vault protein inter-alpha-trypsin domain	99.58
KOG2353	1104	consensus L-type voltage-dependent Ca2+ channel, a	99.52
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.51
cd01457	199	vWA_ORF176_type VWA ORF176 type: Von Willebrand fa	99.5
cd01452	187	VWA_26S_proteasome_subunit 26S proteasome plays a	99.39
PF10138	200	vWA-TerF-like: vWA found in TerF C terminus ; Inte	99.35
COG2425	437	Uncharacterized protein containing a von Willebran	99.3
cd01460	266	vWA_midasin VWA_Midasin: Midasin is a member of th	99.29
PRK10997	487	yieM hypothetical protein; Provisional	99.21
cd01458	218	vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter	99.11
PF11775	219	CobT_C: Cobalamin biosynthesis protein CobT VWA do	99.06
PF04056	193	Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro	98.83
TIGR01651	600	CobT cobaltochelatase, CobT subunit. This model de	98.81
PF05762	222	VWA_CoxE: VWA domain containing CoxE-like protein;	98.78
PF09967	126	DUF2201: VWA-like domain (DUF2201); InterPro: IPR0	98.58
COG4867	652	Uncharacterized protein with a von Willebrand fact	98.51
COG4548	637	NorD Nitric oxide reductase activation protein [In	98.46
KOG2807	378	consensus RNA polymerase II transcription initiati	98.34
COG2304	399	Uncharacterized protein containing a von Willebran	98.31
COG4547	620	CobT Cobalamin biosynthesis protein CobT (nicotina	98.3
PF04811	243	Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I	98.28
KOG3768	888	consensus DEAD box RNA helicase [General function	98.26
PF06707	205	DUF1194: Protein of unknown function (DUF1194); In	98.25
cd01459	254	vWA_copine_like VWA Copine: Copines are phospholip	98.25
cd01468	239	trunk_domain trunk domain. COPII-coated vesicles c	98.24
cd01479	244	Sec24-like Sec24-like: Protein and membrane traffi	98.17
PRK05325	401	hypothetical protein; Provisional	97.78
cd01478	267	Sec23-like Sec23-like: Protein and membrane traffi	97.73
PTZ00395	1560	Sec24-related protein; Provisional	97.67
smart00187	423	INB Integrin beta subunits (N-terminal portion of	97.62
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	97.58
PLN00162	761	transport protein sec23; Provisional	97.54
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	97.53
COG3552	395	CoxE Protein containing von Willebrand factor type	97.47
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.45
KOG1985	887	consensus Vesicle coat complex COPII, subunit SEC2	97.4
TIGR00627	279	tfb4 transcription factor tfb4. This family is bas	97.32
PF11443	534	DUF2828: Domain of unknown function (DUF2828); Int	97.26
KOG2884	259	consensus 26S proteasome regulatory complex, subun	97.25
PF03731	224	Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte	97.2
PF07002	146	Copine: Copine; InterPro: IPR010734 This represent	97.18
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	97.14
PF03850	276	Tfb4: Transcription factor Tfb4; InterPro: IPR0046	97.08
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	96.91
COG3864	396	Uncharacterized protein conserved in bacteria [Fun	96.48
TIGR00578	584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	96.39
KOG4465	598	consensus Uncharacterized conserved protein [Funct	96.31
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	96.23
COG5148	243	RPN10 26S proteasome regulatory complex, subunit R	96.12
COG5242	296	TFB4 RNA polymerase II transcription initiation/nu	95.8
COG2718	423	Uncharacterized conserved protein [Function unknow	95.53
PF00362	426	Integrin_beta: Integrin, beta chain; InterPro: IPR	95.25
PF11265	226	Med25_VWA: Mediator complex subunit 25 von Willebr	94.81
COG1721	416	Uncharacterized conserved protein (some members co	94.57
PF14415	253	DUF4424: Domain of unknown function (DUF4424)	94.38
KOG1986	745	consensus Vesicle coat complex COPII, subunit SEC2	93.75
KOG2487	314	consensus RNA polymerase II transcription initiati	91.02
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	87.08
KOG1226	783	consensus Integrin beta subunit (N-terminal portio	80.48

>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein

Probab=100.00  E-value=3.1e-76  Score=662.27  Aligned_cols=506  Identities=24%  Similarity=0.408  Sum_probs=419.3

Q ss_pred             cceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeecccccccc--cccc
Q 007207           88 MNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG--KSAS  165 (613)
Q Consensus        88 ~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~~A~~~~--~~~~  165 (613)
                      .++|+++|+|  .+|+|+++|+|+|   ++++++||.|+||||++|+|++|+|+||||+|+|+|+||++|+++|  ++++
T Consensus         2 ~~~v~~~V~g--~~A~v~v~q~f~N---~~~~~~E~~y~fPLp~~aaV~~f~~~i~~r~i~g~v~eKe~A~~~Ye~a~~~   76 (596)
T TIGR03788         2 DTDANITVTG--LIARTEVTQTFRN---PSQFWVEGRYVFPLPENAAVDSLTMHIGERVIVGQIMPKAAARAIYEQAKAE   76 (596)
T ss_pred             CceEEEEEEc--ceEEEEEEEEEEC---CCCCcEEEEEEeeCCCCcEEEEEEEEECCEEEEEEEeeHHHHHHHHHHHHHh
Confidence            4567777777  7799999999999   7899999999999999999999999999999999999999999655  4577


Q ss_pred             cccCCcc---cCCeeEEecCCCCCCCEEEEEEEEEEEeeccCCeEEEEeeecC-cccccCcccC----------------
Q 007207          166 VETGSFL---KPNIFTLTLPQIDGGSYLSIRLRWSQKLSYRDGEFSVNVPFKF-PEYVTPAIKK----------------  225 (613)
Q Consensus       166 ~~~~~ll---~~n~F~~~V~ni~p~~~v~v~i~Y~q~L~~~~g~~~~~lp~~~-P~~v~p~~~~----------------  225 (613)
                      |++++|+   ++|+|+++|||||||++++|+|+|+|+|.+++|.|++++|+++ |+|..+....                
T Consensus        77 G~~a~Lleq~~~~~F~~~V~nIpp~~~v~i~l~Y~q~L~~~~g~~~~~lP~~~~pry~~~~~~~~~~~~~~~~~~~~~~~  156 (596)
T TIGR03788        77 GKKAALVEQQRPNLFTNKVANIGPGETVVVTIEYQQPVSYSSGTFSLRLPLTVTPRYIPGSTVNTVTDVNNSGWAIPTTQ  156 (596)
T ss_pred             ccceeeeecccCCceeEEeeccCCCCEEEEEEEEEEEeeecCCEEEEEeeeeecCCccCCcccccccccccccccccccc
Confidence            8999998   6999999999999999999999999999999999998887765 6654221100                


Q ss_pred             C-------------------CcccceeeeeecCCCceeeeeCCCCceeeEeecCceEEEeeccccccccCCceEEEEEec
Q 007207          226 I-------------------PKREKIHLNVNAGTGTEVLCNTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTVS  286 (613)
Q Consensus       226 ~-------------------~~~~~i~~~v~~~~~~~v~i~s~sh~l~~~~~~~~~~~~~~~~~~~~~~~~Df~l~~~~~  286 (613)
                      .                   ..++.++++++.+.+.. .+.|++|++++.+...+...++++.. ..++|+||+|.|++.
T Consensus       157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~-~i~s~~h~i~~~~~~~~~~~v~l~~~-~~~~d~Df~l~~~~~  234 (596)
T TIGR03788       157 VPDADKISAPRVLDPDDDAPSSQASINVDLNAGLPLD-SITSPSHPIQIEQQGQSGYTISLAQG-QVIADRDFVLTWRPA  234 (596)
T ss_pred             cccccccCCccccCcccCCCCcceEEEEEecCCCccc-eeeCCCCceEeecCCCceEEEEeCCC-CcCCCCCEEEEEEeC
Confidence            0                   01233444455444322 57899999998776656666666542 358999999999997


Q ss_pred             CCCcccceEEeCCCCCCCCCcceEEEEEecCCC-CCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEE
Q 007207          287 PSHIFGGVLLQSPSLHDVDQREMFCMYLLPGTA-KSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFN  365 (613)
Q Consensus       287 ~~~~~~~v~~~~~~~~~~d~~~~f~~~~~P~~~-~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~  365 (613)
                      ..+.. .+++..   +..++.+||++.+.|+.. ......+++++||||+||||.|.+++.+|+++..++..|+++|+|+
T Consensus       235 ~~~~p-~~~~~~---~~~~~~~y~~~~~~pp~~~~~~~~~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d~~~  310 (596)
T TIGR03788       235 QGEAP-SAALFR---EQIGGERYGLAMVMPPTEAAVAQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFN  310 (596)
T ss_pred             CCCCc-eEEEEE---EccCCCcEEEEEEeCCCccccccCCCceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCCEEE
Confidence            66543 332221   112456789888888763 3346788999999999999999999999999999999999999999


Q ss_pred             EEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcC-CCCccEEEEEecCCcCchhHHHH
Q 007207          366 IVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS-RGSIPIIFLVTDGAVEDERQICD  444 (613)
Q Consensus       366 Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~~-~~~~~~IillTDG~~~~~~~~~~  444 (613)
                      |+.|++++..+.+.+..++..++..+.++|. .+.++|||+++.||+.|++..... .+..+.|||||||..+++..+.+
T Consensus       311 ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~~~~~~~  389 (596)
T TIGR03788       311 IIQFDSDVTLLFPVPVPATAHNLARARQFVA-GLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGNEDALFQ  389 (596)
T ss_pred             EEEECCcceEeccccccCCHHHHHHHHHHHh-hCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCCHHHHHH
Confidence            9999999998888777789999999999998 788999999999999999874322 34567899999999887776666


Q ss_pred             HHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEEEecCCCCce
Q 007207          445 AMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLDEF  524 (613)
Q Consensus       445 ~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l~~~~~~~~~  524 (613)
                      .++...     .+.+||+||||.++|..+|+.||+.++|.|+++.+.+++..+|.+++.++.+|+++|+.++|.. ....
T Consensus       390 ~~~~~~-----~~~ri~tvGiG~~~n~~lL~~lA~~g~G~~~~i~~~~~~~~~~~~~l~~~~~p~l~~v~v~~~~-~~~~  463 (596)
T TIGR03788       390 LIRTKL-----GDSRLFTVGIGSAPNSYFMRKAAQFGRGSFTFIGSTDEVQRKMSQLFAKLEQPALTDIALTFDN-GNAA  463 (596)
T ss_pred             HHHHhc-----CCceEEEEEeCCCcCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHHHHhhcCeEEEEEEEEEcC-Cccc
Confidence            654331     2379999999999999999999999999999999999999999999999999999999999964 3467


Q ss_pred             eeccCCCCCCCCCCcEEEEEEEcCCCCCeEEEEEEeCCcccEEEEEeccc-cCCCcHHHHHHHHHHHHHHHHHhhc-CCh
Q 007207          525 EMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQL-AKDIPLDRICAKQQIDLLTAQAWFS-EDK  602 (613)
Q Consensus       525 ~v~p~~ip~l~~g~~~~v~g~~~~~~~~~v~l~g~~~~~~~~~~~l~~~~-~~~~~l~~lwA~~~I~~L~~~~~~~-~~~  602 (613)
                      +++|..+|+||.|++++|+||+ +..+.+++++|..+++. |+.++++.. ..+..|++|||+++|++|+++.|.. +.+
T Consensus       464 ~v~P~~~p~L~~g~~l~v~g~~-~~~~~~i~v~g~~~~~~-~~~~~~~~~~~~~~~l~~lwA~~~I~~L~~~~~~~~~~~  541 (596)
T TIGR03788       464 DVYPSPIPDLYRGEPLQIAIKL-QQAAGELQLTGRTGSQP-WSQQLDLDSAAPGKGIDKLWARRKIDSLEDSLRYGANEE  541 (596)
T ss_pred             eeccCCCccccCCCEEEEEEEe-cCCCCeEEEEEEcCCce-EEEEEecCCCCCcchHHHHHHHHHHHHHHHHHhhcCCcH
Confidence            9999999999999999999996 45688999999988864 888888864 3457799999999999999887644 456


Q ss_pred             HHHHHhhhccC
Q 007207          603 RLEEKVRCSAI  613 (613)
Q Consensus       603 ~l~~~v~~ls~  613 (613)
                      +++++|++||+
T Consensus       542 ~~~~~Ii~Lsl  552 (596)
T TIGR03788       542 KVKDQVTALAL  552 (596)
T ss_pred             HHHHHHHHHHH
Confidence            79999999985

Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).

>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains

Probab=99.92  E-value=4.1e-25  Score=195.52  Aligned_cols=110  Identities=20%  Similarity=0.307  Sum_probs=100.0

Q ss_pred             ccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeecccccccc-
Q 007207           83 LIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAG-  161 (613)
Q Consensus        83 ~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~~A~~~~-  161 (613)
                      .+||++..|+++|.+  .+|+|+++|+|.|   ++++++|+.|.||||++|+|++|+|+||||+|+|+|+||++|++.| 
T Consensus         2 ~~~l~s~~v~~~I~~--~~a~t~v~q~f~N---~~~~~~E~~y~fpLp~~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~   76 (118)
T PF08487_consen    2 QVPLKSVHVKVTIID--RFARTTVTQTFEN---PSSEPLEAVYSFPLPEGAAISGFSMWIGGRTIEGEVKEKEEAKQEYE   76 (118)
T ss_pred             CceEEEEEEEEEEEc--cEEEEEEEEEEEC---CCCCcEEEEEEeECCCCeEEEEEEEEECCEEEEEEEecHHHHHHHHH
Confidence            467888777777777  7799999999999   7899999999999999999999999999999999999999999654 


Q ss_pred             -cccccccCCcc---cCCe--eEEecCCCCCCCEEEEEEEEEE
Q 007207          162 -KSASVETGSFL---KPNI--FTLTLPQIDGGSYLSIRLRWSQ  198 (613)
Q Consensus       162 -~~~~~~~~~ll---~~n~--F~~~V~ni~p~~~v~v~i~Y~q  198 (613)
                       ++++|++++|+   +++.  |+++| |||||++++|+|+|+|
T Consensus        77 ~a~~~g~~a~lle~~~~~~~~F~~~v-ni~p~~~v~i~l~Y~e  118 (118)
T PF08487_consen   77 EAVAQGKSAALLEQSDPNVEVFTVSV-NIPPNEEVTIELTYVE  118 (118)
T ss_pred             HHHHcCCCchhhcccCCCCcEEEEEE-EeCCCCEEEEEEEEEC
Confidence             56789999998   4677  99999 9999999999999986

ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.

>smart00609 VIT Vault protein Inter-alpha-Trypsin domain

Probab=99.92  E-value=1.2e-24  Score=194.19  Aligned_cols=112  Identities=16%  Similarity=0.184  Sum_probs=101.6

Q ss_pred             CcccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeeccccccc
Q 007207           81 PSLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGA  160 (613)
Q Consensus        81 ~~~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~~A~~~  160 (613)
                      ...+||++.+|+++|.+  .+|+|+++|+|.|   +++.+.|+.|.||||++|+|++|+|+||||+|.|+|+||++|+++
T Consensus        12 ~~~~pL~s~~v~~~I~~--~~a~t~vtq~f~N---~~~~~~e~~~~~~lp~~A~v~~~~~~i~~r~i~g~vkeK~~Ar~~   86 (130)
T smart00609       12 VNGVPLYSLKVNSKVTS--RFAHTVVTSRVVN---RAVPAQEVTFDVELPKTAFISNFAMTIDGKTYVGEIKEKEVAQKQ   86 (130)
T ss_pred             CCccceEEEEEEEEEEC--CEEEEEEEEEEEC---CCCCceEEEEEcCCCCCcEEEeEEEEECCEEEEEEEeeHHHHHHH
Confidence            35788888888888888  7799999999999   678889999999999999999999999999999999999999965


Q ss_pred             c--cccccccCCcc---cC--CeeEEecCCCCCCCEEEEEEEEEE
Q 007207          161 G--KSASVETGSFL---KP--NIFTLTLPQIDGGSYLSIRLRWSQ  198 (613)
Q Consensus       161 ~--~~~~~~~~~ll---~~--n~F~~~V~ni~p~~~v~v~i~Y~q  198 (613)
                      |  ++++|++++|+   ++  |+|+++| |||||++++|+|+|+|
T Consensus        87 Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg~~v~v~l~Y~e  130 (130)
T smart00609       87 YEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPGSKVTFELTYEE  130 (130)
T ss_pred             HHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCCCEEEEEEEEEC
Confidence            4  55789999998   56  9999999 9999999999999985

>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)

Probab=99.92  E-value=1.1e-23  Score=199.46  Aligned_cols=169  Identities=44%  Similarity=0.635  Sum_probs=145.9

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST  405 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT  405 (613)
                      |++++||||+||||.+.+++.+++++..++..++++++|+|+.|+++...+.+.....+..++.++++++. .+.++|+|
T Consensus         2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~g~T   80 (171)
T cd01461           2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVN-RLQALGGT   80 (171)
T ss_pred             CceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHH-hcCCCCCc
Confidence            78999999999999999999999999999999999999999999999887765544556778888888887 67789999


Q ss_pred             chHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEE
Q 007207          406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY  485 (613)
Q Consensus       406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~  485 (613)
                      ++..||..|++.+...++..+.||++|||..++..++.+.+++..    ..+++||+||+|.+.+..+|+.||+.+||.|
T Consensus        81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~----~~~i~i~~i~~g~~~~~~~l~~ia~~~gG~~  156 (171)
T cd01461          81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREAL----SGRIRLFTFGIGSDVNTYLLERLAREGRGIA  156 (171)
T ss_pred             CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhc----CCCceEEEEEeCCccCHHHHHHHHHcCCCeE
Confidence            999999999999876556678999999999877666555555432    2258999999999889999999999999999


Q ss_pred             EEcCCCcHHHHHHH
Q 007207          486 GAAYDLDSIEIQMQ  499 (613)
Q Consensus       486 ~~v~~~~~l~~~l~  499 (613)
                      +++.+.+++.+++.
T Consensus       157 ~~~~~~~~~~~~~~  170 (171)
T cd01461         157 RRIYETDDIESQLL  170 (171)
T ss_pred             EEecChHHHHHHhc
Confidence            99999999988764

Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.

>PF13768 VWA_3: von Willebrand factor type A domain

Probab=99.91  E-value=8.5e-24  Score=197.30  Aligned_cols=153  Identities=39%  Similarity=0.580  Sum_probs=134.2

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC-CCCc
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA-GGST  405 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~-~GgT  405 (613)
                      .+++||||+|+||.|.+ +.+|+++..+++.|+++++|+|+.|++++..+.+...+++.++++++.+||+ .+.+ .|+|
T Consensus         1 ~~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~-~~~~~~G~t   78 (155)
T PF13768_consen    1 ADVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIK-SLEANSGGT   78 (155)
T ss_pred             CeEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHH-HhcccCCCc
Confidence            37999999999999988 9999999999999999999999999999998888888889999999999998 6777 9999


Q ss_pred             chHHHHHHHHHHHhcCCCCccEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcE
Q 007207          406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY  484 (613)
Q Consensus       406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~  484 (613)
                      ++..||+.|+..+ ..++..+.|+|+|||.+ +.+..+.+.+++.    . ..+++|++|+|...+..+|+.||+.++|.
T Consensus        79 ~l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~~~~~i~~~v~~~----~-~~~~i~~~~~g~~~~~~~L~~LA~~~~G~  152 (155)
T PF13768_consen   79 DLLAALRAALALL-QRPGCVRAIILLTDGQPVSGEEEILDLVRRA----R-GHIRIFTFGIGSDADADFLRELARATGGS  152 (155)
T ss_pred             cHHHHHHHHHHhc-ccCCCccEEEEEEeccCCCCHHHHHHHHHhc----C-CCceEEEEEECChhHHHHHHHHHHcCCCE
Confidence            9999999999886 34556789999999996 4445555555432    1 34899999999999999999999999999


Q ss_pred             EEE
Q 007207          485 YGA  487 (613)
Q Consensus       485 ~~~  487 (613)
                      |.+
T Consensus       153 ~~f  155 (155)
T PF13768_consen  153 FHF  155 (155)
T ss_pred             EEC
Confidence            864

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta

Probab=99.90  E-value=7.5e-23  Score=197.56  Aligned_cols=166  Identities=27%  Similarity=0.397  Sum_probs=135.1

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeecccc----ccCHHHHHHHHHHHhhc
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSME----LATKEAVERAHQWIGIN  398 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~----~~~~~~~~~a~~~i~~~  398 (613)
                      ...|++++||||+||||.+.+++.+|+++..+++.|+++++|+|+.|++++..+.+...    ..+..+.+.+.++|. .
T Consensus        10 ~~~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~   88 (190)
T cd01463          10 ATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEALD-M   88 (190)
T ss_pred             ccCCceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHHh-h
Confidence            35789999999999999999999999999999999999999999999999887765322    234567777788886 7


Q ss_pred             CCCCCCcchHHHHHHHHHHHhc---C------CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207          399 FIAGGSTNICAPLTKAVEMLTN---S------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC  469 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~---~------~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~  469 (613)
                      +.++|+|++..||..|++.+..   .      +...+.|||||||.+++...........  .....+++||+||+|.+.
T Consensus        89 l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~--~~~~~~v~i~tigiG~~~  166 (190)
T cd01463          89 LEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYNWD--KNSEIPVRVFTYLIGREV  166 (190)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhccc--ccCCCcEEEEEEecCCcc
Confidence            8889999999999999998875   1      1335689999999988765544433211  122346899999999985


Q ss_pred             -CHHHHHHHHHhcCcEEEEcCCC
Q 007207          470 -NHYFLRMLAMISRGYYGAAYDL  491 (613)
Q Consensus       470 -~~~~L~~lA~~~gG~~~~v~~~  491 (613)
                       |..+|+.||..++|.|+++.+.
T Consensus       167 ~d~~~L~~lA~~~~G~~~~i~~~  189 (190)
T cd01463         167 TDRREIQWMACENKGYYSHIQSL  189 (190)
T ss_pred             ccchHHHHHHhhcCCeEEEcccC
Confidence             8999999999999999998874

The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.

>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.88  E-value=1.1e-21  Score=185.69  Aligned_cols=166  Identities=23%  Similarity=0.308  Sum_probs=132.0

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcch
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNI  407 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l  407 (613)
                      +++||+|+||||.+.+++.+|+++..++..++++++++++.|+++...+.+.....+.   ..+.+.+. .+.++|+|++
T Consensus         2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~~~~~~~~~~~~---~~l~~~l~-~~~~~g~T~~   77 (170)
T cd01465           2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLPATPVRDK---AAILAAID-RLTAGGSTAG   77 (170)
T ss_pred             cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCEEEEEEecCCccEEecCcccchH---HHHHHHHH-cCCCCCCCCH
Confidence            6899999999999989999999999999999999999999999998887765443334   34444554 5667899999


Q ss_pred             HHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEE
Q 007207          408 CAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYY  485 (613)
Q Consensus       408 ~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~  485 (613)
                      ..+|..|++.+....  ...+.|||+|||.+++.....+.+.+.++.....+++||+||+|...+..+|+.||+.++|.|
T Consensus        78 ~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~~~~g~~  157 (170)
T cd01465          78 GAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIADAGNGNT  157 (170)
T ss_pred             HHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHhcCCceE
Confidence            999999999886532  223689999999986543222333333333234468999999999899999999999999999


Q ss_pred             EEcCCCcHHHHH
Q 007207          486 GAAYDLDSIEIQ  497 (613)
Q Consensus       486 ~~v~~~~~l~~~  497 (613)
                      +++.+.+++++.
T Consensus       158 ~~~~~~~~~~~~  169 (170)
T cd01465         158 AYIDNLAEARKV  169 (170)
T ss_pred             EEeCCHHHHHhh
Confidence            999999888754

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n

>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.88  E-value=1.8e-21  Score=181.60  Aligned_cols=153  Identities=28%  Similarity=0.429  Sum_probs=125.5

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcc
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTN  406 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~  406 (613)
                      .+++||||.||||.+.|++.+|+++..+++.|+++++++|+.|+++++.+.++.. .+..+...+.+++. .+.++|+|+
T Consensus         1 ~~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~~~~~~~-~~~~~~~~~~~~i~-~~~~~g~T~   78 (155)
T cd01466           1 VDLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSPLRR-MTAKGKRSAKRVVD-GLQAGGGTN   78 (155)
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcceEEEEEecCCccccCCCcc-cCHHHHHHHHHHHH-hccCCCCcc
Confidence            3789999999999999999999999999999999999999999999888776542 34445566667776 678899999


Q ss_pred             hHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcE
Q 007207          407 ICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY  484 (613)
Q Consensus       407 l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~  484 (613)
                      ++.||..|.+.+....  +..+.|||+|||.+++...    +.    .....++.+|+||+|...+...|+.||+.++|.
T Consensus        79 ~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~----~~----~~~~~~v~v~~igig~~~~~~~l~~iA~~t~G~  150 (155)
T cd01466          79 VVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAV----VL----RADNAPIPIHTFGLGASHDPALLAFIAEITGGT  150 (155)
T ss_pred             HHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchh----hh----cccCCCceEEEEecCCCCCHHHHHHHHhccCce
Confidence            9999999999986532  3356899999999866411    11    112346899999999888999999999999999


Q ss_pred             EEEcC
Q 007207          485 YGAAY  489 (613)
Q Consensus       485 ~~~v~  489 (613)
                      |+++.
T Consensus       151 ~~~~~  155 (155)
T cd01466         151 FSYVK  155 (155)
T ss_pred             EEEeC
Confidence            99873

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,

>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation

Probab=99.85  E-value=1.3e-20  Score=183.18  Aligned_cols=169  Identities=18%  Similarity=0.289  Sum_probs=125.8

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCC----
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFI----  400 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~----  400 (613)
                      +++||||+||||.+.+++.+|+++..+++.|..   +++++|+.|++++..+.++... ...+...++..|. .+.    
T Consensus         2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~~   79 (198)
T cd01470           2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDF-NSNDADDVIKRLE-DFNYDDH   79 (198)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccC-CCCCHHHHHHHHH-hCCcccc
Confidence            799999999999999999999999999998863   7899999999999887766432 2222334444443 222    


Q ss_pred             -CCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCch---hHHHHHHHHHHHcC------CCCCceEEE
Q 007207          401 -AGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVEDE---RQICDAMKSRLTNG------GSICPRIYT  462 (613)
Q Consensus       401 -~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~~---~~~~~~~~~~~~~~------~~~~~~i~t  462 (613)
                       .+|||+++.||+.+.+.+...        ....+.|||||||.++..   ....+.+++.+...      ...+++||+
T Consensus        80 ~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~  159 (198)
T cd01470          80 GDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYV  159 (198)
T ss_pred             cCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEE
Confidence             458999999999998876311        123568999999998642   22334444433221      234589999


Q ss_pred             EEecCCCCHHHHHHHHHhcCc--EEEEcCCCcHHHHHH
Q 007207          463 FGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQM  498 (613)
Q Consensus       463 igiG~~~~~~~L~~lA~~~gG--~~~~v~~~~~l~~~l  498 (613)
                      ||+|.+.|...|+.||..++|  +++.+.+.++|.+.+
T Consensus       160 iGvG~~~~~~~L~~iA~~~~g~~~~f~~~~~~~l~~v~  197 (198)
T cd01470         160 FGVGDDVNKEELNDLASKKDNERHFFKLKDYEDLQEVF  197 (198)
T ss_pred             EecCcccCHHHHHHHhcCCCCCceEEEeCCHHHHHHhc
Confidence            999999999999999999998  578888888776653

They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.

>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.85  E-value=2.8e-20  Score=181.98  Aligned_cols=167  Identities=19%  Similarity=0.285  Sum_probs=124.6

Q ss_pred             CCCCCceEEEEEeCCCCCC------CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcce------eee---cccccc---
Q 007207          322 RKVFKKDVIFIVDISGSMQ------GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETY------LFS---TSMELA---  383 (613)
Q Consensus       322 ~~~~~~~vvfviD~SgSM~------g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~------~~~---~~~~~~---  383 (613)
                      ....+.+++||||+||||.      +.|++.+|+++..+++.++++++|+|+.|++...      ...   +.+...   
T Consensus        16 ~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~   95 (206)
T cd01456          16 EPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGF   95 (206)
T ss_pred             ccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccccccccCCC
Confidence            3556899999999999998      5799999999999999999999999999999532      111   111110   


Q ss_pred             CHHHHHHHHHHHhhcCC-CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcC-CCCCceEE
Q 007207          384 TKEAVERAHQWIGINFI-AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIY  461 (613)
Q Consensus       384 ~~~~~~~a~~~i~~~~~-~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~-~~~~~~i~  461 (613)
                      ...+...+.+.|+ .+. ++|+|++..+|+.|.+.+.  .+..+.|||+|||..++.....+.+.+..+.. ...+++||
T Consensus        96 ~~~~~~~l~~~i~-~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~  172 (206)
T cd01456          96 PSAQRSALDAALN-SLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVN  172 (206)
T ss_pred             CcccHHHHHHHHH-hhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEE
Confidence            0023344444554 555 8999999999999999985  34447999999999876544444444443321 12458999


Q ss_pred             EEEecCCCCHHHHHHHHHhcCcEE-EEcCCC
Q 007207          462 TFGIGSYCNHYFLRMLAMISRGYY-GAAYDL  491 (613)
Q Consensus       462 tigiG~~~~~~~L~~lA~~~gG~~-~~v~~~  491 (613)
                      +||+|.+.+..+|+.||+.++|.| +.+.+.
T Consensus       173 ~igiG~~~~~~~l~~iA~~tgG~~~~~~~~~  203 (206)
T cd01456         173 VIDFGGDADRAELEAIAEATGGTYAYNQSDL  203 (206)
T ss_pred             EEEecCcccHHHHHHHHHhcCCeEecccccc
Confidence            999999999999999999999999 665543

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>PRK13685 hypothetical protein; Provisional

Probab=99.83  E-value=2.6e-19  Score=187.06  Aligned_cols=172  Identities=19%  Similarity=0.253  Sum_probs=135.8

Q ss_pred             CCCceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc
Q 007207          324 VFKKDVIFIVDISGSMQG-----KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN  398 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~  398 (613)
                      ..+.+++||+|+||||.+     +|++.+|+++..+++.++++++++++.|++++....|.+.  +.+.+..+++    .
T Consensus        86 ~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~~~p~t~--d~~~l~~~l~----~  159 (326)
T PRK13685         86 RNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATVLVSPTT--NREATKNAID----K  159 (326)
T ss_pred             CCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceeecCCCCC--CHHHHHHHHH----h
Confidence            346789999999999986     5899999999999999988999999999999988877654  6777776666    4


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCchh------HHHHHHHHHHHcCCCCCceEEEEE
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVEDER------QICDAMKSRLTNGGSICPRIYTFG  464 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~~~------~~~~~~~~~~~~~~~~~~~i~tig  464 (613)
                      +.++|+|+++.+|..|++.+...        ....+.||++|||..+.+.      ..... .+.++   +.+++||+||
T Consensus       160 l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~a-a~~a~---~~gi~i~~Ig  235 (326)
T PRK13685        160 LQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTA-ARTAK---DQGVPISTIS  235 (326)
T ss_pred             CCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHH-HHHHH---HcCCeEEEEE
Confidence            56789999999999999987631        2235689999999976432      11122 22222   2358999999


Q ss_pred             ecCC--------------CCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207          465 IGSY--------------CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG  505 (613)
Q Consensus       465 iG~~--------------~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~  505 (613)
                      +|..              .|...|++||+.+||.|+++.+.+++.+.+.++-+.+
T Consensus       236 ~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~~~~~~L~~if~~I~~~~  290 (326)
T PRK13685        236 FGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTAASLEELRAVYATLQQQI  290 (326)
T ss_pred             ECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEcCCHHHHHHHHHHHHHHh
Confidence            9974              4788999999999999999999888887777765543

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=99.82  E-value=9.4e-19  Score=197.85  Aligned_cols=171  Identities=21%  Similarity=0.251  Sum_probs=130.1

Q ss_pred             CCCCCceEEEEEeCCCCCCC-CcHHHHHHHHHHHHH-hCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          322 RKVFKKDVIFIVDISGSMQG-KPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       322 ~~~~~~~vvfviD~SgSM~g-~~~~~ak~al~~~l~-~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      .+...+.++||||+||||.+ +++..+|+|+..++. .++++|+++||.|++.+....++....+....+.....+.  .
T Consensus       300 lq~~~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L~--~  377 (863)
T TIGR00868       300 LKIRQRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANLP--T  377 (863)
T ss_pred             cccCCceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhhc--c
Confidence            34566789999999999986 589999999998764 5778999999999999988777654334444444444443  4


Q ss_pred             CCCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          400 IAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      .++|||+|+.||..|++.+.+..  ...+.|||||||..+........    +++   .+++||+||+|.+.+. .|+.|
T Consensus       378 ~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~~~~l~~----lk~---~gVtI~TIg~G~dad~-~L~~I  449 (863)
T TIGR00868       378 AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTISSCFEE----VKQ---SGAIIHTIALGPSAAK-ELEEL  449 (863)
T ss_pred             ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCHHHHHHH----HHH---cCCEEEEEEeCCChHH-HHHHH
Confidence            58899999999999999997653  24579999999998765433322    222   3589999999998665 58999


Q ss_pred             HHhcCcEEEEcCCCcHH---HHHHHHHH
Q 007207          478 AMISRGYYGAAYDLDSI---EIQMQKLF  502 (613)
Q Consensus       478 A~~~gG~~~~v~~~~~l---~~~l~~~~  502 (613)
                      |+.+||.++++.+..++   .++|.++.
T Consensus       450 A~~TGG~~f~asd~~dl~~L~dAF~~is  477 (863)
T TIGR00868       450 SDMTGGLRFYASDQADNNGLIDAFGALS  477 (863)
T ss_pred             HHhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence            99999999999886654   44444443

distributions. found a row in 1A13.INFO that was not parsed out

>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.81  E-value=1.2e-18  Score=166.50  Aligned_cols=161  Identities=25%  Similarity=0.292  Sum_probs=126.2

Q ss_pred             CceEEEEEeCCCCCCCC------cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          326 KKDVIFIVDISGSMQGK------PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~------~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      +.+++||||+|+||...      +++.++.++..++... ++++++++.|++......+.+.  +...+.++++.+. ..
T Consensus         2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~~~~~--~~~~~~~~l~~l~-~~   77 (180)
T cd01467           2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLTL--DRESLKELLEDIK-IG   77 (180)
T ss_pred             CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEEcCCeeeccCCCc--cHHHHHHHHHHhh-hc
Confidence            57899999999999743      6789999998888654 6899999999998877666543  5666777777665 44


Q ss_pred             CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecC-----------C
Q 007207          400 IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS-----------Y  468 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~-----------~  468 (613)
                      ..+|+|+++.||..+++.+.......+.|||+|||..+..........+.+++   .+++||+||+|.           +
T Consensus        78 ~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~---~gi~i~~i~ig~~~~~~~~~~~~~  154 (180)
T cd01467          78 LAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKN---KGVRIYTIGVGKSGSGPKPDGSTI  154 (180)
T ss_pred             ccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHH---CCCEEEEEEecCCCCCcCCCCccc
Confidence            56899999999999999997665566899999999876542222222333322   348999999998           4


Q ss_pred             CCHHHHHHHHHhcCcEEEEcCCCcH
Q 007207          469 CNHYFLRMLAMISRGYYGAAYDLDS  493 (613)
Q Consensus       469 ~~~~~L~~lA~~~gG~~~~v~~~~~  493 (613)
                      .+...|+.||+.++|.|+++.+.++
T Consensus       155 ~~~~~l~~la~~tgG~~~~~~~~~~  179 (180)
T cd01467         155 LDEDSLVEIADKTGGRIFRALDGFE  179 (180)
T ss_pred             CCHHHHHHHHHhcCCEEEEecCccc
Confidence            6889999999999999999988764

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=99.81  E-value=6.6e-19  Score=169.41  Aligned_cols=161  Identities=17%  Similarity=0.206  Sum_probs=123.3

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---------CCCCeEEEEEeCCcceeeecccc-ccCHHHHHHHHHH
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---------DPGDSFNIVAFNGETYLFSTSME-LATKEAVERAHQW  394 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---------~~~d~~~Ii~F~~~~~~~~~~~~-~~~~~~~~~a~~~  394 (613)
                      +|.|++||||.|+||.+.+++.+|++++.+++.|         +.+++++|+.|++.+....++.. ..+...+.++++.
T Consensus         1 c~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~~~~~~~l~~~i~~   80 (186)
T cd01480           1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAVDN   80 (186)
T ss_pred             CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccccCCHHHHHHHHHh
Confidence            5789999999999999999999999999998888         23689999999999988777653 2456666666664


Q ss_pred             HhhcCCCCCCcchHHHHHHHHHHHhc--CCCCccEEEEEecCCcCch--hHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207          395 IGINFIAGGSTNICAPLTKAVEMLTN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCN  470 (613)
Q Consensus       395 i~~~~~~~GgT~l~~aL~~A~~~l~~--~~~~~~~IillTDG~~~~~--~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~  470 (613)
                      +.   ..+|+|+++.||..|.+.+..  .++..+.|||+|||..+..  ....+.+ +.++   ..++.||+||+|. .|
T Consensus        81 l~---~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~-~~~~---~~gi~i~~vgig~-~~  152 (186)
T cd01480          81 LE---YIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAV-NEAD---HLGIKIFFVAVGS-QN  152 (186)
T ss_pred             Cc---cCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHH-HHHH---HCCCEEEEEecCc-cc
Confidence            42   358999999999999999874  3456789999999987432  2222222 2233   2358999999999 78


Q ss_pred             HHHHHHHHHhcCcEEEEcCCCcHH
Q 007207          471 HYFLRMLAMISRGYYGAAYDLDSI  494 (613)
Q Consensus       471 ~~~L~~lA~~~gG~~~~v~~~~~l  494 (613)
                      ...|+.||..+++.|+ ..+..++
T Consensus       153 ~~~L~~IA~~~~~~~~-~~~~~~l  175 (186)
T cd01480         153 EEPLSRIACDGKSALY-RENFAEL  175 (186)
T ss_pred             hHHHHHHHcCCcchhh-hcchhhh
Confidence            8999999999988744 4444433

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme

Probab=99.81  E-value=1.2e-18  Score=166.59  Aligned_cols=163  Identities=16%  Similarity=0.235  Sum_probs=125.5

Q ss_pred             ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHhC---CCCCeEEEEEe-CCcceeeeccccccCHHHHHHHHHHHhh
Q 007207          327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSKL---DPGDSFNIVAF-NGETYLFSTSMELATKEAVERAHQWIGI  397 (613)
Q Consensus       327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~L---~~~d~~~Ii~F-~~~~~~~~~~~~~~~~~~~~~a~~~i~~  397 (613)
                      ++++|+||.|+||..     +|++.+|.++..|++.+   .+++++++++| ++.++...|++.  +.+.+...++.+  
T Consensus         4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~--D~~~~~~~L~~~--   79 (183)
T cd01453           4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTG--NPRKHIQALKTA--   79 (183)
T ss_pred             eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCC--CHHHHHHHhhcc--
Confidence            689999999999985     59999999999999864   57899999999 788999988866  555444444322  


Q ss_pred             cCCCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207          398 NFIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR  475 (613)
Q Consensus       398 ~~~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~  475 (613)
                       ....|||+++.||..|++.+...+.  ..+.|||+|||...+.....+ +.+.+++   .+++||+||+|.  +..+|+
T Consensus        80 -~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~-~~~~l~~---~~I~v~~IgiG~--~~~~L~  152 (183)
T cd01453          80 -RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPGNIYE-TIDKLKK---ENIRVSVIGLSA--EMHICK  152 (183)
T ss_pred             -cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChhhHHH-HHHHHHH---cCcEEEEEEech--HHHHHH
Confidence             3567889999999999999975332  245788889987655443333 3333333   248999999996  456899


Q ss_pred             HHHHhcCcEEEEcCCCcHHHHHHHH
Q 007207          476 MLAMISRGYYGAAYDLDSIEIQMQK  500 (613)
Q Consensus       476 ~lA~~~gG~~~~v~~~~~l~~~l~~  500 (613)
                      .||+.+||.|+.+.+.+++.+.+.+
T Consensus       153 ~ia~~tgG~~~~~~~~~~l~~~~~~  177 (183)
T cd01453         153 EICKATNGTYKVILDETHLKELLLE  177 (183)
T ss_pred             HHHHHhCCeeEeeCCHHHHHHHHHh
Confidence            9999999999999988777665554

Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.

>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A

Probab=99.80  E-value=2e-18  Score=162.86  Aligned_cols=165  Identities=32%  Similarity=0.484  Sum_probs=128.1

Q ss_pred             eEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          328 DVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       328 ~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      |++||+|.||||.+.     +++.++.++..+++.++ +++|+|+.|++......+.+  .+...+.++++.+.......
T Consensus         1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~f~~~~~~~~~~t--~~~~~~~~~l~~~~~~~~~~   77 (172)
T PF13519_consen    1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLP-GDRVGLVSFSDSSRTLSPLT--SDKDELKNALNKLSPQGMPG   77 (172)
T ss_dssp             EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHT-TSEEEEEEESTSCEEEEEEE--SSHHHHHHHHHTHHHHG--S
T ss_pred             CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCC-CCEEEEEEeccccccccccc--ccHHHHHHHhhcccccccCc
Confidence            689999999999976     69999999999999875 77999999999988777765  48888888888877555678


Q ss_pred             CCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC-HHHHHHHHHhc
Q 007207          403 GSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN-HYFLRMLAMIS  481 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~-~~~L~~lA~~~  481 (613)
                      |+|++..||..|.+++.......+.||++|||.++...  .+.++. +++   .++++|+|++|...+ ...|+.||+.+
T Consensus        78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~~~--~~~~~~-~~~---~~i~i~~v~~~~~~~~~~~l~~la~~t  151 (172)
T PF13519_consen   78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNSSD--IEAAKA-LKQ---QGITIYTVGIGSDSDANEFLQRLAEAT  151 (172)
T ss_dssp             SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHCHH--HHHHHH-HHC---TTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred             cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCcch--hHHHHH-HHH---cCCeEEEEEECCCccHHHHHHHHHHhc
Confidence            99999999999999998765567899999999876322  233333 332   348999999998765 48999999999


Q ss_pred             CcEEEEc-CCCcHHHHHHHHH
Q 007207          482 RGYYGAA-YDLDSIEIQMQKL  501 (613)
Q Consensus       482 gG~~~~v-~~~~~l~~~l~~~  501 (613)
                      ||.|+.+ .+.+++.+.|+++
T Consensus       152 gG~~~~~~~~~~~l~~~~~~I  172 (172)
T PF13519_consen  152 GGRYFHVDNDPEDLDDAFQQI  172 (172)
T ss_dssp             EEEEEEE-SSSHHHHHHHHH-
T ss_pred             CCEEEEecCCHHHHHHHHhcC
Confidence            9999999 6788888777653

>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax

Probab=99.80  E-value=4e-18  Score=163.85  Aligned_cols=175  Identities=15%  Similarity=0.219  Sum_probs=128.3

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      .+.|++||||.||||.+. +...++.++.+++.+ .+++||+|+.|+++++...+++.  ....+.++++.+. .+.++|
T Consensus         3 ~~~Dvv~llD~SgSm~~~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~~~l~~--~~~~~~~~l~~l~-~~~~~g   78 (185)
T cd01474           3 GHFDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKILPLTD--DSSAIIKGLEVLK-KVTPSG   78 (185)
T ss_pred             CceeEEEEEeCcCchhhh-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEEEeccc--cHHHHHHHHHHHh-ccCCCC
Confidence            467999999999999874 444556677776654 46799999999999998888765  3335566666665 566789


Q ss_pred             CcchHHHHHHHHHHHhcC-C-C--CccEEEEEecCCcCc--hhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          404 STNICAPLTKAVEMLTNS-R-G--SIPIIFLVTDGAVED--ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~-~-~--~~~~IillTDG~~~~--~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      +|+++.||+.|.+.+... . +  ..+.|||+|||..++  ........ +.+++   .++.||+||+| +.+...|+.|
T Consensus        79 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~~~~~~a-~~l~~---~gv~i~~vgv~-~~~~~~L~~i  153 (185)
T cd01474          79 QTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEA-KLSRK---LGAIVYCVGVT-DFLKSQLINI  153 (185)
T ss_pred             CCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCcchHHHH-HHHHH---cCCEEEEEeec-hhhHHHHHHH
Confidence            999999999999877421 1 1  237899999999842  22222222 22322   34899999995 4688999999


Q ss_pred             HHhcCcEEEEcCCCcHHHHHHHHHHHHhccc
Q 007207          478 AMISRGYYGAAYDLDSIEIQMQKLFTRGFSS  508 (613)
Q Consensus       478 A~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p  508 (613)
                      |..+++.|....+.++|...+.++.+++|..
T Consensus       154 A~~~~~~f~~~~~~~~l~~~~~~~~~~~C~~  184 (185)
T cd01474         154 ADSKEYVFPVTSGFQALSGIIESVVKKACIE  184 (185)
T ss_pred             hCCCCeeEecCccHHHHHHHHHHHHHhhccC
Confidence            9987654445667889999999998888763

ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.

>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)

Probab=99.80  E-value=2.5e-18  Score=164.19  Aligned_cols=156  Identities=24%  Similarity=0.333  Sum_probs=117.1

Q ss_pred             EEEEEeCCCCCCCC-cHHHHHHHHHHHHHh-CCCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207          329 VIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINFIAGGST  405 (613)
Q Consensus       329 vvfviD~SgSM~g~-~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT  405 (613)
                      ++||||+||||.+. +++.+|.++..++.. +.++++++|+.|+++ .....+.+.  +...+.   ..+. .+..+|+|
T Consensus         3 v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~--~~~~~~---~~l~-~l~~~G~T   76 (178)
T cd01451           3 VIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTR--SVELAK---RRLA-RLPTGGGT   76 (178)
T ss_pred             EEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCC--CHHHHH---HHHH-hCCCCCCC
Confidence            78999999999976 999999999999864 567999999999875 555555433  444443   4454 56779999


Q ss_pred             chHHHHHHHHHHH-hc--CCCCccEEEEEecCCcCchhH----HHHHHHHHHHcCCCCCceEEEEEecCC-CCHHHHHHH
Q 007207          406 NICAPLTKAVEML-TN--SRGSIPIIFLVTDGAVEDERQ----ICDAMKSRLTNGGSICPRIYTFGIGSY-CNHYFLRML  477 (613)
Q Consensus       406 ~l~~aL~~A~~~l-~~--~~~~~~~IillTDG~~~~~~~----~~~~~~~~~~~~~~~~~~i~tigiG~~-~~~~~L~~l  477 (613)
                      ++..+|..|++.+ ..  ..+..+.|||+|||..+....    ....+.+.+.   ..++.+++|++|.+ .+..+|+.|
T Consensus        77 ~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~---~~gi~v~~I~~~~~~~~~~~l~~i  153 (178)
T cd01451          77 PLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLR---ARGISALVIDTEGRPVRRGLAKDL  153 (178)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHH---hcCCcEEEEeCCCCccCccHHHHH
Confidence            9999999999988 22  123357999999999864221    2122333333   23478999999864 578899999


Q ss_pred             HHhcCcEEEEcCCCcH
Q 007207          478 AMISRGYYGAAYDLDS  493 (613)
Q Consensus       478 A~~~gG~~~~v~~~~~  493 (613)
                      |+.+||.|+++.+.+.
T Consensus       154 A~~tgG~~~~~~d~~~  169 (178)
T cd01451         154 ARALGGQYVRLPDLSA  169 (178)
T ss_pred             HHHcCCeEEEcCcCCH
Confidence            9999999999988764

In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins

Probab=99.78  E-value=7.3e-18  Score=158.78  Aligned_cols=153  Identities=20%  Similarity=0.263  Sum_probs=120.9

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      .|++||||.||||.+.+++.+|+++..++..|.   .+++++|+.|++++....++....+.+.+.++++.+.   ..+|
T Consensus         1 ~Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~g   77 (164)
T cd01472           1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLR---YIGG   77 (164)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCCHHHHHHHHHhCc---CCCC
Confidence            479999999999999899999999999998885   4679999999999988877765456666666666443   2378


Q ss_pred             CcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHH
Q 007207          404 STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA  478 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA  478 (613)
                      +|+++.||..|.+.+..     .++..+.|||+|||.+++..  ..... .+++   .++++|+||+|.. +...|+.||
T Consensus        78 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~--~~~~~-~l~~---~gv~i~~ig~g~~-~~~~L~~ia  150 (164)
T cd01472          78 GTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV--EEPAV-ELKQ---AGIEVFAVGVKNA-DEEELKQIA  150 (164)
T ss_pred             CchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH--HHHHH-HHHH---CCCEEEEEECCcC-CHHHHHHHH
Confidence            89999999999998875     23557789999999876543  22222 2222   3589999999987 999999999


Q ss_pred             HhcCcEEEEcC
Q 007207          479 MISRGYYGAAY  489 (613)
Q Consensus       479 ~~~gG~~~~v~  489 (613)
                      ..++|.|.+..
T Consensus       151 ~~~~~~~~~~~  161 (164)
T cd01472         151 SDPKELYVFNV  161 (164)
T ss_pred             CCCchheEEec
Confidence            99998777643

This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.

>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.78  E-value=3.4e-18  Score=162.97  Aligned_cols=143  Identities=22%  Similarity=0.340  Sum_probs=109.8

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC------CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~------~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      ..+++||||+||||.+.+++.+|+++..+++.+.+      +++++|+.|+++++...+++..   .+     ..+. .+
T Consensus         3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~~---~~-----~~~~-~l   73 (176)
T cd01464           3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPL---ES-----FQPP-RL   73 (176)
T ss_pred             CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCccH---Hh-----cCCC-cc
Confidence            45799999999999999999999999999988864      4689999999999887776431   11     1122 56


Q ss_pred             CCCCCcchHHHHHHHHHHHhcCC---------CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207          400 IAGGSTNICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN  470 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~~---------~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~  470 (613)
                      .++|||+++.||..|++.+....         ...+.|||+|||.+++......   +.+++....+++|++||+|.+.|
T Consensus        74 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~---~~~~~~~~~~~~i~~igiG~~~~  150 (176)
T cd01464          74 TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAI---ERIKEARDSKGRIVACAVGPKAD  150 (176)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHH---HHHHhhcccCCcEEEEEeccccC
Confidence            78899999999999999985421         2246899999999876543221   22222233358999999999999


Q ss_pred             HHHHHHHHHh
Q 007207          471 HYFLRMLAMI  480 (613)
Q Consensus       471 ~~~L~~lA~~  480 (613)
                      ..+|+.||..
T Consensus       151 ~~~L~~ia~~  160 (176)
T cd01464         151 LDTLKQITEG  160 (176)
T ss_pred             HHHHHHHHCC
Confidence            9999999863

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein

Probab=99.78  E-value=1.2e-17  Score=174.43  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             ccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEE---EEeecccccc
Q 007207           83 LIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHT---QLIALGENDG  159 (613)
Q Consensus        83 ~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g---~v~ek~~A~~  159 (613)
                      .+-|.+..|+|+|.+  .+|+|+++|+|+|   ++++++||.|.||||++|+|++|+|.++|++..+   +++||++||+
T Consensus       413 aV~L~Sh~VtVeIeg--~iA~TEIEqTF~N---PN~r~LEGElsFPLPEgAtVTGyALdvdGkL~Daw~~VVVEKEKARQ  487 (952)
T TIGR02921       413 KVLIANMAITVEEHG--DNADIEIVETLEN---QTPENHEVFFHFSLPEEAAITGLWLGDDAKDDDKFAFALAPRGAAQK  487 (952)
T ss_pred             ceeEeeeeEEEEEEC--CeEEEEEEEEEEC---CCCCceeEEEEecCCCCCeeeeeeecCCccccccccceeccHHHHHH
Confidence            344555666666666  8899999999999   7999999999999999999999999999999988   9999999995


Q ss_pred             --ccccccc--ccCCcc---cCCeeEEecCCCCCC
Q 007207          160 --AGKSASV--ETGSFL---KPNIFTLTLPQIDGG  187 (613)
Q Consensus       160 --~~~~~~~--~~~~ll---~~n~F~~~V~ni~p~  187 (613)
                        +.+++++  .|++|+   .+|.|.+||+||||.
T Consensus       488 VYEdevRQGrpiDPALLEK~~gN~FriRVYPIPPr  522 (952)
T TIGR02921       488 VYNDEVQQERPIDPALLEQVGPRHYRLRAFPIPPR  522 (952)
T ss_pred             HHHHHHHhcCCCCchhheeccCCeeeEEEccCCcc
Confidence              4456666  699998   589999999999994

Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).

>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell

Probab=99.77  E-value=1.1e-17  Score=160.99  Aligned_cols=169  Identities=17%  Similarity=0.158  Sum_probs=126.2

Q ss_pred             ceEEEEEeCCCCCCCCc-HHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhhcCC
Q 007207          327 KDVIFIVDISGSMQGKP-LEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGINFI  400 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~-~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~~~  400 (613)
                      .||+||||.||||.+.. ++.+|+++..+++.+.   ++.+++|+.|++.+....++...  .+...+..+++.+.....
T Consensus         1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~   80 (186)
T cd01471           1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLSLYY   80 (186)
T ss_pred             CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHhCcC
Confidence            37999999999999887 9999999999999875   46799999999999887765442  234444446665543446


Q ss_pred             CCCCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          401 AGGSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       401 ~~GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      .+|+|++..||..|.+.+..    +++..+.|||+|||.+++........++ +++   .++.+++||+|.+.|..+|+.
T Consensus        81 ~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~-l~~---~gv~v~~igiG~~~d~~~l~~  156 (186)
T cd01471          81 PNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARK-LRE---RGVIIAVLGVGQGVNHEENRS  156 (186)
T ss_pred             CCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHH-HHH---CCCEEEEEEeehhhCHHHHHH
Confidence            78999999999999998865    2344578999999998766544444433 322   348899999999999999999


Q ss_pred             HHHhc--C--cEEEEcCCCcHHHHHHH
Q 007207          477 LAMIS--R--GYYGAAYDLDSIEIQMQ  499 (613)
Q Consensus       477 lA~~~--g--G~~~~v~~~~~l~~~l~  499 (613)
                      ||...  .  ...+...+.+++...++
T Consensus       157 ia~~~~~~~~~~~~~~~~~~~~~~~~~  183 (186)
T cd01471         157 LVGCDPDDSPCPLYLQSSWSEVQNVIK  183 (186)
T ss_pred             hcCCCCCCCCCCeeecCCHHHHHHHhh
Confidence            99865  1  23444455666665544

In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.

>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain

Probab=99.77  E-value=1.7e-17  Score=171.51  Aligned_cols=176  Identities=20%  Similarity=0.227  Sum_probs=136.2

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc-----
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN-----  398 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~-----  398 (613)
                      .|.+++||||+||||.+ ++..+++++..+++. ++++++++|+.|++++..+.+++.  +...+.++++.+...     
T Consensus        52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~~~~~t~--~~~~l~~~l~~l~~~~~~~~  128 (296)
T TIGR03436        52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRLLQDFTS--DPRLLEAALNRLKPPLRTDY  128 (296)
T ss_pred             CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeEeecCCC--CHHHHHHHHHhccCCCcccc
Confidence            47899999999999986 699999999999987 788999999999999888777654  677777777765410     


Q ss_pred             ------CCCCCCcchHHHHHHHH-HHHhcCCC---CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 007207          399 ------FIAGGSTNICAPLTKAV-EMLTNSRG---SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY  468 (613)
Q Consensus       399 ------~~~~GgT~l~~aL~~A~-~~l~~~~~---~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~  468 (613)
                            ..++|+|+++.||..|. +++....+   ..+.||++|||..+........+.+.+++   .++.||+||+|..
T Consensus       129 ~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~---~~v~vy~I~~~~~  205 (296)
T TIGR03436       129 NSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQR---ADVAIYSIDARGL  205 (296)
T ss_pred             ccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHH---cCCEEEEeccCcc
Confidence                  12389999999987665 44433221   35789999999987654444444444433   3489999999842


Q ss_pred             -------------CCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          469 -------------CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       469 -------------~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                                   .+...|+.||+.|||.++++ +.+++...+.++.+.+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~-~~~~l~~~f~~i~~~~~~  256 (296)
T TIGR03436       206 RAPDLGAGAKAGLGGPEALERLAEETGGRAFYV-NSNDLDGAFAQIAEELRS  256 (296)
T ss_pred             ccCCcccccccCCCcHHHHHHHHHHhCCeEecc-cCccHHHHHHHHHHHHhh
Confidence                         25689999999999999998 888999999888887765

Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=99.77  E-value=1.4e-17  Score=165.02  Aligned_cols=172  Identities=19%  Similarity=0.223  Sum_probs=135.3

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      |.|++||||.|+||.+.+++.+|+++..+++.|.   ..++|+|+.|+++++..+++....+...+.++++.+.   ..+
T Consensus         2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~---~~~   78 (224)
T cd01475           2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRME---YLE   78 (224)
T ss_pred             CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHHHhCc---CCC
Confidence            6799999999999999999999999999999885   3679999999999998888876667778888887664   346


Q ss_pred             CCcchHHHHHHHHHHHhc-----CCCC---ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207          403 GSTNICAPLTKAVEMLTN-----SRGS---IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL  474 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~-----~~~~---~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L  474 (613)
                      |+|+++.||..+++.+..     +++.   .+.+||+|||..++.  +... .+.+++   .++.||+||+|. .+...|
T Consensus        79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~--~~~~-a~~lk~---~gv~i~~VgvG~-~~~~~L  151 (224)
T cd01475          79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD--VSEV-AAKARA---LGIEMFAVGVGR-ADEEEL  151 (224)
T ss_pred             CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc--HHHH-HHHHHH---CCcEEEEEeCCc-CCHHHH
Confidence            899999999999876432     1222   578999999997653  2222 223332   348999999998 488999


Q ss_pred             HHHHHhcC-cEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          475 RMLAMISR-GYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       475 ~~lA~~~g-G~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      +.||..++ ++++.+.+.+++.....++...++.
T Consensus       152 ~~ias~~~~~~~f~~~~~~~l~~~~~~l~~~~C~  185 (224)
T cd01475         152 REIASEPLADHVFYVEDFSTIEELTKKFQGKICV  185 (224)
T ss_pred             HHHhCCCcHhcEEEeCCHHHHHHHhhhcccccCc
Confidence            99998765 5778888888888877777777765

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration

Probab=99.76  E-value=2e-17  Score=157.83  Aligned_cols=161  Identities=22%  Similarity=0.283  Sum_probs=125.5

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS  404 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg  404 (613)
                      |++||||.|+||.+..++.+|+.+..+++.+..   +.||+|+.|++++....++....+...+.++++.+.   ..+|+
T Consensus         2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~---~~~g~   78 (177)
T cd01469           2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHIS---QLLGL   78 (177)
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHHHHhCc---cCCCC
Confidence            799999999999988999999999999998864   689999999999988888776666677766666443   35788


Q ss_pred             cchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----HHHHH
Q 007207          405 TNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HYFLR  475 (613)
Q Consensus       405 T~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----~~~L~  475 (613)
                      |+++.||..|.+.+..     +++..+.+||+|||..++.... ..+.+.+++   .++.+|+||+|...+    ...|+
T Consensus        79 T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~-~~~~~~~k~---~gv~v~~Vgvg~~~~~~~~~~~L~  154 (177)
T cd01469          79 TNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLL-KDVIPQAER---EGIIRYAIGVGGHFQRENSREELK  154 (177)
T ss_pred             ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcccc-HHHHHHHHH---CCcEEEEEEecccccccccHHHHH
Confidence            9999999999988632     2345779999999998765433 223333332   358999999998654    68899


Q ss_pred             HHHHhcCc-EEEEcCCCcHHH
Q 007207          476 MLAMISRG-YYGAAYDLDSIE  495 (613)
Q Consensus       476 ~lA~~~gG-~~~~v~~~~~l~  495 (613)
                      .||..+++ +++.+.+.++|.
T Consensus       155 ~ias~p~~~h~f~~~~~~~l~  175 (177)
T cd01469         155 TIASKPPEEHFFNVTDFAALK  175 (177)
T ss_pred             HHhcCCcHHhEEEecCHHHhc
Confidence            99998875 566677766553

Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.

>cd01477 vWA_F09G8-8_type VWA F09G8

Probab=99.76  E-value=2.5e-17  Score=158.49  Aligned_cols=159  Identities=14%  Similarity=0.157  Sum_probs=120.1

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---------CCeEEEEEeCCcceeeeccccccCHHHHHHHHH
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQ  393 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---------~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~  393 (613)
                      ...+.|++||||.|+||...+++.+|+.+..++..+..         ++|++||.|+++++..+++....+...+.++++
T Consensus        16 ~~~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~   95 (193)
T cd01477          16 KNLWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQ   95 (193)
T ss_pred             ccceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHH
Confidence            44679999999999999988999999999988776542         479999999999999998876556677777666


Q ss_pred             HHhhcCCCCCCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCch-hHHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207          394 WIGINFIAGGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDE-RQICDAMKSRLTNGGSICPRIYTFGIGS  467 (613)
Q Consensus       394 ~i~~~~~~~GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~-~~~~~~~~~~~~~~~~~~~~i~tigiG~  467 (613)
                      ........+|||+++.||..|.+.+...     ++..+++||||||..+.. ..... +.+.+++   .++.||+||+|.
T Consensus        96 ~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~-~a~~l~~---~GI~i~tVGiG~  171 (193)
T cd01477          96 GSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRP-IAARLKS---TGIAIITVAFTQ  171 (193)
T ss_pred             HHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHH-HHHHHHH---CCCEEEEEEeCC
Confidence            4211344678999999999999998642     234678999999865432 22222 2333333   359999999999


Q ss_pred             CCCHHHHHHHHHhcCcEE
Q 007207          468 YCNHYFLRMLAMISRGYY  485 (613)
Q Consensus       468 ~~~~~~L~~lA~~~gG~~  485 (613)
                      +.|...+++|++...+.|
T Consensus       172 ~~d~~~~~~L~~ias~~~  189 (193)
T cd01477         172 DESSNLLDKLGKIASPGM  189 (193)
T ss_pred             CCCHHHHHHHHHhcCCCC
Confidence            988888888887665443

8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo

>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology

Probab=99.74  E-value=1.6e-16  Score=153.15  Aligned_cols=175  Identities=15%  Similarity=0.131  Sum_probs=129.8

Q ss_pred             eEEEEEeCCCCCCCCcHH-HHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhhcCCC
Q 007207          328 DVIFIVDISGSMQGKPLE-DTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~-~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~~~~  401 (613)
                      |++|+||.|+||....+. .++..++.+++.+.   .+.||+|+.|++.++...++...  .+.+.+.++++.+......
T Consensus         2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~   81 (192)
T cd01473           2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKNSYRS   81 (192)
T ss_pred             cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHhccCC
Confidence            799999999999877777 47899999998876   36899999999999887776542  3556677777766533345


Q ss_pred             CCCcchHHHHHHHHHHHhcCC----CCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          402 GGSTNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      +|+|+++.||+.|.+.+....    +..+.+||||||..++.. .......+.+++   .++.+|+||+|.. +...|+.
T Consensus        82 ~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~---~gV~i~~vGiG~~-~~~el~~  157 (192)
T cd01473          82 GGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKE---ENVKLLVVGVGAA-SENKLKL  157 (192)
T ss_pred             CCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHH---CCCEEEEEEeccc-cHHHHHH
Confidence            899999999999999885432    236789999999987532 122222333333   3599999999985 7788999


Q ss_pred             HHHhc--C--cEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          477 LAMIS--R--GYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       477 lA~~~--g--G~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      ||...  .  ..+++..+.++|......+.+++|
T Consensus       158 ia~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~iC  191 (192)
T cd01473         158 LAGCDINNDNCPNVIKTEWNNLNGISKFLTDKIC  191 (192)
T ss_pred             hcCCCCCCCCCCeEEecchhhHHHHHHHHHhhcc
Confidence            99762  2  224444458888888888877766

CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional

Probab=99.74  E-value=1.6e-16  Score=170.84  Aligned_cols=184  Identities=19%  Similarity=0.230  Sum_probs=142.0

Q ss_pred             CCceEEEEEeCCCCCCCCcH-HHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207          325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN  398 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~-~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~  398 (613)
                      ...+++||||.|+||.-..+ +.+|.++..++..+..   ..+++++.|++.++.++++....  +...+..++..+...
T Consensus        41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~~  120 (576)
T PTZ00441         41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRKT  120 (576)
T ss_pred             CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHhh
Confidence            57899999999999975444 7899999999988853   34566699999998877765432  444566666655545


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR  475 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~  475 (613)
                      ...+|+|++..||..+.+.+...   .+..+.|||||||..++.......++ .++.   .++.|++||||.+.+..+|+
T Consensus       121 ~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq-~LR~---~GVeI~vIGVG~g~n~e~Lr  196 (576)
T PTZ00441        121 YLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESR-KLKD---RNVKLAVIGIGQGINHQFNR  196 (576)
T ss_pred             ccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHH-HHHH---CCCEEEEEEeCCCcCHHHHH
Confidence            66789999999999999988643   34467999999999865444444333 3333   34899999999999999999


Q ss_pred             HHHH----hcCcEEEEcCCCcHHHHHHHHHHHHhccceeee
Q 007207          476 MLAM----ISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLAN  512 (613)
Q Consensus       476 ~lA~----~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~  512 (613)
                      .||.    .++|.|+...+.+++...+..+++++|..+-++
T Consensus       197 lIAgC~p~~g~c~~Y~vadf~eL~~ivk~LikkVC~eve~~  237 (576)
T PTZ00441        197 LLAGCRPREGKCKFYSDADWEEAKNLIKPFIAKVCTEVERT  237 (576)
T ss_pred             HHhccCCCCCCCceEEeCCHHHHHHHHHHHHHHhccccccc
Confidence            9993    466788888999999999999999999877443

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=99.72  E-value=2.9e-16  Score=147.88  Aligned_cols=152  Identities=20%  Similarity=0.244  Sum_probs=115.1

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS  404 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg  404 (613)
                      |++||+|.|+||.+..++.+|+++..+++.+.   ++++|+|+.|++++....++....+.+.+.++++.+   ...+|+
T Consensus         2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~~~~~l~~~l~~~---~~~~g~   78 (164)
T cd01482           2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNL---PYKGGN   78 (164)
T ss_pred             CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCCCHHHHHHHHHhC---cCCCCC
Confidence            79999999999998899999999999998774   578999999999998877765545555555555533   246899


Q ss_pred             cchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207          405 TNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM  479 (613)
Q Consensus       405 T~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~  479 (613)
                      |+++.||..+.+.+..     +++..+.||++|||.+++..  . .+.+.+++   .++.+|+||+|. .+...|++||.
T Consensus        79 T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~--~-~~a~~lk~---~gi~i~~ig~g~-~~~~~L~~ia~  151 (164)
T cd01482          79 TRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDV--E-LPARVLRN---LGVNVFAVGVKD-ADESELKMIAS  151 (164)
T ss_pred             ChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchH--H-HHHHHHHH---CCCEEEEEecCc-CCHHHHHHHhC
Confidence            9999999999876532     23456789999999986532  1 22233332   358999999997 47889999999


Q ss_pred             hcCcE-EEEcC
Q 007207          480 ISRGY-YGAAY  489 (613)
Q Consensus       480 ~~gG~-~~~v~  489 (613)
                      .+... .+.+.
T Consensus       152 ~~~~~~~~~~~  162 (164)
T cd01482         152 KPSETHVFNVA  162 (164)
T ss_pred             CCchheEEEcC
Confidence            87654 44444

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.70  E-value=4.2e-16  Score=145.47  Aligned_cols=150  Identities=22%  Similarity=0.320  Sum_probs=116.7

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC-C
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG-G  403 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~-G  403 (613)
                      |++||||+||||.+.+++.+++++..++..+.   ++++++|+.|++......+.....+...+.+.++.+.   ... |
T Consensus         2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~   78 (161)
T cd01450           2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLK---YLGGG   78 (161)
T ss_pred             cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCCCHHHHHHHHHhcc---cCCCC
Confidence            79999999999998899999999999998876   3889999999999887776655334555555555432   223 4


Q ss_pred             CcchHHHHHHHHHHHhcCC----CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207          404 STNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM  479 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~  479 (613)
                      +|++..||..+.+.+....    +..+.+||+|||.+++.....+.++. +++   .++++++||+|. .+...|+.||.
T Consensus        79 ~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~-~~~---~~v~v~~i~~g~-~~~~~l~~la~  153 (161)
T cd01450          79 GTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAK-LKD---EGIKVFVVGVGP-ADEEELREIAS  153 (161)
T ss_pred             CccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHH-HHH---CCCEEEEEeccc-cCHHHHHHHhC
Confidence            9999999999999987653    56779999999998775434343333 332   248999999999 79999999999


Q ss_pred             hcCcEE
Q 007207          480 ISRGYY  485 (613)
Q Consensus       480 ~~gG~~  485 (613)
                      .+++.|
T Consensus       154 ~~~~~~  159 (161)
T cd01450         154 CPSERH  159 (161)
T ss_pred             CCCCCc
Confidence            884443

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.70  E-value=7.3e-16  Score=145.12  Aligned_cols=169  Identities=19%  Similarity=0.163  Sum_probs=118.1

Q ss_pred             ceEEEEEeCCCCCC------C---CcHHHHHHHHHHHHH--hCCCCCeEEEEEeCCcceeeecccc----ccCH---HHH
Q 007207          327 KDVIFIVDISGSMQ------G---KPLEDTKNALAVALS--KLDPGDSFNIVAFNGETYLFSTSME----LATK---EAV  388 (613)
Q Consensus       327 ~~vvfviD~SgSM~------g---~~~~~ak~al~~~l~--~L~~~d~~~Ii~F~~~~~~~~~~~~----~~~~---~~~  388 (613)
                      +.+++++|.||||.      |   ++++.+|..+..|.+  .-+.+|+++   |++......+.+.    ..+.   +.+
T Consensus         1 ~~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l   77 (191)
T cd01455           1 KRLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETL   77 (191)
T ss_pred             CceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHH
Confidence            46899999999992      2   478888888777763  334688888   3444332222111    1123   345


Q ss_pred             HHHHHHHhhcCCCCCCcchHHHHHHHHHHHh-cCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEec
Q 007207          389 ERAHQWIGINFIAGGSTNICAPLTKAVEMLT-NSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIG  466 (613)
Q Consensus       389 ~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~-~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG  466 (613)
                      ...++..+ --.++.+|.  .||..|++.+. +.+...+.|||+|||..+... ...+......+   ..+++|||||||
T Consensus        78 ~~~l~~~q-~g~ag~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~---~~gV~iytIgiG  151 (191)
T cd01455          78 KMMHAHSQ-FCWSGDHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAR---EPNVNAFVIFIG  151 (191)
T ss_pred             HHHHHhcc-cCccCccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHH---hCCCEEEEEEec
Confidence            55555443 223455676  99999999997 777778899999999975443 22221122222   235999999999


Q ss_pred             CCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207          467 SYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG  505 (613)
Q Consensus       467 ~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~  505 (613)
                      .. +.+.|+.+|+.+||.||.+.+.++|++.+++++...
T Consensus       152 ~~-d~~~l~~iA~~tgG~~F~A~d~~~L~~iy~~I~~~~  189 (191)
T cd01455         152 SL-SDEADQLQRELPAGKAFVCMDTSELPHIMQQIFTST  189 (191)
T ss_pred             CC-CHHHHHHHHhCCCCcEEEeCCHHHHHHHHHHHHHHh
Confidence            85 778899999999999999999999988888877643

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma

Probab=99.69  E-value=5.5e-16  Score=147.34  Aligned_cols=167  Identities=27%  Similarity=0.346  Sum_probs=127.8

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS  404 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg  404 (613)
                      ||+||||.|+||.+..++.+|+++..+++.+   ..+.+|+++.|++......++....+...+...+  .......+|+
T Consensus         1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~g~   78 (178)
T PF00092_consen    1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAI--NDSIPSSGGG   78 (178)
T ss_dssp             EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHH--HTTGGCCBSS
T ss_pred             CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccccccccccccc--cccccccchh
Confidence            7999999999999889999999999999965   3588999999999999887776655666666666  1224567899


Q ss_pred             cchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207          405 TNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM  479 (613)
Q Consensus       405 T~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~  479 (613)
                      |++..||+.|.+.+...     ++..+.+|++|||.+++..............   .++.+++||+ ...+...|+.||.
T Consensus        79 t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~---~~i~~~~ig~-~~~~~~~l~~la~  154 (178)
T PF00092_consen   79 TNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS---NGIKVIAIGI-DNADNEELRELAS  154 (178)
T ss_dssp             B-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH---CTEEEEEEEE-SCCHHHHHHHHSH
T ss_pred             hhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh---cCcEEEEEec-CcCCHHHHHHHhC
Confidence            99999999999998654     4567899999999998775444444433332   2356666666 3679999999997


Q ss_pred             hc--CcEEEEcCCCcHHHHHHHH
Q 007207          480 IS--RGYYGAAYDLDSIEIQMQK  500 (613)
Q Consensus       480 ~~--gG~~~~v~~~~~l~~~l~~  500 (613)
                      .+  .+.++++.+..++.+..++
T Consensus       155 ~~~~~~~~~~~~~~~~l~~~~~~  177 (178)
T PF00092_consen  155 CPTSEGHVFYLADFSDLSQIIQQ  177 (178)
T ss_dssp             SSTCHHHEEEESSHHHHHHHHHH
T ss_pred             CCCCCCcEEEcCCHHHHHHHHhc
Confidence            64  4778888988888766654

Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....

>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.69  E-value=8.1e-16  Score=142.89  Aligned_cols=145  Identities=23%  Similarity=0.247  Sum_probs=107.5

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST  405 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT  405 (613)
                      ++++|+||+||||.+.++..++.++..++..+. .+++++++.|+++.... +..   ...++.++++++. .+.++|||
T Consensus         1 ~~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~-~~~---~~~~~~~~~~~l~-~~~~~ggT   75 (152)
T cd01462           1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTK-IVD---KTDDLEEPVEFLS-GVQLGGGT   75 (152)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEE-ecC---CcccHHHHHHHHh-cCCCCCCc
Confidence            479999999999999899999999988887766 48899999999983322 221   3445666777775 56789999


Q ss_pred             chHHHHHHHHHHHhcCCCCccEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207          406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI  480 (613)
Q Consensus       406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~  480 (613)
                      ++..||..+++.+.........||++|||.. ....... ......+   ..+++||+||+|++.|..+++..|+.
T Consensus        76 ~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~~~~~~-~~~~~~~---~~~~~v~~~~~g~~~~~~~~~~~~~~  147 (152)
T cd01462          76 DINKALRYALELIERRDPRKADIVLITDGYEGGVSDELL-REVELKR---SRVARFVALALGDHGNPGYDRISAED  147 (152)
T ss_pred             CHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCCHHHH-HHHHHHH---hcCcEEEEEEecCCCCchHHHHhhhh
Confidence            9999999999998765444679999999963 3333332 1222222   22489999999999888766655543

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases

Probab=99.68  E-value=5.4e-16  Score=147.55  Aligned_cols=148  Identities=19%  Similarity=0.307  Sum_probs=104.2

Q ss_pred             eEEEEEeCCCCCCC-CcHHHHHHHHHHHHHhCCC-CCeEEEEEeCCcc--e---eeeccccccCHHHHHHHHHHHhhcCC
Q 007207          328 DVIFIVDISGSMQG-KPLEDTKNALAVALSKLDP-GDSFNIVAFNGET--Y---LFSTSMELATKEAVERAHQWIGINFI  400 (613)
Q Consensus       328 ~vvfviD~SgSM~g-~~~~~ak~al~~~l~~L~~-~d~~~Ii~F~~~~--~---~~~~~~~~~~~~~~~~a~~~i~~~~~  400 (613)
                      .++||||+||||.+ .+++.+|+++..++..+.. +++|+|+.|++.+  .   .+... ...+......+.+.+. .+.
T Consensus         2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~   79 (174)
T cd01454           2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKI-KDFDESLHERARKRLA-ALS   79 (174)
T ss_pred             EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEe-cCcccccchhHHHHHH-ccC
Confidence            47899999999998 5999999999999888875 9999999999873  2   12111 1122221123444554 567


Q ss_pred             CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhH------HHHHHHHHHHcCCCCCceEEEEEecCCCC---H
Q 007207          401 AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQ------ICDAMKSRLTNGGSICPRIYTFGIGSYCN---H  471 (613)
Q Consensus       401 ~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~------~~~~~~~~~~~~~~~~~~i~tigiG~~~~---~  471 (613)
                      ++|+|+++.||..+.+.+...+...+.||++|||.+++...      ......+...+....++++|+||+|++..   .
T Consensus        80 ~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~~~~  159 (174)
T cd01454          80 PGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATTVDK  159 (174)
T ss_pred             CCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccccchH
Confidence            78899999999999999987666778999999999875321      12222111222223469999999999876   4


Q ss_pred             HHHHHH
Q 007207          472 YFLRML  477 (613)
Q Consensus       472 ~~L~~l  477 (613)
                      +.++.|
T Consensus       160 ~~~~~~  165 (174)
T cd01454         160 EYLKNI  165 (174)
T ss_pred             HHHHHh
Confidence            455544

Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=99.67  E-value=1.5e-15  Score=168.17  Aligned_cols=161  Identities=24%  Similarity=0.287  Sum_probs=124.5

Q ss_pred             CCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          322 RKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       322 ~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      ....+..++||||+||||.+.+|..+|.++..++.. +.+.|+|+||.|+++ ++...+.+.     ++..+..+|. .+
T Consensus       397 ~~~~~~~vvfvvD~SGSM~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~-----~~~~~~~~L~-~l  470 (584)
T PRK13406        397 KQRSETTTIFVVDASGSAALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTR-----SLVRAKRSLA-GL  470 (584)
T ss_pred             hccCCccEEEEEECCCCCcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCc-----CHHHHHHHHh-cC
Confidence            345678999999999999999999999999999865 678999999999765 777666543     4445566676 78


Q ss_pred             CCCCCcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchh----------HHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207          400 IAGGSTNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDER----------QICDAMKSRLTNGGSICPRIYTFGIGS  467 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~----------~~~~~~~~~~~~~~~~~~~i~tigiG~  467 (613)
                      ..+|||+|+.||..|++.+...  ++..+.|||||||..+...          .-...+...+   ...++++++|++|.
T Consensus       471 ~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~---~~~gi~~~vId~g~  547 (584)
T PRK13406        471 PGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARAL---RAAGLPALVIDTSP  547 (584)
T ss_pred             CCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHH---HhcCCeEEEEecCC
Confidence            8999999999999999987643  3446899999999986421          1111122222   23458899999997


Q ss_pred             CCCHHHHHHHHHhcCcEEEEcCCCc
Q 007207          468 YCNHYFLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       468 ~~~~~~L~~lA~~~gG~~~~v~~~~  492 (613)
                      .. ..+++.||+.+||.|+.+.+.+
T Consensus       548 ~~-~~~~~~LA~~~gg~y~~l~~~~  571 (584)
T PRK13406        548 RP-QPQARALAEAMGARYLPLPRAD  571 (584)
T ss_pred             CC-cHHHHHHHHhcCCeEEECCCCC
Confidence            63 4579999999999999998764

>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions

Probab=99.67  E-value=2e-15  Score=141.94  Aligned_cols=148  Identities=18%  Similarity=0.277  Sum_probs=109.5

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCC--cceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNG--ETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~--~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      |++|++|.|+||.+ .++..++.+..++..+..   .++++++.|++  ......++....+...+.++++.+.   ..+
T Consensus         2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~---~~g   77 (163)
T cd01476           2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLR---FIG   77 (163)
T ss_pred             CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCc---cCC
Confidence            79999999999986 688889999999988764   89999999999  5555555544445556666665332   347


Q ss_pred             CCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC--CCHHHHHH
Q 007207          403 GSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY--CNHYFLRM  476 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~--~~~~~L~~  476 (613)
                      |+|+++.||..|.+.+..    +++..+.+|++|||..++...  . ..+.+++  ..++.+|+||+|+.  .|...|+.
T Consensus        78 g~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~--~-~~~~l~~--~~~v~v~~vg~g~~~~~~~~~L~~  152 (163)
T cd01476          78 GTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPE--K-QARILRA--VPNIETFAVGTGDPGTVDTEELHS  152 (163)
T ss_pred             CCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchH--H-HHHHHhh--cCCCEEEEEECCCccccCHHHHHH
Confidence            889999999999999852    223457899999998865421  1 1222322  24589999999998  88899999


Q ss_pred             HHHhcCcE
Q 007207          477 LAMISRGY  484 (613)
Q Consensus       477 lA~~~gG~  484 (613)
                      ||......
T Consensus       153 ia~~~~~~  160 (163)
T cd01476         153 ITGNEDHI  160 (163)
T ss_pred             HhCCCccc
Confidence            98765543

Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.

>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]

Probab=99.64  E-value=4.4e-15  Score=143.60  Aligned_cols=166  Identities=20%  Similarity=0.238  Sum_probs=126.0

Q ss_pred             CCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHh-CCCCCeEEEEEeC-CcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          323 KVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFN-GETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~-L~~~d~~~Ii~F~-~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      .....-|+||+|.||||... +|..+|-++..+|.. ....|++++|.|. ++++++.+.+.     ++..+.++|. .+
T Consensus        75 ~r~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~-----sv~~~~~~L~-~l  148 (261)
T COG1240          75 GRAGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTS-----SVELAERALE-RL  148 (261)
T ss_pred             cCcCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcc-----cHHHHHHHHH-hC
Confidence            44567899999999999987 899999999998854 5679999999999 56788777654     3455666676 78


Q ss_pred             CCCCCcchHHHHHHHHHHHhcCC----CCccEEEEEecCCcCchh--HHHHHHHHHHHcCCCCCceEEEEEecC-CCCHH
Q 007207          400 IAGGSTNICAPLTKAVEMLTNSR----GSIPIIFLVTDGAVEDER--QICDAMKSRLTNGGSICPRIYTFGIGS-YCNHY  472 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~~~~~--~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~  472 (613)
                      .++|+|+|..||..|++.+....    ...+.+|+||||..+...  .+..............++.+.+|.+.. .....
T Consensus       149 ~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g  228 (261)
T COG1240         149 PTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLG  228 (261)
T ss_pred             CCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCcccccc
Confidence            99999999999999999987543    467799999999986432  222333333323333456677777643 34557


Q ss_pred             HHHHHHHhcCcEEEEcCCCcHH
Q 007207          473 FLRMLAMISRGYYGAAYDLDSI  494 (613)
Q Consensus       473 ~L~~lA~~~gG~~~~v~~~~~l  494 (613)
                      +.+.||...||.|+++.+..+.
T Consensus       229 ~~~~iA~~~Gg~~~~L~~l~~~  250 (261)
T COG1240         229 LAEEIARASGGEYYHLDDLSDD  250 (261)
T ss_pred             HHHHHHHHhCCeEEecccccch
Confidence            8999999999999999987654

>smart00327 VWA von Willebrand factor (vWF) type A domain

Probab=99.62  E-value=3.5e-14  Score=134.45  Aligned_cols=156  Identities=28%  Similarity=0.403  Sum_probs=121.1

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      |.+++||+|.|+||.+.+++.++.++..++..+..   +++++|+.|++....+.+.....+...+...++.+..  ...
T Consensus         1 ~~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~   78 (177)
T smart00327        1 PLDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEALASLSY--KLG   78 (177)
T ss_pred             CccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEcccccCCHHHHHHHHHhcCC--CCC
Confidence            47899999999999988999999999999998876   8999999999988777665323355555555553320  158


Q ss_pred             CCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          403 GSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      |+|++..+|..+.+.+...     .+..+.|+++|||.+++.......+....+    .++.++.||+|...+...|+.|
T Consensus        79 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~----~~i~i~~i~~~~~~~~~~l~~~  154 (177)
T smart00327       79 GGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR----SGVKVFVVGVGNDVDEEELKKL  154 (177)
T ss_pred             CCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH----CCCEEEEEEccCccCHHHHHHH
Confidence            9999999999999987521     122568999999998865344444444322    2389999999987799999999


Q ss_pred             HHhcCcEEEE
Q 007207          478 AMISRGYYGA  487 (613)
Q Consensus       478 A~~~gG~~~~  487 (613)
                      +..++|.|.+
T Consensus       155 ~~~~~~~~~~  164 (177)
T smart00327      155 ASAPGGVYVF  164 (177)
T ss_pred             hCCCcceEEe
Confidence            9999999876

VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=99.60  E-value=4.9e-14  Score=132.60  Aligned_cols=153  Identities=18%  Similarity=0.184  Sum_probs=115.1

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      +|++|+||.|+||....++.+|+.+..+++.+.   ...+|+++.|+++++..+++....+.+.+.++++.+.  ...++
T Consensus         1 ~DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i~--~~~g~   78 (165)
T cd01481           1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLR--LRGGS   78 (165)
T ss_pred             CCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHHHHHHHHhcc--cCCCC
Confidence            489999999999988899999999999999886   3679999999999988877766667777777777553  12233


Q ss_pred             CcchHHHHHHHHHHHhcC-------CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          404 STNICAPLTKAVEMLTNS-------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~-------~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      +|+++.||..+.+.+...       ++.++.+|++|||..++.-  .. ..+.+++   .++.+|+||+|. .|...|+.
T Consensus        79 ~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~--~~-~a~~lr~---~gv~i~~vG~~~-~~~~eL~~  151 (165)
T cd01481          79 QLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDV--ER-PAVALKR---AGIVPFAIGARN-ADLAELQQ  151 (165)
T ss_pred             cccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchH--HH-HHHHHHH---CCcEEEEEeCCc-CCHHHHHH
Confidence            689999999998765332       1235689999999987532  22 2233333   348899999984 68999999


Q ss_pred             HHHhcCcEEEEcC
Q 007207          477 LAMISRGYYGAAY  489 (613)
Q Consensus       477 lA~~~gG~~~~v~  489 (613)
                      ||.... ..+.+.
T Consensus       152 ias~p~-~vf~v~  163 (165)
T cd01481         152 IAFDPS-FVFQVS  163 (165)
T ss_pred             HhCCCc-cEEEec
Confidence            998774 344333

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.60  E-value=4.6e-14  Score=130.54  Aligned_cols=150  Identities=30%  Similarity=0.449  Sum_probs=119.4

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      .+++|+||.|+||...+++.+++++..++..+..   .++++++.|++....+.+.....+.+.+.+.++.+. . ..+|
T Consensus         1 ~~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~   78 (161)
T cd00198           1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALK-K-GLGG   78 (161)
T ss_pred             CcEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhcc-c-CCCC
Confidence            3689999999999777999999999999999886   899999999998887777655556677777777664 1 4789


Q ss_pred             CcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhc
Q 007207          404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMIS  481 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~  481 (613)
                      +|++..|+..+.+.+...  ....+.+|++|||..++.........+.+++   .+++++.||+|...+...|+.|+..+
T Consensus        79 ~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~---~~v~v~~v~~g~~~~~~~l~~l~~~~  155 (161)
T cd00198          79 GTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRK---LGITVYTIGIGDDANEDELKEIADKT  155 (161)
T ss_pred             CccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHH---cCCEEEEEEcCCCCCHHHHHHHhccc
Confidence            999999999999998753  4567899999999987654222222233322   25899999999977899999999887

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.59  E-value=2.7e-14  Score=159.75  Aligned_cols=161  Identities=22%  Similarity=0.282  Sum_probs=120.0

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCcc-eeeeccccccCHHHHHHHHHHHhhcCC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGINFI  400 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~~~~  400 (613)
                      ......++||||+||||.+.+|..+|.++..++.. +...|+|+||.|++.. ..+.+.+.  +...   +.+.|. .+.
T Consensus       404 ~~~~~~v~fvvD~SGSM~~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~--~~~~---~~~~L~-~l~  477 (589)
T TIGR02031       404 RKSGRLLIFVVDASGSAAVARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSR--SVEQ---AKRRLD-VLP  477 (589)
T ss_pred             cccCceEEEEEECCCCCChHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCC--CHHH---HHHHHh-cCC
Confidence            34567799999999999999999999999999875 4578999999998764 55555433  3333   445555 677


Q ss_pred             CCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchh------------HHHHH---HHHHHHcCCCCCceEEEE
Q 007207          401 AGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDER------------QICDA---MKSRLTNGGSICPRIYTF  463 (613)
Q Consensus       401 ~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~------------~~~~~---~~~~~~~~~~~~~~i~ti  463 (613)
                      ++|+|+++.||..|++.+....  ...+.|||+|||..+...            ...+.   +.+.+.   ..++.+++|
T Consensus       478 ~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~gi~~~vi  554 (589)
T TIGR02031       478 GGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIR---EAGMPALVI  554 (589)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHH---hcCCeEEEE
Confidence            8999999999999999986432  345689999999986311            11112   222232   334789999


Q ss_pred             EecCCC-CHHHHHHHHHhcCcEEEEcCCCc
Q 007207          464 GIGSYC-NHYFLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       464 giG~~~-~~~~L~~lA~~~gG~~~~v~~~~  492 (613)
                      ++|... +..+++.||+.++|.|+++.+.+
T Consensus       555 d~~~~~~~~~~~~~lA~~~~g~y~~l~~~~  584 (589)
T TIGR02031       555 DTAMRFVSTGFAQKLARKMGAHYIYLPNAT  584 (589)
T ss_pred             eCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence            998763 45689999999999999998765

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]

Probab=99.59  E-value=3.9e-14  Score=129.36  Aligned_cols=142  Identities=25%  Similarity=0.390  Sum_probs=108.1

Q ss_pred             eEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC------CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDP------GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       328 ~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~------~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      -++|++|+||||.|++|+..+..+..+++.|..      ...++||+|++.++...|++.         +.++--..+.+
T Consensus         5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~---------~~nF~~p~L~a   75 (207)
T COG4245           5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTD---------AANFNPPILTA   75 (207)
T ss_pred             CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhh---------HhhcCCCceec
Confidence            489999999999999999999999999998863      456999999999988887643         22332245778


Q ss_pred             CCCcchHHHHHHHHHHHhcC---------CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC-CCH
Q 007207          402 GGSTNICAPLTKAVEMLTNS---------RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-CNH  471 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~---------~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~-~~~  471 (613)
                      .|||.+++||+.|.+++...         ...++.++|+|||+++|...........   ..+...++..+++|.. +|.
T Consensus        76 ~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~---~~~~~k~v~a~~~G~~~ad~  152 (207)
T COG4245          76 QGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQ---GERRAKSVAAFSVGVQGADN  152 (207)
T ss_pred             CCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhh---cccccceEEEEEeccccccc
Confidence            89999999999999998653         2347899999999997765433222222   1222246777888866 788


Q ss_pred             HHHHHHHHhc
Q 007207          472 YFLRMLAMIS  481 (613)
Q Consensus       472 ~~L~~lA~~~  481 (613)
                      ..|+++++.-
T Consensus       153 ~~L~qit~~V  162 (207)
T COG4245         153 KTLNQITEKV  162 (207)
T ss_pred             HHHHHHHHhh
Confidence            8999998653

>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain

Probab=99.58  E-value=1.3e-14  Score=115.56  Aligned_cols=69  Identities=22%  Similarity=0.283  Sum_probs=64.3

Q ss_pred             cccccccceEEEEEEEEeeeEEEEEEEEEEecccCCCceeeEEEEeecCCCceEEEEEEEECCEEEEEEEeecc
Q 007207           82 SLIPLQMNAVELDVDCYLDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALG  155 (613)
Q Consensus        82 ~~~pL~~~~v~v~v~~~~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a~V~~f~~~i~~r~i~g~v~ek~  155 (613)
                      ..+||+..+|+..|.|  ..|.+|++++|+|   ++++++||.|+|||+|+++|+||++.|+||+++++|++|.
T Consensus        10 ~~LpL~~~~v~a~v~G--~~~~~ta~lty~N---~~~~plEg~f~fPL~e~~~V~gfea~i~gr~v~~~v~~rt   78 (78)
T PF13757_consen   10 NPLPLQSSRVTACVNG--YSAGTTASLTYEN---PEDRPLEGVFVFPLDEGATVVGFEADIGGRIVTVQVQDRT   78 (78)
T ss_pred             CcceEEEeEEEEEEEc--ccccEEEEEEEEC---CCCCcEEEEEEEecCCCcEEEEEEEEeCCcEEEEEeeecC
Confidence            4589999999999999  5599999999999   7999999999999999999999999999999999999873

>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.52  E-value=1.6e-13  Score=158.64  Aligned_cols=186  Identities=24%  Similarity=0.323  Sum_probs=158.9

Q ss_pred             CCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeec----cccccCHHHHHHHHHHHh
Q 007207          321 SRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFST----SMELATKEAVERAHQWIG  396 (613)
Q Consensus       321 ~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~----~~~~~~~~~~~~a~~~i~  396 (613)
                      .....|++++|++|.||||.|.++..+|..+..+|+.|.++|.|++++|++++....+    ...+++..+++...+.++
T Consensus       220 ~aAt~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~  299 (1104)
T KOG2353|consen  220 QAATSPKDIVILLDVSGSMSGLRLDLAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIE  299 (1104)
T ss_pred             cccCCccceEEEEeccccccchhhHHHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHh
Confidence            4467899999999999999999999999999999999999999999999999876553    334678899999999997


Q ss_pred             hcCCCCCCcchHHHHHHHHHHHhcCC---------CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207          397 INFIAGGSTNICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS  467 (613)
Q Consensus       397 ~~~~~~GgT~l~~aL~~A~~~l~~~~---------~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~  467 (613)
                       .+.+.|-++...|+..|+++|....         .....|+++|||.+++..++++...     .....+|+||+-+|.
T Consensus       300 -~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn-----~~~~~Vrvftflig~  373 (1104)
T KOG2353|consen  300 -TLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDENAKEIFEKYN-----WPDKKVRVFTFLIGD  373 (1104)
T ss_pred             -hhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCcccHHHHHHhhc-----cCCCceEEEEEEecc
Confidence             6779999999999999999997532         1356899999999988887776543     234569999999996


Q ss_pred             CC-CHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeee
Q 007207          468 YC-NHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLAN  512 (613)
Q Consensus       468 ~~-~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~  512 (613)
                      .. +...++.||..+.|.|+++.+.+++.......+.-++.|.+..
T Consensus       374 ~~~~~~~~~wmac~n~gyy~~I~~~~~v~~~~~~y~~vlsRp~vl~  419 (1104)
T KOG2353|consen  374 EVYDLDEIQWMACANKGYYVHIISIADVRENVLEYLDVLSRPLVLQ  419 (1104)
T ss_pred             cccccccchhhhhhCCCceEeccchhhcChHhhhhhhhhccceeec
Confidence            53 4456999999999999999999999999998888888888655

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.51  E-value=4e-13  Score=152.02  Aligned_cols=157  Identities=24%  Similarity=0.306  Sum_probs=115.8

Q ss_pred             CCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHh-CCCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          323 KVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSK-LDPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      ......++||||.||||.+. ++..+|.++..++.. +..+|+|+||.|++ .+..+.+.+.  +...+.   ..|. .+
T Consensus       462 ~r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~--~~~~~~---~~L~-~l  535 (633)
T TIGR02442       462 GRAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTS--SVELAA---RRLE-EL  535 (633)
T ss_pred             CCCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCC--CHHHHH---HHHH-hC
Confidence            44567899999999999874 899999999888754 56799999999986 4666666543  444333   4454 57


Q ss_pred             CCCCCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCch---hHH---HHHHHHHHHcCCCCCceEEEEEecCC-
Q 007207          400 IAGGSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDE---RQI---CDAMKSRLTNGGSICPRIYTFGIGSY-  468 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~---~~~---~~~~~~~~~~~~~~~~~i~tigiG~~-  468 (613)
                      ..+|+|++..||..|++.+..    .+...+.|||+|||..+..   ...   ...+.+.+.+   .++.+++|+.+.. 
T Consensus       536 ~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~---~~i~~~vIdt~~~~  612 (633)
T TIGR02442       536 PTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAA---RGILFVVIDTESGF  612 (633)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHh---cCCeEEEEeCCCCC
Confidence            789999999999999998872    3345679999999998652   111   1222233322   3477888877653 


Q ss_pred             CCHHHHHHHHHhcCcEEEEc
Q 007207          469 CNHYFLRMLAMISRGYYGAA  488 (613)
Q Consensus       469 ~~~~~L~~lA~~~gG~~~~v  488 (613)
                      ....+++.||+.+||.|+.+
T Consensus       613 ~~~~~~~~lA~~~gg~y~~l  632 (633)
T TIGR02442       613 VRLGLAEDLARALGGEYVRL  632 (633)
T ss_pred             cchhHHHHHHHhhCCeEEec
Confidence            45689999999999999875

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=99.50  E-value=4.1e-13  Score=130.58  Aligned_cols=147  Identities=20%  Similarity=0.275  Sum_probs=106.4

Q ss_pred             CceEEEEEeCCCCCCCC-------cHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh
Q 007207          326 KKDVIFIVDISGSMQGK-------PLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG  396 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~-------~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~  396 (613)
                      +++++|+||.||||...       +++.+++++..++..+.  +.++++++.|++....+.+.    +...+.+++   .
T Consensus         2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~~~~----~~~~v~~~~---~   74 (199)
T cd01457           2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRYDNV----NSSKVDQLF---A   74 (199)
T ss_pred             CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccccCCc----CHHHHHHHH---h
Confidence            57999999999999853       79999999999887654  46789999999887554433    344444444   3


Q ss_pred             hcCCCCCCcchHHHHHHHHHHHhcCC----C--CccEEEEEecCCcCchhHHHHHHHHHHHcC-CCCCceEEEEEecCC-
Q 007207          397 INFIAGGSTNICAPLTKAVEMLTNSR----G--SIPIIFLVTDGAVEDERQICDAMKSRLTNG-GSICPRIYTFGIGSY-  468 (613)
Q Consensus       397 ~~~~~~GgT~l~~aL~~A~~~l~~~~----~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~-~~~~~~i~tigiG~~-  468 (613)
                       .+.+.|+|++..+|..+++.+....    .  ....||++|||.+++...+.+.+.+..++. ....+.+++|++|.+ 
T Consensus        75 -~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~  153 (199)
T cd01457          75 -ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDP  153 (199)
T ss_pred             -cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcH
Confidence             5667899999999999986443221    1  147899999999987666555554443321 113488999999986 


Q ss_pred             CCHHHHHHHHHh
Q 007207          469 CNHYFLRMLAMI  480 (613)
Q Consensus       469 ~~~~~L~~lA~~  480 (613)
                      .+..+|+.|+..
T Consensus       154 ~~~~~L~~ld~~  165 (199)
T cd01457         154 AATAFLKALDDQ  165 (199)
T ss_pred             HHHHHHHHHhHH
Confidence            466789999864

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most

>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins

Probab=99.39  E-value=3.3e-11  Score=114.48  Aligned_cols=155  Identities=13%  Similarity=0.145  Sum_probs=113.9

Q ss_pred             eEEEEEeCCCCCCC-----CcHHHHHHHHHHHHH---hCCCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhhc
Q 007207          328 DVIFIVDISGSMQG-----KPLEDTKNALAVALS---KLDPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGIN  398 (613)
Q Consensus       328 ~vvfviD~SgSM~g-----~~~~~ak~al~~~l~---~L~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~~  398 (613)
                      .++|+||.|.||..     .|++.+|+++..++.   ...+.++++|+.|.+ .+....+.+.  +...+..+++    .
T Consensus         5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~--D~~~~~~~L~----~   78 (187)
T cd01452           5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTN--DQGKILSKLH----D   78 (187)
T ss_pred             EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCC--CHHHHHHHHH----h
Confidence            47899999999985     489999999998752   345688999999999 8888888866  6666666665    4


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCC--C-ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC-CCHHHH
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNSRG--S-IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-CNHYFL  474 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~~~--~-~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~-~~~~~L  474 (613)
                      +.++|+|++..||+.|...|...+.  . .+.|+|++++...++..+.+.+++..+    .++++++||+|.. .|...|
T Consensus        79 i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk----~~I~v~vI~~G~~~~~~~~l  154 (187)
T cd01452          79 VQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKK----NNVSVDIINFGEIDDNTEKL  154 (187)
T ss_pred             CCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHH----cCCeEEEEEeCCCCCCHHHH
Confidence            5568999999999999999976544  3 366777777755666665555554432    3499999999954 466777


Q ss_pred             HHHHHhcC----cEEEEcCCCc
Q 007207          475 RMLAMISR----GYYGAAYDLD  492 (613)
Q Consensus       475 ~~lA~~~g----G~~~~v~~~~  492 (613)
                      +.+.+.-+    -++..+....
T Consensus       155 ~~~~~~~~~~~~s~~~~~~~~~  176 (187)
T cd01452         155 TAFIDAVNGKDGSHLVSVPPGE  176 (187)
T ss_pred             HHHHHHhcCCCCceEEEeCCCC
Confidence            77766532    3455555544

It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.

>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts

Probab=99.35  E-value=6.3e-11  Score=112.19  Aligned_cols=159  Identities=19%  Similarity=0.249  Sum_probs=115.1

Q ss_pred             ceEEEEEeCCCCCCCC----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC---
Q 007207          327 KDVIFIVDISGSMQGK----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF---  399 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~---  399 (613)
                      ..|++|||.||||++.    ..+.+.+-+..+-.+|.++-.+-++.|+++.....+.    +..+....++.+....   
T Consensus         2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v----t~~~~~~~v~~~~~~~~~~   77 (200)
T PF10138_consen    2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV----TLDNYEGYVDELHAGLPDW   77 (200)
T ss_pred             cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc----CHHHHHHHHHHHhcccccc
Confidence            3689999999999963    4555555555555678888889999999998775543    6666666666554222   


Q ss_pred             CCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          400 IAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      ...|+|+...+|+.+++.......  .+-.|+++|||.+++..++.+.+++.    ....+-+--||||.+ +..+|+.|
T Consensus        78 ~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~~~~~~~~i~~a----s~~pifwqFVgiG~~-~f~fL~kL  152 (200)
T PF10138_consen   78 GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDDRRAIEKLIREA----SDEPIFWQFVGIGDS-NFGFLEKL  152 (200)
T ss_pred             CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccchHHHHHHHHhc----cCCCeeEEEEEecCC-cchHHHHh
Confidence            456899999999999998874322  25689999999999887777766655    334466778899987 58999999


Q ss_pred             HHhcC-----cEEEEcCCCcHH
Q 007207          478 AMISR-----GYYGAAYDLDSI  494 (613)
Q Consensus       478 A~~~g-----G~~~~v~~~~~l  494 (613)
                      ....|     ..|+.+.+.+++
T Consensus       153 D~l~gR~vDNa~Ff~~~d~~~l  174 (200)
T PF10138_consen  153 DDLAGRVVDNAGFFAIDDIDEL  174 (200)
T ss_pred             hccCCcccCCcCeEecCCcccC
Confidence            88422     225556665443

>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=99.30  E-value=1.4e-11  Score=129.62  Aligned_cols=146  Identities=23%  Similarity=0.267  Sum_probs=108.1

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHH-hCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST  405 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~-~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT  405 (613)
                      ..|++|||.||||.|.+...||..+..++. .+..+-++.++.|++........   .-..++.++++++.  ...+|||
T Consensus       273 GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~---~k~~~~~e~i~fL~--~~f~GGT  347 (437)
T COG2425         273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELY---EKKIDIEELIEFLS--YVFGGGT  347 (437)
T ss_pred             CCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeec---CCccCHHHHHHHHh--hhcCCCC
Confidence            779999999999999999999987777664 35677789999999944322211   12336788899885  4556669


Q ss_pred             chHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhc
Q 007207          406 NICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMIS  481 (613)
Q Consensus       406 ~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~  481 (613)
                      |+..||..|++.+....-....+|+||||...-.++....+....+.   ...++|+|.||.. +..-|.+++...
T Consensus       348 D~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~~~~~~~v~e~~k~---~~~rl~aV~I~~~-~~~~l~~Isd~~  419 (437)
T COG2425         348 DITKALRSALEDLKSRELFKADIVVITDGEDERLDDFLRKVKELKKR---RNARLHAVLIGGY-GKPGLMRISDHI  419 (437)
T ss_pred             ChHHHHHHHHHHhhcccccCCCEEEEeccHhhhhhHHHHHHHHHHHH---hhceEEEEEecCC-CCcccceeeeee
Confidence            99999999999998665555689999999975444455555554432   3478999999986 444566676654

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family

Probab=99.29  E-value=1.6e-10  Score=115.72  Aligned_cols=172  Identities=14%  Similarity=0.167  Sum_probs=116.8

Q ss_pred             CCceEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          325 FKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      .+-+|+|+||.|.||...     +++ +|..+..++..+. .++++|+.|++++....|++...+.   +.+.+.+....
T Consensus        59 r~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le-~g~vgVv~Fg~~~~~v~Plt~d~~~---~a~~~~l~~~~  133 (266)
T cd01460          59 RDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLE-VGQLGVCSFGEDVQILHPFDEQFSS---QSGPRILNQFT  133 (266)
T ss_pred             cCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCc-CCcEEEEEeCCCceEeCCCCCCchh---hHHHHHhCccc
Confidence            568899999999999753     344 7888888887775 6899999999999999998774443   45555555334


Q ss_pred             CCCCCcchHHHHHHHHHHHhcCC----CC--ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC-CH-
Q 007207          400 IAGGSTNICAPLTKAVEMLTNSR----GS--IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC-NH-  471 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~~----~~--~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~-~~-  471 (613)
                      ...+||++..+|..+.+.+....    ..  .+.+|++|||...+.+.......+.+.+   .++.++.|++-+.. +. 
T Consensus       134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e---~~i~l~~I~ld~~~~~~S  210 (266)
T cd01460         134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREARE---QNVFVVFIIIDNPDNKQS  210 (266)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHH---cCCeEEEEEEcCCCCCCC
Confidence            56689999999999999987541    11  2899999999943222222222222322   24889999986541 11 


Q ss_pred             ---------------HHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHH
Q 007207          472 ---------------YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTR  504 (613)
Q Consensus       472 ---------------~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~  504 (613)
                                     .+-+-+-..+--+|..+.|-++|++.+..++++
T Consensus       211 I~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~~~~~~lp~~l~~~lrq  258 (266)
T cd01460         211 ILDIKVVSFKNDKSGVITPYLDEFPFPYYVIVRDLNQLPSVLSDALRQ  258 (266)
T ss_pred             cccccccccCCCCccHHHHHHhcCCCCeEEEecChhHhHHHHHHHHHH
Confidence                           122233344445567777777777776666554

The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.

>PRK10997 yieM hypothetical protein; Provisional

Probab=99.21  E-value=3e-10  Score=122.09  Aligned_cols=144  Identities=16%  Similarity=0.165  Sum_probs=105.8

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHH-hCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALS-KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~-~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      ...+..++++||+||||.|.+...||..+..+.. .+..+++++++.|++..... +..   ....+.++++++. . ..
T Consensus       320 ~~~kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~-~l~---~~~gl~~ll~fL~-~-~f  393 (487)
T PRK10997        320 EQPRGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTY-ELT---GPDGLEQAIRFLS-Q-SF  393 (487)
T ss_pred             CCCCCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceee-ccC---CccCHHHHHHHHH-H-hc
Confidence            4567899999999999999888888875555543 56789999999999987653 221   3345677777775 2 35


Q ss_pred             CCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCc-hhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207          402 GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVED-ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR  475 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~-~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~  475 (613)
                      +|||++..+|+.+++.+....-....||++||+.... ..+..+.++...+.   .+.++|++.+|...+..+++
T Consensus       394 ~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~---~~~rf~~l~i~~~~~p~l~~  465 (487)
T PRK10997        394 RGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQ---HQHRFHAVAMSAHGKPGIMR  465 (487)
T ss_pred             CCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHh---cCcEEEEEEeCCCCCchHHH
Confidence            8999999999999999875444456899999997643 34455555444322   24799999999866665543

>cd01458 vWA_ku Ku70/Ku80 N-terminal domain

Probab=99.11  E-value=1.7e-09  Score=106.81  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=97.5

Q ss_pred             eEEEEEeCCCCCC-------CCcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce----------eeeccccccCHHH
Q 007207          328 DVIFIVDISGSMQ-------GKPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY----------LFSTSMELATKEA  387 (613)
Q Consensus       328 ~vvfviD~SgSM~-------g~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~----------~~~~~~~~~~~~~  387 (613)
                      .++|+||+|.||.       ..+++.+++++..++.+   -.++|+++|+.|+++..          .+.+. ...+.+.
T Consensus         3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l-~~~~~~~   81 (218)
T cd01458           3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDL-DTPGAER   81 (218)
T ss_pred             EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecC-CCCCHHH
Confidence            5899999999994       25899999999999987   47899999999999742          12222 2336666


Q ss_pred             HHHHHHHHhhcCC-------CCCCcchHHHHHHHHHHHhc--CCCCccEEEEEecCCcCch--hHHHHHHHHHHHcCCCC
Q 007207          388 VERAHQWIGINFI-------AGGSTNICAPLTKAVEMLTN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSI  456 (613)
Q Consensus       388 ~~~a~~~i~~~~~-------~~GgT~l~~aL~~A~~~l~~--~~~~~~~IillTDG~~~~~--~~~~~~~~~~~~~~~~~  456 (613)
                      ++...+.+.....       ..++|++..||..|.+++..  .....+.|||+|||.....  ......+...+......
T Consensus        82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~  161 (218)
T cd01458          82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK  161 (218)
T ss_pred             HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            6666665542211       35789999999999999975  2334689999999986421  11112222222222334


Q ss_pred             CceEEEEEecCCC
Q 007207          457 CPRIYTFGIGSYC  469 (613)
Q Consensus       457 ~~~i~tigiG~~~  469 (613)
                      ++.+++||+|...
T Consensus       162 gI~i~~i~i~~~~  174 (218)
T cd01458         162 GIELELFPLSSPG  174 (218)
T ss_pred             CcEEEEEecCCCC
Confidence            6999999998753

The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.

>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain

Probab=99.06  E-value=3.2e-09  Score=101.32  Aligned_cols=174  Identities=18%  Similarity=0.277  Sum_probs=107.8

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC-CCeEEEEEeCCcce-------eeeccccccCHHHHHHHHHHH
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETY-------LFSTSMELATKEAVERAHQWI  395 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~-~d~~~Ii~F~~~~~-------~~~~~~~~~~~~~~~~a~~~i  395 (613)
                      ....-|.||||+||||.|.+++.|..++..+.+.|.. +..+-|+.|.+.+.       .|...-.+..+..+.+....+
T Consensus        10 ~~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~v   89 (219)
T PF11775_consen   10 FRDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHIV   89 (219)
T ss_pred             cCCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHHH
Confidence            3455688999999999999999887766666555543 77889999988742       121111111222222222221


Q ss_pred             hhc---------------CCCC-CCcch-HHHHHHHHHHHhcCCCCccEEEEEecCCcCch-------hHH-HHHHHHHH
Q 007207          396 GIN---------------FIAG-GSTNI-CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE-------RQI-CDAMKSRL  450 (613)
Q Consensus       396 ~~~---------------~~~~-GgT~l-~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~-------~~~-~~~~~~~~  450 (613)
                      .+.               +..+ ..-|+ ++||.+|.+.|.+.+...+.++++|||.|.+.       ... ...+++.+
T Consensus        90 yk~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi  169 (219)
T PF11775_consen   90 YKDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVI  169 (219)
T ss_pred             HHhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcccccccCChHHHHHHHHHHH
Confidence            100               1111 12222 78999999999888888999999999999632       222 22223333


Q ss_pred             Hc-CCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          451 TN-GGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       451 ~~-~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      +. ....++.+..||||.++.+++ +        .+..+.+.+++...+...+.++.
T Consensus       170 ~~ie~~~~Vel~aiGIg~D~~~yY-~--------~~~~i~~~e~l~~~~~~~l~~l~  217 (219)
T PF11775_consen  170 AEIETRSDVELIAIGIGHDVSRYY-R--------RAVTIDDVEELGGALFEQLARLF  217 (219)
T ss_pred             HHHhccCCcEEEEEEcCCCchhhc-c--------cceecCCHHHHHHHHHHHHHHHh
Confidence            22 122358899999998754422 1        34567888888888877776653

>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex

Probab=98.83  E-value=1.1e-07  Score=90.32  Aligned_cols=157  Identities=16%  Similarity=0.213  Sum_probs=116.6

Q ss_pred             EEeCCCCCCC-----CcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          332 IVDISGSMQG-----KPLEDTKNALAVALSKL---DPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       332 viD~SgSM~g-----~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      |||.|.+|..     +|+..+.+++..|+..+   +|-.+++|+...+. ++.+.++..  +.....+++..+. ...+.
T Consensus         1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsg--n~~~h~~~L~~~~-~~~~~   77 (193)
T PF04056_consen    1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSG--NPQEHIEALKKLR-KLEPS   77 (193)
T ss_pred             CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCC--CHHHHHHHHHHhc-cCCCC
Confidence            6899999985     47888888888887653   56779999999875 666666654  6777777777665 56789


Q ss_pred             CCcchHHHHHHHHHHHhcCCC-CccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207          403 GSTNICAPLTKAVEMLTNSRG-SIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI  480 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~~~~-~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~  480 (613)
                      |...+..||+.|...|...+. ..|.|+++.-+..+ |+.++.+.+....+    .++|+.+||++.  .-+.++.|++.
T Consensus        78 G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~----~~IrvsvI~laa--Ev~I~k~i~~~  151 (193)
T PF04056_consen   78 GEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKK----ENIRVSVISLAA--EVYICKKICKE  151 (193)
T ss_pred             CChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHH----cCCEEEEEEEhH--HHHHHHHHHHh
Confidence            999999999999999986543 24566666644333 44555555544432    249999999986  45789999999


Q ss_pred             cCcEEEEcCCCcHHHHH
Q 007207          481 SRGYYGAAYDLDSIEIQ  497 (613)
Q Consensus       481 ~gG~~~~v~~~~~l~~~  497 (613)
                      |||.|..+-|.+.+.+.
T Consensus       152 T~G~y~V~lde~H~~~l  168 (193)
T PF04056_consen  152 TGGTYGVILDEDHFKEL  168 (193)
T ss_pred             hCCEEEEecCHHHHHHH
Confidence            99999998887665544

This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent

>TIGR01651 CobT cobaltochelatase, CobT subunit

Probab=98.81  E-value=3.2e-08  Score=107.05  Aligned_cols=175  Identities=17%  Similarity=0.242  Sum_probs=105.6

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCccee-------eeccccccCHHHHHH----
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYL-------FSTSMELATKEAVER----  390 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~-------~~~~~~~~~~~~~~~----  390 (613)
                      .....-|.|+||+||||.+.++..|..++..+.+.|. .+..+-|+.|.+.+..       |...-.+..+..+..    
T Consensus       389 ~~~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt~aw~gg~~re~w~~~g~p~~PgRlN~l~hi  468 (600)
T TIGR01651       389 EFRDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREKWLKAGKPAAPGRLNDLRHI  468 (600)
T ss_pred             CCCCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecccccccccchHHHHhcCCCCCCcccchhhhh
Confidence            3345678899999999999888877765555555554 3778999999986421       111111111111111    


Q ss_pred             -----------HHHHHhhcCC--CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh--------HHHHHHHHH
Q 007207          391 -----------AHQWIGINFI--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER--------QICDAMKSR  449 (613)
Q Consensus       391 -----------a~~~i~~~~~--~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~--------~~~~~~~~~  449 (613)
                                 +...+...+.  ....-.=+.||.+|.+.|..++...+.+++||||.|.+..        -....++..
T Consensus       469 iyk~ad~~wr~~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~v  548 (600)
T TIGR01651       469 IYKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDGAPVDDSTLSVNPGNYLERHLRAV  548 (600)
T ss_pred             hhhccccchhhhccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCCCcCCccccccCchhHHHHHHHHH
Confidence                       1110100000  0001111789999999999888889999999999986432        122223333


Q ss_pred             HHcCCC-CCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          450 LTNGGS-ICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       450 ~~~~~~-~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      +..... .++.+..||||.++.+++         ..++.|.+.++|..+|.+.+..+.
T Consensus       549 i~~~e~~~~vel~aigIg~Dv~r~Y---------~~~v~i~~~~eL~~~~~~qLa~Lf  597 (600)
T TIGR01651       549 IEEIETRSPVELLAIGIGHDVTRYY---------RRAVTIVDAEELAGAMTEQLAALF  597 (600)
T ss_pred             HHHHhccCCceEEEeeccccHHHHc---------cccceecCHHHHHHHHHHHHHHHh
Confidence            322222 358999999998854433         334578888888888877666553

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown

Probab=98.78  E-value=9.3e-08  Score=94.44  Aligned_cols=131  Identities=15%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh-hcCCC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG-INFIA  401 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~-~~~~~  401 (613)
                      +..+..+++|+|+||||.+- ...+-..+..+....   .++.++.|++....+.+.....+..   +++..+. .....
T Consensus        54 ~~~~~~lvvl~DvSGSM~~~-s~~~l~~~~~l~~~~---~~~~~f~F~~~l~~vT~~l~~~~~~---~~l~~~~~~~~~~  126 (222)
T PF05762_consen   54 PRKPRRLVVLCDVSGSMAGY-SEFMLAFLYALQRQF---RRVRVFVFSTRLTEVTPLLRRRDPE---EALARLSALVQSF  126 (222)
T ss_pred             cCCCccEEEEEeCCCChHHH-HHHHHHHHHHHHHhC---CCEEEEEEeeehhhhhhhhccCCHH---HHHHHHHhhccCC
Confidence            34556999999999999752 122222333333333   3899999999876554433322332   2233221 12347


Q ss_pred             CCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEE
Q 007207          402 GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFG  464 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tig  464 (613)
                      +|||+++.+|..+.+.+....-....+|++|||.. ++.....+.+.+...+    +.+++.+.
T Consensus       127 ~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r----~~rviwLn  186 (222)
T PF05762_consen  127 GGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRR----GRRVIWLN  186 (222)
T ss_pred             CCccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHh----CCEEEEEC
Confidence            89999999999999987632224568999999954 4444445555444322    24565553

It is found as part of a CO oxidising (Cox) system operon in several bacteria [].

>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function

Probab=98.58  E-value=2.1e-07  Score=83.22  Aligned_cols=96  Identities=20%  Similarity=0.271  Sum_probs=68.7

Q ss_pred             EEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcchH
Q 007207          329 VIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNIC  408 (613)
Q Consensus       329 vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l~  408 (613)
                      ++++||+||||..+.+.+....+..+++..  +.++.|+.|+...+.......      .......+  ....+|||++.
T Consensus         1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~~~------~~~~~~~~--~~~GgGGTdf~   70 (126)
T PF09967_consen    1 IVVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVFRS------LEDELRDI--KLKGGGGTDFR   70 (126)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEEec------cccccccc--ccCCCCCCcch
Confidence            578999999998777777777777777766  557999999998876543221      11222222  35678999999


Q ss_pred             HHHHHHHHHHhcCCCCccEEEEEecCCcCc
Q 007207          409 APLTKAVEMLTNSRGSIPIIFLVTDGAVED  438 (613)
Q Consensus       409 ~aL~~A~~~l~~~~~~~~~IillTDG~~~~  438 (613)
                      .+++.+.+.    ......+|++|||....
T Consensus        71 pvf~~~~~~----~~~~~~vi~fTDg~~~~   96 (126)
T PF09967_consen   71 PVFEYLEEN----RPRPSVVIYFTDGEGWP   96 (126)
T ss_pred             HHHHHHHhc----CCCCCEEEEEeCCCCCC
Confidence            999988764    22356788999998643

>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.51  E-value=2.4e-06  Score=87.58  Aligned_cols=159  Identities=25%  Similarity=0.331  Sum_probs=111.7

Q ss_pred             CCCceEEEEEeCCCCCC--C--CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          324 VFKKDVIFIVDISGSMQ--G--KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~--g--~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      .....+++++|||-||.  |  .++.+..-|+..++..--++|.+.+|.|+..++.+.       ...       +. .+
T Consensus       461 rt~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~l~~i~Fgr~A~~v~-------v~e-------Lt-~l  525 (652)
T COG4867         461 RTQAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDALQIIAFGRYARTVT-------AAE-------LT-GL  525 (652)
T ss_pred             hcccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcceEEEeccchhcccC-------HHH-------Hh-cC
Confidence            45567899999999997  3  356666667777776666899999999999876531       111       11 12


Q ss_pred             C--CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC------c-----------hhHHHHHHHHHHHcCCCCCceE
Q 007207          400 I--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE------D-----------ERQICDAMKSRLTNGGSICPRI  460 (613)
Q Consensus       400 ~--~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~------~-----------~~~~~~~~~~~~~~~~~~~~~i  460 (613)
                      .  ..-|||+..||..|-..+...++..++|+++|||+++      +           +..+...++. +.+....++.+
T Consensus       526 ~~v~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~-~d~~~r~G~q~  604 (652)
T COG4867         526 AGVYEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRG-FDDMARLGAQV  604 (652)
T ss_pred             CCccccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHH-HHHHHhcccee
Confidence            2  2358999999999999998877788899999999984      1           1222333332 22333345677


Q ss_pred             EEEEecCCCC-HHHHHHHHHhcCcEEEEcCCCcHHHHHHH
Q 007207          461 YTFGIGSYCN-HYFLRMLAMISRGYYGAAYDLDSIEIQMQ  499 (613)
Q Consensus       461 ~tigiG~~~~-~~~L~~lA~~~gG~~~~v~~~~~l~~~l~  499 (613)
                      .+|-+|.+.. ..|++++|+..+|..++ .+.+.+-..+.
T Consensus       605 t~FrLg~DpgL~~Fv~qva~rv~G~vv~-pdldglGaaVv  643 (652)
T COG4867         605 TIFRLGSDPGLARFIDQVARRVQGRVVV-PDLDGLGAAVV  643 (652)
T ss_pred             eEEeecCCHhHHHHHHHHHHHhCCeEEe-cCcchhhHHHH
Confidence            8888887544 36999999999999876 56666655443

>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]

Probab=98.46  E-value=5.1e-07  Score=95.26  Aligned_cols=177  Identities=15%  Similarity=0.181  Sum_probs=118.7

Q ss_pred             CCceEEEEEeCCCCCCCCcHHH-------HHHHHHHHHHhCC-CCCeEEEEEeCCcceeeec--cccccCHHHHHHHHHH
Q 007207          325 FKKDVIFIVDISGSMQGKPLED-------TKNALAVALSKLD-PGDSFNIVAFNGETYLFST--SMELATKEAVERAHQW  394 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~-------ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~--~~~~~~~~~~~~a~~~  394 (613)
                      ....+.+++|+|.||.. +++.       -+++++.+-..+. -++...+..|.+..+.|.-  ....++...-...-..
T Consensus       445 ~Dla~TLLvD~S~St~a-~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~~R  523 (637)
T COG4548         445 HDLAFTLLVDVSASTDA-KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVGPR  523 (637)
T ss_pred             ccceeEEEeecccchHH-HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccchh
Confidence            45668899999999974 4444       4444444433332 3788889999888765432  1222233222233334


Q ss_pred             HhhcCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-----HHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207          395 IGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-----QICDAMKSRLTNGGSICPRIYTFGIGSYC  469 (613)
Q Consensus       395 i~~~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-----~~~~~~~~~~~~~~~~~~~i~tigiG~~~  469 (613)
                      |. .+.++-.|.++.||+.|.+.|...+...+.+|++|||.+++-.     .-+....+++....+.++.+|.|-+..+.
T Consensus       524 Im-ALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtld~ea  602 (637)
T COG4548         524 IM-ALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTLDREA  602 (637)
T ss_pred             he-ecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEecchh
Confidence            44 6788899999999999999998888889999999999997432     12222333333334556889998887653


Q ss_pred             CHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          470 NHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       470 ~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      -. .+.  +..+.+.|.+|.+...|+..+-.+++++.
T Consensus       603 ~~-y~p--~~fgqngYa~V~~v~~LP~~L~~lyrkL~  636 (637)
T COG4548         603 IS-YLP--ALFGQNGYAFVERVAQLPGALPPLYRKLL  636 (637)
T ss_pred             hh-hhH--HHhccCceEEccchhhcchhHHHHHHHhc
Confidence            33 233  23455678899999999999999988764

>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]

Probab=98.34  E-value=1.3e-05  Score=79.61  Aligned_cols=170  Identities=14%  Similarity=0.207  Sum_probs=116.9

Q ss_pred             CCceEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhC---CCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHH
Q 007207          325 FKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKL---DPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWI  395 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i  395 (613)
                      .=+.+++|||.|.+|...     ++....+.+..|+..+   +|-.+++||.-.+. +..+...+.  +.+....++.  
T Consensus        59 iiRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltg--np~~hI~aL~--  134 (378)
T KOG2807|consen   59 IIRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTG--NPRIHIHALK--  134 (378)
T ss_pred             hheeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcC--CHHHHHHHHh--
Confidence            447899999999999863     5666667777777654   35668899888765 444444332  4444444443  


Q ss_pred             hhcCCCCCCcchHHHHHHHHHHHhcCCCCc-c-EEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHH
Q 007207          396 GINFIAGGSTNICAPLTKAVEMLTNSRGSI-P-IIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYF  473 (613)
Q Consensus       396 ~~~~~~~GgT~l~~aL~~A~~~l~~~~~~~-~-~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~  473 (613)
                       ......|.-.+..||+.|.+.|...++.. | ++|+++.=...|+.++.+.+.....    .++|+..||+..  ....
T Consensus       135 -~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~tI~~lk~----~kIRvsvIgLsa--Ev~i  207 (378)
T KOG2807|consen  135 -GLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYETIDKLKA----YKIRVSVIGLSA--EVFI  207 (378)
T ss_pred             -cccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHHHHHHHHh----hCeEEEEEeech--hHHH
Confidence             23357888999999999999998876543 4 4455544444566666666655432    348999999875  5578


Q ss_pred             HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccce
Q 007207          474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      .+.|+++|+|.|..+-|...+.+    ++.+...|.
T Consensus       208 cK~l~kaT~G~Y~V~lDe~Hlke----Ll~e~~~Pp  239 (378)
T KOG2807|consen  208 CKELCKATGGRYSVALDEGHLKE----LLLEHTHPP  239 (378)
T ss_pred             HHHHHHhhCCeEEEEeCHHHHHH----HHHhcCCCC
Confidence            99999999999999888776654    444555444

>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.31  E-value=1.2e-05  Score=86.72  Aligned_cols=170  Identities=27%  Similarity=0.334  Sum_probs=128.2

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      ...+.+.++++|+|+||.+..+..++.+...++..+.+.+.+.++.|........+.....+...+..++.   ....+.
T Consensus        34 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~  110 (399)
T COG2304          34 LLVPANLTLAIDTSGSMTGALLELAKSAAIELVNGLNPGDLLSIVTFAGSADVLIPPTGATNKESITAAID---QSLQAG  110 (399)
T ss_pred             cccCcceEEEeccCCCccchhHHHHHHHHHHHhcccCCCCceEEEEecCCcceecCcccccCHHHHHHHHh---hhhccc
Confidence            55788999999999999998899999999999999999999999999996666555443446666666665   336789


Q ss_pred             CCcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207          403 GSTNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI  480 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~  480 (613)
                      |.|.+..++..+++.+...  .+....+.+.|||..+........+..........++.+.++|+|.+.+.+.+..++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~n~~~~~~~~~~  190 (399)
T COG2304         111 GATAVEASLSLAVELAAKALPRGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDVNEDELTGIAAA  190 (399)
T ss_pred             cccHHHHHHHHHHHHhhhcCCccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEecccccchhhhhhhhhc
Confidence            9999999999999887652  34466899999988742211111122222222234688999999999999999999999


Q ss_pred             cCcEEEEcCCCcHHH
Q 007207          481 SRGYYGAAYDLDSIE  495 (613)
Q Consensus       481 ~gG~~~~v~~~~~l~  495 (613)
                      ..|...++.....-.
T Consensus       191 ~~g~l~~~~~~~~~~  205 (399)
T COG2304         191 ANGNLAFIYLSSLSE  205 (399)
T ss_pred             cCcccccccCccccc
Confidence            888887777664443

>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

Probab=98.30  E-value=4.2e-06  Score=86.61  Aligned_cols=168  Identities=20%  Similarity=0.269  Sum_probs=105.7

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCccee-------eeccccccCHHHHHHHHHHHhh-
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYL-------FSTSMELATKEAVERAHQWIGI-  397 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~-------~~~~~~~~~~~~~~~a~~~i~~-  397 (613)
                      .-|.+|||.||||.|.+|..|..+...+...|. .+..+-|..|.+.++.       |...-.+..+..+......+.. 
T Consensus       414 tvVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhiiyks  493 (620)
T COG4547         414 TVVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHIIYKS  493 (620)
T ss_pred             hhheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHHHhc
Confidence            346799999999999999999888887777775 4788888888875422       2222222233222222221110 


Q ss_pred             ----------cCCC--CCC---cch-HHHHHHHHHHHhcCCCCccEEEEEecCCcCch--------hH---HHHHHHHHH
Q 007207          398 ----------NFIA--GGS---TNI-CAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE--------RQ---ICDAMKSRL  450 (613)
Q Consensus       398 ----------~~~~--~Gg---T~l-~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~--------~~---~~~~~~~~~  450 (613)
                                ++..  .-|   -|+ ++||-+|.+.|-.++...+.+++||||.+-+.        .-   -+..+.+.+
T Consensus       494 AdaPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpEqrkIlmmiSDGAPvddstlsvnpGnylerHLRaVieeI  573 (620)
T COG4547         494 ADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRKILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEI  573 (620)
T ss_pred             cCCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChhhceEEEEecCCCcccccccccCCchHHHHHHHHHHHHH
Confidence                      1110  111   122 67999999998888888899999999998432        11   223333333


Q ss_pred             HcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207          451 TNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG  505 (613)
Q Consensus       451 ~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~  505 (613)
                      ..  ...+.+.+||||.++.+++-+..+         +-+.++|...|...+..+
T Consensus       574 Et--rSpveLlAIGighDvtRyYrravt---------iVdaeeL~gamteqLa~l  617 (620)
T COG4547         574 ET--RSPVELLAIGIGHDVTRYYRRAVT---------IVDAEELAGAMTEQLAAL  617 (620)
T ss_pred             hc--CCchhheeeecccccchhhhhhee---------EecHHHhchHHHHHHHHH
Confidence            32  235789999999998887766432         445677766666555544

>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []

Probab=98.28  E-value=2.9e-05  Score=77.89  Aligned_cols=164  Identities=16%  Similarity=0.201  Sum_probs=100.9

Q ss_pred             CCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeee--c-------------------c-
Q 007207          325 FKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFS--T-------------------S-  379 (613)
Q Consensus       325 ~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~--~-------------------~-  379 (613)
                      .|-.++||||+|.. ....-++.++++++..|+.++  ++.+|+|++|++..+.+.  .                   . 
T Consensus         2 ~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~~   81 (243)
T PF04811_consen    2 QPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPLP   81 (243)
T ss_dssp             S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSSTS
T ss_pred             CCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCCc
Confidence            45679999999854 444578999999999999999  899999999998765431  1                   0 


Q ss_pred             ---cc--ccCHHHHHHHHHHHhhcCC----CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh----------
Q 007207          380 ---ME--LATKEAVERAHQWIGINFI----AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER----------  440 (613)
Q Consensus       380 ---~~--~~~~~~~~~a~~~i~~~~~----~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~----------  440 (613)
                         ..  ....+.+.++++.|.....    ...+..++.||+.|..++..... ...|++++-|.++-+.          
T Consensus        82 ~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~-gGkI~~F~s~~pt~G~Gg~l~~~~~~  160 (243)
T PF04811_consen   82 DGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNT-GGKILVFTSGPPTYGPGGSLKKREDS  160 (243)
T ss_dssp             SSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS--EEEEEEESS---SSSTTSS-SBTTS
T ss_pred             ccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhcccc-CCEEEEEeccCCCCCCCceecccccc
Confidence               00  1135677888887763222    22467789999999999983222 2356777777653111          


Q ss_pred             -----------------HHHHHHHHHHHcCCCCCceEEEEEecC-CCCHHHHHHHHHhcCcEEEEcCCCc
Q 007207          441 -----------------QICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       441 -----------------~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~~L~~lA~~~gG~~~~v~~~~  492 (613)
                                       +..+.+...+.+.   ++.|..+..+. .++-..|..|++.|||..++..+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~~---~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~  227 (243)
T PF04811_consen  161 SHYDTEKEKALLLPPANEFYKKLAEECSKQ---GISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFN  227 (243)
T ss_dssp             CCCCHCTTHHCHSHSSSHHHHHHHHHHHHC---TEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTT
T ss_pred             cccccccchhhhccccchHHHHHHHHHHhc---CCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCC
Confidence                             1233444444332   24555555553 4678889999999999988887766

COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....

>KOG3768 consensus DEAD box RNA helicase [General function prediction only]

Probab=98.26  E-value=1.3e-05  Score=85.36  Aligned_cols=174  Identities=18%  Similarity=0.280  Sum_probs=113.5

Q ss_pred             EEEEEeCCCCCCCC------cHHHHHHHHHHHHHhCC-----CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhh
Q 007207          329 VIFIVDISGSMQGK------PLEDTKNALAVALSKLD-----PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI  397 (613)
Q Consensus       329 vvfviD~SgSM~g~------~~~~ak~al~~~l~~L~-----~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  397 (613)
                      +.|+||+||||..+      -++.||.|+..|++.-.     .+||+-+++|..-...+.-.+    .++-.-.++.|+ 
T Consensus         4 ~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~----~~~~a~~~~eik-   78 (888)
T KOG3768|consen    4 FLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVAC----EKLGAVVIEEIK-   78 (888)
T ss_pred             EEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHH----hhcccHHHHHHH-
Confidence            67999999999853      58999999999996531     389999999988654332221    222233455555 


Q ss_pred             cCC-CCCCcchHHHHHHHHHHHhcCC----------CC------ccEEEEEecCCc-CchhHH--------------HHH
Q 007207          398 NFI-AGGSTNICAPLTKAVEMLTNSR----------GS------IPIIFLVTDGAV-EDERQI--------------CDA  445 (613)
Q Consensus       398 ~~~-~~GgT~l~~aL~~A~~~l~~~~----------~~------~~~IillTDG~~-~~~~~~--------------~~~  445 (613)
                      .+. ..|.+....++..|+++|.-..          ++      ...||+||||.- +....+              .+.
T Consensus        79 ~l~a~~~s~~~~~~~t~AFdlLnlnR~qtGID~yGqGR~pf~lEP~~iI~iTDG~r~s~~~GV~~e~~Lpl~~p~pGse~  158 (888)
T KOG3768|consen   79 KLHAPYGSCQLHHAITEAFDLLNLNRVQTGIDGYGQGRLPFNLEPVTIILITDGGRYSGVAGVPIEFRLPLDPPFPGSEM  158 (888)
T ss_pred             hhcCccchhhhhHHHHHHhhhhhhhhhhhcccccccccCccccCceEEEEEecCCccccccCCceeEEeccCCCCCcccc
Confidence            444 4566677788888999885321          11      348999999931 100000              001


Q ss_pred             HHHHHHcCCCCCceEEEEEe---cC-----------CCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhccceee
Q 007207          446 MKSRLTNGGSICPRIYTFGI---GS-----------YCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLA  511 (613)
Q Consensus       446 ~~~~~~~~~~~~~~i~tigi---G~-----------~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~  511 (613)
                      .++..    +=+-|+|++-+   |.           ..|...++.|.+.+||+.+.+.+...+.+.++.++.+...-++-
T Consensus       159 TkepF----RWDQrlftlVlRiPgt~~~~~~qlt~Vp~Dds~IermCevTGGRSysV~Spr~lnqciesLvqkvQ~gVvv  234 (888)
T KOG3768|consen  159 TKEPF----RWDQRLFTLVLRIPGTPYPTISQLTAVPIDDSVIERMCEVTGGRSYSVVSPRQLNQCIESLVQKVQYGVVV  234 (888)
T ss_pred             ccccc----hhhhhhheeeEecCCCCCccHhhhcCCCCCchhhHHhhhhcCCceeeeeCHHHHHHHHHHHHHhhccCeEE
Confidence            11110    11135666654   21           23556799999999999999999999999999998887655543

>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length

Probab=98.25  E-value=7.4e-05  Score=71.53  Aligned_cols=177  Identities=17%  Similarity=0.195  Sum_probs=117.4

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh------CC--C--CCeEEEEEeCC--cceeeeccccccCHHHHHHHHH
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSK------LD--P--GDSFNIVAFNG--ETYLFSTSMELATKEAVERAHQ  393 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~------L~--~--~d~~~Ii~F~~--~~~~~~~~~~~~~~~~~~~a~~  393 (613)
                      ..++++.+|.|+||....+..-++.+...|..      +.  +  ...++++.|++  ......+.+...+..+...+.+
T Consensus         3 dlaLvLavDvS~SVD~~E~~lQ~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A~   82 (205)
T PF06707_consen    3 DLALVLAVDVSGSVDADEYRLQREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFAA   82 (205)
T ss_pred             cceeeeeeeccCCCCHHHHHHHHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHHH
Confidence            46799999999999987666666655554421      21  2  34577788887  4566678777778888888877


Q ss_pred             HHhhc-CCCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207          394 WIGIN-FIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN  470 (613)
Q Consensus       394 ~i~~~-~~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~  470 (613)
                      .|... ....++|.|+.||..+..+|.+.+.  .++.|=+-.||..|.........+......   ++.|+.+.|+....
T Consensus        83 ~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~---GitINgL~I~~~~~  159 (205)
T PF06707_consen   83 RLRAAPRRFGGRTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAA---GITINGLAILDDDP  159 (205)
T ss_pred             HHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHC---CeEEeeeEecCCCC
Confidence            77632 2345679999999999999987654  355677778999877644444455544433   48899998875432


Q ss_pred             -------HHHHHHHHHhcCc-EEEEcCCCcHHHHHHH-HHHHHhc
Q 007207          471 -------HYFLRMLAMISRG-YYGAAYDLDSIEIQMQ-KLFTRGF  506 (613)
Q Consensus       471 -------~~~L~~lA~~~gG-~~~~v~~~~~l~~~l~-~~~~~~~  506 (613)
                             .++-+.+- .|.| ....+.+.++..++|. |++.++.
T Consensus       160 ~~~~~L~~yy~~~VI-gGpgAFV~~a~~~~df~~AirrKL~rEi~  203 (205)
T PF06707_consen  160 FGGADLDAYYRRCVI-GGPGAFVETARGFEDFAEAIRRKLIREIA  203 (205)
T ss_pred             CccccHHHHHhhhcc-cCCCceEEEcCCHHHHHHHHHHHHHHHhc
Confidence                   23333332 2445 4455667777777775 4555543

The function of this family is unknown.

>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium

Probab=98.25  E-value=3.9e-05  Score=76.71  Aligned_cols=148  Identities=19%  Similarity=0.196  Sum_probs=101.2

Q ss_pred             ceEEEEEeCCCCCC---------------CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCccee---eeccc-------c
Q 007207          327 KDVIFIVDISGSMQ---------------GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYL---FSTSM-------E  381 (613)
Q Consensus       327 ~~vvfviD~SgSM~---------------g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~---~~~~~-------~  381 (613)
                      .++++-||.++|=.               ....+.|.+++..++..+..+.+|-++.|+.....   .....       .
T Consensus        32 ~nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~p~  111 (254)
T cd01459          32 SNLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFGFGAIVTKDQSVFSFFPGYSESPE  111 (254)
T ss_pred             eeEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEeecccCCCCCccccccCCCCCCCc
Confidence            46777777777642               13567788888888888888999999999985421   11110       0


Q ss_pred             ccCHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCCCC--ccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCce
Q 007207          382 LATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGS--IPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPR  459 (613)
Q Consensus       382 ~~~~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~~~~~--~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~  459 (613)
                      ...-+.+.++-+..-......|.|++...|+.|.+........  .-+++++|||..++..+..+.+.++-    ...+.
T Consensus       112 ~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i~D~~~t~~aIv~AS----~~PlS  187 (254)
T cd01459         112 CQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEITDMNETIKAIVEAS----KYPLS  187 (254)
T ss_pred             ccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCcccHHHHHHHHHHHh----cCCeE
Confidence            0112333333332223566789999999999998877644322  44689999999999887777776552    34577


Q ss_pred             EEEEEecCCCCHHHHHHHHH
Q 007207          460 IYTFGIGSYCNHYFLRMLAM  479 (613)
Q Consensus       460 i~tigiG~~~~~~~L~~lA~  479 (613)
                      |..||+|+. +...|+.|-.
T Consensus       188 IiiVGVGd~-~F~~M~~LD~  206 (254)
T cd01459         188 IVIVGVGDG-PFDAMERLDD  206 (254)
T ss_pred             EEEEEeCCC-ChHHHHHhcC
Confidence            888899975 8888988865

They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.

>cd01468 trunk_domain trunk domain

Probab=98.24  E-value=0.0001  Score=73.77  Aligned_cols=163  Identities=14%  Similarity=0.161  Sum_probs=107.9

Q ss_pred             CCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeeecc---------------------c
Q 007207          325 FKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFSTS---------------------M  380 (613)
Q Consensus       325 ~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~~~---------------------~  380 (613)
                      .|..++||||+|.. ....-++.+++++...++.|+  ++.+|+||+|++....+.-.                     .
T Consensus         2 ~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~~   81 (239)
T cd01468           2 QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPLP   81 (239)
T ss_pred             CCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCCc
Confidence            46778999999974 444568999999999999999  89999999999866443100                     0


Q ss_pred             ----cc--cCHHHHHHHHHHHhhcC----CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCch-----------
Q 007207          381 ----EL--ATKEAVERAHQWIGINF----IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE-----------  439 (613)
Q Consensus       381 ----~~--~~~~~~~~a~~~i~~~~----~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~-----------  439 (613)
                          .+  -..+.+.++++.|....    ....+..++.||..|..++.... ....|++++.|.++-+           
T Consensus        82 ~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~-~gGkI~~f~sg~pt~GpG~l~~~~~~~  160 (239)
T cd01468          82 DRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF-AGGRIIVFQGGLPTVGPGKLKSREDKE  160 (239)
T ss_pred             CceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC-CCceEEEEECCCCCCCCCccccCcccc
Confidence                00  01244566666665322    22356789999999999997652 1336888888887511           


Q ss_pred             --------------hHHHHHHHHHHHcCCCCCceEEEEEecC-CCCHHHHHHHHHhcCcEEEEcCCC
Q 007207          440 --------------RQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMISRGYYGAAYDL  491 (613)
Q Consensus       440 --------------~~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~~L~~lA~~~gG~~~~v~~~  491 (613)
                                    ....+.+...+.+   .++.+..+..+. .++-..|..|++.|||..++-.+.
T Consensus       161 ~~~~~~e~~~~~~a~~fY~~la~~~~~---~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f  224 (239)
T cd01468         161 PIRSHDEAQLLKPATKFYKSLAKECVK---SGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSF  224 (239)
T ss_pred             cCCCccchhcccccHHHHHHHHHHHHH---cCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCC
Confidence                          0122223333322   224455554443 467788999999999998887765

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.

>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles

Probab=98.17  E-value=0.0001  Score=73.96  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=102.6

Q ss_pred             CCceEEEEEeCCCCCC-CCcHHHHHHHHHHHHHhCCCC---CeEEEEEeCCcceeee--c------------ccc---c-
Q 007207          325 FKKDVIFIVDISGSMQ-GKPLEDTKNALAVALSKLDPG---DSFNIVAFNGETYLFS--T------------SME---L-  382 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~-g~~~~~ak~al~~~l~~L~~~---d~~~Ii~F~~~~~~~~--~------------~~~---~-  382 (613)
                      .|-.++||||+|-.-- ..-++.++++++..|+.++++   .+|+||+|++..+.+.  .            ...   + 
T Consensus         2 ~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~   81 (244)
T cd01479           2 QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPL   81 (244)
T ss_pred             CCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCC
Confidence            4667999999975432 225899999999999999876   8999999999764421  0            000   0 


Q ss_pred             ---------cCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-----------
Q 007207          383 ---------ATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-----------  440 (613)
Q Consensus       383 ---------~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-----------  440 (613)
                               -..+.+.++++.|....  ....+..++.||+.|..+++...+   .|++++.|.++-+.           
T Consensus        82 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~GG---kIi~f~s~~pt~GpG~l~~~~~~~~  158 (244)
T cd01479          82 PDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETGG---KIIVFQSSLPTLGAGKLKSREDPKL  158 (244)
T ss_pred             CcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcCC---EEEEEeCCCCCcCCcccccCccccc
Confidence                     02344555666554211  233567899999999999985433   67888888764211           


Q ss_pred             --------------HHHHHHHHHHHcCCCCCceEEEEEec-CCCCHHHHHHHHHhcCcEEEEcC
Q 007207          441 --------------QICDAMKSRLTNGGSICPRIYTFGIG-SYCNHYFLRMLAMISRGYYGAAY  489 (613)
Q Consensus       441 --------------~~~~~~~~~~~~~~~~~~~i~tigiG-~~~~~~~L~~lA~~~gG~~~~v~  489 (613)
                                    ...+.+...+.+   .++.|..|.+. ..++-..|..+++.|||..++..
T Consensus       159 ~~~~~e~~~~~p~~~fY~~la~~~~~---~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~  219 (244)
T cd01479         159 LSTDKEKQLLQPQTDFYKKLALECVK---SQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYP  219 (244)
T ss_pred             cCchhhhhhcCcchHHHHHHHHHHHH---cCeEEEEEEccCcccChhhhhhhhhhcCceEEEEC
Confidence                          112222222222   22444444443 34688889999999999988776

The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24

>PRK05325 hypothetical protein; Provisional

Probab=97.78  E-value=0.00046  Score=72.80  Aligned_cols=163  Identities=14%  Similarity=0.153  Sum_probs=100.5

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      ...-+++++|+||||.+..-+.||..-..+-.-|. .-.++-++.-.++...+     .++.++      +.  ...-.|
T Consensus       221 s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~Ak-----EVdEee------FF--~~~esG  287 (401)
T PRK05325        221 SQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAK-----EVDEEE------FF--YSRESG  287 (401)
T ss_pred             CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCcee-----EcCHHH------cc--ccCCCC
Confidence            34456678999999998877888876544333333 23556666555554322     123321      22  245679


Q ss_pred             CcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcCc--hhHHHHHHHHHHHcCCCCCceEEEEE-ecCCC--CHHHHH
Q 007207          404 STNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVED--ERQICDAMKSRLTNGGSICPRIYTFG-IGSYC--NHYFLR  475 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~~--~~~~~~~~~~~~~~~~~~~~~i~tig-iG~~~--~~~~L~  475 (613)
                      ||-+..|++.+.+.+...   ...+-.++-.|||..++  ...+...+.+.+-..    .+.|+.+ |+...  +..+++
T Consensus       288 GT~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp~----~~~f~Y~Ev~~~~~~~~~l~~  363 (401)
T PRK05325        288 GTIVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLPV----CNYFAYIEVTPRAYRHQTLWR  363 (401)
T ss_pred             CeEehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHHH----hhheEEEEecCCCCCchHHHH
Confidence            999999999999999753   23356889999999753  344555555333110    2344443 44432  445555


Q ss_pred             HHHHhcCc----EEEEcCCCcHHHHHHHHHHHH
Q 007207          476 MLAMISRG----YYGAAYDLDSIEIQMQKLFTR  504 (613)
Q Consensus       476 ~lA~~~gG----~~~~v~~~~~l~~~l~~~~~~  504 (613)
                      ........    ....+.+.+++-.+|..+|.+
T Consensus       364 ~y~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k  396 (401)
T PRK05325        364 EYERLQDTFPNFAMQRIRDKEDIYPVFRELFKK  396 (401)
T ss_pred             HHHHhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence            55544432    345678888998888888854

>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles

Probab=97.73  E-value=0.0012  Score=66.86  Aligned_cols=164  Identities=15%  Similarity=0.144  Sum_probs=103.3

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeecc-c-----------c-----------
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTS-M-----------E-----------  381 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~-~-----------~-----------  381 (613)
                      .|-.++||||+|-.  ...++.+|+++...|+.|+++.+|+||+|++.++.+.=. .           .           
T Consensus         2 ~pp~~vFviDvs~~--~~el~~l~~sl~~~L~~lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~~~~l   79 (267)
T cd01478           2 SPPVFLFVVDTCMD--EEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDML   79 (267)
T ss_pred             CCCEEEEEEECccC--HHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHHHHHh
Confidence            35679999999764  556999999999999999999999999999987543200 0           0           


Q ss_pred             ---------------------------------ccCHHHHHHHHHHHhhcC-----CCCCCcchHHHHHHHHHHHhcC-C
Q 007207          382 ---------------------------------LATKEAVERAHQWIGINF-----IAGGSTNICAPLTKAVEMLTNS-R  422 (613)
Q Consensus       382 ---------------------------------~~~~~~~~~a~~~i~~~~-----~~~GgT~l~~aL~~A~~~l~~~-~  422 (613)
                                                       .-.+..+..+++.|....     .......++.||+.|..++... +
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~~~~~  159 (267)
T cd01478          80 GLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFP  159 (267)
T ss_pred             ccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHHhhcC
Confidence                                             001234445555553211     1224567899999999998732 1


Q ss_pred             CCccEEEEEecCCcCchh------------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHH
Q 007207          423 GSIPIIFLVTDGAVEDER------------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHY  472 (613)
Q Consensus       423 ~~~~~IillTDG~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~  472 (613)
                      .....|++++-|-++-+.                              ...+.+...+.+ ....+.+|..+. +.++-.
T Consensus       160 ~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~-~~vsvDlF~~s~-d~vgla  237 (267)
T cd01478         160 NTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAA-NGHAVDIFAGCL-DQVGLL  237 (267)
T ss_pred             CCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHh-CCeEEEEEeccc-cccCHH
Confidence            122367777777653110                              011111111211 223345555543 347889


Q ss_pred             HHHHHHHhcCcEEEEcCCCc
Q 007207          473 FLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       473 ~L~~lA~~~gG~~~~v~~~~  492 (613)
                      .|..+++.|||..++..+..
T Consensus       238 em~~l~~~TGG~v~~~~~f~  257 (267)
T cd01478         238 EMKVLVNSTGGHVVLSDSFT  257 (267)
T ss_pred             HHHHHHHhcCcEEEEeCCcc
Confidence            99999999999988877664

The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24

>PTZ00395 Sec24-related protein; Provisional

Probab=97.67  E-value=0.014  Score=69.03  Aligned_cols=268  Identities=12%  Similarity=0.103  Sum_probs=151.0

Q ss_pred             CCCCceEEEEEeCCC-CCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeee-----------------------
Q 007207          323 KVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFS-----------------------  377 (613)
Q Consensus       323 ~~~~~~vvfviD~Sg-SM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~-----------------------  377 (613)
                      .+.|-.++||||+|- |+..--+..+.++++..|+.++ +..+|+||+|++....+.                       
T Consensus       949 ~p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395        949 NMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred             CCCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCCCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence            567789999999994 4443456778888888888886 578999999998753221                       


Q ss_pred             -----------ccc-----c--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC
Q 007207          378 -----------TSM-----E--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE  437 (613)
Q Consensus       378 -----------~~~-----~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~  437 (613)
                                 |+.     .  .-+.+.++.+++.|....  ....+..++.||+.|+..|....+.-+++++.+ ..|+
T Consensus      1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~S-SLPn 1107 (1560)
T PTZ00395       1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYT-TTPN 1107 (1560)
T ss_pred             EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEc-CCCC
Confidence                       111     0  012345666666665322  223567889999999999987653344555544 4442


Q ss_pred             ch--------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCC--CHHHHHHHHHhcCcEEEEcCCCc---
Q 007207          438 DE--------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYC--NHYFLRMLAMISRGYYGAAYDLD---  492 (613)
Q Consensus       438 ~~--------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~--~~~~L~~lA~~~gG~~~~v~~~~---  492 (613)
                      -+                    ....+.+...+.+ ....+.+|.++- ..+  +-.-|..|++.|||..++-....   
T Consensus      1108 iGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk-~qISVDLFLfSs-qYvDVDVATLg~Lsr~TGGqlyyYPnFna~r 1185 (1560)
T PTZ00395       1108 CGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYA-FNISVDIFIISS-NNVRVCVPSLQYVAQNTGGKILFVENFLWQK 1185 (1560)
T ss_pred             CCCCcccccccccccccccccchHHHHHHHHHHHh-cCCceEEEEccC-cccccccccccchhcccceeEEEeCCCcccc
Confidence            11                    1122333333322 234455555432 222  34568999999999977655542   


Q ss_pred             HHHHHHHHHHHHhcc-ceee--eEEEEecCCCCceeec-------------cCCCCCCCCCCcEEEEEEEcCCCCC--eE
Q 007207          493 SIEIQMQKLFTRGFS-SVLA--NIAIDTLKDLDEFEMY-------------PSRIPDLSSESPLIVSGRYQGKFPD--TL  554 (613)
Q Consensus       493 ~l~~~l~~~~~~~~~-p~l~--~i~l~~~~~~~~~~v~-------------p~~ip~l~~g~~~~v~g~~~~~~~~--~v  554 (613)
                      +-.....++.+.+.. +..-  -++++...++.....+             -..+|.+...+.+.|.-++.++...  .+
T Consensus      1186 D~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~~~~~A 1265 (1560)
T PTZ00395       1186 DYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISESKKQI 1265 (1560)
T ss_pred             cHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccCCCCcE
Confidence            222333444455443 3322  3455555554333333             1246777788888888888765432  22


Q ss_pred             EEEE----Ee-CCcc---cEEEEEecccc--------CCCcHHHHHHHHHHHHHH
Q 007207          555 KAKG----FL-GDLS---NFVVELKLQLA--------KDIPLDRICAKQQIDLLT  593 (613)
Q Consensus       555 ~l~g----~~-~~~~---~~~~~l~~~~~--------~~~~l~~lwA~~~I~~L~  593 (613)
                      -+..    +. .+++   -+++.+++...        +-..+-.+++|..+....
T Consensus      1266 YFQaALLYTSssGERRIRVHTLALPVTSsLseVFrsADqdAIvslLAK~AV~~aL 1320 (1560)
T PTZ00395       1266 YFQCACIYTNLWGDRFVRLHTTHMNLTSSLSTVFRYTDAEALMNILIKQLCTNIL 1320 (1560)
T ss_pred             EEEEEEeeccCCCcEEEEEEeeeecccCCHHHHHHhhcHHHHHHHHHHHHHHHhc
Confidence            2221    11 2222   35666666432        113456667777776544

>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region)

Probab=97.62  E-value=0.0042  Score=65.77  Aligned_cols=183  Identities=14%  Similarity=0.183  Sum_probs=105.9

Q ss_pred             eEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCccee----------
Q 007207          309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK---LDPGDSFNIVAFNGETYL----------  375 (613)
Q Consensus       309 ~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~~----------  375 (613)
                      .|.+.+.+.     +..|.|++|++|.|+||.. .++.+|.....+.+.   +..+-|+++-+|-+....          
T Consensus        87 ~f~~~~~~a-----~~yPvDLYyLMDlS~SM~d-dl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l  160 (423)
T smart00187       87 NFTLTVRQA-----EDYPVDLYYLMDLSYSMKD-DLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKL  160 (423)
T ss_pred             EEEEEEEec-----ccCccceEEEEeCCccHHH-HHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHh
Confidence            455555443     4479999999999999975 577777777766655   446788998888765210          


Q ss_pred             -------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHH---HHHhcCCCCccEEE
Q 007207          376 -------------------FSTSMELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAV---EMLTNSRGSIPIIF  429 (613)
Q Consensus       376 -------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~---~~l~~~~~~~~~Ii  429 (613)
                                         ..+++.  +..   +..+.+. .....|+-+-    ..||..|.   +.+.=+++..+.+|
T Consensus       161 ~~PC~~~~~~c~p~f~f~~~L~LT~--~~~---~F~~~V~-~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv  234 (423)
T smart00187      161 ENPCPNYNLTCEPPYGFKHVLSLTD--DTD---EFNEEVK-KQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLV  234 (423)
T ss_pred             cCCCcCCCCCcCCCcceeeeccCCC--CHH---HHHHHHh-hceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEE
Confidence                               011111  333   3444443 3444555442    33443333   23322345678999


Q ss_pred             EEecCCcC--------------------------------chhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          430 LVTDGAVE--------------------------------DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       430 llTDG~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      +.||+...                                |.. ....+.+.+.+.+ . ..||++  -.. ...+.+.|
T Consensus       235 ~~TDa~fH~AGDGkLaGIv~PNDg~CHL~~~g~Yt~s~~~DYP-Si~ql~~kL~e~n-I-~~IFAV--T~~-~~~~Y~~L  308 (423)
T smart00187      235 FSTDAGFHFAGDGKLAGIVQPNDGQCHLDNNGEYTMSTTQDYP-SIGQLNQKLAENN-I-NPIFAV--TKK-QVSLYKEL  308 (423)
T ss_pred             EEcCCCccccCCcceeeEecCCCCcceeCCCCCcCccCcCCCC-CHHHHHHHHHhcC-c-eEEEEE--ccc-chhHHHHH
Confidence            99998752                                111 2344444444322 1 345554  222 23466777


Q ss_pred             HHhcCcEEEE--cCCCcHHHHHHHHHHHHhccce
Q 007207          478 AMISRGYYGA--AYDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       478 A~~~gG~~~~--v~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      +..-.|...-  ..|...+.+.+.+.+.++.+.+
T Consensus       309 s~lipgs~vg~Ls~DSsNIv~LI~~aY~~i~S~V  342 (423)
T smart00187      309 SALIPGSSVGVLSEDSSNVVELIKDAYNKISSRV  342 (423)
T ss_pred             HHhcCcceeeecccCcchHHHHHHHHHHhhceEE
Confidence            7766666543  3566778888888888876644

Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=97.58  E-value=0.0018  Score=68.96  Aligned_cols=160  Identities=17%  Similarity=0.184  Sum_probs=96.1

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC-CCeEEE--EEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNI--VAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~-~d~~~I--i~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      ...-+++++|+||||...+-..||.....+..-|.. -.++-+  |...+.+..+       +.+      ++.  ...-
T Consensus       245 s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y~~Ve~vfI~H~t~A~EV-------dEe------~FF--~~~e  309 (421)
T PF04285_consen  245 SNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKYENVEIVFIRHHTEAKEV-------DEE------EFF--HSRE  309 (421)
T ss_pred             CcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceEEe-------cHH------Hhc--ccCC
Confidence            344566779999999988778888765544333332 233444  4444444332       322      122  2456


Q ss_pred             CCCcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcC--chhHHHHHHH-HHHHcCCCCCceEEEEE-ecCCCCH---
Q 007207          402 GGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVE--DERQICDAMK-SRLTNGGSICPRIYTFG-IGSYCNH---  471 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~~~-~~~~~~~~~~~~i~tig-iG~~~~~---  471 (613)
                      +|||-+..|++.+.+++...   ...+-.++-+|||..+  |.......+. +.+..     +..|..+ |+.....   
T Consensus       310 sGGT~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp~-----~~~f~Y~Ei~~~~~~~~~  384 (421)
T PF04285_consen  310 SGGTRVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLPV-----CNYFGYGEITQPGRHSSW  384 (421)
T ss_pred             CCCeEehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHHh-----cCeEEEEEeccCccchHH
Confidence            89999999999999999752   2335688999999975  3344555555 33321     2344443 3311122   


Q ss_pred             HHHHHHHHhcCc-EEEEcCCCcHHHHHHHHHHHH
Q 007207          472 YFLRMLAMISRG-YYGAAYDLDSIEIQMQKLFTR  504 (613)
Q Consensus       472 ~~L~~lA~~~gG-~~~~v~~~~~l~~~l~~~~~~  504 (613)
                      ..++.+...... ....+.+.+++-.+|..+|++
T Consensus       385 ~~~~~~~~~~~~f~~~~i~~~~di~~~~r~~f~~  418 (421)
T PF04285_consen  385 REYEELKESHDNFAMVRIREKEDIYPVFRELFKK  418 (421)
T ss_pred             HHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence            234554433333 244678888999999988865

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

>PLN00162 transport protein sec23; Provisional

Probab=97.54  E-value=0.0043  Score=72.13  Aligned_cols=178  Identities=13%  Similarity=0.164  Sum_probs=111.3

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeec------------ccccc-------
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFST------------SMELA-------  383 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~------------~~~~~-------  383 (613)
                      ...|--++||||+|  +....++..|+++...|+.|+++.+|+||+|++.++.+.=            .....       
T Consensus       121 ~~~pp~fvFvID~s--~~~~~l~~lk~sl~~~L~~LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~  198 (761)
T PLN00162        121 APSPPVFVFVVDTC--MIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILE  198 (761)
T ss_pred             CCCCcEEEEEEecc--hhHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHH
Confidence            45677899999998  4556789999999999999999999999999998754320            00000       


Q ss_pred             -------------------------------------CHHHHHHHHHHHhhcCC--C---CCCcchHHHHHHHHHHHhcC
Q 007207          384 -------------------------------------TKEAVERAHQWIGINFI--A---GGSTNICAPLTKAVEMLTNS  421 (613)
Q Consensus       384 -------------------------------------~~~~~~~a~~~i~~~~~--~---~GgT~l~~aL~~A~~~l~~~  421 (613)
                                                           ....+..+++.|.....  .   .....++.||..|..++...
T Consensus       199 ~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~  278 (761)
T PLN00162        199 QLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGAC  278 (761)
T ss_pred             HhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhc
Confidence                                                 11345555565542210  1   12456899999999998632


Q ss_pred             -CCCccEEEEEecCCcCchh------------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 007207          422 -RGSIPIIFLVTDGAVEDER------------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCN  470 (613)
Q Consensus       422 -~~~~~~IillTDG~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~  470 (613)
                       ++....|++++-|-++.+.                              ...+.+...+.+ ....+.+|..+. +.++
T Consensus       279 ~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~-~gisvDlF~~s~-dqvg  356 (761)
T PLN00162        279 VPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVA-QGHVLDVFACSL-DQVG  356 (761)
T ss_pred             cCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHH-cCceEEEEEccc-cccC
Confidence             1223467777777653110                              011112222222 223345555444 3468


Q ss_pred             HHHHHHHHHhcCcEEEEcCCCcH--HHHHHHHHHHH
Q 007207          471 HYFLRMLAMISRGYYGAAYDLDS--IEIQMQKLFTR  504 (613)
Q Consensus       471 ~~~L~~lA~~~gG~~~~v~~~~~--l~~~l~~~~~~  504 (613)
                      -..|+.+++.|||..+.-.+.+.  +.+.+.+++.+
T Consensus       357 laem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r  392 (761)
T PLN00162        357 VAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFER  392 (761)
T ss_pred             HHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhcc
Confidence            88999999999999887766643  45555555553

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=97.53  E-value=0.0019  Score=67.02  Aligned_cols=158  Identities=16%  Similarity=0.113  Sum_probs=91.3

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      ...-+++++|+||||....-+.||..-..+..-|. .-.++-++.-.++....     ..+.++      +.  ...-.|
T Consensus       201 s~AV~fc~MDvSGSM~~~~K~lak~ff~~ly~FL~~~Y~~VeivFI~H~t~Ak-----EVdEee------FF--~~~EsG  267 (371)
T TIGR02877       201 SNAVVIAMMDTSGSMGQFKKYIARSFFFWMVKFLRTKYENVEICFISHHTEAK-----EVTEEE------FF--HKGESG  267 (371)
T ss_pred             CcEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCeeE-----EcCHHH------hc--ccCCCC
Confidence            44456678999999998777888876544433333 23456666665554322     123332      22  235679


Q ss_pred             CcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcC--chhHHHHHHHHHHHcCCCCCceEEEEE-ecC-CCCHHHHHH
Q 007207          404 STNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVE--DERQICDAMKSRLTNGGSICPRIYTFG-IGS-YCNHYFLRM  476 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~--~~~~~~~~~~~~~~~~~~~~~~i~tig-iG~-~~~~~~L~~  476 (613)
                      ||-+..|++.+.+.+..+   ...+-..+-.|||..+  |...+...+.+.+..     .+.|+.+ |+. .....++..
T Consensus       268 GT~vSSA~~l~~eII~~rYpp~~wNIY~f~aSDGDNw~~D~~~c~~ll~~llp~-----~~~f~Y~Ei~~~~~~~~l~~~  342 (371)
T TIGR02877       268 GTYCSSGYKKALEIIDERYNPARYNIYAFHFSDGDNLTSDNERAVKLVRKLLEV-----CNLFGYGEIMPYGYSNTLKNK  342 (371)
T ss_pred             CeEehHHHHHHHHHHHhhCChhhCeeEEEEcccCCCccCCcHHHHHHHHHHHHh-----hheEEEEEecCCCCcchHHHH
Confidence            999999999999999753   1235578899999975  344455555554321     2344433 333 112233322


Q ss_pred             ----HHHhcCcEEEEcCCCcHHHHHHHHH
Q 007207          477 ----LAMISRGYYGAAYDLDSIEIQMQKL  501 (613)
Q Consensus       477 ----lA~~~gG~~~~v~~~~~l~~~l~~~  501 (613)
                          |.. .+=....+.+.+++-.+|..+
T Consensus       343 y~~~i~~-~~f~~~~I~~~~dIyp~~r~l  370 (371)
T TIGR02877       343 FKNEIKD-PNFVPLIIRDKEDLYPALKKF  370 (371)
T ss_pred             HHhhhcC-CCeEEEEeCCHHHHHHHHHHh
Confidence                332 222244566666666666554

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.47  E-value=0.00095  Score=68.40  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc-CCC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN-FIA  401 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~-~~~  401 (613)
                      ...+..+++++|+||||++  +...--.+...+.+.  -.++-+..|++...........   .....|+..+... ...
T Consensus       215 r~~~~~lvvL~DVSGSm~~--ys~~~L~l~hAl~q~--~~R~~~F~F~TRLt~vT~~l~~---rD~~~Al~~~~a~v~dw  287 (395)
T COG3552         215 RRRKPPLVVLCDVSGSMSG--YSRIFLHLLHALRQQ--RSRVHVFLFGTRLTRVTHMLRE---RDLEDALRRLSAQVKDW  287 (395)
T ss_pred             ccCCCCeEEEEecccchhh--hHHHHHHHHHHHHhc--ccceeEEEeechHHHHHHHhcc---CCHHHHHHHHHhhcccc
Confidence            4457889999999999975  222222222223233  3455589999986655444332   2333444444312 245


Q ss_pred             CCCcchHHHHHHHHHHHhcC-CCCccEEEEEecCCcCchhHHH
Q 007207          402 GGSTNICAPLTKAVEMLTNS-RGSIPIIFLVTDGAVEDERQIC  443 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~-~~~~~~IillTDG~~~~~~~~~  443 (613)
                      .|||.|+.++..-.+..... -.....|+++|||-..+.....
T Consensus       288 ~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd~~~~l  330 (395)
T COG3552         288 DGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRDDIPEL  330 (395)
T ss_pred             cCCcchhHHHHHHHccccccccCCceEEEEEecccccCCchHH
Confidence            79999999987654432211 1223589999999986554333

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.45  E-value=0.0023  Score=69.17  Aligned_cols=152  Identities=20%  Similarity=0.227  Sum_probs=106.8

Q ss_pred             CCceEEEEEeCCCCCC---------------CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcce------eeec--cc-
Q 007207          325 FKKDVIFIVDISGSMQ---------------GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETY------LFST--SM-  380 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~---------------g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~------~~~~--~~-  380 (613)
                      ...++++-||-+.|=.               -...++|..++-..+....++.+|--..||...-      ..+.  +. 
T Consensus       284 ~~lnf~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~  363 (529)
T KOG1327|consen  284 EQLNFTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNP  363 (529)
T ss_pred             ceeeeEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCC
Confidence            4567788888887732               2367888888888898888899999999998721      1111  10 


Q ss_pred             ---cccCHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhcCC---CCccEEEEEecCCcCchhHHHHHHHHHHHcCC
Q 007207          381 ---ELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR---GSIPIIFLVTDGAVEDERQICDAMKSRLTNGG  454 (613)
Q Consensus       381 ---~~~~~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~~~---~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~  454 (613)
                         ....-+.+-+|-+..-.++...|.|++..-|..+.+...+..   ..--+++++|||.+++..+..+.+.++    .
T Consensus       364 ~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~A----S  439 (529)
T KOG1327|consen  364 EDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSA----S  439 (529)
T ss_pred             CCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhh----c
Confidence               011234445555444457788999999999999998876653   334488999999999987766665544    3


Q ss_pred             CCCceEEEEEecCCCCHHHHHHHHHhc
Q 007207          455 SICPRIYTFGIGSYCNHYFLRMLAMIS  481 (613)
Q Consensus       455 ~~~~~i~tigiG~~~~~~~L~~lA~~~  481 (613)
                      .....|..||+|+ .+.+.|+.|-...
T Consensus       440 ~lPlSIIiVGVGd-~df~~M~~lD~d~  465 (529)
T KOG1327|consen  440 DLPLSIIIVGVGD-ADFDMMRELDGDD  465 (529)
T ss_pred             cCCeEEEEEEeCC-CCHHHHHHhhcCC
Confidence            4557788999995 4888888885543

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0069  Score=67.86  Aligned_cols=180  Identities=16%  Similarity=0.141  Sum_probs=112.1

Q ss_pred             eEEEEEecCCCCCCCCCCceEEEEEeCCCCCC-CCcHHHHHHHHHHHHHhCC--CCCeEEEEEeCCcceeee--------
Q 007207          309 MFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQ-GKPLEDTKNALAVALSKLD--PGDSFNIVAFNGETYLFS--------  377 (613)
Q Consensus       309 ~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~-g~~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~~~--------  377 (613)
                      .++=++.|.+-.-+++.|.-++||+|+|-|-. ..-++.+++++..-|+.|+  +..+|++|+|++....+.        
T Consensus       277 s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp  356 (887)
T KOG1985|consen  277 SVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQP  356 (887)
T ss_pred             eeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCC
Confidence            45557889887777889999999999996544 3367889999999999998  678999999998754321        


Q ss_pred             -------------ccc----c--ccCHHHHHHHHHHHhhcCCC--CCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCc
Q 007207          378 -------------TSM----E--LATKEAVERAHQWIGINFIA--GGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV  436 (613)
Q Consensus       378 -------------~~~----~--~~~~~~~~~a~~~i~~~~~~--~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~  436 (613)
                                   +..    .  ...++.++.+++.+......  .-+..++.||+.|+.++....+  + |+++.-+.+
T Consensus       357 ~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~~GG--r-i~vf~s~lP  433 (887)
T KOG1985|consen  357 QMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGSTGG--R-ISVFQSTLP  433 (887)
T ss_pred             ceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhhcCC--e-EEEEeccCC
Confidence                         000    0  01234455666665533322  3467899999999999986555  3 444444444


Q ss_pred             Cch---------------hHHH-------HHHHHHHHcCCCCCceEEEEEec-CCCCHHHHHHHHHhcCcEEEEcCCC
Q 007207          437 EDE---------------RQIC-------DAMKSRLTNGGSICPRIYTFGIG-SYCNHYFLRMLAMISRGYYGAAYDL  491 (613)
Q Consensus       437 ~~~---------------~~~~-------~~~~~~~~~~~~~~~~i~tigiG-~~~~~~~L~~lA~~~gG~~~~v~~~  491 (613)
                      +-+               .+..       ...++......+..+.|.-|-+. ...|-.-|..|++.+||..++-.+.
T Consensus       434 nlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f  511 (887)
T KOG1985|consen  434 NLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSF  511 (887)
T ss_pred             CCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhhhccccccCceeEEccCC
Confidence            311               0000       11111111112223444445443 3456778999999999986654443

>TIGR00627 tfb4 transcription factor tfb4

Probab=97.32  E-value=0.0098  Score=60.26  Aligned_cols=171  Identities=15%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             ceEEEEEeCCCCCCC--------CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcc-eeeecccc-----c-------
Q 007207          327 KDVIFIVDISGSMQG--------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGET-YLFSTSME-----L-------  382 (613)
Q Consensus       327 ~~vvfviD~SgSM~g--------~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~-~~~~~~~~-----~-------  382 (613)
                      .-+++|||++.--.|        ..+..+-+++..|++.   +....++.||+..+.. ..+.|...     .       
T Consensus         3 slL~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~   82 (279)
T TIGR00627         3 SLLVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKR   82 (279)
T ss_pred             cEEEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccc
Confidence            346788998865431        2566666666666653   5678899999887653 23233210     0       


Q ss_pred             -----------cCHHHHHHHHHHHhhcC---CCCCCcchHHHHHHHHHHHhcCC-------CCccEEEEEecCCcCchhH
Q 007207          383 -----------ATKEAVERAHQWIGINF---IAGGSTNICAPLTKAVEMLTNSR-------GSIPIIFLVTDGAVEDERQ  441 (613)
Q Consensus       383 -----------~~~~~~~~a~~~i~~~~---~~~GgT~l~~aL~~A~~~l~~~~-------~~~~~IillTDG~~~~~~~  441 (613)
                                 .+..-+.+..+.+....   ...+.+.+..||..|+-.+++..       .-..+|++++-+. +...+
T Consensus        83 ~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-~~~~q  161 (279)
T TIGR00627        83 LRELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-DMALQ  161 (279)
T ss_pred             ccchhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-CchHH
Confidence                       00011112222222111   12257789999999998876421       1245677776553 33333


Q ss_pred             HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHH
Q 007207          442 ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQ  499 (613)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~  499 (613)
                      ....+ +.+....+.+++|.+++++.+.+..+|++++..|||.|..+.+.+.+.+.+.
T Consensus       162 Yi~~m-n~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q~L~  218 (279)
T TIGR00627       162 YIPLM-NCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQYLM  218 (279)
T ss_pred             HHHHH-HHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHHHHH
Confidence            33322 2222223345999999998655688999999999999999888776655443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins

Probab=97.26  E-value=0.0016  Score=71.40  Aligned_cols=103  Identities=20%  Similarity=0.334  Sum_probs=75.2

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCC-CeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG-DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST  405 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~-d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT  405 (613)
                      .+.+.|.|+||||.|.+++.+.. |..++..+..+ =+=.+|+|+++++...-     +..++.+-++.+. ....++.|
T Consensus       341 ~n~iav~DvSGSM~~~pm~vaia-Lgll~ae~~~~pf~~~~ITFs~~P~~~~i-----~g~~l~ekv~~~~-~~~wg~nT  413 (534)
T PF11443_consen  341 ENCIAVCDVSGSMSGPPMDVAIA-LGLLIAELNKGPFKGRFITFSENPQLHKI-----KGDTLREKVRFIR-RMDWGMNT  413 (534)
T ss_pred             cceEEEEecCCccCccHHHHHHH-HHHHHHHhcccccCCeEEeecCCceEEEe-----cCCCHHHHHHHHH-hCCcccCC
Confidence            68999999999999998887764 44455566432 22358999999876421     3336777888887 67788999


Q ss_pred             chHHHHHHHHHHHhcCC----CCccEEEEEecCCc
Q 007207          406 NICAPLTKAVEMLTNSR----GSIPIIFLVTDGAV  436 (613)
Q Consensus       406 ~l~~aL~~A~~~l~~~~----~~~~~IillTDG~~  436 (613)
                      |+...+...+.......    .-++.++++||=+.
T Consensus       414 n~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeF  448 (534)
T PF11443_consen  414 NFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEF  448 (534)
T ss_pred             cHHHHHHHHHHHHHHcCCChHHCCceEEEEecccc
Confidence            99999988887754332    23578999998654

>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.021  Score=54.23  Aligned_cols=141  Identities=16%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh-C--CCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhh
Q 007207          327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSK-L--DPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGI  397 (613)
Q Consensus       327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~-L--~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~  397 (613)
                      -..+++||.|--|..     +|+..-++++..+... +  +|...++|++..+ .++.+..++.  +...   .+..+. 
T Consensus         4 Eatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~--d~gk---ils~lh-   77 (259)
T KOG2884|consen    4 EATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTS--DRGK---ILSKLH-   77 (259)
T ss_pred             ceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccc--cchH---HHHHhc-
Confidence            347899999988873     4889999999887643 3  3678899999998 6777765544  3333   344444 


Q ss_pred             cCCCCCCcchHHHHHHHHHHHhcCCCCc--cEEEEEecCCc-CchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCH-HH
Q 007207          398 NFIAGGSTNICAPLTKAVEMLTNSRGSI--PIIFLVTDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNH-YF  473 (613)
Q Consensus       398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~~--~~IillTDG~~-~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~-~~  473 (613)
                      .+...|+.++..+|+.|.-.|+.+.+..  ..||++--... ..+.+.....++..+    .++.|-.|-||...+. +.
T Consensus        78 ~i~~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk----~~Vaidii~FGE~~~~~e~  153 (259)
T KOG2884|consen   78 GIQPHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKK----NKVAIDIINFGEAENNTEK  153 (259)
T ss_pred             CCCcCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHh----cCeeEEEEEeccccccHHH
Confidence            6788999999999999988887665432  34444443333 334444444444332    3377888888865443 44


Q ss_pred             HHHH
Q 007207          474 LRML  477 (613)
Q Consensus       474 L~~l  477 (613)
                      |...
T Consensus       154 l~~f  157 (259)
T KOG2884|consen  154 LFEF  157 (259)
T ss_pred             HHHH
Confidence            4433

>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway

Probab=97.20  E-value=0.0016  Score=64.36  Aligned_cols=107  Identities=21%  Similarity=0.349  Sum_probs=63.8

Q ss_pred             EEEEEeCCCCCCC------CcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee-------------eeccccccCHH
Q 007207          329 VIFIVDISGSMQG------KPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL-------------FSTSMELATKE  386 (613)
Q Consensus       329 vvfviD~SgSM~g------~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~-------------~~~~~~~~~~~  386 (613)
                      ++||||+|.||..      ..++.+.+++..++...   .+.|.+||+.|+++...             +.+. ...+.+
T Consensus         2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l-~~~~~~   80 (224)
T PF03731_consen    2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPL-DPPSAE   80 (224)
T ss_dssp             EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEEC-C--BHH
T ss_pred             EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecC-CccCHH
Confidence            7899999999983      25788888888877652   45799999999976432             1222 223555


Q ss_pred             HHHHHHHHHhh------cCCCCCCcchHHHHHHHHHHHhc--C--CCCccEEEEEecCCc
Q 007207          387 AVERAHQWIGI------NFIAGGSTNICAPLTKAVEMLTN--S--RGSIPIIFLVTDGAV  436 (613)
Q Consensus       387 ~~~~a~~~i~~------~~~~~GgT~l~~aL~~A~~~l~~--~--~~~~~~IillTDG~~  436 (613)
                      .+....+.+..      ........++..||..|..++..  .  .-..+.|+|+||+..
T Consensus        81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~  140 (224)
T PF03731_consen   81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDG  140 (224)
T ss_dssp             HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SS
T ss_pred             HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCC
Confidence            55555543331      11233456899999999999874  2  223578999999874

This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.

>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines

Probab=97.18  E-value=0.0067  Score=55.57  Aligned_cols=121  Identities=17%  Similarity=0.212  Sum_probs=83.7

Q ss_pred             CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcce---e---eecccc------ccCHHHHHHHHHHHhhcCCCCCCcchHH
Q 007207          342 KPLEDTKNALAVALSKLDPGDSFNIVAFNGETY---L---FSTSME------LATKEAVERAHQWIGINFIAGGSTNICA  409 (613)
Q Consensus       342 ~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~---~---~~~~~~------~~~~~~~~~a~~~i~~~~~~~GgT~l~~  409 (613)
                      ...++|..++..+|.....+.+|-+..|+....   .   .+++..      ...-+.+.++-...-......|-|++..
T Consensus        11 N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GPT~fap   90 (146)
T PF07002_consen   11 NPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGPTNFAP   90 (146)
T ss_pred             CHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCCccHHH
Confidence            467888999999999998888999999997632   1   122221      1122333333322223677789999999


Q ss_pred             HHHHHHHHHhc---CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEec
Q 007207          410 PLTKAVEMLTN---SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIG  466 (613)
Q Consensus       410 aL~~A~~~l~~---~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG  466 (613)
                      -|+.|.+....   ....--.++++|||..+|..+..+.+.++    ....+.|..||+|
T Consensus        91 iI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~A----S~~PlSIIiVGVG  146 (146)
T PF07002_consen   91 IINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEA----SKLPLSIIIVGVG  146 (146)
T ss_pred             HHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHH----ccCCeEEEEEEeC
Confidence            99999998763   22233478999999999988777766654    2345778888887

Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.14  Score=58.18  Aligned_cols=226  Identities=14%  Similarity=0.210  Sum_probs=130.2

Q ss_pred             CCCCceEEEEEeCCCC--CCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeee--------------------
Q 007207          323 KVFKKDVIFIVDISGS--MQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFS--------------------  377 (613)
Q Consensus       323 ~~~~~~vvfviD~SgS--M~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~--------------------  377 (613)
                      ...+-.++|+||+|-.  |.| -...+-++++.+|..+.   ++.+++|++|++..+.+.                    
T Consensus       414 ~p~ppafvFmIDVSy~Ai~~G-~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvf  492 (1007)
T KOG1984|consen  414 PPKPPAFVFMIDVSYNAISNG-AVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVF  492 (1007)
T ss_pred             CCCCceEEEEEEeehhhhhcc-hHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccc
Confidence            5577899999999843  333 35667788888888775   478999999998765421                    


Q ss_pred             -ccc----c--ccCHHHHHHHHHHHhhcCCCCCC--cchHHHHHHHHHHHhcCCCCccEEEEEe----------------
Q 007207          378 -TSM----E--LATKEAVERAHQWIGINFIAGGS--TNICAPLTKAVEMLTNSRGSIPIIFLVT----------------  432 (613)
Q Consensus       378 -~~~----~--~~~~~~~~~a~~~i~~~~~~~Gg--T~l~~aL~~A~~~l~~~~~~~~~IillT----------------  432 (613)
                       |+.    .  ..+..-++.+++.|...+...+-  |-++.+|+.|+..+.... ..+.+++.|                
T Consensus       493 vPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~-gGKl~vF~s~Lpt~g~g~kl~~r~D  571 (1007)
T KOG1984|consen  493 VPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD-GGKLFVFHSVLPTAGAGGKLSNRDD  571 (1007)
T ss_pred             cccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC-CceEEEEecccccccCcccccccch
Confidence             110    1  11345566777777643333343  457899999999887553 233333332                


Q ss_pred             ------cCCcC---chhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHH---HHHHHH
Q 007207          433 ------DGAVE---DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSI---EIQMQK  500 (613)
Q Consensus       433 ------DG~~~---~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l---~~~l~~  500 (613)
                            |++-+   ..+.....+...+-+.+ .++.+|..--+ .+|...|-.+...+||..+.-.....+   ...+..
T Consensus       572 ~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g-~svDlF~t~~a-yvDvAtlg~v~~~TgG~vy~Y~~F~a~~D~~rl~nD  649 (1007)
T KOG1984|consen  572 RRLIGTDKEKNLLQPQDKTYTTLAKEFVESG-CSVDLFLTPNA-YVDVATLGVVPALTGGQVYKYYPFQALTDGPRLLND  649 (1007)
T ss_pred             hhhhcccchhhccCcchhHHHHHHHHHHHhC-ceEEEEEcccc-eeeeeeecccccccCceeEEecchhhcccHHHHHHH
Confidence                  22110   00112223333332222 34555554222 246666777888999996665554333   344556


Q ss_pred             HHHHhccceeeeEEEEe--cCCCCceeec-------c--CCCCCCCCCCcEEEEEEEcCCCCC
Q 007207          501 LFTRGFSSVLANIAIDT--LKDLDEFEMY-------P--SRIPDLSSESPLIVSGRYQGKFPD  552 (613)
Q Consensus       501 ~~~~~~~p~l~~i~l~~--~~~~~~~~v~-------p--~~ip~l~~g~~~~v~g~~~~~~~~  552 (613)
                      +...+..+.--++-++.  ..++...+.+       +  ..++.|-....+.|--++.++..+
T Consensus       650 L~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~  712 (1007)
T KOG1984|consen  650 LVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQD  712 (1007)
T ss_pred             HHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEeccccccC
Confidence            66666666655544433  3333222221       2  256677778888888888776553

>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=97.08  E-value=0.044  Score=55.69  Aligned_cols=171  Identities=15%  Similarity=0.164  Sum_probs=102.3

Q ss_pred             ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcc-eeeecccc------c-------cC
Q 007207          327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGET-YLFSTSME------L-------AT  384 (613)
Q Consensus       327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~-~~~~~~~~------~-------~~  384 (613)
                      .-+++|||++..-.+     ..+..+-+++..|++.   +....++.||+.+... +.+.|...      .       .+
T Consensus         2 SLLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~   81 (276)
T PF03850_consen    2 SLLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSD   81 (276)
T ss_pred             cEEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccc
Confidence            347899999876553     2566777777777754   5678899999987764 33333322      0       00


Q ss_pred             ----------HHHHHHHHHHHhhcCC----CCCCcchHHHHHHHHHHHhcCC--------CCccEEEEEecCCcCchhHH
Q 007207          385 ----------KEAVERAHQWIGINFI----AGGSTNICAPLTKAVEMLTNSR--------GSIPIIFLVTDGAVEDERQI  442 (613)
Q Consensus       385 ----------~~~~~~a~~~i~~~~~----~~GgT~l~~aL~~A~~~l~~~~--------~~~~~IillTDG~~~~~~~~  442 (613)
                                .+.+.+.+..+.....    ....+.+..||..|+-.+++..        .-..+|+++.-+.++...+.
T Consensus        82 ~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QY  161 (276)
T PF03850_consen   82 SNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQY  161 (276)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHH
Confidence                      1111121111111111    1112788999999988776431        12235555234444444444


Q ss_pred             HHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHH
Q 007207          443 CDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQ  499 (613)
Q Consensus       443 ~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~  499 (613)
                      ...+.-... +.+.++.|-++-+|. .+..+|++.+..|||.|..+.+.+.+-+-+.
T Consensus       162 i~~MN~iFa-Aqk~~v~IDv~~L~~-~~s~fLqQa~d~T~G~y~~~~~~~~l~q~L~  216 (276)
T PF03850_consen  162 IPLMNCIFA-AQKQKVPIDVCKLGG-KDSTFLQQASDITGGIYLKVSKPEGLLQYLL  216 (276)
T ss_pred             HHHHHHHHH-HhcCCceeEEEEecC-CchHHHHHHHHHhCceeeccCccccHHHHHH
Confidence            444433322 234558899999988 4788999999999999999998776654433

The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=96.91  E-value=0.012  Score=58.43  Aligned_cols=172  Identities=12%  Similarity=0.158  Sum_probs=102.2

Q ss_pred             CCceEEEEEeCCCCCCCCcH-----HHHHHHHHHHHHh---CCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh
Q 007207          325 FKKDVIFIVDISGSMQGKPL-----EDTKNALAVALSK---LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG  396 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~-----~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~  396 (613)
                      .-+.+++++|+|.+|....+     ....+-+..|+-.   -+|-.+.+|+...+........+ ..+.+   .-+..+.
T Consensus        86 IiRhl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~-~gnpq---~hi~~lk  161 (421)
T COG5151          86 IIRHLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSM-DGNPQ---AHIGQLK  161 (421)
T ss_pred             hhheeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhc-CCCHH---HHHHHhh
Confidence            34789999999999986432     2222222223222   23456788887776543222211 12344   3444444


Q ss_pred             hcCCCCCCcchHHHHHHHHHHHhcCC-CCcc-EEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207          397 INFIAGGSTNICAPLTKAVEMLTNSR-GSIP-IIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL  474 (613)
Q Consensus       397 ~~~~~~GgT~l~~aL~~A~~~l~~~~-~~~~-~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L  474 (613)
                      +.....|.-.+..||+.|.-.+.... ...+ ++|++..=...|+.++.+.+...+.    .++|+..||+..  .-...
T Consensus       162 S~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~tid~Lv~----~~IrV~~igL~a--evaic  235 (421)
T COG5151         162 SKRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETIDKLVA----YNIRVHFIGLCA--EVAIC  235 (421)
T ss_pred             cccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHHHHHHh----hceEEEEEeehh--HHHHH
Confidence            33467888899999999955544332 2233 3444433333455566665555443    348999999865  45678


Q ss_pred             HHHHHhc----CcEEEEcCCCcHHHHHHHHHHHHhcccee
Q 007207          475 RMLAMIS----RGYYGAAYDLDSIEIQMQKLFTRGFSSVL  510 (613)
Q Consensus       475 ~~lA~~~----gG~~~~v~~~~~l~~~l~~~~~~~~~p~l  510 (613)
                      +.|..++    .|.|+..-|...+    ..++.++..|.-
T Consensus       236 KeickaTn~~~e~~y~v~vde~Hl----~el~~E~~~P~~  271 (421)
T COG5151         236 KEICKATNSSTEGRYYVPVDEGHL----SELMRELSHPTD  271 (421)
T ss_pred             HHHHhhcCcCcCceeEeeecHHHH----HHHHHhcCCCCC
Confidence            8998887    6888887776554    455666666653

>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.48  E-value=0.0085  Score=59.91  Aligned_cols=121  Identities=12%  Similarity=0.068  Sum_probs=74.6

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCcc
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTN  406 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~  406 (613)
                      ..++.++|+||||....++++..-+..++  -.++.+..++.-++.++.......          -+++...+..+|||+
T Consensus       262 ~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il--~~~~~eltli~~D~~v~~~~~~r~----------g~~~~~~~~ggG~Td  329 (396)
T COG3864         262 IKIVVAVDTSGSMTDAEIDAAMTEIFDIL--KNKNYELTLIECDNIVRRMYRVRK----------GRDMKKKLDGGGGTD  329 (396)
T ss_pred             hheEEEEecCCCccHHHHHHHHHHHHHHH--hCCCcEEEEEEecchhhhhhccCC----------cccCCcccCCCCCcc
Confidence            34889999999998766776666666666  235778888888887654332211          123333456677899


Q ss_pred             hHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          407 ICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       407 l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      +..++...-+..     .....|++|||.-..+..            ....+-++++.-|...+..|+..
T Consensus       330 f~Pvfeylek~~-----~~~~lIyfTDG~gd~p~~------------~r~~~~lwVl~~~~~e~e~f~~e  382 (396)
T COG3864         330 FSPVFEYLEKNR-----MECFLIYFTDGMGDQPLV------------FRPKVLLWVLTGAKGEVEKFKNE  382 (396)
T ss_pred             ccHHHHHHHhhc-----ccceEEEEccCCCCcccc------------cCCcceEEEecCCccchhccchH
Confidence            999877544332     125789999998543321            01124566665544445555443

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)

Probab=96.39  E-value=0.045  Score=61.87  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=72.4

Q ss_pred             CceEEEEEeCCCCCCC--------CcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcce----------eeeccccccC
Q 007207          326 KKDVIFIVDISGSMQG--------KPLEDTKNALAVALSKL---DPGDSFNIVAFNGETY----------LFSTSMELAT  384 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g--------~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~----------~~~~~~~~~~  384 (613)
                      .--|+|+||+|.||..        .++..+.+++..++.+.   .++|.+||+.||++..          .+.++. ..+
T Consensus        10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~-~p~   88 (584)
T TIGR00578        10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELD-NPG   88 (584)
T ss_pred             eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCC-CCC
Confidence            4568999999999984        36788888888888663   4789999999998632          133332 234


Q ss_pred             HHHHHHHHHHHhhcC------CCCCC--cchHHHHHHHHHHHhcCC--CCccEEEEEecCCc
Q 007207          385 KEAVERAHQWIGINF------IAGGS--TNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAV  436 (613)
Q Consensus       385 ~~~~~~a~~~i~~~~------~~~Gg--T~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~  436 (613)
                      .+.+.+..+.+....      ..+.+  ..+..+|..|.+++....  -..+.|+++||-..
T Consensus        89 a~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~  150 (584)
T TIGR00578        89 AKRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDN  150 (584)
T ss_pred             HHHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCC
Confidence            455444333222100      01111  378999999999997522  23578999999753

Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.

>KOG4465 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.026  Score=57.37  Aligned_cols=137  Identities=19%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             CCCCCCceEEEEEeCCCCCCCC----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHh
Q 007207          321 SRKVFKKDVIFIVDISGSMQGK----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIG  396 (613)
Q Consensus       321 ~~~~~~~~vvfviD~SgSM~g~----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~  396 (613)
                      ..++.++.+++.+|.|+||...    .+..-..|....+-.+......-.++|.+..... |++.   .-.+.+...+++
T Consensus       422 na~ptgkr~~laldvs~sm~~rv~~s~ln~reaaa~m~linlhnead~~~vaf~d~lte~-pftk---d~kigqv~~~~n  497 (598)
T KOG4465|consen  422 NAEPTGKRFCLALDVSASMNQRVLGSILNAREAAAAMCLINLHNEADSRCVAFCDELTEC-PFTK---DMKIGQVLDAMN  497 (598)
T ss_pred             cCCCCCceEEEEEecchhhhhhhhccccchHHHHhhhheeeeccccceeEEEeccccccC-CCcc---cccHHHHHHHHh
Confidence            3466789999999999999843    3332222222233345555567789999876542 3333   234455555554


Q ss_pred             hcCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207          397 INFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGS  467 (613)
Q Consensus       397 ~~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~  467 (613)
                       + -..|||+-+-++.+|-+.    .-...+.|++||.... ++-.....+++.....+-.+.++.+.++-.
T Consensus       498 -n-i~~g~tdcglpm~wa~en----nlk~dvfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amqa  563 (598)
T KOG4465|consen  498 -N-IDAGGTDCGLPMIWAQEN----NLKADVFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQA  563 (598)
T ss_pred             -c-CCCCCCccCCceeehhhc----CCCccEEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEeec
Confidence             3 356899998888877553    1234578899998764 333445566666555444446677776643

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=96.23  E-value=2.6  Score=47.74  Aligned_cols=175  Identities=17%  Similarity=0.241  Sum_probs=97.5

Q ss_pred             EEEecCCCCCCCCCCceEEEEEeCCC-CCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeecccc------
Q 007207          312 MYLLPGTAKSRKVFKKDVIFIVDISG-SMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSME------  381 (613)
Q Consensus       312 ~~~~P~~~~~~~~~~~~vvfviD~Sg-SM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~------  381 (613)
                      =++.|+.-....+.|..+||+||+|- ||...-...+-+++...++.++   +..+++++.|++..+.+.....      
T Consensus       262 df~ap~~Y~~~~p~P~~yvFlIDVS~~a~~~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~  341 (861)
T COG5028         262 DFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQML  341 (861)
T ss_pred             EEecccceeeccCCCCEEEEEEEeehHhhhcchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCcccee
Confidence            36778776556677999999999993 3433345555666666665553   5789999999997654321100      


Q ss_pred             ----------ccC-----------HHHHHHHHHHHhhcCCCCCC--cchHHHHHHHHHHHhcCCCCccEEEEEec-----
Q 007207          382 ----------LAT-----------KEAVERAHQWIGINFIAGGS--TNICAPLTKAVEMLTNSRGSIPIIFLVTD-----  433 (613)
Q Consensus       382 ----------~~~-----------~~~~~~a~~~i~~~~~~~Gg--T~l~~aL~~A~~~l~~~~~~~~~IillTD-----  433 (613)
                                +..           ...++..++.+.......+.  -.++.||+.|..++....+  +.|++++-     
T Consensus       342 ~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~~GG--kii~~~stlPn~G  419 (861)
T COG5028         342 IVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGG--KIIVFLSTLPNMG  419 (861)
T ss_pred             eecccccccccCCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhccCc--eEEEEeecCCCcc
Confidence                      000           11222344444422233333  3579999999988765443  35555532     


Q ss_pred             -CCcC----c-------hhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCC
Q 007207          434 -GAVE----D-------ERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYD  490 (613)
Q Consensus       434 -G~~~----~-------~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~  490 (613)
                       |...    +       .....+.+...+.+.+ +.+.+|...-+ ..+...|..+++.++|..++-..
T Consensus       420 ~Gkl~~r~d~e~~ll~c~d~fYk~~a~e~~k~g-Isvd~Flt~~~-yidvaTls~l~~~T~G~~~~Yp~  486 (861)
T COG5028         420 IGKLQLREDKESSLLSCKDSFYKEFAIECSKVG-ISVDLFLTSED-YIDVATLSHLCRYTGGQTYFYPN  486 (861)
T ss_pred             cccccccccchhhhccccchHHHHHHHHHHHhc-ceEEEEecccc-ccchhhhcchhhccCcceEEcCC
Confidence             3322    1       1111222333332222 23344443222 34667889999999998655433

>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.19  Score=46.74  Aligned_cols=141  Identities=19%  Similarity=0.232  Sum_probs=92.2

Q ss_pred             ceEEEEEeCCCCCC-C----CcHHHHHHHHHHHHHh-C--CCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhh
Q 007207          327 KDVIFIVDISGSMQ-G----KPLEDTKNALAVALSK-L--DPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGI  397 (613)
Q Consensus       327 ~~vvfviD~SgSM~-g----~~~~~ak~al~~~l~~-L--~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~  397 (613)
                      -..+++||.|--|. |    +|++.-|+++..++.. .  .+...++++.-... ...+...+.  .   .-..+.++. 
T Consensus         4 EatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~--~---~gkilt~lh-   77 (243)
T COG5148           4 EATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTK--Q---RGKILTFLH-   77 (243)
T ss_pred             ceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchh--h---hhHHHHHhc-
Confidence            45789999986665 3    4889999999988854 3  35678999988764 334433322  2   233445554 


Q ss_pred             cCCCCCCcchHHHHHHHHHHHhcCCCC--cc-EEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207          398 NFIAGGSTNICAPLTKAVEMLTNSRGS--IP-IIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL  474 (613)
Q Consensus       398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~--~~-~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L  474 (613)
                      .+...|+.++..+|+.|.-.++.+.+.  +. .|.++..-...++++.+..+++..++    ++-|-.|-+|...|...|
T Consensus        78 d~~~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkkn----nVAidii~fGE~~n~~~l  153 (243)
T COG5148          78 DIRLHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKN----NVAIDIIFFGEAANMAGL  153 (243)
T ss_pred             cccccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhc----CeeEEEEehhhhhhhhHH
Confidence            677899999999999998888765433  23 34444333335566667666665433    377888888876666554


Q ss_pred             HHH
Q 007207          475 RML  477 (613)
Q Consensus       475 ~~l  477 (613)
                      ...
T Consensus       154 ~ef  156 (243)
T COG5148         154 FEF  156 (243)
T ss_pred             HHH
Confidence            443

>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]

Probab=95.80  E-value=0.97  Score=43.40  Aligned_cols=150  Identities=14%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHh---CCCCCeEEEEE-eCCcceeeeccccc---------------------cCHHHHHHHHHHHhhc
Q 007207          344 LEDTKNALAVALSK---LDPGDSFNIVA-FNGETYLFSTSMEL---------------------ATKEAVERAHQWIGIN  398 (613)
Q Consensus       344 ~~~ak~al~~~l~~---L~~~d~~~Ii~-F~~~~~~~~~~~~~---------------------~~~~~~~~a~~~i~~~  398 (613)
                      .....+.+.-||+.   ...+.|+++++ |+...+.+.|....                     .+...+.+....+...
T Consensus        43 ~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~  122 (296)
T COG5242          43 RDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHP  122 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCc
Confidence            44555555556643   34678888875 44444444443221                     1222334444444322


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCC---ccEEEEEec-CCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNSRGS---IPIIFLVTD-GAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL  474 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~~~~---~~~IillTD-G~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L  474 (613)
                      -...-.+.++.|+..++.........   ...|+++|= |...- .+.+..+.-.. .+.+.+++|.++.|+.+  ..+|
T Consensus       123 ~k~sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~d~~-~qYip~mnCiF-~Aqk~~ipI~v~~i~g~--s~fl  198 (296)
T COG5242         123 HKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGRDRK-DQYIPYMNCIF-AAQKFGIPISVFSIFGN--SKFL  198 (296)
T ss_pred             ccccceeehhhhhhhhHHHHhhhcccccccceEEEEEecCchhh-hhhchhhhhee-ehhhcCCceEEEEecCc--cHHH
Confidence            22334588899999988877654332   235556665 63211 11222221111 12234578888888763  6799


Q ss_pred             HHHHHhcCcEEEEcCCCcHHHHH
Q 007207          475 RMLAMISRGYYGAAYDLDSIEIQ  497 (613)
Q Consensus       475 ~~lA~~~gG~~~~v~~~~~l~~~  497 (613)
                      .+-+.++||.|..+.+.+.+-+-
T Consensus       199 ~Q~~daTgG~Yl~ve~~eGllqy  221 (296)
T COG5242         199 LQCCDATGGDYLTVEDTEGLLQY  221 (296)
T ss_pred             HHHhhccCCeeEeecCchhHHHH
Confidence            99999999999999998866443

>COG2718 Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.11  Score=53.75  Aligned_cols=162  Identities=17%  Similarity=0.163  Sum_probs=89.2

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCCc
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGST  405 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT  405 (613)
                      .-++-++|+||||....-+.||.....+---|. .-.++-|+.-.+....+     ..+...      +.  ...-.|||
T Consensus       247 AVmfclMDvSGSM~~~~KdlAkrFF~lL~~FL~~kYenveivfIrHht~A~-----EVdE~d------FF--~~~esGGT  313 (423)
T COG2718         247 AVMFCLMDVSGSMDQSEKDLAKRFFFLLYLFLRRKYENVEIVFIRHHTEAK-----EVDETD------FF--YSQESGGT  313 (423)
T ss_pred             eEEEEEEecCCCcchHHHHHHHHHHHHHHHHHhcccceeEEEEEeecCcce-----ecchhh------ce--eecCCCCe
Confidence            334456899999988777777775443322233 24456666555544322     112221      11  23457999


Q ss_pred             chHHHHHHHHHHHhcC-C--CCccEEEEEecCCcC--chhHHHHHHHHHHHcCCCCCceEEEEE-ecCCCCHHHH--HHH
Q 007207          406 NICAPLTKAVEMLTNS-R--GSIPIIFLVTDGAVE--DERQICDAMKSRLTNGGSICPRIYTFG-IGSYCNHYFL--RML  477 (613)
Q Consensus       406 ~l~~aL~~A~~~l~~~-~--~~~~~IillTDG~~~--~~~~~~~~~~~~~~~~~~~~~~i~tig-iG~~~~~~~L--~~l  477 (613)
                      -+..||+.+.+.+... +  .-+...+-.+||..+  |...+...+.+.+-..    +..|+.+ |-....+..|  +.+
T Consensus       314 ivSSAl~~m~evi~ErYp~aeWNIY~fqaSDGDN~~dDserc~~ll~~~im~~----~~~y~Y~Eitq~~~H~t~~y~~~  389 (423)
T COG2718         314 IVSSALKLMLEVIKERYPPAEWNIYAFQASDGDNWADDSERCVELLAKKLMPV----VQYYGYIEITQRRTHQTLEYEAL  389 (423)
T ss_pred             EeHHHHHHHHHHHHhhCChhheeeeeeeecCCccccCCCHHHHHHHHHHHHHh----hhheEEEeeeecccchhhhhhhh
Confidence            9999999999999763 1  224577889999974  3344444444232211    2233332 1111122222  111


Q ss_pred             HHhc-CcEEEEcCCCcHHHHHHHHHHHHh
Q 007207          478 AMIS-RGYYGAAYDLDSIEIQMQKLFTRG  505 (613)
Q Consensus       478 A~~~-gG~~~~v~~~~~l~~~l~~~~~~~  505 (613)
                      -... +=....+.+.+++-.+|.++|.+-
T Consensus       390 ~~~~dnFa~~~I~~~~Diypvfr~lf~ke  418 (423)
T COG2718         390 QGVFDNFAMQTIREPDDIYPVFRELFSKE  418 (423)
T ss_pred             hccCcchheeeecCHHHHHHHHHHHHhcc
Confidence            1111 122456778888888888888653

>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]

Probab=95.25  E-value=0.38  Score=52.11  Aligned_cols=187  Identities=16%  Similarity=0.194  Sum_probs=96.0

Q ss_pred             ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHH---HHHHHHHhCCCCCeEEEEEeCCccee-ee------
Q 007207          308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKN---ALAVALSKLDPGDSFNIVAFNGETYL-FS------  377 (613)
Q Consensus       308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~---al~~~l~~L~~~d~~~Ii~F~~~~~~-~~------  377 (613)
                      -.|-+.+.|.     +..|.|+++|+|.|+||.. .++..|.   .+..-++.+..+-|+++-+|-+.... +.      
T Consensus        89 ~~f~v~~~~a-----~~yPvDLYyLmDlS~Sm~d-dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~  162 (426)
T PF00362_consen   89 VTFNVTVRPA-----EDYPVDLYYLMDLSYSMKD-DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEK  162 (426)
T ss_dssp             EEEEEEEEBS-----SS--EEEEEEEE-SGGGHH-HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHC
T ss_pred             EEEEEEEeec-----cccceeEEEEeechhhhhh-hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhh
Confidence            3466666655     3479999999999999975 4555553   33444556677889999998776321 00      


Q ss_pred             ---cc-----------------ccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHH---HHHhcCCCCccEEEE
Q 007207          378 ---TS-----------------MELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAV---EMLTNSRGSIPIIFL  430 (613)
Q Consensus       378 ---~~-----------------~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~---~~l~~~~~~~~~Iil  430 (613)
                         |.                 ....+.....++++    .....|+-+-    ..||-.|.   +.+.=+.+.++.+|+
T Consensus       163 l~~pc~~~~~~c~~~~~f~~~l~Lt~~~~~F~~~v~----~~~is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~  238 (426)
T PF00362_consen  163 LKNPCPSKNPNCQPPFSFRHVLSLTDDITEFNEEVN----KQKISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVF  238 (426)
T ss_dssp             HHSTSCCTTS--B---SEEEEEEEES-HHHHHHHHH----TS--B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEE
T ss_pred             hcCcccccCCCCCCCeeeEEeecccchHHHHHHhhh----hccccCCCCCCccccchheeeeecccccCcccCceEEEEE
Confidence               00                 00113334444443    2333332221    22333332   223224456789999


Q ss_pred             EecCCcC---ch----------------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207          431 VTDGAVE---DE----------------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM  479 (613)
Q Consensus       431 lTDG~~~---~~----------------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~  479 (613)
                      .||+...   |+                            -.....+.+.+.+.+  -..||+|  ... -....+.|+.
T Consensus       239 ~TD~~fH~agDg~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~--i~~IFAV--t~~-~~~~Y~~L~~  313 (426)
T PF00362_consen  239 STDAGFHFAGDGKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENN--INPIFAV--TKD-VYSIYEELSN  313 (426)
T ss_dssp             EESS-B--TTGGGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTT--EEEEEEE--EGG-GHHHHHHHHH
T ss_pred             EcCCccccccccccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcC--CEEEEEE--chh-hhhHHHHHhh
Confidence            9998642   00                            012344555554432  1346665  332 3346677777


Q ss_pred             hcCcEEEE-c-CCCcHHHHHHHHHHHHhccce
Q 007207          480 ISRGYYGA-A-YDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       480 ~~gG~~~~-v-~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      .-.|...- . .|.+.+.+.+...+.++.+.+
T Consensus       314 ~i~~s~vg~L~~dSsNIv~LI~~aY~~i~s~V  345 (426)
T PF00362_consen  314 LIPGSSVGELSSDSSNIVQLIKEAYNKISSKV  345 (426)
T ss_dssp             HSTTEEEEEESTTSHTHHHHHHHHHHHHCTEE
T ss_pred             cCCCceecccccCchhHHHHHHHHHHHHhheE
Confidence            66665543 3 334568888888888887654

The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....

>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells

Probab=94.81  E-value=0.26  Score=48.16  Aligned_cols=112  Identities=15%  Similarity=0.283  Sum_probs=65.5

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHH-HHHHHHHhCC-------------CCCeEEEEEeCCcceeeeccc-cccCHHH
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKN-ALAVALSKLD-------------PGDSFNIVAFNGETYLFSTSM-ELATKEA  387 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~-al~~~l~~L~-------------~~d~~~Ii~F~~~~~~~~~~~-~~~~~~~  387 (613)
                      +...+++|||||.+..|.. -|...|. -+.-+++.+.             ....++||.|++..-.-.+.. ...-..+
T Consensus        10 ~~~~~~vVfvvEgTAalgp-y~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~   88 (226)
T PF11265_consen   10 QPPQAQVVFVVEGTAALGP-YWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSS   88 (226)
T ss_pred             cCccceEEEEEecchhhhh-hHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCC
Confidence            4567999999999999974 3444443 2333343332             235689999998632110000 0011123


Q ss_pred             HHHHHHHHhhcCC-CCCC----cchHHHHHHHHHHHhcCC---------CCccEEEEEecCCc
Q 007207          388 VERAHQWIGINFI-AGGS----TNICAPLTKAVEMLTNSR---------GSIPIIFLVTDGAV  436 (613)
Q Consensus       388 ~~~a~~~i~~~~~-~~Gg----T~l~~aL~~A~~~l~~~~---------~~~~~IillTDG~~  436 (613)
                      ....++||+ .+. .+||    +.+.+||..|++++....         ...+..||++--.+
T Consensus        89 ~~~fl~~L~-~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP  150 (226)
T PF11265_consen   89 PQKFLQWLD-AIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPP  150 (226)
T ss_pred             HHHHHHHHH-ccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCC
Confidence            445556665 333 3333    348899999999886311         12578899987765

Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].

>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]

Probab=94.57  E-value=0.28  Score=53.30  Aligned_cols=105  Identities=21%  Similarity=0.292  Sum_probs=69.8

Q ss_pred             CCceEEEEEeCCCCCCC-----CcHHHHHHHHHHHH-HhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc
Q 007207          325 FKKDVIFIVDISGSMQG-----KPLEDTKNALAVAL-SKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN  398 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g-----~~~~~ak~al~~~l-~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~  398 (613)
                      ...++++++|+|.||..     .+++.+..++..+. ..+..+|++++..|+.....+.+...  ..+.+...++.+. .
T Consensus       223 r~~~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~gd~vg~~~~~~~~~~~~~p~~--G~~~l~~~l~~l~-~  299 (416)
T COG1721         223 RGRTVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKNGDRVGLLIFGGGGPKWIPPSR--GRRHLARILKALA-L  299 (416)
T ss_pred             cCceEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhCCCeeEEEEECCCcceeeCCCc--chHHHHHHHHHhh-c
Confidence            47899999999999993     57888877776654 45678999999999987655554433  6667777777765 4


Q ss_pred             CCCCCC-cchHHHHHHHHHHHhcCCCCccEEEEEecCCc
Q 007207          399 FIAGGS-TNICAPLTKAVEMLTNSRGSIPIIFLVTDGAV  436 (613)
Q Consensus       399 ~~~~Gg-T~l~~aL~~A~~~l~~~~~~~~~IillTDG~~  436 (613)
                      ....+. |+...+... ...+   ....+.++++||=..
T Consensus       300 ~~~~~~~~~~~~~~~~-~~~l---~~~~~~~~~~~~l~~  334 (416)
T COG1721         300 LRPAPEETDYIRRVSK-LDFL---PPRRPLVILITDLAR  334 (416)
T ss_pred             cCCCCcchhHHHHhhh-hhcc---CcccceEEEeehhhc
Confidence            444443 444444322 1221   223457788887654

>PF14415 DUF4424: Domain of unknown function (DUF4424)

Probab=94.38  E-value=0.38  Score=48.23  Aligned_cols=50  Identities=20%  Similarity=0.272  Sum_probs=41.8

Q ss_pred             EEEEEEEEEecccCCCceeeEEEEeecCC--------Cc----------eEEEEEEEECCEEEEEEEeecc
Q 007207          103 FVRVSGTWRVHCVMGSKSCDCRIAVPMGD--------QG----------SILGVEAEISGKSYHTQLIALG  155 (613)
Q Consensus       103 ~v~v~~~f~n~~~~~~~~~e~~y~FPL~~--------~a----------~V~~f~~~i~~r~i~g~v~ek~  155 (613)
                      +|+|..+|.|   +++++++....||||+        .+          .|.+|.+.||||.+..++..+.
T Consensus         2 ~I~V~Y~F~N---~t~~dv~~~VaFPlP~i~~~~~~d~~~~~p~~~~~n~i~~Fk~~VdGk~v~~q~~~ra   69 (253)
T PF14415_consen    2 RIRVRYVFRN---PTDQDVTVTVAFPLPDISGSPENDFAIAIPDNDSDNFIKDFKTTVDGKPVKPQVHQRA   69 (253)
T ss_pred             EEEEEEEEeC---CCCCcEEEEEEEeCCCCCCCccccccccccccCCcCccceEEEEECCEEcCceeEEEE
Confidence            5789999999   7899999999999993        12          4667999999999999885544

>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.75  E-value=7.6  Score=43.71  Aligned_cols=175  Identities=16%  Similarity=0.219  Sum_probs=101.8

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceee------------eccccccCHHH-----
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLF------------STSMELATKEA-----  387 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~------------~~~~~~~~~~~-----  387 (613)
                      .|--++||||+-  |..+.++.+|+++...++.|+++..+++|+|+..+++.            +......+.+.     
T Consensus       120 ~ppvf~fVvDtc--~~eeeL~~LkssL~~~l~lLP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~~~L  197 (745)
T KOG1986|consen  120 SPPVFVFVVDTC--MDEEELQALKSSLKQSLSLLPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLLDLL  197 (745)
T ss_pred             CCceEEEEEeec--cChHHHHHHHHHHHHHHhhCCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHHHHh
Confidence            466789999975  55578999999999999999999999999999876542            11111122222     


Q ss_pred             -----------------------------HHHHHHHHhhcC--CCCCCc---chHHHHHHHHHHHhc-CCCCccEEEEEe
Q 007207          388 -----------------------------VERAHQWIGINF--IAGGST---NICAPLTKAVEMLTN-SRGSIPIIFLVT  432 (613)
Q Consensus       388 -----------------------------~~~a~~~i~~~~--~~~GgT---~l~~aL~~A~~~l~~-~~~~~~~IillT  432 (613)
                                                   +.+.++.|....  .+.|.-   -.+.||..|..++.. .++....|++++
T Consensus       198 ~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~  277 (745)
T KOG1986|consen  198 GLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGCFPNTGARIVLFA  277 (745)
T ss_pred             cCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhcccCCCCcceEEEec
Confidence                                         222222222100  011211   235566666666543 234456788888


Q ss_pred             cCCcCc-----------------------h----h---HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcC
Q 007207          433 DGAVED-----------------------E----R---QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISR  482 (613)
Q Consensus       433 DG~~~~-----------------------~----~---~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~g  482 (613)
                      -|--+.                       .    .   ...+.+.+.+.+.+ .-+.||+-++-. +.-..|+.+++.+|
T Consensus       278 gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~g-hvlDifa~~lDQ-vGi~EMk~l~~~TG  355 (745)
T KOG1986|consen  278 GGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQG-HVLDIFAAALDQ-VGILEMKPLVESTG  355 (745)
T ss_pred             cCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCC-ceEeeeeeeccc-cchHHHHHHhhcCC
Confidence            884210                       0    0   11122333333222 335666665533 35567999999999


Q ss_pred             cEEEEcCCCc--HHHHHHHHHHH
Q 007207          483 GYYGAAYDLD--SIEIQMQKLFT  503 (613)
Q Consensus       483 G~~~~v~~~~--~l~~~l~~~~~  503 (613)
                      |....-.+.+  -....+++++.
T Consensus       356 G~lvl~dsF~~s~Fk~sfqR~f~  378 (745)
T KOG1986|consen  356 GVLVLGDSFNTSIFKQSFQRIFT  378 (745)
T ss_pred             cEEEEecccchHHHHHHHHHHhc
Confidence            9988766654  33455555554

>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair]

Probab=91.02  E-value=11  Score=37.64  Aligned_cols=168  Identities=15%  Similarity=0.132  Sum_probs=91.2

Q ss_pred             CCceEEEEEeCCC---CCC----C-CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce-eeecc-------------
Q 007207          325 FKKDVIFIVDISG---SMQ----G-KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY-LFSTS-------------  379 (613)
Q Consensus       325 ~~~~vvfviD~Sg---SM~----g-~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~-~~~~~-------------  379 (613)
                      .+.-++++||.+.   -|.    + ..+....+++..|++.   ...+.++.|++..++.. .+.|.             
T Consensus        22 ~~slL~vlId~~p~~Wg~~as~~~~~ti~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~  101 (314)
T KOG2487|consen   22 NPSLLVVLIDANPCSWGMLASAENWETISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD  101 (314)
T ss_pred             CceeEEEEEecCcchhhhhhhhcCceeHHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence            4667889999987   222    1 2456666677666653   34688999999865532 11110             


Q ss_pred             -c----------cccCHHHHHHHHHHHhhcCC-C-CCCcchHHHHHHHHHHHhcC---C---CCccEEEEEecCCcCchh
Q 007207          380 -M----------ELATKEAVERAHQWIGINFI-A-GGSTNICAPLTKAVEMLTNS---R---GSIPIIFLVTDGAVEDER  440 (613)
Q Consensus       380 -~----------~~~~~~~~~~a~~~i~~~~~-~-~GgT~l~~aL~~A~~~l~~~---~---~~~~~IillTDG~~~~~~  440 (613)
                       +          ...+..-+.+....+..... . +..|-+..|+..++......   .   .-..+|+++|=+.....+
T Consensus       102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q  181 (314)
T KOG2487|consen  102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ  181 (314)
T ss_pred             chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence             0          00111111222222211101 1 11455556665555443221   1   113467888876543221


Q ss_pred             HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHHHH
Q 007207          441 QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEI  496 (613)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l~~  496 (613)
                       ....+.-... +.+.+++|.++.+|++  ..+|++-+..|||.|..+...+.+-+
T Consensus       182 -yi~~MNciFa-AqKq~I~Idv~~l~~~--s~~LqQa~D~TGG~YL~v~~~~gLLq  233 (314)
T KOG2487|consen  182 -YIPYMNCIFA-AQKQNIPIDVVSLGGD--SGFLQQACDITGGDYLHVEKPDGLLQ  233 (314)
T ss_pred             -hhhHHHHHHH-HHhcCceeEEEEecCC--chHHHHHHhhcCCeeEecCCcchHHH
Confidence             1222211111 1234588999999875  67999999999999999998876543

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=87.08  E-value=8.7  Score=47.93  Aligned_cols=173  Identities=14%  Similarity=0.177  Sum_probs=100.4

Q ss_pred             ceEEEEEeCCCCCCCCc-HHHHHHHH---HHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          327 KDVIFIVDISGSMQGKP-LEDTKNAL---AVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~-~~~ak~al---~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      -.|++-||-|.||+..+ -..|.+.+   ...|..|. -..++|+-|+...+.+.|+-.+.+.+.-.++..|..   --.
T Consensus      4393 yqvmisiddsksmses~~~~la~etl~lvtkals~le-~g~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f~---feq 4468 (4600)
T COG5271        4393 YQVMISIDDSKSMSESGSTVLALETLALVTKALSLLE-VGQIAVMKFGEQPELLHPFDKQFSSESGVQMFSHFT---FEQ 4468 (4600)
T ss_pred             eEEEEEecccccccccCceeeehHHHHHHHHHHHHHh-hccEEEEecCCChhhhCchhhhhcchHHHHHHHhhc---hhc
Confidence            46888999999998642 11222222   22333343 457899999999998888777777776666776653   223


Q ss_pred             CCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH--
Q 007207          403 GSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR--  475 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~--  475 (613)
                      ..||..+-....++.+...     .+....=|+++||.-.+-+.+...++++..+.   -.-+|+|-=|-..+...|.  
T Consensus      4469 s~tnv~~l~~~s~k~f~~a~t~~h~d~~qleiiisdgicedhdsi~kllrra~e~k---vmivfvild~v~t~~sildi~ 4545 (4600)
T COG5271        4469 SNTNVLALADASMKCFNYANTASHHDIRQLEIIISDGICEDHDSIRKLLRRAQEEK---VMIVFVILDNVNTQKSILDIK 4545 (4600)
T ss_pred             ccccHHHHHHHHHHHHHHhhhhcccchheeEEEeecCcccchHHHHHHHHHhhhcc---eEEEEEEecCCccchhhhhhH
Confidence            5677655444444444321     12244668999999888777777776654321   1234554323222232222  


Q ss_pred             ------------------HHHHhcCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          476 ------------------MLAMISRGYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       476 ------------------~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                                        .|-+..-..|..+.+-+++++.+...+++-.
T Consensus      4546 kv~y~~~e~g~~~lki~~yid~f~fd~ylvv~ni~elpqlls~~lrq~f 4594 (4600)
T COG5271        4546 KVYYDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWF 4594 (4600)
T ss_pred             hhccccccCCCcceeeeechhcccceeEEEeccHHHHHHHHHHHHHHHH
Confidence                              1111222345666777777776665555443

>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]

Probab=80.48  E-value=5  Score=45.63  Aligned_cols=60  Identities=23%  Similarity=0.366  Sum_probs=40.1

Q ss_pred             cceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHH---HHHHHHHHhCCCCCeEEEEEeCCc
Q 007207          307 REMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTK---NALAVALSKLDPGDSFNIVAFNGE  372 (613)
Q Consensus       307 ~~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak---~al~~~l~~L~~~d~~~Ii~F~~~  372 (613)
                      ...|.+.+.+..     .-|.|+++|+|.|-||..+ ++..+   ..|..-++.|..+-|++.-.|=+.
T Consensus       118 ~~~f~l~~r~a~-----~yPVDLYyLMDlS~SM~DD-l~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK  180 (783)
T KOG1226|consen  118 EQTFQLKVRQAE-----DYPVDLYYLMDLSYSMKDD-LENLKSLGTDLAREMRKLTSNFRLGFGSFVDK  180 (783)
T ss_pred             ceeEEEEEeecc-----CCCeeEEEEeecchhhhhh-HHHHHHHHHHHHHHHHHHhccCCccccchhcc
Confidence            345666665543     3689999999999999863 44444   444445556666777776666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	613
4fx5_A	464	VON willebrand factor type A; structural genomics,	2e-45
2x31_A	189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	8e-17
1shu_X	182	Anthrax toxin receptor 2; alpha/beta rossmann fold	1e-13
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	9e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2xgg_A	178	Microneme protein 2; A/I domain, cell adhesion, hy	1e-07
2nvo_A	535	RO sixty-related protein, RSR; alpha helical repea	2e-07
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	5e-07
1q0p_A	223	Complement factor B; VON willebrand factor, MAC-1,	6e-07
1pt6_A	213	Integrin alpha-1; cell adhesion; 1.87A {Homo sapie	1e-06
2b2x_A	223	Integrin alpha-1; computational design, antibody-a	2e-06
1v7p_C	200	Integrin alpha-2; snake venom, C-type lectin, anta	4e-06
1mf7_A	194	Integrin alpha M; cell adhesion; 1.25A {Homo sapie	5e-06
3zqk_A	199	VON willebrand factor; blood clotting, adamts-13,	8e-06
1atz_A	189	VON willebrand factor; collagen-binding, hemostasi	8e-06
1n3y_A	198	Integrin alpha-X; alpha/beta rossmann fold, cell a	1e-05
3n2n_F	185	Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho	5e-05
1ijb_A	202	VON willebrand factor; dinucleotide-binding fold,	9e-05
1yvr_A	538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	1e-04
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	6e-04

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Length = 464

 Score =  166 bits (421), Expect = 2e-45
 Identities = 47/233 (20%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 327 KDVIFIVDISGSMQ--GKPLEDTKNALAVALSKLDPGDSFNIVAFNGET---YLFSTSME 381
              + I+D SGSM      +   K A  VA+  L  G  F +VA        Y     + 
Sbjct: 78  NVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLL 137

Query: 382 LATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQ 441
            A  ++   A + +G    A G T +   L +A  +   +  +I    L+TDG  E E  
Sbjct: 138 RADYQSRAAAKEAVG-RLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETP 196

Query: 442 ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKL 501
              A   + + G          GIG       LR +A    G  G   D  ++    +++
Sbjct: 197 ADLARAIQSSIGNF---TADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDFREM 253

Query: 502 FTRGFSSVLANIAID-------TLKDLDEFEMYPSRIPDLSSESPLIVSGRYQ 547
             +     +A++A+        T++ + +     + +  +       ++G Y 
Sbjct: 254 TAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYP 306

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Length = 189

 Score = 78.0 bits (192), Expect = 8e-17
 Identities = 34/177 (19%), Positives = 61/177 (34%), Gaps = 17/177 (9%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGETYLFSTSMELATKE 386
            +IF VD SGS     L + K A+ + L +     D  +++ F G     +  + L    
Sbjct: 7   VLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGT----AAQVLLQPSR 62

Query: 387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQICD 444
           ++ +  + +      GG T + + +  A+     +R  G  P I L+TDG          
Sbjct: 63  SLTQTKRQLQ-GLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTA 121

Query: 445 AMKSRLTNGGSICPRIYTFGIGSYC------NHYFLRMLAMISRGYYGAAYDLDSIE 495
             +        +   I   G+ +         +  L  LA     +Y     L    
Sbjct: 122 NRELAGEQATKVARAIRASGMPAVIIDTAMRPNPALVDLARTMDAHY---IALPRAT 175

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Length = 182

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 26/178 (14%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELAT-K 385
           D+ F++D SGS+      +  N +     +   P    + + F+ +       + L   +
Sbjct: 8   DLYFVLDKSGSVANNW-IEIYNFVQQLAERFVSPEMRLSFIVFSSQAT---IILPLTGDR 63

Query: 386 EAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP--IIFLVTDGAVEDERQIC 443
             + +  + +       G T I   L  A E +  + G     II  +TDG ++      
Sbjct: 64  GKISKGLEDLKRVS-PVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSY 122

Query: 444 DAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKL 501
              +++++        +Y  G+  +     L  +A      +       +++  +  +
Sbjct: 123 AEKEAKISRSLGA--SVYCVGVLDF-EQAQLERIADSKEQVFPVKGGFQALKGIINSI 177

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Length = 218

 Score = 66.9 bits (164), Expect = 9e-13
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 19/159 (11%)

Query: 318 TAKSRKVFKK--DVIFIVDISGSMQG---KP--LEDTKNALAVALSKLDPGDSFNIVAFN 370
           +  S  V +K  +VI  +DIS SM     +P  LE  K  ++  + +L   D   ++ F 
Sbjct: 1   SNASNAVKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL-DNDKVGMIVFA 59

Query: 371 GETYLFS--TSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPII 428
           G+ +     TS       + +   + I  + I+   T I   +  A    T   G    I
Sbjct: 60  GDAFTQLPITS----DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAI 115

Query: 429 FLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS 467
            ++TDG  E+               G I  ++   G+G 
Sbjct: 116 IVITDG--ENHEGGAVEAAKAAAEKG-I--QVSVLGVGM 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 108/674 (16%), Positives = 196/674 (29%), Gaps = 202/674 (29%)

Query: 3   DDF-VKAVEDGLK--LSKRLYFGKDRPVTPPKVPSSMDKSGAVDMLLPKSPMVYAVITDP 59
           D+F  K V+D  K  LSK      D  +      S   +      LL K   +     + 
Sbjct: 31  DNFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEE 85

Query: 60  KIVDNPDIPSYQPYVHGRCDPPSLIPL----QMNAVELDVDCYLDTAFVRVSGTWRVHCV 115
             V   +       +      PS++      Q + +  D   +     V      R+   
Sbjct: 86  --VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NV-----SRLQPY 137

Query: 116 MGSKSCDCRIAVPMGDQGSILGVEAEISGKSYHTQLIALGENDGAGKS---ASV----ET 168
           +  +     +          + ++    G              G+GK+     V    + 
Sbjct: 138 LKLRQALLEL-----RPAKNVLID----GVL------------GSGKTWVALDVCLSYKV 176

Query: 169 GSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYR-------DGEFSVNVPFKFPEYVTP 221
              +   IF L L   +    +   L   QKL Y+         + S N+  +    +  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRI-HSIQA 232

Query: 222 AIKKIPKREK------IHLNV-NAGT------GTEVLCNT---------SSHHLKQLRRD 259
            ++++ K +       + LNV NA          ++L  T         S+     +  D
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 260 VGKLGYSYESEVL----KWSNIDFDF----SYTVSPSHI--FGGVLLQSPSLHD------ 303
              +  +   EV     K+ +           T +P  +      +    +  D      
Sbjct: 293 HHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 304 VDQ----REMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTK---NALAVALS 356
            D+     E     L P  A+ RK+F +  +F           P          L++   
Sbjct: 352 CDKLTTIIESSLNVLEP--AEYRKMFDRLSVF-----------P-PSAHIPTILLSLIWF 397

Query: 357 KLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVE 416
            +   D   +V             +L     VE+  Q                       
Sbjct: 398 DVIKSDVMVVVN------------KLHKYSLVEK--QP---------------------- 421

Query: 417 MLTNSRGSIPIIFLVTDGAVEDE----RQICDA--MKSRLTNGGSICPR----IYTFGIG 466
               S  SIP I+L     +E+E    R I D   +     +   I P      Y+  IG
Sbjct: 422 --KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IG 478

Query: 467 SY----CNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTLKDLD 522
            +      H     + +    +     D   +E   QK+     +   +   ++TL+ L 
Sbjct: 479 -HHLKNIEHP--ERMTLFRMVFL----DFRFLE---QKIRHDSTAWNASGSILNTLQQL- 527

Query: 523 EFEMYPSRIPDLSSESPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELK----LQLAKDI 578
             + Y   I D     P     +Y+      L    FL  +   ++  K    L++A   
Sbjct: 528 --KFYKPYICD---NDP-----KYERLVNAILD---FLPKIEENLICSKYTDLLRIALMA 574

Query: 579 PLDRIC--AKQQID 590
             + I   A +Q+ 
Sbjct: 575 EDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 9e-09
 Identities = 63/438 (14%), Positives = 120/438 (27%), Gaps = 112/438 (25%)

Query: 251 HHLKQLRRDVGKLGYSYES--EVLKWSNI-DFDFSYTV-SPSHIFGGV----LLQSPSLH 302
           HH   +  + G+  Y Y+    V + + + +FD       P  I        ++ S    
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK--- 58

Query: 303 DVDQREMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGD 362
           D     +   + L   +K  ++ +K   F+ ++        L      L   +       
Sbjct: 59  DAVSGTLRLFWTL--LSKQEEMVQK---FVEEV--------LRINYKFLMSPIKTEQRQP 105

Query: 363 SFNIVAFNGETYLFSTSMELATKEAVERA---------------HQWIGINFIAG-GSTN 406
           S     +  +        ++  K  V R                 + + I+ + G G T 
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 407 ICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLT----NGGSICPRIYT 462
           +   +  + ++          IF +          + + ++  L     N  S       
Sbjct: 166 VALDVCLSYKVQCKMDFK---IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 463 FGIGSYCNHYFLRMLAMISRGYYGAAYDLDSI---------EIQMQKLFTRGFSSVLANI 513
             +  +     LR L + S+ Y      L ++          +  + L T  F  V   +
Sbjct: 223 IKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 514 AIDTLKD--LDEFE--MYPS------------RIPDLSSE----SPLIVS--GRYQGKFP 551
           +  T     LD     + P             R  DL  E    +P  +S          
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 552 DTLK-------------AKGFLGDLSNFVVELK---LQLA---KD--IPLDRICAKQQID 590
            T                +  L  L     E +    +L+       IP   +       
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLS------ 393

Query: 591 LLTAQAWFSEDKRLEEKV 608
           L+    WF   K     V
Sbjct: 394 LI----WFDVIKSDVMVV 407

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 81/590 (13%), Positives = 157/590 (26%), Gaps = 218/590 (36%)

Query: 2   ADDFVKAVEDGLKLSKRLYFGKDRPVTPPKVP-SSMDKSGAVDMLLPKSPMVYAVITDPK 60
           A   V  ++  LKL + L   + RP     V    +  SG       K+ +   V    K
Sbjct: 127 AKYNVSRLQPYLKLRQALL--ELRPA--KNVLIDGVLGSG-------KTWVALDVCLSYK 175

Query: 61  IVDNPDIPSY------------------------QPYVHGRCDPPSLIPLQMNAVELDV- 95
           +    D   +                         P    R D  S I L++++++ ++ 
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 96  ---------DCYLDTAFVRVSGTWRVHCVMGSKSCD--CRIAVPMGDQGSILGVEAEISG 144
                    +C L    V+ +  W         + +  C+I +    +     V   +S 
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAW--------NAFNLSCKILLTTRFK----QVTDFLSA 283

Query: 145 KSYHTQLIALGENDGAGKSASVETGSFLK-PNIFTLTLP-QIDGGSYLSIRL-------- 194
            +  T +     +              LK  +     LP ++   +   + +        
Sbjct: 284 ATT-THISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 195 --RWSQ-------KLSYRDGEFSVNV--P------FK----FPEYVTPAIKKIPKREKIH 233
              W         KL+    E S+NV  P      F     FP         IP      
Sbjct: 341 LATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSA-----HIP------ 388

Query: 234 LNVNAGTGTEVLC--------NTSSHHLKQLRRDVGKLGYSYESEVLKWSNIDFDFSYTV 285
                   T +L         +     + +L +          S V K      + + ++
Sbjct: 389 --------TILLSLIWFDVIKSDVMVVVNKLHK---------YSLVEKQPK---ESTISI 428

Query: 286 SPSHIFGGVLL-------QSPSLHD--VDQREMFCMYLLPGTAKSRKVFKKDVIFIVDIS 336
                   + L          +LH   VD       Y +P     +     D+I      
Sbjct: 429 ---P---SIYLELKVKLENEYALHRSIVDH------YNIP-----KTFDSDDLI------ 465

Query: 337 GSMQGKPLEDT--KNALAVALSKLDPGDSFNIVAFNGETYL-FSTSMELATKEAVERAHQ 393
                 P  D    + +   L  ++  +   +  F    +L F                 
Sbjct: 466 -----PPYLDQYFYSHIGHHLKNIEHPERMTL--FR-MVFLDFR---------------- 501

Query: 394 WIGINFIAGGST-NICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTN 452
           ++        +  N    +   ++ L   +  I       D   + ER +   +   L  
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI------CDNDPKYERLVNAILDF-LPK 554

Query: 453 GGSICPRIYTFGIGSYCNHYFLRMLAMI--SRGYYGAAYDLDSIEIQMQK 500
                          Y +   L  +A++      +  A+       Q+Q+
Sbjct: 555 IEENLIC------SKYTD---LLRIALMAEDEAIFEEAHK------QVQR 589

>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Length = 178

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 25/155 (16%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYL------FST 378
           D+ F++D SGS+  +     K  L   L  L  G       +V ++ + +L       + 
Sbjct: 19  DICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNA 78

Query: 379 SMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVE-MLTNSRGSIP----IIFLVTD 433
             +     AV              GSTN    L    + + T SR        ++  +TD
Sbjct: 79  VDKQLAAHAVLDMPYK-------KGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTD 131

Query: 434 GAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY 468
           G  + + +   A K  +   G I   +    +G Y
Sbjct: 132 GESDSDFRTVRAAK-EIRELGGI---VTVLAVGHY 162

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} Length = 535

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 318 TAKSRKVFKKDVIFIVDISGSMQGKPLEDTKN------ALAVALSKLDPGDSFNIVAFNG 371
              + +      +  +D+SGSM    +           A A++L  L        + F  
Sbjct: 354 AFGNVQPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAE 413

Query: 372 ETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLV 431
           +      +     + A+++A        ++ G T+   P+  A +   +         + 
Sbjct: 414 QFRPLGITPRDTLESAMQKAQS------VSFGGTDCAQPILWAAQERLDVD----TFVVY 463

Query: 432 TDGAV-EDERQICDAMKSRLTNGGSICPRIYTFGIGSY 468
           TD      +     A+       G   P++   G+ + 
Sbjct: 464 TDNETWAGQVHPTVALDQYAQKMG-RAPKLIVVGLTAT 500

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Length = 242

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNA---LAVALSKLDPGDSFNIVAFNGETYLFSTSMELAT 384
            ++  +D S SM+ K +   + A   LA++L       + +++AF G+    +  ++  +
Sbjct: 136 HLVVCLDTSASMRDK-IPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFS 194

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP 426
                          +A G T     +  A ++L +   ++ 
Sbjct: 195 S--EVNVAALEA-ELVARGGTPTGPAIDHAADLLLSHARNVD 233

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 29/177 (16%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGD---SFNIVAFNGETYL------FST 378
           ++  ++D S S+        K +L   + K+        + +V +     +        +
Sbjct: 17  NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 76

Query: 379 SMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP--------IIFL 430
           S      + +   +            TN    L     M++      P        +I L
Sbjct: 77  SNADWVTKQLNEINYEDHKL---KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIIL 133

Query: 431 VTDG---AVEDERQICDAMKSRLTNGGSICP------RIYTFGIGSYCNHYFLRMLA 478
           +TDG      D   + D ++  L  G            +Y FG+G   N   +  LA
Sbjct: 134 MTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALA 190

>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Length = 213

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 16/152 (10%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           D++ ++D S S+   P +     L   L ++D G       IV +           + ++
Sbjct: 9   DIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSS 66

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVE-MLTNSRGSIP----IIFLVTDGAVEDE 439
            E V  A +   I    G  T        A +   T +RG+      ++ +VTDG   D 
Sbjct: 67  TEEVLVAAK--KIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN 124

Query: 440 RQICDAMKSRLTNGGSICPRIYTFGIGSYCNH 471
            ++   ++    +        ++  I    N 
Sbjct: 125 HRLKKVIQ-DCEDENIQ---RFSIAILGSYNR 152

>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Length = 223

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 16/151 (10%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           D++ ++D S S+   P E     L   L ++D G       IV +           + ++
Sbjct: 24  DIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSS 81

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVE-MLTNSRGSIP----IIFLVTDGAVEDE 439
            E V  A     I    G  T     +  A +   T +RG+      ++ +VTDG   D 
Sbjct: 82  TEEVLVAAN--KIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN 139

Query: 440 RQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470
            ++   ++    +        ++  I  + N
Sbjct: 140 YRLKQVIQ-DCEDENIQ---RFSIAILGHYN 166

>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Length = 200

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 16/151 (10%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           DV+ + D S S+   P +  KN L   +  LD G +     ++ +     +        T
Sbjct: 8   DVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKT 65

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVE-MLTNSRGSIP----IIFLVTDGAVEDE 439
           KE +  A      +   G  TN    +  A +   + + G       ++ +VTDG   D 
Sbjct: 66  KEEMIVATS--QTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG 123

Query: 440 RQICDAMKSRLTNGGSICPRIYTFGIGSYCN 470
             +   +  +  +   +    +   +  Y N
Sbjct: 124 SMLKAVID-QCNHDNIL---RFGIAVLGYLN 150

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Length = 194

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 17/163 (10%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS-FNIVAFNGETYLFSTSMELATKE 386
           D+ F++D SGS+        K  ++  + +L    + F+++ ++ E  +  T  E     
Sbjct: 7   DIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNP 66

Query: 387 AVERAHQWIGINFIA--GGSTNICAPLTKAV-EMLTNSRGSIP----IIFLVTDGAVEDE 439
                     +  I    G T+    + K V E+   + G+      I+ ++TDG    +
Sbjct: 67  NPRSL-----VKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGD 121

Query: 440 RQICDAMKSRLTNGGSICPRIYTFGIGSYCN-HYFLRMLAMIS 481
               + +       G I    Y  G+G         + L  I+
Sbjct: 122 PLGYEDVIPEADREGVI---RYVIGVGDAFRSEKSRQELNTIA 161

>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Length = 199

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 28/182 (15%), Positives = 62/182 (34%), Gaps = 22/182 (12%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           DV F+++ S  +       +K  +   + ++D G       ++ ++    +     E  +
Sbjct: 23  DVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQS 82

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVE-MLTNSRGSIP----IIFLVTDGAVEDE 439
           K  + +  +   I +  G  TN    L    +     S+G       ++++VT     DE
Sbjct: 83  KGDILQRLR--EIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDE 140

Query: 440 RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYD-LDSIEIQM 498
            +       RL     I  ++   G+G   N   L  +   +       ++ L      +
Sbjct: 141 IK-------RLPGD--I--QVVPIGVGPNANVQELERIGWPNAPILIQDFETLPREAPDL 189

Query: 499 QK 500
             
Sbjct: 190 VL 191

>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Length = 189

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 21/161 (13%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           DVI ++D S S      ++ K+     +SK + G      +++ +   T +      +  
Sbjct: 7   DVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPE 66

Query: 385 KEAVERAHQWIGINFIA--GGSTNICAPLTKAVE-MLTNSRGSIP----IIFLVTDGAVE 437
           K  +        ++ +   GG + I   L  AV  + +   G+ P     + ++      
Sbjct: 67  KAHLLSL-----VDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSV 121

Query: 438 DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478
           D   +  A      +       ++  GIG   +   LR+LA
Sbjct: 122 DS--VDAAAD-AARSNRVT---VFPIGIGDRYDAAQLRILA 156

>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Length = 198

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 25/167 (14%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS-FNIVAFNGETYL------FSTSM 380
           D++F++D SGS+  +      N +   +S+     + F+++ F+ +         F  S 
Sbjct: 11  DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSS 70

Query: 381 ELATKEAVERAHQWIGINFIAGGSTNICAPLTKAV-EMLTNSRGSIP----IIFLVTDGA 435
                  +   HQ         G T     +   V  +   S G+      I+ ++TDG 
Sbjct: 71  NP--LSLLASVHQL-------QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGK 121

Query: 436 VEDERQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFLRMLAMIS 481
            E +      +       G I    Y  G+G  + N    + L  I+
Sbjct: 122 KEGDSLDYKDVIPMADAAGII---RYAIGVGLAFQNRNSWKELNDIA 165

>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} Length = 185

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 22/187 (11%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS-FNIVAFNG----ETYLFSTSMEL 382
           D+ FI+D SGS+      +    +     K        + + F+        L     ++
Sbjct: 9   DLYFILDKSGSV-LHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQI 67

Query: 383 ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEML-TNSRGSIP---IIFLVTDG-AVE 437
                  +           GG T +     +A E +   +R       +I  +TDG   E
Sbjct: 68  RQGLEELQKVLP-------GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHE 120

Query: 438 DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQ 497
           D     +   +R  + G+I   +Y  G+  + N   L  +A      +       +++  
Sbjct: 121 DLFFYSEREANRSRDLGAI---VYAVGVKDF-NETQLARIADSKDHVFPVNDGFQALQGI 176

Query: 498 MQKLFTR 504
           +  +  +
Sbjct: 177 IHSILKK 183

>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Length = 202

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 14/159 (8%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           D++F++D S  +     E  K  +   + +L          +V ++  ++ +    +   
Sbjct: 15  DLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKR 74

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEML--TNSRGSIP-IIFLVTDGAVEDE-- 439
              + R      + +      +    L   +  +     R     I  L+          
Sbjct: 75  PSELRRIAS--QVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMS 132

Query: 440 RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478
           R     ++  L     I   +   GIG + N   +R++ 
Sbjct: 133 RNFVRYVQ-GLKKKKVI---VIPVGIGPHANLKQIRLIE 167

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Length = 538

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 320 KSRKVFKKDVIFIVDISGSMQGKPLEDTKN----ALAVALSKLDPGDSFNIVAFNGETYL 375
           K  +   K  +  +D+S SM  + L    N    A A+ +         ++VAF+ E   
Sbjct: 362 KLVEPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLP 421

Query: 376 FSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGA 435
              ++ +   E VE+         I  GST+   P+  A +    +  +  I  + TD  
Sbjct: 422 CPITVNMLLHEVVEKMSD------ITMGSTDCALPMLWAQK----TNTAADIFIVFTDCE 471

Query: 436 VE-DERQICDAMKSRLTNGGSICPRIYTFGIGSY 468
              ++     A+K      G I  ++    + S 
Sbjct: 472 TNVEDVHPATALKQYREKMG-IPAKLIVCAMTSN 504

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 23/166 (13%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGD---SFNIVAFNGETYLFSTSMELAT 384
           ++  ++D S S+        K  L   + K+        + +V +     ++    E  +
Sbjct: 3   NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 62

Query: 385 KEAVERAHQWIGINF---IAGGSTNICAPLTKAVEMLTNSRGSIP--------IIFLVTD 433
             A     Q   IN+        TN    L     M++      P        +I L+TD
Sbjct: 63  SNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTD 122

Query: 434 GAV---EDERQICDAMKSRLTNGGSICP------RIYTFGIGSYCN 470
           G      D   + D ++  L  G            +Y FG+G   N
Sbjct: 123 GLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	613
4fx5_A	464	VON willebrand factor type A; structural genomics,	99.91
1ijb_A	202	VON willebrand factor; dinucleotide-binding fold,	99.88
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	99.87
1q0p_A	223	Complement factor B; VON willebrand factor, MAC-1,	99.86
4hqo_A	266	Sporozoite surface protein 2; malaria, gliding mot	99.85
3zqk_A	199	VON willebrand factor; blood clotting, adamts-13,	99.84
1shu_X	182	Anthrax toxin receptor 2; alpha/beta rossmann fold	99.84
4hqf_A	281	Thrombospondin-related anonymous protein, trap; ma	99.84
1mf7_A	194	Integrin alpha M; cell adhesion; 1.25A {Homo sapie	99.83
2b2x_A	223	Integrin alpha-1; computational design, antibody-a	99.83
3n2n_F	185	Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho	99.83
1atz_A	189	VON willebrand factor; collagen-binding, hemostasi	99.83
1n3y_A	198	Integrin alpha-X; alpha/beta rossmann fold, cell a	99.83
1pt6_A	213	Integrin alpha-1; cell adhesion; 1.87A {Homo sapie	99.82
1v7p_C	200	Integrin alpha-2; snake venom, C-type lectin, anta	99.82
1mjn_A	179	Integrin alpha-L; rossmann fold, immune system; 1.	99.79
2xgg_A	178	Microneme protein 2; A/I domain, cell adhesion, hy	99.77
2x31_A	189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	99.77
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	99.76
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.76
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.75
3k6s_A	1095	Integrin alpha-X; cell receptor, adhesion molecule	99.65
2x5n_A	192	SPRPN10, 26S proteasome regulatory subunit RPN10;	99.61
4b4t_W	268	RPN10, 26S proteasome regulatory subunit RPN10; hy	99.59
2ww8_A	893	RRGA, cell WALL surface anchor family protein; IGG	99.49
1yvr_A	538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	99.3
1jey_B	565	KU80; double-strand DNA break repair, non-homologo	99.26
2nvo_A	535	RO sixty-related protein, RSR; alpha helical repea	99.03
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	98.9
1jey_A	609	KU70; double-strand DNA break repair, non-homologo	98.89
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	98.39
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	98.32
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	98.27
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	98.18
2iue_A	212	Pactolus I-domain; membrane protein, CD, ITC, limb	98.17
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	98.16
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.04
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	97.77
3t3p_B	472	Integrin beta-3; integrin, cell adhesion, blood cl	97.75
3vi3_B	454	Integrin beta-1; beta propeller fold, rossman fold	97.54
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.53
3v4v_B	503	Integrin beta-7; cell adhesion, madcam-1, membrane	97.46
3efo_B	770	SEC24 related gene family, member D; copii, coat p	97.38
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	97.35
4g2a_A	322	Hypothetical protein; two domains protein, yarhg d	96.86

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}

Probab=99.91  E-value=1.5e-23  Score=227.44  Aligned_cols=190  Identities=22%  Similarity=0.200  Sum_probs=164.6

Q ss_pred             CCCceEEEEEeCCCCCC--CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccc---cccCHHHHHHHHHHHhhc
Q 007207          324 VFKKDVIFIVDISGSMQ--GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM---ELATKEAVERAHQWIGIN  398 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~--g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~---~~~~~~~~~~a~~~i~~~  398 (613)
                      ..+.+++||||+||||.  +.+++.+|+++..+++.|.++++|+|+.|++.+..+.+.+   ...+..+...+.++|+ .
T Consensus        75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~-~  153 (464)
T 4fx5_A           75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVG-R  153 (464)
T ss_dssp             -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHH-T
T ss_pred             CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHH-c
Confidence            46799999999999999  8999999999999999999999999999999999887763   3457788888888887 7


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      +.++|||+++.||..|++.+...++..+.|||||||.+++.. .......+..    ..+++||+||+|.+.|..+|+.|
T Consensus       154 L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~~~~l~~~~~a~----~~~i~i~tiGiG~~~d~~~L~~I  229 (464)
T 4fx5_A          154 LHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESETPADLARAIQSS----IGNFTADCRGIGEDWEPKELRKI  229 (464)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSCHHHHHHHHHHH----TTTCEEEEEEESSSSCHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCChHHHHHHHHHh----cCCCeEEEEEeCCccCHHHHHHH
Confidence            889999999999999999998766667899999999987432 2222222221    23489999999999999999999


Q ss_pred             HHhcCcEEEEcCCCcHHHHHHHHHHHHhccceeeeEEEEec
Q 007207          478 AMISRGYYGAAYDLDSIEIQMQKLFTRGFSSVLANIAIDTL  518 (613)
Q Consensus       478 A~~~gG~~~~v~~~~~l~~~l~~~~~~~~~p~l~~i~l~~~  518 (613)
                      |+.++|.|+++.+.+++...|.+++..+.++.++|+++.+.
T Consensus       230 A~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~  270 (464)
T 4fx5_A          230 ADALLGTVGIIRDPATLAEDFREMTAKSMGKEVADVALRLW  270 (464)
T ss_dssp             HHHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred             HHhCCCEEEEcCCHHHHHHHHHHHHHHhhchheeeeEEEEE
Confidence            99999999999999999999999999999999999988764

>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C

Probab=99.88  E-value=2.4e-21  Score=187.55  Aligned_cols=176  Identities=14%  Similarity=0.155  Sum_probs=140.6

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      .+.+++||||.||||.+.+++.+|+++..+++.|.   .++||+|+.|++.++...++....+.+.+.++++.+.   ..
T Consensus        12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~---~~   88 (202)
T 1ijb_A           12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVK---YA   88 (202)
T ss_dssp             SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC---CC
T ss_pred             CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCc---CC
Confidence            47999999999999998899999999999999987   5789999999999988888765557777777766443   23


Q ss_pred             CC-CcchHHHHHHHHHHH-hc--CCCCccEEEEEecCCcCch--hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207          402 GG-STNICAPLTKAVEML-TN--SRGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR  475 (613)
Q Consensus       402 ~G-gT~l~~aL~~A~~~l-~~--~~~~~~~IillTDG~~~~~--~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~  475 (613)
                      +| +|+++.||+.|.+.+ ..  +++..+.|||+|||.+++.  ..+...++. +++   .+++||+||+|.+.|...|+
T Consensus        89 gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~-l~~---~gi~i~~igvG~~~~~~~L~  164 (202)
T 1ijb_A           89 GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQG-LKK---KKVIVIPVGIGPHANLKQIR  164 (202)
T ss_dssp             CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHH-HHH---TTEEEEEEEESTTSCHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccchHHHHHHHHH-HHH---CCCEEEEEecCCcCCHHHHH
Confidence            44 499999999998654 32  2345679999999998653  233333333 332   34899999999989999999


Q ss_pred             HHHHhc-CcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          476 MLAMIS-RGYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       476 ~lA~~~-gG~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      .||..+ +|.++.+.+.++|...+.++.+.+|.
T Consensus       165 ~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~  197 (202)
T 1ijb_A          165 LIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD  197 (202)
T ss_dssp             HHHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HHhCCCCcccEEEeCCHHHHHHHHHHHHHHhhc
Confidence            999864 68888999999999999999988875

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=1.8e-21  Score=190.38  Aligned_cols=177  Identities=20%  Similarity=0.250  Sum_probs=142.4

Q ss_pred             CCCCceEEEEEeCCCCCCCC-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhh
Q 007207          323 KVFKKDVIFIVDISGSMQGK-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI  397 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  397 (613)
                      +..+.+++||||+||||.+.     +++.+|+++..++..++ +++|+|+.|++.+..+.+.+.  +...+..+++.+..
T Consensus         8 ~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~~--~~~~~~~~l~~l~~   84 (218)
T 3ibs_A            8 KRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPITS--DYISAKMFLESISP   84 (218)
T ss_dssp             --CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEES--CHHHHHHHHHTCCG
T ss_pred             ccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCCC--CHHHHHHHHHhcCc
Confidence            55789999999999999975     89999999999999986 899999999999988887654  67777777776654


Q ss_pred             cCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecC----------
Q 007207          398 NFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGS----------  467 (613)
Q Consensus       398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~----------  467 (613)
                      .....|+|++..||..|.+.+...+...+.|||+|||.++.. .....+ +.+++   .+++||+||+|.          
T Consensus        85 ~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-~~~~~~-~~~~~---~~i~v~~igig~~~~~~~~~~g  159 (218)
T 3ibs_A           85 SLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAA-KAAAE---KGIQVSVLGVGMPEGAPIPVEG  159 (218)
T ss_dssp             GGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-CHHHHH-HHHHT---TTEEEEEEEESCTTCEECBCTT
T ss_pred             ccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-cHHHHH-HHHHh---cCCEEEEEEecCCCCCcccccC
Confidence            445689999999999999998766566789999999998765 223322 23332   358999999997          


Q ss_pred             ---------------CCCHHHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          468 ---------------YCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       468 ---------------~~~~~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                                     ..|...|+.||+.+||.|+++.+..+....+.+.++++..
T Consensus       160 ~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~~  214 (218)
T 3ibs_A          160 TNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMAK  214 (218)
T ss_dssp             SSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHHH
T ss_pred             CCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhhc
Confidence                           5789999999999999999999866666666666665543

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=99.86  E-value=1.6e-21  Score=191.31  Aligned_cols=182  Identities=18%  Similarity=0.234  Sum_probs=129.4

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN  398 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~  398 (613)
                      ..+.+++||||+||||.+.+++.+|+++..+++.+   +++++|+|+.|++.+....++..+.  +.+.+..+++.+...
T Consensus        13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~   92 (223)
T 1q0p_A           13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYE   92 (223)
T ss_dssp             --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTT
T ss_pred             CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcccc
Confidence            45799999999999999989999999999998665   4578999999999998877554332  446666666655311


Q ss_pred             C-CCCCCcchHHHHHHHHHHHhcCC--------CCccEEEEEecCCcC---chhHHHHHHHHHH------HcCCCCCceE
Q 007207          399 F-IAGGSTNICAPLTKAVEMLTNSR--------GSIPIIFLVTDGAVE---DERQICDAMKSRL------TNGGSICPRI  460 (613)
Q Consensus       399 ~-~~~GgT~l~~aL~~A~~~l~~~~--------~~~~~IillTDG~~~---~~~~~~~~~~~~~------~~~~~~~~~i  460 (613)
                      . ..+|+|+++.||..|.+.+....        ...+.|||+|||.++   +.....+.+++..      ......+++|
T Consensus        93 ~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i  172 (223)
T 1q0p_A           93 DHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDV  172 (223)
T ss_dssp             SCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEE
T ss_pred             cccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEE
Confidence            0 25799999999999999987432        346789999999987   3444445554432      2333456899


Q ss_pred             EEEEecCCCCHHHHHHHHHhcCc--EEEEcCCCcHHHHHHHHHHHHh
Q 007207          461 YTFGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQMQKLFTRG  505 (613)
Q Consensus       461 ~tigiG~~~~~~~L~~lA~~~gG--~~~~v~~~~~l~~~l~~~~~~~  505 (613)
                      |+||+|.+.+...|+.||..++|  .|+.+.+.++|...+.+++++.
T Consensus       173 ~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~s  219 (223)
T 1q0p_A          173 YVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES  219 (223)
T ss_dssp             EEEECSSCCCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred             EEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhccc
Confidence            99999998999999999999999  8999999999988888777654

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*

Probab=99.85  E-value=1.4e-20  Score=190.07  Aligned_cols=182  Identities=18%  Similarity=0.174  Sum_probs=144.8

Q ss_pred             CCceEEEEEeCCCCCCCCcH-HHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207          325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN  398 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~-~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~  398 (613)
                      .+.|++||||.||||.+..+ +.+|+++..+++.|.   ++++|+|+.|++.+..+.++....  +...+..+++.+...
T Consensus        17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~   96 (266)
T 4hqo_A           17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKT   96 (266)
T ss_dssp             CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHHH
T ss_pred             CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhhc
Confidence            56899999999999998888 589999999999997   689999999999999888765431  345555666555322


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR  475 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~  475 (613)
                      ..++|+|+++.||..|.+++...   ++..+.|||||||.+++.......++... +   .+++||+||+|.+.+..+|+
T Consensus        97 ~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~-~---~gi~i~~iGiG~~~~~~~L~  172 (266)
T 4hqo_A           97 YTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLK-Q---RNVRLAVIGIGQGINHQFNR  172 (266)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHH-H---TTCEEEEEECSSSCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHH-H---CCCEEEEEecCcccCHHHHH
Confidence            36789999999999999888754   34567999999999987655555544443 2   24899999999999999999


Q ss_pred             HHHHhc--C--cEEEEcCCCcHHHHHHHHHHHHhcccee
Q 007207          476 MLAMIS--R--GYYGAAYDLDSIEIQMQKLFTRGFSSVL  510 (613)
Q Consensus       476 ~lA~~~--g--G~~~~v~~~~~l~~~l~~~~~~~~~p~l  510 (613)
                      .||..+  +  +.++++.+.++|.+.+.+++++++....
T Consensus       173 ~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC~~~~  211 (266)
T 4hqo_A          173 LIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVE  211 (266)
T ss_dssp             HHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCEEEEE
T ss_pred             HhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhccccc
Confidence            999874  2  3778888888898888888877776543

>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*

Probab=99.84  E-value=1.8e-20  Score=180.86  Aligned_cols=169  Identities=14%  Similarity=0.145  Sum_probs=137.2

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      ...+.|++||||.||||.+.+++.+|+++..+++.|   ++++||+|+.|+++++...++....+.+.+.++++.+.   
T Consensus        18 ~~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~---   94 (199)
T 3zqk_A           18 NSMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIR---   94 (199)
T ss_dssp             -CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCC---
T ss_pred             CCCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCc---
Confidence            457899999999999999989999999999999999   47899999999999999888876667777777776553   


Q ss_pred             CCCC-CcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHH
Q 007207          400 IAGG-STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYF  473 (613)
Q Consensus       400 ~~~G-gT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~  473 (613)
                      ..+| +|+++.||..|.+.+..     +++..+.|||+|||...+...          . ...+++||+||+|.+.|...
T Consensus        95 ~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------~-~~~~v~v~~iGiG~~~~~~~  163 (199)
T 3zqk_A           95 YQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------R-LPGDIQVVPIGVGPNANVQE  163 (199)
T ss_dssp             CCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC----------C-CCTTEEEEEEEESTTCCHHH
T ss_pred             CCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH----------H-HhCCCEEEEEEcCCCCCHHH
Confidence            2344 59999999999985421     234457999999999765421          1 12458999999999899999


Q ss_pred             HHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          474 LRMLAMISRGYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       474 L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      |+.||. ++ .++++.+.++|...+.+++.++|.
T Consensus       164 L~~iA~-~~-~~~~~~~~~~L~~~~~~l~~~~c~  195 (199)
T 3zqk_A          164 LERIGW-PN-APILIQDFETLPREAPDLVLQRCC  195 (199)
T ss_dssp             HHHHHT-TS-CCEEESCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CC-ceEEeCCHHHHHHHHHHHHHhhcc
Confidence            999998 44 445889999999999999988874

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*

Probab=99.84  E-value=4e-20  Score=175.34  Aligned_cols=174  Identities=14%  Similarity=0.204  Sum_probs=134.8

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh-CCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSK-LDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~-L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      .+.+++||||.||||.+..+. .++.++.++.. +.++++|+|+.|++.+....+++  .+...+..+++.+. ...++|
T Consensus         5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~--~~~~~~~~~l~~l~-~~~~~g   80 (182)
T 1shu_X            5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT--GDRGKISKGLEDLK-RVSPVG   80 (182)
T ss_dssp             SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--CCHHHHHHHHHHHH-TCCCCS
T ss_pred             CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--CCHHHHHHHHHhcc-cCCCCC
Confidence            578999999999999975443 34444444444 45799999999999998887765  37888888888886 567889


Q ss_pred             CcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchhH-HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207          404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDERQ-ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI  480 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~~-~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~  480 (613)
                      +|++..||..|.+.+...  ++..+.|||+|||.+++... ......+.+++   .++++|+||+| +.+...|+.||..
T Consensus        81 ~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~---~~i~i~~igvg-~~~~~~L~~ia~~  156 (182)
T 1shu_X           81 ETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRS---LGASVYCVGVL-DFEQAQLERIADS  156 (182)
T ss_dssp             CCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHH---TTCEEEEEECS-SCCHHHHHHHSSS
T ss_pred             CchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHh---CCCEEEEEeCC-cCCHHHHHHHhCC
Confidence            999999999999998654  34568999999999875432 12223333333   34899999999 4689999999999


Q ss_pred             cCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          481 SRGYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       481 ~gG~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      ++|.|+...+.++|...+.++.+++|
T Consensus       157 ~~~~~~~~~~~~~L~~~~~~i~~~iC  182 (182)
T 1shu_X          157 KEQVFPVKGGFQALKGIINSILAQSC  182 (182)
T ss_dssp             GGGEEESSSTTHHHHHHHHHHHHTBC
T ss_pred             CCceEEccCCHHHHHHHHHHHHhccC
Confidence            98888776688999998888877664

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A

Probab=99.84  E-value=3.6e-20  Score=188.65  Aligned_cols=181  Identities=16%  Similarity=0.146  Sum_probs=147.9

Q ss_pred             CCceEEEEEeCCCCCCCCcH-HHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhc
Q 007207          325 FKKDVIFIVDISGSMQGKPL-EDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGIN  398 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~-~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~  398 (613)
                      .+.||+||||.||||.+..+ +.+|+++..+++.|..   +++|+|+.|++++....++....  +.+.+.++++.+...
T Consensus        20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~   99 (281)
T 4hqf_A           20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLST   99 (281)
T ss_dssp             SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHT
T ss_pred             CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhc
Confidence            58999999999999998777 8999999999999876   78999999999998877765532  467777788777533


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCC---CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHH
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNSR---GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR  475 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~~---~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~  475 (613)
                      ...+|+|+++.||..|.+.+....   +..+.|||||||.+++.......++... +   .+++||+||+|.+.+..+|+
T Consensus       100 ~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~-~---~gv~i~~igiG~~~~~~~L~  175 (281)
T 4hqf_A          100 NLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLS-D---RGVKIAVFGIGQGINVAFNR  175 (281)
T ss_dssp             TGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHH-H---TTCEEEEEEESSSCCHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHH-H---CCCEEEEEeCCCccCHHHHH
Confidence            456899999999999998886532   3567999999999987655555544443 2   34899999999999999999


Q ss_pred             HHHHhc--Cc--EEEEcCCCcHHHHHHHHHHHHhccce
Q 007207          476 MLAMIS--RG--YYGAAYDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       476 ~lA~~~--gG--~~~~v~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      .||...  +|  .++.+.+.+++...+..+..+++..+
T Consensus       176 ~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~v  213 (281)
T 4hqf_A          176 FLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVEV  213 (281)
T ss_dssp             HHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred             hhhCCCCCCCCCceEEecchhhhhcccCCcccccCCCc
Confidence            999873  44  78889999999999999988888763

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G

Probab=99.83  E-value=4.5e-21  Score=184.22  Aligned_cols=175  Identities=18%  Similarity=0.250  Sum_probs=135.1

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCC-CC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFI-AG  402 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~-~~  402 (613)
                      .+.+++||||.||||.+.+++.+|+++..+++.|. ++++|+|+.|++.+....++....+...   ..+.++ .+. .+
T Consensus         4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~~~~~~~~---~~~~i~-~l~~~~   79 (194)
T 1mf7_A            4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPN---PRSLVK-PITQLL   79 (194)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHHHSCC---HHHHHT-TCCCCC
T ss_pred             CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecCCcCCHHH---HHHHHH-hCcCCC
Confidence            56899999999999998899999999999999986 5789999999999988777644222223   344444 344 58


Q ss_pred             CCcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----HH
Q 007207          403 GSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HY  472 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----~~  472 (613)
                      |+|+++.||..|.+.+..     +++..+.|||+|||.++ +.....+.++ .+++   .++++|+||+|...+    ..
T Consensus        80 g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~-~~~~---~gi~v~~igvG~~~~~~~~~~  155 (194)
T 1mf7_A           80 GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIP-EADR---EGVIRYVIGVGDAFRSEKSRQ  155 (194)
T ss_dssp             SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHH-HHHH---TTEEEEEEEESGGGCSHHHHH
T ss_pred             CCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHH-HHHH---CCCEEEEEEecccccccccHH
Confidence            999999999999975532     23346799999999987 4432222222 2222   248999999998875    78


Q ss_pred             HHHHHHHhc-CcEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          473 FLRMLAMIS-RGYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       473 ~L~~lA~~~-gG~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      .|+.||..+ +|.++.+.+.++|...+.++.++++.
T Consensus       156 ~L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic~  191 (194)
T 1mf7_A          156 ELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC  191 (194)
T ss_dssp             HHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             HHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHhh
Confidence            999999985 58899999999999999999888875

>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1

Probab=99.83  E-value=5.7e-20  Score=180.61  Aligned_cols=174  Identities=18%  Similarity=0.195  Sum_probs=135.2

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      .+.+++||||.||||.  .++.+|+++..+++.|.   ++++|+|+.|++++....++....+...+.+   .|+ .+..
T Consensus        21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~~~~---~i~-~l~~   94 (223)
T 2b2x_A           21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLV---AAN-KIVQ   94 (223)
T ss_dssp             -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHH---HHT-TCCC
T ss_pred             CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHHHHH---HHH-hhhc
Confidence            4799999999999998  59999999999999885   6899999999999988887754444454444   444 3443


Q ss_pred             -CC-CcchHHHHHHHHHHH-h----cCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----
Q 007207          402 -GG-STNICAPLTKAVEML-T----NSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----  470 (613)
Q Consensus       402 -~G-gT~l~~aL~~A~~~l-~----~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----  470 (613)
                       +| +|++..||..|.+.+ .    .+++..+.|||+|||..++.......+. .+++   .+++||+||+|...+    
T Consensus        95 ~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~-~~~~---~gi~v~~igvG~~~~~~~~  170 (223)
T 2b2x_A           95 RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQ-DCED---ENIQRFSIAILGHYNRGNL  170 (223)
T ss_dssp             CCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHH-HHHT---TTEEEEEEEECGGGC---C
T ss_pred             cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEecCccccccc
Confidence             34 499999999999874 3    2345567999999999987654433333 3332   358999999998766    


Q ss_pred             -----HHHHHHHHHh-cCcEEEEcCCCcHHHHHHHHHHHHhccc
Q 007207          471 -----HYFLRMLAMI-SRGYYGAAYDLDSIEIQMQKLFTRGFSS  508 (613)
Q Consensus       471 -----~~~L~~lA~~-~gG~~~~v~~~~~l~~~l~~~~~~~~~p  508 (613)
                           ...|+.||.. ++|.|+.+.+.++|...+.++.++++..
T Consensus       171 ~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic~~  214 (223)
T 2b2x_A          171 STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIFAL  214 (223)
T ss_dssp             CCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC--
T ss_pred             cchhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhcCc
Confidence                 4789999998 8899999999999999888888887653

>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=99.83  E-value=4.6e-20  Score=175.44  Aligned_cols=174  Identities=16%  Similarity=0.236  Sum_probs=136.7

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      ..+.|++||||.||||.+ .+...+++++.++..+ .++++|+|+.|++.++...+++.  +.+.+..+++.+. ...++
T Consensus         5 ~~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~~--~~~~~~~~i~~l~-~~~~~   80 (185)
T 3n2n_F            5 YGGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQ-KVLPG   80 (185)
T ss_dssp             BSEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC--CHHHHHHHHHHHH-TCCCC
T ss_pred             CCCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCC--CHHHHHHHHHHHh-hhcCC
Confidence            467899999999999987 5777888888877664 56899999999999998887764  8888999999887 45679


Q ss_pred             CCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCchhH-HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          403 GSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQ-ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~~~-~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      |+|+++.||+.|.+.+..    .....+.||++|||.+++... ......+.+++   .++++|+||+| +.+...|+.|
T Consensus        81 g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~---~gi~i~~igvg-~~~~~~L~~i  156 (185)
T 3n2n_F           81 GDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRD---LGAIVYAVGVK-DFNETQLARI  156 (185)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH---TTEEEEEEECS-SCCHHHHTTT
T ss_pred             CCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHH---CCCEEEEEEec-cCCHHHHHHH
Confidence            999999999999997732    223467999999999876542 11223333333   34899999999 6799999999


Q ss_pred             HHhcCcEEEEcCC-CcHHHHHHHHHHHHhc
Q 007207          478 AMISRGYYGAAYD-LDSIEIQMQKLFTRGF  506 (613)
Q Consensus       478 A~~~gG~~~~v~~-~~~l~~~l~~~~~~~~  506 (613)
                      |..+ |.++.+.+ .++|...+.++.+++|
T Consensus       157 A~~~-~~~~~~~~~~~~L~~~~~~i~~~iC  185 (185)
T 3n2n_F          157 ADSK-DHVFPVNDGFQALQGIIHSILKKSC  185 (185)
T ss_dssp             SSSG-GGEEEHHHHHHHHHHHHHHHHHTBC
T ss_pred             hCCC-CCeEEeccHHHHHHHHHHHHHHhcC
Confidence            9765 66667776 8888888888877764

>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A

Probab=99.83  E-value=1.2e-19  Score=173.63  Aligned_cols=173  Identities=16%  Similarity=0.167  Sum_probs=133.6

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      .+.+++||||.||||.+.+++.+|+++..+++.+..   +++|+|+.|++.+....++....+.+.+.++++.+.   ..
T Consensus         4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~---~~   80 (189)
T 1atz_A            4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQ---RE   80 (189)
T ss_dssp             CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC---CC
T ss_pred             CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCc---CC
Confidence            578999999999999989999999999999999863   479999999999998888755557777777776443   25


Q ss_pred             CCCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          402 GGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      +|+|+++.||..|.+.+...     ++..+.+|++|||..++..  .. ..+.+++   .++++|+||+|...+...|+.
T Consensus        81 ~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~~--~~-~~~~~~~---~gi~v~~igvG~~~~~~~L~~  154 (189)
T 1atz_A           81 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSV--DA-AADAARS---NRVTVFPIGIGDRYDAAQLRI  154 (189)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCC--HH-HHHHHHH---TTEEEEEEEESSSSCHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCchH--HH-HHHHHHH---CCCEEEEEEcCCcCCHHHHHH
Confidence            79999999999999988652     2334568889999876542  22 2222332   348999999999999999999


Q ss_pred             HHHhcCc-EEEEcCCCcHHHHHH---HHHHHHhc
Q 007207          477 LAMISRG-YYGAAYDLDSIEIQM---QKLFTRGF  506 (613)
Q Consensus       477 lA~~~gG-~~~~v~~~~~l~~~l---~~~~~~~~  506 (613)
                      ||..++| +++.+.+.+++....   .++++++|
T Consensus       155 iA~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iC  188 (189)
T 1atz_A          155 LAGPAGDSNVVKLQRIEDLPTMVTLGNSFLHKLC  188 (189)
T ss_dssp             HTGGGGGGGCEEESSTTHHHHHHHSCSHHHHHC-
T ss_pred             HHCCCcccCEEEecChhhHHHHHHHHHHHHHhhc
Confidence            9999875 456778888777654   35555554

>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1

Probab=99.83  E-value=5.1e-21  Score=184.23  Aligned_cols=177  Identities=19%  Similarity=0.236  Sum_probs=136.1

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      ..+.+++||||.||||.+..+..++++++.++..+ .++++|+|+.|++.+....++..   ..+.....+.+......+
T Consensus         7 ~~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~~---~~~~~~~~~~i~~l~~~~   83 (198)
T 1n3y_A            7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE---FRRSSNPLSLLASVHQLQ   83 (198)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHH---HHHCSSGGGGGTTCCCCC
T ss_pred             CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecCc---cCCHHHHHHHHhcCcCCC
Confidence            35789999999999999888999999999999999 68999999999999887766532   122233444454222368


Q ss_pred             CCcchHHHHHHHHHHH-hc----CCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCCC----CHH
Q 007207          403 GSTNICAPLTKAVEML-TN----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSYC----NHY  472 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l-~~----~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~----~~~  472 (613)
                      |+|++..||..|.+.+ ..    +++..+.|||+|||.++ +.......+. .+++   .+++||+||+|...    +..
T Consensus        84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~-~~~~---~gi~i~~igvG~~~~~~~~~~  159 (198)
T 1n3y_A           84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIP-MADA---AGIIRYAIGVGLAFQNRNSWK  159 (198)
T ss_dssp             SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHH-HHHH---TTCEEEEEEESGGGGSSTTHH
T ss_pred             CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHH-HHHH---CCCEEEEEEccccccccccHH
Confidence            9999999999999554 32    23456799999999987 4332233232 2332   24899999999876    689


Q ss_pred             HHHHHHHhcCcEE-EEcCCCcHHHHHHHHHHHHhcc
Q 007207          473 FLRMLAMISRGYY-GAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       473 ~L~~lA~~~gG~~-~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      .|+.||..++|.| +.+.+.+++...+.++.++++.
T Consensus       160 ~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic~  195 (198)
T 1n3y_A          160 ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA  195 (198)
T ss_dssp             HHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             HHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhheec
Confidence            9999999999986 7788889999999999888875

>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A

Probab=99.82  E-value=1.1e-19  Score=177.30  Aligned_cols=175  Identities=18%  Similarity=0.204  Sum_probs=135.7

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      .+.+++||||.||||.  .++.+|+++..+++.|.   ++++|+|+.|++.+....++....+...+.++++    .+..
T Consensus         6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~----~l~~   79 (213)
T 1pt6_A            6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAK----KIVQ   79 (213)
T ss_dssp             -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHH----TCCC
T ss_pred             CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHH----hccC
Confidence            4789999999999998  59999999999999885   6899999999999988887754445555555554    3433


Q ss_pred             -CC-CcchHHHHHHHHHHH-h----cCCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----
Q 007207          402 -GG-STNICAPLTKAVEML-T----NSRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----  470 (613)
Q Consensus       402 -~G-gT~l~~aL~~A~~~l-~----~~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----  470 (613)
                       +| +|+++.||..|.+.+ .    .+++..+.|||+|||.+++.......+. .+++   .++++|+||+|...+    
T Consensus        80 ~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~-~~~~---~gi~i~~igig~~~~~~~~  155 (213)
T 1pt6_A           80 RGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQ-DCED---ENIQRFSIAILGSYNRGNL  155 (213)
T ss_dssp             CCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHH-HHHH---TTEEEEEEEECHHHHHTTC
T ss_pred             CCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEeccccccccc
Confidence             44 599999999999874 3    2345577999999999987654333333 3333   348999999997654    


Q ss_pred             -----HHHHHHHHHh-cCcEEEEcCCCcHHHHHHHHHHHHhccce
Q 007207          471 -----HYFLRMLAMI-SRGYYGAAYDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       471 -----~~~L~~lA~~-~gG~~~~v~~~~~l~~~l~~~~~~~~~p~  509 (613)
                           ...|+.||.. ++|.|+.+.+.+++...+.++.++++...
T Consensus       156 ~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~~~  200 (213)
T 1pt6_A          156 STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALE  200 (213)
T ss_dssp             CCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHTC--
T ss_pred             cchhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhheecc
Confidence                 4789999998 78999999999999999999888887643

>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A

Probab=99.82  E-value=3.2e-19  Score=172.14  Aligned_cols=173  Identities=19%  Similarity=0.197  Sum_probs=134.6

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      .+.+++||||.||||.  .++.+|+++..+++.+.   ++++|+|+.|+++++...++....+...+.++++    .+..
T Consensus         5 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~----~l~~   78 (200)
T 1v7p_C            5 SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATS----QTSQ   78 (200)
T ss_dssp             -CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHH----HCCC
T ss_pred             CcccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHH----hhhc
Confidence            3689999999999997  59999999999999986   5899999999999998888765445555555555    3433


Q ss_pred             -CC-CcchHHHHHHHHHH-Hhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEec-----CCC
Q 007207          402 -GG-STNICAPLTKAVEM-LTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIG-----SYC  469 (613)
Q Consensus       402 -~G-gT~l~~aL~~A~~~-l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG-----~~~  469 (613)
                       +| +|++..||..|.+. +..    +++..+.|||+|||.+++.......++. +++   .+++||+||+|     .+.
T Consensus        79 ~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~-~~~---~gi~i~~igvg~~~~~~~~  154 (200)
T 1v7p_C           79 YGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQ-CNH---DNILRFGIAVLGYLNRNAL  154 (200)
T ss_dssp             CCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHH-HHH---TTEEEEEEEECHHHHHTTC
T ss_pred             cCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHH-HHH---CCCEEEEEEeccccccccc
Confidence             34 69999999999996 432    2345679999999999876544333333 332   34899999994     445


Q ss_pred             C----HHHHHHHHHhcCcEE-EEcCCCcHHHHHHHHHHHHhcc
Q 007207          470 N----HYFLRMLAMISRGYY-GAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       470 ~----~~~L~~lA~~~gG~~-~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      +    ...|+.||..++|.| +.+.+.+++...+.++.+++|.
T Consensus       155 ~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic~  197 (200)
T 1v7p_C          155 DTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS  197 (200)
T ss_dssp             CCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhcC
Confidence            5    567999999998765 6788999999999999988875

>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...

Probab=99.79  E-value=3.1e-20  Score=176.16  Aligned_cols=166  Identities=14%  Similarity=0.156  Sum_probs=129.2

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC-CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS  404 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~-~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg  404 (613)
                      +.|++||||.||||.+.+++.+|+++..+++.+.+ +++|+|+.|++.++...++....+..++..+++.+.   ..+|+
T Consensus         2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~---~~~g~   78 (179)
T 1mjn_A            2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVK---HMLLL   78 (179)
T ss_dssp             CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCC---CCCBC
T ss_pred             CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcc---cCCCC
Confidence            57999999999999988999999999999999965 569999999999988877654333335566666554   23689


Q ss_pred             cchHHHHHHHHHH-Hhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----HHHHH
Q 007207          405 TNICAPLTKAVEM-LTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HYFLR  475 (613)
Q Consensus       405 T~l~~aL~~A~~~-l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----~~~L~  475 (613)
                      |+++.||..|.+. +..    +++..+.+||+|||.+++.....       +   ..++++|+||+|...+    ...|+
T Consensus        79 T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~~~-------~---~~~i~i~~igvG~~~~~~~~~~~L~  148 (179)
T 1mjn_A           79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID-------A---AKDIIRYIIGIGKHFQTKESQETLH  148 (179)
T ss_dssp             CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG-------G---GTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred             ChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcchH-------H---HCCCEEEEEEccccccccccHHHHH
Confidence            9999999999964 432    23456799999999987654211       1   2358999999998776    37899


Q ss_pred             HHHHhcCc-EEEEcCCCcHHHHHHHHHHHH
Q 007207          476 MLAMISRG-YYGAAYDLDSIEIQMQKLFTR  504 (613)
Q Consensus       476 ~lA~~~gG-~~~~v~~~~~l~~~l~~~~~~  504 (613)
                      .||..++| +++.+.+.++|...+.++.++
T Consensus       149 ~iA~~~~~~~~~~~~~~~~L~~i~~~i~~~  178 (179)
T 1mjn_A          149 KFASKPASEFVKILDTFEKLKDLCTELQKK  178 (179)
T ss_dssp             GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred             HHhCCccHhcEEEeCCHHHHHHHHHHHHhh
Confidence            99998877 467888888888877776554

>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}

Probab=99.77  E-value=3.4e-18  Score=161.83  Aligned_cols=145  Identities=19%  Similarity=0.206  Sum_probs=105.7

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeecccccc--CHHHHHHHHHHHhhcC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELA--TKEAVERAHQWIGINF  399 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~--~~~~~~~a~~~i~~~~  399 (613)
                      .+.+++||||.||||.+.+++.+|+++..+++.|.   .+++|+|+.|++.+....++....  +.+.+.++++.+.   
T Consensus        16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~---   92 (178)
T 2xgg_A           16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMP---   92 (178)
T ss_dssp             TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCC---
T ss_pred             CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCC---
Confidence            37999999999999998899999999999999986   358999999999998887776544  5566666665442   


Q ss_pred             CCCCCcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHH
Q 007207          400 IAGGSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFL  474 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L  474 (613)
                      ..+|+|++..||+.|.+.+..     +++..+.|||+|||.+++.......+. .+++   .+++||+||+|..+|..+|
T Consensus        93 ~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~-~l~~---~gi~v~~igvG~~~~~~~l  168 (178)
T 2xgg_A           93 YKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAK-EIRE---LGGIVTVLAVGHYVAAALV  168 (178)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHH-HHHH---TTCEEEEEECC--------
T ss_pred             CCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHH-HHHH---CCCEEEEEEcCCcCCHHHH
Confidence            368999999999999998642     234567999999999887644433333 3333   2489999999999999888


Q ss_pred             HH
Q 007207          475 RM  476 (613)
Q Consensus       475 ~~  476 (613)
                      +.
T Consensus       169 ~~  170 (178)
T 2xgg_A          169 PR  170 (178)
T ss_dssp             --
T ss_pred             hc
Confidence            75

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}

Probab=99.77  E-value=7.1e-21  Score=181.98  Aligned_cols=174  Identities=18%  Similarity=0.201  Sum_probs=126.0

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCeEEEEEeCC-cceeeeccccccCHHHHHHHHHHHhhcCC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL-DPGDSFNIVAFNG-ETYLFSTSMELATKEAVERAHQWIGINFI  400 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L-~~~d~~~Ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~~~~  400 (613)
                      +..+.+++||||+||||.+.+++.+|+++..++..+ .++++|+|+.|++ ......+.+.  +...   +.++|. .+.
T Consensus         2 ~~~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~--~~~~---~~~~i~-~l~   75 (189)
T 2x31_A            2 EMSDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSR--SLTQ---TKRQLQ-GLP   75 (189)
T ss_dssp             CSSCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCS--CHHH---HHHHHH-HCC
T ss_pred             CCCCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCC--CHHH---HHHHHh-cCC
Confidence            346899999999999999999999999999999887 8899999999997 5666656543  4444   444554 567


Q ss_pred             CCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchhHHH-------HHHHHHHHcCCCCCceEEEEEecCCCCH
Q 007207          401 AGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDERQIC-------DAMKSRLTNGGSICPRIYTFGIGSYCNH  471 (613)
Q Consensus       401 ~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~~~~-------~~~~~~~~~~~~~~~~i~tigiG~~~~~  471 (613)
                      ++|+|++..||..|++.+....  +..+.|||+|||.+++.....       ..+.+.++.....++++|+||+|.. +.
T Consensus        76 ~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~-~~  154 (189)
T 2x31_A           76 GGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR-PN  154 (189)
T ss_dssp             CCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS-SC
T ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC-CH
Confidence            8999999999999999987643  346799999999987532100       0000111111233478999999987 77


Q ss_pred             HHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHHHh
Q 007207          472 YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTRG  505 (613)
Q Consensus       472 ~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~~~  505 (613)
                      .+|+.||..++|.|+++.+  .-.+.+.++++.+
T Consensus       155 ~~L~~iA~~~~G~~~~~~~--~~~~~~~~~~~~~  186 (189)
T 2x31_A          155 PALVDLARTMDAHYIALPR--ATAHKMADVLGAA  186 (189)
T ss_dssp             SSSCSTTTEEEESSTTTHH--HHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCeEEECCC--cchHHHHHHHHHh
Confidence            8999999999999987743  2234455555543

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=99.76  E-value=1.8e-18  Score=190.90  Aligned_cols=181  Identities=17%  Similarity=0.192  Sum_probs=139.1

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhh
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGI  397 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~  397 (613)
                      +..+.|++||||.||||.+.+++.+|+++..+++.|   +++++|+|+.|++++....++...  .+.+.+.++++.+..
T Consensus         6 ~~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~   85 (509)
T 2odp_A            6 RSGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANY   85 (509)
T ss_dssp             SSSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCG
T ss_pred             CCCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhccc
Confidence            346789999999999999989999999999999888   789999999999999988776432  255666666664432


Q ss_pred             cCCC-CCCcchHHHHHHHHHHHhcCC-----------CCccEEEEEecCCcCch---hHHHHHHHHHHHc--CCCCCceE
Q 007207          398 NFIA-GGSTNICAPLTKAVEMLTNSR-----------GSIPIIFLVTDGAVEDE---RQICDAMKSRLTN--GGSICPRI  460 (613)
Q Consensus       398 ~~~~-~GgT~l~~aL~~A~~~l~~~~-----------~~~~~IillTDG~~~~~---~~~~~~~~~~~~~--~~~~~~~i  460 (613)
                      .... +|||++..||+.|.+++....           ...+.|||+|||..++.   ....+.+++.+..  ....+++|
T Consensus        86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i  165 (509)
T 2odp_A           86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDI  165 (509)
T ss_dssp             GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEE
T ss_pred             ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEE
Confidence            1111 499999999999999884311           23578999999998653   3334444443321  11345899


Q ss_pred             EEEEecCC-CCHHHHHHHHHhcCcE--EEEcCCCcHHHHHHHHHHH
Q 007207          461 YTFGIGSY-CNHYFLRMLAMISRGY--YGAAYDLDSIEIQMQKLFT  503 (613)
Q Consensus       461 ~tigiG~~-~~~~~L~~lA~~~gG~--~~~v~~~~~l~~~l~~~~~  503 (613)
                      |+||+|.+ .+...|+.||..++|.  ++.+.+.+++...+.+++.
T Consensus       166 ~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~  211 (509)
T 2odp_A          166 YAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD  211 (509)
T ss_dssp             EEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred             EEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhc
Confidence            99999998 9999999999999998  8899998888888777654

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=99.76  E-value=3.8e-18  Score=187.65  Aligned_cols=181  Identities=17%  Similarity=0.242  Sum_probs=140.1

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhhc-C
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGIN-F  399 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~-~  399 (613)
                      +.|++||||.||||.+.+++.+|+++..+++.+   +.+++|+|+.|++.+....++..+  .+.+.+.++++.+... .
T Consensus         1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~   80 (497)
T 1rrk_A            1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDH   80 (497)
T ss_dssp             CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGS
T ss_pred             CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccc
Confidence            468999999999999899999999999999865   457999999999998877643322  3567777777766421 1


Q ss_pred             CCCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCc---hhHHHHHHHHHH------HcCCCCCceEEE
Q 007207          400 IAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVED---ERQICDAMKSRL------TNGGSICPRIYT  462 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~---~~~~~~~~~~~~------~~~~~~~~~i~t  462 (613)
                      ..+|+|++..||..|.+.+...        ++..+.|||+|||..+.   .....+.+++..      .+....++++|+
T Consensus        81 ~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~  160 (497)
T 1rrk_A           81 KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV  160 (497)
T ss_dssp             CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEE
T ss_pred             cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEE
Confidence            2578999999999999998432        23467999999999874   333334443331      111223589999


Q ss_pred             EEecCCCCHHHHHHHHHhcCc--EEEEcCCCcHHHHHHHHHHHHhc
Q 007207          463 FGIGSYCNHYFLRMLAMISRG--YYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       463 igiG~~~~~~~L~~lA~~~gG--~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      ||+|...+...|+.||..++|  .|+.+.+.++|...+.+++++..
T Consensus       161 igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~  206 (497)
T 1rrk_A          161 FGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQ  206 (497)
T ss_dssp             EECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGG
T ss_pred             ecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCC
Confidence            999999999999999999999  99999999999999888776554

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.75  E-value=3.2e-18  Score=197.49  Aligned_cols=190  Identities=18%  Similarity=0.224  Sum_probs=143.6

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccc--cCHHHHHHHHHHHhh
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMEL--ATKEAVERAHQWIGI  397 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~--~~~~~~~~a~~~i~~  397 (613)
                      +..+.||+||||.||||.+.+++.+|+++..+++.|.   .++||+|+.|++++....++...  .+.+.+.++++.+..
T Consensus       240 ~~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~  319 (741)
T 3hrz_D          240 PSGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY  319 (741)
T ss_dssp             TTCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCG
T ss_pred             CCCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhccc
Confidence            3457899999999999999899999999999998875   46899999999999888776542  244444444443321


Q ss_pred             cC-CCCCCcchHHHHHHHHHHHhcC--------CCCccEEEEEecCCcCch---hHHHHHHHHHH------HcCCCCCce
Q 007207          398 NF-IAGGSTNICAPLTKAVEMLTNS--------RGSIPIIFLVTDGAVEDE---RQICDAMKSRL------TNGGSICPR  459 (613)
Q Consensus       398 ~~-~~~GgT~l~~aL~~A~~~l~~~--------~~~~~~IillTDG~~~~~---~~~~~~~~~~~------~~~~~~~~~  459 (613)
                      .. ..+|||+++.||..|++.+...        .+..+.|||||||..+..   ....+.+++..      +.....+++
T Consensus       320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~  399 (741)
T 3hrz_D          320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD  399 (741)
T ss_dssp             GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEE
T ss_pred             ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCee
Confidence            00 1789999999999999998321        123568999999987633   33333333321      123345689


Q ss_pred             EEEEEecCCCCHHHHHHHHHhcCcE--EEEcCCCcHHHHHHHHHHHHhccceeee
Q 007207          460 IYTFGIGSYCNHYFLRMLAMISRGY--YGAAYDLDSIEIQMQKLFTRGFSSVLAN  512 (613)
Q Consensus       460 i~tigiG~~~~~~~L~~lA~~~gG~--~~~v~~~~~l~~~l~~~~~~~~~p~l~~  512 (613)
                      ||+||+|.+.|...|+.||..++|.  ++.+.+.++|.+.+.+++++++...+..
T Consensus       400 i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~~~~~CG  454 (741)
T 3hrz_D          400 VYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCG  454 (741)
T ss_dssp             EEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSCTTSTT
T ss_pred             EEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhcccccccccc
Confidence            9999999999999999999999994  8889999999999999999876544433

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*

Probab=99.65  E-value=2.9e-17  Score=194.66  Aligned_cols=179  Identities=18%  Similarity=0.211  Sum_probs=139.3

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCC-CeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG-DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~-d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      +..+.||+||||.||||.+.+++.+|+++..+++.+.+. +||+|+.|++.++...++....+.+.+.++++.+.   ..
T Consensus       127 ~~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~---~~  203 (1095)
T 3k6s_A          127 PRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVH---QL  203 (1095)
T ss_dssp             CCCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCC---CC
T ss_pred             CCCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhh---cc
Confidence            345789999999999999989999999999999999864 89999999999998888765444445555555442   45


Q ss_pred             CCCcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcC-chhHHHHHHHHHHHcCCCCCceEEEEEecCC----CCH
Q 007207          402 GGSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVE-DERQICDAMKSRLTNGGSICPRIYTFGIGSY----CNH  471 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~-~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~----~~~  471 (613)
                      +|+|+++.||..|++.+..     +++..+.||++|||..+ +.......+++. ++   .++++|+||+|..    .+.
T Consensus       204 gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~-r~---~GI~i~aIGVG~~~~~~~d~  279 (1095)
T 3k6s_A          204 QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMA-DA---AGIIRYAIGVGLAFQNRNSW  279 (1095)
T ss_dssp             CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHH-HH---HCEEECCEEBSSGGGSTTSS
T ss_pred             cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHH-HH---CCCEEEEEecccccccccCH
Confidence            7999999999999886532     12346799999999985 433333333322 22   2489999999986    588


Q ss_pred             HHHHHHHHhcCc-EEEEcCCCcHHHHHHHHHHHHhccc
Q 007207          472 YFLRMLAMISRG-YYGAAYDLDSIEIQMQKLFTRGFSS  508 (613)
Q Consensus       472 ~~L~~lA~~~gG-~~~~v~~~~~l~~~l~~~~~~~~~p  508 (613)
                      ..|+.||..++| +++.+.+.++|...+.++.++++..
T Consensus       280 ~eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~Ic~i  317 (1095)
T 3k6s_A          280 KELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAI  317 (1095)
T ss_dssp             HHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHHHTC
T ss_pred             HHHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhhhcc
Confidence            999999998876 7778888899988888888877654

>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}

Probab=99.61  E-value=2.2e-14  Score=137.02  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=112.5

Q ss_pred             ceEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCc-ceeeeccccccCHHHHHHHHHHHhh
Q 007207          327 KDVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGE-TYLFSTSMELATKEAVERAHQWIGI  397 (613)
Q Consensus       327 ~~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~-~~~~~~~~~~~~~~~~~~a~~~i~~  397 (613)
                      ..++|+||.|+||..     .|++.+|.++..|+..   .+++++++|++|+++ ++...|.+.  +...+..+++    
T Consensus         3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~--d~~~i~~~L~----   76 (192)
T 2x5n_A            3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTR--DYGKFLSAMH----   76 (192)
T ss_dssp             EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEES--CHHHHHHHHT----
T ss_pred             eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCC--CHHHHHHHHH----
Confidence            568999999999974     4899999999887754   367899999999994 888777764  6665555554    


Q ss_pred             cCCCCCCcchHHHHHHHHHHHhcCCC---CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC-CHHH
Q 007207          398 NFIAGGSTNICAPLTKAVEMLTNSRG---SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC-NHYF  473 (613)
Q Consensus       398 ~~~~~GgT~l~~aL~~A~~~l~~~~~---~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~-~~~~  473 (613)
                      .+.++|+|++..||..|.+.+.....   ..+.||+++|+...++.+..+.++ .+++   .+++|++||+|... +.. 
T Consensus        77 ~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~-~lk~---~gi~v~~Ig~G~~~~~~~-  151 (192)
T 2x5n_A           77 DLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAK-RMKK---NNVAIDIIHIGELQNESA-  151 (192)
T ss_dssp             TCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHH-HHHH---TTEEEEEEEESCC---CH-
T ss_pred             cCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHH-HHHH---CCCEEEEEEeCCCCccHH-
Confidence            46778999999999999999986542   223466666665444444444433 3333   34999999999764 436 


Q ss_pred             HHHHHHhc----CcEEEEcCCCc
Q 007207          474 LRMLAMIS----RGYYGAAYDLD  492 (613)
Q Consensus       474 L~~lA~~~----gG~~~~v~~~~  492 (613)
                      |+.+|+.+    +++|+.+....
T Consensus       152 l~~la~~~n~~~~s~~~~~~~~~  174 (192)
T 2x5n_A          152 LQHFIDAANSSDSCHLVSIPPSP  174 (192)
T ss_dssp             HHHHHHHHCSTTCCEEEEECCCS
T ss_pred             HHHHHHhccCCCceEEEEecCcc
Confidence            99999983    45677666665

>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.8e-14  Score=143.36  Aligned_cols=146  Identities=12%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             eEEEEEeCCCCCCC-----CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcc-eeeeccccccCHHHHHHHHHHHhhc
Q 007207          328 DVIFIVDISGSMQG-----KPLEDTKNALAVALSK---LDPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGIN  398 (613)
Q Consensus       328 ~vvfviD~SgSM~g-----~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~~  398 (613)
                      .++||||+|+||..     .|++.+|.++..+++.   +++.++++||+|.+.. .++.+.+.  +...+..+++    .
T Consensus         5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~--D~~~il~aL~----~   78 (268)
T 4b4t_W            5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTA--EFGKILAGLH----D   78 (268)
T ss_dssp             EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEES--CHHHHHHHHT----T
T ss_pred             eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcc--hHHHHHHHhh----h
Confidence            37999999999974     4899999999998874   5689999999997764 55555543  6665555554    6


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCch-hHHHHHHHHHHHcCCCCCceEEEEEecC-CCCHHHH
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDE-RQICDAMKSRLTNGGSICPRIYTFGIGS-YCNHYFL  474 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~-~~~~~~~~~~~~~~~~~~~~i~tigiG~-~~~~~~L  474 (613)
                      +.++|+|++..||+.|+..+....  .....||++|||..++. .++...+++..+    .+++|++||||. +.|...|
T Consensus        79 l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk----~gI~v~vIgFG~~~~n~~kL  154 (268)
T 4b4t_W           79 TQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKK----NNVAVDIINFGEIEQNTELL  154 (268)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHH----HTEEEEEEEESSCCSSCCHH
T ss_pred             cCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHH----cCCEEEEEEeCCCccchHHH
Confidence            789999999999999999997653  34568999999976543 444444444433    248999999995 4577899


Q ss_pred             HHHHHhcCc
Q 007207          475 RMLAMISRG  483 (613)
Q Consensus       475 ~~lA~~~gG  483 (613)
                      +.+++..+|
T Consensus       155 e~l~~~~Ng  163 (268)
T 4b4t_W          155 DEFIAAVNN  163 (268)
T ss_dssp             HHHHHHHCS
T ss_pred             HHHHHHhcC
Confidence            999887655

>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}

Probab=99.49  E-value=1.2e-13  Score=159.38  Aligned_cols=115  Identities=23%  Similarity=0.246  Sum_probs=87.0

Q ss_pred             CCCCceEEEEEeCCCCCCCC------cHHHHHHHHHHHHHhCC--CCCeEEEEEeCCccee------eec----------
Q 007207          323 KVFKKDVIFIVDISGSMQGK------PLEDTKNALAVALSKLD--PGDSFNIVAFNGETYL------FST----------  378 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~------~~~~ak~al~~~l~~L~--~~d~~~Ii~F~~~~~~------~~~----------  378 (613)
                      ...+.+|+||||.||||.+.      |++.+|+++..+++.|.  +++||+||.|++++..      ..+          
T Consensus       221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n  300 (893)
T 2ww8_A          221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN  300 (893)
T ss_dssp             TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred             cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence            46789999999999999986      47889999999998774  5899999999987532      000          


Q ss_pred             -----------c----------ccccCHHHHHHHHHHHhh---------cCCCCCCcchHHHHHHHHHHHhc-C-CCCcc
Q 007207          379 -----------S----------MELATKEAVERAHQWIGI---------NFIAGGSTNICAPLTKAVEMLTN-S-RGSIP  426 (613)
Q Consensus       379 -----------~----------~~~~~~~~~~~a~~~i~~---------~~~~~GgT~l~~aL~~A~~~l~~-~-~~~~~  426 (613)
                                 .          ....+..++..+.+.|..         .+.++|||++..||..|+++|.. . +...+
T Consensus       301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~k  380 (893)
T 2ww8_A          301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQK  380 (893)
T ss_dssp             CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEE
T ss_pred             cccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCe
Confidence                       0          001245566666666641         13458999999999999999973 2 35678


Q ss_pred             EEEEEecCCcC
Q 007207          427 IIFLVTDGAVE  437 (613)
Q Consensus       427 ~IillTDG~~~  437 (613)
                      .|||||||.++
T Consensus       381 vIILLTDG~pt  391 (893)
T 2ww8_A          381 VIFHITDGVPT  391 (893)
T ss_dssp             EEEEEESSCCS
T ss_pred             EEEEEcCCCCC
Confidence            99999999975

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A

Probab=99.30  E-value=6e-12  Score=139.27  Aligned_cols=135  Identities=19%  Similarity=0.210  Sum_probs=90.6

Q ss_pred             CCCCceEEEEEeCCCCCCC----CcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhc
Q 007207          323 KVFKKDVIFIVDISGSMQG----KPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGIN  398 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g----~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~  398 (613)
                      +..+.+++|+||+||||.+    .++...+.++...+..+.++|+++|+.|++.... .+.+.  + ..+.++++.+. .
T Consensus       365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~-~~~t~--~-~~l~~~l~~l~-~  439 (538)
T 1yvr_A          365 EPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLP-CPITV--N-MLLHEVVEKMS-D  439 (538)
T ss_dssp             CCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEEC-CSCCT--T-SCHHHHHHHHT-T
T ss_pred             CCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceE-cCCCC--c-ccHHHHHHHHh-c
Confidence            3467899999999999985    3455533333333344567899999999984332 23322  2 23778888886 3


Q ss_pred             CCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCC
Q 007207          399 FIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSY  468 (613)
Q Consensus       399 ~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~  468 (613)
                      + ++|||+++.+|..|++.    ......|||+|||..+.+. ...+.+.+..++.+ ..+++|+||+|+.
T Consensus       440 ~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~-~~v~l~~igig~~  504 (538)
T 1yvr_A          440 I-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKMG-IPAKLIVCAMTSN  504 (538)
T ss_dssp             C-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHT-CCCEEEEEECSSS
T ss_pred             C-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhC-CCcEEEEEEecCC
Confidence            3 78999999999999876    2345789999999876432 23333333222212 3478899999974

>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*

Probab=99.26  E-value=2e-11  Score=135.67  Aligned_cols=156  Identities=13%  Similarity=0.158  Sum_probs=109.6

Q ss_pred             ceEEEEEeCCCCCCC------CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce--------------eeecccccc
Q 007207          327 KDVIFIVDISGSMQG------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY--------------LFSTSMELA  383 (613)
Q Consensus       327 ~~vvfviD~SgSM~g------~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~--------------~~~~~~~~~  383 (613)
                      ..++|+||+|+||..      .+++.+++++..++.+   .+++|+++||.|+++..              .+.++ ...
T Consensus         8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l-~~~   86 (565)
T 1jey_B            8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHL-MLP   86 (565)
T ss_dssp             EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEE-ECC
T ss_pred             eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecC-CCC
Confidence            679999999999974      5899999999999984   68899999999998762              11222 112


Q ss_pred             CHHHHHHHHHHHhhcCCCC-CCcchHHHHHHHHHHHhcC--CC--CccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCc
Q 007207          384 TKEAVERAHQWIGINFIAG-GSTNICAPLTKAVEMLTNS--RG--SIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICP  458 (613)
Q Consensus       384 ~~~~~~~a~~~i~~~~~~~-GgT~l~~aL~~A~~~l~~~--~~--~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~  458 (613)
                      +...+    ..|...+.++ ++|++..||..|.+++...  ..  ..+.|||+|||..+.+......+.+.+++   .++
T Consensus        87 ~~~~l----~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~---~gI  159 (565)
T 1jey_B           87 DFDLL----EDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKK---CDI  159 (565)
T ss_dssp             CHHHH----HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHH---TTE
T ss_pred             CHHHH----HHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHh---cCc
Confidence            33333    2333224444 7899999999999999764  22  35799999999865322222333333333   348


Q ss_pred             eEE-EEEecCC--------------------------------CCHHHHHHHHHhcCc-----EEEEcCC
Q 007207          459 RIY-TFGIGSY--------------------------------CNHYFLRMLAMISRG-----YYGAAYD  490 (613)
Q Consensus       459 ~i~-tigiG~~--------------------------------~~~~~L~~lA~~~gG-----~~~~v~~  490 (613)
                      +|+ +||+|.+                                .|..+|+.||..++|     .|+.+.+
T Consensus       160 ~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~  229 (565)
T 1jey_B          160 SLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE  229 (565)
T ss_dssp             EEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred             EEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence            999 8888753                                124569999999999     8887654

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}

Probab=99.03  E-value=3e-10  Score=125.23  Aligned_cols=151  Identities=17%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             CCCceEEEEEeCCCCCCC-C-----cHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhh
Q 007207          324 VFKKDVIFIVDISGSMQG-K-----PLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGI  397 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g-~-----~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~  397 (613)
                      ..+.+++++||+||||.+ .     ++..+..++...+-.+..+++++|+.|++..... +.+.   ...+.++++.+. 
T Consensus       360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~~~~---~~~l~~~l~~l~-  434 (535)
T 2nvo_A          360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-GITP---RDTLESAMQKAQ-  434 (535)
T ss_dssp             CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-CCCT---TCCHHHHHHHTC-
T ss_pred             CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-CCCc---chhHHHHHHHHh-
Confidence            467899999999999986 2     2333333332233345568899999999854332 2221   245667777775 


Q ss_pred             cCCCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCC--------
Q 007207          398 NFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSY--------  468 (613)
Q Consensus       398 ~~~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~--------  468 (613)
                      .. .+|||++..+|..+.+.    ......|||+|||+.+... ...+.+....+. ...++++++||+|..        
T Consensus       435 ~~-~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~-~~~~~klv~i~l~~~~~~~~~~~  508 (535)
T 2nvo_A          435 SV-SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWAGQVHPTVALDQYAQK-MGRAPKLIVVGLTATEFSIADPQ  508 (535)
T ss_dssp             CS-SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCCCSSCHHHHHHHHHHH-HSCCCEEEEEETTCSCCCCSCTT
T ss_pred             hC-CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccCCCCCHHHHHHHHHHh-hCCCCeEEEEeccCCCcccCCCC
Confidence            32 37999999999887654    2345789999999876432 223333333322 123489999999863        


Q ss_pred             ---------CCHHHHHHHHHhcCcEE
Q 007207          469 ---------CNHYFLRMLAMISRGYY  485 (613)
Q Consensus       469 ---------~~~~~L~~lA~~~gG~~  485 (613)
                               .+...|+.||+.++|.|
T Consensus       509 ~~~~~~i~g~se~~l~~Ia~~~~G~~  534 (535)
T 2nvo_A          509 RRDMLDVVGFDAAAPNVMTAFARGEV  534 (535)
T ss_dssp             CSSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred             CCCceeeeCCCHHHHHHHHHHhCCCc
Confidence                     23456777777777765

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}

Probab=98.90  E-value=1.2e-09  Score=106.05  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=69.8

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcc---e-eeeccccccCHHHHHHHHHHHh
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGET---Y-LFSTSMELATKEAVERAHQWIG  396 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~---~-~~~~~~~~~~~~~~~~a~~~i~  396 (613)
                      ..+.+++||||+||||. .++..+|.++..++..+.   ..++|+||.|+++.   . .+.+++...   .+...+.   
T Consensus       132 ~~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~---~~~~~l~---  204 (242)
T 3rag_A          132 EVALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV---NVAALEA---  204 (242)
T ss_dssp             HSCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC---CHHHHHH---
T ss_pred             cCCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH---HHHHHHh---
Confidence            46799999999999998 489999999999998764   47899999999975   2 222544321   3333333   


Q ss_pred             hcCCCCCCcchHHHHHHHHHHHhc
Q 007207          397 INFIAGGSTNICAPLTKAVEMLTN  420 (613)
Q Consensus       397 ~~~~~~GgT~l~~aL~~A~~~l~~  420 (613)
                       .+.++|+|+++.||..|++++.+
T Consensus       205 -~L~agG~Tplg~AL~~A~~~~~~  227 (242)
T 3rag_A          205 -ELVARGGTPTGPAIDHAADLLLS  227 (242)
T ss_dssp             -HCCCCSCCCHHHHHHHHHHHHHH
T ss_pred             -hCCCCCCCcHHHHHHHHHHHHHH
Confidence             56789999999999999998853

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B

Probab=98.89  E-value=8.6e-09  Score=115.33  Aligned_cols=139  Identities=14%  Similarity=0.148  Sum_probs=95.1

Q ss_pred             Cce-EEEEEeCCCCCCC-------CcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCcce----------eeeccccccC
Q 007207          326 KKD-VIFIVDISGSMQG-------KPLEDTKNALAVALSK---LDPGDSFNIVAFNGETY----------LFSTSMELAT  384 (613)
Q Consensus       326 ~~~-vvfviD~SgSM~g-------~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~----------~~~~~~~~~~  384 (613)
                      .++ ++|+||+|+||..       .+++.+++++..++.+   -+++|++|||.|+++..          .+.++. ..+
T Consensus        34 ~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~-~~~  112 (609)
T 1jey_A           34 GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELD-NPG  112 (609)
T ss_dssp             CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEE-CCC
T ss_pred             CceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCC-CCC
Confidence            345 9999999999975       3799999999999986   36789999999999872          333432 234


Q ss_pred             HHHHHHHHHHHh--------hcCCCCCCcchHHHHHHHHHHHhcCCC--CccEEEEEecCCcCchhH-----HHHHHHHH
Q 007207          385 KEAVERAHQWIG--------INFIAGGSTNICAPLTKAVEMLTNSRG--SIPIIFLVTDGAVEDERQ-----ICDAMKSR  449 (613)
Q Consensus       385 ~~~~~~a~~~i~--------~~~~~~GgT~l~~aL~~A~~~l~~~~~--~~~~IillTDG~~~~~~~-----~~~~~~~~  449 (613)
                      ...+....+.+.        .....+.+|++..||..|.+++.....  ..+.|||||||....+..     ....+.+.
T Consensus       113 ~~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~  192 (609)
T 1jey_A          113 AKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGD  192 (609)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHH
Confidence            444443333221        001224689999999999999986532  367999999998643221     22223333


Q ss_pred             HHcCCCCCceEEEEEecCC
Q 007207          450 LTNGGSICPRIYTFGIGSY  468 (613)
Q Consensus       450 ~~~~~~~~~~i~tigiG~~  468 (613)
                      +..   .+++|++||+|..
T Consensus       193 l~~---~gI~i~~igig~~  208 (609)
T 1jey_A          193 LRD---TGIFLDLMHLKKP  208 (609)
T ss_dssp             HHH---HTEEEEEEEBCCT
T ss_pred             HHh---cCcEEEEEecCCC
Confidence            333   3499999999965

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=98.39  E-value=0.00011  Score=84.56  Aligned_cols=234  Identities=13%  Similarity=0.099  Sum_probs=140.3

Q ss_pred             EEecCCCCCCCCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeee--cccc-----
Q 007207          313 YLLPGTAKSRKVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFS--TSME-----  381 (613)
Q Consensus       313 ~~~P~~~~~~~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~--~~~~-----  381 (613)
                      ++.|.+.......|--++||||+|.++-.. -++.+++++...|+.|++   +.+|++|+|++..+.+.  ....     
T Consensus       174 y~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~  253 (810)
T 1pcx_A          174 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES  253 (810)
T ss_dssp             EECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC----
T ss_pred             EEcCchhccCCCCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCcccc
Confidence            444543323345678899999999877322 377899999999999986   57999999999875541  1000     


Q ss_pred             ---------------------------ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEe
Q 007207          382 ---------------------------LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVT  432 (613)
Q Consensus       382 ---------------------------~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillT  432 (613)
                                                 .-....+..+++.|....  ...+.+.++.||+.|..++....   ..|++++
T Consensus       254 ~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~G---GrI~~F~  330 (810)
T 1pcx_A          254 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---GKIIVVS  330 (810)
T ss_dssp             ---CEEECCCCTTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC---EEEEEEE
T ss_pred             ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhcC---CEEEEEe
Confidence                                       012456667777766322  23578889999999999997532   3688899


Q ss_pred             cCCcCchhH--------------------------HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEE
Q 007207          433 DGAVEDERQ--------------------------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYG  486 (613)
Q Consensus       433 DG~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~  486 (613)
                      +|.++.+..                          ..+.+...+.+. ...+.+|.++ +..++-..|..+++.|||..+
T Consensus       331 sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~-gi~VDlF~~s-~~~~dla~l~~l~~~TGG~v~  408 (810)
T 1pcx_A          331 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKV-QITVDLFLAS-EDYMDVASLSNLSRFTAGQTH  408 (810)
T ss_dssp             SSCCCSSTTCCCC--------------------CCHHHHHHHHHHHT-TEEEEEEEEE-SSCCCHHHHHHHHHTTTCCEE
T ss_pred             cCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHHHC-CeEEEEEEcc-CCccChHHHHHHHhcCCcEEE
Confidence            987642100                          011222222222 2334555554 345788999999999999987


Q ss_pred             EcCCCcHH--HH--HHHH-HHHHhccceeeeE--EEEecCCCCceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 007207          487 AAYDLDSI--EI--QMQK-LFTRGFSSVLANI--AIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF  550 (613)
Q Consensus       487 ~v~~~~~l--~~--~l~~-~~~~~~~p~l~~i--~l~~~~~~~~~~v~p---------~~ip~l~~g~~~~v~g~~~~~~  550 (613)
                      +..+...-  .+  +|.+ +.+.+..+...+.  +++...++.....+-         -.++.+.....+.+.-.+.++.
T Consensus       409 ~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l  488 (810)
T 1pcx_A          409 FYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESI  488 (810)
T ss_dssp             EEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCC
T ss_pred             EcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCC
Confidence            76665321  11  2332 2223333333333  344334332211111         1346677778888888877654


Q ss_pred             C
Q 007207          551 P  551 (613)
Q Consensus       551 ~  551 (613)
                      +
T Consensus       489 ~  489 (810)
T 1pcx_A          489 M  489 (810)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=98.32  E-value=0.00011  Score=84.15  Aligned_cols=175  Identities=13%  Similarity=0.136  Sum_probs=111.9

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccc-----------------------
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM-----------------------  380 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~-----------------------  380 (613)
                      +.|.-++||||+|.+.  ..++.++++++..|+.|+++.+|+||+|++.++.+.-..                       
T Consensus       130 p~pp~~vFvIDvS~~a--~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m  207 (769)
T 2nut_A          130 QMPLIFLYVVDTCMED--EDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM  207 (769)
T ss_dssp             CCCCEEEEEEECCSCH--HHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred             CCCCEEEEEEECCccH--HHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence            4577899999999884  468999999999999999999999999999876531000                       


Q ss_pred             ccc-----------------------------CHHHHHHHHHHHhhcC-----CCCCCcchHHHHHHHHHHHhcC-CCCc
Q 007207          381 ELA-----------------------------TKEAVERAHQWIGINF-----IAGGSTNICAPLTKAVEMLTNS-RGSI  425 (613)
Q Consensus       381 ~~~-----------------------------~~~~~~~a~~~i~~~~-----~~~GgT~l~~aL~~A~~~l~~~-~~~~  425 (613)
                      ...                             ....+..+++.|....     ...+.+.++.||..|..++... ++..
T Consensus       208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~G  287 (769)
T 2nut_A          208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTG  287 (769)
T ss_dssp             HC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred             hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCC
Confidence            000                             1123444555544211     1256789999999999999731 1223


Q ss_pred             cEEEEEecCCcCchh--------------------H----------HHHHHHHHHHcCCCCCceEEEEEec-CCCCHHHH
Q 007207          426 PIIFLVTDGAVEDER--------------------Q----------ICDAMKSRLTNGGSICPRIYTFGIG-SYCNHYFL  474 (613)
Q Consensus       426 ~~IillTDG~~~~~~--------------------~----------~~~~~~~~~~~~~~~~~~i~tigiG-~~~~~~~L  474 (613)
                      ..|++++.|.++.+.                    +          ..+.+...+.+.   ++.|..|.++ ..++-..|
T Consensus       288 GrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~---gi~VDlF~~~~~~vdla~l  364 (769)
T 2nut_A          288 ARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATT---GHVIDIYACALDQTGLLEM  364 (769)
T ss_dssp             CEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH---TCEEEEEEECSSCCCHHHH
T ss_pred             cEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHC---CeEEEEEeccCCccChHHH
Confidence            468888888764110                    0          011122222222   2445555554 45788999


Q ss_pred             HHHHHhcCcEEEEcCCCc--HHHHHHHHHHH
Q 007207          475 RMLAMISRGYYGAAYDLD--SIEIQMQKLFT  503 (613)
Q Consensus       475 ~~lA~~~gG~~~~v~~~~--~l~~~l~~~~~  503 (613)
                      +.+++.|||..++..+..  .+.+.+.+.+.
T Consensus       365 ~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~  395 (769)
T 2nut_A          365 KCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT  395 (769)
T ss_dssp             THHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred             HHHhhcCCceEEEcCCCchhhHHHHHHHHHh
Confidence            999999999988877654  34444444443

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}

Probab=98.27  E-value=2.1e-06  Score=83.21  Aligned_cols=78  Identities=15%  Similarity=0.098  Sum_probs=55.9

Q ss_pred             CCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC-----CCHHHHHHHHHhcCcEEEEcCCCcHHHHH
Q 007207          423 GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY-----CNHYFLRMLAMISRGYYGAAYDLDSIEIQ  497 (613)
Q Consensus       423 ~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~-----~~~~~L~~lA~~~gG~~~~v~~~~~l~~~  497 (613)
                      +..+.|||+|||..+.+.......+. +++   .+++||+||+|+.     .+...|+.||..|||.|+.+.. .++.+.
T Consensus         8 ~~~k~iillTDG~~~~g~~p~~aa~~-a~~---~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l~~~   82 (242)
T 3rag_A            8 ATIRQILVITDGCSNIGPDPVEAARR-AHR---HGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADISAT   82 (242)
T ss_dssp             CCEEEEEEEESSCCCSSSCHHHHHHH-HHH---TTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGHHHH
T ss_pred             CCccEEEEEccCCCCCCCCHHHHHHH-HHH---CCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence            45689999999998754444444433 333   2489999999753     2357899999999999999854 777766


Q ss_pred             HHHHHHHh
Q 007207          498 MQKLFTRG  505 (613)
Q Consensus       498 l~~~~~~~  505 (613)
                      ++.+.++.
T Consensus        83 ~~~~t~~~   90 (242)
T 3rag_A           83 AQMMTHQT   90 (242)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65555444

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=98.18  E-value=0.0003  Score=81.48  Aligned_cols=175  Identities=15%  Similarity=0.134  Sum_probs=114.2

Q ss_pred             EEecCCCCCCCCCCceEEEEEeCCCCCCCC-cHHHHHHHHHHHHHhCCC---CCeEEEEEeCCcceeee--cc-------
Q 007207          313 YLLPGTAKSRKVFKKDVIFIVDISGSMQGK-PLEDTKNALAVALSKLDP---GDSFNIVAFNGETYLFS--TS-------  379 (613)
Q Consensus       313 ~~~P~~~~~~~~~~~~vvfviD~SgSM~g~-~~~~ak~al~~~l~~L~~---~d~~~Ii~F~~~~~~~~--~~-------  379 (613)
                      ++.|.+.......|--++||||+|.+.-.. -++.+++++...|+.|++   +.+|+||+|++....+.  ..       
T Consensus       290 yi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~  369 (926)
T 1m2v_B          290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEES  369 (926)
T ss_dssp             EECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-------
T ss_pred             EEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCccc
Confidence            445544323345678899999999876323 377899999999999986   57999999998765431  00       


Q ss_pred             -----------------------cc--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEe
Q 007207          380 -----------------------ME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVT  432 (613)
Q Consensus       380 -----------------------~~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillT  432 (613)
                                             ..  .-....+..+++.|....  .....+.++.||+.|..++....   ..|++++
T Consensus       370 ~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~G---GrI~~F~  446 (926)
T 1m2v_B          370 ADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---GKIIVVS  446 (926)
T ss_dssp             --CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTTC---EEEEEEE
T ss_pred             ccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhhC---CEEEEEe
Confidence                                   00  013566777777776322  23567889999999999997532   3688888


Q ss_pred             cCCcCchh----------------H----------HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEE
Q 007207          433 DGAVEDER----------------Q----------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYG  486 (613)
Q Consensus       433 DG~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~  486 (613)
                      .|.++.+.                +          ..+.+...+.+. ...+.+|.++. ..++-..|..+++.|||..+
T Consensus       447 sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~-gisVDlF~~s~-~~vdla~l~~l~~~TGG~v~  524 (926)
T 1m2v_B          447 GTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKV-QITVDLFLASE-DYMDVASLSNLSRFTAGQTH  524 (926)
T ss_dssp             SSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHH-TEEEEEEEEES-SCCCHHHHHHHHHTTTCCEE
T ss_pred             cCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHc-CeEEEEEEccC-CCcChHHHHHHHhcCCceEE
Confidence            88764110                0          112222222221 23355666553 45788999999999999987


Q ss_pred             EcCCCc
Q 007207          487 AAYDLD  492 (613)
Q Consensus       487 ~v~~~~  492 (613)
                      +..+..
T Consensus       525 ~y~~F~  530 (926)
T 1m2v_B          525 FYPGFS  530 (926)
T ss_dssp             EEESCC
T ss_pred             EcCCCc
Confidence            766553

>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}

Probab=98.17  E-value=1.1e-05  Score=76.96  Aligned_cols=105  Identities=16%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcc-eeeeccccccCHHHHHHHHHHHhhcCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGET-YLFSTSMELATKEAVERAHQWIGINFI  400 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~-~~~~~~~~~~~~~~~~~a~~~i~~~~~  400 (613)
                      .|.|++||+|.|+||.. .++.+|+.+..+.+.|   ..+-||++..|.+.. +...+++.  +.....+.++    ...
T Consensus         2 ~pvDl~fl~D~S~SM~~-di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~--d~~~F~~~v~----~~~   74 (212)
T 2iue_A            2 NSVDLYFLMGLSGSAQG-HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTA--DSSQFQRELR----KQL   74 (212)
T ss_dssp             CCEEEEEEEECCGGGTT-THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEES--CHHHHHHHHH----TCC
T ss_pred             CceEEEEEEeCCCcchh-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCC--CHHHHHHHHh----hcc
Confidence            47899999999999976 5999999888877655   457899999998873 22334433  5555555554    455


Q ss_pred             CCCCcc----hHHHHHHHH---HHHhcCCCCccEEEEEecCCcC
Q 007207          401 AGGSTN----ICAPLTKAV---EMLTNSRGSIPIIFLVTDGAVE  437 (613)
Q Consensus       401 ~~GgT~----l~~aL~~A~---~~l~~~~~~~~~IillTDG~~~  437 (613)
                      ..||-+    -..||..|+   +.+.-++ ..+.+||+||+.+.
T Consensus        75 vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H  117 (212)
T 2iue_A           75 VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFH  117 (212)
T ss_dssp             CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBC
T ss_pred             ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcc
Confidence            555433    244555554   2232233 67899999999874

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=98.16  E-value=0.00058  Score=77.66  Aligned_cols=175  Identities=11%  Similarity=0.136  Sum_probs=110.8

Q ss_pred             EEecCCCCCCCCCCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEeCCcceeee------------
Q 007207          313 YLLPGTAKSRKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPGD--SFNIVAFNGETYLFS------------  377 (613)
Q Consensus       313 ~~~P~~~~~~~~~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~~~d--~~~Ii~F~~~~~~~~------------  377 (613)
                      ++.|.+....++.|-.++||||+|-. +...-++.+++++...|+.|+++.  +|++|+|++..+.+.            
T Consensus       147 y~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlv  226 (751)
T 3eh1_A          147 FIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLI  226 (751)
T ss_dssp             EEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEE
T ss_pred             EEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeec
Confidence            34454332234568889999999842 322347888999999999998755  899999999754311            


Q ss_pred             ---------ccc----c--ccCHHHHHHHHHHHhhcCC--CCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh
Q 007207          378 ---------TSM----E--LATKEAVERAHQWIGINFI--AGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER  440 (613)
Q Consensus       378 ---------~~~----~--~~~~~~~~~a~~~i~~~~~--~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~  440 (613)
                               |..    .  .-....+..+++.|.....  ....+.++.||+.|..++....   ..|++++.|.++-+.
T Consensus       227 v~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~G---GrI~~F~sg~pt~Gp  303 (751)
T 3eh1_A          227 VSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTG---GRVSVFQTQLPSLGA  303 (751)
T ss_dssp             ESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTC---EEEEEEECSCCCSST
T ss_pred             cccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcCC---CEEEEEecCCCCCCC
Confidence                     100    0  1245677788887753221  1245678999999999987532   357777777654210


Q ss_pred             -------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCc
Q 007207          441 -------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       441 -------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~  492 (613)
                                               ...+.+...+.+. ...+.+|.++ ...++-..|..+++.|||..++..+..
T Consensus       304 G~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~-~i~VDlF~~s-~~~~dlatl~~l~~~TGG~v~~y~~F~  378 (751)
T 3eh1_A          304 GLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQ-QTAVDLFLLS-SQYSDLASLACMSKYSAGCIYYYPSFH  378 (751)
T ss_dssp             TCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHT-TEEEEEEECC-SSCCCHHHHTHHHHTTTCCEEECTTCB
T ss_pred             CccccccccccCCCchhhhhhcchHHHHHHHHHHHHhc-CceEEEEEcc-CcccChHhHHHHHhhcCceEEEeCCcc
Confidence                                     1123333333222 2234454443 245788899999999999988876654

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.04  E-value=5.7e-05  Score=84.82  Aligned_cols=185  Identities=15%  Similarity=0.147  Sum_probs=109.8

Q ss_pred             ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHh---CCCCCeEEEEEeCCccee---------
Q 007207          308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSK---LDPGDSFNIVAFNGETYL---------  375 (613)
Q Consensus       308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~---L~~~d~~~Ii~F~~~~~~---------  375 (613)
                      -.|.+.+.+..     ..|.|++||+|.|+||.. .++.+|+....+++.   +..+-||++..|.+....         
T Consensus        98 ~~f~~~~~~~~-----~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~  171 (690)
T 3fcs_B           98 KNFSIQVRQVE-----DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE  171 (690)
T ss_dssp             EEEEEEEECCB-----TCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTT
T ss_pred             EEEEEEEeccC-----CCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhh
Confidence            35666666543     367999999999999974 577777776666544   456789999999884311         


Q ss_pred             ---------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcc----hHHHHHHHH---HHHhcCCCCccE
Q 007207          376 ---------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPI  427 (613)
Q Consensus       376 ---------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~----l~~aL~~A~---~~l~~~~~~~~~  427 (613)
                                           ..+++  .+..   +..+.|+ .....|+-+    -.+||..|+   +.+.-+++..+.
T Consensus       172 ~~~~pc~~~~~~c~~~f~f~~~l~lt--~~~~---~f~~~v~-~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rl  245 (690)
T 3fcs_B          172 ALENPCYDMKTTCLPMFGYKHVLTLT--DQVT---RFNEEVK-KQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL  245 (690)
T ss_dssp             TTTCTTSSSSSCCCCCCSEEEEEEEE--SCHH---HHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEE
T ss_pred             hccCCCcCCCCCCCCCccceeecccC--CCHH---HHHHHhh-ceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEE
Confidence                                 01111  2334   4445554 455555543    355665555   444334456789


Q ss_pred             EEEEecCCcC---chh-----------------------H-----HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          428 IFLVTDGAVE---DER-----------------------Q-----ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       428 IillTDG~~~---~~~-----------------------~-----~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      |||+||....   ++.                       .     .+..+.+.+.+.+ + ..||++--   ......+.
T Consensus       246 lv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~-i-~~ifavt~---~~~~~y~~  320 (690)
T 3fcs_B          246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN-I-NLIFAVTE---NVVNLYQN  320 (690)
T ss_dssp             EEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTT-C-EEEEEEEG---GGHHHHHH
T ss_pred             EEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHHHcC-C-eEEEEEeC---CchhhHHH
Confidence            9999998754   100                       0     1334444444332 1 33555522   23445566


Q ss_pred             HHHhcCcE-EEEc-CCCcHHHHHHHHHHHHhccce
Q 007207          477 LAMISRGY-YGAA-YDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       477 lA~~~gG~-~~~v-~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      |+..-.|. .-.+ .|...+.+.+...++++.+.+
T Consensus       321 l~~~i~~s~v~~l~~dSsni~~li~~~y~~i~s~v  355 (690)
T 3fcs_B          321 YSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKV  355 (690)
T ss_dssp             HHHHSTTCEEEEECTTCTTHHHHHHHHHHHHTTCE
T ss_pred             HHhhcCCceeeeeccccHHHHHHHHHHHHhhhcce
Confidence            66554444 3332 455678888888888887654

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=97.77  E-value=0.0028  Score=72.47  Aligned_cols=166  Identities=13%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             CCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccc------------ccc-------
Q 007207          323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM------------ELA-------  383 (613)
Q Consensus       323 ~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~------------~~~-------  383 (613)
                      ...|--++||||+|.+..  .++.+++++...|+.|+++.+|++|+|++..+.+.-..            ..+       
T Consensus       118 ~~~pp~~vFvIDvs~~~~--~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~  195 (768)
T 1m2o_A          118 VTVPPIFFFVVDLTSETE--NLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTE  195 (768)
T ss_dssp             CCSCCEEEEEEECCSCHH--HHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHH
T ss_pred             CCCCCEEEEEEECCcCHH--HHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHH
Confidence            346778999999998863  68999999999999999999999999998765431000            000       


Q ss_pred             --------------------------------------CHHHHHHHHHHHhhc--CC---CCCCcchHHHHHHHHHHHhc
Q 007207          384 --------------------------------------TKEAVERAHQWIGIN--FI---AGGSTNICAPLTKAVEMLTN  420 (613)
Q Consensus       384 --------------------------------------~~~~~~~a~~~i~~~--~~---~~GgT~l~~aL~~A~~~l~~  420 (613)
                                                            ....+..+++.|...  ..   ..+.+.++.||..|..++..
T Consensus       196 ~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~  275 (768)
T 1m2o_A          196 MLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQG  275 (768)
T ss_dssp             HHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHH
T ss_pred             HHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhh
Confidence                                                  012234444444320  01   13556899999999999973


Q ss_pred             C-CCCccEEEEEecCCcCch---------h-------H--------------HHHHHHHHHHcCCCCCceEEEEEecCCC
Q 007207          421 S-RGSIPIIFLVTDGAVEDE---------R-------Q--------------ICDAMKSRLTNGGSICPRIYTFGIGSYC  469 (613)
Q Consensus       421 ~-~~~~~~IillTDG~~~~~---------~-------~--------------~~~~~~~~~~~~~~~~~~i~tigiG~~~  469 (613)
                      . ++....|++++.|.++.+         .       +              ..+.+...+.+. ...+.+|.++ ...+
T Consensus       276 ~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~-gi~VDlF~~~-~~~~  353 (768)
T 1m2o_A          276 CYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAAN-GHTVDIFAGC-YDQI  353 (768)
T ss_dssp             HCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH-TCEEEEEEEC-SSCC
T ss_pred             ccCCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHC-CeEEEEEEcc-CCcc
Confidence            1 122346888898876411         0       0              011122222221 2334555554 3457


Q ss_pred             CHHHHHHHHHhcCcEEEEcCCCc
Q 007207          470 NHYFLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       470 ~~~~L~~lA~~~gG~~~~v~~~~  492 (613)
                      +-..|..+++.|||..++..+..
T Consensus       354 dla~l~~l~~~TGG~v~~y~~f~  376 (768)
T 1m2o_A          354 GMSEMKQLTDSTGGVLLLTDAFS  376 (768)
T ss_dssp             SHHHHHHHHHHHTCCEEEESCTT
T ss_pred             ChHHHhhHhhcCCceEEEcCCCc
Confidence            88999999999999988776654

>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*

Probab=97.75  E-value=0.0012  Score=70.00  Aligned_cols=185  Identities=12%  Similarity=0.105  Sum_probs=111.2

Q ss_pred             ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee---------
Q 007207          308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL---------  375 (613)
Q Consensus       308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~---------  375 (613)
                      -.|.+.+.+.     +..|.|++||+|.|+||.. .++.+|+....+++.|   ..+-|+++..|-+....         
T Consensus        98 ~~f~v~~~~~-----~~ypvDLy~LmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~  171 (472)
T 3t3p_B           98 KNFSIQVRQV-----EDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPE  171 (472)
T ss_dssp             EEEEEEEECC-----SSCCEEEEEEEECSGGGHH-HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHH
T ss_pred             EEEEEEeecC-----CCCCceEEEEEccCcchHH-HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhh
Confidence            3566666554     3478999999999999975 5888888777776655   45779999999875210         


Q ss_pred             ---------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcc----hHHHHHHHH---HHHhcCCCCccE
Q 007207          376 ---------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPI  427 (613)
Q Consensus       376 ---------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~----l~~aL~~A~---~~l~~~~~~~~~  427 (613)
                                           ..+++  .+.....++++    .....|+-+    -.+||..|+   +.+.-+.+..+.
T Consensus       172 ~l~nPc~~~~~~c~p~f~fr~~l~LT--~d~~~F~~~V~----~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rl  245 (472)
T 3t3p_B          172 ALENPCYDMKTTCLPMFGYKHVLTLT--DQVTRFNEEVK----KQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHL  245 (472)
T ss_dssp             HHHCTTTTTTSCCCCCCSEEEEEEEE--SCHHHHHHHHH----HCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEE
T ss_pred             hhcCCCcccccCCCCCcceeEeeccC--CCHHHHHHHHh----hccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEE
Confidence                                 11221  24444444444    344555543    245555554   334334456789


Q ss_pred             EEEEecCCcC---ch-----------------h-----------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          428 IFLVTDGAVE---DE-----------------R-----------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       428 IillTDG~~~---~~-----------------~-----------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      +||+||....   |+                 .           .....+.+.+.+.+  -..||++-   .......+.
T Consensus       246 lV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~n--I~~IFAVt---~~~~~~Y~~  320 (472)
T 3t3p_B          246 LVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN--INLIFAVT---ENVVNLYQN  320 (472)
T ss_dssp             EEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTT--CEEEEEEC---GGGHHHHHH
T ss_pred             EEEECCCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcC--ccEEEEEe---ccchhHHHH
Confidence            9999997642   00                 0           01333444444332  13466662   224456677


Q ss_pred             HHHhcCcEEE-Ec-CCCcHHHHHHHHHHHHhccce
Q 007207          477 LAMISRGYYG-AA-YDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       477 lA~~~gG~~~-~v-~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      |+..-.|... .+ .|...+.+.+...+.++.+.+
T Consensus       321 L~~~ip~s~vg~L~~dSsNiv~LI~~aY~~i~s~V  355 (472)
T 3t3p_B          321 YSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRSKV  355 (472)
T ss_dssp             HHHTSTTCEEEECCTTSTTHHHHHHHHHHHHTTCE
T ss_pred             HHHhCCCceeeeccccchhHHHHHHHHHHHhheEE
Confidence            8776555433 33 455678888888888887755

>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*

Probab=97.54  E-value=0.0035  Score=65.96  Aligned_cols=184  Identities=13%  Similarity=0.164  Sum_probs=108.7

Q ss_pred             ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCccee---------
Q 007207          308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYL---------  375 (613)
Q Consensus       308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~---------  375 (613)
                      -.|.+.+.+.     +..|.|++||+|.|+||.. .++.+|.....+++.|.   .+-|+++..|-+....         
T Consensus       109 ~~f~v~~~~~-----~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~  182 (454)
T 3vi3_B          109 QTFTLKFKRA-----EDYPIDLYYLMDLSYSMKD-DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAK  182 (454)
T ss_dssp             CCEEEEEECC-----SCCCEEEEEEEECSGGGHH-HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTT
T ss_pred             EEEEEEEecC-----CCCceeEEEEecCCcchhh-HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHH
Confidence            3466655554     3478999999999999975 68888887777766554   5779999999875210         


Q ss_pred             -------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHHH---HHhcCCCCccEEE
Q 007207          376 -------------------FSTSMELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAVE---MLTNSRGSIPIIF  429 (613)
Q Consensus       376 -------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~~---~l~~~~~~~~~Ii  429 (613)
                                         ..+++  .+..   ...+.++ .....|+-+.    .+||..|.-   .+.-+. ..+.+|
T Consensus       183 ~~nPC~~~~~c~~~f~fr~~l~LT--~d~~---~F~~~V~-~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV  255 (454)
T 3vi3_B          183 LRNPCTSEQNCTTPFSYKNVLSLT--NKGE---VFNELVG-KQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLV  255 (454)
T ss_dssp             TTCCSCSSSCCCCCCSEEEEEEEE--SCHH---HHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEE
T ss_pred             hcCCCcCccCCCCCcceeeeeecC--CCHH---HHHHHHh-hccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEE
Confidence                               11221  1334   4445554 4556665443    344444432   232233 678999


Q ss_pred             EEecCCcC---chh---------------------------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHH
Q 007207          430 LVTDGAVE---DER---------------------------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAM  479 (613)
Q Consensus       430 llTDG~~~---~~~---------------------------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~  479 (613)
                      |+||....   |+.                           .....+.+.+.+.+ . ..||++-  . ......+.|+.
T Consensus       256 ~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~n-I-~~IFAVt--~-~~~~~Y~~L~~  330 (454)
T 3vi3_B          256 FSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENN-I-QTIFAVT--E-EFQPVYKELKN  330 (454)
T ss_dssp             EEESSCBCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTT-E-EEEEEEE--G-GGHHHHHHHHH
T ss_pred             EECCCCcCcCCCccccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcC-C-cEEEEEc--C-ccchHHHHHHH
Confidence            99997753   100                           01334444444332 1 3466552  2 23456677777


Q ss_pred             hcCcEEE-Ec-CCCcHHHHHHHHHHHHhccce
Q 007207          480 ISRGYYG-AA-YDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       480 ~~gG~~~-~v-~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      .-.|... .+ .|...+.+.+...+.++.+.+
T Consensus       331 ~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V  362 (454)
T 3vi3_B          331 LIPKSAVGTLSANSSNVIQLIIDAYNSLSSEV  362 (454)
T ss_dssp             HSTTEEEEEECTTCTTHHHHHHHHHHHHHTCE
T ss_pred             hCCCceeeEccccchhHHHHHHHHHHHhheEE
Confidence            6555433 22 445678888888888887655

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.53  E-value=0.00024  Score=79.60  Aligned_cols=184  Identities=14%  Similarity=0.185  Sum_probs=103.6

Q ss_pred             ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHH---HhCCCCCeEEEEEeCCccee---------
Q 007207          308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVAL---SKLDPGDSFNIVAFNGETYL---------  375 (613)
Q Consensus       308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l---~~L~~~d~~~Ii~F~~~~~~---------  375 (613)
                      -.|.+.+.+..     ..|.|++||+|.|+||.. .++.+|+....++   +.+..+-||++.+|.+....         
T Consensus        91 ~~f~~~~~~~~-----~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~  164 (687)
T 3k6s_B           91 AAFNVTFRRAK-----GYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDK  164 (687)
T ss_dssp             EEEEEEECCCC-----CCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTT
T ss_pred             eEEEEEEeccC-----CCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchh
Confidence            45666666543     367999999999999974 4666666555544   44567889999999874211         


Q ss_pred             --------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcc----hHHHHHHHH---HHHhcCCCCccEE
Q 007207          376 --------------------FSTSMELATKEAVERAHQWIGINFIAGGSTN----ICAPLTKAV---EMLTNSRGSIPII  428 (613)
Q Consensus       376 --------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~----l~~aL~~A~---~~l~~~~~~~~~I  428 (613)
                                          ..+++  .+.....++++    .....|+-+    -..||..|+   +.+.-+. ..+.|
T Consensus       165 ~~~Pc~~~~~~c~~~f~f~~~l~lt--~~~~~F~~~v~----~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rll  237 (687)
T 3k6s_B          165 LRNPCPNKEKECQPPFAFRHVLKLT--NNSNQFQTEVG----KQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLL  237 (687)
T ss_dssp             TTCCCCSCCCCCCCCCSCEEEEEEE--SCSHHHHHHHH----TSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEE
T ss_pred             ccCCCCCCCCCcCCcccceeecccC--CCHHHHHHHHh----hccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEE
Confidence                                11222  23344444444    444555533    245555554   3443233 67899


Q ss_pred             EEEecCCcC---chh----------------------H-----HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHH
Q 007207          429 FLVTDGAVE---DER----------------------Q-----ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA  478 (613)
Q Consensus       429 illTDG~~~---~~~----------------------~-----~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA  478 (613)
                      ||+||....   +..                      .     .+..+.+.+.+.+ + ..||++- .  ......+.|+
T Consensus       238 V~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~-I-~~ifavt-~--~~~~~y~~l~  312 (687)
T 3k6s_B          238 VFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENN-I-QPIFAVT-S--RMVKTYEKLT  312 (687)
T ss_dssp             EEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTT-C-BCCEEEC-G--GGHHHHHHHH
T ss_pred             EEECCCccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHcC-C-eEEEEEe-c--cchhhHHHHH
Confidence            999998753   100                      0     0223333343332 1 3455552 2  2445566666


Q ss_pred             Hhc-CcEEEEc-CCCcHHHHHHHHHHHHhccce
Q 007207          479 MIS-RGYYGAA-YDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       479 ~~~-gG~~~~v-~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      ..- ++..-.+ .+...+.+.+...++++.+.+
T Consensus       313 ~~i~~s~v~~L~~dSsni~~li~~ay~~i~s~v  345 (687)
T 3k6s_B          313 EIIPKSAVGELSEDSSNVVQLIKNAYNKLSSRV  345 (687)
T ss_dssp             HHSSSCCEEECCTTCCSCGGGTTTHHHHHSSCC
T ss_pred             hhcCCceeeeeccccHHHHHHHHHHHHhhhcee
Confidence            544 4433333 334457777777777776554

>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*

Probab=97.46  E-value=0.0036  Score=66.69  Aligned_cols=184  Identities=15%  Similarity=0.184  Sum_probs=107.9

Q ss_pred             ceEEEEEecCCCCCCCCCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee---------
Q 007207          308 EMFCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL---------  375 (613)
Q Consensus       308 ~~f~~~~~P~~~~~~~~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~---------  375 (613)
                      -.|.+.+.+.     +..|.|++||+|.|+||.. .++.+|+....+++.|   ..+-|+++..|-+....         
T Consensus       119 ~~f~v~~~~~-----~~yPVDLyyLmDlS~SM~d-dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~  192 (503)
T 3v4v_B          119 QQLQVRFLRA-----EGYPVDLYYLMDLSYSMKD-DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSK  192 (503)
T ss_dssp             EEEEEEEECC-----SSCCEEEEEEEECSGGGHH-HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHH
T ss_pred             EEEEEEEEcc-----CCCceeEEEEEecCcchhh-HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHH
Confidence            4566666554     3478999999999999974 6888888777776555   45779999999775210         


Q ss_pred             --------------------eeccccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHH---HHHhcCCCCccEE
Q 007207          376 --------------------FSTSMELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAV---EMLTNSRGSIPII  428 (613)
Q Consensus       376 --------------------~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~---~~l~~~~~~~~~I  428 (613)
                                          ..+++.  +..   +..+.++ .....|+-+.    .+||..|+   +.+.=+ ...+.+
T Consensus       193 l~~PC~~~~~~c~p~f~fr~~l~LT~--d~~---~F~~~V~-~~~iSGnlD~PEggfDAlmQaavC~~~IgWR-~a~rll  265 (503)
T 3v4v_B          193 LRHPCPTRLERCQSPFSFHHVLSLTG--DAQ---AFEREVG-RQSVSGNLDSPEGGFDAILQAALCQEQIGWR-NVSRLL  265 (503)
T ss_dssp             HHCCSSCSSSCCCCCCSEEEEEEEES--CSH---HHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC-SSEEEE
T ss_pred             hcCCCcCCCCCCCCCcceEEEEEecC--CHH---HHHHHHh-hcCccCCCCCCchHHHHHHHHhhcccccCCC-cceEEE
Confidence                                112221  333   4444454 4555565443    45555554   333222 356899


Q ss_pred             EEEecCCcCc---h-----------------h-----------HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHH
Q 007207          429 FLVTDGAVED---E-----------------R-----------QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRML  477 (613)
Q Consensus       429 illTDG~~~~---~-----------------~-----------~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~l  477 (613)
                      ||+||....-   +                 .           .....+.+.+.+.+ . ..||++  -. ......+.|
T Consensus       266 V~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~enn-I-~~IFAV--t~-~~~~~Y~~L  340 (503)
T 3v4v_B          266 VFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAAN-I-QPIFAV--TS-AALPVYQEL  340 (503)
T ss_dssp             EEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHT-E-EEEEEE--CS-SSHHHHHHH
T ss_pred             EEECCCCcCcCCCccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcC-C-eEEEEE--cc-cchhHHHHH
Confidence            9999976420   0                 0           01223333333221 1 235554  22 244567778


Q ss_pred             HHhcCcE-EEEc-CCCcHHHHHHHHHHHHhccce
Q 007207          478 AMISRGY-YGAA-YDLDSIEIQMQKLFTRGFSSV  509 (613)
Q Consensus       478 A~~~gG~-~~~v-~~~~~l~~~l~~~~~~~~~p~  509 (613)
                      +..-.|. .-.+ .|...+.+.+...+.++.+.+
T Consensus       341 ~~~ip~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V  374 (503)
T 3v4v_B          341 SKLIPKSAVGELSEDSSNVVQLIMDAYNSLSSTV  374 (503)
T ss_dssp             HTTSTTCEEEECCTTSCTHHHHHHHHHHHHHTCE
T ss_pred             HHhCCCceeeEccccchhHHHHHHHHHHHhheEE
Confidence            7765444 3333 345678888888888887755

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=97.38  E-value=0.0076  Score=68.79  Aligned_cols=226  Identities=12%  Similarity=0.159  Sum_probs=133.1

Q ss_pred             CCCCCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCCCC-------CeEEEEEeCCcceeee----------------
Q 007207          322 RKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPG-------DSFNIVAFNGETYLFS----------------  377 (613)
Q Consensus       322 ~~~~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~~~-------d~~~Ii~F~~~~~~~~----------------  377 (613)
                      ..+.|--++||||+|-. ....-++.++++++..|+.|+++       .+|++|+|++..+.+.                
T Consensus       173 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~  252 (770)
T 3efo_B          173 KPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDV  252 (770)
T ss_dssp             SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred             CCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEeccc
Confidence            35567889999999853 43346889999999999999864       5899999998754311                


Q ss_pred             -----cc----cc--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC-ch----
Q 007207          378 -----TS----ME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DE----  439 (613)
Q Consensus       378 -----~~----~~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~-~~----  439 (613)
                           |.    ..  .-....+..+++.|....  ....+|.++.||+.|+..+..... ...|++++.|.++ .+    
T Consensus       253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-GGkI~~F~s~lP~t~GpG~l  331 (770)
T 3efo_B          253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADC-PGKLFIFHSSLPTAEAPGKL  331 (770)
T ss_dssp             TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTC-CEEEEEEECSCCCSSSTTCC
T ss_pred             ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCC-CcEEEEEecCCCCcCCCccc
Confidence                 10    00  114566777777665221  335678899999999998864222 2356666666443 10    


Q ss_pred             ---------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcH--HHH
Q 007207          440 ---------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDS--IEI  496 (613)
Q Consensus       440 ---------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~--l~~  496 (613)
                                           ....+.+...+.+.+ ..+.+|.++. ..++-..|..+++.|||..++..+...  -.+
T Consensus       332 ~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~-i~VDlF~~s~-~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~  409 (770)
T 3efo_B          332 KNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHG-CSVTLFLFPS-QYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQ  409 (770)
T ss_dssp             CCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTT-EEEEEEECCS-SCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred             cccccccccCCcchhhhhcchHHHHHHHHHHHHHcC-eEEEEEEecC-CccChHHHHHHHhhcCceEEEecCCcchhHHH
Confidence                                 011223333333222 3344555432 457888999999999999888777642  233


Q ss_pred             HHHHHHHH-hccceeeeE--EEEecCCCCceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 007207          497 QMQKLFTR-GFSSVLANI--AIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF  550 (613)
Q Consensus       497 ~l~~~~~~-~~~p~l~~i--~l~~~~~~~~~~v~p---------~~ip~l~~g~~~~v~g~~~~~~  550 (613)
                      .|.+.+.+ +..+...+.  +++...++.....+-         -.++.+.....+.+.-++.++.
T Consensus       410 ~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l  475 (770)
T 3efo_B          410 QFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKL  475 (770)
T ss_dssp             HHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCC
T ss_pred             HHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCC
Confidence            44443333 333443333  344444432222211         1234455566666666666543

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=97.35  E-value=0.0091  Score=68.09  Aligned_cols=226  Identities=12%  Similarity=0.148  Sum_probs=132.4

Q ss_pred             CCCCCceEEEEEeCCCC-CCCCcHHHHHHHHHHHHHhCCCC-------CeEEEEEeCCcceeee----------------
Q 007207          322 RKVFKKDVIFIVDISGS-MQGKPLEDTKNALAVALSKLDPG-------DSFNIVAFNGETYLFS----------------  377 (613)
Q Consensus       322 ~~~~~~~vvfviD~SgS-M~g~~~~~ak~al~~~l~~L~~~-------d~~~Ii~F~~~~~~~~----------------  377 (613)
                      ..+.|--++||||+|-. ....-++.++++++..|+.|+++       .+|++|+|++..+.+.                
T Consensus       169 ~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl  248 (766)
T 3eh2_A          169 KFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDV  248 (766)
T ss_dssp             SCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCT
T ss_pred             CCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecCh
Confidence            34567889999999853 33335789999999999999864       6899999998754321                


Q ss_pred             -----cc----cc--ccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcC-ch----
Q 007207          378 -----TS----ME--LATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVE-DE----  439 (613)
Q Consensus       378 -----~~----~~--~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~-~~----  439 (613)
                           |.    ..  .-....+..+++.|....  ....+|.++.||+.|+..+..... ...|++++.|.++ .+    
T Consensus       249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~-GGkI~~F~s~lP~t~GpG~l  327 (766)
T 3eh2_A          249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAEC-AGKLFLFHTSLPIAEAPGKL  327 (766)
T ss_dssp             TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC-CEEEEEEECSCCCSSSTTCC
T ss_pred             hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCC-CcEEEEEecCCCCcCCCccc
Confidence                 10    01  113567777777765221  335678899999999998865322 2356666666443 10    


Q ss_pred             ---------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCcHH--HH
Q 007207          440 ---------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSI--EI  496 (613)
Q Consensus       440 ---------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~~l--~~  496 (613)
                                           ....+.+...+.+.+ ..+.+|.++. ..++-..|..+++.|||..++..+...-  .+
T Consensus       328 ~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~-i~VDlF~~s~-~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~  405 (766)
T 3eh2_A          328 KNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQG-CCVDLFLFPN-QYVDVATLSVVPQLTGGSVYKYASFQVENDQE  405 (766)
T ss_dssp             CCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHT-EEEEEEECCS-SCCCHHHHTHHHHHTTCCEEECTTCCHHHHHH
T ss_pred             ccccccccCCCcchhhhccchHHHHHHHHHHHHhCC-eEEEEEEecC-CCcChHHHHHHHhhcCceEEEeCCCcchhHHH
Confidence                                 011223333332222 2344555432 4578899999999999999887776431  23


Q ss_pred             HHHHHHHH-hccceeeeE--EEEecCCCCceeecc---------CCCCCCCCCCcEEEEEEEcCCC
Q 007207          497 QMQKLFTR-GFSSVLANI--AIDTLKDLDEFEMYP---------SRIPDLSSESPLIVSGRYQGKF  550 (613)
Q Consensus       497 ~l~~~~~~-~~~p~l~~i--~l~~~~~~~~~~v~p---------~~ip~l~~g~~~~v~g~~~~~~  550 (613)
                      .|.+.+.+ +..+...+.  +++...++.....+-         -.++.+-....+.+.-++.++.
T Consensus       406 ~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l  471 (766)
T 3eh2_A          406 RFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRL  471 (766)
T ss_dssp             HHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCC
T ss_pred             HHHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCC
Confidence            34433333 333443333  344444432222211         1234444556666666666544

>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}

Probab=96.86  E-value=0.043  Score=54.87  Aligned_cols=111  Identities=10%  Similarity=0.101  Sum_probs=79.2

Q ss_pred             CCcccccccceEEEE-----EEEE-------eeeEEEEEEEEEEecccCCCceeeEEEEeecCCCc--------------
Q 007207           80 PPSLIPLQMNAVELD-----VDCY-------LDTAFVRVSGTWRVHCVMGSKSCDCRIAVPMGDQG--------------  133 (613)
Q Consensus        80 ~~~~~pL~~~~v~v~-----v~~~-------~~~A~v~v~~~f~n~~~~~~~~~e~~y~FPL~~~a--------------  133 (613)
                      ++.++||+...|.++     |...       ...+.|+|.-+|.|   ++.......+.||+|...              
T Consensus        10 g~~~iP~~~s~Ism~kE~i~ik~~~~~~~~~~~~~~V~v~f~F~N---p~~~~ktI~vgFP~p~~~~~~~~~~~~~~~~~   86 (322)
T 4g2a_A           10 GSLPIPVSQPHIKMVSELIRISGKNLNEPQMNGSWHYNCNFTFKN---TLNKEVTISMAFPFPINDGNSEIALPAGQQTN   86 (322)
T ss_dssp             EECCEESSCCSEEEEEEEEEEEEESTTCTTCCCEEEEEEEEEEEE---CSSSCEEEEEEEEECBCCSSSEECCCTTCCCC
T ss_pred             CCeeeeeccCceeEEEEEEEEEeccccccccccceEEEEEEEEeC---CCCCcEEEEEEecCCCccCCcccccccccCCC
Confidence            345778887666543     3211       12478999999999   678899999999988332              


Q ss_pred             ----eEEEEEEEECCEEEEEEEeecccccccccccccccCCcccCCeeEEecCCCCCCCEEEEEEEEEEEeecc
Q 007207          134 ----SILGVEAEISGKSYHTQLIALGENDGAGKSASVETGSFLKPNIFTLTLPQIDGGSYLSIRLRWSQKLSYR  203 (613)
Q Consensus       134 ----~V~~f~~~i~~r~i~g~v~ek~~A~~~~~~~~~~~~~ll~~n~F~~~V~ni~p~~~v~v~i~Y~q~L~~~  203 (613)
                          .|.+|...||||.+..++.....-.         +.+.--...|...+ ..++|+++.|+-+|.-.+...
T Consensus        87 ~~~~~i~dFkt~VNGk~V~~~~~~~a~~~---------~k~v~~~~~Y~f~~-~F~~G~~~~V~HsY~~~~s~~  150 (322)
T 4g2a_A           87 VGQALVYDFLVTVNDKQVSAQRGNIAPDQ---------NKGLYYEDAYFWKT-TFPPLATVNIHHDYSTGATYD  150 (322)
T ss_dssp             TTCBSCEEEEEEETTEEECCEEEECCCBG---------GGTBCCSEEEEEEE-EECTTCEEEEEEEEEEECEEE
T ss_pred             CCCcceeeEEEEECCEEcccchhhcCccc---------cCCcccceeEEEee-ecCCCCeeEEEEEEEecCcCC
Confidence                3889999999999998876433211         11112245677666 789999999999998777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	613
d1q0pa_	209	c.62.1.1 (A:) Complement factor B domain {Human (H	1e-12
d1shux_	181	c.62.1.1 (X:) Capillary morphogenesis protein 2 do	3e-11
d1yvra2	174	c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprot	6e-11
d1atza_	184	c.62.1.1 (A:) von Willebrand factor A3 domain, vWA	4e-10
d1n3ya_	189	c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo	3e-09
d1mf7a_	194	c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, M	7e-09
d1jeya2	220	c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain	4e-08
d1mjna_	179	c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte funct	1e-07
d1ijba_	202	c.62.1.1 (A:) von Willebrand factor A1 domain, vWA	1e-06
d1pt6a_	192	c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo s	2e-06
d1jeyb2	236	c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain	4e-06
d1v7pc_	193	c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo s	1e-05

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-12
 Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 28/199 (14%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGD---SFNIVAFNGETYLFSTSMELAT 384
           ++  ++D S S+        K +L   + K+        + +V +     ++    E  +
Sbjct: 3   NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 62

Query: 385 KEAVERAHQWIGINFI---AGGSTNICAPLTKAVEMLTNSRGSIP--------IIFLVTD 433
             A     Q   IN+        TN    L     M++      P        +I L+TD
Sbjct: 63  SNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTD 122

Query: 434 GAVEDERQICDA---------MKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGY 484
           G                    +     N       +Y FG+G   N   +  LA      
Sbjct: 123 GLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNE 182

Query: 485 YGAAY-----DLDSIEIQM 498
                     +L+ +  QM
Sbjct: 183 QHVFKVKDMENLEDVFYQM 201

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 3e-11
 Identities = 22/179 (12%), Positives = 59/179 (32%), Gaps = 8/179 (4%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEA 387
           D+ F++D SGS+    +E       +A   + P    + + F+ +  +         +  
Sbjct: 7   DLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATII--LPLTGDRGK 64

Query: 388 VERAHQWIGINFIAGGS-TNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVED-ERQICDA 445
           + +  + +      G +  +    L            +  II  +TDG ++       + 
Sbjct: 65  ISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEK 124

Query: 446 MKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLDSIEIQMQKLFTR 504
                 + G+    +Y  G+  +     L  +A      +       +++  +  +  +
Sbjct: 125 EAKISRSLGA---SVYCVGVLDF-EQAQLERIADSKEQVFPVKGGFQALKGIINSILAQ 179

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 174

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 59.5 bits (143), Expect = 6e-11
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 14/146 (9%)

Query: 327 KDVIFIVDISGSMQ----GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMEL 382
           K  +  +D+S SM     G  L  +  A A+ +         ++VAF+ E      ++ +
Sbjct: 6   KRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNM 65

Query: 383 ATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQI 442
              E VE+       +      T+   P+  A +  T +     I  + TD     E   
Sbjct: 66  LLHEVVEKMSDITMGS------TDCALPMLWAQKTNTAAD----IFIVFTDCETNVEDVH 115

Query: 443 CDAMKSRLTNGGSICPRIYTFGIGSY 468
                 +      I  ++    + S 
Sbjct: 116 PATALKQYREKMGIPAKLIVCAMTSN 141

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A3 domain, vWA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 4e-10
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 13/157 (8%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           DVI ++D S S      ++ K+     +SK + G      +++ +   T +      +  
Sbjct: 4   DVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPE 63

Query: 385 KEAVERA---HQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQ 441
           K  +       Q  G     G +         +         S  ++ LVTD +V+    
Sbjct: 64  KAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVDA 123

Query: 442 ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478
             DA +S           ++  GIG   +   LR+LA
Sbjct: 124 AADAARSN-------RVTVFPIGIGDRYDAAQLRILA 153

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha-x beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 3e-09
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 15/187 (8%)

Query: 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETYLFSTSMELAT 384
           ++D++F++D SGS+  +      N +   +S+       F+++ F+ +     T  E   
Sbjct: 2   EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRR 61

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDE 439
                     +         T     +   V  L +      R +  I+ ++TDG  E +
Sbjct: 62  SSNPLSLLASVHQLQG---FTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD 118

Query: 440 RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR--MLAMISRGYYGAAYDLDSIEIQ 497
                 +       G I    Y  G+G    +      +  + S+      + ++  +  
Sbjct: 119 SLDYKDVIPMADAAGIIR---YAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFD-A 174

Query: 498 MQKLFTR 504
           ++ +  +
Sbjct: 175 LKDIQNQ 181

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 7e-09
 Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 19/197 (9%)

Query: 323 KVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETYLFSTSME 381
                D+ F++D SGS+        K  ++  + +L      F+++ ++ E  +  T  E
Sbjct: 2   PQEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKE 61

Query: 382 LATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP----IIFLVTDGAVE 437
                      +   I  + G +           E+   + G+      I+ ++TDG   
Sbjct: 62  FQNNPNPRSLVKP--ITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF 119

Query: 438 DERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR--MLAMISRGYYGAAY------ 489
            +    + +       G      Y  G+G        R  +  + S+      +      
Sbjct: 120 GDPLGYEDVIPEADREG---VIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFE 176

Query: 490 DLDSIEIQM-QKLFTRG 505
            L +I+ Q+ +K+F  G
Sbjct: 177 ALKTIQNQLREKIFCIG 193

>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku70 subunit N-terminal domain
domain: Ku70 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-08
 Identities = 18/173 (10%), Positives = 45/173 (26%), Gaps = 31/173 (17%)

Query: 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKL----------DPGDSFNIVAFNGETYL 375
           +  +IF+VD S +M     ED      +++  +             D   +V +  E   
Sbjct: 2   RDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDK 61

Query: 376 FSTSMELATKEAVERAHQW-----------------IGINFIAGGSTNICAPLTKAVEML 418
            S + +                                     G   ++   L     + 
Sbjct: 62  NSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLF 121

Query: 419 TNSRG--SIPIIFLVTDGA--VEDERQICDAMKSRLTNGGSICPRIYTFGIGS 467
           ++ +   S   I L T+      ++       +++  +       +    +  
Sbjct: 122 SDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKK 174

>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS-FNIVAFNGETYLFSTSMELATKE 386
           D++F+ D S S+Q    +   + +   + K       F  V F+          +   ++
Sbjct: 4   DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRK 63

Query: 387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIP----IIFLVTDGAVEDERQI 442
             +   +   +  +   +    A    A E+     G+ P    ++ ++TDG   D   I
Sbjct: 64  DPDALLK--HVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNI 121

Query: 443 CDAMKSR 449
             A    
Sbjct: 122 DAAKDII 128

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 202

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A1 domain, vWA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 21/185 (11%), Positives = 56/185 (30%), Gaps = 13/185 (7%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           D++F++D S  +     E  K  +   + +L          +V ++  ++ +    +   
Sbjct: 15  DLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKR 74

Query: 385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEML----TNSRGSIPIIFLVTDGAVEDER 440
              + R      + +      +    L   +  +         S   + L+     +   
Sbjct: 75  PSELRRIASQ--VKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMS 132

Query: 441 QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI-SRGYYGAAYDLDSIEIQMQ 499
           +        L         +   GIG + N   +R++              +D +E Q  
Sbjct: 133 RNFVRYVQGLKKKK---VIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRD 189

Query: 500 KLFTR 504
           ++ + 
Sbjct: 190 EIVSY 194

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 12/154 (7%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDS---FNIVAFNGETYLFSTSMELAT 384
           D++ ++D S S+   P +     L   L ++D G       IV +           + ++
Sbjct: 3   DIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSS 60

Query: 385 KEAVERAHQWIGINFIAGGSTNICA--PLTKAVEMLTNSR-GSIPIIFLVTDGAVEDERQ 441
            E V  A + I         T +       +A      +R G   ++ +VTDG   D  +
Sbjct: 61  TEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHR 120

Query: 442 ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLR 475
           +   ++           + ++  I    N   L 
Sbjct: 121 LKKVIQDCEDEN----IQRFSIAILGSYNRGNLS 150

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 20/166 (12%), Positives = 43/166 (25%), Gaps = 26/166 (15%)

Query: 326 KKDVIFIVDISGSMQGK------PLEDTKNALAVALSKL---DPGDSFNIVAFNGE---- 372
           K  V+  +D+  +M         P E  K  + + + +    +  D   +V F  +    
Sbjct: 2   KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDN 61

Query: 373 ------TYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEM----LTNSR 422
                  Y   T          +                +    L  ++++        +
Sbjct: 62  PLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKK 121

Query: 423 GSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY 468
                I + TD +    +   D +   L         +  F   S 
Sbjct: 122 FEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDI---SLQFFLPFSL 164

>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha2-beta1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 12/159 (7%)

Query: 328 DVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELAT-KE 386
           DV+ + D S S+   P +  KN L   +  LD G +   V              L T K 
Sbjct: 3   DVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKT 60

Query: 387 AVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQ 441
             E        +   G  TN    +  A +   ++     R +  ++ +VTDG   D   
Sbjct: 61  KEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSM 120

Query: 442 ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI 480
           +   +     +        +   +  Y N   L    +I
Sbjct: 121 LKAVIDQCNHDN----ILRFGIAVLGYLNRNALDTKNLI 155

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	613
d1shux_	181	Capillary morphogenesis protein 2 domain {Human (H	99.8
d1q0pa_	209	Complement factor B domain {Human (Homo sapiens) [	99.78
d1atza_	184	von Willebrand factor A3 domain, vWA3 {Human (Homo	99.75
d1n3ya_	189	Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI	99.74
d1ijba_	202	von Willebrand factor A1 domain, vWA1 {Human (Homo	99.73
d1v7pc_	193	Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId	99.72
d1mf7a_	194	Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub	99.71
d1pt6a_	192	Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId	99.68
d1mjna_	179	Integrin CD11a/CD18 (Leukocyte function associated	99.64
d1jeya2	220	Ku70 subunit N-terminal domain {Human (Homo sapien	99.46
d1yvra2	174	60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c	99.36
d1jeyb2	236	Ku80 subunit N-terminal domain {Human (Homo sapien	99.34
d1tyeb2	248	Integrin beta A domain {Human (Homo sapiens) [TaxI	99.01
d1pd0a3	252	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	98.24
d2qtva3	271	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	98.15

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.7e-19  Score=164.11  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=138.4

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC-CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~-~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      .+.|++||||.||||.+ .+...|+++..++..+. +++|++|+.|++.++.+.++..  +...+.++++.+. ....+|
T Consensus         4 ~~~Div~llD~S~Sm~~-~~~~~k~~~~~~~~~~~~~~~rvglv~fs~~~~~~~~l~~--~~~~~~~~l~~l~-~~~~~g   79 (181)
T d1shux_           4 RAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTG--DRGKISKGLEDLK-RVSPVG   79 (181)
T ss_dssp             SCEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC--CHHHHHHHHHHHH-TCCCCS
T ss_pred             CceEEEEEEeCCCCccc-CHHHHHHHHHHHHHHhcCCCCEEEEEEeecceEEEEEecC--CHHHHHHHhhhcc-cccCCC
Confidence            46899999999999987 57788999999998875 4789999999999998887754  6777888888887 677889


Q ss_pred             CcchHHHHHHHHHHHhcC--CCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHh
Q 007207          404 STNICAPLTKAVEMLTNS--RGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMI  480 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~~--~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~  480 (613)
                      +|++..||+.+.+.+...  .+..+.||++|||.+++.. .......+.+++   .++++|+||+|. .+...|+.||..
T Consensus        80 ~t~~~~al~~~~~~~~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~k~---~gv~v~~vgig~-~~~~~L~~ia~~  155 (181)
T d1shux_          80 ETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRS---LGASVYCVGVLD-FEQAQLERIADS  155 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHH---TTCEEEEEECSS-CCHHHHHHHSSS
T ss_pred             cchHHHHHHHHHHHhhhcccCCCceEEEEecCCCCCCCccHHHHHHHHHHHH---CCCEEEEEEeCc-cCHHHHHHHhCC
Confidence            999999999999988643  3456799999999986543 222333333433   348999999996 599999999987


Q ss_pred             cCcEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          481 SRGYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       481 ~gG~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      .++.|+...+.+++...+..+.+++|
T Consensus       156 ~~~~~~~~~~~~~L~~~~~~i~~~iC  181 (181)
T d1shux_         156 KEQVFPVKGGFQALKGIINSILAQSC  181 (181)
T ss_dssp             GGGEEESSSTTHHHHHHHHHHHHTBC
T ss_pred             CCceEEecCCHHHHHHHHHHHHhhhC
Confidence            77766655566888888888877664

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.6e-19  Score=167.46  Aligned_cols=179  Identities=17%  Similarity=0.240  Sum_probs=124.4

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeecccc--ccCHHHHHHHHHHHhh-cCC
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSME--LATKEAVERAHQWIGI-NFI  400 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~--~~~~~~~~~a~~~i~~-~~~  400 (613)
                      .|++||||.||||.+++++.+|.++..+++.+.   .+.||+|+.|++.+..+.++..  ..+...+..+++.+.. ...
T Consensus         2 lDivfvlD~SgSm~~~~~~~~k~~~~~li~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~l~~~i~~i~~~~~~   81 (209)
T d1q0pa_           2 MNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK   81 (209)
T ss_dssp             EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCS
T ss_pred             cCEEEEEeCCCCCChHHHHHHHHHHHHHHHhcccCCCCcEEEEEEecCceeEEecCccchhhHHHHHHHHHHHhhhcccc
Confidence            589999999999998999999999999998874   5789999999999988776643  2355666677765531 124


Q ss_pred             CCCCcchHHHHHHHHHHHhcCC--------CCccEEEEEecCCcCch---hHHHHHHHHHHH------cCCCCCceEEEE
Q 007207          401 AGGSTNICAPLTKAVEMLTNSR--------GSIPIIFLVTDGAVEDE---RQICDAMKSRLT------NGGSICPRIYTF  463 (613)
Q Consensus       401 ~~GgT~l~~aL~~A~~~l~~~~--------~~~~~IillTDG~~~~~---~~~~~~~~~~~~------~~~~~~~~i~ti  463 (613)
                      .+|+|++..||+.+.+.+....        +..+.|||+|||.++..   ......++....      .....++.+|+|
T Consensus        82 ~~g~t~~~~al~~a~~~~~~~~~~~~~~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~v  161 (209)
T d1q0pa_          82 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVF  161 (209)
T ss_dssp             CTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHhhhccCccccCCCceEEEEEcCCCccCCCChHHHHHHHHHhhhhHHHHHHHHhcCCceEEe
Confidence            6789999999999999885432        12468999999998653   233333333221      122345789999


Q ss_pred             EecCCCCHHHHHHHHHhcCcE--EEEcCCCcHHHHHHHHHHHHh
Q 007207          464 GIGSYCNHYFLRMLAMISRGY--YGAAYDLDSIEIQMQKLFTRG  505 (613)
Q Consensus       464 giG~~~~~~~L~~lA~~~gG~--~~~v~~~~~l~~~l~~~~~~~  505 (613)
                      |+|.+.+...|+.||..++|.  ++.+.+.++|.+.+.+++.+.
T Consensus       162 gvg~~~~~~~L~~iAs~~~~~~~~f~~~~~~~L~~~~~~ii~~~  205 (209)
T d1q0pa_         162 GVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES  205 (209)
T ss_dssp             ECSSCCCHHHHHHHSCCCTTCCCEEETTC---------------
T ss_pred             cCCccCCHHHHHHHHcCCCCCeeEEEeCCHHHHHHHHHHHHHhh
Confidence            999999999999999877654  788899999988888777654

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A3 domain, vWA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-17  Score=155.41  Aligned_cols=164  Identities=17%  Similarity=0.188  Sum_probs=129.9

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      .|.|++|+||.||||.+..++.+|+++..+++.+.   .+.|++|+.|++++....++....+.+.+.++++.+.   ..
T Consensus         1 ~PlDivfliD~S~s~~~~~f~~~k~~v~~~i~~~~i~~~~~rv~vv~f~~~~~~~~~l~~~~~~~~l~~~i~~l~---~~   77 (184)
T d1atza_           1 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQ---RE   77 (184)
T ss_dssp             CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC---CC
T ss_pred             CceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEEeccceeeccccccccHHHHHHHHHhhh---hc
Confidence            37899999999999999899999999999999884   3569999999999988877766667777777776443   46


Q ss_pred             CCCcchHHHHHHHHHHHhcC-----CCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          402 GGSTNICAPLTKAVEMLTNS-----RGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~-----~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      +|+|++..||+.+.+.+...     ++..+.+||+|||.+++...  . ..+.+++.   ++.+|+||+|.+.|...|+.
T Consensus        78 gg~t~~~~al~~~~~~~~~~~~g~R~~~~kvvvlltdg~~~d~~~--~-~a~~lk~~---gi~v~~igiG~~~~~~~L~~  151 (184)
T d1atza_          78 GGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDSVD--A-AADAARSN---RVTVFPIGIGDRYDAAQLRI  151 (184)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSCCH--H-HHHHHHHT---TEEEEEEEESSSSCHHHHHH
T ss_pred             ccccchhhhhhHHHHHhhhhhcCCCCCCceEEEEEEecCccchhh--H-HHHHHHHc---CcEEEEEEeCCcCCHHHHHH
Confidence            78899999999999887542     34467999999999875432  2 22233332   48999999999999999999


Q ss_pred             HHHhcC-cEEEEcCCCcHHHHH
Q 007207          477 LAMISR-GYYGAAYDLDSIEIQ  497 (613)
Q Consensus       477 lA~~~g-G~~~~v~~~~~l~~~  497 (613)
                      ||..++ ...+.+.+.++|...
T Consensus       152 ias~~~~~~~~~~~~~~~L~~~  173 (184)
T d1atza_         152 LAGPAGDSNVVKLQRIEDLPTM  173 (184)
T ss_dssp             HTGGGGGGGCEEESSTTHHHHH
T ss_pred             HhCCCCcccEEEeCCHHHHHHH
Confidence            998655 455678888888653

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha-x beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-18  Score=163.70  Aligned_cols=176  Identities=18%  Similarity=0.225  Sum_probs=131.0

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCC-CCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDP-GDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS  404 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~-~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg  404 (613)
                      +.|++||||.|+||...++..+|++++.+++.|.+ +.||+|+.|++.+..+.++....   +..+..+.+......+|+
T Consensus         2 e~DivfvlD~S~Sm~~~~~~~~k~~~~~~i~~l~~~~~rv~vv~fs~~~~~~~~l~~~~---~~~~~~~~i~~~~~~~g~   78 (189)
T d1n3ya_           2 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFR---RSSNPLSLLASVHQLQGF   78 (189)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHHHHH---HCSSGGGGGTTCCCCCSC
T ss_pred             CccEEEEEeCCCCCChHHHHHHHHHHHHHHHHhCCCCCEEEEEEeeccceeeccccccc---cHHHHHHHHHhhhhhhhh
Confidence            57999999999999988899999999999999975 56899999999998887764322   222334444433346899


Q ss_pred             cchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCC----CCHHHHH
Q 007207          405 TNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSY----CNHYFLR  475 (613)
Q Consensus       405 T~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~----~~~~~L~  475 (613)
                      |++..||..+.+.+..     +++..+.+||+|||.+++.......+.+.+++.   ++.+|+||+|..    .+...|+
T Consensus        79 t~~~~al~~a~~~~f~~~~~~r~~~~kvivllTDG~~~~~~~~~~~~~~~~~~~---gv~i~~Vgig~~~~~~~~~~~L~  155 (189)
T d1n3ya_          79 TYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAA---GIIRYAIGVGLAFQNRNSWKELN  155 (189)
T ss_dssp             BCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHT---TCEEEEEEESGGGGSSTTHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhcCCCCCCceEEEEEecCCCCCCcccHHHHHHHHHHC---CCceEEEeccccccccccHHHHH
Confidence            9999999999876532     234457999999999865432233333333333   489999999964    3556799


Q ss_pred             HHHHhcC-cEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          476 MLAMISR-GYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       476 ~lA~~~g-G~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      .||..+. ++++.+.+.+.+.+.+.++.+++|.
T Consensus       156 ~ias~~~~~~~~~~~~~~~l~~i~~~i~~~ic~  188 (189)
T d1n3ya_         156 DIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA  188 (189)
T ss_dssp             HHSCSSSGGGEEEESSGGGGGGGHHHHHHHHHT
T ss_pred             HHhcCCCcceEEEeCCHHHHHHHHHHHHHhccc
Confidence            9997754 5567788888998888888888875

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: von Willebrand factor A1 domain, vWA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.6e-17  Score=153.93  Aligned_cols=177  Identities=12%  Similarity=0.134  Sum_probs=139.3

Q ss_pred             CCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCC
Q 007207          325 FKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIA  401 (613)
Q Consensus       325 ~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~  401 (613)
                      .+.|++||||.|+||....++.+|+++..+++.|.   .+.|++|+.|++.++...++....+.+.+.++++.+.  ...
T Consensus        12 ~~~Dl~fvlD~S~S~~~~~f~~~k~fv~~~i~~l~~~~~~~rvavv~y~~~~~~~~~l~~~~~~~~l~~~i~~l~--~~~   89 (202)
T d1ijba_          12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVK--YAG   89 (202)
T ss_dssp             SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCC--CCC
T ss_pred             CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEecceeeecCCcccchHHHHHHHHHhhh--hhh
Confidence            56899999999999988889999999999999984   4679999999999988888776667787887777553  122


Q ss_pred             CCCcchHHHHHHHHHHHhcC---CCCccEEEEEecCCcCch--hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHH
Q 007207          402 GGSTNICAPLTKAVEMLTNS---RGSIPIIFLVTDGAVEDE--RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRM  476 (613)
Q Consensus       402 ~GgT~l~~aL~~A~~~l~~~---~~~~~~IillTDG~~~~~--~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~  476 (613)
                      +++|++..||+.+.+.+...   ++..+.+|++|||..++.  ..+...+. .+++   .++.||+||+|...+...|+.
T Consensus        90 g~~~~~~~al~~~~~~~~~~~~r~~~~k~vivitdg~~~~~~~~~~~~~~~-~l~~---~gv~i~~Vgig~~~~~~~L~~  165 (202)
T d1ijba_          90 SQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQ-GLKK---KKVIVIPVGIGPHANLKQIRL  165 (202)
T ss_dssp             BSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGGCTTHHHHHH-HHHH---TTEEEEEEEESTTSCHHHHHH
T ss_pred             hccccHHHHHHHHHHHhhhhccCCCCcceEEEecccCCCcccchHHHHHHH-HHHH---cCCeEEEEEeCCcCCHHHHHH
Confidence            34589999999998776433   244678899999987543  22333333 3333   248999999999999999999


Q ss_pred             HHHhcC-cEEEEcCCCcHHHHHHHHHHHHhcc
Q 007207          477 LAMISR-GYYGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       477 lA~~~g-G~~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                      ||..+. +.++.+.+.++|...+.++.+.+|.
T Consensus       166 ia~~~~~~~~~~~~~~~~L~~~~~~i~~~iC~  197 (202)
T d1ijba_         166 IEKQAPENKAFVLSSVDELEQQRDEIVSYLCD  197 (202)
T ss_dssp             HHHHCTTCCCEEESSGGGHHHHHHHHHHHHHH
T ss_pred             HhcCCCcCcEEEeCCHHHHHHHHHHHHHHHcC
Confidence            998765 5567788889999999999988875

>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha2-beta1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.1e-17  Score=153.55  Aligned_cols=173  Identities=19%  Similarity=0.202  Sum_probs=133.5

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      .|++||||.|+||.  .++.+|++++.+++.+.   .+.||+|+.|++.++...++....+.+.+.+++..+.  ...+|
T Consensus         2 ~DivfvlD~S~Sv~--~f~~~k~f~~~ii~~~~i~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~--~~~g~   77 (193)
T d1v7pc_           2 IDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTS--QYGGD   77 (193)
T ss_dssp             EEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCC--CCCCS
T ss_pred             EEEEEEEECCCCCc--cHHHHHHHHHHHHHHcccCCCccEEEEEEeecceeeeecccchhhHHHHHHHHHhhh--hhccC
Confidence            48999999999995  69999999999999984   4679999999999998888776667777777777553  23456


Q ss_pred             CcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC--------
Q 007207          404 STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN--------  470 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~--------  470 (613)
                      +|+++.||+.|.+.+..     +++..+.+|++|||.+++......... .++.   .++.+|+||+|...+        
T Consensus        78 ~t~~~~AL~~a~~~~f~~~~~~R~~~~kvvVllTDG~s~d~~~~~~~~~-~~~~---~gv~v~~Igvg~~~~~~~~~~~~  153 (193)
T d1v7pc_          78 LTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVID-QCNH---DNILRFGIAVLGYLNRNALDTKN  153 (193)
T ss_dssp             CCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHH-HHHH---TTEEEEEEEECHHHHHTTCCCHH
T ss_pred             ccchHHHHHHHHHhccccccCCCCCCceEEEEEecCCcCCCccHHHHHH-HHHh---CCCEEEEEEeCCccccccccccc
Confidence            79999999999998732     234467999999999887765444333 3333   248999999986432        


Q ss_pred             -HHHHHHHHHhcCcE-EEEcCCCcHHHHHHHHHHHHhcc
Q 007207          471 -HYFLRMLAMISRGY-YGAAYDLDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       471 -~~~L~~lA~~~gG~-~~~v~~~~~l~~~l~~~~~~~~~  507 (613)
                       ...|+.||..+.+. ++.+.+...|.+...++.+++|+
T Consensus       154 ~~~~L~~Ias~p~~~~~f~v~d~~~L~~i~~~l~~~Ic~  192 (193)
T d1v7pc_         154 LIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIFS  192 (193)
T ss_dssp             HHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhcCCCcceEEEcCCHHHHHHHHHHHHhhccc
Confidence             34588998876554 55678889999988888888875

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.1e-18  Score=161.36  Aligned_cols=177  Identities=16%  Similarity=0.199  Sum_probs=127.8

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCC-CeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCC
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG-DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAG  402 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~-d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~  402 (613)
                      ..+.|++||||.|+||.+..++.+|+++..+++.|.++ .||+|+.|++.+....++....   +..+..+.|+.....+
T Consensus         3 ~~~~DivfvlD~S~s~~~~~~~~~k~f~~~iv~~l~~~~~rv~vv~fs~~~~~~~~l~~~~---~~~~~~~~i~~i~~~~   79 (194)
T d1mf7a_           3 QEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQ---NNPNPRSLVKPITQLL   79 (194)
T ss_dssp             CCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHHHHH---HSCCHHHHHTTCCCCC
T ss_pred             CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcCCceEEEEEEeccceeEEeccccC---CHHHHHHHHhhhhhhh
Confidence            45789999999999999888999999999999999764 5999999999998876654322   3233444444222457


Q ss_pred             CCcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCC----CHHH
Q 007207          403 GSTNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYC----NHYF  473 (613)
Q Consensus       403 GgT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~----~~~~  473 (613)
                      |+|++..||..+.+.+..     .++..+.+||+|||.+++.........+.+++   .++++|+||+|...    +...
T Consensus        80 ~~t~~~~al~~~~~~~~~~~~~~~~~~~kvvvliTDG~~~~~~~~~~~~~~~~~~---~gv~i~~VGi~~~~~~~~~~~~  156 (194)
T d1mf7a_          80 GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADR---EGVIRYVIGVGDAFRSEKSRQE  156 (194)
T ss_dssp             SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHH---TTEEEEEEEESGGGCSHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhhccCCCCCceEEEEEecCCCCCCchhHHHHHHHHHH---cCCeeEEEecCCcccccccHHH
Confidence            889999999999987632     23445789999999976543222222222232   24899999999643    3456


Q ss_pred             HHHHHHhcCc-EEEEcCCCcHHHHHHHHHHHHhc
Q 007207          474 LRMLAMISRG-YYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       474 L~~lA~~~gG-~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                      |+.||....+ .++.+.+.+.|...+.++.++++
T Consensus       157 L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~i~  190 (194)
T d1mf7a_         157 LNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF  190 (194)
T ss_dssp             HHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEeCCHHHHHHHHHHHHHHhc
Confidence            8888876544 46678888888888888877764

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.2e-16  Score=148.98  Aligned_cols=172  Identities=18%  Similarity=0.166  Sum_probs=127.2

Q ss_pred             ceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCC
Q 007207          327 KDVIFIVDISGSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGG  403 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~G  403 (613)
                      .|++||||.|+||.  .++.+|++++.+++.+.   .+.||+|+.|++.+....++....+...+..++..+.  ...++
T Consensus         2 ~DivfvlD~S~S~~--~~~~~k~f~~~~i~~~~i~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~--~~~g~   77 (192)
T d1pt6a_           2 LDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIV--QRGGR   77 (192)
T ss_dssp             EEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCC--CCCCS
T ss_pred             eEEEEEEECCCCCC--CHHHHHHHHHHHHHHhccCCCCcEEEEEEEeccEEEEEeCCcchhhHHHHHHHhhhh--hhhhh
Confidence            58999999999996  59999999999999885   3569999999999988888766556666666665432  12334


Q ss_pred             CcchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC--------
Q 007207          404 STNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN--------  470 (613)
Q Consensus       404 gT~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~--------  470 (613)
                      +++++.||..+...+..     +++..+.+||+|||.++++..+.+.++ .+++   .++++|+||+|...+        
T Consensus        78 ~~~~~~al~~~~~~~~~~~~g~R~~~~kviillTDG~~~d~~~~~~~a~-~lk~---~gi~v~~igvg~~~~~~~~~~~~  153 (192)
T d1pt6a_          78 QTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQ-DCED---ENIQRFSIAILGSYNRGNLSTEK  153 (192)
T ss_dssp             SCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHH-HHHH---TTEEEEEEEECHHHHHTTCCCHH
T ss_pred             ccchHHHHHHHHHhhhccccCCCCCcceEEEEEecCCCCcchhhHHHHH-HHHH---CCCeEEEEEEecccccccccccc
Confidence            57888999999876532     234457899999999887665544443 3333   348999999996543        


Q ss_pred             -HHHHHHHHHhcC-cEEEEcCCCcHHHHHHHHHHHHhc
Q 007207          471 -HYFLRMLAMISR-GYYGAAYDLDSIEIQMQKLFTRGF  506 (613)
Q Consensus       471 -~~~L~~lA~~~g-G~~~~v~~~~~l~~~l~~~~~~~~  506 (613)
                       ...|+.||.... .+++.+.+.+.|...+..+.+++.
T Consensus       154 ~~~~L~~IAs~p~~~~~f~v~d~~~L~~i~~~i~~~I~  191 (192)
T d1pt6a_         154 FVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIF  191 (192)
T ss_dssp             HHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHT
T ss_pred             cHHHHHHHhcCCCcccEEEcCCHHHHHHHHHHHHHHhc
Confidence             345899987644 446778988888887777766653

>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6e-17  Score=151.20  Aligned_cols=166  Identities=14%  Similarity=0.140  Sum_probs=122.9

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCC-CeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcCCCCCC
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPG-DSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINFIAGGS  404 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~-d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~Gg  404 (613)
                      +.|++||||.|+||....++.+|+++..+++.+.++ .|++|+.|++.++....+....+.+.+.++++.+   ...+|+
T Consensus         2 ~~DivfllD~S~Si~~~~f~~~k~f~~~~i~~i~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~i---~~~~g~   78 (179)
T d1mjna_           2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHV---KHMLLL   78 (179)
T ss_dssp             CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTC---CCCCBC
T ss_pred             CeEEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeeeeeEEechhhccchHHHHHHHhhh---hcccCc
Confidence            579999999999999888999999999999998764 4899999999998877664433334444444433   245889


Q ss_pred             cchHHHHHHHHHHHhc-----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceEEEEEecCCCC----HHHHH
Q 007207          405 TNICAPLTKAVEMLTN-----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRIYTFGIGSYCN----HYFLR  475 (613)
Q Consensus       405 T~l~~aL~~A~~~l~~-----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~----~~~L~  475 (613)
                      |++..||+.+.+.+..     +++..+.+|++|||..++.....          ...++.+|++|+|...+    ...|+
T Consensus        79 t~~~~AL~~~~~~~f~~~~g~R~~~~kvvvllTDG~s~d~~~~~----------~~~~i~~~~igvg~~~~~~~~~~~L~  148 (179)
T d1mjna_          79 TNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNID----------AAKDIIRYIIGIGKHFQTKESQETLH  148 (179)
T ss_dssp             CCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSCCG----------GGTTSEEEEEEESGGGCSHHHHHTTG
T ss_pred             chHHHHHHHHHHHHhchhcCCCCCCCeEEEEEECCCCcccchHH----------HHhcCccceEEecccccchhhHHHHH
Confidence            9999999999876521     23446789999999987653211          12348899999997643    34588


Q ss_pred             HHHHhcC-cEEEEcCCCcHHHHHHHHHHHH
Q 007207          476 MLAMISR-GYYGAAYDLDSIEIQMQKLFTR  504 (613)
Q Consensus       476 ~lA~~~g-G~~~~v~~~~~l~~~l~~~~~~  504 (613)
                      .||..+. .+++.+.+.++|...+.++.++
T Consensus       149 ~ias~p~~~~~~~~~~~~~L~~i~~~l~~~  178 (179)
T d1mjna_         149 KFASKPASEFVKILDTFEKLKDLCTELQKK  178 (179)
T ss_dssp             GGSCSCHHHHEEEESSGGGSCCHHHHHHHH
T ss_pred             HHhCCCccceEEEcCCHHHHHHHHHHHHhh
Confidence            8886543 4567788888887777776654

>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku70 subunit N-terminal domain
domain: Ku70 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=131.96  Aligned_cols=172  Identities=10%  Similarity=0.055  Sum_probs=102.3

Q ss_pred             EEEEEeCCCCCC-------CCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee----------eeccccccCHHHH
Q 007207          329 VIFIVDISGSMQ-------GKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL----------FSTSMELATKEAV  388 (613)
Q Consensus       329 vvfviD~SgSM~-------g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~----------~~~~~~~~~~~~~  388 (613)
                      ++||||+||||.       ..++..+++++..++..+   .++|+|+|+.|++....          +.+... .+...+
T Consensus         5 ivf~ID~S~SM~~~d~~~~~s~~~~~~~~~~~~~~~~i~~~~~d~vglv~f~t~~~~~~~~~~~~~~~~~l~~-~~~~~~   83 (220)
T d1jeya2           5 LIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDN-PGAKRI   83 (220)
T ss_dssp             EEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEEC-CCHHHH
T ss_pred             EEEEEECCcccCccccCCCCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEEeccccccCCCcccchhhhhcccC-chHHHH
Confidence            999999999995       346888999998888765   68999999999987642          222211 122222


Q ss_pred             HHHH--------HHHhhcCCCCCCcchHHHHHHHHHHHhcCC--CCccEEEEEecCCcCchh--HHHHHHHHHHHcCCCC
Q 007207          389 ERAH--------QWIGINFIAGGSTNICAPLTKAVEMLTNSR--GSIPIIFLVTDGAVEDER--QICDAMKSRLTNGGSI  456 (613)
Q Consensus       389 ~~a~--------~~i~~~~~~~GgT~l~~aL~~A~~~l~~~~--~~~~~IillTDG~~~~~~--~~~~~~~~~~~~~~~~  456 (613)
                      ....        ..+.......|+|++..||..|.+++....  ...+.|||+|||..+...  .....+..........
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~al~~a~~~~~~~~~~~~~k~IiliTDg~~~~~~~~~~~~~~~~~a~~~~~~  163 (220)
T d1jeya2          84 LELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDT  163 (220)
T ss_dssp             HHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhhhhhhcccCCCCccHHHHHHHHHHHHHhcccccCCcEEEEEecCCCCCCCcchhhHHHHHHHHHHhhh
Confidence            2211        111123456799999999999999997643  235799999999864221  1111111111111123


Q ss_pred             CceEEEEEecCCCCH-------HHHHHHHHhcCcEEEEcCCCcHHHHHHHHHHH
Q 007207          457 CPRIYTFGIGSYCNH-------YFLRMLAMISRGYYGAAYDLDSIEIQMQKLFT  503 (613)
Q Consensus       457 ~~~i~tigiG~~~~~-------~~L~~lA~~~gG~~~~v~~~~~l~~~l~~~~~  503 (613)
                      ++.|++||+|...+.       .++...+....+.|+  .+...+++.+.++..
T Consensus       164 gv~i~~i~ig~~~~~d~~~f~~~~l~~~~~~~~~~~~--~~~~~l~~l~~~i~~  215 (220)
T d1jeya2         164 GIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHF--EESSKLEDLLRKVRA  215 (220)
T ss_dssp             TEEEEEEEBCCTTCCCTTTTGGGTCC--------CCC--CCBCSHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCcchhhhHHHHHhhcccccCcccc--CchhhHHHHHHHHHH
Confidence            589999999864321       233333444444443  455567766665543

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.36  E-value=7e-13  Score=122.43  Aligned_cols=133  Identities=20%  Similarity=0.211  Sum_probs=91.2

Q ss_pred             CCCceEEEEEeCCCCCC----CCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccccccCHHHHHHHHHHHhhcC
Q 007207          324 VFKKDVIFIVDISGSMQ----GKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSMELATKEAVERAHQWIGINF  399 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~----g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~  399 (613)
                      +..++++|+||+||||.    +.++..++.++...+..+.++++++|+.|+++...+ +..   ....+.++++.+.  .
T Consensus         3 P~g~~~vl~iD~SGSM~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vv~F~~~~~~~-~~~---~~~~~~~~~~~~~--~   76 (174)
T d1yvra2           3 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC-PIT---VNMLLHEVVEKMS--D   76 (174)
T ss_dssp             CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECC-SCC---TTSCHHHHHHHHT--T
T ss_pred             CCCCeEEEEEECccccCCcccCccHHHHHHHHHHHHHhhccCCcEEEEEecCCcccc-ccC---ccchHHHHHHHhh--c
Confidence            45689999999999996    346667777766666677788999999999987543 222   2345666777765  3


Q ss_pred             CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchh-HHHHHHHHHHHcCCCCCceEEEEEecC
Q 007207          400 IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDER-QICDAMKSRLTNGGSICPRIYTFGIGS  467 (613)
Q Consensus       400 ~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~-~~~~~~~~~~~~~~~~~~~i~tigiG~  467 (613)
                      ..+|||++..+|+.|.+.    ......||++|||+.+... ...+.+.+..++. ...++++.++++.
T Consensus        77 ~~~ggT~i~~al~~a~~~----~~~~~~ivllTDg~~~~g~~~~~~~l~~y~~~~-~~~~~~~~i~l~~  140 (174)
T d1yvra2          77 ITMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVEDVHPATALKQYREKM-GIPAKLIVCAMTS  140 (174)
T ss_dssp             CCCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHH-TCCCEEEEEECSS
T ss_pred             cccccccHHHHHHHHHhh----hccCCEEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCcEEEEEECcC
Confidence            457899999999988764    2345689999999876432 1222222222221 2347899998754

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-12  Score=125.40  Aligned_cols=136  Identities=14%  Similarity=0.108  Sum_probs=93.9

Q ss_pred             ceEEEEEeCCCCCCCC------cHHHHHHHHHHHHHhC---CCCCeEEEEEeCCcceeeeccc-------------cccC
Q 007207          327 KDVIFIVDISGSMQGK------PLEDTKNALAVALSKL---DPGDSFNIVAFNGETYLFSTSM-------------ELAT  384 (613)
Q Consensus       327 ~~vvfviD~SgSM~g~------~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~~~~~~-------------~~~~  384 (613)
                      -.++||||+|+||...      +++.||+++..+++.+   +++|+|+||.|+++.....+..             ....
T Consensus         3 ~aiv~~lD~S~SM~~~~~~~~srl~~ak~~~~~~v~~~~~~~~~d~vglV~f~~~~t~~~~~~~~~~~~i~~~~~~~~~~   82 (236)
T d1jeyb2           3 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD   82 (236)
T ss_dssp             EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred             ceEEEEEECChhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCcccccccccccceEEEEeccccch
Confidence            3589999999999853      7999999999999876   6899999999999764322211             1112


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHhc----CCCCccEEEEEecCCcCchhHHHHHHHHHHHcCCCCCceE
Q 007207          385 KEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTN----SRGSIPIIFLVTDGAVEDERQICDAMKSRLTNGGSICPRI  460 (613)
Q Consensus       385 ~~~~~~a~~~i~~~~~~~GgT~l~~aL~~A~~~l~~----~~~~~~~IillTDG~~~~~~~~~~~~~~~~~~~~~~~~~i  460 (613)
                      .. ....+...  ....++.|++..||..|++.+..    .+...+.|||+|||..+...+....+.+.+++.   +++|
T Consensus        83 ~~-~~~~~~~~--~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~r~IiL~TDG~~~~~~~~~~~~a~~l~~~---~I~i  156 (236)
T d1jeyb2          83 FD-LLEDIESK--IQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKC---DISL  156 (236)
T ss_dssp             HH-HHHHHHTT--CCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHT---TEEE
T ss_pred             hh-HHHHHhhh--ccccccccchhHHHHHHHHHHHHhhhcccccccEEEEEecCCCCcChHHHHHHHHHHHHc---CCEE
Confidence            22 22222222  23456678999999999988754    233467999999998754433344444555443   4899


Q ss_pred             EEEEecCC
Q 007207          461 YTFGIGSY  468 (613)
Q Consensus       461 ~tigiG~~  468 (613)
                      ++||+|..
T Consensus       157 ~~ig~g~~  164 (236)
T d1jeyb2         157 QFFLPFSL  164 (236)
T ss_dssp             EEEESSCC
T ss_pred             EEEecCCc
Confidence            99999865

>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin beta A domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.8e-09  Score=101.67  Aligned_cols=172  Identities=12%  Similarity=0.101  Sum_probs=110.1

Q ss_pred             CCCceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhC---CCCCeEEEEEeCCccee-------------------------
Q 007207          324 VFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKL---DPGDSFNIVAFNGETYL-------------------------  375 (613)
Q Consensus       324 ~~~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L---~~~d~~~Ii~F~~~~~~-------------------------  375 (613)
                      ..|.|++||+|+||||.. .++.+|.++..+++.+   ..+.|++++.|.+....                         
T Consensus         3 ~yPvDl~Fv~D~TgSM~~-~i~~vk~~i~~i~~~l~~~~~~~r~g~~~f~D~~~~p~~~~~~~~~~~~p~~~~~~~~~~~   81 (248)
T d1tyeb2           3 DYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPM   81 (248)
T ss_dssp             CCCEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSGGGGTCGGGGGTSCCCCC
T ss_pred             CCCeeEEEEEECCcCHHH-HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEecccCccccccchhhccCcccccccccccc
Confidence            358999999999999975 6999999999887654   46789999999875311                         


Q ss_pred             -----eeccccccCHHHHHHHHHHHhhcCCCCCCcch----HHHHHHHHH---HHhcCCCCccEEEEEecCCcCchhH--
Q 007207          376 -----FSTSMELATKEAVERAHQWIGINFIAGGSTNI----CAPLTKAVE---MLTNSRGSIPIIFLVTDGAVEDERQ--  441 (613)
Q Consensus       376 -----~~~~~~~~~~~~~~~a~~~i~~~~~~~GgT~l----~~aL~~A~~---~l~~~~~~~~~IillTDG~~~~~~~--  441 (613)
                           ..+++  .+.   .+..++|+ .+.+.||.+.    ..||..|..   .+.-+++..+.|||+||+.+.....  
T Consensus        82 f~~~~~~~~t--~d~---~~f~~~l~-~~~~~GggD~pE~~~~Al~~a~~~~~~i~Wr~~a~r~viliTDA~~H~~~d~~  155 (248)
T d1tyeb2          82 FGYKHVLTLT--DQV---TRFNEEVK-KQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGR  155 (248)
T ss_dssp             CSEEEEEEEE--SCH---HHHHHHHT-TCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCTTSEEEEEEEESSCBCCTTGGG
T ss_pred             ccceecCCCC--CCH---HHHHHHHh-heecccCCCCcchHHHHHHHHHHHhhhCCCCCCccEEEEEECCCCcccccccc
Confidence                 01111  234   44555555 6677777764    566665542   3333455678999999986541000  


Q ss_pred             -----------------------------HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEc--CC
Q 007207          442 -----------------------------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAA--YD  490 (613)
Q Consensus       442 -----------------------------~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v--~~  490 (613)
                                                   .+..+++.+...+   +.++ +.+ ......+.+.|++..+|.+..+  .+
T Consensus       156 l~g~~~~~d~~~~~~~~~~~~~~~~~dyps~~ql~~~l~~~~---i~~i-fav-t~~~~~~Y~~l~~~~~g~~~~~l~~d  230 (248)
T d1tyeb2         156 LAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKN---INLI-FAV-TENVVNLYQNYSELIPGTTVGVLSMD  230 (248)
T ss_dssp             GGTCCSCCCCCCCBCTTSBBGGGGTSCCCCHHHHHHHHHHTT---EEEE-EEE-CGGGHHHHHHHHHTSTTCEEEECSSC
T ss_pred             cccccccCCCccccCCCCcccccccccCCCHHHHHHHHHHhC---cEEE-EEE-CchhhHHHHHHHHhcCCcEEEEeccc
Confidence                                         1233444443322   3222 223 2334678899999999887765  34


Q ss_pred             CcHHHHHHHHHHHHhcc
Q 007207          491 LDSIEIQMQKLFTRGFS  507 (613)
Q Consensus       491 ~~~l~~~l~~~~~~~~~  507 (613)
                      ...+.+.+.+.++++++
T Consensus       231 ssNi~~lI~~~y~~i~~  247 (248)
T d1tyeb2         231 SSNVLQLIVDAYGKIRS  247 (248)
T ss_dssp             CHHHHHHHHHHHHTCCE
T ss_pred             chhHHHHHHHHHHHHhC
Confidence            56677777777777654

>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=4.4e-06  Score=80.49  Aligned_cols=163  Identities=15%  Similarity=0.118  Sum_probs=105.5

Q ss_pred             CCceEEEEEeCC-CCCCCCcHHHHHHHHHHHHHhCC---CCCeEEEEEeCCcceeee-----------------------
Q 007207          325 FKKDVIFIVDIS-GSMQGKPLEDTKNALAVALSKLD---PGDSFNIVAFNGETYLFS-----------------------  377 (613)
Q Consensus       325 ~~~~vvfviD~S-gSM~g~~~~~ak~al~~~l~~L~---~~d~~~Ii~F~~~~~~~~-----------------------  377 (613)
                      .|-.++||||+| .|....-++.+++++...|+.++   ++.+|+||+|++....+.                       
T Consensus         2 ~Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~dl   81 (252)
T d1pd0a3           2 PPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADL   81 (252)
T ss_dssp             CCCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCCT
T ss_pred             CCCEEEEEEECCHHHhhhhHHHHHHHHHHHHHHhCcCCCCCcEEEEEEECCEEEEEEccCCccccccccccccccchhhh
Confidence            456799999998 33433357888888888888876   578999999999765431                       


Q ss_pred             -----cc------ccccCHHHHHHHHHHHhhcC--CCCCCcchHHHHHHHHHHHhcCCCCccEEEEEecCCcCchhH---
Q 007207          378 -----TS------MELATKEAVERAHQWIGINF--IAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDERQ---  441 (613)
Q Consensus       378 -----~~------~~~~~~~~~~~a~~~i~~~~--~~~GgT~l~~aL~~A~~~l~~~~~~~~~IillTDG~~~~~~~---  441 (613)
                           |.      ......+.+.++++.|....  ...+++.++.||..|...+....   ..|+++++|.++-+..   
T Consensus        82 ~~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~g---GkI~~f~sg~pt~GpG~l~  158 (252)
T d1pd0a3          82 EEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG---GKIIVVSGTLPNLGIGKLQ  158 (252)
T ss_dssp             TCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTC---EEEEEEESSCCCSSTTCCC
T ss_pred             hhccCCCCccceeeHHHHHHHHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhcCC---CEEEEEecCCCCCCCcccc
Confidence                 00      00113455666666664222  33467899999999999987543   3688999998752210   


Q ss_pred             -----------------------HHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHhcCcEEEEcCCCc
Q 007207          442 -----------------------ICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       442 -----------------------~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~~L~~lA~~~gG~~~~v~~~~  492 (613)
                                             ..+.+...+.+ ....+.+|+++. +.++-..|..|++.|||..++..+.+
T Consensus       159 ~r~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~-~~isvdlF~~~~-~~~dl~~l~~l~~~TGG~~~~y~~f~  230 (252)
T d1pd0a3         159 RRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSK-VQITVDLFLASE-DYMDVASLSNLSRFTAGQTHFYPGFS  230 (252)
T ss_dssp             C--------------------CCHHHHHHHHHTT-TTEEEEEEEEES-BCCCHHHHHHHHHTTTCCEEEEETCC
T ss_pred             cccccccccCcccchhcccchHHHHHHHHHHHHH-CCEEEEEEeccc-cccCcHHHhhHhhcCCceEEEeCCCC
Confidence                                   11223333322 222344555443 45688899999999999977766653

>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=1.9e-05  Score=76.75  Aligned_cols=163  Identities=13%  Similarity=0.125  Sum_probs=104.8

Q ss_pred             CceEEEEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCeEEEEEeCCcceeeeccc-------------------------
Q 007207          326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAFNGETYLFSTSM-------------------------  380 (613)
Q Consensus       326 ~~~vvfviD~SgSM~g~~~~~ak~al~~~l~~L~~~d~~~Ii~F~~~~~~~~~~~-------------------------  380 (613)
                      |--++||||+|.  ....+..+++++...++.|+++.+|+||+|++....+.-..                         
T Consensus         2 Pp~yvFvIDvs~--~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~   79 (271)
T d2qtva3           2 PPIFFFVVDLTS--ETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLT   79 (271)
T ss_dssp             CCEEEEEEECCS--CHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHH
T ss_pred             CCEEEEEEECCc--cHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhh
Confidence            456899999975  44578899999999999999999999999998765541000                         


Q ss_pred             ------------------------------c--ccCHHHHHHHHHHHhhcC-----CCCCCcchHHHHHHHHHHHhcC-C
Q 007207          381 ------------------------------E--LATKEAVERAHQWIGINF-----IAGGSTNICAPLTKAVEMLTNS-R  422 (613)
Q Consensus       381 ------------------------------~--~~~~~~~~~a~~~i~~~~-----~~~GgT~l~~aL~~A~~~l~~~-~  422 (613)
                                                    .  ....+.+..+++.|....     ....+..++.||..|..++... .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~  159 (271)
T d2qtva3          80 GQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYK  159 (271)
T ss_dssp             CCC-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhcc
Confidence                                          0  012345666666664211     1224567899999999998632 2


Q ss_pred             CCccEEEEEecCCcCch------------------------------hHHHHHHHHHHHcCCCCCceEEEEEecCCCCHH
Q 007207          423 GSIPIIFLVTDGAVEDE------------------------------RQICDAMKSRLTNGGSICPRIYTFGIGSYCNHY  472 (613)
Q Consensus       423 ~~~~~IillTDG~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~i~tigiG~~~~~~  472 (613)
                      +..-.|++++.|.++.+                              ....+.+...+.+. ...+.+|.+.. +.++-.
T Consensus       160 ~~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~-~isvDlF~~s~-~~~dl~  237 (271)
T d2qtva3         160 NIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAAN-GHTVDIFAGCY-DQIGMS  237 (271)
T ss_dssp             TSCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHH-TEEEEEEEECS-SCCSHH
T ss_pred             CCCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHC-CeEEEEEEecC-ccCChH
Confidence            23346888888876311                              00111222222221 22344554432 456888


Q ss_pred             HHHHHHHhcCcEEEEcCCCc
Q 007207          473 FLRMLAMISRGYYGAAYDLD  492 (613)
Q Consensus       473 ~L~~lA~~~gG~~~~v~~~~  492 (613)
                      .|..+++.|||..++..+.+
T Consensus       238 ~l~~l~~~TGG~v~~~~~F~  257 (271)
T d2qtva3         238 EMKQLTDSTGGVLLLTDAFS  257 (271)
T ss_dssp             HHTHHHHTTTCCEEEESCTT
T ss_pred             HHHhHHhhCCceEEEeCCcC
Confidence            99999999999988877764